Citrus Sinensis ID: 002194
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 954 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZF3 | 960 | Probable glutamyl endopep | yes | no | 0.939 | 0.933 | 0.789 | 0.0 | |
| Q10MJ1 | 938 | Probable glutamyl endopep | yes | no | 0.902 | 0.917 | 0.787 | 0.0 | |
| P34422 | 740 | Dipeptidyl peptidase fami | yes | no | 0.214 | 0.277 | 0.257 | 2e-09 | |
| P39839 | 657 | Uncharacterized peptidase | yes | no | 0.133 | 0.193 | 0.287 | 8e-06 | |
| P13676 | 732 | Acylamino-acid-releasing | yes | no | 0.162 | 0.211 | 0.242 | 1e-05 | |
| Q8R146 | 732 | Acylamino-acid-releasing | yes | no | 0.165 | 0.215 | 0.229 | 3e-05 | |
| P19205 | 732 | Acylamino-acid-releasing | yes | no | 0.153 | 0.199 | 0.248 | 0.0001 | |
| P14740 | 767 | Dipeptidyl peptidase 4 OS | no | no | 0.234 | 0.292 | 0.251 | 0.0001 | |
| P28843 | 760 | Dipeptidyl peptidase 4 OS | no | no | 0.234 | 0.294 | 0.255 | 0.0003 | |
| P13798 | 732 | Acylamino-acid-releasing | yes | no | 0.153 | 0.199 | 0.265 | 0.0003 |
| >sp|Q8VZF3|CGEP_ARATH Probable glutamyl endopeptidase, chloroplastic OS=Arabidopsis thaliana GN=GEP PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1472 bits (3811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 718/910 (78%), Positives = 787/910 (86%), Gaps = 14/910 (1%)
Query: 49 TTAM---TASRLHHLVPIHSVSSKNDG--TNGSLSSSNAVATEDEDNLEGRYRLPPPEIR 103
TT M +ASRL L S +++ G +NGSLS+S +DE + YRLPPPEIR
Sbjct: 59 TTVMASRSASRLRSLASACSGGAEDGGGTSNGSLSASATATEDDELAIGTGYRLPPPEIR 118
Query: 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYT 163
+IVDAPP+PALSFSP RDKILFLKRRALPPL +LARPEEKLAG+RIDG CNTRSRMSFYT
Sbjct: 119 DIVDAPPVPALSFSPHRDKILFLKRRALPPLADLARPEEKLAGVRIDGYCNTRSRMSFYT 178
Query: 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223
G+GIHQL PDG L E EI G PDG K+NFVTWS DGKHLAFSIR+D E+ +SSK VWV
Sbjct: 179 GLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVD-ENGNSSKPVVWV 237
Query: 224 ADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQS 283
ADV+TG ARPLF S DI+LNAIF++FVW++NSTLLV TIP RG+PPKKPLVP GPK S
Sbjct: 238 ADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPSGPKTLS 297
Query: 284 NEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDE 343
NE + ++QVRTFQDLLKDEYD DLFDYYA++QLVL SLDGTVKE+G PAVYTSLDPS D
Sbjct: 298 NETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSLDPSTDH 357
Query: 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRS 403
KY+L+SS+HRPYSFIVPCGRFP++V VWTTDG FVR+LCDLPLAEDIPIA NSVRKGMRS
Sbjct: 358 KYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSVRKGMRS 417
Query: 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW 463
INWR+DKPSTL WAETQDGGDAK+EV+PRDI+Y Q AEP+ GE PE+LHKLDLRYGGISW
Sbjct: 418 INWRADKPSTL-WAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLRYGGISW 476
Query: 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523
CDD+LALVYESWYKTRRTRTWVISPGS DV+PRILFDRSSEDVYSDPGS M+RRT GTY
Sbjct: 477 CDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRRTDAGTY 536
Query: 524 VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583
VIAKIKKENDEGTY+LLNG+GATP+GN+PFLDLFDINTG+KERIWESDKEKY+ET VALM
Sbjct: 537 VIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFETVVALM 596
Query: 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIK 643
SDQ EGDL + +LKILTSKESKTENTQY +Q WPD+K QIT+FPHPYPQLASLQKE+I+
Sbjct: 597 SDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASLQKEMIR 656
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703
YQRKDGVQL+ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF IGST
Sbjct: 657 YQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFAGIGST 716
Query: 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAV 763
S LLWLAR FAIL GPT PIIGEGDEEANDR+VEQLVA AEAAVEEVVRRGVA SKIAV
Sbjct: 717 SALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVADRSKIAV 776
Query: 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823
GGHSYGAFMTANLLAHAPHLF CGIARSGAYNRTLTPFGFQNEDRTLWEAT+ YVEMSPF
Sbjct: 777 GGHSYGAFMTANLLAHAPHLFACGIARSGAYNRTLTPFGFQNEDRTLWEATNVYVEMSPF 836
Query: 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883
MSANK+KKPILL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLV+LP ESHGY+ARESI
Sbjct: 837 MSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGYSARESI 896
Query: 884 MHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTEADFEHD 943
MHVLWETDRWLQKYCV NT+D T D+SK +K +GGG E F
Sbjct: 897 MHVLWETDRWLQKYCVPNTSDADT-----SPDQSKEGSDSADKVSTGTGGGNPE--FGEH 949
Query: 944 GCHLAPRSSL 953
H R SL
Sbjct: 950 EVHSKLRRSL 959
|
Serine-type protease active in vitro against the LHCII N-terminal. Cleaves its substrate on the carboxy-side of Glu residues. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|Q10MJ1|CGEP_ORYSJ Probable glutamyl endopeptidase, chloroplastic OS=Oryza sativa subsp. japonica GN=GEP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1449 bits (3751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/874 (78%), Positives = 770/874 (88%), Gaps = 13/874 (1%)
Query: 82 AVATEDEDNLEGR--YRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELAR 139
+A ED+D YRLPP EI++IVDAPPLP LSFSP +DKILFLKRRALPPL +LA+
Sbjct: 76 GLAQEDDDLSSAMMGYRLPPKEIQDIVDAPPLPVLSFSPSKDKILFLKRRALPPLSDLAK 135
Query: 140 PEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQD 199
PEEKLAG+RIDG NTRSRMSFYTGIGIH+L DG LG E + G+P+GA++NFVTWSQD
Sbjct: 136 PEEKLAGVRIDGYSNTRSRMSFYTGIGIHKLMDDGTLGPEKVVHGYPEGARINFVTWSQD 195
Query: 200 GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259
G+HL+FS+R+D ED++S KLR+W+ADV++G+ARPLF+SP+IYLNAIFD+FVWVNNSTLLV
Sbjct: 196 GRHLSFSVRVDEEDNTSGKLRLWIADVESGEARPLFKSPEIYLNAIFDSFVWVNNSTLLV 255
Query: 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319
CTIPL RG PP+KP VP GPK+QSNE +++QVRTFQDLLKDEYD DLFDYYAT+QLVL
Sbjct: 256 CTIPLSRGAPPQKPSVPSGPKIQSNETSNVVQVRTFQDLLKDEYDADLFDYYATSQLVLA 315
Query: 320 SLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR 379
S DGTVK IGPPAVYTS+DPSPD+KY++ISSIHRPYS+IVPCGRFP++V +WT DG F+R
Sbjct: 316 SFDGTVKPIGPPAVYTSIDPSPDDKYLMISSIHRPYSYIVPCGRFPKKVELWTVDGEFIR 375
Query: 380 ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQ 439
ELCDLPLAEDIPIA +SVRKG RSI WR DKP+ LYW ETQDGGDAKVEV+PRDI+Y +
Sbjct: 376 ELCDLPLAEDIPIATSSVRKGKRSIYWRPDKPAMLYWVETQDGGDAKVEVSPRDIVYMEN 435
Query: 440 AEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499
AEP+ GE PEILHKLDLRY G SWCD+SLALVYESWYKTR+TRTWVISP KDV+PRILF
Sbjct: 436 AEPINGEQPEILHKLDLRYAGTSWCDESLALVYESWYKTRKTRTWVISPDKKDVSPRILF 495
Query: 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDI 559
DRSSEDVYSDPGSPM+RRT+ GTYVIAK+KK+ DE TYILLNG GATPEGN+PFLDLFDI
Sbjct: 496 DRSSEDVYSDPGSPMLRRTAMGTYVIAKVKKQ-DENTYILLNGMGATPEGNVPFLDLFDI 554
Query: 560 NTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619
NTGSKERIW+SDKEKYYET VALMSD+T+G+L L +LKILTSKESKTENTQYY+Q WP+K
Sbjct: 555 NTGSKERIWQSDKEKYYETVVALMSDKTDGELPLEKLKILTSKESKTENTQYYLQIWPEK 614
Query: 620 KSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPG 679
K QITDFPHPYPQLASL KE+I+YQRKDGVQL+ATLYLPPGYDPS+DGPLPCL WSYPG
Sbjct: 615 KQVQITDFPHPYPQLASLYKEMIRYQRKDGVQLTATLYLPPGYDPSQDGPLPCLVWSYPG 674
Query: 680 EFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQL 739
EFKSKDAAGQVRGSPNEFP IG+TS LLWLARGFAIL GPT PIIGEGDEEANDR+VEQL
Sbjct: 675 EFKSKDAAGQVRGSPNEFPGIGATSPLLWLARGFAILSGPTIPIIGEGDEEANDRYVEQL 734
Query: 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799
V AEAA EEVVRRGVAHP KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT
Sbjct: 735 VTSAEAAAEEVVRRGVAHPDKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 794
Query: 800 PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859
PFGFQNEDRTLWEAT+TYVEMSPFMSANK+KKPILL+HGE+DNNSGTLTMQSDRFFNALK
Sbjct: 795 PFGFQNEDRTLWEATNTYVEMSPFMSANKIKKPILLIHGEQDNNSGTLTMQSDRFFNALK 854
Query: 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKG 919
GHGAL RLVILPFESHGY+ARESIMHVLWETDRWLQKYC+S ++ +D
Sbjct: 855 GHGALSRLVILPFESHGYSARESIMHVLWETDRWLQKYCLSGSSKTDSD----------S 904
Query: 920 APHLQNKTVAASGGGGTEADFEHDGCHLAPRSSL 953
+NKTV+ASGGG E +G RS L
Sbjct: 905 VADTENKTVSASGGGAPCEGPEAEGFSSMQRSLL 938
|
Serine-type protease active in vitro against the LHCII N-terminal. Cleaves its substrate on the carboxy-side of Glu residues. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P34422|DPF6_CAEEL Dipeptidyl peptidase family member 6 OS=Caenorhabditis elegans GN=dpf-6 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 20/225 (8%)
Query: 690 VRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGD---EEANDRFVEQLVACAEA 745
V G P G + + WL RG+++L G G N + ++
Sbjct: 435 VHGGPKARDHYGFSPMNAWLTNRGYSVLQVNFRGSTGFGKRLTNAGNGEWGRKMHFDILD 494
Query: 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-----RTLTP 800
AVE V +G+A+ S++AV G SYG + T L P F CG+ G N + + P
Sbjct: 495 AVEFAVSKGIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLISLVQAIPP 554
Query: 801 F--GFQNE-------DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS 851
+ GF+ + D + E + SP A+++ KPI+++ G N+ +S
Sbjct: 555 YWLGFRKDLIKMVGADISDEEGRQSLQSRSPLFFADRVTKPIMIIQGA--NDPRVKQAES 612
Query: 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896
D+F AL+ ++ P E HG ++ M + +LQ+
Sbjct: 613 DQFVAALEKKHIPVTYLLYPDEGHGVRKPQNSMEQHGHIETFLQQ 657
|
Removes N-terminal dipeptides sequentially from polypeptides (By similarity). Essential for control of distal tip cell migration. Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
| >sp|P39839|YUXL_BACSU Uncharacterized peptidase YuxL OS=Bacillus subtilis (strain 168) GN=yuxL PE=3 SV=3 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 12/139 (8%)
Query: 746 AVEEVVRRG-VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN----RTLTP 800
AV+E ++R P ++ V G SYG FMT N + + F + + N ++
Sbjct: 496 AVDEAIKRDPHIDPKRLGVTGGSYGGFMT-NWIVGQTNRFKAAVTQRSISNWISFHGVSD 554
Query: 801 FGFQNED----RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856
G+ D ++E T + SP A ++ P+L++HGE D+ Q+++ F
Sbjct: 555 IGYFFTDWQLEHDMFEDTEKLWDRSPLKYAANVETPLLILHGERDDRCP--IEQAEQLFI 612
Query: 857 ALKGHGALCRLVILPFESH 875
ALK G +LV P SH
Sbjct: 613 ALKKMGKETKLVRFPNASH 631
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P13676|ACPH_RAT Acylamino-acid-releasing enzyme OS=Rattus norvegicus GN=Apeh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 22/177 (12%)
Query: 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-- 795
Q V + AVE+V++ ++A+ G S+G F++ +L+ P + IAR+ N
Sbjct: 558 QDVKDVQFAVEQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIA 617
Query: 796 ------------RTLTPFGFQNE---DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEE 840
T F + N D +WE ++ SP ++K P+LL+ G+E
Sbjct: 618 SMMGSTDIPDWCMVETGFPYSNSCLPDLNVWEEM---LDKSPIKYIPQVKTPVLLMLGQE 674
Query: 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
D Q ++ ALK RL++ P +H + E+ WL +
Sbjct: 675 DRR--VPFKQGMEYYRALKARNVPVRLLLYPKSNHALSEVEAESDSFMNAVLWLHTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|Q8R146|APEH_MOUSE Acylamino-acid-releasing enzyme OS=Mus musculus GN=Apeh PE=2 SV=3 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 16/174 (9%)
Query: 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-- 795
Q V + AV++V++ ++A+ G S+G F++ +L+ P + IAR+ N
Sbjct: 558 QDVKDVQFAVQQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIV 617
Query: 796 ------------RTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNN 843
T F + N+ ++ SP ++K P+LL+ G+ED
Sbjct: 618 SMMGTTDIPDWCMVETGFPYSNDYLPDLNVLEEMLDKSPIKYIPQVKTPVLLMLGQEDRR 677
Query: 844 SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
Q +++ALK RL++ P +H + E T WL +
Sbjct: 678 --VPFKQGLEYYHALKARNVPVRLLLYPKSTHALSEVEVESDSFMNTVLWLHTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P19205|ACPH_PIG Acylamino-acid-releasing enzyme OS=Sus scrofa GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 27/173 (15%)
Query: 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797
Q V + AVE+V++ ++A+ G S+G F++ +L+ P + + R+ N
Sbjct: 558 QDVKDVQFAVEQVLQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIA 617
Query: 798 ------------LTPFGFQNE-----DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEE 840
+ GF D ++W A ++ SP A ++K P+LL+ G+E
Sbjct: 618 SMMGSTDIPDWCMVEAGFSYSSDCLPDLSVWAAM---LDKSPIKYAPQVKTPLLLMLGQE 674
Query: 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE----SIMH-VLW 888
D Q ++ LK RL++ P +H + E S M+ VLW
Sbjct: 675 DRR--VPFKQGMEYYRVLKARNVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 725
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P14740|DPP4_RAT Dipeptidyl peptidase 4 OS=Rattus norvegicus GN=Dpp4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 103/258 (39%), Gaps = 34/258 (13%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL---WLARG 712
+ LPP +D SK PL ++ P K+ DAA ++ N + ST ++ + RG
Sbjct: 529 MILPPHFDKSKKYPLLIDVYAGPCSQKA-DAAFRL----NWATYLASTENIIVASFDGRG 583
Query: 713 FAILGGPTTPIIGE--GDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGA 770
G I + G E D+ A + ++ G ++A+ G SYG
Sbjct: 584 SGYQGDKIMHAINKRLGTLEVEDQI---------EAARQFLKMGFVDSKRVAIWGWSYGG 634
Query: 771 FMTANLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGFQNEDRTLWEATSTYVEMSPF 823
++T+ +L +F CGIA R Y+ T G + L Y +
Sbjct: 635 YVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNL----DHYRNSTVM 690
Query: 824 MSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES 882
A K+ LL+HG D+N QS + AL G + + E HG A+ +
Sbjct: 691 SRAENFKQVEYLLIHGTADDN--VHFQQSAQISKALVDAGVDFQAMWYTDEDHGIASSTA 748
Query: 883 IMHVLWETDRWLQKYCVS 900
H+ +LQ+ C S
Sbjct: 749 HQHIYSHMSHFLQQ-CFS 765
|
Cell surface glycoprotein receptor involved in the costimulatory signal essential for T-cell receptor (TCR)-mediated T-cell activation. Acts as a positive regulator of T-cell coactivation, by binding at least ADA, CAV1, IGF2R, and PTPRC. Its binding to CAV1 and CARD11 induces T-cell proliferation and NF-kappa-B activation in a T-cell receptor/CD3-dependent manner. Its interaction with ADA also regulates lymphocyte-epithelial cell adhesion. In association with FAP is involved in the pericellular proteolysis of the extracellular matrix (ECM), the migration and invasion of endothelial cells into the ECM. May be involved in the promotion of lymphatic endothelial cells adhesion, migration and tube formation. When overexpressed, enhanced cell proliferation, a process inhibited by GPC3. Acts also as a serine exopeptidase with a dipeptidyl peptidase activity that regulates various physiological processes by cleaving peptides in the circulation, including many chemokines, mitogenic growth factors, neuropeptides and peptide hormones (By similarity). Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|P28843|DPP4_MOUSE Dipeptidyl peptidase 4 OS=Mus musculus GN=Dpp4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 104/258 (40%), Gaps = 34/258 (13%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
+ LPP +D SK PL ++ P K+ DA+ ++ N + ST ++ A
Sbjct: 522 MILPPHFDKSKKYPLLLDVYAGPCSQKA-DASFRL----NWATYLASTENII-----VAS 571
Query: 716 LGGPTTPIIGEGDEEANDRFVEQL-VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA 774
G + G+ A +R + L V A + V+ G ++A+ G SYG ++T+
Sbjct: 572 FDGRGSGYQGDKIMHAINRRLGTLEVEDQIEAARQFVKMGFVDSKRVAIWGWSYGGYVTS 631
Query: 775 NLLAHAPHLFCCGIA-----RSGAYNRTLT------PFGFQNEDRTLWEATSTYVEMSPF 823
+L +F CGIA R Y+ T P N D Y +
Sbjct: 632 MVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPIPEDNLDH--------YRNSTVM 683
Query: 824 MSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES 882
A K+ LL+HG D+N QS + AL G + + E HG A+ +
Sbjct: 684 SRAEHFKQVEYLLIHGTADDN--VHFQQSAQISKALVDAGVDFQAMWYTDEDHGIASSTA 741
Query: 883 IMHVLWETDRWLQKYCVS 900
H+ +LQ+ C S
Sbjct: 742 HQHIYSHMSHFLQQ-CFS 758
|
Cell surface glycoprotein receptor involved in the costimulatory signal essential for T-cell receptor (TCR)-mediated T-cell activation. Acts as a positive regulator of T-cell coactivation, by binding at least ADA, CAV1, IGF2R, and PTPRC. Its binding to CAV1 and CARD11 induces T-cell proliferation and NF-kappa-B activation in a T-cell receptor/CD3-dependent manner. Its interaction with ADA also regulates lymphocyte-epithelial cell adhesion. In association with FAP is involved in the pericellular proteolysis of the extracellular matrix (ECM), the migration and invasion of endothelial cells into the ECM. May be involved in the promotion of lymphatic endothelial cells adhesion, migration and tube formation. When overexpressed, enhanced cell proliferation, a process inhibited by GPC3. Acts also as a serine exopeptidase with a dipeptidyl peptidase activity that regulates various physiological processes by cleaving peptides in the circulation, including many chemokines, mitogenic growth factors, neuropeptides and peptide hormones. Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|P13798|ACPH_HUMAN Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=1 SV=4 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 27/173 (15%)
Query: 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-- 795
Q V + AVE+V++ S +A+ G S+G F++ +L+ P + +AR+ N
Sbjct: 558 QDVKDVQFAVEQVLQEEHFDASHVALMGGSHGGFISCHLIGQYPETYRACVARNPVINIA 617
Query: 796 ----RTLTP--------FGFQNE---DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEE 840
T P F F ++ D ++W + ++ SP ++K P+LL+ G+E
Sbjct: 618 SMLGSTDIPDWCVVEAGFPFSSDCLPDLSVW---AEMLDKSPIRYIPQVKTPLLLMLGQE 674
Query: 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE----SIMH-VLW 888
D Q ++ ALK RL++ P +H + E S M+ VLW
Sbjct: 675 DRR--VPFKQGMEYYRALKTRNVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 725
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 954 | ||||||
| 359479944 | 961 | PREDICTED: probable glutamyl endopeptida | 0.985 | 0.978 | 0.802 | 0.0 | |
| 297743980 | 913 | unnamed protein product [Vitis vinifera] | 0.941 | 0.983 | 0.827 | 0.0 | |
| 224130988 | 967 | predicted protein [Populus trichocarpa] | 0.960 | 0.947 | 0.815 | 0.0 | |
| 255548453 | 926 | dipeptidyl-peptidase, putative [Ricinus | 0.923 | 0.951 | 0.800 | 0.0 | |
| 224064539 | 905 | predicted protein [Populus trichocarpa] | 0.936 | 0.986 | 0.810 | 0.0 | |
| 357511363 | 962 | Acylamino-acid-releasing enzyme [Medicag | 0.957 | 0.949 | 0.777 | 0.0 | |
| 297828471 | 962 | serine-type peptidase [Arabidopsis lyrat | 0.942 | 0.934 | 0.791 | 0.0 | |
| 30690669 | 961 | prolyl oligopeptidase-like protein [Arab | 0.940 | 0.933 | 0.790 | 0.0 | |
| 332278170 | 960 | RecName: Full=Probable glutamyl endopept | 0.939 | 0.933 | 0.789 | 0.0 | |
| 449436421 | 971 | PREDICTED: probable glutamyl endopeptida | 0.955 | 0.939 | 0.768 | 0.0 |
| >gi|359479944|ref|XP_002270510.2| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1590 bits (4118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 774/965 (80%), Positives = 859/965 (89%), Gaps = 25/965 (2%)
Query: 8 LHKVCHRGVSLLT---PSSLSPPIFLCLKL-----GRVPGHLRT-----HSIKTTTAMTA 54
++K HR +SLL+ P SLSPP FL L L R G LRT T AM++
Sbjct: 3 INKAYHR-LSLLSHHLPFSLSPPHFLSLSLPRFTSTRTRGRLRTLPSCAGGTTTRAAMSS 61
Query: 55 SRLHHLVPIHSVSSKND---GTNGSLSSSNAVATEDEDN--LEGRYRLPPPEIREIVDAP 109
SR HLVPI++ +++ D G+NGS+SS+ EDE+N L YRLPPPEI++IVDAP
Sbjct: 62 SRFLHLVPINAAAAEGDTGVGSNGSVSST----AEDEENSALGSGYRLPPPEIKDIVDAP 117
Query: 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQ 169
PLPALSFSPQRDKILFLKRRALPPLEELA+PEEKLAG+RIDGKCNTRSRMSFYT IGIHQ
Sbjct: 118 PLPALSFSPQRDKILFLKRRALPPLEELAKPEEKLAGIRIDGKCNTRSRMSFYTSIGIHQ 177
Query: 170 LFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG 229
L PDG LG E E+ GFPDGAK+NFV+WS +G+HL+FSIR+D E++SSSKLR+WVADV+TG
Sbjct: 178 LMPDGTLGPEKEVHGFPDGAKINFVSWSLNGQHLSFSIRVD-EENSSSKLRIWVADVETG 236
Query: 230 KARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDI 289
KARPLFQSPDI+LNA+FDNFVWV++STLLVCTIPL RGDPPKKPLVP GPK+QSNE++++
Sbjct: 237 KARPLFQSPDIHLNAVFDNFVWVDDSTLLVCTIPLSRGDPPKKPLVPSGPKVQSNEQKNV 296
Query: 290 IQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILIS 349
+QVRTFQDLLKDEYD DLFDYYATTQLVL SLDGT+KEIGPPAVYTS+DPSPD+KY+LIS
Sbjct: 297 VQVRTFQDLLKDEYDADLFDYYATTQLVLASLDGTMKEIGPPAVYTSMDPSPDQKYLLIS 356
Query: 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409
SIHRPYSFIVPCGRFP++V +WT++G FVRELCDLPLAEDIPIAFNSVRKGMRSINWR+D
Sbjct: 357 SIHRPYSFIVPCGRFPKKVDLWTSEGKFVRELCDLPLAEDIPIAFNSVRKGMRSINWRAD 416
Query: 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469
KPSTLYW ETQD GDAKVEV+PRDI+Y Q AEP+ GE ILHKLDLRYGGISWCDDSLA
Sbjct: 417 KPSTLYWVETQDEGDAKVEVSPRDIVYMQPAEPLDGEQQAILHKLDLRYGGISWCDDSLA 476
Query: 470 LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529
LVYESWYKTRRTRTWVISPGS+DV+PRILFDRSSEDVYSDPGSPM+RRT+ GTYVIAKIK
Sbjct: 477 LVYESWYKTRRTRTWVISPGSEDVSPRILFDRSSEDVYSDPGSPMLRRTTAGTYVIAKIK 536
Query: 530 KENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEG 589
KENDEGTYILLNG+GATPEGNIPFLDLFDINTGSKERIWESDKEKYYET VALMSDQ+EG
Sbjct: 537 KENDEGTYILLNGSGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETVVALMSDQSEG 596
Query: 590 DLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDG 649
DLYLNQLKILTSKESKTENTQY+IQSW DKK+CQIT+FPHPYPQLASLQKE+I+Y+RKDG
Sbjct: 597 DLYLNQLKILTSKESKTENTQYFIQSWLDKKACQITNFPHPYPQLASLQKEMIRYERKDG 656
Query: 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL 709
VQL+ATLYLPPGYDPSKDGPLPCL WSYPGEFKSKDAAGQVRGSPNEF IG TS LLWL
Sbjct: 657 VQLTATLYLPPGYDPSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEFAGIGPTSALLWL 716
Query: 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYG 769
AR FAIL GPT PIIGEG+EEANDR+VEQLVA AEAAVEEV+RRGVAHP+KIAVGGHSYG
Sbjct: 717 ARRFAILSGPTIPIIGEGNEEANDRYVEQLVASAEAAVEEVIRRGVAHPNKIAVGGHSYG 776
Query: 770 AFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL 829
AFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEAT TYVEMSPFMSANK+
Sbjct: 777 AFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATDTYVEMSPFMSANKI 836
Query: 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889
K+P+LL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE
Sbjct: 837 KRPVLLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 896
Query: 890 TDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTE-ADFEHDGCHLA 948
TDRWLQK+CVSNT + + +L D+ + ++KTV ASGGG E A+ EH+G H
Sbjct: 897 TDRWLQKHCVSNTTNVNENLDTCNDEAKEEITDPESKTVPASGGGNPELAESEHEGFHPR 956
Query: 949 PRSSL 953
R+SL
Sbjct: 957 ARASL 961
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743980|emb|CBI36950.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1578 bits (4086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 751/908 (82%), Positives = 832/908 (91%), Gaps = 10/908 (1%)
Query: 52 MTASRLHHLVPIHSVSSKND---GTNGSLSSSNAVATEDEDN--LEGRYRLPPPEIREIV 106
M++SR HLVPI++ +++ D G+NGS+SS+ EDE+N L YRLPPPEI++IV
Sbjct: 1 MSSSRFLHLVPINAAAAEGDTGVGSNGSVSST----AEDEENSALGSGYRLPPPEIKDIV 56
Query: 107 DAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIG 166
DAPPLPALSFSPQRDKILFLKRRALPPLEELA+PEEKLAG+RIDGKCNTRSRMSFYT IG
Sbjct: 57 DAPPLPALSFSPQRDKILFLKRRALPPLEELAKPEEKLAGIRIDGKCNTRSRMSFYTSIG 116
Query: 167 IHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV 226
IHQL PDG LG E E+ GFPDGAK+NFV+WS +G+HL+FSIR+D E++SSSKLR+WVADV
Sbjct: 117 IHQLMPDGTLGPEKEVHGFPDGAKINFVSWSLNGQHLSFSIRVDEEENSSSKLRIWVADV 176
Query: 227 DTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEK 286
+TGKARPLFQSPDI+LNA+FDNFVWV++STLLVCTIPL RGDPPKKPLVP GPK+QSNE+
Sbjct: 177 ETGKARPLFQSPDIHLNAVFDNFVWVDDSTLLVCTIPLSRGDPPKKPLVPSGPKVQSNEQ 236
Query: 287 RDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYI 346
++++QVRTFQDLLKDEYD DLFDYYATTQLVL SLDGT+KEIGPPAVYTS+DPSPD+KY+
Sbjct: 237 KNVVQVRTFQDLLKDEYDADLFDYYATTQLVLASLDGTMKEIGPPAVYTSMDPSPDQKYL 296
Query: 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINW 406
LISSIHRPYSFIVPCGRFP++V +WT++G FVRELCDLPLAEDIPIAFNSVRKGMRSINW
Sbjct: 297 LISSIHRPYSFIVPCGRFPKKVDLWTSEGKFVRELCDLPLAEDIPIAFNSVRKGMRSINW 356
Query: 407 RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466
R+DKPSTLYW ETQD GDAKVEV+PRDI+Y Q AEP+ GE ILHKLDLRYGGISWCDD
Sbjct: 357 RADKPSTLYWVETQDEGDAKVEVSPRDIVYMQPAEPLDGEQQAILHKLDLRYGGISWCDD 416
Query: 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIA 526
SLALVYESWYKTRRTRTWVISPGS+DV+PRILFDRSSEDVYSDPGSPM+RRT+ GTYVIA
Sbjct: 417 SLALVYESWYKTRRTRTWVISPGSEDVSPRILFDRSSEDVYSDPGSPMLRRTTAGTYVIA 476
Query: 527 KIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQ 586
KIKKENDEGTYILLNG+GATPEGNIPFLDLFDINTGSKERIWESDKEKYYET VALMSDQ
Sbjct: 477 KIKKENDEGTYILLNGSGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETVVALMSDQ 536
Query: 587 TEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQR 646
+EGDLYLNQLKILTSKESKTENTQY+IQSW DKK+CQIT+FPHPYPQLASLQKE+I+Y+R
Sbjct: 537 SEGDLYLNQLKILTSKESKTENTQYFIQSWLDKKACQITNFPHPYPQLASLQKEMIRYER 596
Query: 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVL 706
KDGVQL+ATLYLPPGYDPSKDGPLPCL WSYPGEFKSKDAAGQVRGSPNEF IG TS L
Sbjct: 597 KDGVQLTATLYLPPGYDPSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEFAGIGPTSAL 656
Query: 707 LWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGH 766
LWLAR FAIL GPT PIIGEG+EEANDR+VEQLVA AEAAVEEV+RRGVAHP+KIAVGGH
Sbjct: 657 LWLARRFAILSGPTIPIIGEGNEEANDRYVEQLVASAEAAVEEVIRRGVAHPNKIAVGGH 716
Query: 767 SYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSA 826
SYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEAT TYVEMSPFMSA
Sbjct: 717 SYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATDTYVEMSPFMSA 776
Query: 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886
NK+K+P+LL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV
Sbjct: 777 NKIKRPVLLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 836
Query: 887 LWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTE-ADFEHDGC 945
LWETDRWLQK+CVSNT + + +L D+ + ++KTV ASGGG E A+ EH+G
Sbjct: 837 LWETDRWLQKHCVSNTTNVNENLDTCNDEAKEEITDPESKTVPASGGGNPELAESEHEGF 896
Query: 946 HLAPRSSL 953
H R+SL
Sbjct: 897 HPRARASL 904
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130988|ref|XP_002320974.1| predicted protein [Populus trichocarpa] gi|222861747|gb|EEE99289.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1560 bits (4040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 760/932 (81%), Positives = 835/932 (89%), Gaps = 16/932 (1%)
Query: 36 RVPGHLRTHS---IKTTTAMTASRLHHLVPIHSVSSKNDGTNGSLSSSNAVATEDEDNLE 92
R PGHLRTH K+ MT SR +LVP++S++++N G + S S+A +TEDE+ L
Sbjct: 38 RTPGHLRTHHSKRFKSICTMT-SRFPNLVPLNSIAAENVGGRSNDSVSSA-STEDEEALA 95
Query: 93 GRYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGK 152
G+Y+LPPPEI+ IVDAPPLPALSFSPQRDKILFLKRR+LPPL ELARPEEKLAG+RIDGK
Sbjct: 96 GKYQLPPPEIKNIVDAPPLPALSFSPQRDKILFLKRRSLPPLAELARPEEKLAGMRIDGK 155
Query: 153 CNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAE 212
CNTRSRMSFYTGIGIHQL PDG LG E EI G+PDGAK+NFVTWS DG+HLAFSIR D E
Sbjct: 156 CNTRSRMSFYTGIGIHQLMPDGILGPEREIHGYPDGAKINFVTWSLDGRHLAFSIRFDEE 215
Query: 213 DSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272
D+SSSKLRVWVA+V+TG+ARPLFQSP++YLNA+FD FVWV+NSTLLVC IP RGD PKK
Sbjct: 216 DNSSSKLRVWVANVETGQARPLFQSPNVYLNAVFDTFVWVDNSTLLVCAIPSSRGDLPKK 275
Query: 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPA 332
PLVP GPK+QSNE++++IQVRTFQDLLKDEYDEDLFDYYAT+QLVL SLDGT KEIG PA
Sbjct: 276 PLVPSGPKIQSNEQKNVIQVRTFQDLLKDEYDEDLFDYYATSQLVLASLDGTTKEIGNPA 335
Query: 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392
VYTS+DPSPD+KY+L+SSIHRPYSF VPCGRFP++V VWTTDG FVRE+CDLPLAEDIPI
Sbjct: 336 VYTSMDPSPDQKYLLVSSIHRPYSFTVPCGRFPKKVEVWTTDGKFVREVCDLPLAEDIPI 395
Query: 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH 452
A +SVRKGMR+INWR+DKPSTLYWAETQDGGDAKVEV+PRDIIYTQ AEP++GE PEILH
Sbjct: 396 AISSVRKGMRNINWRADKPSTLYWAETQDGGDAKVEVSPRDIIYTQPAEPLEGEQPEILH 455
Query: 453 KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGS 512
KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP SKDV+PRILFDRSSEDVYSDPGS
Sbjct: 456 KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPCSKDVSPRILFDRSSEDVYSDPGS 515
Query: 513 PMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572
PM+RRT GTYVIAKIKKENDEGTYILLNG+GAT EGNIPFLDLFDIN GSKERIWES+K
Sbjct: 516 PMLRRTPAGTYVIAKIKKENDEGTYILLNGSGATSEGNIPFLDLFDINAGSKERIWESEK 575
Query: 573 EKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYP 632
EKYYET V+LMSD EGDL L++LK+LTSKESKTENTQY I+ WP+KK CQIT+FPHPYP
Sbjct: 576 EKYYETVVSLMSDYEEGDLLLDRLKLLTSKESKTENTQYSIKKWPEKKVCQITNFPHPYP 635
Query: 633 QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRG 692
QLASLQKE+IKYQR DGVQL+ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRG
Sbjct: 636 QLASLQKEMIKYQRNDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRG 695
Query: 693 SPNEFPRIGSTSVLLWLARG----------FAILGGPTTPIIGEGDEEANDRFVEQLVAC 742
SPNEF IG TS LLWLAR FAIL GPT PIIGEGD+EANDR+VEQLVA
Sbjct: 696 SPNEFAGIGPTSALLWLARRHEFFPPFLVMFAILSGPTIPIIGEGDKEANDRYVEQLVAS 755
Query: 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 802
AEAAVEEV+RRGVAHP+KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG
Sbjct: 756 AEAAVEEVIRRGVAHPNKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 815
Query: 803 FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
FQNEDRTLWEAT TYVEMSPFMSANK+KKPILL+HGEEDNNSGTLTMQSDRFFNALKGHG
Sbjct: 816 FQNEDRTLWEATGTYVEMSPFMSANKIKKPILLIHGEEDNNSGTLTMQSDRFFNALKGHG 875
Query: 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPH 922
ALCRLVILPFESHGYAARESI+HVLWETDRWLQK+CVSN++D S +L KD+ SKG
Sbjct: 876 ALCRLVILPFESHGYAARESILHVLWETDRWLQKHCVSNSSDASAELDACKDEVSKGVTD 935
Query: 923 LQNKTVAASGGGGTE-ADFEHDGCHLAPRSSL 953
N+ V ASGGGG E ADFEH+G + PRS L
Sbjct: 936 SDNQAVVASGGGGPELADFEHEGFYPLPRSLL 967
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548453|ref|XP_002515283.1| dipeptidyl-peptidase, putative [Ricinus communis] gi|223545763|gb|EEF47267.1| dipeptidyl-peptidase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1526 bits (3951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 740/924 (80%), Positives = 807/924 (87%), Gaps = 43/924 (4%)
Query: 37 VPGHLRTHSIKTTT---AMTA--SRLHHLVPIHSVSSKNDGTNG-SLSSSNAVATEDEDN 90
PGHLRTHS T+ MTA SRL +L+P + + + G S ++S + ED++
Sbjct: 39 TPGHLRTHSRSTSNFKPIMTAATSRLANLLPASAFAGEAADGGGGSNNASTNIVAEDDEA 98
Query: 91 LEGRYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRID 150
L G+Y+LPPPEIR+IVDAPPLPALSFSPQRDKILFLKRRALPPL ELARPEEKLAG+RID
Sbjct: 99 LGGKYQLPPPEIRDIVDAPPLPALSFSPQRDKILFLKRRALPPLAELARPEEKLAGMRID 158
Query: 151 GKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRID 210
GKCNTRSRMSFYTGI IHQL PDG LG E E+ GFPDGAK+NFVTWS DG+HL+FSIR+D
Sbjct: 159 GKCNTRSRMSFYTGINIHQLMPDGTLGPEKEVHGFPDGAKINFVTWSLDGRHLSFSIRVD 218
Query: 211 AEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270
ED+SSSKLRVWVADV+TGKARPLFQS D+YLNA+FDNFVWV+ S+L
Sbjct: 219 EEDNSSSKLRVWVADVETGKARPLFQSSDVYLNAVFDNFVWVDESSL------------- 265
Query: 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP 330
TFQDLLKDEYDEDLFDYYAT+QLVL SLDGT+KEIGP
Sbjct: 266 -----------------------TFQDLLKDEYDEDLFDYYATSQLVLASLDGTLKEIGP 302
Query: 331 PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390
PAVYTS+DPSPD+KYILISSIHRPYSFIVPCGRFP++V +WTTDG FVRELCDLPLAEDI
Sbjct: 303 PAVYTSMDPSPDQKYILISSIHRPYSFIVPCGRFPKKVEIWTTDGKFVRELCDLPLAEDI 362
Query: 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450
PIAFNSVRKGMR+INWRSDKPSTLYWAETQDGGDAKVEV+PRDI+Y Q AEP+ GE PEI
Sbjct: 363 PIAFNSVRKGMRAINWRSDKPSTLYWAETQDGGDAKVEVSPRDIVYAQLAEPLDGEQPEI 422
Query: 451 LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510
L KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG++DV+PRILFDRSSEDVYSDP
Sbjct: 423 LQKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGAEDVSPRILFDRSSEDVYSDP 482
Query: 511 GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570
GSPMMRRT +G YVIAKIKKENDEGTY+LLNG+GATPEG+IPFLDLFDINTGSKERIW+S
Sbjct: 483 GSPMMRRTPSGNYVIAKIKKENDEGTYVLLNGSGATPEGDIPFLDLFDINTGSKERIWQS 542
Query: 571 DKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHP 630
DKEK+YE+ VALMSD EGDLYL+QLK+LTSKESKTENTQYYIQSWPDKK+CQIT+FPHP
Sbjct: 543 DKEKHYESVVALMSDIKEGDLYLDQLKVLTSKESKTENTQYYIQSWPDKKACQITNFPHP 602
Query: 631 YPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQV 690
YPQLASLQKE+I+YQRKDGVQL+ATLYLPPGYDPSKDGPLPCL WSYPGEFKSKDAAGQV
Sbjct: 603 YPQLASLQKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLVWSYPGEFKSKDAAGQV 662
Query: 691 RGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEV 750
RGSPNEF IG TSVLLWLAR FAIL GPT PIIGEGD+EANDR+VEQLVA AEAAVEEV
Sbjct: 663 RGSPNEFAGIGPTSVLLWLARRFAILAGPTIPIIGEGDDEANDRYVEQLVASAEAAVEEV 722
Query: 751 VRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTL 810
+RRGVAHP KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTL
Sbjct: 723 IRRGVAHPGKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTL 782
Query: 811 WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 870
WEAT+TYVEMSPFMSANK+KKPILL+HGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL
Sbjct: 783 WEATTTYVEMSPFMSANKIKKPILLIHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 842
Query: 871 PFESHGYAARESIMHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAA 930
PFESHGYAARESIMHVLWETDRWLQKYCV NT+D + +L KD+ SKG +N VAA
Sbjct: 843 PFESHGYAARESIMHVLWETDRWLQKYCVPNTSDVNAELGARKDEASKGVIDTENNAVAA 902
Query: 931 SGGGGTE-ADFEHDGCHLAPRSSL 953
+GGGG E AD EH+G H PRS L
Sbjct: 903 TGGGGPELADSEHEGFHCIPRSLL 926
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064539|ref|XP_002301512.1| predicted protein [Populus trichocarpa] gi|222843238|gb|EEE80785.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1524 bits (3946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 728/898 (81%), Positives = 812/898 (90%), Gaps = 5/898 (0%)
Query: 56 RLHHLVPIHSVSSKNDGTNGSLSSSNAVATEDEDNLEGRYRLPPPEIREIVDAPPLPALS 115
RL +LVP++S++++N + + S S+ TE+E+ L +Y+LPPPEI++IVDAPPLPALS
Sbjct: 4 RLGNLVPLNSIAAENVVSRSNASVSSTSTTEEEEALACKYQLPPPEIKDIVDAPPLPALS 63
Query: 116 FSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGK 175
SPQ+DKILFLKRR+LPPL ELARPEEKLAGLRIDGKCNT+SRMSFYTGIGIHQL PDG
Sbjct: 64 LSPQKDKILFLKRRSLPPLAELARPEEKLAGLRIDGKCNTKSRMSFYTGIGIHQLMPDGT 123
Query: 176 LGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLF 235
LG E E+ G+PDGAK+NFVTWS DG+HLAFSIR+ ED+SSSKLRVWVA+++TG+ARPLF
Sbjct: 124 LGPEKEVHGYPDGAKINFVTWSLDGRHLAFSIRVFEEDNSSSKLRVWVANMETGQARPLF 183
Query: 236 QSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTF 295
QSPD+YLNA+FDNFVWV+NS+LLVCTIP RGDPPKKP VP GPK+QSNE+++++QVRTF
Sbjct: 184 QSPDVYLNAVFDNFVWVDNSSLLVCTIPSSRGDPPKKPSVPSGPKIQSNEQKNVVQVRTF 243
Query: 296 QDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPY 355
QDLLKDEYDEDLFDYY T+Q+VL SLDGT KE+GPPAVYTS+DPSPD+ Y+LISSIHRPY
Sbjct: 244 QDLLKDEYDEDLFDYYTTSQIVLASLDGTAKEVGPPAVYTSMDPSPDQNYLLISSIHRPY 303
Query: 356 SFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415
SFIVP GRFP++V VWTTDG FVRELCDLPLAEDIPIA +SVRKG R+INWR+DKPSTLY
Sbjct: 304 SFIVPRGRFPKKVEVWTTDGKFVRELCDLPLAEDIPIATSSVRKGKRAINWRADKPSTLY 363
Query: 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475
WAETQDGGDAKVEV+PRDI+YTQ AEP++GE PEILHKLDLRYGGI WCDDSLALVYESW
Sbjct: 364 WAETQDGGDAKVEVSPRDIVYTQPAEPLEGEQPEILHKLDLRYGGIYWCDDSLALVYESW 423
Query: 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEG 535
YKTRRTRTWVISPGSKD +PRILFDRSSEDVYSDPGSPM+RRT GTYVIAKIKKENDEG
Sbjct: 424 YKTRRTRTWVISPGSKDASPRILFDRSSEDVYSDPGSPMLRRTPAGTYVIAKIKKENDEG 483
Query: 536 TYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQ 595
TY+LL G+GATPEGNIPFLDLFDINTGSKERIWESDKE+YYET VALM D EGDL L++
Sbjct: 484 TYVLLKGSGATPEGNIPFLDLFDINTGSKERIWESDKERYYETVVALMLDYEEGDLLLDR 543
Query: 596 LKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSAT 655
L+ILTSKESKTEN QY+IQ WP+KK+CQIT+FPHPYPQLASLQKE+I+YQRKDGVQL+AT
Sbjct: 544 LQILTSKESKTENRQYFIQKWPEKKACQITNFPHPYPQLASLQKEMIRYQRKDGVQLTAT 603
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
LYLPPGYD SKDGPLPCL WSYPGEFKSKDAAGQVRGSPN+F IGSTS LLW FAI
Sbjct: 604 LYLPPGYDSSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNKFAGIGSTSALLW----FAI 659
Query: 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775
L GPT PIIGEGDEEANDR+VEQLVA EAAVEEV++RGVAHP+KIAVGGHSYGAFMTAN
Sbjct: 660 LSGPTIPIIGEGDEEANDRYVEQLVASVEAAVEEVIQRGVAHPNKIAVGGHSYGAFMTAN 719
Query: 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILL 835
LLAHAPHLFCCGIARSGAYNRTLTPFGFQ+EDRTLWEAT+TYVEMSPFMSANK+KKPILL
Sbjct: 720 LLAHAPHLFCCGIARSGAYNRTLTPFGFQHEDRTLWEATTTYVEMSPFMSANKIKKPILL 779
Query: 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895
+HGEEDNNSGTL MQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ
Sbjct: 780 IHGEEDNNSGTLNMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 839
Query: 896 KYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTE-ADFEHDGCHLAPRSS 952
K+CV N D S +L KD+ SKG N+ V ASGGGG E ADFEH+G + PR S
Sbjct: 840 KHCVQNPTDASAELDACKDEVSKGVRDSDNQAVVASGGGGPELADFEHEGFYSLPRFS 897
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511363|ref|XP_003625970.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355500985|gb|AES82188.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1506 bits (3899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 718/923 (77%), Positives = 806/923 (87%), Gaps = 10/923 (1%)
Query: 41 LRTHSIKTTTAMTASRLHHLVPIHSVSSKNDG---TNGSLSSSNAVAT----EDEDNLEG 93
LR + +M+ SR H+VP+ +VS+++ NGS+SSS+ T ED+ L
Sbjct: 40 LRRRTAANFASMSTSRFRHIVPLAAVSTEDGAGGAVNGSVSSSSTADTYYDYEDDLALGV 99
Query: 94 RYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKC 153
Y +PPPEIR+IVDAPP+PALSFSP RDKI+FLKRRALPPL +LARPEEKLAGLRIDG C
Sbjct: 100 GYCVPPPEIRDIVDAPPVPALSFSPFRDKIIFLKRRALPPLTDLARPEEKLAGLRIDGYC 159
Query: 154 NTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAED 213
N+RSRMSFYTG+GIH++ PDG LG E+EI GFP+GAK+NFVTWS D +HL+FSIR++ ED
Sbjct: 160 NSRSRMSFYTGLGIHEILPDGTLGPEVEIHGFPEGAKINFVTWSPDARHLSFSIRVNEED 219
Query: 214 SSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273
S++SKL VWVADV+TGKARPLFQSPD+YLNA+F+N+VWV+NSTLLVCTIP RG PPKKP
Sbjct: 220 SNTSKLSVWVADVETGKARPLFQSPDVYLNAVFENYVWVDNSTLLVCTIPSTRGAPPKKP 279
Query: 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAV 333
LVP GPK+QSNE+++IIQVRTFQDLLKDEYDEDLFDYYAT+QLVL SLDGT K+ GPPA+
Sbjct: 280 LVPGGPKIQSNEQKNIIQVRTFQDLLKDEYDEDLFDYYATSQLVLASLDGTTKDFGPPAI 339
Query: 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIA 393
YTSLDPSPDEKYI+I S+HRPYSFIVPCGRFP++V +W+ DG FVRE+CDLPLAEDIPI
Sbjct: 340 YTSLDPSPDEKYIMIDSMHRPYSFIVPCGRFPKKVELWSADGKFVREICDLPLAEDIPIT 399
Query: 394 FNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK 453
NSVRKGMRSINWR+DKPSTLYW ETQDGGDAKVEV+PRDIIY+Q AE ++GE P ILHK
Sbjct: 400 SNSVRKGMRSINWRADKPSTLYWVETQDGGDAKVEVSPRDIIYSQPAEALEGEQPVILHK 459
Query: 454 LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSP 513
LDLRYGGISWCDDSLA VYESWYKTRR +TWV+SPGS+DV PRILFDRSSEDVYSDPGSP
Sbjct: 460 LDLRYGGISWCDDSLAFVYESWYKTRRIKTWVVSPGSEDVTPRILFDRSSEDVYSDPGSP 519
Query: 514 MMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKE 573
M+RRT GTY+IAKIKK DEG YI+LNG+GATPEGN+PFLDLFDINTGSKERIWESDKE
Sbjct: 520 MLRRTQAGTYIIAKIKKGGDEGRYIILNGSGATPEGNVPFLDLFDINTGSKERIWESDKE 579
Query: 574 KYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQ 633
KY+ET VALMSDQ EGDL L++LKIL SKESKTENTQY SWPDKK Q+T+FPHPYPQ
Sbjct: 580 KYFETVVALMSDQEEGDLQLDRLKILASKESKTENTQYNFISWPDKKIVQVTNFPHPYPQ 639
Query: 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGS 693
LASLQKE+I+Y+RKDGVQL+ATLYLPPGY+PS DGPLPCL WSYPGEFKSKDAA QVRGS
Sbjct: 640 LASLQKEMIRYKRKDGVQLTATLYLPPGYNPSTDGPLPCLVWSYPGEFKSKDAASQVRGS 699
Query: 694 PNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR 753
PNEF IGSTS LLWLA+ FAIL GPT PIIGEG+ EAND +VEQLVA AEAAVEEV+RR
Sbjct: 700 PNEFAGIGSTSALLWLAKRFAILSGPTIPIIGEGEVEANDSYVEQLVASAEAAVEEVIRR 759
Query: 754 GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEA 813
GVAHP KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEA
Sbjct: 760 GVAHPKKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEA 819
Query: 814 TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873
T+TYVEMSPFMSANK+KKPILL+HGEEDNNSGTLTMQSDRFFNALKGHGAL RLVILP+E
Sbjct: 820 TNTYVEMSPFMSANKIKKPILLIHGEEDNNSGTLTMQSDRFFNALKGHGALSRLVILPYE 879
Query: 874 SHGYAARESIMHVLWETDRWLQKYCVSNTADRSTDLKVS--KDDESKGAPHLQNKTVAAS 931
SHGY+ARESIMHVLWET RWL KYCVSNT+D D K++ SKG ++K VAAS
Sbjct: 880 SHGYSARESIMHVLWETGRWLHKYCVSNTSDAGEDHDTGTVKENISKGIADAESKVVAAS 939
Query: 932 GGGGTEA-DFEHDGCHLAPRSSL 953
GGG EA D EH+ H PR L
Sbjct: 940 GGGSKEACDLEHEESHSLPRKFL 962
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828471|ref|XP_002882118.1| serine-type peptidase [Arabidopsis lyrata subsp. lyrata] gi|297327957|gb|EFH58377.1| serine-type peptidase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1488 bits (3851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 721/911 (79%), Positives = 793/911 (87%), Gaps = 12/911 (1%)
Query: 49 TTAMT---ASRLHHLVPIHSVSSKNDG--TNGSLSSSNAVATEDEDNLEGRYRLPPPEIR 103
TT M+ A+RL L + +++ G +NGS+S+S +DE L YRLPPPEIR
Sbjct: 59 TTVMSSRAAARLRCLASVCPGGAEDGGGTSNGSVSASATATEDDELALGTGYRLPPPEIR 118
Query: 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYT 163
+IVDAPP+PALSFSP RDKILFLKRRALPPL +LARPEEKLAG+RIDG CNTRSRMSFYT
Sbjct: 119 DIVDAPPVPALSFSPHRDKILFLKRRALPPLADLARPEEKLAGVRIDGHCNTRSRMSFYT 178
Query: 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223
G+GIHQL PDG L E EI G PDG K+NFVTWS DGKHLAFSIR+D E+ +SSK VWV
Sbjct: 179 GLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVD-ENGNSSKPVVWV 237
Query: 224 ADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQS 283
ADV+TG ARPLF+S DIYLNAIF++FVW++NSTLLV TIP RGDPPKKPLVP GPK S
Sbjct: 238 ADVETGLARPLFKSQDIYLNAIFESFVWIDNSTLLVSTIPSSRGDPPKKPLVPSGPKTLS 297
Query: 284 NEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDE 343
NE + ++QVRTFQDLLKDEYD DLFDYYAT+QLVL SLDGTVKE+G PAVYTSLDPS D
Sbjct: 298 NETKTVVQVRTFQDLLKDEYDADLFDYYATSQLVLASLDGTVKEVGVPAVYTSLDPSTDH 357
Query: 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRS 403
KY+L+SS+HRPYSFIVPCGR P++V VWTTDG FVR+LCDLPLAEDIPIA NSVRKGMRS
Sbjct: 358 KYLLVSSLHRPYSFIVPCGRLPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSVRKGMRS 417
Query: 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW 463
INWR+DKPST+YWAETQDGGDAK+EV+PRDI+Y Q AEP+ GE PE+LHKLDLRYGGISW
Sbjct: 418 INWRADKPSTIYWAETQDGGDAKIEVSPRDIVYMQSAEPLAGEEPEVLHKLDLRYGGISW 477
Query: 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523
CDD+LALVYESWYKTRRTRTWVISPGS DV+PRILFDRSSEDVYSDPGS M+RRT+ GTY
Sbjct: 478 CDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRRTAAGTY 537
Query: 524 VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583
VIAKIKKENDEGTY+LLNG+GATP+GN+PFLDLFDINTG+KERIWESDKEKY+ET VALM
Sbjct: 538 VIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFETVVALM 597
Query: 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIK 643
SDQ EGDL + +LKILTSKESKTENTQY +Q WPD+K QIT+FPHPYPQLASLQKE+I+
Sbjct: 598 SDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASLQKEMIR 657
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703
YQRKDGVQL+ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF IGST
Sbjct: 658 YQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFAGIGST 717
Query: 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAV 763
S LLWLAR FAIL GPT PIIGEGDEEANDR+VEQLVA AEAAVEEVVRRGVAHPSKIAV
Sbjct: 718 SALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVAHPSKIAV 777
Query: 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823
GGHSYGAFMTANLLAHAPHLF CGIARSGAYNRTLTPFGFQNEDRTLWEAT+ YVEMSPF
Sbjct: 778 GGHSYGAFMTANLLAHAPHLFSCGIARSGAYNRTLTPFGFQNEDRTLWEATNVYVEMSPF 837
Query: 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883
MSANK+KKPILL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLV+LP ESHGY+ARESI
Sbjct: 838 MSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGYSARESI 897
Query: 884 MHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTEADFEHD 943
MHVLWETDRWLQKYCV NTAD T+ D+ K +K +GGG E EH+
Sbjct: 898 MHVLWETDRWLQKYCVPNTADADTN-----PDQFKEGSDSSDKVATGTGGGNPEFG-EHE 951
Query: 944 GCHLAPRSSLW 954
RS LW
Sbjct: 952 VHSKLRRSLLW 962
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30690669|ref|NP_850473.1| prolyl oligopeptidase-like protein [Arabidopsis thaliana] gi|330255741|gb|AEC10835.1| prolyl oligopeptidase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1479 bits (3829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/910 (79%), Positives = 788/910 (86%), Gaps = 13/910 (1%)
Query: 49 TTAM---TASRLHHLVPIHSVSSKNDG--TNGSLSSSNAVATEDEDNLEGRYRLPPPEIR 103
TT M +ASRL L S +++ G +NGSLS+S +DE + YRLPPPEIR
Sbjct: 59 TTVMASRSASRLRSLASACSGGAEDGGGTSNGSLSASATATEDDELAIGTGYRLPPPEIR 118
Query: 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYT 163
+IVDAPP+PALSFSP RDKILFLKRRALPPL +LARPEEKLAG+RIDG CNTRSRMSFYT
Sbjct: 119 DIVDAPPVPALSFSPHRDKILFLKRRALPPLADLARPEEKLAGVRIDGYCNTRSRMSFYT 178
Query: 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223
G+GIHQL PDG L E EI G PDG K+NFVTWS DGKHLAFSIR+D E+ +SSK VWV
Sbjct: 179 GLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVD-ENGNSSKPVVWV 237
Query: 224 ADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQS 283
ADV+TG ARPLF S DI+LNAIF++FVW++NSTLLV TIP RG+PPKKPLVP GPK S
Sbjct: 238 ADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPSGPKTLS 297
Query: 284 NEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDE 343
NE + ++QVRTFQDLLKDEYD DLFDYYA++QLVL SLDGTVKE+G PAVYTSLDPS D
Sbjct: 298 NETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSLDPSTDH 357
Query: 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRS 403
KY+L+SS+HRPYSFIVPCGRFP++V VWTTDG FVR+LCDLPLAEDIPIA NSVRKGMRS
Sbjct: 358 KYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSVRKGMRS 417
Query: 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW 463
INWR+DKPSTLYWAETQDGGDAK+EV+PRDI+Y Q AEP+ GE PE+LHKLDLRYGGISW
Sbjct: 418 INWRADKPSTLYWAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLRYGGISW 477
Query: 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523
CDD+LALVYESWYKTRRTRTWVISPGS DV+PRILFDRSSEDVYSDPGS M+RRT GTY
Sbjct: 478 CDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRRTDAGTY 537
Query: 524 VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583
VIAKIKKENDEGTY+LLNG+GATP+GN+PFLDLFDINTG+KERIWESDKEKY+ET VALM
Sbjct: 538 VIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFETVVALM 597
Query: 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIK 643
SDQ EGDL + +LKILTSKESKTENTQY +Q WPD+K QIT+FPHPYPQLASLQKE+I+
Sbjct: 598 SDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASLQKEMIR 657
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703
YQRKDGVQL+ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF IGST
Sbjct: 658 YQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFAGIGST 717
Query: 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAV 763
S LLWLAR FAIL GPT PIIGEGDEEANDR+VEQLVA AEAAVEEVVRRGVA SKIAV
Sbjct: 718 SALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVADRSKIAV 777
Query: 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823
GGHSYGAFMTANLLAHAPHLF CGIARSGAYNRTLTPFGFQNEDRTLWEAT+ YVEMSPF
Sbjct: 778 GGHSYGAFMTANLLAHAPHLFACGIARSGAYNRTLTPFGFQNEDRTLWEATNVYVEMSPF 837
Query: 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883
MSANK+KKPILL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLV+LP ESHGY+ARESI
Sbjct: 838 MSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGYSARESI 897
Query: 884 MHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTEADFEHD 943
MHVLWETDRWLQKYCV NT+D T D+SK +K +GGG E F
Sbjct: 898 MHVLWETDRWLQKYCVPNTSDADT-----SPDQSKEGSDSADKVSTGTGGGNPE--FGEH 950
Query: 944 GCHLAPRSSL 953
H R SL
Sbjct: 951 EVHSKLRRSL 960
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|332278170|sp|Q8VZF3.2|CGEP_ARATH RecName: Full=Probable glutamyl endopeptidase, chloroplastic; Flags: Precursor | Back alignment and taxonomy information |
|---|
Score = 1472 bits (3811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 718/910 (78%), Positives = 787/910 (86%), Gaps = 14/910 (1%)
Query: 49 TTAM---TASRLHHLVPIHSVSSKNDG--TNGSLSSSNAVATEDEDNLEGRYRLPPPEIR 103
TT M +ASRL L S +++ G +NGSLS+S +DE + YRLPPPEIR
Sbjct: 59 TTVMASRSASRLRSLASACSGGAEDGGGTSNGSLSASATATEDDELAIGTGYRLPPPEIR 118
Query: 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYT 163
+IVDAPP+PALSFSP RDKILFLKRRALPPL +LARPEEKLAG+RIDG CNTRSRMSFYT
Sbjct: 119 DIVDAPPVPALSFSPHRDKILFLKRRALPPLADLARPEEKLAGVRIDGYCNTRSRMSFYT 178
Query: 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223
G+GIHQL PDG L E EI G PDG K+NFVTWS DGKHLAFSIR+D E+ +SSK VWV
Sbjct: 179 GLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVD-ENGNSSKPVVWV 237
Query: 224 ADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQS 283
ADV+TG ARPLF S DI+LNAIF++FVW++NSTLLV TIP RG+PPKKPLVP GPK S
Sbjct: 238 ADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPSGPKTLS 297
Query: 284 NEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDE 343
NE + ++QVRTFQDLLKDEYD DLFDYYA++QLVL SLDGTVKE+G PAVYTSLDPS D
Sbjct: 298 NETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSLDPSTDH 357
Query: 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRS 403
KY+L+SS+HRPYSFIVPCGRFP++V VWTTDG FVR+LCDLPLAEDIPIA NSVRKGMRS
Sbjct: 358 KYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSVRKGMRS 417
Query: 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW 463
INWR+DKPSTL WAETQDGGDAK+EV+PRDI+Y Q AEP+ GE PE+LHKLDLRYGGISW
Sbjct: 418 INWRADKPSTL-WAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLRYGGISW 476
Query: 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523
CDD+LALVYESWYKTRRTRTWVISPGS DV+PRILFDRSSEDVYSDPGS M+RRT GTY
Sbjct: 477 CDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRRTDAGTY 536
Query: 524 VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583
VIAKIKKENDEGTY+LLNG+GATP+GN+PFLDLFDINTG+KERIWESDKEKY+ET VALM
Sbjct: 537 VIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFETVVALM 596
Query: 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIK 643
SDQ EGDL + +LKILTSKESKTENTQY +Q WPD+K QIT+FPHPYPQLASLQKE+I+
Sbjct: 597 SDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASLQKEMIR 656
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703
YQRKDGVQL+ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF IGST
Sbjct: 657 YQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFAGIGST 716
Query: 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAV 763
S LLWLAR FAIL GPT PIIGEGDEEANDR+VEQLVA AEAAVEEVVRRGVA SKIAV
Sbjct: 717 SALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVADRSKIAV 776
Query: 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823
GGHSYGAFMTANLLAHAPHLF CGIARSGAYNRTLTPFGFQNEDRTLWEAT+ YVEMSPF
Sbjct: 777 GGHSYGAFMTANLLAHAPHLFACGIARSGAYNRTLTPFGFQNEDRTLWEATNVYVEMSPF 836
Query: 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883
MSANK+KKPILL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLV+LP ESHGY+ARESI
Sbjct: 837 MSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGYSARESI 896
Query: 884 MHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTEADFEHD 943
MHVLWETDRWLQKYCV NT+D T D+SK +K +GGG E F
Sbjct: 897 MHVLWETDRWLQKYCVPNTSDADT-----SPDQSKEGSDSADKVSTGTGGGNPE--FGEH 949
Query: 944 GCHLAPRSSL 953
H R SL
Sbjct: 950 EVHSKLRRSL 959
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436421|ref|XP_004135991.1| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like isoform 1 [Cucumis sativus] gi|449507834|ref|XP_004163142.1| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1468 bits (3800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 714/929 (76%), Positives = 804/929 (86%), Gaps = 17/929 (1%)
Query: 42 RTHS--IKTTTAMTASRLHHLVPIHSVSSKNDGTNGSLSSSNAV---------ATEDEDN 90
R HS + T++ M +SR +LV ++++ S++ G+ G SN +DED+
Sbjct: 44 RFHSPPLSTSSFMASSRFRNLVHLNAIVSEDGGSGGGGGGSNGSVSSSSAVASTVDDEDS 103
Query: 91 LEG-RYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRI 149
+ G YRLPP EIR+IVDAPPLP LSFSP RDKILFLKRR+LPPL ELA+PEEKLAG+RI
Sbjct: 104 VLGVGYRLPPAEIRDIVDAPPLPLLSFSPYRDKILFLKRRSLPPLAELAKPEEKLAGIRI 163
Query: 150 DGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRI 209
DG+CN RSR+SFYTGIGIHQL PD LG E E++G P+GAK+NFVTWS DG+HLAF++R+
Sbjct: 164 DGQCNCRSRISFYTGIGIHQLMPDDSLGPEKEVRGLPNGAKINFVTWSPDGRHLAFTVRV 223
Query: 210 DAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269
D +D SSSKLRVWVADV+TG+ARPLFQ+ DIY+NA+FDNFVWVN+STLLVCTIP RGDP
Sbjct: 224 DEDDGSSSKLRVWVADVETGEARPLFQNTDIYVNAVFDNFVWVNDSTLLVCTIPFSRGDP 283
Query: 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI 328
PKKPLVP GPK+QSNE+++IIQ RT+QDLLKDEYD+DLFDYYAT+QLVL SL DGTVKE
Sbjct: 284 PKKPLVPPGPKVQSNEQKNIIQARTYQDLLKDEYDKDLFDYYATSQLVLGSLEDGTVKEF 343
Query: 329 G--PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL 386
G PPAVYTSLDPSPD KYILIS+IHRPYSFIVPCGRFP +V VWTTDG FVR+LCDLPL
Sbjct: 344 GTSPPAVYTSLDPSPDHKYILISTIHRPYSFIVPCGRFPNRVAVWTTDGKFVRDLCDLPL 403
Query: 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE 446
AEDIPIAFNSVRKG RSINWR+DKPSTLYW ETQDGGDA+VEV+PRDI+YT+ AEP++ E
Sbjct: 404 AEDIPIAFNSVRKGKRSINWRADKPSTLYWVETQDGGDARVEVSPRDIVYTESAEPLESE 463
Query: 447 GPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDV 506
PEILHKLDLRYGGISWCDDSLALVYESWYKTR+ RTWVISPGSK+ R+LFDRSSEDV
Sbjct: 464 QPEILHKLDLRYGGISWCDDSLALVYESWYKTRKIRTWVISPGSKEDNARLLFDRSSEDV 523
Query: 507 YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566
YSDPGSPM+RRT GTYVIAK+KKEN +GTY+LLNG GATPEGNIPF+DLFDINTGSKER
Sbjct: 524 YSDPGSPMVRRTPFGTYVIAKLKKENYDGTYVLLNGRGATPEGNIPFIDLFDINTGSKER 583
Query: 567 IWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITD 626
IW+SD+E YYE+ VALMSDQ EGDL +N+LK LTSKESKTENTQYYI WP K + QIT
Sbjct: 584 IWKSDRETYYESVVALMSDQKEGDLNINELKFLTSKESKTENTQYYILRWPGKTASQITK 643
Query: 627 FPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDA 686
FPHPYPQLASLQKE+I+Y+RKDGVQL+ATLYLPP YDP+KDGPLPCL WSYPGEFKSKDA
Sbjct: 644 FPHPYPQLASLQKEMIRYERKDGVQLTATLYLPPNYDPAKDGPLPCLIWSYPGEFKSKDA 703
Query: 687 AGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAA 746
AGQVRGSPNEF IG TS LLWLAR FAIL GPT PIIGEG+EEANDR+VEQLV AEAA
Sbjct: 704 AGQVRGSPNEFAGIGPTSALLWLARRFAILAGPTIPIIGEGNEEANDRYVEQLVGSAEAA 763
Query: 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE 806
V+EV++RGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE
Sbjct: 764 VQEVIKRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE 823
Query: 807 DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR 866
DRTLWEATSTYVEMSPF+SANK+KKPILL+HGEEDNN GTL MQSDRFFNALKGHGALCR
Sbjct: 824 DRTLWEATSTYVEMSPFISANKIKKPILLIHGEEDNNPGTLPMQSDRFFNALKGHGALCR 883
Query: 867 LVILPFESHGYAARESIMHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNK 926
LV+LPFESHGY++RESIMHVLWETDRWL+KYC SN +D D +K E GA K
Sbjct: 884 LVVLPFESHGYSSRESIMHVLWETDRWLEKYCSSNASDLGQDGDKNK-QEGNGAADSAGK 942
Query: 927 TVAASGGGGTEADF-EHDGCHLAPRSSLW 954
VA SGGG TE+ ++DG + RS LW
Sbjct: 943 VVAGSGGGDTESSSPDNDGFYSIQRSFLW 971
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 954 | ||||||
| UNIPROTKB|Q8EHB8 | 801 | SO_1310 "Serine peptidase S9 f | 0.444 | 0.529 | 0.391 | 1.7e-80 | |
| TIGR_CMR|SO_1310 | 801 | SO_1310 "conserved hypothetica | 0.444 | 0.529 | 0.391 | 1.7e-80 | |
| UNIPROTKB|Q47UC7 | 693 | CPS_4957 "Putative uncharacter | 0.276 | 0.380 | 0.236 | 4.2e-08 | |
| TIGR_CMR|CPS_4957 | 693 | CPS_4957 "conserved hypothetic | 0.276 | 0.380 | 0.236 | 4.2e-08 | |
| TIGR_CMR|SO_4618 | 645 | SO_4618 "prolyl oligopeptidase | 0.423 | 0.626 | 0.217 | 5.1e-08 | |
| WB|WBGene00001059 | 740 | dpf-6 [Caenorhabditis elegans | 0.430 | 0.555 | 0.215 | 5.3e-08 | |
| TIGR_CMR|SO_4252 | 662 | SO_4252 "prolyl oligopeptidase | 0.238 | 0.344 | 0.247 | 0.00023 |
| UNIPROTKB|Q8EHB8 SO_1310 "Serine peptidase S9 family" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 783 (280.7 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
Identities = 172/439 (39%), Positives = 248/439 (56%)
Query: 457 RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMR 516
R I W ++ LAL+ E K ++ R ++ + + L +R+ D Y D G +
Sbjct: 372 RITDIDWAENHLALITERNSKAQQIRLSSLNTRLGESSLHTLNERNLRDKYQDLGL-FAK 430
Query: 517 RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYY 576
G + ++ + + T ++ G GATP+G+ PFL + T +W+S +
Sbjct: 431 HYYPGKGQVVSLQ-QGAKTTGLIHYGQGATPQGDKPFLKRTSLITSESSLLWQSASNRLE 489
Query: 577 ETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLAS 636
L L+ L+++ ++ES TE+ + + K+S + + P
Sbjct: 490 SVRYVLN---------LDPLQLIINRESPTESPSLVLLN-AAKESV-LYEQPDGLSAYLG 538
Query: 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNE 696
+QK+LI ++R DGV LS TLYLP Y + G LP L W+YP EF + AGQ+ S N+
Sbjct: 539 MQKQLITFKRADGVPLSGTLYLPANYT-KEQGTLPVLMWAYPREFNDPEVAGQISFSANQ 597
Query: 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFXXXXXXXXXXXXXXXXRRGVA 756
+P I + +A GFA+ + PII +GD+E+ND F G+A
Sbjct: 598 YPTISPRGPIPLVAEGFAVFDKVSMPIIAQGDKESNDTFREQLTANAQAAIDTLVDLGIA 657
Query: 757 HPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATST 816
+IAVGGHSYGAFM ANLLAH LF GIARSGAYNR+LTPFGFQNE+RT W+A
Sbjct: 658 DRKQIAVGGHSYGAFMVANLLAHTD-LFYAGIARSGAYNRSLTPFGFQNEERTYWQANDI 716
Query: 817 YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876
Y +MSPF A+K+K P+LL+HGE D NSGT +QS+R F+A++G G RLVILPFE H
Sbjct: 717 YQQMSPFNYADKIKSPLLLIHGEMDQNSGTFPLQSERLFDAIQGLGGKARLVILPFEGHS 776
Query: 877 YAARESIMHVLWETDRWLQ 895
Y A+ES+ H+L+E ++L+
Sbjct: 777 YTAKESLEHLLFEQSQFLK 795
|
|
| TIGR_CMR|SO_1310 SO_1310 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 783 (280.7 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
Identities = 172/439 (39%), Positives = 248/439 (56%)
Query: 457 RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMR 516
R I W ++ LAL+ E K ++ R ++ + + L +R+ D Y D G +
Sbjct: 372 RITDIDWAENHLALITERNSKAQQIRLSSLNTRLGESSLHTLNERNLRDKYQDLGL-FAK 430
Query: 517 RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYY 576
G + ++ + + T ++ G GATP+G+ PFL + T +W+S +
Sbjct: 431 HYYPGKGQVVSLQ-QGAKTTGLIHYGQGATPQGDKPFLKRTSLITSESSLLWQSASNRLE 489
Query: 577 ETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLAS 636
L L+ L+++ ++ES TE+ + + K+S + + P
Sbjct: 490 SVRYVLN---------LDPLQLIINRESPTESPSLVLLN-AAKESV-LYEQPDGLSAYLG 538
Query: 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNE 696
+QK+LI ++R DGV LS TLYLP Y + G LP L W+YP EF + AGQ+ S N+
Sbjct: 539 MQKQLITFKRADGVPLSGTLYLPANYT-KEQGTLPVLMWAYPREFNDPEVAGQISFSANQ 597
Query: 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFXXXXXXXXXXXXXXXXRRGVA 756
+P I + +A GFA+ + PII +GD+E+ND F G+A
Sbjct: 598 YPTISPRGPIPLVAEGFAVFDKVSMPIIAQGDKESNDTFREQLTANAQAAIDTLVDLGIA 657
Query: 757 HPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATST 816
+IAVGGHSYGAFM ANLLAH LF GIARSGAYNR+LTPFGFQNE+RT W+A
Sbjct: 658 DRKQIAVGGHSYGAFMVANLLAHTD-LFYAGIARSGAYNRSLTPFGFQNEERTYWQANDI 716
Query: 817 YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876
Y +MSPF A+K+K P+LL+HGE D NSGT +QS+R F+A++G G RLVILPFE H
Sbjct: 717 YQQMSPFNYADKIKSPLLLIHGEMDQNSGTFPLQSERLFDAIQGLGGKARLVILPFEGHS 776
Query: 877 YAARESIMHVLWETDRWLQ 895
Y A+ES+ H+L+E ++L+
Sbjct: 777 YTAKESLEHLLFEQSQFLK 795
|
|
| UNIPROTKB|Q47UC7 CPS_4957 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 155 (59.6 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 69/292 (23%), Positives = 113/292 (38%)
Query: 619 KKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYP 678
KK ++TD +A ++E + + +DGV++ L P Y K+G L S
Sbjct: 389 KKQTRLTDSNVWLNDIALAKQENLTIKARDGVEIGGVLVYPLDY---KNGQRYPLIMSVH 445
Query: 679 GEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA----NDR 734
G +S D G + + R G + A+G+A+ G+G + + ND
Sbjct: 446 GGPESHDKDGWMTA----YSRPGQLAA----AQGYAVFYPNYRGSTGKGVDYSKLGQND- 496
Query: 735 FXXXXXXXXXXXXXXXXRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794
+ G+ + K+ + G SYG + +A F + G
Sbjct: 497 YAGKEFDDLVDLKNHLVNIGLVNEKKVGITGGSYGGYASAWGATKLTKHFAASVMFVGIS 556
Query: 795 NRTLTPFG---FQNEDRTL------WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG 845
N+ L+ FG NE + W+ Y+E SP + + P+L++HG+ D
Sbjct: 557 NQ-LSKFGTTDISNEMHLVHARSYPWDKWQWYLERSPIYWVEQSETPLLIMHGKADPR-- 613
Query: 846 TLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
QS + +K HG RLV P E HG + RW+ Y
Sbjct: 614 VHPAQSMEMYRYMKVHGKTVRLVYYPGEGHGNKRAAAKYDYSLRLMRWMDNY 665
|
|
| TIGR_CMR|CPS_4957 CPS_4957 "conserved hypothetical protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 155 (59.6 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 69/292 (23%), Positives = 113/292 (38%)
Query: 619 KKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYP 678
KK ++TD +A ++E + + +DGV++ L P Y K+G L S
Sbjct: 389 KKQTRLTDSNVWLNDIALAKQENLTIKARDGVEIGGVLVYPLDY---KNGQRYPLIMSVH 445
Query: 679 GEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA----NDR 734
G +S D G + + R G + A+G+A+ G+G + + ND
Sbjct: 446 GGPESHDKDGWMTA----YSRPGQLAA----AQGYAVFYPNYRGSTGKGVDYSKLGQND- 496
Query: 735 FXXXXXXXXXXXXXXXXRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794
+ G+ + K+ + G SYG + +A F + G
Sbjct: 497 YAGKEFDDLVDLKNHLVNIGLVNEKKVGITGGSYGGYASAWGATKLTKHFAASVMFVGIS 556
Query: 795 NRTLTPFG---FQNEDRTL------WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG 845
N+ L+ FG NE + W+ Y+E SP + + P+L++HG+ D
Sbjct: 557 NQ-LSKFGTTDISNEMHLVHARSYPWDKWQWYLERSPIYWVEQSETPLLIMHGKADPR-- 613
Query: 846 TLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
QS + +K HG RLV P E HG + RW+ Y
Sbjct: 614 VHPAQSMEMYRYMKVHGKTVRLVYYPGEGHGNKRAAAKYDYSLRLMRWMDNY 665
|
|
| TIGR_CMR|SO_4618 SO_4618 "prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 100/460 (21%), Positives = 177/460 (38%)
Query: 465 DDSLALVYESWYKTRRTRT-WVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523
DD+ +YE + +R W S+D + FD +DP +R G
Sbjct: 214 DDTEYRIYEQPEQKSESRLLWSFKAFSEDSIWPLGFD-------ADPNILYVRAYHKGYE 266
Query: 524 VIAKIKKENDEGTYILLNGNGATP-EGNIPFLDL----FDINTGSKER--IWESDKEKYY 576
I K+ + + T L+ N T EG++ + L I+ G E W+ +
Sbjct: 267 AIFKVNLTDPKLTKELVYANEDTDVEGDLIYSQLKKKVIGISEGDGEEYTFWDPEYAGLQ 326
Query: 577 ETTVALMSDQTE--GDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQL 634
A++ + N+ + + S T+ YY +K I + Y QL
Sbjct: 327 NGLKAVLPNAHNYITQFSANERRYIVYSTSSTQPGTYYFGDRDEKVLFPIAE---RYSQL 383
Query: 635 ASLQ---KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR 691
++ Q + + Y+ +D +++ A L +P G+ K LP + + + G S D+
Sbjct: 384 STEQLADTQYLSYEARDKLKIDAYLTVPKGF---KAKHLPTIIFPHGGPI-SYDS----- 434
Query: 692 GSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE--EANDR-FXXXXXXXXXXXXX 748
N+F + RG+A+ G G E +A + +
Sbjct: 435 ---NDFDYWAQ----FFANRGYAVFRMNFRGSAGYGYEFMKAGLKSWGLEMQNDVEDGTR 487
Query: 749 XXXRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY---NRTLTPFGFQN 805
+G++ P +I + G SYG + A P L+ C ++ +G N + F N
Sbjct: 488 YLINQGISDPQRICIVGASYGGYAALMGAAMTPDLYRCAVSVAGVTDVANLVRSSRRFTN 547
Query: 806 ED---RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDR-FFNALKGH 861
+ + + + E SP A+K+ P+LL+HG++D + +Q R F+ LK
Sbjct: 548 YEVVKEQIGDDFNVLYERSPISKADKITIPVLLLHGDKDR---VVKVQHSREMFDELKSR 604
Query: 862 GALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSN 901
+ L H Y + H L T + L K+ N
Sbjct: 605 KKNVEYIELENGGH-YLSNND--HRL-TTFKALDKFLADN 640
|
|
| WB|WBGene00001059 dpf-6 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 162 (62.1 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 99/460 (21%), Positives = 177/460 (38%)
Query: 477 KTRRTRTWV----ISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK-E 531
+T TWV I K + I FD+S+ +Y G + G V+ + +
Sbjct: 212 RTTEQNTWVEYLRIQHDDKAITMPITFDKSNNFMYWIMGDG----SDLGNLVVFPFEDPQ 267
Query: 532 NDEGTYILLN---GNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTE 588
E Y GN + L + ++ K ++ ++ E + E L++ +
Sbjct: 268 QKEILYTAQRAQIGNVLIHPTDKTLLAVTEVY--HKPELFVAN-ETFMEDLQYLVNMKPS 324
Query: 589 GDLYLNQLKI-----LTSKESKTENTQYYI-QSWPDKKSCQITDFPHPYPQLASLQKEL- 641
G + + + I L + S E Y+ + W K ++ P + +L K++
Sbjct: 325 GSMNIVSMSIDMSTWLVTYSSSDEPYDIYLYRRW--NKKAELFMSTRPELKKYTLNKQIG 382
Query: 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYP--GEFKS--KDAAGQVRGSPNEF 697
++ +D + + A L LPP K +P Y G + + V G P
Sbjct: 383 FDFRARDEMTIQAYLSLPPQAPLLKSSQVPDGDRPYANLGMIPAVPQKMIVLVHGGPKAR 442
Query: 698 PRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDE---EANDRFXXXXXXXXXXXXXXXXRR 753
G + + WL RG+++L G G N + +
Sbjct: 443 DHYGFSPMNAWLTNRGYSVLQVNFRGSTGFGKRLTNAGNGEWGRKMHFDILDAVEFAVSK 502
Query: 754 GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-----RTLTPF--GFQNE 806
G+A+ S++AV G SYG + T L P F CG+ G N + + P+ GF+ +
Sbjct: 503 GIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLISLVQAIPPYWLGFRKD 562
Query: 807 -------DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859
D + E + SP A+++ KPI+++ G D +SD+F AL+
Sbjct: 563 LIKMVGADISDEEGRQSLQSRSPLFFADRVTKPIMIIQGANDPR--VKQAESDQFVAALE 620
Query: 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899
++ P E HG ++ M + +LQ+ C+
Sbjct: 621 KKHIPVTYLLYPDEGHGVRKPQNSMEQHGHIETFLQQ-CL 659
|
|
| TIGR_CMR|SO_4252 SO_4252 "prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 63/255 (24%), Positives = 102/255 (40%)
Query: 633 QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRG 692
Q+A ++ I + +DG ++ L LP G + +K+ LP + + G +D G
Sbjct: 402 QMAEVKP--ISFTNRDGQKIHGYLTLPYGKE-AKN--LPLVVNPHGGPHGIRDWWGF--D 454
Query: 693 SPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN-DRFXXXXXXXXXXXXXXXX 751
N+ +VL RG GG GE E+A ++
Sbjct: 455 PQNQLLAQNGMAVLQVNFRGS---GG-----YGERFEQAGYQKWGSDIQHDIIDATQYVI 506
Query: 752 RRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL---------TPFG 802
+G +I + G S+G + AP +F C + +G Y+ L T G
Sbjct: 507 GQGFVDKERICIAGGSFGGYSALQSAVLAPDMFKCAVGFAGVYDLELMFDEGDVARTRSG 566
Query: 803 FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
L + +T MSP + KLK +LLVHG ED + ++S ALK H
Sbjct: 567 TSYLKDVLGQDKATLKAMSPSENVAKLKANLLLVHGGEDERAPIEQLES--LEKALKNHN 624
Query: 863 ALCRLVILPFESHGY 877
+ +++ E HG+
Sbjct: 625 YPYQKLVMDNEGHGF 639
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q10MJ1 | CGEP_ORYSJ | 3, ., 4, ., 2, 1, ., - | 0.7871 | 0.9025 | 0.9179 | yes | no |
| Q8VZF3 | CGEP_ARATH | 3, ., 4, ., 2, 1, ., - | 0.7890 | 0.9392 | 0.9333 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| gw1.XIV.2306.1 | hypothetical protein (967 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 954 | |||
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 1e-44 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 3e-21 | |
| pfam12697 | 187 | pfam12697, Abhydrolase_6, Alpha/beta hydrolase fam | 1e-07 | |
| COG0412 | 236 | COG0412, COG0412, Dienelactone hydrolase and relat | 3e-07 | |
| pfam12695 | 145 | pfam12695, Abhydrolase_5, Alpha/beta hydrolase fam | 6e-06 | |
| COG0400 | 207 | COG0400, COG0400, Predicted esterase [General func | 2e-05 | |
| COG4099 | 387 | COG4099, COG4099, Predicted peptidase [General fun | 9e-05 | |
| pfam01738 | 215 | pfam01738, DLH, Dienelactone hydrolase family | 7e-04 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 171 bits (434), Expect = 1e-44
Identities = 130/674 (19%), Positives = 210/674 (31%), Gaps = 115/674 (17%)
Query: 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPA 332
L + S + + T D LK Y + VS TV+ +
Sbjct: 11 ALARVSDPRVSPPGGRLAYILTGLDFLKPLY----------KSSLWVSDGKTVRLLTFGG 60
Query: 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392
+ L SPD + S TDG V +L + + I
Sbjct: 61 GVSELRWSPDGSVLAFVS----------------------TDGGRVAQLYLVDVGGLITK 98
Query: 393 AFNSVRKGMRSINWRSDKPSTLYW-AETQDGGDAKVEVTPRDIIYTQQAEP--------V 443
V W D + AE D + + V
Sbjct: 99 TAFGVSD----ARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVV 154
Query: 444 QGEGPEILHKLD-LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502
E I L L + D + P ++ I +
Sbjct: 155 DIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDD-------ADPWVTNLYVLIEGNGE 207
Query: 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGN--IPFLDLFDIN 560
E + GS IA + E+D G E L D
Sbjct: 208 LESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDT 267
Query: 561 TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQL------------------------ 596
G+ D + G L ++
Sbjct: 268 RGAWAVEGGLDGDGLLFIA-----TDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDVDG 322
Query: 597 -KILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSAT 655
K+ + S TE + Y+ +++ + ++ + E + Y+ DG +
Sbjct: 323 RKLALAYSSPTEPPEIYLYD-RGEEAKLTSSNNSGLKKVKLAEPEPVTYKSNDGETIHGW 381
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
LY PPG+DP K PL + + + G + QV S N + + + G+A+
Sbjct: 382 LYKPPGFDPRKKYPL--IVYIHGGP------SAQVGYSFNPEIQ-------VLASAGYAV 426
Query: 716 LGGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFM 772
L G G E A + + AAV+ +V+ + P +I + G SYG +M
Sbjct: 427 LAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYM 486
Query: 773 TANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEAT--------STYVEMSPFM 824
T P F +A +G + L R E Y + SP
Sbjct: 487 TLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPEDREKYEDRSPIF 545
Query: 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIM 884
A+ +K P+LL+HGEED+ Q+++ +ALK G LV+ P E HG++ E+ +
Sbjct: 546 YADNIKTPLLLIHGEEDDRVP--IEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRV 603
Query: 885 HVLWETDRWLQKYC 898
VL E W +++
Sbjct: 604 KVLKEILDWFKRHL 617
|
Length = 620 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 3e-21
Identities = 49/206 (23%), Positives = 77/206 (37%), Gaps = 21/206 (10%)
Query: 707 LWLARGF--AILGGPTTPIIGEGDEEANDRF-----VEQLVACAEAAVEEVVRRGVAHPS 759
L RG+ A+ G + G +A + +A AE + + G P
Sbjct: 9 LLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQ----GYVDPD 64
Query: 760 KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG-----AYNRTLTPFGFQ-NEDRTLWEA 813
++A+ G SYG ++T L P LF +A Y +PF + E W+
Sbjct: 65 RLAIWGGSYGGYLTGAALNQRPDLFKAAVAVVPVVDWLTYMSDTSPFTERYMEWGNPWDN 124
Query: 814 TSTYVEMSP--FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP 871
Y +SP K P+LL+HG D+ ++ + AL+ G L+I P
Sbjct: 125 EEGYRYLSPYSPYDNVKAYPPLLLIHGLHDDR--VPPAEALKLVAALQAKGKNVLLLIFP 182
Query: 872 FESHGYAARESIMHVLWETDRWLQKY 897
E HG + +L K
Sbjct: 183 DEGHGGGKPRNKREEYARELAFLLKV 208
|
Length = 212 |
| >gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 35/169 (20%), Positives = 56/169 (33%), Gaps = 17/169 (10%)
Query: 709 LARGFAILGGPTTPIIGE-GDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHS 767
LA G+ +L P P G+ +E A A ++ + + + GHS
Sbjct: 21 LAAGYRVLA-PDLPGHGDSDGPPRTPYSLEDDAADLAALLDALGLG------PVVLVGHS 73
Query: 768 YGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSA- 826
G + A P + S + L + + A
Sbjct: 74 LGGAVALAAAARRPERVAGLVLISPPLRD--LEELLAADAAALLALLRAALLDADLREAL 131
Query: 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875
+L P+L++HGE+D + R AL G LV+LP H
Sbjct: 132 ARLTVPVLVIHGEDDPLVPPEAAR--RLAEALPG----AELVVLPGAGH 174
|
This family contains alpha/beta hydrolase enzymes of diverse specificity. Length = 187 |
| >gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 43/190 (22%), Positives = 64/190 (33%), Gaps = 39/190 (20%)
Query: 708 WLA-RGFAIL-------GGPTTPIIGEGDEEANDRF----VEQLVACAEAAVEEVVRRGV 755
LA G+ +L G T I E E +++A +AA++ + R+
Sbjct: 49 RLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQ 108
Query: 756 AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATS 815
P +I V G G + AP + + A+ +G D T
Sbjct: 109 VDPKRIGVVGFCMGGGLALLAATRAP-----EVKAAVAF------YGGLIADDTA----- 152
Query: 816 TYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875
A K+K P+LL ED D AL+ G L I P H
Sbjct: 153 ---------DAPKIKVPVLLHLAGED--PYIPAADVDALAAALEDAGVKVDLEIYPGAGH 201
Query: 876 GYAARESIMH 885
G+A + H
Sbjct: 202 GFANDRADYH 211
|
Length = 236 |
| >gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 6e-06
Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 30/128 (23%)
Query: 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGF 803
E V+ P +I + GHS G + L A
Sbjct: 43 APDAEAVLADAPLDPERIVLVGHSLGGGVALLLAA------------------------- 77
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA 863
++ + KL P+L++HG D +++ AL G
Sbjct: 78 RDPRVKAAVVLAAGDPPDALDDLAKLTVPVLIIHGTRDG--VVPPEEAEALAAALPGP-- 133
Query: 864 LCRLVILP 871
LV++
Sbjct: 134 -AELVVIE 140
|
This family contains a diverse range of alpha/beta hydrolase enzymes. Length = 145 |
| >gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 24/98 (24%), Positives = 32/98 (32%), Gaps = 24/98 (24%)
Query: 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGF 803
+EE+ S+I + G S GA + +L P LF I SG P
Sbjct: 84 AEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGML-----PLEP 138
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEED 841
+ + PILL HG ED
Sbjct: 139 EL-------------------LPDLAGTPILLSHGTED 157
|
Length = 207 |
| >gnl|CDD|226584 COG4099, COG4099, Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 9e-05
Identities = 36/155 (23%), Positives = 54/155 (34%), Gaps = 16/155 (10%)
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703
Y G +L LY P Y P K P + + + AGQ GS N+
Sbjct: 166 YDESTGNELKYRLYTPKDYAPDKKY-YPLVLFLH--------GAGQ-GGSDNDKVLSSGI 215
Query: 704 SVLLWLAR--GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKI 761
+ W +L PI + +E+ L+ + +E + S+I
Sbjct: 216 GAIAWAGPEDQCFVLAPQYNPIFADSEEKTLLY----LIEKIDLILEVLASTYNIDRSRI 271
Query: 762 AVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796
V G S G F T L P F + +G +R
Sbjct: 272 YVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR 306
|
Length = 387 |
| >gnl|CDD|216672 pfam01738, DLH, Dienelactone hydrolase family | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 31/156 (19%), Positives = 49/156 (31%), Gaps = 42/156 (26%)
Query: 735 FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG------I 788
+E +V AA+ + + K+ V G FC G +
Sbjct: 74 RMEAVVDDLLAAINYLRGQPYVDTKKVGVVG------------------FCLGGRLAFLL 115
Query: 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLT 848
A + ++ +G E P A +K PIL GEED +
Sbjct: 116 AARNGVDAAVSFYGTGPE--------------PPLDEAPAIKAPILAHFGEEDP---FVP 158
Query: 849 MQS-DRFFNALKGHGALCRLVILPFESHGYAARESI 883
++ D AL+ L + P H +AA
Sbjct: 159 AEARDLLEEALRAANVDHELHVYPGAGHAFAADGRE 194
|
Length = 215 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 954 | |||
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 100.0 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 99.97 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 99.95 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.91 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 99.91 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.9 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.9 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 99.89 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.88 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.87 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.87 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.87 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.86 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.86 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.86 | |
| PRK10566 | 249 | esterase; Provisional | 99.83 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.83 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.83 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.82 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.82 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.81 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.8 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.8 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.79 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.79 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.79 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.79 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.78 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.78 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.77 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.77 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 99.76 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.76 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.76 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.76 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.75 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.74 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.74 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.72 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.71 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.7 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.7 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.66 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.65 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.65 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.64 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.64 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.63 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.62 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.62 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.61 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.61 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.61 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.59 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.59 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.59 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.57 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.57 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.56 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.55 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.54 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.53 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.53 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.53 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.52 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.51 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.51 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.5 | |
| PLN02511 | 388 | hydrolase | 99.49 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.48 | |
| PLN00021 | 313 | chlorophyllase | 99.47 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.46 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.46 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.45 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.45 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.45 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.45 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.45 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 99.44 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.44 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.44 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.44 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.43 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.43 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.41 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.41 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.41 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.41 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.41 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.41 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.41 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.39 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.39 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.38 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.38 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.38 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.37 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.37 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.36 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.36 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.35 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.35 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.34 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.34 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.33 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 99.33 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.32 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.32 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.31 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.31 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.31 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.3 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.29 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.29 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 99.29 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.29 | |
| PLN02578 | 354 | hydrolase | 99.29 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 99.27 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.27 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.26 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 99.26 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.26 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.25 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.24 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.23 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.23 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.23 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.23 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.21 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.21 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.2 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.2 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.2 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.2 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.2 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.2 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 99.2 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.17 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 99.17 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.17 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 99.15 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 99.15 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.13 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.13 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 99.12 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.12 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.12 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.11 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.1 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.1 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 99.09 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 99.08 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.08 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.06 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 99.06 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.06 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.06 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 99.05 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.05 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.05 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.05 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 99.05 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.04 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 99.04 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.03 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.03 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.02 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.01 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.01 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 99.0 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.99 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.97 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.97 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 98.97 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 98.94 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.94 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 98.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.92 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.9 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 98.89 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.89 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.89 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 98.86 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.86 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 98.85 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 98.84 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.84 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 98.84 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 98.83 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.83 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 98.82 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 98.81 | |
| PTZ00421 | 493 | coronin; Provisional | 98.81 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.81 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 98.8 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.79 | |
| PTZ00421 | 493 | coronin; Provisional | 98.77 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 98.77 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.76 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 98.74 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 98.74 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.74 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.73 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.72 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.71 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.7 | |
| PTZ00420 | 568 | coronin; Provisional | 98.7 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.7 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.69 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.69 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.67 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.66 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.66 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.66 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.65 | |
| PTZ00420 | 568 | coronin; Provisional | 98.63 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 98.63 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 98.63 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 98.62 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.56 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.55 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 98.54 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.53 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 98.53 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 98.52 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.52 | |
| PRK10115 | 686 | protease 2; Provisional | 98.51 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 98.49 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.48 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 98.46 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.46 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.45 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 98.43 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.42 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 98.4 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.39 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.38 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 98.38 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.38 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.35 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 98.34 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 98.32 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.31 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.3 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 98.29 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.28 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 98.28 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.27 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 98.27 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 98.27 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.26 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.25 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 98.24 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 98.23 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.23 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 98.21 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.21 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 98.21 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.2 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.19 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 98.18 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.17 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 98.14 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 98.14 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 98.12 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 98.11 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.11 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 98.1 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 98.1 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.09 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 98.09 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 98.09 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.08 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.08 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 98.08 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 98.08 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 98.08 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 98.07 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 98.03 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.02 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 98.01 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.0 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.0 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.99 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.97 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 97.94 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.92 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.91 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 97.88 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.88 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 97.88 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 97.87 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 97.87 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.86 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.82 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 97.81 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.81 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 97.78 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 97.78 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.77 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 97.77 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 97.77 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.76 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.76 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.75 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 97.75 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 97.74 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 97.73 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 97.73 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.73 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.7 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 97.69 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 97.68 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 97.67 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.64 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 97.64 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.62 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 97.62 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 97.61 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 97.59 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 97.58 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 97.55 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 97.5 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.5 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.48 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 97.45 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 97.45 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 97.44 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 97.43 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 97.42 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 97.41 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 97.41 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.4 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.39 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 97.39 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 97.37 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.36 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 97.35 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.31 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 97.31 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 97.29 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 97.29 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 97.29 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 97.28 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 97.28 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 97.27 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 97.27 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 97.26 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 97.24 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 97.21 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.21 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.19 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 97.16 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 97.15 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 97.13 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 97.11 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 97.08 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.08 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.08 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 97.05 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 97.01 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 97.01 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 96.99 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 96.99 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 96.99 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 96.96 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 96.94 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 96.89 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 96.89 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.88 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 96.86 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 96.85 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 96.85 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 96.83 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 96.82 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 96.82 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 96.8 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 96.78 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 96.76 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 96.74 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 96.69 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 96.63 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 96.61 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 96.6 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.58 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 96.56 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 96.54 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 96.54 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 96.44 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.43 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 96.42 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 96.4 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.39 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 96.32 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.28 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.27 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.24 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 96.2 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 96.12 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 96.08 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.08 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 96.04 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 96.03 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 95.99 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 95.92 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 95.89 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 95.88 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 95.87 | |
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 95.85 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 95.84 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 95.8 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 95.68 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 95.66 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 95.58 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 95.52 | |
| KOG4388 | 880 | consensus Hormone-sensitive lipase HSL [Lipid tran | 95.51 | |
| COG3946 | 456 | VirJ Type IV secretory pathway, VirJ component [In | 95.44 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.37 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 95.36 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 95.3 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 95.28 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 95.27 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 95.18 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.18 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 95.15 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 95.12 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 94.88 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 94.87 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.81 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 94.67 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 94.63 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 94.58 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 94.57 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 94.55 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 94.49 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 94.46 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 94.32 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 94.23 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.22 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 94.19 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 94.14 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 94.12 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 94.07 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.01 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 93.91 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 93.91 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 93.83 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 93.68 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 93.59 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 93.42 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 93.42 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 93.37 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.19 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 93.15 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 92.92 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 92.89 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 92.83 | |
| PLN02209 | 437 | serine carboxypeptidase | 92.69 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 92.63 | |
| PF11288 | 207 | DUF3089: Protein of unknown function (DUF3089); In | 92.56 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 92.51 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 92.49 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 92.44 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 92.42 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 92.41 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 92.29 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 92.16 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.13 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.98 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 91.9 | |
| TIGR03712 | 511 | acc_sec_asp2 accessory Sec system protein Asp2. Th | 91.79 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 91.55 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 91.32 | |
| smart00824 | 212 | PKS_TE Thioesterase. Peptide synthetases are invol | 91.32 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 91.17 | |
| KOG1551 | 371 | consensus Uncharacterized conserved protein [Funct | 91.03 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 91.01 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 90.77 | |
| KOG2521 | 350 | consensus Uncharacterized conserved protein [Funct | 90.57 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 90.38 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 90.38 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 90.33 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 90.19 | |
| KOG3975 | 301 | consensus Uncharacterized conserved protein [Funct | 90.18 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 89.9 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 89.82 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 89.61 |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=426.09 Aligned_cols=599 Identities=19% Similarity=0.258 Sum_probs=389.2
Q ss_pred HHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceee
Q 002194 102 IREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (954)
Q Consensus 102 ~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~ 181 (954)
..+++....+..+.++|+|+.+++.... ++....... +.+|+.+.. ..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------------~~~~~~~~~-----~~~~~~d~~------~~~~ 55 (620)
T COG1506 6 AEDLLALARVSDPRVSPPGGRLAYILTG-------------------LDFLKPLYK-----SSLWVSDGK------TVRL 55 (620)
T ss_pred HHHHHhhhcccCcccCCCCceeEEeecc-------------------ccccccccc-----cceEEEecc------cccc
Confidence 4466677788999999999999999874 233222222 467774431 1111
Q ss_pred eecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 182 lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
.+.+..+..+.|||||+.++|... .+....++|+++.. | .++..... +....|+|+|+.+++.
T Consensus 56 ---~~~~~~~~~~~~spdg~~~~~~~~-----~~~~~~~l~l~~~~-g---~~~~~~~~-----v~~~~~~~~g~~~~~~ 118 (620)
T COG1506 56 ---LTFGGGVSELRWSPDGSVLAFVST-----DGGRVAQLYLVDVG-G---LITKTAFG-----VSDARWSPDGDRIAFL 118 (620)
T ss_pred ---cccCCcccccccCCCCCEEEEEec-----cCCCcceEEEEecC-C---ceeeeecc-----cccceeCCCCCeEEEE
Confidence 234457899999999999999872 13337899999987 4 22222221 5688999999999984
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCcccccccccc--ccceEEEEEeCCceeEcCCC-ccccccc
Q 002194 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYY--ATTQLVLVSLDGTVKEIGPP-AVYTSLD 338 (954)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~--~~~~l~~~~~~G~~~~l~~~-~~~~~~~ 338 (954)
......... +. + .....+ +. .++... ...++|+++..+....+... ..+..+.
T Consensus 119 ~~~~~~~~~-------~~-----~--~~~~~~-----~~-----~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 174 (620)
T COG1506 119 TAEGASKRD-------GG-----D--HLFVDR-----LP-----VWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFA 174 (620)
T ss_pred ecccccccC-------Cc-----e--eeeecc-----cc-----eeecCCCCcccceEEEccCcccccccCCCCceeeee
Confidence 211110000 00 0 000000 00 001100 24568888884344444444 6666777
Q ss_pred cCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002194 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (954)
Q Consensus 339 ~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~ 418 (954)
+.+|++.++........ ........++....+....++..+ .+...+.|.+||+.+++...
T Consensus 175 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~gk~~~~~~~ 235 (620)
T COG1506 175 TDGDGRLVASIRLDDDA------DPWVTNLYVLIEGNGELESLTPGE-------------GSISKLAFDADGKSIALLGT 235 (620)
T ss_pred eCCCCceeEEeeecccc------CCceEeeEEEecCCCceEEEcCCC-------------ceeeeeeeCCCCCeeEEecc
Confidence 77778888777644320 111123334433334444444322 12345778999998777733
Q ss_pred eccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002194 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (954)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 498 (954)
..+.+ . .....+++++. ..++. .. ..+..+ +..+ .. .
T Consensus 236 ~~~~~-~----~~~~~~~~~~~---~~~~~----------d~-~~~~~~-------------------~~~~--~~--~- 272 (620)
T COG1506 236 ESDRG-L----AEGDFILLLDG---ELGEV----------DG-DLSSGD-------------------DTRG--AW--A- 272 (620)
T ss_pred CCccC-c----cccceEEEEec---ccccc----------ce-eeccCC-------------------cccC--cH--H-
Confidence 22210 0 11122222220 00000 00 000000 0000 00 0
Q ss_pred ecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccce
Q 002194 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYET 578 (954)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 578 (954)
+...-++..++|..... . ....++..+...+....+......
T Consensus 273 ----------------~~~~~~~~~~~~~~~~~----------------~-g~~~l~~~~~~~~~~~~~~~~~~~----- 314 (620)
T COG1506 273 ----------------VEGGLDGDGLLFIATDG----------------G-GSSPLFRVDDLGGGVEGLSGDDGG----- 314 (620)
T ss_pred ----------------hccccCCCcEEEEEecC----------------C-CceEEEEEeccCCceeeecCCCce-----
Confidence 00112333344433110 0 011122222222222222222111
Q ss_pred eEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEeecCCC-CCCCcCCCceEEEEEEcCCCeEEEEEEE
Q 002194 579 TVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPH-PYPQLASLQKELIKYQRKDGVQLSATLY 657 (954)
Q Consensus 579 ~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~~-~~~~~~~~~~~~~~~~~~~g~~l~~~l~ 657 (954)
-..|+.+++.+++..+++..|+++|+++. ++..+++..+. .+......++|.+++++.||.+|+++++
T Consensus 315 ---------v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~dG~~i~~~l~ 383 (620)
T COG1506 315 ---------VPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVTYKSNDGETIHGWLY 383 (620)
T ss_pred ---------EEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEEEEcCCCCEEEEEEe
Confidence 13466689999999999999999999986 55556655443 3456777889999999999999999999
Q ss_pred cCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc---hh
Q 002194 658 LPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DR 734 (954)
Q Consensus 658 ~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~ 734 (954)
+|+++++.++ +|+||++||||..... .. .....+.|+++||+|+.++++|+.|||+++.. ..
T Consensus 384 ~P~~~~~~k~--yP~i~~~hGGP~~~~~---------~~----~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~ 448 (620)
T COG1506 384 KPPGFDPRKK--YPLIVYIHGGPSAQVG---------YS----FNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGD 448 (620)
T ss_pred cCCCCCCCCC--CCEEEEeCCCCccccc---------cc----cchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhc
Confidence 9999988775 9999999999843221 11 12467889999999999999999999998765 35
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCcccc-------
Q 002194 735 FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED------- 807 (954)
Q Consensus 735 ~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~------- 807 (954)
++...++|+++++++|.+++.+|++||+|+|+|+||+|+++++++.| +|+|+++..+.+++......+....
T Consensus 449 ~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (620)
T COG1506 449 WGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEEN 527 (620)
T ss_pred cCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHh
Confidence 56678999999999999999999999999999999999999999996 8999999888777544332221111
Q ss_pred -chhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHH
Q 002194 808 -RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886 (954)
Q Consensus 808 -~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~ 886 (954)
...|.+.+.|.+.||+.++.++++|+|||||++|.+|| ++|+.+|+++|+.+|+++++++||+++|++...++....
T Consensus 528 ~~~~~~~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~--~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~ 605 (620)
T COG1506 528 GGGPPEDREKYEDRSPIFYADNIKTPLLLIHGEEDDRVP--IEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKV 605 (620)
T ss_pred CCCcccChHHHHhcChhhhhcccCCCEEEEeecCCccCC--hHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHH
Confidence 11111677899999999999999999999999999999 999999999999999999999999999999988889999
Q ss_pred HHHHHHHHHHhccc
Q 002194 887 LWETDRWLQKYCVS 900 (954)
Q Consensus 887 ~~~i~~fl~~~l~~ 900 (954)
++++++||++|++.
T Consensus 606 ~~~~~~~~~~~~~~ 619 (620)
T COG1506 606 LKEILDWFKRHLKQ 619 (620)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999863
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=392.29 Aligned_cols=322 Identities=18% Similarity=0.131 Sum_probs=243.7
Q ss_pred CCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEeecCCCC
Q 002194 551 IPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHP 630 (954)
Q Consensus 551 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~~~ 630 (954)
...|+++|+++++.+.|.-.... ....++ .+.+++++.+++..+++..|.++|.+++.+++.+.|+..+.+
T Consensus 337 ~~~l~~~~~~~~~~~~l~~~~~~-----~~~~~~----~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~~ 407 (686)
T PRK10115 337 LTSLRQINRKTREVIGIAFDDPA-----YVTWIA----YNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVP 407 (686)
T ss_pred EEEEEEEcCCCCceEEecCCCCc-----eEeeec----ccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecCCC
Confidence 45688899887777766522211 111111 123366788999999999999999999988888888876543
Q ss_pred CCCcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH
Q 002194 631 YPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA 710 (954)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 710 (954)
......+.++.+++++.||.+|+++++.|+.... +++.|+||++|||+.....+ .| ....+.|++
T Consensus 408 ~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~~~--~~~~P~ll~~hGg~~~~~~p---------~f----~~~~~~l~~ 472 (686)
T PRK10115 408 GFDAANYRSEHLWITARDGVEVPVSLVYHRKHFR--KGHNPLLVYGYGSYGASIDA---------DF----SFSRLSLLD 472 (686)
T ss_pred CcCccccEEEEEEEECCCCCEEEEEEEEECCCCC--CCCCCEEEEEECCCCCCCCC---------Cc----cHHHHHHHH
Confidence 2222356899999999999999997666544322 23579999999997543221 12 134568999
Q ss_pred CCcEEEEcCCCCCCCCCCcccchhh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEE
Q 002194 711 RGFAILGGPTTPIIGEGDEEANDRF---VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (954)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~~~~---~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (954)
+||+|+.++.+|+.|+|+.+..... ....++|+++++++|++++++|++|++++|.|+||+|++++++++|++|+|+
T Consensus 473 rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~ 552 (686)
T PRK10115 473 RGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGV 552 (686)
T ss_pred CCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEE
Confidence 9999999999999999998765322 2256999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCC------CCC--Cccccchhhhc--HHHHHhcCcccccCCCCCC-EEEEEeCCCCCCCCchHHHHHHHH
Q 002194 788 IARSGAYNRTLT------PFG--FQNEDRTLWEA--TSTYVEMSPFMSANKLKKP-ILLVHGEEDNNSGTLTMQSDRFFN 856 (954)
Q Consensus 788 v~~~~~~~~~~~------~~~--~~~~~~~~~~~--~~~~~~~sp~~~~~~~~~P-~Lii~G~~D~~v~~~~~~~~~~~~ 856 (954)
|+.+|++|+... +.. ...+.+.+++. .+.+.++||+.++++++.| +||+||.+|.+|| +.++.++++
T Consensus 553 v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~--~~~~~k~~a 630 (686)
T PRK10115 553 IAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQ--YWEPAKWVA 630 (686)
T ss_pred EecCCchhHhhhcccCCCCCChhHHHHhCCCCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcC--chHHHHHHH
Confidence 999999986532 111 11223444422 3345679999999999999 6788999999999 999999999
Q ss_pred HHHhCCCcEEEEEe---CCCCCcCCCcccHHHH---HHHHHHHHHHhccc
Q 002194 857 ALKGHGALCRLVIL---PFESHGYAARESIMHV---LWETDRWLQKYCVS 900 (954)
Q Consensus 857 ~l~~~g~~~~~~~~---~~~~H~~~~~~~~~~~---~~~i~~fl~~~l~~ 900 (954)
+|+..+++++++++ +++||+. ..+.... ....+.|+-..+..
T Consensus 631 ~Lr~~~~~~~~vl~~~~~~~GHg~--~~~r~~~~~~~A~~~aFl~~~~~~ 678 (686)
T PRK10115 631 KLRELKTDDHLLLLCTDMDSGHGG--KSGRFKSYEGVAMEYAFLIALAQG 678 (686)
T ss_pred HHHhcCCCCceEEEEecCCCCCCC--CcCHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999888888 9999984 3333333 33457888877643
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=288.73 Aligned_cols=350 Identities=20% Similarity=0.226 Sum_probs=272.6
Q ss_pred CCcEEEEEEee--ccCCCcEEEEecCCCCCCCCCCeEEEEECC-CCCeEEEeccCcccccceeEEeccCCccccccccCC
Q 002194 520 TGTYVIAKIKK--ENDEGTYILLNGNGATPEGNIPFLDLFDIN-TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQL 596 (954)
Q Consensus 520 dG~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 596 (954)
.|.|-+-...+ .|+...-+||.+..++|-. .+||+.... .|+..++|...-. .. ..++.+=+
T Consensus 498 SgeweVl~r~Gi~VdE~~~LVYf~gt~d~PlE--~hLyvvsye~~g~~~rlt~~g~s---h~----------~~l~~~~d 562 (867)
T KOG2281|consen 498 SGEWEVLARHGIWVDEVRKLVYFVGTKDTPLE--HHLYVVSYENPGEIARLTEPGYS---HS----------CELDQQCD 562 (867)
T ss_pred ccceeehhhcCeeecccceEEEEEccCCCCce--eeEEEEEEecCCceeeccCCCcc---cc----------hhhhhhhh
Confidence 45665555554 5667778899998887744 379999988 9999999987621 11 12444445
Q ss_pred EEEEEEecCCCCceEEEEECCCCceeEeecCC--------CCCCCcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCC
Q 002194 597 KILTSKESKTENTQYYIQSWPDKKSCQITDFP--------HPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDG 668 (954)
Q Consensus 597 ~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~--------~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~ 668 (954)
.++...++...|+.+.++.+.+++...+-... ...++-+..++|.|.|.+..|..+.|.+|+|.++++++|
T Consensus 563 ~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgkk- 641 (867)
T KOG2281|consen 563 HFVSYYSSVGSPPCVSLYSLSWPENDPLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKK- 641 (867)
T ss_pred hHhhhhhcCCCCceEEEEeccCCccCcccchhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCCCC-
Confidence 57777788888888777776554432221100 111222233458888999889999999999999999986
Q ss_pred CccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCccc---chhhHHHHHHHHHH
Q 002194 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA---NDRFVEQLVACAEA 745 (954)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~ 745 (954)
+|+|+++||||.. |+.. |.|.+........||++||.|+..+.+|+.-+|.++- ....+.-+++|..+
T Consensus 642 -Yptvl~VYGGP~V------QlVn--nsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVe 712 (867)
T KOG2281|consen 642 -YPTVLNVYGGPGV------QLVN--NSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVE 712 (867)
T ss_pred -CceEEEEcCCCce------EEee--ccccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHH
Confidence 9999999999854 4433 5676666666778999999999988888877777643 24455667999999
Q ss_pred HHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCcccc-chhhhcHHHHHhcCcc
Q 002194 746 AVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED-RTLWEATSTYVEMSPF 823 (954)
Q Consensus 746 av~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~ 823 (954)
++++|.++ +++|.+||+|.|+||||+|++++++++|+.|+++|+.+|+.+|..++-+++... +.+-.+...|..-|..
T Consensus 713 glq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT~W~~YDTgYTERYMg~P~~nE~gY~agSV~ 792 (867)
T KOG2281|consen 713 GLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVTDWRLYDTGYTERYMGYPDNNEHGYGAGSVA 792 (867)
T ss_pred HHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceeeEEeccCcceeeeeecccchhhhcCCCccchhcccchhHH
Confidence 99999998 599999999999999999999999999999999999999999888776665442 3333455667777777
Q ss_pred cccCCCC---CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 824 MSANKLK---KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 824 ~~~~~~~---~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.++.++. ..+|++||-.|++|+ +.+...+..+|.++|++.++++||++-|.+...++....-.+++.|+++
T Consensus 793 ~~VeklpdepnRLlLvHGliDENVH--F~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 793 GHVEKLPDEPNRLLLVHGLIDENVH--FAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred HHHhhCCCCCceEEEEecccccchh--hhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 7787774 459999999999999 9999999999999999999999999999998888888887889999876
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-30 Score=303.74 Aligned_cols=352 Identities=25% Similarity=0.295 Sum_probs=256.3
Q ss_pred CCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEE
Q 002194 520 TGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKIL 599 (954)
Q Consensus 520 dG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 599 (954)
-|+|-+......+.....+||..... .....+||.+++.+.....++..... ..... ...+++...+.++
T Consensus 384 ~g~w~v~~i~~~~~~~~~i~f~~~~~--~~~~~~ly~i~~~~~~~~~lt~~~~~---~~~~~-----~~~~~~~~~~~~v 453 (755)
T KOG2100|consen 384 SGNWEVTSILGYDKDSNRIYFDAYEE--DPSERHLYSISLGSGTVESLTCSLIT---GPCTY-----LSVSFSKSAKYYV 453 (755)
T ss_pred ccceEEEEeccccCCCceEEEEecCC--CCCceEEEEEEccccccccccccCCC---CcceE-----EEEecCCcccEEE
Confidence 34444443333333344444444332 12356799999998887777665532 00111 1245677778888
Q ss_pred EEEecCCCCce-EEEEECCCCc-eeEeecCCCCCC----CcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEE
Q 002194 600 TSKESKTENTQ-YYIQSWPDKK-SCQITDFPHPYP----QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCL 673 (954)
Q Consensus 600 ~~~~s~~~p~~-l~~~~~~~g~-~~~Lt~~~~~~~----~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~v 673 (954)
..+.++..|.. +-..+....+ ...|. .+..+. .......+..+++. +|....+.+.+|+++++.++ +|+|
T Consensus 454 ~~~~gP~~p~~~~~~~~~~~~~~~~~Le-~n~~~~~~~~~~~~p~~~~~~i~~-~~~~~~~~~~lP~~~~~~~k--yPll 529 (755)
T KOG2100|consen 454 LSCSGPKVPDGQLTRHSSKNSKTIVVLE-TNEELKKTIENVALPIVEFGKIEI-DGITANAILILPPNFDPSKK--YPLL 529 (755)
T ss_pred EEccCCCCCcceeeccccccceEEEEec-cChhhHHHhhcccCCcceeEEEEe-ccEEEEEEEecCCCCCCCCC--CCEE
Confidence 88888888754 2222212222 22222 222221 12222233333333 89999999999999988774 9999
Q ss_pred EEECCCCCcCcccCccccCCCCCCCCcccHHHH-HHHHCCcEEEEcCCCCCCCCCCccc---chhhHHHHHHHHHHHHHH
Q 002194 674 FWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVL-LWLARGFAILGGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEE 749 (954)
Q Consensus 674 v~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~la~~G~~V~~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~av~~ 749 (954)
|.+||||... ++.. .| ...+.. .+...|++|+..+++|+.|+|..+. ...++...++|.+.++++
T Consensus 530 v~~yGGP~sq-----~v~~---~~---~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~ 598 (755)
T KOG2100|consen 530 VVVYGGPGSQ-----SVTS---KF---SVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKK 598 (755)
T ss_pred EEecCCCCcc-----eeee---eE---EecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHH
Confidence 9999998521 1111 11 111222 4556999999999999999999854 456677889999999999
Q ss_pred HHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC-CcccEEEEeccCCCCCCCCCCCcccc-chhhhcHHHHHhcCcccccC
Q 002194 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP-HLFCCGIARSGAYNRTLTPFGFQNED-RTLWEATSTYVEMSPFMSAN 827 (954)
Q Consensus 750 l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p-~~~~a~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~~~~~ 827 (954)
+.+++++|++||+|+|+|+||+|+++++.++| +.|+|+|+++|++|+.+..-.+..+. +.++++...|.+.++...++
T Consensus 599 ~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~~yds~~terymg~p~~~~~~y~e~~~~~~~~ 678 (755)
T KOG2100|consen 599 VLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWLYYDSTYTERYMGLPSENDKGYEESSVSSPAN 678 (755)
T ss_pred HHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeeeeecccccHhhcCCCccccchhhhccccchhh
Confidence 99999999999999999999999999999998 78999999999999885544443333 45566666699999999999
Q ss_pred CCCCCE-EEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 828 KLKKPI-LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 828 ~~~~P~-Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
.++.|. |++||+.|.+|+ ++++.+++++|+.+|+++++++||+++|++.......+++..+..||..++
T Consensus 679 ~~~~~~~LliHGt~DdnVh--~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~ 748 (755)
T KOG2100|consen 679 NIKTPKLLLIHGTEDDNVH--FQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCF 748 (755)
T ss_pred hhccCCEEEEEcCCcCCcC--HHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHc
Confidence 999887 999999999999 999999999999999999999999999999888888999999999999554
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-26 Score=248.45 Aligned_cols=302 Identities=20% Similarity=0.210 Sum_probs=219.3
Q ss_pred CCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEeecCCC
Q 002194 550 NIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPH 629 (954)
Q Consensus 550 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~~ 629 (954)
..+.|++++.++++.+-|.-.+.. |. .. ++ .+-.++...+.+..+|.++|.+++.+|+.+++.+.|.+..-
T Consensus 338 glp~v~v~~~~~~~~~~i~f~~~a-y~---~~-l~----~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV 408 (682)
T COG1770 338 GLPRVVVRDRKTGEERGIAFDDEA-YS---AG-LS----GNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEV 408 (682)
T ss_pred CCceEEEEecCCCceeeEEecchh-hh---cc-cc----CCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccC
Confidence 367899999988887776544422 11 00 01 22345678999999999999999999999999888876543
Q ss_pred CC-CCcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHH
Q 002194 630 PY-PQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW 708 (954)
Q Consensus 630 ~~-~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 708 (954)
+- .+-..+..++++.+..||++|+..|+.-+++ ..+++.|++++.||.+..+.++ .|+ .....|
T Consensus 409 ~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~--~~~g~~p~lLygYGaYG~s~~p---------~Fs----~~~lSL 473 (682)
T COG1770 409 PGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDT--KLDGSAPLLLYGYGAYGISMDP---------SFS----IARLSL 473 (682)
T ss_pred CCCCChhHeEEEEEEEEcCCCcEeeEEEEEeccc--CCCCCCcEEEEEeccccccCCc---------Ccc----cceeee
Confidence 32 2334577899999999999999999987663 3456799999999976544332 232 234468
Q ss_pred HHCCcEEEEcCCCCCCCCCCcccc-hhhH--HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCccc
Q 002194 709 LARGFAILGGPTTPIIGEGDEEAN-DRFV--EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC 785 (954)
Q Consensus 709 a~~G~~V~~~~~~~~~G~G~~~~~-~~~~--~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~ 785 (954)
+++||+.....-+|..-.|+.+.. .... ..-+.|+++|+++|.++++.++++|+++|.|+||.++..++.+.|++|+
T Consensus 474 lDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~ 553 (682)
T COG1770 474 LDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFA 553 (682)
T ss_pred ecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhh
Confidence 899976665444444334444322 1111 1348999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCCCCCC----CccccchhhhcH------HHHHhcCcccccCCCC-CCEEEEEeCCCCCCCCchHHHHHH
Q 002194 786 CGIARSGAYNRTLTPFG----FQNEDRTLWEAT------STYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRF 854 (954)
Q Consensus 786 a~v~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~ 854 (954)
++|+..|+.|...+... +.......|.++ +....+||+.++..-. .|+|++.|.+|++|. +++..++
T Consensus 554 ~iiA~VPFVDvltTMlD~slPLT~~E~~EWGNP~d~e~y~yikSYSPYdNV~a~~YP~ilv~~Gl~D~rV~--YwEpAKW 631 (682)
T COG1770 554 GIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGNPLDPEYYDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQ--YWEPAKW 631 (682)
T ss_pred heeecCCccchhhhhcCCCCCCCccchhhhCCcCCHHHHHHHhhcCchhccccCCCCceEEEccccCCccc--cchHHHH
Confidence 99999999884332211 111222334332 3446789999988755 478999999999999 9999999
Q ss_pred HHHHHhCCC---cEEEEEeCCCCCcC
Q 002194 855 FNALKGHGA---LCRLVILPFESHGY 877 (954)
Q Consensus 855 ~~~l~~~g~---~~~~~~~~~~~H~~ 877 (954)
.++|+..+. ++-|..-.++||+-
T Consensus 632 vAkLR~~~td~~plLlkt~M~aGHgG 657 (682)
T COG1770 632 VAKLRELKTDGNPLLLKTNMDAGHGG 657 (682)
T ss_pred HHHHhhcccCCCcEEEEecccccCCC
Confidence 999998753 44555556789975
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-27 Score=241.74 Aligned_cols=196 Identities=26% Similarity=0.398 Sum_probs=166.2
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 779 (954)
...+.|+++||+|+.++++++.|+|..+.. ..+....++|+.+++++|++++.+|++||+|+|+|+||++++.++.+
T Consensus 5 ~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~ 84 (213)
T PF00326_consen 5 WNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQ 84 (213)
T ss_dssp HHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhcc
Confidence 356788899999999999999999887543 45567889999999999999999999999999999999999999999
Q ss_pred CCCcccEEEEeccCCCCCCCCCC---Ccc----ccchhhhcHHHHHhcCcccccCC--CCCCEEEEEeCCCCCCCCchHH
Q 002194 780 APHLFCCGIARSGAYNRTLTPFG---FQN----EDRTLWEATSTYVEMSPFMSANK--LKKPILLVHGEEDNNSGTLTMQ 850 (954)
Q Consensus 780 ~p~~~~a~v~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~sp~~~~~~--~~~P~Lii~G~~D~~v~~~~~~ 850 (954)
+|++|+|+|+.+|++|....... +.. .....+...+.|...+|+..+.+ +++|+||+||++|.+|| +.+
T Consensus 85 ~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp--~~~ 162 (213)
T PF00326_consen 85 HPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVP--PSQ 162 (213)
T ss_dssp TCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSST--THH
T ss_pred cceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccC--HHH
Confidence 99999999999999886543211 111 11333456777888899999998 89999999999999999 999
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhccc
Q 002194 851 SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (954)
+.+++++|+..|+++++++||+++|.+...+...+..+++++||+++|+.
T Consensus 163 s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 163 SLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLKK 212 (213)
T ss_dssp HHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999887888889999999999999864
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-24 Score=239.25 Aligned_cols=283 Identities=14% Similarity=0.120 Sum_probs=195.7
Q ss_pred HhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeee
Q 002194 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQ 183 (954)
Q Consensus 104 ~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt 183 (954)
+.+...-...+.++ +++|||+... .+.+.+... ..||+.+. || +..++||
T Consensus 132 D~~~~~~tg~~g~~--~~~iayv~~~-------------------~~~~~~~~~-----~~l~~~d~--dG--~~~~~lt 181 (428)
T PRK01029 132 DTIHYALTGVPGIS--SGKIIFSLST-------------------TNSDTELKQ-----GELWSVDY--DG--QNLRPLT 181 (428)
T ss_pred HHHHHHHcCCCccc--cCEEEEEEee-------------------CCccccccc-----ceEEEEcC--CC--CCceEcc
Confidence 33333334556666 9999999874 333332222 48999887 55 6778887
Q ss_pred cCCCCCcccceeecCCCCe--EEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 184 GFPDGAKLNFVTWSQDGKH--LAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 184 ~~~~~~~~~~~~wSPDG~~--iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
. ....+..|+|||||++ ++|++. .++..+||++++++|+.++++..+.. ...+.|||||+.|+|+
T Consensus 182 ~--~~~~~~sP~wSPDG~~~~~~y~S~------~~g~~~I~~~~l~~g~~~~lt~~~g~-----~~~p~wSPDG~~Laf~ 248 (428)
T PRK01029 182 Q--EHSLSITPTWMHIGSGFPYLYVSY------KLGVPKIFLGSLENPAGKKILALQGN-----QLMPTFSPRKKLLAFI 248 (428)
T ss_pred c--CCCCcccceEccCCCceEEEEEEc------cCCCceEEEEECCCCCceEeecCCCC-----ccceEECCCCCEEEEE
Confidence 5 2246789999999998 555664 44678999999999999999887664 3479999999999988
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEE--EEe-C---CceeEcCCC--cc
Q 002194 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL--VSL-D---GTVKEIGPP--AV 333 (954)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~--~~~-~---G~~~~l~~~--~~ 333 (954)
.... +..++|+ +++ + |+.++++.. +.
T Consensus 249 s~~~----------------------------------------------g~~di~~~~~~~~~g~~g~~~~lt~~~~~~ 282 (428)
T PRK01029 249 SDRY----------------------------------------------GNPDLFIQSFSLETGAIGKPRRLLNEAFGT 282 (428)
T ss_pred ECCC----------------------------------------------CCcceeEEEeecccCCCCcceEeecCCCCC
Confidence 2110 1123444 344 3 466777754 34
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc--CceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
...++|||||++|+|.+...+ ..++|+++++ ++..+.++... .....+.|||||+
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g----------~~~ly~~~~~~~g~~~~~lt~~~-------------~~~~~p~wSPDG~ 339 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDG----------RPRIYIMQIDPEGQSPRLLTKKY-------------RNSSCPAWSPDGK 339 (428)
T ss_pred cCCeEECCCCCEEEEEECCCC----------CceEEEEECcccccceEEeccCC-------------CCccceeECCCCC
Confidence 578999999999999985432 1278888876 34456666532 1224678999999
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
.|+|.... .+...|+++++ ++++.++++.....+..+.|||||+.|+|.....+ ...||.++++++
T Consensus 340 ~Laf~~~~----------~g~~~I~v~dl---~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g-~~~L~~vdl~~g 405 (428)
T PRK01029 340 KIAFCSVI----------KGVRQICVYDL---ATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSN-ESELYLISLITK 405 (428)
T ss_pred EEEEEEcC----------CCCcEEEEEEC---CCCCeEEccCCCCCccceEECCCCCEEEEEECCCC-CceEEEEECCCC
Confidence 99997321 12357999996 77888888876666788999999999999876544 378999999985
Q ss_pred CCCcEEEecCCCCCccCCCCCCCeeeccCC
Q 002194 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTG 521 (954)
Q Consensus 492 ~~~~~~l~~~~~~~~~~~~~~~~~~~spdG 521 (954)
+.+.++..... ... ++|||-.
T Consensus 406 --~~~~Lt~~~g~-~~~------p~Ws~~~ 426 (428)
T PRK01029 406 --KTRKIVIGSGE-KRF------PSWGAFP 426 (428)
T ss_pred --CEEEeecCCCc-ccC------ceecCCC
Confidence 45566543322 111 6788754
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=232.14 Aligned_cols=235 Identities=16% Similarity=0.201 Sum_probs=176.3
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
.+||+++. +| ...++++. ....+..|+|||||++|+|++. .++..+||++|+++|+.++++..++.
T Consensus 182 ~~l~~~d~--dg--~~~~~lt~--~~~~v~~p~wSpDG~~lay~s~------~~g~~~i~~~dl~~g~~~~l~~~~g~-- 247 (435)
T PRK05137 182 KRLAIMDQ--DG--ANVRYLTD--GSSLVLTPRFSPNRQEITYMSY------ANGRPRVYLLDLETGQRELVGNFPGM-- 247 (435)
T ss_pred eEEEEECC--CC--CCcEEEec--CCCCeEeeEECCCCCEEEEEEe------cCCCCEEEEEECCCCcEEEeecCCCc--
Confidence 48999987 44 56677764 2346889999999999999874 33568999999999999888866543
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
...+.|||||+.|+++... + +..+||++++
T Consensus 248 ---~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d~~ 278 (435)
T PRK05137 248 ---TFAPRFSPDGRKVVMSLSQ---------------------------------------G-------GNTDIYTMDLR 278 (435)
T ss_pred ---ccCcEECCCCCEEEEEEec---------------------------------------C-------CCceEEEEECC
Confidence 4589999999999887210 0 3456999999
Q ss_pred CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
+|..++++.. +....+.|||||++|+|.++..+ ..+||++|++++..++++... ..
T Consensus 279 ~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----------~~~Iy~~d~~g~~~~~lt~~~-------------~~ 335 (435)
T PRK05137 279 SGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----------SPQLYVMNADGSNPRRISFGG-------------GR 335 (435)
T ss_pred CCceEEccCCCCccCceeEcCCCCEEEEEECCCC----------CCeEEEEECCCCCeEEeecCC-------------Cc
Confidence 8888999877 56678999999999999985432 238999999998888887532 12
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
...+.|||||+.|+|... + .+...|+++++ +++..+.++.. ..+..++|||||+.|+|.....+..
T Consensus 336 ~~~~~~SpdG~~ia~~~~--~--------~~~~~i~~~d~---~~~~~~~lt~~-~~~~~p~~spDG~~i~~~~~~~~~~ 401 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQ--G--------GGQFSIGVMKP---DGSGERILTSG-FLVEGPTWAPNGRVIMFFRQTPGSG 401 (435)
T ss_pred ccCeEECCCCCEEEEEEc--C--------CCceEEEEEEC---CCCceEeccCC-CCCCCCeECCCCCEEEEEEccCCCC
Confidence 245789999999998731 1 12347889985 66666666543 3577899999999999988655431
Q ss_pred --eEEEEEcCCCCCCCcEEEe
Q 002194 481 --TRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 481 --~~l~~~d~~~~~~~~~~l~ 499 (954)
..||.++++++ ..+.+.
T Consensus 402 ~~~~L~~~dl~g~--~~~~l~ 420 (435)
T PRK05137 402 GAPKLYTVDLTGR--NEREVP 420 (435)
T ss_pred CcceEEEEECCCC--ceEEcc
Confidence 57999999885 334443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=226.98 Aligned_cols=234 Identities=15% Similarity=0.143 Sum_probs=175.3
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
.+||+++. || ...++++. ....+..|+|||||++|+|++. .++..+||++++++|+.++++..+..
T Consensus 179 ~~l~~~d~--dg--~~~~~lt~--~~~~~~~p~wSPDG~~la~~s~------~~g~~~i~i~dl~~G~~~~l~~~~~~-- 244 (429)
T PRK03629 179 YELRVSDY--DG--YNQFVVHR--SPQPLMSPAWSPDGSKLAYVTF------ESGRSALVIQTLANGAVRQVASFPRH-- 244 (429)
T ss_pred eeEEEEcC--CC--CCCEEeec--CCCceeeeEEcCCCCEEEEEEe------cCCCcEEEEEECCCCCeEEccCCCCC--
Confidence 48999998 44 55667764 2246889999999999999864 34567999999999999999866553
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
...+.|||||+.|+++... + +..+||++|+
T Consensus 245 ---~~~~~~SPDG~~La~~~~~---------------------------------------~-------g~~~I~~~d~~ 275 (429)
T PRK03629 245 ---NGAPAFSPDGSKLAFALSK---------------------------------------T-------GSLNLYVMDLA 275 (429)
T ss_pred ---cCCeEECCCCCEEEEEEcC---------------------------------------C-------CCcEEEEEECC
Confidence 4579999999999987210 0 3346999999
Q ss_pred CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
+|+.++++.. .....+.|||||++|+|++++.. ..+||++++++++.++++... ..
T Consensus 276 tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g----------~~~Iy~~d~~~g~~~~lt~~~-------------~~ 332 (429)
T PRK03629 276 SGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG----------RPQVYKVNINGGAPQRITWEG-------------SQ 332 (429)
T ss_pred CCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC----------CceEEEEECCCCCeEEeecCC-------------CC
Confidence 8888899877 66788999999999999985432 127889999988877776422 11
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
...+.|||||+.|+|.... .....|+++++ ++++.+.|+.. .....+.|||||+.|+|.+.+.+ .
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~----------~g~~~I~~~dl---~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~-~ 397 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSN----------GGQQHIAKQDL---ATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGM-G 397 (429)
T ss_pred ccCEEECCCCCEEEEEEcc----------CCCceEEEEEC---CCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCC-c
Confidence 2357899999999887221 12347899996 67777888743 34567999999999999987654 3
Q ss_pred eEEEEEcCCCCCCCcEEEe
Q 002194 481 TRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 481 ~~l~~~d~~~~~~~~~~l~ 499 (954)
..|++++++++ ..+.+.
T Consensus 398 ~~l~~~~~~G~--~~~~l~ 414 (429)
T PRK03629 398 SVLNLVSTDGR--FKARLP 414 (429)
T ss_pred eEEEEEECCCC--CeEECc
Confidence 67999999874 334443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=226.12 Aligned_cols=266 Identities=17% Similarity=0.157 Sum_probs=185.9
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEE--EEEecCCCCCCC
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL--VCTIPLLRGDPP 270 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l--~~~~~~~~~~~~ 270 (954)
.+..+ +++|||+....+...+....+||++|.+|+..++||..... ...+.|||||+.+ +|++.
T Consensus 141 ~~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~-----~~sP~wSPDG~~~~~~y~S~------- 206 (428)
T PRK01029 141 VPGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSL-----SITPTWMHIGSGFPYLYVSY------- 206 (428)
T ss_pred CCccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCC-----cccceEccCCCceEEEEEEc-------
Confidence 34455 88999998754222222367999999999999999986553 4589999999864 33411
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEE
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILI 348 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~ 348 (954)
.. +..+||++++ +|+.++++.. +....+.|||||++|+|
T Consensus 207 -------------------------------~~--------g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf 247 (428)
T PRK01029 207 -------------------------------KL--------GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAF 247 (428)
T ss_pred -------------------------------cC--------CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEE
Confidence 00 3467999999 8888888876 66678999999999999
Q ss_pred EeecCCcccccccCCCCcceEE--EeccC---ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGV--WTTDG---IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l--~d~~g---~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
++...+. .++++ |++++ +..++++.... .....++|||||+.|+|..+.
T Consensus 248 ~s~~~g~----------~di~~~~~~~~~g~~g~~~~lt~~~~------------~~~~~p~wSPDG~~Laf~s~~---- 301 (428)
T PRK01029 248 ISDRYGN----------PDLFIQSFSLETGAIGKPRRLLNEAF------------GTQGNPSFSPDGTRLVFVSNK---- 301 (428)
T ss_pred EECCCCC----------cceeEEEeecccCCCCcceEeecCCC------------CCcCCeEECCCCCEEEEEECC----
Confidence 9854321 14555 45553 35566664221 112357899999999997332
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCC
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 503 (954)
++...||+++++ ..++..++++.....+..+.|||||++|+|....++ ..+||++|++++ +.+.++....
T Consensus 302 ------~g~~~ly~~~~~-~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g-~~~I~v~dl~~g--~~~~Lt~~~~ 371 (428)
T PRK01029 302 ------DGRPRIYIMQID-PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG-VRQICVYDLATG--RDYQLTTSPE 371 (428)
T ss_pred ------CCCceEEEEECc-ccccceEEeccCCCCccceeECCCCCEEEEEEcCCC-CcEEEEEECCCC--CeEEccCCCC
Confidence 123478888851 123456777766666678999999999999876554 368999999886 4566664321
Q ss_pred CCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCc
Q 002194 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (954)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 572 (954)
.... +.|+|||++|+|.... .....||++|+++++.++|+...+
T Consensus 372 -~~~~------p~wSpDG~~L~f~~~~------------------~g~~~L~~vdl~~g~~~~Lt~~~g 415 (428)
T PRK01029 372 -NKES------PSWAIDSLHLVYSAGN------------------SNESELYLISLITKKTRKIVIGSG 415 (428)
T ss_pred -Cccc------eEECCCCCEEEEEECC------------------CCCceEEEEECCCCCEEEeecCCC
Confidence 1111 7899999999998621 123469999999999999987554
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-20 Score=204.85 Aligned_cols=290 Identities=20% Similarity=0.236 Sum_probs=211.2
Q ss_pred ccCCEEEEEEecCCCCceEEEEECCCCcee--EeecCCCCCCC--cCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCC
Q 002194 593 LNQLKILTSKESKTENTQYYIQSWPDKKSC--QITDFPHPYPQ--LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDG 668 (954)
Q Consensus 593 ~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~--~Lt~~~~~~~~--~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~ 668 (954)
.+.+.+.|..+|+.+|+.||.+|+.+++.+ .+.+....++. -+.+..+++++++.||.+|++.|+.-+.. +..+
T Consensus 391 ~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~--k~dg 468 (712)
T KOG2237|consen 391 FKSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDI--KLDG 468 (712)
T ss_pred CCCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEechh--hhcC
Confidence 346789999999999999999999988432 22222232333 34568999999999999999999985442 2334
Q ss_pred CccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhH---HHHHHHHHH
Q 002194 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFV---EQLVACAEA 745 (954)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~---~~~~~D~~~ 745 (954)
+.|++++.|||+.-+.+++ |. .....|.++|++....+-||..++|..+...... .+.++|+++
T Consensus 469 ~~P~LLygYGay~isl~p~---------f~----~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia 535 (712)
T KOG2237|consen 469 SKPLLLYGYGAYGISLDPS---------FR----ASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIA 535 (712)
T ss_pred CCceEEEEecccceeeccc---------cc----cceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHH
Confidence 6899999999864443332 21 1123567799988888888888888887643222 245899999
Q ss_pred HHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCC----CCccccchhhhcH---HHHH
Q 002194 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF----GFQNEDRTLWEAT---STYV 818 (954)
Q Consensus 746 av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~ 818 (954)
+++||++++++.|+++++.|.|.||.++..++.++|++|+|+|+..|+.|...+.. -.+.+....|.++ +.+.
T Consensus 536 ~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~~~~~~~ 615 (712)
T KOG2237|consen 536 CAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPEDFEDLI 615 (712)
T ss_pred HHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChhhhhhhh
Confidence 99999999999999999999999999999999999999999999999988543211 1112222233333 3455
Q ss_pred hcCcccccCCCC-----CCEEEEEeCCCCCCCCchHHHHHHHHHHHhC-------CCcEEEEEeCCCCCcCCCccc-HHH
Q 002194 819 EMSPFMSANKLK-----KPILLVHGEEDNNSGTLTMQSDRFFNALKGH-------GALCRLVILPFESHGYAARES-IMH 885 (954)
Q Consensus 819 ~~sp~~~~~~~~-----~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~-------g~~~~~~~~~~~~H~~~~~~~-~~~ 885 (954)
.++|+..+++++ .-+||..+.+|.+|+ +.++.++.++|+.. ..++-+.+..++||+...... ..+
T Consensus 616 ~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~--~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~ 693 (712)
T KOG2237|consen 616 KISPYSPVDNIKKQVQYPSMLVTTADHDDRVG--PLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIE 693 (712)
T ss_pred eecccCccCCCchhccCcceEEeeccCCCccc--ccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHH
Confidence 566666666553 348999999999998 99999999999875 135788889999998743322 223
Q ss_pred HHHHHHHHHHHhcc
Q 002194 886 VLWETDRWLQKYCV 899 (954)
Q Consensus 886 ~~~~i~~fl~~~l~ 899 (954)
....+++||.+.+.
T Consensus 694 E~a~~yaFl~K~~~ 707 (712)
T KOG2237|consen 694 EAAFRYAFLAKMLN 707 (712)
T ss_pred HHHHHHHHHHHHhc
Confidence 33446777777653
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-22 Score=220.71 Aligned_cols=231 Identities=11% Similarity=0.059 Sum_probs=172.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCe-EEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKH-LAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~-iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
.+||+.|. || ...++++. .+ ....|.|||||++ ++|++. .++..+||++|+.+|+.++++..++.
T Consensus 169 ~~l~~~d~--dg--~~~~~~~~--~~-~~~~p~wSpDG~~~i~y~s~------~~~~~~Iyv~dl~tg~~~~lt~~~g~- 234 (419)
T PRK04043 169 SNIVLADY--TL--TYQKVIVK--GG-LNIFPKWANKEQTAFYYTSY------GERKPTLYKYNLYTGKKEKIASSQGM- 234 (419)
T ss_pred ceEEEECC--CC--CceeEEcc--CC-CeEeEEECCCCCcEEEEEEc------cCCCCEEEEEECCCCcEEEEecCCCc-
Confidence 37899887 55 45666653 23 5778999999997 666553 22467999999999999999875543
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
...+.|||||+.|+++... + +..+||++++
T Consensus 235 ----~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~dl 264 (419)
T PRK04043 235 ----LVVSDVSKDGSKLLLTMAP---------------------------------------K-------GQPDIYLYDT 264 (419)
T ss_pred ----EEeeEECCCCCEEEEEEcc---------------------------------------C-------CCcEEEEEEC
Confidence 3468899999999987210 0 3467999999
Q ss_pred -CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCcccccccc
Q 002194 322 -DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (954)
Q Consensus 322 -~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~ 399 (954)
+|+.++|+.. +....+.|||||++|+|++++.. ..+||++|+++++.++++...
T Consensus 265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rlt~~g-------------- 320 (419)
T PRK04043 265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQVVFHG-------------- 320 (419)
T ss_pred CCCcEEEcccCCCccCccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeCccCC--------------
Confidence 8888999876 55678999999999999996532 238999999998888877521
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEecccc
Q 002194 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR 479 (954)
Q Consensus 400 g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (954)
.....|||||+.|+|.....+... . .....|+++++ ++++.++|+... ....++|||||+.|+|.....+
T Consensus 321 -~~~~~~SPDG~~Ia~~~~~~~~~~---~-~~~~~I~v~d~---~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~- 390 (419)
T PRK04043 321 -KNNSSVSTYKNYIVYSSRETNNEF---G-KNTFNLYLIST---NSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGN- 390 (419)
T ss_pred -CcCceECCCCCEEEEEEcCCCccc---C-CCCcEEEEEEC---CCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCC-
Confidence 123479999999999843221100 0 02358999996 778888898753 4457999999999999987644
Q ss_pred ceEEEEEcCCCC
Q 002194 480 RTRTWVISPGSK 491 (954)
Q Consensus 480 ~~~l~~~d~~~~ 491 (954)
...|+.+++++.
T Consensus 391 ~~~L~~~~l~g~ 402 (419)
T PRK04043 391 QSALGIIRLNYN 402 (419)
T ss_pred cEEEEEEecCCC
Confidence 478999999884
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-21 Score=198.92 Aligned_cols=387 Identities=18% Similarity=0.188 Sum_probs=239.5
Q ss_pred eecCC--CCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002194 115 SFSPQ--RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (954)
Q Consensus 115 ~~SPD--G~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~ 192 (954)
-+-|| |.+|.|+..+ +||.+++.. ++.++||. +-+-+.
T Consensus 43 ~l~PDI~GD~IiFt~~D----------------------------------dlWe~slk~----g~~~ritS--~lGVvn 82 (668)
T COG4946 43 YLNPDIYGDRIIFTCCD----------------------------------DLWEYSLKD----GKPLRITS--GLGVVN 82 (668)
T ss_pred hcCCcccCcEEEEEech----------------------------------HHHHhhhcc----CCeeEEec--ccceec
Confidence 34566 8999999985 899999865 67778874 224789
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecC-CCCCC--
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL-LRGDP-- 269 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~-~~~~~-- 269 (954)
.|.+||||++|||++-- ....-...+||+++.++|+++++|..+.. + -.-..|+|||++|+++--. .-.+.
T Consensus 83 n~kf~pdGrkvaf~rv~--~~ss~~taDly~v~~e~Ge~kRiTyfGr~-f---T~VaG~~~dg~iiV~TD~~tPF~q~~~ 156 (668)
T COG4946 83 NPKFSPDGRKVAFSRVM--LGSSLQTADLYVVPSEDGEAKRITYFGRR-F---TRVAGWIPDGEIIVSTDFHTPFSQWTE 156 (668)
T ss_pred cccCCCCCcEEEEEEEE--ecCCCccccEEEEeCCCCcEEEEEEeccc-c---ceeeccCCCCCEEEEeccCCCccccee
Confidence 99999999999995521 12344578999999999999999988532 1 2245699999999987100 00000
Q ss_pred --------CCCCCCCCCCceeecc-CCceeeechhhhhccCcc-------------cc----------------------
Q 002194 270 --------PKKPLVPLGPKMQSNE-KRDIIQVRTFQDLLKDEY-------------DE---------------------- 305 (954)
Q Consensus 270 --------~~~~~~~~~~~~~~~~-~~~~~~~r~~~d~l~~~~-------------d~---------------------- 305 (954)
.....++.|+...--. .++.+..|.+.|+-..+. |+
T Consensus 157 lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~ 236 (668)
T COG4946 157 LYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGE 236 (668)
T ss_pred eeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcc
Confidence 1112233343321111 112223333333221110 00
Q ss_pred ---ccccccccceEEEEEeCC-ceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEe
Q 002194 306 ---DLFDYYATTQLVLVSLDG-TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL 381 (954)
Q Consensus 306 ---~~~~~~~~~~l~~~~~~G-~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l 381 (954)
-..++.+.++||.+|++| ..++-|+...+..-..+.|||+|+|+. .++||++|.++..++.|
T Consensus 237 RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~--------------~GdIylydP~td~lekl 302 (668)
T COG4946 237 RVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQN--------------AGDIYLYDPETDSLEKL 302 (668)
T ss_pred eEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEec--------------CCcEEEeCCCcCcceee
Confidence 011222567889999955 567777664444455788999999997 33899999998777666
Q ss_pred ccC-CCc--ccCCcccc-----c---cccCccceeeccCCCCceEEEEec--------------------cCCCcccccc
Q 002194 382 CDL-PLA--EDIPIAFN-----S---VRKGMRSINWRSDKPSTLYWAETQ--------------------DGGDAKVEVT 430 (954)
Q Consensus 382 ~~~-~~~--~~~p~~~~-----~---~~~g~~~~~wspDg~~i~~~~~~~--------------------~~~~~~~~~~ 430 (954)
... |.. ...+...+ . +..| .-+++-.-|+. |..... ++........
T Consensus 303 dI~lpl~rk~k~~k~~~pskyledfa~~~G-d~ia~VSRGka--Fi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~ 379 (668)
T COG4946 303 DIGLPLDRKKKQPKFVNPSKYLEDFAVVNG-DYIALVSRGKA--FIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTN 379 (668)
T ss_pred ecCCccccccccccccCHHHhhhhhccCCC-cEEEEEecCcE--EEECCCCCeeEEcCCCCceEEEEEccCCcceEEecc
Confidence 543 332 11121111 0 0000 11222222221 111100 1110001112
Q ss_pred CCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCC
Q 002194 431 PRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510 (954)
Q Consensus 431 ~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~ 510 (954)
..+.|-+++. +|++.+++...-+.+..+..||||+.++.+. .+.+||++|+++| +++.+ +.+...+...
T Consensus 380 dgD~l~iyd~---~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN----dr~el~vididng--nv~~i-dkS~~~lItd- 448 (668)
T COG4946 380 DGDKLGIYDK---DGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN----DRFELWVIDIDNG--NVRLI-DKSEYGLITD- 448 (668)
T ss_pred CCceEEEEec---CCceEEEeeCCccceEEEEEcCCCcEEEEEc----CceEEEEEEecCC--CeeEe-cccccceeEE-
Confidence 2346778885 7888888888888899999999999988873 2378999999996 44444 3333333322
Q ss_pred CCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCcccc
Q 002194 511 GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGD 590 (954)
Q Consensus 511 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 590 (954)
..|+|+++|++|.... +++ ..+|.++|+++++...+|...+.+| .|+
T Consensus 449 ----f~~~~nsr~iAYafP~-----gy~------------tq~Iklydm~~~Kiy~vTT~ta~Df------------sPa 495 (668)
T COG4946 449 ----FDWHPNSRWIAYAFPE-----GYY------------TQSIKLYDMDGGKIYDVTTPTAYDF------------SPA 495 (668)
T ss_pred ----EEEcCCceeEEEecCc-----cee------------eeeEEEEecCCCeEEEecCCccccc------------Ccc
Confidence 7899999999999731 111 3469999999999999998775422 378
Q ss_pred ccccCCEEEEEEecCCCC
Q 002194 591 LYLNQLKILTSKESKTEN 608 (954)
Q Consensus 591 ~s~dg~~l~~~~~s~~~p 608 (954)
|+|||++|+|.....-.|
T Consensus 496 FD~d~ryLYfLs~RsLdP 513 (668)
T COG4946 496 FDPDGRYLYFLSARSLDP 513 (668)
T ss_pred cCCCCcEEEEEeccccCC
Confidence 999999998876655444
|
|
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=211.80 Aligned_cols=315 Identities=19% Similarity=0.216 Sum_probs=234.8
Q ss_pred eEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEeecCCCCCC
Q 002194 553 FLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYP 632 (954)
Q Consensus 553 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~~~~~ 632 (954)
.|.++++++-+.+.|.-.... ...+ .+-+.+|..+++...+.++|+.+|+.+..+++.+++...+.. .
T Consensus 320 ~l~v~~~~g~~~~~v~l~~~g-----a~~~------~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p~~-F 387 (648)
T COG1505 320 RLEVYDLKGERIEEVELPPPG-----ALGM------GSADKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQPVQ-F 387 (648)
T ss_pred eEEEeccCceEeeecccCCcc-----ceee------ccCCCCCcEEEEEeecccCCCceEEEecCCceehhhhhccCC-c
Confidence 477777776555555443321 1111 123457789999999999999999999888887777654322 2
Q ss_pred CcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC
Q 002194 633 QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG 712 (954)
Q Consensus 633 ~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G 712 (954)
+-+.+.++.+...|.||++|+.+++. ++.+.. +.|++|+.|||... .-.| .|. .....|+++|
T Consensus 388 Da~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d---~~pTll~aYGGF~v--------sltP-~fs----~~~~~WLerG 450 (648)
T COG1505 388 DADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD---ENPTLLYAYGGFNI--------SLTP-RFS----GSRKLWLERG 450 (648)
T ss_pred CccCceEEEEEEEcCCCccccEEEEe-cCCcCC---CCceEEEecccccc--------ccCC-ccc----hhhHHHHhcC
Confidence 34557789999999999999999998 664332 58999999998532 2222 222 2337899999
Q ss_pred cEEEEcCCCCCCCCCCcccchhh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEE
Q 002194 713 FAILGGPTTPIIGEGDEEANDRF---VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~---~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (954)
.+.+..+-+|...+|..+..... -...++|+.++++.|+++++..|+++++.|.|-||.++..++.++|+.|.|+|+
T Consensus 451 g~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~ 530 (648)
T COG1505 451 GVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVC 530 (648)
T ss_pred CeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceee
Confidence 88888777777777776553222 245689999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCC-----CCccccch--hhhcHHHHHhcCcccccCCC-C-CCEEEEEeCCCCCCCCchHHHHHHHHHHHh
Q 002194 790 RSGAYNRTLTPF-----GFQNEDRT--LWEATSTYVEMSPFMSANKL-K-KPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (954)
Q Consensus 790 ~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~sp~~~~~~~-~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~ 860 (954)
..|+.|+..+.. .+..+.+. ..++...+.++||+++++.- + .|+||-.+++|.+|+ +.|+++|+.+|+.
T Consensus 531 evPllDMlRYh~l~aG~sW~~EYG~Pd~P~d~~~l~~YSPy~nl~~g~kYP~~LITTs~~DDRVH--PaHarKfaa~L~e 608 (648)
T COG1505 531 EVPLLDMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLKPGQKYPPTLITTSLHDDRVH--PAHARKFAAKLQE 608 (648)
T ss_pred ccchhhhhhhcccccchhhHhhcCCCCCHHHHHHHHhcCchhcCCccccCCCeEEEccccccccc--chHHHHHHHHHHh
Confidence 999998654321 11112111 12334567789999998763 3 589999999999999 9999999999999
Q ss_pred CCCcEEEEEeCCCCCcCCCcccH-HHHHHHHHHHHHHhc
Q 002194 861 HGALCRLVILPFESHGYAARESI-MHVLWETDRWLQKYC 898 (954)
Q Consensus 861 ~g~~~~~~~~~~~~H~~~~~~~~-~~~~~~i~~fl~~~l 898 (954)
.+.++-+.+--++||+-...... ......++.||.+.|
T Consensus 609 ~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L 647 (648)
T COG1505 609 VGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTL 647 (648)
T ss_pred cCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhh
Confidence 99888887777889987544332 344556788888876
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=220.57 Aligned_cols=227 Identities=18% Similarity=0.176 Sum_probs=168.6
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcccc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (954)
+||+++. +| ...++++. ....+..|+|||||++|+|++. .++..+||++|+++|+.++++..+..
T Consensus 177 ~L~~~D~--dG--~~~~~l~~--~~~~v~~p~wSPDG~~la~~s~------~~~~~~I~~~dl~~g~~~~l~~~~g~--- 241 (427)
T PRK02889 177 QLQISDA--DG--QNAQSALS--SPEPIISPAWSPDGTKLAYVSF------ESKKPVVYVHDLATGRRRVVANFKGS--- 241 (427)
T ss_pred EEEEECC--CC--CCceEecc--CCCCcccceEcCCCCEEEEEEc------cCCCcEEEEEECCCCCEEEeecCCCC---
Confidence 7899887 44 44566653 2346889999999999999874 34567899999999998888765542
Q ss_pred ccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C
Q 002194 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (954)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~ 322 (954)
...+.|||||+.|+++... + +..+||.+++ +
T Consensus 242 --~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d~~~ 273 (427)
T PRK02889 242 --NSAPAWSPDGRTLAVALSR---------------------------------------D-------GNSQIYTVNADG 273 (427)
T ss_pred --ccceEECCCCCEEEEEEcc---------------------------------------C-------CCceEEEEECCC
Confidence 4579999999999886210 0 3457999999 7
Q ss_pred CceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCc
Q 002194 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (954)
Q Consensus 323 G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~ 401 (954)
+..++++.. +....+.|||||++|+|++++.. ..++|+++++++..++++.... ..
T Consensus 274 ~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g----------~~~Iy~~~~~~g~~~~lt~~g~-------------~~ 330 (427)
T PRK02889 274 SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG----------APQIYRMPASGGAAQRVTFTGS-------------YN 330 (427)
T ss_pred CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC----------CcEEEEEECCCCceEEEecCCC-------------Cc
Confidence 788888876 55678999999999999885432 1278888888777777764211 12
Q ss_pred cceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccce
Q 002194 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (954)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 481 (954)
..++|||||+.|+|.... .....|+++++ .+++.++++... ....+.|+|||+.|+|..+.++ ..
T Consensus 331 ~~~~~SpDG~~Ia~~s~~----------~g~~~I~v~d~---~~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~~g-~~ 395 (427)
T PRK02889 331 TSPRISPDGKLLAYISRV----------GGAFKLYVQDL---ATGQVTALTDTT-RDESPSFAPNGRYILYATQQGG-RS 395 (427)
T ss_pred CceEECCCCCEEEEEEcc----------CCcEEEEEEEC---CCCCeEEccCCC-CccCceECCCCCEEEEEEecCC-CE
Confidence 357899999999987321 11237999996 667777776543 3478999999999999988765 47
Q ss_pred EEEEEcCCCC
Q 002194 482 RTWVISPGSK 491 (954)
Q Consensus 482 ~l~~~d~~~~ 491 (954)
.|+.+++++.
T Consensus 396 ~l~~~~~~g~ 405 (427)
T PRK02889 396 VLAAVSSDGR 405 (427)
T ss_pred EEEEEECCCC
Confidence 8999999763
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-21 Score=219.21 Aligned_cols=228 Identities=18% Similarity=0.137 Sum_probs=170.2
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..|++++. +| ...+.|+.. ...+..|.|||||++|+|++. .++..+||++|+++|+.++++..+..
T Consensus 198 ~~l~i~d~--dG--~~~~~l~~~--~~~~~~p~wSPDG~~La~~s~------~~g~~~L~~~dl~tg~~~~lt~~~g~-- 263 (448)
T PRK04792 198 YQLMIADY--DG--YNEQMLLRS--PEPLMSPAWSPDGRKLAYVSF------ENRKAEIFVQDIYTQVREKVTSFPGI-- 263 (448)
T ss_pred eEEEEEeC--CC--CCceEeecC--CCcccCceECCCCCEEEEEEe------cCCCcEEEEEECCCCCeEEecCCCCC--
Confidence 37888887 44 455667542 346889999999999999874 34578999999999998888765542
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
...+.|||||+.|+++... + +..+||++++
T Consensus 264 ---~~~~~wSPDG~~La~~~~~---------------------------------------~-------g~~~Iy~~dl~ 294 (448)
T PRK04792 264 ---NGAPRFSPDGKKLALVLSK---------------------------------------D-------GQPEIYVVDIA 294 (448)
T ss_pred ---cCCeeECCCCCEEEEEEeC---------------------------------------C-------CCeEEEEEECC
Confidence 3478999999999987210 0 3457999999
Q ss_pred CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
+|+.++++.. .....++|||||++|+|++.... ..++|++++++++.++++.... .
T Consensus 295 tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g----------~~~Iy~~dl~~g~~~~Lt~~g~-------------~ 351 (448)
T PRK04792 295 TKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG----------KPQIYRVNLASGKVSRLTFEGE-------------Q 351 (448)
T ss_pred CCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEEecCCC-------------C
Confidence 8888888876 56678999999999999985432 2389999999888887764211 1
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
...++|||||+.|+|.... .....|+++++ ++++.+.++... ....++|+|||+.|+|....++ .
T Consensus 352 ~~~~~~SpDG~~l~~~~~~----------~g~~~I~~~dl---~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g-~ 416 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRT----------NGKFNIARQDL---ETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQG-K 416 (448)
T ss_pred CcCeeECCCCCEEEEEEec----------CCceEEEEEEC---CCCCeEEccCCC-CCCCceECCCCCEEEEEEecCC-c
Confidence 1246899999998886221 12347889986 667777776543 3457899999999999987665 3
Q ss_pred eEEEEEcCCCC
Q 002194 481 TRTWVISPGSK 491 (954)
Q Consensus 481 ~~l~~~d~~~~ 491 (954)
..||.++.++.
T Consensus 417 ~~l~~~~~~G~ 427 (448)
T PRK04792 417 QVLAAVSIDGR 427 (448)
T ss_pred eEEEEEECCCC
Confidence 67999998764
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-21 Score=215.61 Aligned_cols=252 Identities=17% Similarity=0.176 Sum_probs=185.8
Q ss_pred CeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002194 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (954)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (954)
++|||+.... ++....+||++|.+|+..+++|..... +..++|||||+.|+|+....
T Consensus 164 ~riayv~~~~---~~~~~~~l~~~d~dg~~~~~lt~~~~~-----~~~p~wSPDG~~la~~s~~~--------------- 220 (429)
T PRK03629 164 TRIAYVVQTN---GGQFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFES--------------- 220 (429)
T ss_pred CeEEEEEeeC---CCCcceeEEEEcCCCCCCEEeecCCCc-----eeeeEEcCCCCEEEEEEecC---------------
Confidence 7899987632 123467999999999998999876543 56899999999999872100
Q ss_pred eeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccc
Q 002194 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (954)
Q Consensus 281 ~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~ 358 (954)
+..+||++++ +|+.+.++.. +....+.|||||++|+|......
T Consensus 221 -------------------------------g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g---- 265 (429)
T PRK03629 221 -------------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG---- 265 (429)
T ss_pred -------------------------------CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC----
Confidence 2356999999 8888888765 55678999999999999864321
Q ss_pred cccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEE
Q 002194 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (954)
Q Consensus 359 ~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (954)
..+||+||+++++.++++.... ....+.|||||+.|+|..+. .+..+||++
T Consensus 266 ------~~~I~~~d~~tg~~~~lt~~~~-------------~~~~~~wSPDG~~I~f~s~~----------~g~~~Iy~~ 316 (429)
T PRK03629 266 ------SLNLYVMDLASGQIRQVTDGRS-------------NNTEPTWFPDSQNLAYTSDQ----------AGRPQVYKV 316 (429)
T ss_pred ------CcEEEEEECCCCCEEEccCCCC-------------CcCceEECCCCCEEEEEeCC----------CCCceEEEE
Confidence 1279999999888888876431 22468899999999998322 123479999
Q ss_pred ecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeec
Q 002194 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (954)
Q Consensus 439 ~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s 518 (954)
++ ++++.++++........+.|||||++|+|....++ ...||+++++++ +.+.++... .+ . . ++||
T Consensus 317 d~---~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g-~~~I~~~dl~~g--~~~~Lt~~~-~~-~----~--p~~S 382 (429)
T PRK03629 317 NI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG-QQHIAKQDLATG--GVQVLTDTF-LD-E----T--PSIA 382 (429)
T ss_pred EC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEccCC-CceEEEEECCCC--CeEEeCCCC-CC-C----C--ceEC
Confidence 86 67777888765555667999999999999876554 367999999886 456665421 11 1 1 6799
Q ss_pred cCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccC
Q 002194 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 519 pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
|||++|+|.... +....|++++++++..++|...+
T Consensus 383 pDG~~i~~~s~~------------------~~~~~l~~~~~~G~~~~~l~~~~ 417 (429)
T PRK03629 383 PNGTMVIYSSSQ------------------GMGSVLNLVSTDGRFKARLPATD 417 (429)
T ss_pred CCCCEEEEEEcC------------------CCceEEEEEECCCCCeEECccCC
Confidence 999999998732 12345999999888888887544
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-21 Score=219.76 Aligned_cols=234 Identities=15% Similarity=0.108 Sum_probs=173.9
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
.+||++|. +| ...++|+.. +..+..|+|||||++|+|++. .++..+||++++++|+.++++..+..
T Consensus 184 ~~l~i~D~--~g--~~~~~lt~~--~~~v~~p~wSpDg~~la~~s~------~~~~~~l~~~dl~~g~~~~l~~~~g~-- 249 (433)
T PRK04922 184 YALQVADS--DG--YNPQTILRS--AEPILSPAWSPDGKKLAYVSF------ERGRSAIYVQDLATGQRELVASFRGI-- 249 (433)
T ss_pred EEEEEECC--CC--CCceEeecC--CCccccccCCCCCCEEEEEec------CCCCcEEEEEECCCCCEEEeccCCCC--
Confidence 47999987 34 556777642 346889999999999999864 33578999999999998888765542
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
...+.|||||+.|+++... + +..+||++++
T Consensus 250 ---~~~~~~SpDG~~l~~~~s~---------------------------------------~-------g~~~Iy~~d~~ 280 (433)
T PRK04922 250 ---NGAPSFSPDGRRLALTLSR---------------------------------------D-------GNPEIYVMDLG 280 (433)
T ss_pred ---ccCceECCCCCEEEEEEeC---------------------------------------C-------CCceEEEEECC
Confidence 3478999999999887210 0 3356999999
Q ss_pred CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
+|+.++++.. .....++|||||++|+|.++... ..++|++++++++.++++.... .
T Consensus 281 ~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~lt~~g~-------------~ 337 (433)
T PRK04922 281 SRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAERLTFQGN-------------Y 337 (433)
T ss_pred CCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEeecCCC-------------C
Confidence 8888888876 55578999999999999985432 1279999998887777764211 1
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
...++|||||+.|+|... + +....|+++++ .+++.+.++... ....+.|||||+.|+|.++..+ .
T Consensus 338 ~~~~~~SpDG~~Ia~~~~--~--------~~~~~I~v~d~---~~g~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~~g-~ 402 (433)
T PRK04922 338 NARASVSPDGKKIAMVHG--S--------GGQYRIAVMDL---STGSVRTLTPGS-LDESPSFAPNGSMVLYATREGG-R 402 (433)
T ss_pred ccCEEECCCCCEEEEEEC--C--------CCceeEEEEEC---CCCCeEECCCCC-CCCCceECCCCCEEEEEEecCC-c
Confidence 235789999999988722 1 12347899996 667777887554 3567899999999999987654 4
Q ss_pred eEEEEEcCCCCCCCcEEEe
Q 002194 481 TRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 481 ~~l~~~d~~~~~~~~~~l~ 499 (954)
..||.++++++ ....++
T Consensus 403 ~~L~~~~~~g~--~~~~l~ 419 (433)
T PRK04922 403 GVLAAVSTDGR--VRQRLV 419 (433)
T ss_pred eEEEEEECCCC--ceEEcc
Confidence 78999999874 334444
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-21 Score=218.40 Aligned_cols=255 Identities=14% Similarity=0.148 Sum_probs=186.3
Q ss_pred CCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCC
Q 002194 200 GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGP 279 (954)
Q Consensus 200 G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~ 279 (954)
+.+|+|++... .......+||++|.+|+..+++|..... +..+.|||||+.|+|+...
T Consensus 165 ~~~iafv~~~~--~~~~~~~~l~~~d~dg~~~~~lt~~~~~-----v~~p~wSpDG~~lay~s~~--------------- 222 (435)
T PRK05137 165 DTRIVYVAESG--PKNKRIKRLAIMDQDGANVRYLTDGSSL-----VLTPRFSPNRQEITYMSYA--------------- 222 (435)
T ss_pred CCeEEEEEeeC--CCCCcceEEEEECCCCCCcEEEecCCCC-----eEeeEECCCCCEEEEEEec---------------
Confidence 46899987532 0111267999999999999999876553 6689999999999987210
Q ss_pred ceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCccc
Q 002194 280 KMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (954)
Q Consensus 280 ~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~ 357 (954)
. +..+||++++ +|+.++++.. +....+.|||||+.|+|+.....
T Consensus 223 -----------------------~--------g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g--- 268 (435)
T PRK05137 223 -----------------------N--------GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG--- 268 (435)
T ss_pred -----------------------C--------CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC---
Confidence 0 2357999999 8888888765 66678999999999999874432
Q ss_pred ccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEE
Q 002194 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (954)
Q Consensus 358 ~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~ 437 (954)
..+||++|++++..++++..+.. ...+.|||||+.|+|..+. .+..+||+
T Consensus 269 -------~~~Iy~~d~~~~~~~~Lt~~~~~-------------~~~~~~spDG~~i~f~s~~----------~g~~~Iy~ 318 (435)
T PRK05137 269 -------NTDIYTMDLRSGTTTRLTDSPAI-------------DTSPSYSPDGSQIVFESDR----------SGSPQLYV 318 (435)
T ss_pred -------CceEEEEECCCCceEEccCCCCc-------------cCceeEcCCCCEEEEEECC----------CCCCeEEE
Confidence 23799999999888888765421 2457899999999987322 22347999
Q ss_pred EecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeee
Q 002194 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRR 517 (954)
Q Consensus 438 ~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 517 (954)
+++ ++++.++++........+.|||||+.|+|.....+ ..+|++++++++ ..+.++... .... ++|
T Consensus 319 ~d~---~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~-~~~i~~~d~~~~--~~~~lt~~~--~~~~------p~~ 384 (435)
T PRK05137 319 MNA---DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGG-QFSIGVMKPDGS--GERILTSGF--LVEG------PTW 384 (435)
T ss_pred EEC---CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCC-ceEEEEEECCCC--ceEeccCCC--CCCC------CeE
Confidence 996 77788888876666777999999999999875443 368999998774 334454321 1111 679
Q ss_pred ccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEec
Q 002194 518 TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (954)
Q Consensus 518 spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 569 (954)
||||++|+|.....+ .. ....||++|++++..+++..
T Consensus 385 spDG~~i~~~~~~~~--------------~~-~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 385 APNGRVIMFFRQTPG--------------SG-GAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred CCCCCEEEEEEccCC--------------CC-CcceEEEEECCCCceEEccC
Confidence 999999999873210 00 02469999999988887763
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=216.36 Aligned_cols=227 Identities=15% Similarity=0.168 Sum_probs=169.9
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcccc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (954)
.|++++. +| +..++++. .+..+..|+|||||++|+|++. .++..+||++++++|+.++++...+.
T Consensus 180 ~l~~~d~--~g--~~~~~l~~--~~~~~~~p~wSpDG~~la~~s~------~~~~~~l~~~~l~~g~~~~l~~~~g~--- 244 (430)
T PRK00178 180 TLQRSDY--DG--ARAVTLLQ--SREPILSPRWSPDGKRIAYVSF------EQKRPRIFVQNLDTGRREQITNFEGL--- 244 (430)
T ss_pred EEEEECC--CC--CCceEEec--CCCceeeeeECCCCCEEEEEEc------CCCCCEEEEEECCCCCEEEccCCCCC---
Confidence 6888877 44 55666754 3346789999999999999874 33567999999999999988765542
Q ss_pred ccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C
Q 002194 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (954)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~ 322 (954)
...+.|||||+.|+|+... + +..+||++|+ +
T Consensus 245 --~~~~~~SpDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d~~~ 276 (430)
T PRK00178 245 --NGAPAWSPDGSKLAFVLSK---------------------------------------D-------GNPEIYVMDLAS 276 (430)
T ss_pred --cCCeEECCCCCEEEEEEcc---------------------------------------C-------CCceEEEEECCC
Confidence 4479999999999987210 0 2356999999 8
Q ss_pred CceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCc
Q 002194 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (954)
Q Consensus 323 G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~ 401 (954)
|+.++++.. .....+.|||||++|+|.+...+ ..+|+++++++++.++++.... ..
T Consensus 277 ~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g----------~~~iy~~d~~~g~~~~lt~~~~-------------~~ 333 (430)
T PRK00178 277 RQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG----------KPQIYKVNVNGGRAERVTFVGN-------------YN 333 (430)
T ss_pred CCeEEcccCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCCC-------------Cc
Confidence 888888876 56678999999999999985432 2379999998887777764211 11
Q ss_pred cceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccce
Q 002194 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (954)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 481 (954)
..+.|||||+.|+|.... .....|+++++ .+++.+.++... ....+.|||||+.|+|.++..+ ..
T Consensus 334 ~~~~~Spdg~~i~~~~~~----------~~~~~l~~~dl---~tg~~~~lt~~~-~~~~p~~spdg~~i~~~~~~~g-~~ 398 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQ----------DGNFHVAAQDL---QRGSVRILTDTS-LDESPSVAPNGTMLIYATRQQG-RG 398 (430)
T ss_pred cceEECCCCCEEEEEEcc----------CCceEEEEEEC---CCCCEEEccCCC-CCCCceECCCCCEEEEEEecCC-ce
Confidence 357899999998887321 11336899996 667778887643 3457899999999999987665 47
Q ss_pred EEEEEcCCCC
Q 002194 482 RTWVISPGSK 491 (954)
Q Consensus 482 ~l~~~d~~~~ 491 (954)
.||.++++++
T Consensus 399 ~l~~~~~~g~ 408 (430)
T PRK00178 399 VLMLVSINGR 408 (430)
T ss_pred EEEEEECCCC
Confidence 8999999874
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-20 Score=207.41 Aligned_cols=250 Identities=15% Similarity=0.116 Sum_probs=181.7
Q ss_pred CeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeE-EEEEecCCCCCCCCCCCCCCCC
Q 002194 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL-LVCTIPLLRGDPPKKPLVPLGP 279 (954)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~-l~~~~~~~~~~~~~~~~~~~~~ 279 (954)
.+|+|..... +....+||++|.+|...++++... . ...+.|||||+. ++|+..
T Consensus 155 ~r~~~v~~~~----~~~~~~l~~~d~dg~~~~~~~~~~-~-----~~~p~wSpDG~~~i~y~s~---------------- 208 (419)
T PRK04043 155 KRKVVFSKYT----GPKKSNIVLADYTLTYQKVIVKGG-L-----NIFPKWANKEQTAFYYTSY---------------- 208 (419)
T ss_pred eeEEEEEEcc----CCCcceEEEECCCCCceeEEccCC-C-----eEeEEECCCCCcEEEEEEc----------------
Confidence 4666665311 224789999999999888887654 2 458999999985 776511
Q ss_pred ceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCccc
Q 002194 280 KMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (954)
Q Consensus 280 ~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~ 357 (954)
+ . +..+||++|+ +|+.++++.. +....+.|||||++|+|.....+
T Consensus 209 -----~-----------------~--------~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g--- 255 (419)
T PRK04043 209 -----G-----------------E--------RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKG--- 255 (419)
T ss_pred -----c-----------------C--------CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCC---
Confidence 1 0 1346999999 8999999866 55667899999999999875432
Q ss_pred ccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEE
Q 002194 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (954)
Q Consensus 358 ~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~ 437 (954)
..+||++++++++.++|+..+... ..+.|||||++|+|..+. .+..+||+
T Consensus 256 -------~~~Iy~~dl~~g~~~~LT~~~~~d-------------~~p~~SPDG~~I~F~Sdr----------~g~~~Iy~ 305 (419)
T PRK04043 256 -------QPDIYLYDTNTKTLTQITNYPGID-------------VNGNFVEDDKRIVFVSDR----------LGYPNIFM 305 (419)
T ss_pred -------CcEEEEEECCCCcEEEcccCCCcc-------------CccEECCCCCEEEEEECC----------CCCceEEE
Confidence 248999999999889998755321 246799999999998543 22458999
Q ss_pred EecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccc-----cceEEEEEcCCCCCCCcEEEecCCCCCccCCCCC
Q 002194 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT-----RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGS 512 (954)
Q Consensus 438 ~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~-----~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 512 (954)
+++ ++++.++++.... ....|||||+.|+|...... ...+||+++++++ +.+.++.... + .
T Consensus 306 ~dl---~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g--~~~~LT~~~~-~-----~- 371 (419)
T PRK04043 306 KKL---NSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD--YIRRLTANGV-N-----Q- 371 (419)
T ss_pred EEC---CCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC--CeEECCCCCC-c-----C-
Confidence 996 7788877765322 23699999999999986532 2268999999886 5677766421 1 1
Q ss_pred CCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCc
Q 002194 513 PMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (954)
Q Consensus 513 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 572 (954)
.++|||||+.|+|.... +....|+.+++++...+++....+
T Consensus 372 -~p~~SPDG~~I~f~~~~------------------~~~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 372 -FPRFSSDGGSIMFIKYL------------------GNQSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred -CeEECCCCCEEEEEEcc------------------CCcEEEEEEecCCCeeEEeecCCC
Confidence 16799999999998731 233469999999888887866443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-20 Score=207.83 Aligned_cols=252 Identities=15% Similarity=0.121 Sum_probs=182.2
Q ss_pred CeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002194 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (954)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (954)
.+|+|+.... ......+||++|.+|...+.++..... +..+.|||||+.|+|+...
T Consensus 183 ~riayv~~~~---~~~~~~~l~i~d~dG~~~~~l~~~~~~-----~~~p~wSPDG~~La~~s~~---------------- 238 (448)
T PRK04792 183 TRIAYVVVND---KDKYPYQLMIADYDGYNEQMLLRSPEP-----LMSPAWSPDGRKLAYVSFE---------------- 238 (448)
T ss_pred CEEEEEEeeC---CCCCceEEEEEeCCCCCceEeecCCCc-----ccCceECCCCCEEEEEEec----------------
Confidence 5788887532 122257999999999888888877653 5689999999999987210
Q ss_pred eeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccc
Q 002194 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (954)
Q Consensus 281 ~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~ 358 (954)
+ +..+||++|+ +|+.++++.. +....+.|||||++|+|+.....
T Consensus 239 -----------------------~-------g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g---- 284 (448)
T PRK04792 239 -----------------------N-------RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG---- 284 (448)
T ss_pred -----------------------C-------CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC----
Confidence 0 3357999999 8888888765 55568999999999999864432
Q ss_pred cccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEE
Q 002194 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (954)
Q Consensus 359 ~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (954)
..+||++|+++++.++++.... ....++|||||+.|+|..+. ....+||++
T Consensus 285 ------~~~Iy~~dl~tg~~~~lt~~~~-------------~~~~p~wSpDG~~I~f~s~~----------~g~~~Iy~~ 335 (448)
T PRK04792 285 ------QPEIYVVDIATKALTRITRHRA-------------IDTEPSWHPDGKSLIFTSER----------GGKPQIYRV 335 (448)
T ss_pred ------CeEEEEEECCCCCeEECccCCC-------------CccceEECCCCCEEEEEECC----------CCCceEEEE
Confidence 2379999999888888876431 12457899999999887321 224589999
Q ss_pred ecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeec
Q 002194 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (954)
Q Consensus 439 ~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s 518 (954)
++ ++++.++++........++|||||+.|+|.....+ ..+||.++++++ +...++.... + .. ++|+
T Consensus 336 dl---~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g-~~~I~~~dl~~g--~~~~lt~~~~-d-----~~--ps~s 401 (448)
T PRK04792 336 NL---ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNG-KFNIARQDLETG--AMQVLTSTRL-D-----ES--PSVA 401 (448)
T ss_pred EC---CCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCC-ceEEEEEECCCC--CeEEccCCCC-C-----CC--ceEC
Confidence 96 67777777644333456899999999999876544 368999999886 4455554321 1 11 5799
Q ss_pred cCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccC
Q 002194 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 519 pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
|||++|+|.... +....||+++.+++..+++....
T Consensus 402 pdG~~I~~~~~~------------------~g~~~l~~~~~~G~~~~~l~~~~ 436 (448)
T PRK04792 402 PNGTMVIYSTTY------------------QGKQVLAAVSIDGRFKARLPAGQ 436 (448)
T ss_pred CCCCEEEEEEec------------------CCceEEEEEECCCCceEECcCCC
Confidence 999999998731 12345999999888777776544
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-20 Score=208.79 Aligned_cols=254 Identities=16% Similarity=0.143 Sum_probs=184.0
Q ss_pred CCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCC
Q 002194 200 GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGP 279 (954)
Q Consensus 200 G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~ 279 (954)
+.+|+|+.... ..+....+||++|.+++..++++..... +..+.|||||+.|+|+...
T Consensus 167 ~~~ia~v~~~~--~~~~~~~~l~i~D~~g~~~~~lt~~~~~-----v~~p~wSpDg~~la~~s~~--------------- 224 (433)
T PRK04922 167 WTRIAYVTVSG--AGGAMRYALQVADSDGYNPQTILRSAEP-----ILSPAWSPDGKKLAYVSFE--------------- 224 (433)
T ss_pred cceEEEEEEeC--CCCCceEEEEEECCCCCCceEeecCCCc-----cccccCCCCCCEEEEEecC---------------
Confidence 35799987532 1223467899999999888999876543 5689999999999987210
Q ss_pred ceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCccc
Q 002194 280 KMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (954)
Q Consensus 280 ~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~ 357 (954)
. +..+||++++ +|+.++++.. +....+.|||||++|+|.....+
T Consensus 225 -----------------------~--------~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g--- 270 (433)
T PRK04922 225 -----------------------R--------GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG--- 270 (433)
T ss_pred -----------------------C--------CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC---
Confidence 0 2356999999 7888888765 55568999999999999864432
Q ss_pred ccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEE
Q 002194 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (954)
Q Consensus 358 ~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~ 437 (954)
..+|+++++++++.++++..... ...++|||||+.|+|..+. .+...||+
T Consensus 271 -------~~~Iy~~d~~~g~~~~lt~~~~~-------------~~~~~~spDG~~l~f~sd~----------~g~~~iy~ 320 (433)
T PRK04922 271 -------NPEIYVMDLGSRQLTRLTNHFGI-------------DTEPTWAPDGKSIYFTSDR----------GGRPQIYR 320 (433)
T ss_pred -------CceEEEEECCCCCeEECccCCCC-------------ccceEECCCCCEEEEEECC----------CCCceEEE
Confidence 23799999998888887764311 2357899999999987322 12347999
Q ss_pred EecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeee
Q 002194 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRR 517 (954)
Q Consensus 438 ~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 517 (954)
+++ ++++.++++........++|||||++|+|....++ ..+|++++++++ +.+.++.... + .. +.|
T Consensus 321 ~dl---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~-~~~I~v~d~~~g--~~~~Lt~~~~-~-~~------p~~ 386 (433)
T PRK04922 321 VAA---SGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGG-QYRIAVMDLSTG--SVRTLTPGSL-D-ES------PSF 386 (433)
T ss_pred EEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEECCCC-ceeEEEEECCCC--CeEECCCCCC-C-CC------ceE
Confidence 986 66777777654444557999999999999865433 358999999875 4556654321 1 11 679
Q ss_pred ccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccC
Q 002194 518 TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 518 spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
+|||++|+|.... +....||.++++++..++++...
T Consensus 387 spdG~~i~~~s~~------------------~g~~~L~~~~~~g~~~~~l~~~~ 422 (433)
T PRK04922 387 APNGSMVLYATRE------------------GGRGVLAAVSTDGRVRQRLVSAD 422 (433)
T ss_pred CCCCCEEEEEEec------------------CCceEEEEEECCCCceEEcccCC
Confidence 9999999998732 12456999999988888887654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9e-20 Score=206.89 Aligned_cols=250 Identities=16% Similarity=0.163 Sum_probs=179.5
Q ss_pred CeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002194 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (954)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (954)
.+|+|+.. ..+..+||++|.+|...++++..... +..++|||||+.|+|+...
T Consensus 164 ~~iayv~~------~~~~~~L~~~D~dG~~~~~l~~~~~~-----v~~p~wSPDG~~la~~s~~---------------- 216 (427)
T PRK02889 164 TRIAYVIK------TGNRYQLQISDADGQNAQSALSSPEP-----IISPAWSPDGTKLAYVSFE---------------- 216 (427)
T ss_pred cEEEEEEc------cCCccEEEEECCCCCCceEeccCCCC-----cccceEcCCCCEEEEEEcc----------------
Confidence 57999863 23467999999998888888765553 6689999999999987210
Q ss_pred eeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccc
Q 002194 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (954)
Q Consensus 281 ~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~ 358 (954)
+ +..+||++|+ +|+.++++.. +....+.|||||++|+|+.....
T Consensus 217 -----------------------~-------~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g---- 262 (427)
T PRK02889 217 -----------------------S-------KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG---- 262 (427)
T ss_pred -----------------------C-------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC----
Confidence 0 2346999999 8888888754 66678999999999999764432
Q ss_pred cccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEE
Q 002194 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (954)
Q Consensus 359 ~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (954)
..+||+++++++..++++.... ....+.|||||+.|+|..+. .+...||.+
T Consensus 263 ------~~~Iy~~d~~~~~~~~lt~~~~-------------~~~~~~wSpDG~~l~f~s~~----------~g~~~Iy~~ 313 (427)
T PRK02889 263 ------NSQIYTVNADGSGLRRLTQSSG-------------IDTEPFFSPDGRSIYFTSDR----------GGAPQIYRM 313 (427)
T ss_pred ------CceEEEEECCCCCcEECCCCCC-------------CCcCeEEcCCCCEEEEEecC----------CCCcEEEEE
Confidence 2378889988887777766431 12357899999999886321 123478888
Q ss_pred ecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeec
Q 002194 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (954)
Q Consensus 439 ~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s 518 (954)
++ ++++.++++........++|||||++|+|.+..++ ..+|++++++++ +.+.++..... . .++|+
T Consensus 314 ~~---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g-~~~I~v~d~~~g--~~~~lt~~~~~--~------~p~~s 379 (427)
T PRK02889 314 PA---SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGG-AFKLYVQDLATG--QVTALTDTTRD--E------SPSFA 379 (427)
T ss_pred EC---CCCceEEEecCCCCcCceEECCCCCEEEEEEccCC-cEEEEEEECCCC--CeEEccCCCCc--c------CceEC
Confidence 85 66677777644434456899999999999876554 357999999885 44555543211 1 16899
Q ss_pred cCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCc
Q 002194 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (954)
Q Consensus 519 pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 572 (954)
|||+.|+|.... +....|+.++++++..+++....+
T Consensus 380 pdg~~l~~~~~~------------------~g~~~l~~~~~~g~~~~~l~~~~g 415 (427)
T PRK02889 380 PNGRYILYATQQ------------------GGRSVLAAVSSDGRIKQRLSVQGG 415 (427)
T ss_pred CCCCEEEEEEec------------------CCCEEEEEEECCCCceEEeecCCC
Confidence 999999998732 123469999997766667765443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-20 Score=208.77 Aligned_cols=221 Identities=17% Similarity=0.177 Sum_probs=159.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..||+++. +| ...+.|+. ....+..|.|||||++|+|++. +++..+||++|+++|+.++++.....
T Consensus 184 ~~i~i~d~--dg--~~~~~lt~--~~~~v~~p~wSPDG~~la~~s~------~~~~~~i~i~dl~tg~~~~l~~~~g~-- 249 (429)
T PRK01742 184 YEVRVADY--DG--FNQFIVNR--SSQPLMSPAWSPDGSKLAYVSF------ENKKSQLVVHDLRSGARKVVASFRGH-- 249 (429)
T ss_pred EEEEEECC--CC--CCceEecc--CCCccccceEcCCCCEEEEEEe------cCCCcEEEEEeCCCCceEEEecCCCc--
Confidence 48999997 44 44556654 2236899999999999999874 33567899999999988878755442
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
...++|||||+.|+++... + +..+||.+++
T Consensus 250 ---~~~~~wSPDG~~La~~~~~---------------------------------------~-------g~~~Iy~~d~~ 280 (429)
T PRK01742 250 ---NGAPAFSPDGSRLAFASSK---------------------------------------D-------GVLNIYVMGAN 280 (429)
T ss_pred ---cCceeECCCCCEEEEEEec---------------------------------------C-------CcEEEEEEECC
Confidence 3478999999999987210 0 3346999999
Q ss_pred CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
++..++++.. .....+.|||||++|+|.++... ..+||.++..++..+.+.. . +
T Consensus 281 ~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g----------~~~I~~~~~~~~~~~~l~~-~--------------~ 335 (429)
T PRK01742 281 GGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG----------SPQVYRMSASGGGASLVGG-R--------------G 335 (429)
T ss_pred CCCeEeeccCCCCcCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEecC-C--------------C
Confidence 7888888876 66788999999999999985432 1267777777666555421 1 1
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
..+.|||||+.|++. . .+.++++++ .+++.+.++.. .....++|||||+.|+|++.+++ .
T Consensus 336 -~~~~~SpDG~~ia~~-------------~-~~~i~~~Dl---~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~-~ 395 (429)
T PRK01742 336 -YSAQISADGKTLVMI-------------N-GDNVVKQDL---TSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGL-G 395 (429)
T ss_pred -CCccCCCCCCEEEEE-------------c-CCCEEEEEC---CCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCC-c
Confidence 246799999998886 1 135777886 56666666543 34577999999999999987654 2
Q ss_pred eEEEEEcCCCC
Q 002194 481 TRTWVISPGSK 491 (954)
Q Consensus 481 ~~l~~~d~~~~ 491 (954)
..++.++.++.
T Consensus 396 ~~l~~~~~~G~ 406 (429)
T PRK01742 396 KVLQLVSADGR 406 (429)
T ss_pred eEEEEEECCCC
Confidence 44666676663
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-22 Score=200.30 Aligned_cols=327 Identities=17% Similarity=0.195 Sum_probs=226.8
Q ss_pred cccccccCCCCCCCchhhhcccCCCCCcccccccceecccccccccccccccccccCCCCCCCccccccccccccccccc
Q 002194 13 HRGVSLLTPSSLSPPIFLCLKLGRVPGHLRTHSIKTTTAMTASRLHHLVPIHSVSSKNDGTNGSLSSSNAVATEDEDNLE 92 (954)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (954)
.|..+|.+|+.++||. .++|+.||+||+.+|.--+...|.+|+...+ .+...|+.|..
T Consensus 152 ~R~~ll~elskyi~p~---------------------illP~rRLehLl~qAv~~Q~d~cvyhnslds-vsll~Dh~c~~ 209 (519)
T KOG0293|consen 152 ERDKLLDELSKYIPPN---------------------ILLPKRRLEHLLEQAVKYQRDSCVYHNSLDS-VSLLSDHFCGR 209 (519)
T ss_pred hHHHHHHHHHhhCCHh---------------------hcCChHHHHHHHHHHHHHHHhHhHHhcccch-hhhhhhcccCc
Confidence 3888999999999999 8899999999999999999999998886654 57788998887
Q ss_pred CCcCCCChhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccC
Q 002194 93 GRYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP 172 (954)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 172 (954)
.+.+....++..-+.. +++.++||++|++||..+.+ ....+|.+..
T Consensus 210 ~qip~qt~qil~~htd-EVWfl~FS~nGkyLAsaSkD---------------------------------~Taiiw~v~~ 255 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTD-EVWFLQFSHNGKYLASASKD---------------------------------STAIIWIVVY 255 (519)
T ss_pred ccCCchhhhhHhhCCC-cEEEEEEcCCCeeEeeccCC---------------------------------ceEEEEEEec
Confidence 6666665555555544 89999999999999999886 3445666655
Q ss_pred CCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEe
Q 002194 173 DGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV 252 (954)
Q Consensus 173 ~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~ws 252 (954)
|+...-.+.+-++. ..+....||||.++|+-+.. ...++++|+++|+.+.......+. .+.+++|-
T Consensus 256 d~~~kl~~tlvgh~--~~V~yi~wSPDdryLlaCg~---------~e~~~lwDv~tgd~~~~y~~~~~~---S~~sc~W~ 321 (519)
T KOG0293|consen 256 DVHFKLKKTLVGHS--QPVSYIMWSPDDRYLLACGF---------DEVLSLWDVDTGDLRHLYPSGLGF---SVSSCAWC 321 (519)
T ss_pred Ccceeeeeeeeccc--CceEEEEECCCCCeEEecCc---------hHheeeccCCcchhhhhcccCcCC---CcceeEEc
Confidence 55322233333322 36899999999999998753 334999999999988776555211 25699999
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-
Q 002194 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP- 331 (954)
Q Consensus 253 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~- 331 (954)
|||..++..++ ..+++.++++|...---.+
T Consensus 322 pDg~~~V~Gs~-------------------------------------------------dr~i~~wdlDgn~~~~W~gv 352 (519)
T KOG0293|consen 322 PDGFRFVTGSP-------------------------------------------------DRTIIMWDLDGNILGNWEGV 352 (519)
T ss_pred cCCceeEecCC-------------------------------------------------CCcEEEecCCcchhhccccc
Confidence 99999886511 1347777887643111111
Q ss_pred --ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccC
Q 002194 332 --AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (954)
Q Consensus 332 --~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD 409 (954)
..+..++.++||++++.+..+ ..+.+++..+...+.+... . ..+.++..|-|
T Consensus 353 r~~~v~dlait~Dgk~vl~v~~d-------------~~i~l~~~e~~~dr~lise----~---------~~its~~iS~d 406 (519)
T KOG0293|consen 353 RDPKVHDLAITYDGKYVLLVTVD-------------KKIRLYNREARVDRGLISE----E---------QPITSFSISKD 406 (519)
T ss_pred ccceeEEEEEcCCCcEEEEEecc-------------cceeeechhhhhhhccccc----c---------CceeEEEEcCC
Confidence 346678999999999888733 2788888775543322221 1 23356778888
Q ss_pred CCCceEEEEec------------------------------cCCC--ccccccCCCeEEEEecCCCCCCCceEEeecccc
Q 002194 410 KPSTLYWAETQ------------------------------DGGD--AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLR 457 (954)
Q Consensus 410 g~~i~~~~~~~------------------------------~~~~--~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~ 457 (954)
|+.++.-...+ .|++ ....-++.++||+|+. ..|.....|+++...
T Consensus 407 ~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr--~sgkll~~LsGHs~~ 484 (519)
T KOG0293|consen 407 GKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR--ISGKLLAVLSGHSKT 484 (519)
T ss_pred CcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEc--cCCceeEeecCCcce
Confidence 87554322100 1111 1122345679999996 455556777888888
Q ss_pred cCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 458 YGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 458 ~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
++.++|+|.....+.++.+++. .+||-.+
T Consensus 485 vNcVswNP~~p~m~ASasDDgt-IRIWg~~ 513 (519)
T KOG0293|consen 485 VNCVSWNPADPEMFASASDDGT-IRIWGPS 513 (519)
T ss_pred eeEEecCCCCHHHhhccCCCCe-EEEecCC
Confidence 9999999988877666655543 6777544
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=206.39 Aligned_cols=255 Identities=15% Similarity=0.118 Sum_probs=183.9
Q ss_pred CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCC
Q 002194 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLG 278 (954)
Q Consensus 199 DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~ 278 (954)
-.++|+|++... ...++..+||++|.+|+..++++..... +..+.|||||+.|+|+...
T Consensus 161 f~~~ia~v~~~~--~~~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~wSpDG~~la~~s~~-------------- 219 (430)
T PRK00178 161 FSTRILYVTAER--FSVNTRYTLQRSDYDGARAVTLLQSREP-----ILSPRWSPDGKRIAYVSFE-------------- 219 (430)
T ss_pred ceeeEEEEEeeC--CCCCcceEEEEECCCCCCceEEecCCCc-----eeeeeECCCCCEEEEEEcC--------------
Confidence 346799987532 1123466899999999888888766543 5689999999999987210
Q ss_pred CceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcc
Q 002194 279 PKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYS 356 (954)
Q Consensus 279 ~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~ 356 (954)
+ +..+||++++ +|+.++++.. +....+.|||||++|+|+.....
T Consensus 220 -------------------------~-------~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g-- 265 (430)
T PRK00178 220 -------------------------Q-------KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG-- 265 (430)
T ss_pred -------------------------C-------CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC--
Confidence 0 2346999999 8888888765 55667999999999999874432
Q ss_pred cccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEE
Q 002194 357 FIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIY 436 (954)
Q Consensus 357 ~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~ 436 (954)
..+||++|+++++.++++..... ...+.|||||+.|+|..+. .+...||
T Consensus 266 --------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~~spDg~~i~f~s~~----------~g~~~iy 314 (430)
T PRK00178 266 --------NPEIYVMDLASRQLSRVTNHPAI-------------DTEPFWGKDGRTLYFTSDR----------GGKPQIY 314 (430)
T ss_pred --------CceEEEEECCCCCeEEcccCCCC-------------cCCeEECCCCCEEEEEECC----------CCCceEE
Confidence 23899999999888888764321 2357899999999987322 2234799
Q ss_pred EEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCee
Q 002194 437 TQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMR 516 (954)
Q Consensus 437 ~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 516 (954)
++++ .+++.++++........+.|||||+.|+|....++ ..+||++|++++ +.+.+++... + .. ++
T Consensus 315 ~~d~---~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~-~~~l~~~dl~tg--~~~~lt~~~~-~-----~~--p~ 380 (430)
T PRK00178 315 KVNV---NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDG-NFHVAAQDLQRG--SVRILTDTSL-D-----ES--PS 380 (430)
T ss_pred EEEC---CCCCEEEeecCCCCccceEECCCCCEEEEEEccCC-ceEEEEEECCCC--CEEEccCCCC-C-----CC--ce
Confidence 9986 66777777644434456899999999999876544 367999999885 4566654321 1 11 57
Q ss_pred eccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccC
Q 002194 517 RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 517 ~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
|||||++++|.... +....|++++++++..+++....
T Consensus 381 ~spdg~~i~~~~~~------------------~g~~~l~~~~~~g~~~~~l~~~~ 417 (430)
T PRK00178 381 VAPNGTMLIYATRQ------------------QGRGVLMLVSINGRVRLPLPTAQ 417 (430)
T ss_pred ECCCCCEEEEEEec------------------CCceEEEEEECCCCceEECcCCC
Confidence 99999999998732 12456999999887776776443
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-19 Score=187.11 Aligned_cols=219 Identities=18% Similarity=0.219 Sum_probs=146.4
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcc
Q 002194 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (954)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~ 730 (954)
.+..+.|.|.+. .+++.|+||++||.+... .. ....+..|+++||.|+++++ +|+|.+.
T Consensus 11 ~~~~~~~~p~~~---~~~~~p~vv~~HG~~~~~-----------~~----~~~~~~~l~~~G~~v~~~d~---~g~G~~~ 69 (249)
T PRK10566 11 GIEVLHAFPAGQ---RDTPLPTVFFYHGFTSSK-----------LV----YSYFAVALAQAGFRVIMPDA---PMHGARF 69 (249)
T ss_pred CcceEEEcCCCC---CCCCCCEEEEeCCCCccc-----------ch----HHHHHHHHHhCCCEEEEecC---CcccccC
Confidence 355677778641 123589999999963110 01 12457788899999999555 4554431
Q ss_pred cc------hh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEecc--CCCC---
Q 002194 731 AN------DR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG--AYNR--- 796 (954)
Q Consensus 731 ~~------~~---~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~--~~~~--- 796 (954)
.. .. ......+|+.++++++.+++.+|+++|+++|||+||++++.++.++|+ +++++.+.+ .+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~ 148 (249)
T PRK10566 70 SGDEARRLNHFWQILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPW-VKCVASLMGSGYFTSLAR 148 (249)
T ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCC-eeEEEEeeCcHHHHHHHH
Confidence 11 11 112446788889999999888999999999999999999999999876 444443322 1110
Q ss_pred -CCCCCCCccc--cchhhhcHHHHHhcCcccccCCC-CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCC--cEEEEEe
Q 002194 797 -TLTPFGFQNE--DRTLWEATSTYVEMSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA--LCRLVIL 870 (954)
Q Consensus 797 -~~~~~~~~~~--~~~~~~~~~~~~~~sp~~~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~--~~~~~~~ 870 (954)
...+...... .....+....+..+++...+.++ ++|+|++||++|.+|| +.++++++++++..|. +++++.|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~--~~~~~~l~~~l~~~g~~~~~~~~~~ 226 (249)
T PRK10566 149 TLFPPLIPETAAQQAEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVP--AAESLRLQQALRERGLDKNLTCLWE 226 (249)
T ss_pred HhcccccccccccHHHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCC--HHHHHHHHHHHHhcCCCcceEEEec
Confidence 0000000000 00111111223344555566666 6899999999999999 9999999999999886 4789999
Q ss_pred CCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 871 PFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 871 ~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
++++|.+. ...++.+.+||+++|
T Consensus 227 ~~~~H~~~-----~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 227 PGVRHRIT-----PEALDAGVAFFRQHL 249 (249)
T ss_pred CCCCCccC-----HHHHHHHHHHHHhhC
Confidence 99999974 356789999999875
|
|
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-19 Score=177.85 Aligned_cols=232 Identities=14% Similarity=0.158 Sum_probs=169.6
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEc
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (954)
...-.+++.+|.++....++|..- ..+..+|+++||.... .. ......+..|+..||.|++
T Consensus 27 ~~~~~~~n~rG~~lft~~W~p~~~----~~pr~lv~~~HG~g~~------------~s--~~~~~~a~~l~~~g~~v~a- 87 (313)
T KOG1455|consen 27 YSESFFTNPRGAKLFTQSWLPLSG----TEPRGLVFLCHGYGEH------------SS--WRYQSTAKRLAKSGFAVYA- 87 (313)
T ss_pred eeeeeEEcCCCCEeEEEecccCCC----CCCceEEEEEcCCccc------------ch--hhHHHHHHHHHhCCCeEEE-
Confidence 344456788999999999999642 2357889999995211 00 1122467789999999999
Q ss_pred CCCCCCCCCCcccchhh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 719 PTTPIIGEGDEEANDRF---VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 719 ~~~~~~G~G~~~~~~~~---~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
+|..|+|.+.+...+ +...++|+...++.+..+..-...+.+++||||||.+++.++.++|+.+.++|.++|++-
T Consensus 88 --~D~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~ 165 (313)
T KOG1455|consen 88 --IDYEGHGRSDGLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCK 165 (313)
T ss_pred --eeccCCCcCCCCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccc
Confidence 777899988764433 567899999999998887655556899999999999999999999999999999998653
Q ss_pred CCC-------------------CCCCCcc-c------cchhhhcHHHHHhcC----------------------cccccC
Q 002194 796 RTL-------------------TPFGFQN-E------DRTLWEATSTYVEMS----------------------PFMSAN 827 (954)
Q Consensus 796 ~~~-------------------~~~~~~~-~------~~~~~~~~~~~~~~s----------------------p~~~~~ 827 (954)
... -.|.... . .+.++. ......+ ...++.
T Consensus 166 i~~~~kp~p~v~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~--r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~ 243 (313)
T KOG1455|consen 166 ISEDTKPHPPVISILTLLSKLIPTWKIVPTKDIIDVAFKDPEK--RKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLN 243 (313)
T ss_pred cCCccCCCcHHHHHHHHHHHhCCceeecCCccccccccCCHHH--HHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcc
Confidence 110 0011000 0 011111 1111112 234567
Q ss_pred CCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC---CcccHHHHHHHHHHHHHHh
Q 002194 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA---ARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 828 ~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~---~~~~~~~~~~~i~~fl~~~ 897 (954)
++..|+||+||+.|.++. +.-++++|+...... +++.+|||+-|.+. ..++.+.++..|++||+++
T Consensus 244 ~vtvPflilHG~dD~VTD--p~~Sk~Lye~A~S~D--KTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 244 EVTVPFLILHGTDDKVTD--PKVSKELYEKASSSD--KTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cccccEEEEecCCCcccC--cHHHHHHHHhccCCC--CceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 788999999999999988 899999999887765 57778999999986 4567888999999999875
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=191.98 Aligned_cols=244 Identities=16% Similarity=0.188 Sum_probs=167.1
Q ss_pred CcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC
Q 002194 633 QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG 712 (954)
Q Consensus 633 ~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G 712 (954)
....++.+...+++.||.+|++..+.|.+. ..+.++||++||.... ..| .....+..|+++|
T Consensus 26 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~----~~~~~~VvllHG~~~~------------~~~--~~~~~~~~L~~~G 87 (330)
T PLN02298 26 ALKGIKGSKSFFTSPRGLSLFTRSWLPSSS----SPPRALIFMVHGYGND------------ISW--TFQSTAIFLAQMG 87 (330)
T ss_pred hccCCccccceEEcCCCCEEEEEEEecCCC----CCCceEEEEEcCCCCC------------cce--ehhHHHHHHHhCC
Confidence 344456667778888999999999988641 1246899999996310 001 0123455688899
Q ss_pred cEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEE
Q 002194 713 FAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (954)
|.|++ +|.+|+|.+.... .......+|+.+++++|......+..+++|+||||||.+++.++.++|++++++|+
T Consensus 88 y~V~~---~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl 164 (330)
T PLN02298 88 FACFA---LDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVL 164 (330)
T ss_pred CEEEE---ecCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEE
Confidence 99999 6777888875322 23566789999999999876444556899999999999999999999999999999
Q ss_pred eccCCCCCCC---CCC-----------Ccc----ccchhh------hcHHHHHhcCc----------------------c
Q 002194 790 RSGAYNRTLT---PFG-----------FQN----EDRTLW------EATSTYVEMSP----------------------F 823 (954)
Q Consensus 790 ~~~~~~~~~~---~~~-----------~~~----~~~~~~------~~~~~~~~~sp----------------------~ 823 (954)
++|....... .+. ... ...... .....+...+| .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
T PLN02298 165 VAPMCKISDKIRPPWPIPQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLG 244 (330)
T ss_pred ecccccCCcccCCchHHHHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHH
Confidence 9886432110 000 000 000000 00000111111 1
Q ss_pred cccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcc---cHHHHHHHHHHHHHHhccc
Q 002194 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE---SIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 824 ~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~---~~~~~~~~i~~fl~~~l~~ 900 (954)
..+.++++|+||+||++|.+|| ++.++++++++... .++++++++++|.+...+ ..+.+.+.+.+||++++..
T Consensus 245 ~~l~~i~~PvLii~G~~D~ivp--~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~ 320 (330)
T PLN02298 245 KKLKDVSIPFIVLHGSADVVTD--PDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCTG 320 (330)
T ss_pred HhhhhcCCCEEEEecCCCCCCC--HHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhccC
Confidence 2346788999999999999999 99999999887643 368889999999975321 2356788899999999754
Q ss_pred C
Q 002194 901 N 901 (954)
Q Consensus 901 ~ 901 (954)
.
T Consensus 321 ~ 321 (330)
T PLN02298 321 K 321 (330)
T ss_pred C
Confidence 4
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-19 Score=184.47 Aligned_cols=206 Identities=12% Similarity=0.050 Sum_probs=144.5
Q ss_pred EEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC
Q 002194 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (954)
Q Consensus 643 ~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (954)
.+.+.+|.+|.||+..|++.. ..+.++||++||.... ......++..|+++||+|+. +|
T Consensus 13 ~~~~~dG~~L~Gwl~~P~~~~---~~~~~~vIi~HGf~~~---------------~~~~~~~A~~La~~G~~vLr---fD 71 (307)
T PRK13604 13 VICLENGQSIRVWETLPKENS---PKKNNTILIASGFARR---------------MDHFAGLAEYLSSNGFHVIR---YD 71 (307)
T ss_pred eEEcCCCCEEEEEEEcCcccC---CCCCCEEEEeCCCCCC---------------hHHHHHHHHHHHHCCCEEEE---ec
Confidence 456789999999999997522 2347899999995210 01134578889999999999 66
Q ss_pred CCCC-CCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC-
Q 002194 723 IIGE-GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL- 798 (954)
Q Consensus 723 ~~G~-G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~- 798 (954)
.+|. |.|.+.- ........|+.++++|++++. .++|+|+||||||.+++.+|+.. .++++|+.+|+.+...
T Consensus 72 ~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~l~d~ 146 (307)
T PRK13604 72 SLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVNLRDT 146 (307)
T ss_pred CCCCCCCCCCccccCcccccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCcccHHHH
Confidence 5554 5553321 112345799999999998863 46899999999999987766644 3999999999887220
Q ss_pred ------C-----CCCCccc-----c-----chhhhcH---HHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHH
Q 002194 799 ------T-----PFGFQNE-----D-----RTLWEAT---STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (954)
Q Consensus 799 ------~-----~~~~~~~-----~-----~~~~~~~---~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~ 854 (954)
. ++..... . ..+.... ......+|+..+++++.|+|+|||++|..|| +++++++
T Consensus 147 l~~~~~~~~~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp--~~~s~~l 224 (307)
T PRK13604 147 LERALGYDYLSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVK--QSEVIDL 224 (307)
T ss_pred HHHhhhcccccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccC--HHHHHHH
Confidence 0 0000000 0 0011110 0011235567788899999999999999999 9999999
Q ss_pred HHHHHhCCCcEEEEEeCCCCCcCC
Q 002194 855 FNALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 855 ~~~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
+++++. .+++++++||++|.+.
T Consensus 225 ~e~~~s--~~kkl~~i~Ga~H~l~ 246 (307)
T PRK13604 225 LDSIRS--EQCKLYSLIGSSHDLG 246 (307)
T ss_pred HHHhcc--CCcEEEEeCCCccccC
Confidence 998764 3579999999999985
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-19 Score=198.75 Aligned_cols=221 Identities=17% Similarity=0.194 Sum_probs=160.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
....++|||||++|||++.+ . .. ..||+|++.+ ++.+.++.++ .
T Consensus 205 ~v~~p~wSPDG~~la~~s~~----------------------~--~~------~~i~i~dl~t----g~~~~l~~~~--g 248 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFE----------------------N--KK------SQLVVHDLRS----GARKVVASFR--G 248 (429)
T ss_pred ccccceEcCCCCEEEEEEec----------------------C--CC------cEEEEEeCCC----CceEEEecCC--C
Confidence 46789999999999998763 1 01 3799999854 5556665443 2
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
....++|||||++|+|+.. .++..+||++|+++++.+++|..... ...+.|+|||+.|+|+...
T Consensus 249 ~~~~~~wSPDG~~La~~~~------~~g~~~Iy~~d~~~~~~~~lt~~~~~-----~~~~~wSpDG~~i~f~s~~----- 312 (429)
T PRK01742 249 HNGAPAFSPDGSRLAFASS------KDGVLNIYVMGANGGTPSQLTSGAGN-----NTEPSWSPDGQSILFTSDR----- 312 (429)
T ss_pred ccCceeECCCCCEEEEEEe------cCCcEEEEEEECCCCCeEeeccCCCC-----cCCEEECCCCCEEEEEECC-----
Confidence 3567999999999999763 34567899999999999999865442 5589999999999987210
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCccccccccCCCCcEEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (954)
+ +..+||.++. ++..++++... ..+.|||||++|++
T Consensus 313 ----------------------------------~-------g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~ 349 (429)
T PRK01742 313 ----------------------------------S-------GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVM 349 (429)
T ss_pred ----------------------------------C-------CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEE
Confidence 0 3347999998 55566663323 46889999999999
Q ss_pred EeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (954)
.+.. .+++||+.++..+.++... . ...++|+|||+.|+|... +
T Consensus 350 ~~~~--------------~i~~~Dl~~g~~~~lt~~~-~-------------~~~~~~sPdG~~i~~~s~--~------- 392 (429)
T PRK01742 350 INGD--------------NVVKQDLTSGSTEVLSSTF-L-------------DESPSISPNGIMIIYSST--Q------- 392 (429)
T ss_pred EcCC--------------CEEEEECCCCCeEEecCCC-C-------------CCCceECCCCCEEEEEEc--C-------
Confidence 8731 6788999877766665321 1 135789999999888732 1
Q ss_pred ccCCCeEEEEecCCCCCCCceEEeecccccCceeeccC
Q 002194 429 VTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466 (954)
Q Consensus 429 ~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spD 466 (954)
.....++++++ +|...+.|..+++.+..++|||-
T Consensus 393 -g~~~~l~~~~~---~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 393 -GLGKVLQLVSA---DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred -CCceEEEEEEC---CCCceEEccCCCCCCCCcccCCC
Confidence 12335666664 77777888777777889999984
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=184.84 Aligned_cols=233 Identities=19% Similarity=0.170 Sum_probs=154.0
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcE
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (954)
.......++|.+.+|..|.|++++|++ +++++|+||.+||.... .........|+.+||+
T Consensus 52 ~~~~vy~v~f~s~~g~~V~g~l~~P~~----~~~~~Pavv~~hGyg~~----------------~~~~~~~~~~a~~G~~ 111 (320)
T PF05448_consen 52 PGVEVYDVSFESFDGSRVYGWLYRPKN----AKGKLPAVVQFHGYGGR----------------SGDPFDLLPWAAAGYA 111 (320)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEES-----SSSSEEEEEEE--TT------------------GGGHHHHHHHHHTT-E
T ss_pred CCEEEEEEEEEccCCCEEEEEEEecCC----CCCCcCEEEEecCCCCC----------------CCCcccccccccCCeE
Confidence 345678899999999999999999984 23569999999995311 0111234468999999
Q ss_pred EEEcCCCCCCCCC------------------Ccc-cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH
Q 002194 715 ILGGPTTPIIGEG------------------DEE-ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (954)
Q Consensus 715 V~~~~~~~~~G~G------------------~~~-~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 775 (954)
|+..+.+|..|.. ... ....++...+.|+..++++|.+++.+|++||+++|.|+||.+++.
T Consensus 112 vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~ 191 (320)
T PF05448_consen 112 VLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALA 191 (320)
T ss_dssp EEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHH
T ss_pred EEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHH
Confidence 9996655544211 111 123345667899999999999999999999999999999999999
Q ss_pred HHHhCCCcccEEEEeccCCCC-C----CCC--CCCccccch-------hhh---cHHHHHhcCcccccCCCCCCEEEEEe
Q 002194 776 LLAHAPHLFCCGIARSGAYNR-T----LTP--FGFQNEDRT-------LWE---ATSTYVEMSPFMSANKLKKPILLVHG 838 (954)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~-~----~~~--~~~~~~~~~-------~~~---~~~~~~~~sp~~~~~~~~~P~Lii~G 838 (954)
+++.+ ++++++++..|++.. . ... ..+...... .-. -.+.+..++..+.+.+|++|+|+..|
T Consensus 192 ~aaLd-~rv~~~~~~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~g 270 (320)
T PF05448_consen 192 AAALD-PRVKAAAADVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVG 270 (320)
T ss_dssp HHHHS-ST-SEEEEESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEE
T ss_pred HHHhC-ccccEEEecCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEe
Confidence 99999 569999999886431 0 000 000000000 001 12334456777888999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
-.|.+|| +......|+++.. ++++.+||..+|.... ....++.++||.+|
T Consensus 271 l~D~~cP--P~t~fA~yN~i~~---~K~l~vyp~~~He~~~----~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 271 LQDPVCP--PSTQFAAYNAIPG---PKELVVYPEYGHEYGP----EFQEDKQLNFLKEH 320 (320)
T ss_dssp TT-SSS---HHHHHHHHCC--S---SEEEEEETT--SSTTH----HHHHHHHHHHHHH-
T ss_pred cCCCCCC--chhHHHHHhccCC---CeeEEeccCcCCCchh----hHHHHHHHHHHhcC
Confidence 9999999 8888888888754 4899999999998741 23357788999875
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-18 Score=182.08 Aligned_cols=238 Identities=16% Similarity=0.189 Sum_probs=151.1
Q ss_pred ceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHH-HHCCcEE
Q 002194 638 QKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW-LARGFAI 715 (954)
Q Consensus 638 ~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~G~~V 715 (954)
+.+.+++.+. -+.++.+.+|+|+++... +.|+|+++||.+... ..|.. ......+ ++.||.|
T Consensus 12 ~~~~~~~~s~~~~~~~~~~v~~P~~~~~~---~~P~vvllHG~~~~~-----------~~~~~--~~~~~~la~~~g~~V 75 (275)
T TIGR02821 12 TQGFYRHKSETCGVPMTFGVFLPPQAAAG---PVPVLWYLSGLTCTH-----------ENFMI--KAGAQRFAAEHGLAL 75 (275)
T ss_pred EEEEEEEeccccCCceEEEEEcCCCccCC---CCCEEEEccCCCCCc-----------cHHHh--hhHHHHHHhhcCcEE
Confidence 3455666554 567889999999875432 489999999964211 11110 0112334 4579999
Q ss_pred EEcCCCCCCCCCC-------------ccc----chhh--HHHHHHHHHHHHHH-HHHcCCCCCCcEEEEeeChHHHHHHH
Q 002194 716 LGGPTTPIIGEGD-------------EEA----NDRF--VEQLVACAEAAVEE-VVRRGVAHPSKIAVGGHSYGAFMTAN 775 (954)
Q Consensus 716 ~~~~~~~~~G~G~-------------~~~----~~~~--~~~~~~D~~~av~~-l~~~~~~d~~ri~l~G~S~GG~~a~~ 775 (954)
++++.. ..|.|. ++. ...+ .......+.+.+.. +.+...+|+++++++|+||||++|+.
T Consensus 76 v~Pd~~-~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~ 154 (275)
T TIGR02821 76 VAPDTS-PRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALV 154 (275)
T ss_pred EEeCCC-CCcCCCCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHH
Confidence 997652 122221 100 0000 00112222222333 33334478899999999999999999
Q ss_pred HHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCC--CCCCEEEEEeCCCCCCCCch-HHHH
Q 002194 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK--LKKPILLVHGEEDNNSGTLT-MQSD 852 (954)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--~~~P~Lii~G~~D~~v~~~~-~~~~ 852 (954)
++.++|+.|+++++++|+++.....+.............+.+...+|...+.+ ...|+|++||+.|..++ . .++.
T Consensus 155 ~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~--~~~~~~ 232 (275)
T TIGR02821 155 IALKNPDRFKSVSAFAPIVAPSRCPWGQKAFSAYLGADEAAWRSYDASLLVADGGRHSTILIDQGTADQFLD--EQLRPD 232 (275)
T ss_pred HHHhCcccceEEEEECCccCcccCcchHHHHHHHhcccccchhhcchHHHHhhcccCCCeeEeecCCCcccC--ccccHH
Confidence 99999999999999999977543222100001111112222334455544433 45799999999999998 7 5788
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 853 RFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
.+.++|+..|+++++.++|+++|.|... ...+.+.++|+.++
T Consensus 233 ~~~~~l~~~g~~v~~~~~~g~~H~f~~~---~~~~~~~~~~~~~~ 274 (275)
T TIGR02821 233 AFEQACRAAGQALTLRRQAGYDHSYYFI---ASFIADHLRHHAER 274 (275)
T ss_pred HHHHHHHHcCCCeEEEEeCCCCccchhH---HHhHHHHHHHHHhh
Confidence 9999999999999999999999998533 45566777887765
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-18 Score=190.03 Aligned_cols=230 Identities=17% Similarity=0.136 Sum_probs=153.9
Q ss_pred CCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEE
Q 002194 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (954)
Q Consensus 636 ~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (954)
....+.++++..+|..|++++++|+. .++.|+||++||.. +.. ..........|+++||+|
T Consensus 165 ~~~~e~v~i~~~~g~~l~g~l~~P~~-----~~~~P~Vli~gG~~------------~~~--~~~~~~~~~~La~~Gy~v 225 (414)
T PRK05077 165 PGELKELEFPIPGGGPITGFLHLPKG-----DGPFPTVLVCGGLD------------SLQ--TDYYRLFRDYLAPRGIAM 225 (414)
T ss_pred CCceEEEEEEcCCCcEEEEEEEECCC-----CCCccEEEEeCCcc------------cch--hhhHHHHHHHHHhCCCEE
Confidence 34578999998888899999999973 23589988776631 000 001123466788999999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
++ ++..|+|.+.... ..........+++++|.+.+.+|++||+++|+|+||++++.++...|++++++|+++|+++
T Consensus 226 l~---~D~pG~G~s~~~~-~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~ 301 (414)
T PRK05077 226 LT---IDMPSVGFSSKWK-LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVH 301 (414)
T ss_pred EE---ECCCCCCCCCCCC-ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccc
Confidence 99 5556777663321 0011122235788999999889999999999999999999999999889999999998765
Q ss_pred CCCCCCCCccc------------cchhhhcHH----HHHhcCcc--c-ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHH
Q 002194 796 RTLTPFGFQNE------------DRTLWEATS----TYVEMSPF--M-SANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (954)
Q Consensus 796 ~~~~~~~~~~~------------~~~~~~~~~----~~~~~sp~--~-~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (954)
........... ........+ .+..++.. . ...++++|+|++||++|.+|| +++++.+.+
T Consensus 302 ~~~~~~~~~~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP--~~~a~~l~~ 379 (414)
T PRK05077 302 TLLTDPKRQQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSP--EEDSRLIAS 379 (414)
T ss_pred hhhcchhhhhhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCC--HHHHHHHHH
Confidence 22111000000 000000111 11111211 1 125688999999999999999 888886655
Q ss_pred HHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 857 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
... +.+++++|+. |.+ +....++..+.+||.++|
T Consensus 380 ~~~----~~~l~~i~~~-~~~---e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 380 SSA----DGKLLEIPFK-PVY---RNFDKALQEISDWLEDRL 413 (414)
T ss_pred hCC----CCeEEEccCC-Ccc---CCHHHHHHHHHHHHHHHh
Confidence 442 3588889986 433 356788999999999876
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.9e-18 Score=180.58 Aligned_cols=240 Identities=21% Similarity=0.225 Sum_probs=150.6
Q ss_pred CceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEE
Q 002194 637 LQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (954)
Q Consensus 637 ~~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (954)
...+.+++.+. -|.+++..+|+|+. .++ .++|+|+++||+.... ..|... ......++..||+|
T Consensus 16 ~~~~~~~~~s~~l~~~~~~~vy~P~~-~~~--~~~Pvv~~lHG~~~~~-----------~~~~~~-~~~~~~~~~~g~~V 80 (283)
T PLN02442 16 GFNRRYKHFSSTLGCSMTFSVYFPPA-SDS--GKVPVLYWLSGLTCTD-----------ENFIQK-SGAQRAAAARGIAL 80 (283)
T ss_pred CEEEEEEEeccccCCceEEEEEcCCc-ccC--CCCCEEEEecCCCcCh-----------HHHHHh-hhHHHHHhhcCeEE
Confidence 34566666653 57789999999984 222 3599999999964211 111100 11234556789999
Q ss_pred EEcCCCCC--C----------CCCCccc----c-----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHH
Q 002194 716 LGGPTTPI--I----------GEGDEEA----N-----DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA 774 (954)
Q Consensus 716 ~~~~~~~~--~----------G~G~~~~----~-----~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~ 774 (954)
+.++.... . ++|.+.. . ..+.....+++...++... ..+|+++++|+|+||||++|+
T Consensus 81 v~pd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~~i~G~S~GG~~a~ 158 (283)
T PLN02442 81 VAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNF--DQLDTSRASIFGHSMGGHGAL 158 (283)
T ss_pred EecCCCCCCCCCCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHH--HhcCCCceEEEEEChhHHHHH
Confidence 99764211 1 1111110 0 0122233444444443332 236889999999999999999
Q ss_pred HHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcC---cccccCCCCCCEEEEEeCCCCCCCCchH-H
Q 002194 775 NLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMS---PFMSANKLKKPILLVHGEEDNNSGTLTM-Q 850 (954)
Q Consensus 775 ~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---p~~~~~~~~~P~Lii~G~~D~~v~~~~~-~ 850 (954)
.++.++|++|+++++++|+++.....+.............+.+.+++ ++.++.+.++|+|++||++|.+|+ .. +
T Consensus 159 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~--~~~~ 236 (283)
T PLN02442 159 TIYLKNPDKYKSVSAFAPIANPINCPWGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLK--EQLL 236 (283)
T ss_pred HHHHhCchhEEEEEEECCccCcccCchhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCcccc--cccc
Confidence 99999999999999999988754222211100111111122233444 444555678999999999999987 53 5
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 851 SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
++.++++++..|.++++.++|+++|.+. ....++++.+.|..+++
T Consensus 237 s~~~~~~l~~~g~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~ 281 (283)
T PLN02442 237 PENFEEACKEAGAPVTLRLQPGYDHSYF---FIATFIDDHINHHAQAL 281 (283)
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999874 22233344445544443
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=177.92 Aligned_cols=201 Identities=22% Similarity=0.239 Sum_probs=142.3
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCC--CCCc
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG--EGDE 729 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G--~G~~ 729 (954)
+.+++..|++ .++.|.||++|+.. ++.......+..|+++||.|+.++.++..+ ....
T Consensus 1 ~~ay~~~P~~-----~~~~~~Vvv~~d~~---------------G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~ 60 (218)
T PF01738_consen 1 IDAYVARPEG-----GGPRPAVVVIHDIF---------------GLNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDP 60 (218)
T ss_dssp EEEEEEEETT-----SSSEEEEEEE-BTT---------------BS-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCH
T ss_pred CeEEEEeCCC-----CCCCCEEEEEcCCC---------------CCchHHHHHHHHHHhcCCCEEecccccCCCCCccch
Confidence 5789999976 14589999999841 122222346788999999999988876655 1111
Q ss_pred ccc-hh-------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCC
Q 002194 730 EAN-DR-------FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF 801 (954)
Q Consensus 730 ~~~-~~-------~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~ 801 (954)
... .. .......|+.+++++|.+++.++.+||+++|+|+||.+++.++.+. +.++|+|+..|...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~------ 133 (218)
T PF01738_consen 61 EEAFAAMRELFAPRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP------ 133 (218)
T ss_dssp HCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS------
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC------
Confidence 111 11 1235578889999999999888999999999999999999998887 67999999888100
Q ss_pred CCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcc
Q 002194 802 GFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (954)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (954)
...+.....++++|+|+++|++|..++ .+...++.++|+..++++++++|||++|+|....
T Consensus 134 -----------------~~~~~~~~~~~~~P~l~~~g~~D~~~~--~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 134 -----------------PPPPLEDAPKIKAPVLILFGENDPFFP--PEEVEALEEALKAAGVDVEVHVYPGAGHGFANPS 194 (218)
T ss_dssp -----------------GGGHHHHGGG--S-EEEEEETT-TTS---HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTT
T ss_pred -----------------CCcchhhhcccCCCEeecCccCCCCCC--hHHHHHHHHHHHhcCCcEEEEECCCCcccccCCC
Confidence 011223345678999999999999998 8888999999999999999999999999996432
Q ss_pred -------cHHHHHHHHHHHHHHhc
Q 002194 882 -------SIMHVLWETDRWLQKYC 898 (954)
Q Consensus 882 -------~~~~~~~~i~~fl~~~l 898 (954)
..++.++++++||++||
T Consensus 195 ~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 195 RPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp STT--HHHHHHHHHHHHHHHCC--
T ss_pred CcccCHHHHHHHHHHHHHHHHhcC
Confidence 34678889999999876
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-17 Score=187.95 Aligned_cols=228 Identities=19% Similarity=0.220 Sum_probs=165.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..||+++. +| ...++|+.. +..+..|.|||||++|+|+.. .++..+||++++++|+.+.++.....
T Consensus 170 ~~l~~~d~--~g--~~~~~l~~~--~~~~~~p~~Spdg~~la~~~~------~~~~~~i~v~d~~~g~~~~~~~~~~~-- 235 (417)
T TIGR02800 170 YELQVADY--DG--ANPQTITRS--REPILSPAWSPDGQKLAYVSF------ESGKPEIYVQDLATGQREKVASFPGM-- 235 (417)
T ss_pred ceEEEEcC--CC--CCCEEeecC--CCceecccCCCCCCEEEEEEc------CCCCcEEEEEECCCCCEEEeecCCCC--
Confidence 37899887 33 556777642 235788999999999999864 23457899999999888777654432
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
...+.|+|||+.|+++... + +..+||.+++
T Consensus 236 ---~~~~~~spDg~~l~~~~~~---------------------------------------~-------~~~~i~~~d~~ 266 (417)
T TIGR02800 236 ---NGAPAFSPDGSKLAVSLSK---------------------------------------D-------GNPDIYVMDLD 266 (417)
T ss_pred ---ccceEECCCCCEEEEEECC---------------------------------------C-------CCccEEEEECC
Confidence 4478999999999886110 0 2346999999
Q ss_pred CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
++..++++.. .....+.|+|||++|+|.+.+.. ..+||++++++++.++++... ..
T Consensus 267 ~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----------~~~iy~~d~~~~~~~~l~~~~-------------~~ 323 (417)
T TIGR02800 267 GKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----------SPQIYMMDADGGEVRRLTFRG-------------GY 323 (417)
T ss_pred CCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCC-------------CC
Confidence 7888888766 45568899999999999885432 127999999887777766432 12
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
...+.|||||+.|+|.... .....|+++++ .++..+.++... ....+.|+|||+.|+|....++.
T Consensus 324 ~~~~~~spdg~~i~~~~~~----------~~~~~i~~~d~---~~~~~~~l~~~~-~~~~p~~spdg~~l~~~~~~~~~- 388 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHRE----------GGGFNIAVMDL---DGGGERVLTDTG-LDESPSFAPNGRMILYATTRGGR- 388 (417)
T ss_pred ccCeEECCCCCEEEEEEcc----------CCceEEEEEeC---CCCCeEEccCCC-CCCCceECCCCCEEEEEEeCCCc-
Confidence 2467899999988887221 12447899996 556666665433 35678999999999999887653
Q ss_pred eEEEEEcCCCC
Q 002194 481 TRTWVISPGSK 491 (954)
Q Consensus 481 ~~l~~~d~~~~ 491 (954)
..|++++.++.
T Consensus 389 ~~l~~~~~~g~ 399 (417)
T TIGR02800 389 GVLGLVSTDGR 399 (417)
T ss_pred EEEEEEECCCc
Confidence 67888887763
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=184.84 Aligned_cols=234 Identities=15% Similarity=0.134 Sum_probs=158.9
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (954)
++..+.+.+|.++.+..+.|++ ..+.|+||++||..... . .+....+..|+++||.|++
T Consensus 62 ~~~~~~~~~g~~l~~~~~~p~~-----~~~~~~iv~lHG~~~~~------------~--~~~~~~~~~l~~~g~~v~~-- 120 (349)
T PLN02385 62 EESYEVNSRGVEIFSKSWLPEN-----SRPKAAVCFCHGYGDTC------------T--FFFEGIARKIASSGYGVFA-- 120 (349)
T ss_pred eeeeEEcCCCCEEEEEEEecCC-----CCCCeEEEEECCCCCcc------------c--hHHHHHHHHHHhCCCEEEE--
Confidence 3444556799999999999863 12468999999953110 0 0012345677889999999
Q ss_pred CCCCCCCCCcccchh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC
Q 002194 720 TTPIIGEGDEEANDR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (954)
Q Consensus 720 ~~~~~G~G~~~~~~~---~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (954)
.+.+|+|.+..... .+...++|+.+.++.+..+...+..+++|+||||||.+++.++.++|++++++|+++|+...
T Consensus 121 -~D~~G~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~ 199 (349)
T PLN02385 121 -MDYPGFGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKI 199 (349)
T ss_pred -ecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccc
Confidence 66778888764321 34667889998888887654455668999999999999999999999999999999886431
Q ss_pred CC--CC-----------------CC-Ccc-c-cchhhhcH-----------------------HHHHh-cCcccccCCCC
Q 002194 797 TL--TP-----------------FG-FQN-E-DRTLWEAT-----------------------STYVE-MSPFMSANKLK 830 (954)
Q Consensus 797 ~~--~~-----------------~~-~~~-~-~~~~~~~~-----------------------~~~~~-~sp~~~~~~~~ 830 (954)
.. .+ .. +.. . ....+... +.+.. ......+.+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~ 279 (349)
T PLN02385 200 ADDVVPPPLVLQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVS 279 (349)
T ss_pred cccccCchHHHHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCC
Confidence 10 00 00 000 0 00000000 00000 01123456789
Q ss_pred CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCccc---HHHHHHHHHHHHHHhcc
Q 002194 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES---IMHVLWETDRWLQKYCV 899 (954)
Q Consensus 831 ~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~---~~~~~~~i~~fl~~~l~ 899 (954)
+|+||+||++|.++| +..++++++.+... ++++++||+++|.+...+. ...++..|.+||++++.
T Consensus 280 ~P~Lii~G~~D~vv~--~~~~~~l~~~~~~~--~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 280 LPLLILHGEADKVTD--PSVSKFLYEKASSS--DKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred CCEEEEEeCCCCccC--hHHHHHHHHHcCCC--CceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 999999999999998 89999998877543 3588899999999753222 34588899999999863
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=184.66 Aligned_cols=323 Identities=18% Similarity=0.213 Sum_probs=199.4
Q ss_pred cCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcccceee
Q 002194 117 SPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTW 196 (954)
Q Consensus 117 SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~w 196 (954)
||||++++|..+. . ...|-++...+||+++++ ++.++|+.. ......+.|
T Consensus 1 S~d~~~~l~~~~~----------------------~--~~~r~s~~~~y~i~d~~~----~~~~~l~~~--~~~~~~~~~ 50 (353)
T PF00930_consen 1 SPDGKFVLFATNY----------------------T--KQWRHSFKGDYYIYDIET----GEITPLTPP--PPKLQDAKW 50 (353)
T ss_dssp -TTSSEEEEEEEE----------------------E--EESSSEEEEEEEEEETTT----TEEEESS-E--ETTBSEEEE
T ss_pred CCCCCeEEEEECc----------------------E--EeeeeccceeEEEEecCC----CceEECcCC--cccccccee
Confidence 8999999997762 1 112234457899999965 666666532 247899999
Q ss_pred cCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc-cc------------cccceeEecCCeEEEEEec
Q 002194 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-NA------------IFDNFVWVNNSTLLVCTIP 263 (954)
Q Consensus 197 SPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~-~~------------~~~~~~wspDG~~l~~~~~ 263 (954)
||||++|+|+. +.+||+.+..+++.++||..+...+ ++ ....+.|||||+.|+|..-
T Consensus 51 sP~g~~~~~v~----------~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 51 SPDGKYIAFVR----------DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp -SSSTEEEEEE----------TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ecCCCeeEEEe----------cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 99999999987 5699999999999999998763221 11 1236779999999999955
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCC------C-cccc
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP------P-AVYT 335 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~------~-~~~~ 335 (954)
+.+....... .........++ ....+.++.-+.. .....|+++++ +|+...+.. . ..+.
T Consensus 121 d~~~v~~~~~-------~~~~~~~~~yp---~~~~~~YPk~G~~---np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~ 187 (353)
T PF00930_consen 121 DEREVPEYPL-------PDYSPPDSQYP---EVESIRYPKAGDP---NPRVSLFVVDLASGKTTELDPPNSLNPQDYYLT 187 (353)
T ss_dssp E-TTS-EEEE-------EEESSSTESS----EEEEEE--BTTS------EEEEEEEESSSTCCCEE---HHHHTSSEEEE
T ss_pred CCcCCceEEe-------eccCCccccCC---cccccccCCCCCc---CCceEEEEEECCCCcEEEeeeccccCCCccCcc
Confidence 4443310000 00000000000 0000111111100 03456999999 776544432 1 4557
Q ss_pred ccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeec-cCCCCce
Q 002194 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR-SDKPSTL 414 (954)
Q Consensus 336 ~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~ws-pDg~~i~ 414 (954)
.+.|++|++.|++....+... ...+.++|..++..+.+....... +. .....+.|. +|+..++
T Consensus 188 ~v~W~~d~~~l~~~~~nR~q~--------~~~l~~~d~~tg~~~~~~~e~~~~----Wv----~~~~~~~~~~~~~~~~l 251 (353)
T PF00930_consen 188 RVGWSPDGKRLWVQWLNRDQN--------RLDLVLCDASTGETRVVLEETSDG----WV----DVYDPPHFLGPDGNEFL 251 (353)
T ss_dssp EEEEEETTEEEEEEEEETTST--------EEEEEEEEECTTTCEEEEEEESSS----SS----SSSSEEEE-TTTSSEEE
T ss_pred cceecCCCcEEEEEEcccCCC--------EEEEEEEECCCCceeEEEEecCCc----ce----eeecccccccCCCCEEE
Confidence 899999999777766554311 126777888766555444211111 11 111345565 8898887
Q ss_pred EEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCc-eeeccCCceEEEEEeccc-cceEEEEEcCC-CC
Q 002194 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG-ISWCDDSLALVYESWYKT-RRTRTWVISPG-SK 491 (954)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~-~~~spDg~~l~~~~~~~~-~~~~l~~~d~~-~~ 491 (954)
+... . ++..+||+++. +++..++||.+++.+.. +.|+++++.|+|.+..++ .+.+||+++++ ++
T Consensus 252 ~~s~-~---------~G~~hly~~~~---~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~ 318 (353)
T PF00930_consen 252 WISE-R---------DGYRHLYLYDL---DGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG 318 (353)
T ss_dssp EEEE-T---------TSSEEEEEEET---TSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred EEEE-c---------CCCcEEEEEcc---cccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence 7754 3 34779999996 78888999999998854 789999999999988644 56899999999 64
Q ss_pred CCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEee
Q 002194 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (954)
Q Consensus 492 ~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~ 530 (954)
+++.|+...... +. ++|||||++++....+
T Consensus 319 --~~~~LT~~~~~~-~~------~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 319 --EPKCLTCEDGDH-YS------ASFSPDGKYYVDTYSG 348 (353)
T ss_dssp --EEEESSTTSSTT-EE------EEE-TTSSEEEEEEES
T ss_pred --CeEeccCCCCCc-eE------EEECCCCCEEEEEEcC
Confidence 677887655433 22 7899999999888743
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=177.46 Aligned_cols=223 Identities=17% Similarity=0.125 Sum_probs=154.7
Q ss_pred EEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC
Q 002194 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (954)
+.+.||..+++.+|.|.. .+.|+|+++||.... .......+..|+++||.|++ .|.
T Consensus 5 ~~~~~g~~l~~~~~~~~~------~~~~~v~llHG~~~~---------------~~~~~~~~~~l~~~g~~via---~D~ 60 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPIT------YPKALVFISHGAGEH---------------SGRYEELAENISSLGILVFS---HDH 60 (276)
T ss_pred eecCCCCEEEEEeccCCC------CCCEEEEEeCCCccc---------------cchHHHHHHHHHhCCCEEEE---ccC
Confidence 345699999999998842 236899999996311 11123467778889999999 777
Q ss_pred CCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC
Q 002194 724 IGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800 (954)
Q Consensus 724 ~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~ 800 (954)
+|+|.+.... ..+...++|+...++++.+.. ...+++++|||+||.+|+.++.++|++++++|+++|..+.....
T Consensus 61 ~G~G~S~~~~~~~~~~~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~ 138 (276)
T PHA02857 61 IGHGRSNGEKMMIDDFGVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVP 138 (276)
T ss_pred CCCCCCCCccCCcCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEecccccccccc
Confidence 7888875422 233556788888888876642 23579999999999999999999999999999999865422100
Q ss_pred C-----------CCccc----cchhh--h---cHHHHH-------------------hc--CcccccCCCCCCEEEEEeC
Q 002194 801 F-----------GFQNE----DRTLW--E---ATSTYV-------------------EM--SPFMSANKLKKPILLVHGE 839 (954)
Q Consensus 801 ~-----------~~~~~----~~~~~--~---~~~~~~-------------------~~--sp~~~~~~~~~P~Lii~G~ 839 (954)
. .+... ....+ . ....+. .. .....+.++++|+|++||+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~ 218 (276)
T PHA02857 139 RLNLLAAKLMGIFYPNKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGT 218 (276)
T ss_pred HHHHHHHHHHHHhCCCCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecC
Confidence 0 00000 00000 0 000000 00 0112456789999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCccc--HHHHHHHHHHHHHHh
Q 002194 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES--IMHVLWETDRWLQKY 897 (954)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~fl~~~ 897 (954)
+|.++| +..+.++++.+.. ++++.++++++|....... ++.+++.+.+||+++
T Consensus 219 ~D~i~~--~~~~~~l~~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 219 NNEISD--VSGAYYFMQHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred CCCcCC--hHHHHHHHHHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 999998 8999888887643 4789999999999865433 678999999999986
|
|
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-18 Score=160.72 Aligned_cols=238 Identities=17% Similarity=0.189 Sum_probs=175.4
Q ss_pred CCCCCCcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHH-H
Q 002194 628 PHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV-L 706 (954)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 706 (954)
+-+.|....++.+++++.+.|..++++++.+-+. ..|+++++|+.... + ++.-..+ .
T Consensus 43 ~vptP~~~n~pye~i~l~T~D~vtL~a~~~~~E~-------S~pTlLyfh~NAGN-------m--------Ghr~~i~~~ 100 (300)
T KOG4391|consen 43 NVPTPKEFNMPYERIELRTRDKVTLDAYLMLSES-------SRPTLLYFHANAGN-------M--------GHRLPIARV 100 (300)
T ss_pred CCCCccccCCCceEEEEEcCcceeEeeeeecccC-------CCceEEEEccCCCc-------c--------cchhhHHHH
Confidence 3445666778899999999999999999998322 37999999995311 1 1111122 2
Q ss_pred HHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccE
Q 002194 707 LWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (954)
Q Consensus 707 ~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a 786 (954)
.+...+..|+. ..++|||.+++... -..+.-|..++++||..++..|..+|.++|.|.||..|+.+|++..+++.|
T Consensus 101 fy~~l~mnv~i---vsYRGYG~S~Gsps-E~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~ 176 (300)
T KOG4391|consen 101 FYVNLKMNVLI---VSYRGYGKSEGSPS-EEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISA 176 (300)
T ss_pred HHHHcCceEEE---EEeeccccCCCCcc-ccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheee
Confidence 34568999999 55678888876432 245677899999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCC--CCCCCccc--cchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC
Q 002194 787 GIARSGAYNRTL--TPFGFQNE--DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862 (954)
Q Consensus 787 ~v~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g 862 (954)
+|...-+.+... .+..+... .-..|.-.. .++....+.+.+.|+|++.|..|..|| +-+.+++|+...+.
T Consensus 177 ~ivENTF~SIp~~~i~~v~p~~~k~i~~lc~kn---~~~S~~ki~~~~~P~LFiSGlkDelVP--P~~Mr~Ly~~c~S~- 250 (300)
T KOG4391|consen 177 IIVENTFLSIPHMAIPLVFPFPMKYIPLLCYKN---KWLSYRKIGQCRMPFLFISGLKDELVP--PVMMRQLYELCPSR- 250 (300)
T ss_pred eeeechhccchhhhhheeccchhhHHHHHHHHh---hhcchhhhccccCceEEeecCccccCC--cHHHHHHHHhCchh-
Confidence 999887665311 22222211 111122111 334445566788999999999999999 99999999988765
Q ss_pred CcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhccc
Q 002194 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 863 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (954)
.+++..||++.|.-+... .-+++.|.+||.+..+.
T Consensus 251 -~Krl~eFP~gtHNDT~i~--dGYfq~i~dFlaE~~~~ 285 (300)
T KOG4391|consen 251 -TKRLAEFPDGTHNDTWIC--DGYFQAIEDFLAEVVKS 285 (300)
T ss_pred -hhhheeCCCCccCceEEe--ccHHHHHHHHHHHhccC
Confidence 458899999999865433 45678899999987654
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=166.98 Aligned_cols=325 Identities=16% Similarity=0.226 Sum_probs=197.0
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
+-.++|||||++||.-+.+ ..+++||+.+. .+....++ +..+
T Consensus 118 Vl~~~fsp~g~~l~tGsGD---------------------------------~TvR~WD~~Te---Tp~~t~Kg--H~~W 159 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGD---------------------------------TTVRLWDLDTE---TPLFTCKG--HKNW 159 (480)
T ss_pred EEEEEecCCCceEEecCCC---------------------------------ceEEeeccCCC---CcceeecC--CccE
Confidence 4467899999999887765 68899999541 12222333 2248
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce--eecccCCCccccccccceeEe-----cCCeEEEEEec
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIYLNAIFDNFVWV-----NNSTLLVCTIP 263 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~ws-----pDG~~l~~~~~ 263 (954)
+..++|||||++||... ....|.++|+.+|+. +.|..+.. + +..++|- |.+++|+.+
T Consensus 160 VlcvawsPDgk~iASG~---------~dg~I~lwdpktg~~~g~~l~gH~K-~----It~Lawep~hl~p~~r~las~-- 223 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGS---------KDGSIRLWDPKTGQQIGRALRGHKK-W----ITALAWEPLHLVPPCRRLASS-- 223 (480)
T ss_pred EEEEEECCCcchhhccc---------cCCeEEEecCCCCCcccccccCccc-c----eeEEeecccccCCCccceecc--
Confidence 99999999999999844 467888889888765 33433332 2 6778886 566666644
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCC-ccccccccC
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPS 340 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~-~~~~~~~~S 340 (954)
+ ..+.+.++|+ .| ....+... ..++-+.|-
T Consensus 224 -------------------s----------------------------kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG 256 (480)
T KOG0271|consen 224 -------------------S----------------------------KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG 256 (480)
T ss_pred -------------------c----------------------------CCCCEEEEEccCceEEEEeccCccceEEEEEc
Confidence 1 1123555566 33 34445444 777888887
Q ss_pred CCCcEEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEeccCCCc-ccCCccccccccCccceeeccCCCCceEEEE
Q 002194 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLA-EDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (954)
Q Consensus 341 pDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l~~~~~~-~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~ 418 (954)
-+| ++|++.. +.+|.+|+... .-.+.+..+..- +.+....+. -.+.=+|-|-|+..--..+
T Consensus 257 G~g--liySgS~------------DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy---~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 257 GEG--LIYSGSQ------------DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDY---VLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred CCc--eEEecCC------------CceEEEEEccchhHHHhhcccchheeeeeccchh---hhhccccccccccCCChHH
Confidence 555 7776633 34899998874 344555443311 000000000 0011233344432110000
Q ss_pred ------------eccCCCccccccCCCeEEEEecCCCCCC-CceEEeecccccCceeeccCCceEEEEEeccccceEEEE
Q 002194 419 ------------TQDGGDAKVEVTPRDIIYTQQAEPVQGE-GPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (954)
Q Consensus 419 ------------~~~~~~~~~~~~~~~~l~~~~~~~~~g~-~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (954)
..+.+...+..+....+++|+ |.... ...+.+.+..-+..+.||||+++|+.++.++. .+||.
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~--p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS--VkLW~ 395 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSDDFTLFLWN--PFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS--VKLWD 395 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecCCceEEEec--ccccccchhhhhchhhheeeEEECCCccEEEEeecccc--eeeee
Confidence 001111112234556889998 45544 34567888888999999999999999988775 66775
Q ss_pred EcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeE
Q 002194 486 ISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (954)
Q Consensus 486 ~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 565 (954)
.+ +| +....+.++...+|. ++||.|.+.|+..+.+ ..|.+||+.+++..
T Consensus 396 g~--tG--k~lasfRGHv~~VYq------vawsaDsRLlVS~SkD---------------------sTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 396 GR--TG--KFLASFRGHVAAVYQ------VAWSADSRLLVSGSKD---------------------STLKVWDVRTKKLK 444 (480)
T ss_pred CC--Cc--chhhhhhhccceeEE------EEeccCccEEEEcCCC---------------------ceEEEEEeeeeeec
Confidence 44 33 334445667777777 8999999988877632 24999999888765
Q ss_pred EEeccCcccccceeEEeccCCccccccccCCEEE
Q 002194 566 RIWESDKEKYYETTVALMSDQTEGDLYLNQLKIL 599 (954)
Q Consensus 566 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 599 (954)
.=....++ .+.. .+|||||.+++
T Consensus 445 ~DLpGh~D----EVf~-------vDwspDG~rV~ 467 (480)
T KOG0271|consen 445 QDLPGHAD----EVFA-------VDWSPDGQRVA 467 (480)
T ss_pred ccCCCCCc----eEEE-------EEecCCCceee
Confidence 43332222 1222 47999998754
|
|
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=164.61 Aligned_cols=219 Identities=17% Similarity=0.199 Sum_probs=160.7
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAIL 716 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~ 716 (954)
..+.+..++..|..+.+..+.|+.+ ..++++|+||..+..+ +. ..+...+.. .++.|+
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~------~~~~lly~hGNa~Dlg----q~-----------~~~~~~l~~~ln~nv~ 92 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA------AHPTLLYSHGNAADLG----QM-----------VELFKELSIFLNCNVV 92 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc------cceEEEEcCCcccchH----HH-----------HHHHHHHhhcccceEE
Confidence 4566777888898999999888642 3689999999522111 00 011222222 489999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC
Q 002194 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (954)
. +|+.|+|.+.+...- ...++|+.++.+||++... .+++|+++|+|+|...++.+|++.| .+|+|+++|+.+.
T Consensus 93 ~---~DYSGyG~S~G~psE-~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~ 165 (258)
T KOG1552|consen 93 S---YDYSGYGRSSGKPSE-RNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSG 165 (258)
T ss_pred E---EecccccccCCCccc-ccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhh
Confidence 9 788899998664322 3789999999999999865 7789999999999999999999997 9999999998773
Q ss_pred CCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 002194 797 TLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876 (954)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 876 (954)
....+ .....+.| +..+.-++.+..+++|+||+||++|++|+ ..++++++++++.+ ++..+..|+||.
T Consensus 166 ~rv~~--~~~~~~~~-----~d~f~~i~kI~~i~~PVLiiHgtdDevv~--~sHg~~Lye~~k~~---~epl~v~g~gH~ 233 (258)
T KOG1552|consen 166 MRVAF--PDTKTTYC-----FDAFPNIEKISKITCPVLIIHGTDDEVVD--FSHGKALYERCKEK---VEPLWVKGAGHN 233 (258)
T ss_pred hhhhc--cCcceEEe-----eccccccCcceeccCCEEEEecccCceec--ccccHHHHHhcccc---CCCcEEecCCCc
Confidence 32211 11111222 12223366778889999999999999999 99999999999877 788889999997
Q ss_pred CCCcccHHHHHHHHHHHHHHhc
Q 002194 877 YAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 877 ~~~~~~~~~~~~~i~~fl~~~l 898 (954)
.. +...++.+.+..|+..-+
T Consensus 234 ~~--~~~~~yi~~l~~f~~~~~ 253 (258)
T KOG1552|consen 234 DI--ELYPEYIEHLRRFISSVL 253 (258)
T ss_pred cc--ccCHHHHHHHHHHHHHhc
Confidence 53 333466677777776543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-16 Score=180.56 Aligned_cols=253 Identities=16% Similarity=0.152 Sum_probs=180.1
Q ss_pred CCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCC
Q 002194 198 QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPL 277 (954)
Q Consensus 198 PDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~ 277 (954)
..+.+|+|.+... .++..+||++|.+++..++++..... +..+.|||||+.|+|+....
T Consensus 153 ~~~~~~~~~~~~~----~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~~Spdg~~la~~~~~~------------ 211 (417)
T TIGR02800 153 AFSTRIAYVSKSG----KSRRYELQVADYDGANPQTITRSREP-----ILSPAWSPDGQKLAYVSFES------------ 211 (417)
T ss_pred CcCCEEEEEEEeC----CCCcceEEEEcCCCCCCEEeecCCCc-----eecccCCCCCCEEEEEEcCC------------
Confidence 3467899987532 35678999999998888989875542 45889999999999872100
Q ss_pred CCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCc
Q 002194 278 GPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPY 355 (954)
Q Consensus 278 ~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~ 355 (954)
+..+||++++ +|+.+.+... +....+.|||||+.|+|+.....
T Consensus 212 ----------------------------------~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~- 256 (417)
T TIGR02800 212 ----------------------------------GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG- 256 (417)
T ss_pred ----------------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC-
Confidence 2246999999 7877776654 55667999999999999864321
Q ss_pred ccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeE
Q 002194 356 SFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDII 435 (954)
Q Consensus 356 ~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l 435 (954)
..+|++++++++..+.++..... ...+.|+|||+.|+|..+. .....|
T Consensus 257 ---------~~~i~~~d~~~~~~~~l~~~~~~-------------~~~~~~s~dg~~l~~~s~~----------~g~~~i 304 (417)
T TIGR02800 257 ---------NPDIYVMDLDGKQLTRLTNGPGI-------------DTEPSWSPDGKSIAFTSDR----------GGSPQI 304 (417)
T ss_pred ---------CccEEEEECCCCCEEECCCCCCC-------------CCCEEECCCCCEEEEEECC----------CCCceE
Confidence 23799999998877777654311 2357899999999887321 123479
Q ss_pred EEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCe
Q 002194 436 YTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMM 515 (954)
Q Consensus 436 ~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 515 (954)
|++++ .+++.++++........+.|||||+.|+|.....+ ..+|+.++++++ ..+.++.... .. . +
T Consensus 305 y~~d~---~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~-~~~i~~~d~~~~--~~~~l~~~~~--~~----~--p 370 (417)
T TIGR02800 305 YMMDA---DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGG-GFNIAVMDLDGG--GERVLTDTGL--DE----S--P 370 (417)
T ss_pred EEEEC---CCCCEEEeecCCCCccCeEECCCCCEEEEEEccCC-ceEEEEEeCCCC--CeEEccCCCC--CC----C--c
Confidence 99996 66777777766556678999999999999876553 468999999874 4444443211 11 1 5
Q ss_pred eeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEecc
Q 002194 516 RRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570 (954)
Q Consensus 516 ~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 570 (954)
.|+|||++|+|..... ....|++++.+++..+.++..
T Consensus 371 ~~spdg~~l~~~~~~~------------------~~~~l~~~~~~g~~~~~~~~~ 407 (417)
T TIGR02800 371 SFAPNGRMILYATTRG------------------GRGVLGLVSTDGRFRARLPLG 407 (417)
T ss_pred eECCCCCEEEEEEeCC------------------CcEEEEEEECCCceeeECCCC
Confidence 7999999999987421 123588888877766666554
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.7e-17 Score=165.83 Aligned_cols=212 Identities=20% Similarity=0.193 Sum_probs=163.6
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (954)
+.++++..+ .++.+++.+|++ +++.|.||++|+-. +........++.||.+||.|++++
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~-----~~~~P~VIv~hei~---------------Gl~~~i~~~a~rlA~~Gy~v~~Pd 61 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAG-----AGGFPGVIVLHEIF---------------GLNPHIRDVARRLAKAGYVVLAPD 61 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCc-----CCCCCEEEEEeccc---------------CCchHHHHHHHHHHhCCcEEEech
Confidence 456777666 899999999986 34459999999842 111223356788999999999977
Q ss_pred CCCCCCCCCccc--c----h-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEE
Q 002194 720 TTPIIGEGDEEA--N----D-----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (954)
Q Consensus 720 ~~~~~G~G~~~~--~----~-----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (954)
.+...|...... . . ........|+.++++||..++.+++++|+++|+||||.+++.++.+.| .++|+|
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v 140 (236)
T COG0412 62 LYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAV 140 (236)
T ss_pred hhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEE
Confidence 765444222211 0 0 112567899999999999999899999999999999999999999986 799999
Q ss_pred EeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002194 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (954)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (954)
+..|..-. +......++++|+|+.+|+.|..+| ...-..+.+++...++.+++.
T Consensus 141 ~fyg~~~~------------------------~~~~~~~~~~~pvl~~~~~~D~~~p--~~~~~~~~~~~~~~~~~~~~~ 194 (236)
T COG0412 141 AFYGGLIA------------------------DDTADAPKIKVPVLLHLAGEDPYIP--AADVDALAAALEDAGVKVDLE 194 (236)
T ss_pred EecCCCCC------------------------CcccccccccCcEEEEecccCCCCC--hhHHHHHHHHHHhcCCCeeEE
Confidence 99884210 0111145788999999999999998 888889999999998899999
Q ss_pred EeCCCCCcCCCcc----------cHHHHHHHHHHHHHHhcc
Q 002194 869 ILPFESHGYAARE----------SIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 869 ~~~~~~H~~~~~~----------~~~~~~~~i~~fl~~~l~ 899 (954)
+|+++.|+|.... ..+..++++++||++++.
T Consensus 195 ~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 195 IYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred EeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999997431 246788899999999874
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.3e-17 Score=176.41 Aligned_cols=229 Identities=15% Similarity=0.140 Sum_probs=156.9
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEc
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (954)
.+...+...+|.++++..+.|+. +.++||++||... ........+..++++||.|+.
T Consensus 30 ~~~~~~~~~~g~~l~~~~~~~~~-------~~~~vll~HG~~~---------------~~~~y~~~~~~l~~~g~~v~~- 86 (330)
T PRK10749 30 REEAEFTGVDDIPIRFVRFRAPH-------HDRVVVICPGRIE---------------SYVKYAELAYDLFHLGYDVLI- 86 (330)
T ss_pred ccceEEEcCCCCEEEEEEccCCC-------CCcEEEEECCccc---------------hHHHHHHHHHHHHHCCCeEEE-
Confidence 35566777899999998887631 2468999999521 111112345567889999999
Q ss_pred CCCCCCCCCCcccc--------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEe
Q 002194 719 PTTPIIGEGDEEAN--------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (954)
Q Consensus 719 ~~~~~~G~G~~~~~--------~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (954)
.|.+|+|.+... .......++|+.++++.+... .+..++.++||||||.+++.++.++|+.++++|+.
T Consensus 87 --~D~~G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~ 162 (330)
T PRK10749 87 --IDHRGQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALC 162 (330)
T ss_pred --EcCCCCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEE
Confidence 666788877432 123466778888888877554 23468999999999999999999999999999999
Q ss_pred ccCCCCCCC-C---------------------------CC-Cc--c----ccchhh-hcHHHHHhcCc------------
Q 002194 791 SGAYNRTLT-P---------------------------FG-FQ--N----EDRTLW-EATSTYVEMSP------------ 822 (954)
Q Consensus 791 ~~~~~~~~~-~---------------------------~~-~~--~----~~~~~~-~~~~~~~~~sp------------ 822 (954)
+|....... + +. .. . ...... ...+.+. .+|
T Consensus 163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 241 (330)
T PRK10749 163 APMFGIVLPLPSWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYA-DDPELRVGGPTYHWV 241 (330)
T ss_pred CchhccCCCCCcHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH-hCCCcccCCCcHHHH
Confidence 886431100 0 00 00 0 000000 0001111 111
Q ss_pred ----------ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC---CcEEEEEeCCCCCcCCCccc--HHHHH
Q 002194 823 ----------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG---ALCRLVILPFESHGYAARES--IMHVL 887 (954)
Q Consensus 823 ----------~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~H~~~~~~~--~~~~~ 887 (954)
...+.+++.|+||+||++|.+|+ +..++++++.++..+ .++++++||+++|.+..... ++.++
T Consensus 242 ~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~vv~--~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~ 319 (330)
T PRK10749 242 RESILAGEQVLAGAGDITTPLLLLQAEEERVVD--NRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVAL 319 (330)
T ss_pred HHHHHHHHHHHhhccCCCCCEEEEEeCCCeeeC--HHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHH
Confidence 13456788999999999999999 899999999987765 34689999999999764443 67788
Q ss_pred HHHHHHHHHh
Q 002194 888 WETDRWLQKY 897 (954)
Q Consensus 888 ~~i~~fl~~~ 897 (954)
+.|++||+++
T Consensus 320 ~~i~~fl~~~ 329 (330)
T PRK10749 320 NAIVDFFNRH 329 (330)
T ss_pred HHHHHHHhhc
Confidence 9999999875
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.1e-17 Score=174.94 Aligned_cols=231 Identities=16% Similarity=0.147 Sum_probs=158.8
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAIL 716 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~ 716 (954)
..+.++++..+| .+.+.+|.|.. . +.|+||++|||.|..+ +...+ ......|+. .|+.|+
T Consensus 56 ~~~~~~i~~~~g-~i~~~~y~P~~---~---~~p~vv~~HGGg~~~g--------~~~~~----~~~~~~la~~~g~~Vv 116 (318)
T PRK10162 56 ATRAYMVPTPYG-QVETRLYYPQP---D---SQATLFYLHGGGFILG--------NLDTH----DRIMRLLASYSGCTVI 116 (318)
T ss_pred eEEEEEEecCCC-ceEEEEECCCC---C---CCCEEEEEeCCcccCC--------Cchhh----hHHHHHHHHHcCCEEE
Confidence 467788887777 59999999953 1 2699999999865432 22222 134556776 699999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC------CCcccEE
Q 002194 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA------PHLFCCG 787 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~------p~~~~a~ 787 (954)
.++|+.... ..++..++|+.++++|+.++ ..+|+++|+|+|+|+||++|+.++.+. +..++++
T Consensus 117 ~vdYrlape--------~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~ 188 (318)
T PRK10162 117 GIDYTLSPE--------ARFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGV 188 (318)
T ss_pred EecCCCCCC--------CCCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhhe
Confidence 988764332 22345689999999999764 347899999999999999999988753 3568999
Q ss_pred EEeccCCCCCCCCCCCccccch-hh--hcHHH----HH-----hcCccccc--CCC---CCCEEEEEeCCCCCCCCchHH
Q 002194 788 IARSGAYNRTLTPFGFQNEDRT-LW--EATST----YV-----EMSPFMSA--NKL---KKPILLVHGEEDNNSGTLTMQ 850 (954)
Q Consensus 788 v~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~-----~~sp~~~~--~~~---~~P~Lii~G~~D~~v~~~~~~ 850 (954)
|+++|+++.............. .+ ...+. |. ..+|.... ..+ -.|+||++|+.|.. .++
T Consensus 189 vl~~p~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L----~de 264 (318)
T PRK10162 189 LLWYGLYGLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPL----LDD 264 (318)
T ss_pred EEECCccCCCCChhHHHhCCCccccCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcC----cCh
Confidence 9999987743211000000000 00 00011 10 12232211 223 36999999999976 468
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCcCCCc----ccHHHHHHHHHHHHHHhcc
Q 002194 851 SDRFFNALKGHGALCRLVILPFESHGYAAR----ESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~fl~~~l~ 899 (954)
++.+.++|++.|+++++++|+++.|+|... +...+.++.+.+||.++++
T Consensus 265 ~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 265 SRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998533 2355778889999998864
|
|
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-17 Score=160.30 Aligned_cols=232 Identities=17% Similarity=0.160 Sum_probs=161.2
Q ss_pred CCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEE
Q 002194 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (954)
Q Consensus 636 ~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (954)
..++-.++|++.+|.+|.||+.+|.. .+++.|+||..||-....+. +.-...|+..||+|
T Consensus 53 ~ve~ydvTf~g~~g~rI~gwlvlP~~----~~~~~P~vV~fhGY~g~~g~----------------~~~~l~wa~~Gyav 112 (321)
T COG3458 53 RVEVYDVTFTGYGGARIKGWLVLPRH----EKGKLPAVVQFHGYGGRGGE----------------WHDMLHWAVAGYAV 112 (321)
T ss_pred ceEEEEEEEeccCCceEEEEEEeecc----cCCccceEEEEeeccCCCCC----------------ccccccccccceeE
Confidence 34567899999999999999999975 23569999999994221111 11234578899999
Q ss_pred EEcCCCCCCCCCC----c---------------c-cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH
Q 002194 716 LGGPTTPIIGEGD----E---------------E-ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (954)
Q Consensus 716 ~~~~~~~~~G~G~----~---------------~-~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 775 (954)
+.++.+|..+... . . .+..+....+.|+..+++.+.+...+|++||++.|.|.||.+++.
T Consensus 113 f~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglala 192 (321)
T COG3458 113 FVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALA 192 (321)
T ss_pred EEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhh
Confidence 9966665544311 0 0 011223456899999999999999999999999999999999999
Q ss_pred HHHhCCCcccEEEEeccCCCCCCCCCCCcccc-----chhh--------hcHHHHHhcCcccccCCCCCCEEEEEeCCCC
Q 002194 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNED-----RTLW--------EATSTYVEMSPFMSANKLKKPILLVHGEEDN 842 (954)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~-----~~~~--------~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~ 842 (954)
+++.. .+++++++..|++...-.-+....+. .... +-.+.+...+-.+.+.+++.|+|+..|-.|+
T Consensus 193 aaal~-~rik~~~~~~Pfl~df~r~i~~~~~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~ 271 (321)
T COG3458 193 AAALD-PRIKAVVADYPFLSDFPRAIELATEGPYDEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDP 271 (321)
T ss_pred hhhcC-hhhhcccccccccccchhheeecccCcHHHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCC
Confidence 99999 57999999999765211111111000 0000 0112223334456778899999999999999
Q ss_pred CCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 843 NSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 843 ~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
+|| +.-...+|+++... +++.+||.-+|.-.. ....++++.|+..-
T Consensus 272 vcp--PstqFA~yN~l~~~---K~i~iy~~~aHe~~p----~~~~~~~~~~l~~l 317 (321)
T COG3458 272 VCP--PSTQFAAYNALTTS---KTIEIYPYFAHEGGP----GFQSRQQVHFLKIL 317 (321)
T ss_pred CCC--ChhhHHHhhcccCC---ceEEEeeccccccCc----chhHHHHHHHHHhh
Confidence 998 88888888887644 677788877787532 12334567777653
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.8e-16 Score=171.91 Aligned_cols=302 Identities=15% Similarity=0.124 Sum_probs=190.1
Q ss_pred cCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCC
Q 002194 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVP 276 (954)
Q Consensus 197 SPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~ 276 (954)
||||+.++|..+....-..+....+|++|+++++.++++..... ...+.|||||+.|+|+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~-----~~~~~~sP~g~~~~~v--------------- 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPK-----LQDAKWSPDGKYIAFV--------------- 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETT-----BSEEEE-SSSTEEEEE---------------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccc-----cccceeecCCCeeEEE---------------
Confidence 89999999977654333345678999999999999999876222 5689999999999998
Q ss_pred CCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCc-------------------cccc
Q 002194 277 LGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPA-------------------VYTS 336 (954)
Q Consensus 277 ~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~-------------------~~~~ 336 (954)
...+||+.++ ++..++|+..+ ....
T Consensus 61 -----------------------------------~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~ 105 (353)
T PF00930_consen 61 -----------------------------------RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSA 105 (353)
T ss_dssp -----------------------------------ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBS
T ss_pred -----------------------------------ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccc
Confidence 2345888887 77777777642 1235
Q ss_pred cccCCCCcEEEEEeecCCccc--------------------ccccCCC---CcceEEEeccCceEEEeccCCCcccCCcc
Q 002194 337 LDPSPDEKYILISSIHRPYSF--------------------IVPCGRF---PRQVGVWTTDGIFVRELCDLPLAEDIPIA 393 (954)
Q Consensus 337 ~~~SpDGk~l~~~s~~~~~~~--------------------~~~~~~~---~~~l~l~d~~g~~~~~l~~~~~~~~~p~~ 393 (954)
+.|||||++|||...+...-. ..|.... ...++++++++++...+......
T Consensus 106 ~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~------ 179 (353)
T PF00930_consen 106 VWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL------ 179 (353)
T ss_dssp EEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH------
T ss_pred eEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc------
Confidence 669999999999886642100 0011111 12567777776654433322100
Q ss_pred ccccccCccceeeccCCCCceEE-EEeccCCCccccccCCCeEEEEecCCCCCCCceEEee--ccccc---Cceeec-cC
Q 002194 394 FNSVRKGMRSINWRSDKPSTLYW-AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRY---GGISWC-DD 466 (954)
Q Consensus 394 ~~~~~~g~~~~~wspDg~~i~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~---~~~~~s-pD 466 (954)
.........+.|++|++.+++. .++. ...-.++++++ .++..+.+.. .+.-+ ..+.|. ++
T Consensus 180 -~~~~~yl~~v~W~~d~~~l~~~~~nR~---------q~~~~l~~~d~---~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 180 -NPQDYYLTRVGWSPDGKRLWVQWLNRD---------QNRLDLVLCDA---STGETRVVLEETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp -HTSSEEEEEEEEEETTEEEEEEEEETT---------STEEEEEEEEE---CTTTCEEEEEEESSSSSSSSSEEEE-TTT
T ss_pred -CCCccCcccceecCCCcEEEEEEcccC---------CCEEEEEEEEC---CCCceeEEEEecCCcceeeecccccccCC
Confidence 0001223568999999955554 3332 12335677775 4444444421 12222 235555 89
Q ss_pred CceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCC
Q 002194 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGAT 546 (954)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (954)
+..+++.+..++ ..+||.++.+++ .++.+|.+...... .+.++++++.|+|.. ....
T Consensus 247 ~~~~l~~s~~~G-~~hly~~~~~~~--~~~~lT~G~~~V~~------i~~~d~~~~~iyf~a--------------~~~~ 303 (353)
T PF00930_consen 247 GNEFLWISERDG-YRHLYLYDLDGG--KPRQLTSGDWEVTS------ILGWDEDNNRIYFTA--------------NGDN 303 (353)
T ss_dssp SSEEEEEEETTS-SEEEEEEETTSS--EEEESS-SSS-EEE------EEEEECTSSEEEEEE--------------SSGG
T ss_pred CCEEEEEEEcCC-CcEEEEEccccc--ceeccccCceeecc------cceEcCCCCEEEEEe--------------cCCC
Confidence 999988888554 689999999986 45666655433211 155667777777666 3322
Q ss_pred CCCCCCeEEEEECC-CCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCc
Q 002194 547 PEGNIPFLDLFDIN-TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENT 609 (954)
Q Consensus 547 ~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~ 609 (954)
....+||.++++ +++.++||...+.. ...+|||||++++..++++..|+
T Consensus 304 --p~~r~lY~v~~~~~~~~~~LT~~~~~~------------~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 304 --PGERHLYRVSLDSGGEPKCLTCEDGDH------------YSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp --TTSBEEEEEETTETTEEEESSTTSSTT------------EEEEE-TTSSEEEEEEESSSSCE
T ss_pred --CCceEEEEEEeCCCCCeEeccCCCCCc------------eEEEECCCCCEEEEEEcCCCCCC
Confidence 245789999999 99999999888651 13579999999999999998874
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-15 Score=169.07 Aligned_cols=231 Identities=15% Similarity=0.132 Sum_probs=158.0
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEc
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (954)
.....+...+|..+++..|.|.. ..+.|+||++||.... ......++..|+++||.|++
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~-----~~~~~~Vl~lHG~~~~---------------~~~~~~~a~~L~~~Gy~V~~- 168 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAA-----GEMRGILIIIHGLNEH---------------SGRYLHFAKQLTSCGFGVYA- 168 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCC-----CCCceEEEEECCchHH---------------HHHHHHHHHHHHHCCCEEEE-
Confidence 45566777888899999998853 1235899999995311 01112456678889999999
Q ss_pred CCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC---cccEEEEecc
Q 002194 719 PTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH---LFCCGIARSG 792 (954)
Q Consensus 719 ~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~~ 792 (954)
++..|+|.+.... .......+|+.++++++.... +..++.++||||||.+++.++. +|+ +++++|+.+|
T Consensus 169 --~D~rGhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP 243 (395)
T PLN02652 169 --MDWIGHGGSDGLHGYVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSP 243 (395)
T ss_pred --eCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECc
Confidence 6777888775432 234566889999999997652 2347999999999999987664 553 7999999998
Q ss_pred CCCCCCC---------------C-CCCcccc---chhhhcHHH----H------------------Hhc-C-cccccCCC
Q 002194 793 AYNRTLT---------------P-FGFQNED---RTLWEATST----Y------------------VEM-S-PFMSANKL 829 (954)
Q Consensus 793 ~~~~~~~---------------~-~~~~~~~---~~~~~~~~~----~------------------~~~-s-p~~~~~~~ 829 (954)
....... + +.+.... .....++.. + .+. . ....+.++
T Consensus 244 ~l~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I 323 (395)
T PLN02652 244 ALRVKPAHPIVGAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSV 323 (395)
T ss_pred ccccccchHHHHHHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccC
Confidence 7542210 0 0000000 000000000 0 000 0 12345678
Q ss_pred CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
++|+||+||++|.++| +..++++++.+... .+++++||+++|........+.+++.+.+||..++.
T Consensus 324 ~vPvLIi~G~~D~vvp--~~~a~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 324 TVPFMVLHGTADRVTD--PLASQDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred CCCEEEEEeCCCCCCC--HHHHHHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999 99999999987543 357888999999986655788999999999999874
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-16 Score=173.18 Aligned_cols=226 Identities=18% Similarity=0.180 Sum_probs=159.7
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
...+.|||||+.++|+... ... + ..++++++.. ++...+... ...
T Consensus 195 ~~~p~ws~~~~~~~y~~f~---------------------~~~-~-------~~i~~~~l~~----g~~~~i~~~--~g~ 239 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFE---------------------LGG-C-------PRIYYLDLNT----GKRPVILNF--NGN 239 (425)
T ss_pred eeccccCcCCCceEEEEEe---------------------cCC-C-------ceEEEEeccC----Cccceeecc--CCc
Confidence 4468999999999998653 111 0 2689999865 444455432 346
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
...|+|||||++|+|+.. +++..+||++|+.++..++||...+. -..+.|||||+.|+|++.
T Consensus 240 ~~~P~fspDG~~l~f~~~------rdg~~~iy~~dl~~~~~~~Lt~~~gi-----~~~Ps~spdG~~ivf~Sd------- 301 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSS------RDGSPDIYLMDLDGKNLPRLTNGFGI-----NTSPSWSPDGSKIVFTSD------- 301 (425)
T ss_pred cCCccCCCCCCEEEEEEC------CCCCccEEEEcCCCCcceecccCCcc-----ccCccCCCCCCEEEEEeC-------
Confidence 789999999999999875 66899999999999998888877664 348999999999999821
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEE
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILI 348 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~ 348 (954)
.+ +..+||++++ .+..++++.. +....+.|||||++|+|
T Consensus 302 --------------r~-------------------------G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 302 --------------RG-------------------------GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred --------------CC-------------------------CCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEE
Confidence 10 4557999999 5677888877 66669999999999999
Q ss_pred EeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
.+..+. ..++.+.++..+. .+.++..... ..+.|+|||+.+.|.....
T Consensus 343 ~~~~~g----------~~~i~~~~~~~~~~~~~lt~~~~~--------------e~ps~~~ng~~i~~~s~~~------- 391 (425)
T COG0823 343 ESSSGG----------QWDIDKNDLASGGKIRILTSTYLN--------------ESPSWAPNGRMIMFSSGQG------- 391 (425)
T ss_pred EeccCC----------ceeeEEeccCCCCcEEEccccccC--------------CCCCcCCCCceEEEeccCC-------
Confidence 983321 1257777776443 5555543222 3567999999998872221
Q ss_pred cccCCCeEEEEecCCCCCCCceEEeecccccCceeecc
Q 002194 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD 465 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~sp 465 (954)
....++.... ++...+.+....+.+..++|+|
T Consensus 392 ---~~~~l~~~s~---~g~~~~~~~~~~~~~~~p~w~~ 423 (425)
T COG0823 392 ---GGSVLSLVSL---DGRVSRPLPLADGDVRVPAWSP 423 (425)
T ss_pred ---CCceEEEeec---cceeEEEEeccCcceecccccC
Confidence 2345666653 5544445544555666677765
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=169.36 Aligned_cols=229 Identities=18% Similarity=0.233 Sum_probs=163.8
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCc-eEEEEEECCCCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSK-LRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~-~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
.++++.|- || -..+.++. ....+..|.|||||+.|+|..-.. +. .++|++++++++..++......
T Consensus 173 ~~l~~~D~--dg--~~~~~l~~--~~~~~~~p~ws~~~~~~~y~~f~~------~~~~~i~~~~l~~g~~~~i~~~~g~- 239 (425)
T COG0823 173 YELALGDY--DG--YNQQKLTD--SGSLILTPAWSPDGKKLAYVSFEL------GGCPRIYYLDLNTGKRPVILNFNGN- 239 (425)
T ss_pred ceEEEEcc--CC--cceeEecc--cCcceeccccCcCCCceEEEEEec------CCCceEEEEeccCCccceeeccCCc-
Confidence 46777654 33 33444442 233678899999999999986422 23 7999999999888777665443
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
-..++|||||++|+|+... | +..+||++|+
T Consensus 240 ----~~~P~fspDG~~l~f~~~r---------------------------------------d-------g~~~iy~~dl 269 (425)
T COG0823 240 ----NGAPAFSPDGSKLAFSSSR---------------------------------------D-------GSPDIYLMDL 269 (425)
T ss_pred ----cCCccCCCCCCEEEEEECC---------------------------------------C-------CCccEEEEcC
Confidence 3589999999999998211 1 4457999999
Q ss_pred -CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCcccccccc
Q 002194 322 -DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (954)
Q Consensus 322 -~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~ 399 (954)
++..++|++. +...++.|||||++|+|++++.. ..+|++++.+|+..++++......
T Consensus 270 ~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G----------~p~I~~~~~~g~~~~riT~~~~~~----------- 328 (425)
T COG0823 270 DGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG----------RPQIYLYDLEGSQVTRLTFSGGGN----------- 328 (425)
T ss_pred CCCcceecccCCccccCccCCCCCCEEEEEeCCCC----------CcceEEECCCCCceeEeeccCCCC-----------
Confidence 6677778887 77779999999999999986643 228999999999988888754322
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEecccc
Q 002194 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR 479 (954)
Q Consensus 400 g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (954)
..+.|||||++|+|.. ..++ .-.+...++ .++...+.+ ........++|+++|+.|.|.+...+
T Consensus 329 --~~p~~SpdG~~i~~~~--~~~g--------~~~i~~~~~--~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~~- 392 (425)
T COG0823 329 --SNPVWSPDGDKIVFES--SSGG--------QWDIDKNDL--ASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSGQGG- 392 (425)
T ss_pred --cCccCCCCCCEEEEEe--ccCC--------ceeeEEecc--CCCCcEEEc-cccccCCCCCcCCCCceEEEeccCCC-
Confidence 2577999999999983 1111 124555553 333334444 44445678999999999999987653
Q ss_pred ceEEEEEcCCCC
Q 002194 480 RTRTWVISPGSK 491 (954)
Q Consensus 480 ~~~l~~~d~~~~ 491 (954)
...|+.++.++.
T Consensus 393 ~~~l~~~s~~g~ 404 (425)
T COG0823 393 GSVLSLVSLDGR 404 (425)
T ss_pred CceEEEeeccce
Confidence 467888887763
|
|
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-15 Score=177.67 Aligned_cols=194 Identities=20% Similarity=0.217 Sum_probs=145.7
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHHHHHHcC--CCC------------CCcEEEEeeC
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVVRRG--VAH------------PSKIAVGGHS 767 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~~l~~~~--~~d------------~~ri~l~G~S 767 (954)
.+..+|+.+||+|+. .+.+|.|.|.+.. .+...+.+|..++|+||..+. +.| ..+|+++|.|
T Consensus 270 ~~~~~~~~rGYaVV~---~D~RGtg~SeG~~~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~S 346 (767)
T PRK05371 270 SLNDYFLPRGFAVVY---VSGIGTRGSDGCPTTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKS 346 (767)
T ss_pred hHHHHHHhCCeEEEE---EcCCCCCCCCCcCccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEc
Confidence 456789999999999 5566666666542 334778999999999998642 233 4799999999
Q ss_pred hHHHHHHHHHHhCCCcccEEEEeccCCCCCCC--C-------CCCcccc---------------------chhhh-----
Q 002194 768 YGAFMTANLLAHAPHLFCCGIARSGAYNRTLT--P-------FGFQNED---------------------RTLWE----- 812 (954)
Q Consensus 768 ~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~--~-------~~~~~~~---------------------~~~~~----- 812 (954)
|||++++.+|+..|+.++|+|+++++.++... . .++..+. ...++
T Consensus 347 Y~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~~ 426 (767)
T PRK05371 347 YLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLAE 426 (767)
T ss_pred HHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHhh
Confidence 99999999999988999999999988764211 0 0110000 00000
Q ss_pred -----------cHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcc
Q 002194 813 -----------ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (954)
Q Consensus 813 -----------~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (954)
..+.|...+++.+++++++|+|++||..|.+|+ +.++.++|++|+..++++++.+.++ +|......
T Consensus 427 ~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~--~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~~ 503 (767)
T PRK05371 427 LTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVK--PKQVYQWWDALPENGVPKKLFLHQG-GHVYPNNW 503 (767)
T ss_pred hhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCC--hHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCch
Confidence 011234456777888999999999999999998 8999999999999999999988776 78764444
Q ss_pred cHHHHHHHHHHHHHHhcccCC
Q 002194 882 SIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 882 ~~~~~~~~i~~fl~~~l~~~~ 902 (954)
...++.+.+++||++||+...
T Consensus 504 ~~~d~~e~~~~Wfd~~LkG~~ 524 (767)
T PRK05371 504 QSIDFRDTMNAWFTHKLLGID 524 (767)
T ss_pred hHHHHHHHHHHHHHhccccCC
Confidence 556788899999999998643
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.9e-15 Score=151.21 Aligned_cols=128 Identities=22% Similarity=0.150 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHH
Q 002194 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYV 818 (954)
Q Consensus 739 ~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (954)
....+.+.++++.++..+++++|+++|+|+||.+++.++.+.|+.++++|+.++.+.. ..
T Consensus 83 ~~~~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~------~~-------------- 142 (232)
T PRK11460 83 IMPTFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYAS------LP-------------- 142 (232)
T ss_pred HHHHHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccccc------cc--------------
Confidence 3455666777777777788899999999999999999999998888888887763210 00
Q ss_pred hcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 819 EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 819 ~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
.....++|+|++||++|.+|| ++.+++++++|+..|.++++++||+++|.+. .+..+.+.+||.+.+
T Consensus 143 ------~~~~~~~pvli~hG~~D~vvp--~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~-----~~~~~~~~~~l~~~l 209 (232)
T PRK11460 143 ------ETAPTATTIHLIHGGEDPVID--VAHAVAAQEALISLGGDVTLDIVEDLGHAID-----PRLMQFALDRLRYTV 209 (232)
T ss_pred ------ccccCCCcEEEEecCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCCCC-----HHHHHHHHHHHHHHc
Confidence 001246899999999999999 9999999999999999999999999999985 355677888888877
Q ss_pred c
Q 002194 899 V 899 (954)
Q Consensus 899 ~ 899 (954)
.
T Consensus 210 ~ 210 (232)
T PRK11460 210 P 210 (232)
T ss_pred c
Confidence 4
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-13 Score=146.13 Aligned_cols=328 Identities=13% Similarity=0.147 Sum_probs=166.5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
+-....|.+||++|+|.++ .++..+||++|+++++.+|||..+... .....++|+++.|+|..
T Consensus 37 YF~~~~ft~dG~kllF~s~------~dg~~nly~lDL~t~~i~QLTdg~g~~----~~g~~~s~~~~~~~Yv~------- 99 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASD------FDGNRNLYLLDLATGEITQLTDGPGDN----TFGGFLSPDDRALYYVK------- 99 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-------TTSS-EEEEEETTT-EEEE---SS-B-----TTT-EE-TTSSEEEEEE-------
T ss_pred eecCCCcCCCCCEEEEEec------cCCCcceEEEEcccCEEEECccCCCCC----ccceEEecCCCeEEEEE-------
Confidence 5567899999999999764 568999999999999999999977532 22567889999988761
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC----ccccccccCCCCc
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----AVYTSLDPSPDEK 344 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~----~~~~~~~~SpDGk 344 (954)
...+|+.+|+ +++.+.|..- ..+.......|++
T Consensus 100 ------------------------------------------~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t 137 (386)
T PF14583_consen 100 ------------------------------------------NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCT 137 (386)
T ss_dssp ------------------------------------------TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSS
T ss_pred ------------------------------------------CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCcc
Confidence 1235899999 8877666543 2223344466899
Q ss_pred EEEEEeecCCcccccc---------cCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 345 YILISSIHRPYSFIVP---------CGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~---------~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
.++.....+..-...+ ..+-...|+.+|+.+++.+.+.... .....+.|||....++-
T Consensus 138 ~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-------------~wlgH~~fsP~dp~li~ 204 (386)
T PF14583_consen 138 KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-------------DWLGHVQFSPTDPTLIM 204 (386)
T ss_dssp EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-------------S-EEEEEEETTEEEEEE
T ss_pred EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-------------ccccCcccCCCCCCEEE
Confidence 8887654432111111 1234457888899988887776532 12246788885554444
Q ss_pred EEEeccCCCccccccC-CCeEEEEecCCCCCCCceEEeec--ccccCceeeccCCceEEEEEeccc-cceEEEEEcCCCC
Q 002194 416 WAETQDGGDAKVEVTP-RDIIYTQQAEPVQGEGPEILHKL--DLRYGGISWCDDSLALVYESWYKT-RRTRTWVISPGSK 491 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~g~~~~~l~~~--~~~~~~~~~spDg~~l~~~~~~~~-~~~~l~~~d~~~~ 491 (954)
+...... .. ..+||+++. +|+..+.+... ...+..--|+|||..|+|.....+ ...-|+.++++++
T Consensus 205 fCHEGpw-------~~Vd~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 205 FCHEGPW-------DLVDQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG 274 (386)
T ss_dssp EEE-S-T-------TTSS-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-
T ss_pred EeccCCc-------ceeceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC
Confidence 4332211 11 237999996 77776666332 222344689999999999776333 3456888999886
Q ss_pred CCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccC
Q 002194 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 492 ~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
+.+.+...+...- +.-++||++++=-. .+.+.. + -...+..- .+.+.||+++++++..+.|...+
T Consensus 275 --~~~~~~~~p~~~H--------~~ss~Dg~L~vGDG--~d~p~~-v-~~~~~~~~-~~~p~i~~~~~~~~~~~~l~~h~ 339 (386)
T PF14583_consen 275 --ERRRLMEMPWCSH--------FMSSPDGKLFVGDG--GDAPVD-V-ADAGGYKI-ENDPWIYLFDVEAGRFRKLARHD 339 (386)
T ss_dssp ---EEEEEEE-SEEE--------EEE-TTSSEEEEEE------------------------EEEEEETTTTEEEEEEE--
T ss_pred --CceEEEeCCceee--------eEEcCCCCEEEecC--CCCCcc-c-ccccccee-cCCcEEEEeccccCceeeeeecc
Confidence 3344433332111 44689998664332 111100 0 00011111 24578999999999888776654
Q ss_pred cccccceeEE--eccCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002194 572 KEKYYETTVA--LMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (954)
Q Consensus 572 ~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~ 618 (954)
.. + .+.. --.....++|||||++++|+..- ..++.||.++++.
T Consensus 340 ~s-w--~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i~~ 384 (386)
T PF14583_consen 340 TS-W--KVLDGDRQVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVEIPD 384 (386)
T ss_dssp --------BTTBSSTT----EE-TTSSEEEEEE-T-TSS-EEEEEE--C
T ss_pred Cc-c--eeecCCCccCCCCCccCCCCCEEEEECCC-CCCccEEEEeCcc
Confidence 11 0 0000 00123458999999999987665 4468899988653
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-13 Score=143.02 Aligned_cols=171 Identities=11% Similarity=0.055 Sum_probs=122.0
Q ss_pred ccccccceEEEEEe-CCceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCC
Q 002194 308 FDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL 386 (954)
Q Consensus 308 ~~~~~~~~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~ 386 (954)
.....+++.++++. +|-..++...+++.-..++-|++.++....++. .+.+++.+|++.+++...-
T Consensus 335 ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD------------~l~iyd~~~~e~kr~e~~l- 401 (668)
T COG4946 335 IALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGD------------KLGIYDKDGGEVKRIEKDL- 401 (668)
T ss_pred EEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCc------------eEEEEecCCceEEEeeCCc-
Confidence 33336677888888 777778877766666677778887777664432 7889999999988776532
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-ccccCceeecc
Q 002194 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCD 465 (954)
Q Consensus 387 ~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~sp 465 (954)
+.+.++..|||||.++.. ..+..||++++ +++.++.+... .+-+..+.|+|
T Consensus 402 ------------g~I~av~vs~dGK~~vva-------------Ndr~el~vidi---dngnv~~idkS~~~lItdf~~~~ 453 (668)
T COG4946 402 ------------GNIEAVKVSPDGKKVVVA-------------NDRFELWVIDI---DNGNVRLIDKSEYGLITDFDWHP 453 (668)
T ss_pred ------------cceEEEEEcCCCcEEEEE-------------cCceEEEEEEe---cCCCeeEecccccceeEEEEEcC
Confidence 345678899999988877 45678999997 77788777544 44567899999
Q ss_pred CCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
++++|+|+-...=-...|.+.|++++ +...+|.....+ .+ ++|.|||++|+|.+
T Consensus 454 nsr~iAYafP~gy~tq~Iklydm~~~--Kiy~vTT~ta~D-----fs--PaFD~d~ryLYfLs 507 (668)
T COG4946 454 NSRWIAYAFPEGYYTQSIKLYDMDGG--KIYDVTTPTAYD-----FS--PAFDPDGRYLYFLS 507 (668)
T ss_pred CceeEEEecCcceeeeeEEEEecCCC--eEEEecCCcccc-----cC--cccCCCCcEEEEEe
Confidence 99999998654322245677777774 333444433332 22 56999999999987
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-14 Score=153.02 Aligned_cols=230 Identities=19% Similarity=0.175 Sum_probs=158.8
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (954)
.+-.+.+.||..+....+.+... +..+||++||.. .+...+...+..|..+||.|+.
T Consensus 10 ~~~~~~~~d~~~~~~~~~~~~~~------~~g~Vvl~HG~~---------------Eh~~ry~~la~~l~~~G~~V~~-- 66 (298)
T COG2267 10 TEGYFTGADGTRLRYRTWAAPEP------PKGVVVLVHGLG---------------EHSGRYEELADDLAARGFDVYA-- 66 (298)
T ss_pred ccceeecCCCceEEEEeecCCCC------CCcEEEEecCch---------------HHHHHHHHHHHHHHhCCCEEEE--
Confidence 44567778999999999887631 137899999952 2333334567788999999999
Q ss_pred CCCCCCCCCcc-cc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 720 TTPIIGEGDEE-AN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 720 ~~~~~G~G~~~-~~---~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
+|.+|+|.+. .. ...+...+.|+.+.++.+... .-..+++++||||||.+++.++.+++..++++|+.+|++.
T Consensus 67 -~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~ 143 (298)
T COG2267 67 -LDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALG 143 (298)
T ss_pred -ecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECcccc
Confidence 8888999886 32 122456677777777777654 1235899999999999999999999999999999999876
Q ss_pred CCC--C-----------------CCCCcc----ccchhh--hcH---HHHHhcCc-----------------------cc
Q 002194 796 RTL--T-----------------PFGFQN----EDRTLW--EAT---STYVEMSP-----------------------FM 824 (954)
Q Consensus 796 ~~~--~-----------------~~~~~~----~~~~~~--~~~---~~~~~~sp-----------------------~~ 824 (954)
... . .+.+.. ....-| .++ +.|. .+| ..
T Consensus 144 l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~-~dP~~~~~~~~~~w~~~~~~a~~~~~~~ 222 (298)
T COG2267 144 LGGAILRLILARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYE-ADPLIGVGGPVSRWVDLALLAGRVPALR 222 (298)
T ss_pred CChhHHHHHHHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHh-cCCccccCCccHHHHHHHHHhhcccchh
Confidence 541 0 011111 000000 001 1111 122 11
Q ss_pred ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccH--HHHHHHHHHHHHHhcc
Q 002194 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI--MHVLWETDRWLQKYCV 899 (954)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~--~~~~~~i~~fl~~~l~ 899 (954)
...+++.|+||+||++|.+|+- .+...++++++.... +++.+|+|+.|.+....+. ..+++.+.+||.++..
T Consensus 223 ~~~~~~~PvLll~g~~D~vv~~-~~~~~~~~~~~~~~~--~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 223 DAPAIALPVLLLQGGDDRVVDN-VEGLARFFERAGSPD--KELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred ccccccCCEEEEecCCCccccC-cHHHHHHHHhcCCCC--ceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 2345689999999999999851 255566666554442 6999999999998877777 8899999999998763
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.9e-14 Score=147.17 Aligned_cols=313 Identities=17% Similarity=0.155 Sum_probs=160.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
......|.+||++|+|.+.. +.. .++|++++.+ ++.+|||..+ +.
T Consensus 37 YF~~~~ft~dG~kllF~s~~--------------------dg~----------~nly~lDL~t----~~i~QLTdg~-g~ 81 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASDF--------------------DGN----------RNLYLLDLAT----GEITQLTDGP-GD 81 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-T--------------------TSS-----------EEEEEETTT-----EEEE---SS--B
T ss_pred eecCCCcCCCCCEEEEEecc--------------------CCC----------cceEEEEccc----CEEEECccCC-CC
Confidence 45577899999999998873 111 3899999966 7888888543 22
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEe--cCCeEEEEEecCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV--NNSTLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~ws--pDG~~l~~~~~~~~~ 267 (954)
......+||+++.|+|.+. ..+|+.+|+++.+.+.+...+... .....|+ .|++.++........
T Consensus 82 ~~~g~~~s~~~~~~~Yv~~---------~~~l~~vdL~T~e~~~vy~~p~~~----~g~gt~v~n~d~t~~~g~e~~~~d 148 (386)
T PF14583_consen 82 NTFGGFLSPDDRALYYVKN---------GRSLRRVDLDTLEERVVYEVPDDW----KGYGTWVANSDCTKLVGIEISRED 148 (386)
T ss_dssp -TTT-EE-TTSSEEEEEET---------TTEEEEEETTT--EEEEEE--TTE----EEEEEEEE-TTSSEEEEEEEEGGG
T ss_pred CccceEEecCCCeEEEEEC---------CCeEEEEECCcCcEEEEEECCccc----ccccceeeCCCccEEEEEEEeehh
Confidence 3456789999999999763 468999999999999998888753 3356775 567777755110000
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCC-CCc
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSP-DEK 344 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~Sp-DGk 344 (954)
. ..+-....-...+.-.-...|+.+++ +|+.+.+... .....+.+|| |..
T Consensus 149 ~---------------------------~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~ 201 (386)
T PF14583_consen 149 W---------------------------KPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT 201 (386)
T ss_dssp --------------------------------SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred c---------------------------cCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence 0 00000000001111113467999999 9988887765 6667888998 566
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
.|+|.- ..| +...+..||+.+.+|+..+.+...... ..+..--|+|||+.|.|......+
T Consensus 202 li~fCH-EGp------w~~Vd~RiW~i~~dg~~~~~v~~~~~~-----------e~~gHEfw~~DG~~i~y~~~~~~~-- 261 (386)
T PF14583_consen 202 LIMFCH-EGP------WDLVDQRIWTINTDGSNVKKVHRRMEG-----------ESVGHEFWVPDGSTIWYDSYTPGG-- 261 (386)
T ss_dssp EEEEEE--S-------TTTSS-SEEEEETTS---EESS---TT-----------EEEEEEEE-TTSS-EEEEEEETTT--
T ss_pred EEEEec-cCC------cceeceEEEEEEcCCCcceeeecCCCC-----------cccccccccCCCCEEEEEeecCCC--
Confidence 777765 333 334456899999999988887654321 122345699999999986332211
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccc------------cceEEEEEcCCCCC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT------------RRTRTWVISPGSKD 492 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~------------~~~~l~~~d~~~~~ 492 (954)
...-|+-++. .+++.+.+...++ ...+--++||+.+|=-..+.. ...-||++++..+
T Consensus 262 ------~~~~i~~~d~---~t~~~~~~~~~p~-~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~- 330 (386)
T PF14583_consen 262 ------QDFWIAGYDP---DTGERRRLMEMPW-CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG- 330 (386)
T ss_dssp --------EEEEEE-T---TT--EEEEEEE-S-EEEEEE-TTSSEEEEEE-------------------EEEEEETTTT-
T ss_pred ------CceEEEeeCC---CCCCceEEEeCCc-eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC-
Confidence 1123455553 4455556654443 334555789887654332110 1135778888775
Q ss_pred CCcEEEecCC--CCCcc--CCCCCCCeeeccCCcEEEEEEe
Q 002194 493 VAPRILFDRS--SEDVY--SDPGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 493 ~~~~~l~~~~--~~~~~--~~~~~~~~~~spdG~~l~~~~~ 529 (954)
....+.... ..... -+...|-++|||||++|+|.+.
T Consensus 331 -~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 331 -RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp -EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred -ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence 223332221 11111 1224566899999999999983
|
|
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=151.93 Aligned_cols=227 Identities=15% Similarity=0.091 Sum_probs=156.5
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH-HCCcEEEEcCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIG 725 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~G 725 (954)
.....+..+||+|....+.. +.|+|||+|||.|..+.... ..++.+...++ +.+..|+.++|
T Consensus 69 ~~~~~l~vRly~P~~~~~~~--~~p~lvyfHGGGf~~~S~~~----------~~y~~~~~~~a~~~~~vvvSVdY----- 131 (336)
T KOG1515|consen 69 DPFTNLPVRLYRPTSSSSET--KLPVLVYFHGGGFCLGSANS----------PAYDSFCTRLAAELNCVVVSVDY----- 131 (336)
T ss_pred cCCCCeEEEEEcCCCCCccc--CceEEEEEeCCccEeCCCCC----------chhHHHHHHHHHHcCeEEEecCc-----
Confidence 34456899999998754422 38999999999765543221 22334555554 57999999777
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEeeChHHHHHHHHHHhC------CCcccEEEEeccCCC
Q 002194 726 EGDEEANDRFVEQLVACAEAAVEEVVRR----GVAHPSKIAVGGHSYGAFMTANLLAHA------PHLFCCGIARSGAYN 795 (954)
Q Consensus 726 ~G~~~~~~~~~~~~~~D~~~av~~l~~~----~~~d~~ri~l~G~S~GG~~a~~~a~~~------p~~~~a~v~~~~~~~ 795 (954)
+.++++.++..++|..+|+.|+.++ ..+|++||+|+|-|+||++|..++.+. +..+++.|++.|++.
T Consensus 132 ---RLAPEh~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~ 208 (336)
T KOG1515|consen 132 ---RLAPEHPFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQ 208 (336)
T ss_pred ---ccCCCCCCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccC
Confidence 5567778899999999999999886 469999999999999999999988643 356899999999876
Q ss_pred CCCC-CCCCc----cccchhhhcHHHHHh--------------cCccccc------CCCCCCEEEEEeCCCCCCCCchHH
Q 002194 796 RTLT-PFGFQ----NEDRTLWEATSTYVE--------------MSPFMSA------NKLKKPILLVHGEEDNNSGTLTMQ 850 (954)
Q Consensus 796 ~~~~-~~~~~----~~~~~~~~~~~~~~~--------------~sp~~~~------~~~~~P~Lii~G~~D~~v~~~~~~ 850 (954)
.... .-.++ ......+...+.++. .+|..+. ...-.|+||+.++.|.. .++
T Consensus 209 ~~~~~~~e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L----~D~ 284 (336)
T KOG1515|consen 209 GTDRTESEKQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVL----RDE 284 (336)
T ss_pred CCCCCCHHHHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhh----hhh
Confidence 3221 10000 000001111111111 1222210 11124699999999965 689
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCcCCCc----ccHHHHHHHHHHHHHHh
Q 002194 851 SDRFFNALKGHGALCRLVILPFESHGYAAR----ESIMHVLWETDRWLQKY 897 (954)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~fl~~~ 897 (954)
+..+.++|++.|+++++..++++.|++... .......+.+.+|+++.
T Consensus 285 ~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 285 GLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred hHHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999987422 24556777888888764
|
|
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-15 Score=150.17 Aligned_cols=188 Identities=17% Similarity=0.114 Sum_probs=117.4
Q ss_pred EEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcc--c
Q 002194 654 ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE--A 731 (954)
Q Consensus 654 ~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~--~ 731 (954)
+++|+|+++. +++|+||++||++..... +.. ...+...+.+.||+|+.+++++..+.+..+ .
T Consensus 1 ~~ly~P~~~~----~~~P~vv~lHG~~~~~~~-----------~~~-~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~ 64 (212)
T TIGR01840 1 MYVYVPAGLT----GPRALVLALHGCGQTASA-----------YVI-DWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWF 64 (212)
T ss_pred CEEEcCCCCC----CCCCEEEEeCCCCCCHHH-----------Hhh-hcChHHHHHhCCeEEEecCCcCccccCCCCCCC
Confidence 4789998742 348999999997532111 100 001233445689999997776543221111 0
Q ss_pred -c--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCC-C-Ccc-
Q 002194 732 -N--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF-G-FQN- 805 (954)
Q Consensus 732 -~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~-~-~~~- 805 (954)
. .........|+...++++.++..+|++||+|+|+|+||++++.++.++|++|++++++++..-...... . +..
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~ 144 (212)
T TIGR01840 65 FTHHRARGTGEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSISATPQM 144 (212)
T ss_pred CccccCCCCccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchhhHhhc
Confidence 0 011224567888999999988789999999999999999999999999999999999887532111000 0 000
Q ss_pred -ccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhC
Q 002194 806 -EDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861 (954)
Q Consensus 806 -~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~ 861 (954)
.....-+..+...... ........|++|+||++|.+|| +..+++++++++..
T Consensus 145 ~~~~~~~~~~~~~~~~~--~~~~~~~p~~~i~hG~~D~vVp--~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 145 CTAATAASVCRLVRGMQ--SEYNGPTPIMSVVHGDADYTVL--PGNADEIRDAMLKV 197 (212)
T ss_pred CCCCCHHHHHHHHhccC--CcccCCCCeEEEEEcCCCceeC--cchHHHHHHHHHHh
Confidence 0000000001111110 1112233457899999999999 99999999999876
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-14 Score=155.73 Aligned_cols=223 Identities=20% Similarity=0.223 Sum_probs=151.9
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (954)
...+..+.+.+|.|. .....+.|+|||+|||.|..+. .... .......++..|+.|+.++|+
T Consensus 58 ~~~~~~~~~~~y~p~---~~~~~~~p~vly~HGGg~~~g~--------~~~~---~~~~~~~~~~~g~~vv~vdYr---- 119 (312)
T COG0657 58 GPSGDGVPVRVYRPD---RKAAATAPVVLYLHGGGWVLGS--------LRTH---DALVARLAAAAGAVVVSVDYR---- 119 (312)
T ss_pred CCCCCceeEEEECCC---CCCCCCCcEEEEEeCCeeeecC--------hhhh---HHHHHHHHHHcCCEEEecCCC----
Confidence 345556789999992 1223358999999999654332 2111 123455566799999998884
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhCCC----cccEEEEeccCCCCCC
Q 002194 726 EGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGIARSGAYNRTL 798 (954)
Q Consensus 726 ~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~~~~~~~~ 798 (954)
..++..++..++|+.+++.|+.++. .+|+++|+|+|+|.||++++.++....+ ..++.+.++|.++...
T Consensus 120 ----laPe~~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~ 195 (312)
T COG0657 120 ----LAPEHPFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS 195 (312)
T ss_pred ----CCCCCCCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc
Confidence 3344456788999999999999873 5899999999999999999999876543 4788899999888664
Q ss_pred CCCCCcccc-ch-------h-hhcHHHH---------HhcCccccc--CCCCCCEEEEEeCCCCCCCCchHHHHHHHHHH
Q 002194 799 TPFGFQNED-RT-------L-WEATSTY---------VEMSPFMSA--NKLKKPILLVHGEEDNNSGTLTMQSDRFFNAL 858 (954)
Q Consensus 799 ~~~~~~~~~-~~-------~-~~~~~~~---------~~~sp~~~~--~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l 858 (954)
....+.... .. . |- ...| ...+|+... .. -.|+||++|+.|.+ ..++..+.++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l----~~~~~~~a~~L 269 (312)
T COG0657 196 SAASLPGYGEADLLDAAAILAWF-ADLYLGAAPDREDPEASPLASDDLSG-LPPTLIQTAEFDPL----RDEGEAYAERL 269 (312)
T ss_pred cccchhhcCCccccCHHHHHHHH-HHHhCcCccccCCCccCccccccccC-CCCEEEEecCCCcc----hhHHHHHHHHH
Confidence 110010000 00 0 10 0001 013343322 22 46899999999987 45899999999
Q ss_pred HhCCCcEEEEEeCCCCCcCCCc--ccHHHHHHHHHHHHHH
Q 002194 859 KGHGALCRLVILPFESHGYAAR--ESIMHVLWETDRWLQK 896 (954)
Q Consensus 859 ~~~g~~~~~~~~~~~~H~~~~~--~~~~~~~~~i~~fl~~ 896 (954)
+..|+++++..++++.|.|... ......+.++.+|+..
T Consensus 270 ~~agv~~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 270 RAAGVPVELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred HHcCCeEEEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999988322 2234456677777763
|
|
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=137.47 Aligned_cols=198 Identities=15% Similarity=0.117 Sum_probs=141.7
Q ss_pred cEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcc--cchhhHHHHHHHHHHHHH
Q 002194 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE--ANDRFVEQLVACAEAAVE 748 (954)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~--~~~~~~~~~~~D~~~av~ 748 (954)
-.|+++||.. |++... ....+.|.++||.|.++++ .|+|... .-........+|+.++.+
T Consensus 16 ~AVLllHGFT-----------Gt~~Dv----r~Lgr~L~e~GyTv~aP~y---pGHG~~~e~fl~t~~~DW~~~v~d~Y~ 77 (243)
T COG1647 16 RAVLLLHGFT-----------GTPRDV----RMLGRYLNENGYTVYAPRY---PGHGTLPEDFLKTTPRDWWEDVEDGYR 77 (243)
T ss_pred EEEEEEeccC-----------CCcHHH----HHHHHHHHHCCceEecCCC---CCCCCCHHHHhcCCHHHHHHHHHHHHH
Confidence 6788899953 222111 2467778889999999665 4666542 223334677899999999
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCcc-----------ccchhhhcHHHH
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN-----------EDRTLWEATSTY 817 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 817 (954)
+|.+.++ +.|+++|.||||.+|+.++.+.| .+++|..++..+.......+.. +....-...+.+
T Consensus 78 ~L~~~gy---~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~ 152 (243)
T COG1647 78 DLKEAGY---DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEM 152 (243)
T ss_pred HHHHcCC---CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHH
Confidence 9998875 48999999999999999999997 7888888876552211100000 000000111112
Q ss_pred HhcC----------------cccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcc
Q 002194 818 VEMS----------------PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (954)
Q Consensus 818 ~~~s----------------p~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (954)
..+. ....++.|..|+||+.|.+|+.|| .+.+.-+++.+... +.++.+|++.||.++...
T Consensus 153 ~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~--~~sA~~Iy~~v~s~--~KeL~~~e~SgHVIt~D~ 228 (243)
T COG1647 153 KSYKDTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVP--AESANFIYDHVESD--DKELKWLEGSGHVITLDK 228 (243)
T ss_pred HHhhcchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCC--HHHHHHHHHhccCC--cceeEEEccCCceeecch
Confidence 2222 233567789999999999999999 88888898887654 579999999999999888
Q ss_pred cHHHHHHHHHHHHH
Q 002194 882 SIMHVLWETDRWLQ 895 (954)
Q Consensus 882 ~~~~~~~~i~~fl~ 895 (954)
.++.+.+.++.||+
T Consensus 229 Erd~v~e~V~~FL~ 242 (243)
T COG1647 229 ERDQVEEDVITFLE 242 (243)
T ss_pred hHHHHHHHHHHHhh
Confidence 88999999999986
|
|
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-15 Score=158.42 Aligned_cols=221 Identities=18% Similarity=0.213 Sum_probs=117.9
Q ss_pred cCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccc---cCCCCCCCCcccHHHHHHHH
Q 002194 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQV---RGSPNEFPRIGSTSVLLWLA 710 (954)
Q Consensus 634 ~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~---~~~~~~~~~~~~~~~~~la~ 710 (954)
...+..|++.|...++..+++++++|++. ++|.|.||++||.....-...+.. ......+..........||.
T Consensus 83 rdGY~~EKv~f~~~p~~~vpaylLvPd~~----~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk 158 (390)
T PF12715_consen 83 RDGYTREKVEFNTTPGSRVPAYLLVPDGA----KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAK 158 (390)
T ss_dssp ETTEEEEEEEE--STTB-EEEEEEEETT------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHT
T ss_pred cCCeEEEEEEEEccCCeeEEEEEEecCCC----CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHh
Confidence 45567899999999999999999999874 567999999999632211100000 00001122223346788999
Q ss_pred CCcEEEEcCCCCCCCCCCccc----------------------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeCh
Q 002194 711 RGFAILGGPTTPIIGEGDEEA----------------------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSY 768 (954)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~----------------------~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~ 768 (954)
+||+|++++.. |+|++.. ...+......|.+.+++||.+++.||++||+++|+||
T Consensus 159 ~GYVvla~D~~---g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSm 235 (390)
T PF12715_consen 159 RGYVVLAPDAL---GFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSM 235 (390)
T ss_dssp TTSEEEEE--T---TSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGG
T ss_pred CCCEEEEEccc---cccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecc
Confidence 99999995543 4443311 0122233467788899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcccEEEEeccCCCCC-----CCC------CCCcc----ccchhhhcHHHHHhcCcccccCCCCCCE
Q 002194 769 GAFMTANLLAHAPHLFCCGIARSGAYNRT-----LTP------FGFQN----EDRTLWEATSTYVEMSPFMSANKLKKPI 833 (954)
Q Consensus 769 GG~~a~~~a~~~p~~~~a~v~~~~~~~~~-----~~~------~~~~~----~~~~~~~~~~~~~~~sp~~~~~~~~~P~ 833 (954)
||+.++++++.+ ++++|+|+.+-+.... ++. .++.. --..+|...+...-.+ --...|+
T Consensus 236 Gg~~a~~LaALD-dRIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~D~PdIas-----liAPRPl 309 (390)
T PF12715_consen 236 GGYRAWWLAALD-DRIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYFDFPDIAS-----LIAPRPL 309 (390)
T ss_dssp GHHHHHHHHHH--TT--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC--HHHHHH-----TTTTS-E
T ss_pred cHHHHHHHHHcc-hhhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhCccHHHHH-----HhCCCcc
Confidence 999999999999 7899988776442210 000 00000 0001111111000000 1125799
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC
Q 002194 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (954)
Q Consensus 834 Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 872 (954)
|++.|..|..+| . .++.|+.. .++.+++++.||+
T Consensus 310 l~~nG~~Dklf~--i--V~~AY~~~-~~p~n~~~~~~p~ 343 (390)
T PF12715_consen 310 LFENGGKDKLFP--I--VRRAYAIM-GAPDNFQIHHYPK 343 (390)
T ss_dssp EESS-B-HHHHH--H--HHHHHHHT-T-GGGEEE---GG
T ss_pred hhhcCCcccccH--H--HHHHHHhc-CCCcceEEeeccc
Confidence 999999998765 3 34444433 3345789999986
|
|
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-15 Score=146.33 Aligned_cols=183 Identities=21% Similarity=0.310 Sum_probs=125.6
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH--HCCcEEEEcCCCCC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL--ARGFAILGGPTTPI 723 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la--~~G~~V~~~~~~~~ 723 (954)
...|.++...+|.|+++.+.+|+ +|+||++||+.+.+.+..-++..+ .+ +..|+ +.++-|+++.+-..
T Consensus 168 ~~tgneLkYrly~Pkdy~pdkky-~PLvlfLHgagq~g~dn~~~l~sg------~g---aiawa~pedqcfVlAPQy~~i 237 (387)
T COG4099 168 ESTGNELKYRLYTPKDYAPDKKY-YPLVLFLHGAGQGGSDNDKVLSSG------IG---AIAWAGPEDQCFVLAPQYNPI 237 (387)
T ss_pred cccCceeeEEEecccccCCCCcc-ccEEEEEecCCCCCchhhhhhhcC------cc---ceeeecccCceEEEccccccc
Confidence 34678999999999999988863 499999999865443322222211 11 11222 23456666554221
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHH-HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCC
Q 002194 724 IGEGDEEANDRFVEQLVACAEAAVE-EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 802 (954)
Q Consensus 724 ~G~G~~~~~~~~~~~~~~D~~~av~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~ 802 (954)
..-.++ ....+ .......++ -|.+++.||.+||.++|.|+||+++..++.+.|+.|+|++.++|--|.
T Consensus 238 f~d~e~-~t~~~----l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~------ 306 (387)
T COG4099 238 FADSEE-KTLLY----LIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR------ 306 (387)
T ss_pred cccccc-ccchh----HHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch------
Confidence 110001 11111 112223333 577788999999999999999999999999999999999999985331
Q ss_pred CccccchhhhcHHHHHhcCcccccCCC-CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC
Q 002194 803 FQNEDRTLWEATSTYVEMSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP 871 (954)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~sp~~~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~ 871 (954)
...++.+ +.|+.++|+.+|.++| .++++-+++.|+..+.++++..|.
T Consensus 307 --------------------v~lv~~lk~~piWvfhs~dDkv~P--v~nSrv~y~~lk~~~~kv~Ytaf~ 354 (387)
T COG4099 307 --------------------VYLVRTLKKAPIWVFHSSDDKVIP--VSNSRVLYERLKALDRKVNYTAFL 354 (387)
T ss_pred --------------------hhhhhhhccCceEEEEecCCCccc--cCcceeehHHHHhhccccchhhhh
Confidence 1112222 5799999999999999 999999999999998888877776
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-14 Score=167.11 Aligned_cols=232 Identities=20% Similarity=0.261 Sum_probs=150.8
Q ss_pred EcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCC
Q 002194 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (954)
Q Consensus 645 ~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~ 724 (954)
+..||.+|.+.+|+|++ .++.|+||++||....... ...+.......|+++||+|+. .+.+
T Consensus 2 ~~~DG~~L~~~~~~P~~-----~~~~P~Il~~~gyg~~~~~-----------~~~~~~~~~~~l~~~Gy~vv~---~D~R 62 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAG-----GGPVPVILSRTPYGKDAGL-----------RWGLDKTEPAWFVAQGYAVVI---QDTR 62 (550)
T ss_pred cCCCCCEEEEEEEecCC-----CCCCCEEEEecCCCCchhh-----------ccccccccHHHHHhCCcEEEE---Eecc
Confidence 56799999999999974 2358999999985311000 000111235678999999999 5556
Q ss_pred CCCCcccchhhH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC---C
Q 002194 725 GEGDEEANDRFV-EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---P 800 (954)
Q Consensus 725 G~G~~~~~~~~~-~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---~ 800 (954)
|+|.+....... ....+|+.++++|+.+++..+ .+|+++|+||||.+++.++...|+.++|+|+.+++.+.... .
T Consensus 63 G~g~S~g~~~~~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~~~~~ 141 (550)
T TIGR00976 63 GRGASEGEFDLLGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRDIAFP 141 (550)
T ss_pred ccccCCCceEecCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHhhccC
Confidence 777765532222 568899999999999998776 69999999999999999999998999999999887653210 0
Q ss_pred CCCccc-------------cc--------------hhhh---cHH-------------------------------HHHh
Q 002194 801 FGFQNE-------------DR--------------TLWE---ATS-------------------------------TYVE 819 (954)
Q Consensus 801 ~~~~~~-------------~~--------------~~~~---~~~-------------------------------~~~~ 819 (954)
-.+... .. .... ... .+..
T Consensus 142 g~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 221 (550)
T TIGR00976 142 GALRLDVLLGWWALLATDSMRPRADDRPPRYAAAARLAQSYDDCQTALSHTPRSSVLALDRFIGWWIQVVDDDYDESWVS 221 (550)
T ss_pred CeeccchhHHHHHhhccccccccccccccchHHHHHHhhhhhhHHHHHhcCCccccccccccchhhhhccCCCCChhhcc
Confidence 000000 00 0000 000 0001
Q ss_pred cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCC--------cccHHHHHH--H
Q 002194 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA--------RESIMHVLW--E 889 (954)
Q Consensus 820 ~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~--------~~~~~~~~~--~ 889 (954)
.+....++++++|+|++.|-.|.. ...+.+.|+.+...+ +.++++=|. .|.... ......... +
T Consensus 222 ~~~~~~~~~i~vP~l~~~gw~D~~----~~g~~~~~~~~~~~~-~~~lilGpw-~H~~~~~~~~~~~~g~~~~~~~~~~~ 295 (550)
T TIGR00976 222 ISLWRDLGGSDVPTLVTGGWYDNH----SRGSIRLFLAVHRGG-AQRLVVGPW-THSGLGGRVGDGNYGMAALSWVDEAE 295 (550)
T ss_pred CchhhHhcCCCCCEEEeCcccCCC----CchHHHHHHHHhhcC-CceEEEccC-CCCCcccccCCCccCccccccchhhh
Confidence 122235567899999999999943 467778888887654 567776664 675210 000011112 4
Q ss_pred HHHHHHHhcccCC
Q 002194 890 TDRWLQKYCVSNT 902 (954)
Q Consensus 890 i~~fl~~~l~~~~ 902 (954)
+++||++||+...
T Consensus 296 ~~~wfD~~Lkg~~ 308 (550)
T TIGR00976 296 QLAFFDRHLKGGT 308 (550)
T ss_pred hHHHHHHHhCCCC
Confidence 6899999998643
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=155.15 Aligned_cols=228 Identities=17% Similarity=0.199 Sum_probs=136.1
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCccc-HHHHHHHHCCc
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS-TSVLLWLARGF 713 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~G~ 713 (954)
...+.++++++-. |.+|++++.+|++ .+|.|+||++-|- ..+..-.. .+...|+.+|+
T Consensus 161 ~~~~i~~v~iP~e-g~~I~g~LhlP~~-----~~p~P~VIv~gGl---------------Ds~qeD~~~l~~~~l~~rGi 219 (411)
T PF06500_consen 161 SDYPIEEVEIPFE-GKTIPGYLHLPSG-----EKPYPTVIVCGGL---------------DSLQEDLYRLFRDYLAPRGI 219 (411)
T ss_dssp SSSEEEEEEEEET-TCEEEEEEEESSS-----SS-EEEEEEE--T---------------TS-GGGGHHHHHCCCHHCT-
T ss_pred CCCCcEEEEEeeC-CcEEEEEEEcCCC-----CCCCCEEEEeCCc---------------chhHHHHHHHHHHHHHhCCC
Confidence 3456788888864 5899999999974 4579999987653 11211111 12235788999
Q ss_pred EEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 714 ~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
++++ .+..|.|.+.... .-+..-.-..++++||.+.+++|.+||+++|.|+||++|..+|...+++++|+|+..|+
T Consensus 220 A~Lt---vDmPG~G~s~~~~-l~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~ 295 (411)
T PF06500_consen 220 AMLT---VDMPGQGESPKWP-LTQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAP 295 (411)
T ss_dssp EEEE---E--TTSGGGTTT--S-S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES--
T ss_pred EEEE---EccCCCcccccCC-CCcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCch
Confidence 9999 6667777653211 10111112347899999999999999999999999999999998877899999999987
Q ss_pred CCCCCCCCCCcccc------------chh---hhc-HHHHHhcCccc--cc--CCCCCCEEEEEeCCCCCCCCchHHHHH
Q 002194 794 YNRTLTPFGFQNED------------RTL---WEA-TSTYVEMSPFM--SA--NKLKKPILLVHGEEDNNSGTLTMQSDR 853 (954)
Q Consensus 794 ~~~~~~~~~~~~~~------------~~~---~~~-~~~~~~~sp~~--~~--~~~~~P~Lii~G~~D~~v~~~~~~~~~ 853 (954)
++..+......... +.. ++. ...+..+|... .+ .++.+|+|.+.|++|.++| .++.+-
T Consensus 296 vh~~ft~~~~~~~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P--~eD~~l 373 (411)
T PF06500_consen 296 VHHFFTDPEWQQRVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSP--IEDSRL 373 (411)
T ss_dssp -SCGGH-HHHHTTS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS---HHHHHH
T ss_pred HhhhhccHHHHhcCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCC--HHHHHH
Confidence 65333211100000 000 000 11124455433 23 6678899999999999998 777655
Q ss_pred HHHHHHhCCCcEEEEEeCCCC-CcCCCcccHHHHHHHHHHHHHHhc
Q 002194 854 FFNALKGHGALCRLVILPFES-HGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~-H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
++. .+.+-+...++... |. .....+..+.+||++.|
T Consensus 374 ia~----~s~~gk~~~~~~~~~~~-----gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 374 IAE----SSTDGKALRIPSKPLHM-----GYPQALDEIYKWLEDKL 410 (411)
T ss_dssp HHH----TBTT-EEEEE-SSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHh----cCCCCceeecCCCcccc-----chHHHHHHHHHHHHHhc
Confidence 433 34444555666433 43 23567888999999865
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-14 Score=132.82 Aligned_cols=202 Identities=17% Similarity=0.192 Sum_probs=141.6
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEc
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (954)
+..+-+....|. +.+ .|.|.. ....|+.|.+|..|...+.. .+......+..|.++||+++.
T Consensus 4 ~~~v~i~Gp~G~-le~-~~~~~~-----~~~~~iAli~HPHPl~gGtm----------~nkvv~~la~~l~~~G~atlR- 65 (210)
T COG2945 4 MPTVIINGPAGR-LEG-RYEPAK-----TPAAPIALICHPHPLFGGTM----------NNKVVQTLARALVKRGFATLR- 65 (210)
T ss_pred CCcEEecCCccc-cee-ccCCCC-----CCCCceEEecCCCccccCcc----------CCHHHHHHHHHHHhCCceEEe-
Confidence 344555554442 333 344432 23479999999987654433 233334567778899999999
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC
Q 002194 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (954)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (954)
++++|-|++.+.-+.+-.+.+|+.++++|++++.. +..-..++|+|+|+++++.++.+.|+ ....|++.|..+.
T Consensus 66 --fNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~-- 139 (210)
T COG2945 66 --FNFRGVGRSQGEFDNGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINA-- 139 (210)
T ss_pred --ecccccccccCcccCCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCc--
Confidence 66667777776656667789999999999999842 22235889999999999999999865 6666777776441
Q ss_pred CCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 002194 799 TPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
+. ...+..+..|.|+|+|+.|++|+ .....++.+ +.+.+++..++++|.|.
T Consensus 140 ~d----------------------fs~l~P~P~~~lvi~g~~Ddvv~--l~~~l~~~~-----~~~~~~i~i~~a~HFF~ 190 (210)
T COG2945 140 YD----------------------FSFLAPCPSPGLVIQGDADDVVD--LVAVLKWQE-----SIKITVITIPGADHFFH 190 (210)
T ss_pred hh----------------------hhhccCCCCCceeEecChhhhhc--HHHHHHhhc-----CCCCceEEecCCCceec
Confidence 10 11233456899999999999987 665555544 25678889999999984
Q ss_pred CcccHHHHHHHHHHHHH
Q 002194 879 ARESIMHVLWETDRWLQ 895 (954)
Q Consensus 879 ~~~~~~~~~~~i~~fl~ 895 (954)
.....+.+.+.+|+.
T Consensus 191 --gKl~~l~~~i~~~l~ 205 (210)
T COG2945 191 --GKLIELRDTIADFLE 205 (210)
T ss_pred --ccHHHHHHHHHHHhh
Confidence 345677788888884
|
|
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.3e-14 Score=152.02 Aligned_cols=235 Identities=15% Similarity=0.160 Sum_probs=148.6
Q ss_pred EEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccC-------------CCCCCCCcccHHHHHHHH
Q 002194 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRG-------------SPNEFPRIGSTSVLLWLA 710 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~la~ 710 (954)
+.+.||..|..+.+.|+. +..+|+++||....... .+++. .++++..+...++..|++
T Consensus 2 ~~~~~g~~l~~~~~~~~~-------~kg~v~i~HG~~eh~~~--~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~ 72 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKN-------AIGIIVLIHGLKSHLRL--QFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNK 72 (332)
T ss_pred ccCCCCCeEEEeeeeccC-------CeEEEEEECCCchhhhh--hhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHH
Confidence 466799999999988752 35799999994322110 00000 001121122356788999
Q ss_pred CCcEEEEcCCCCCCCCCCcccc---h---hhHHHHHHHHHHHHHHHHHc------------------CCCCCCcEEEEee
Q 002194 711 RGFAILGGPTTPIIGEGDEEAN---D---RFVEQLVACAEAAVEEVVRR------------------GVAHPSKIAVGGH 766 (954)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~---~---~~~~~~~~D~~~av~~l~~~------------------~~~d~~ri~l~G~ 766 (954)
+||.|+. .+.+|+|.+... . ..+...++|+...++.+.+. .+-...+++|+||
T Consensus 73 ~G~~V~~---~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~Gh 149 (332)
T TIGR01607 73 NGYSVYG---LDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGL 149 (332)
T ss_pred CCCcEEE---ecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeec
Confidence 9999999 777788876532 1 23566778888888887652 1111357999999
Q ss_pred ChHHHHHHHHHHhCCC--------cccEEEEeccCCCCCCC-----------------------C-CCCccccchhh--h
Q 002194 767 SYGAFMTANLLAHAPH--------LFCCGIARSGAYNRTLT-----------------------P-FGFQNEDRTLW--E 812 (954)
Q Consensus 767 S~GG~~a~~~a~~~p~--------~~~a~v~~~~~~~~~~~-----------------------~-~~~~~~~~~~~--~ 812 (954)
||||.+++.++...++ .++++|+.+|++..... + +.........+ .
T Consensus 150 SmGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~ 229 (332)
T TIGR01607 150 SMGGNIALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPY 229 (332)
T ss_pred cCccHHHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChh
Confidence 9999999998865432 58899988876421100 0 00000000000 0
Q ss_pred cHHHHHhcCc----------------------ccccCCC--CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002194 813 ATSTYVEMSP----------------------FMSANKL--KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (954)
Q Consensus 813 ~~~~~~~~sp----------------------~~~~~~~--~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (954)
..+.+ ..+| ...+.++ ++|+|++||++|.+|+ ++.++++++++... ++++.
T Consensus 230 ~~~~~-~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~--~~~~~~~~~~~~~~--~~~l~ 304 (332)
T TIGR01607 230 VNDII-KFDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCS--YEGTVSFYNKLSIS--NKELH 304 (332)
T ss_pred hhhHH-hcCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccC--HHHHHHHHHhccCC--CcEEE
Confidence 00000 0011 1123344 6899999999999998 88888888776543 46888
Q ss_pred EeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 869 ILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 869 ~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+|++++|.+......+++++.+.+||+
T Consensus 305 ~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 305 TLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred EECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 999999999766667889999999985
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=149.24 Aligned_cols=180 Identities=21% Similarity=0.212 Sum_probs=122.4
Q ss_pred EEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 002194 673 LFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVV 751 (954)
Q Consensus 673 vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~ 751 (954)
||++|||.|..+... ....+...+++ .|++|+..+|+- .++..++..++|+.++++|+.
T Consensus 1 v~~~HGGg~~~g~~~------------~~~~~~~~la~~~g~~v~~~~Yrl--------~p~~~~p~~~~D~~~a~~~l~ 60 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKE------------SHWPFAARLAAERGFVVVSIDYRL--------APEAPFPAALEDVKAAYRWLL 60 (211)
T ss_dssp EEEE--STTTSCGTT------------THHHHHHHHHHHHTSEEEEEE-----------TTTSSTTHHHHHHHHHHHHHH
T ss_pred CEEECCcccccCChH------------HHHHHHHHHHhhccEEEEEeeccc--------cccccccccccccccceeeec
Confidence 789999976544321 12345666675 999999988843 344456789999999999999
Q ss_pred Hc---CCCCCCcEEEEeeChHHHHHHHHHHhCCC----cccEEEEeccCCCC-CCCCCCC------cc-----cc--chh
Q 002194 752 RR---GVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGIARSGAYNR-TLTPFGF------QN-----ED--RTL 810 (954)
Q Consensus 752 ~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~~~~~~-~~~~~~~------~~-----~~--~~~ 810 (954)
++ ..+|+++|+|+|+|.||.+++.++.+..+ .++++++++|.+|. ......+ .. .. ...
T Consensus 61 ~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (211)
T PF07859_consen 61 KNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWF 140 (211)
T ss_dssp HTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHH
T ss_pred cccccccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhcccccccccccccccccccccccccc
Confidence 97 35789999999999999999999875432 48999999998776 2111100 00 00 000
Q ss_pred hhc-----HHHHHhcCcccccCCC--CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 002194 811 WEA-----TSTYVEMSPFMSANKL--KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (954)
Q Consensus 811 ~~~-----~~~~~~~sp~~~~~~~--~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (954)
++. .......+|+.. ..+ -.|++|++|+.|.. ..++..++++|++.|++++++++++++|.|
T Consensus 141 ~~~~~~~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l----~~~~~~~~~~L~~~gv~v~~~~~~g~~H~f 209 (211)
T PF07859_consen 141 WKLYLPGSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVL----VDDSLRFAEKLKKAGVDVELHVYPGMPHGF 209 (211)
T ss_dssp HHHHHSTGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTT----HHHHHHHHHHHHHTT-EEEEEEETTEETTG
T ss_pred cccccccccccccccccccc-cccccCCCeeeeccccccc----hHHHHHHHHHHHHCCCCEEEEEECCCeEEe
Confidence 110 000112345544 223 24999999999965 678999999999999999999999999986
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-13 Score=144.03 Aligned_cols=229 Identities=16% Similarity=0.143 Sum_probs=143.3
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (954)
+.+.+. .+|..+.++++.|.+- + .+.||++|||+... .+. + ......+..|+++||.|+.
T Consensus 3 ~~~~~~-~~~~~l~g~~~~p~~~---~---~~~vv~i~gg~~~~-------~g~---~-~~~~~la~~l~~~G~~v~~-- 62 (274)
T TIGR03100 3 RALTFS-CEGETLVGVLHIPGAS---H---TTGVLIVVGGPQYR-------VGS---H-RQFVLLARRLAEAGFPVLR-- 62 (274)
T ss_pred eeEEEE-cCCcEEEEEEEcCCCC---C---CCeEEEEeCCcccc-------CCc---h-hHHHHHHHHHHHCCCEEEE--
Confidence 456666 4678899999998641 1 24566667653110 000 0 0112456778899999999
Q ss_pred CCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC
Q 002194 720 TTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (954)
Q Consensus 720 ~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~ 799 (954)
++..|+|.+............|+.++++++.++. ...++|.++|||+||.+++.++... +.++++|+++|.+.....
T Consensus 63 -~Dl~G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~~-~~v~~lil~~p~~~~~~~ 139 (274)
T TIGR03100 63 -FDYRGMGDSEGENLGFEGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPAD-LRVAGLVLLNPWVRTEAA 139 (274)
T ss_pred -eCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhhC-CCccEEEEECCccCCccc
Confidence 6667888875543344567899999999998752 1225799999999999999987664 679999999986432110
Q ss_pred CCC------Cc--cccchhhhc-----------HHHHHh----cCc--------------ccccCCCCCCEEEEEeCCCC
Q 002194 800 PFG------FQ--NEDRTLWEA-----------TSTYVE----MSP--------------FMSANKLKKPILLVHGEEDN 842 (954)
Q Consensus 800 ~~~------~~--~~~~~~~~~-----------~~~~~~----~sp--------------~~~~~~~~~P~Lii~G~~D~ 842 (954)
... +. ......|.. ...+.. ..+ ...+.++++|+|+++|+.|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~ 219 (274)
T TIGR03100 140 QAASRIRHYYLGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDL 219 (274)
T ss_pred chHHHHHHHHHHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcch
Confidence 000 00 000011110 011111 101 01234668999999999997
Q ss_pred CCCCchHH-----HHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 843 NSGTLTMQ-----SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 843 ~v~~~~~~-----~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
..+ ... +.++.+.+.. ..++++.+|+++|.++.......+.+.|.+||+
T Consensus 220 ~~~--~~~~~~~~~~~~~~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 220 TAQ--EFADSVLGEPAWRGALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred hHH--HHHHHhccChhhHHHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 643 111 0222222322 357899999999988777777889999999985
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.4e-14 Score=144.02 Aligned_cols=273 Identities=14% Similarity=0.134 Sum_probs=183.3
Q ss_pred hhcCCCCCCceecCCCCEEEEEecCCCCCccccc---------cccceeeeeeecCCC-C-CCcceeeEeceEEEEccCC
Q 002194 105 IVDAPPLPALSFSPQRDKILFLKRRALPPLEELA---------RPEEKLAGLRIDGKC-N-TRSRMSFYTGIGIHQLFPD 173 (954)
Q Consensus 105 ~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~l~~~~~~ 173 (954)
+-+..++....||+||+.||..+..+...+|... .+..+++.+.+.|.. + ...+.+.++.+.+|+++.+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 3456678889999999999999988777776444 455566788888884 3 4445566688999998431
Q ss_pred CCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEec
Q 002194 174 GKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN 253 (954)
Q Consensus 174 g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp 253 (954)
.....|+++ ...+..++|.|+|++|+..+- +....|| |+.+++...+-.+.... +.+++|.+
T Consensus 252 ---~~l~~l~gH--~~RVs~VafHPsG~~L~Tasf-------D~tWRlW--D~~tk~ElL~QEGHs~~----v~~iaf~~ 313 (459)
T KOG0272|consen 252 ---TPLQDLEGH--LARVSRVAFHPSGKFLGTASF-------DSTWRLW--DLETKSELLLQEGHSKG----VFSIAFQP 313 (459)
T ss_pred ---cchhhhhcc--hhhheeeeecCCCceeeeccc-------ccchhhc--ccccchhhHhhcccccc----cceeEecC
Confidence 122334442 248999999999999998762 2345555 66676655444443333 77999999
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcC-CC
Q 002194 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG-PP 331 (954)
Q Consensus 254 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~-~~ 331 (954)
||..++... .+ ...+| +|+ +|.-..+. ..
T Consensus 314 DGSL~~tGG---------------------lD--------------------------~~~Rv--WDlRtgr~im~L~gH 344 (459)
T KOG0272|consen 314 DGSLAATGG---------------------LD--------------------------SLGRV--WDLRTGRCIMFLAGH 344 (459)
T ss_pred CCceeeccC---------------------cc--------------------------chhhe--eecccCcEEEEeccc
Confidence 999777541 00 12233 366 77544433 33
Q ss_pred -ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 -~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..+.+++|||+|-.||..+.++ .+.|||+..... +...| . +..-+..+.|+|++
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dn-------------t~kVWDLR~r~~--ly~ip------A----H~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDN-------------TCKVWDLRMRSE--LYTIP------A----HSNLVSQVKYSPQE 399 (459)
T ss_pred ccceeeEeECCCceEEeecCCCC-------------cEEEeeeccccc--ceecc------c----ccchhhheEecccC
Confidence 7788999999999999887543 788999986432 22221 1 12334678899955
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEE
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (954)
...+.. .+..+.+-+|.- .+....+.|.+++..+.++..|+||..|+..+.+.+ .+||.
T Consensus 400 g~fL~T------------asyD~t~kiWs~--~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT--~KLW~ 458 (459)
T KOG0272|consen 400 GYFLVT------------ASYDNTVKIWST--RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRT--IKLWR 458 (459)
T ss_pred CeEEEE------------cccCcceeeecC--CCcccchhhcCCccceEEEEeccCCceEEEeccCce--eeecc
Confidence 443333 133445555652 345566788899999999999999999999887765 66763
|
|
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.54 E-value=5e-13 Score=137.16 Aligned_cols=129 Identities=26% Similarity=0.301 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHh
Q 002194 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819 (954)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (954)
.+-+.+.++...+.+ ++++||+++|+|+||.||+.++.++|..++++|+++|..-.... +
T Consensus 87 ~~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~-----------~-------- 146 (216)
T PF02230_consen 87 AERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE-----------L-------- 146 (216)
T ss_dssp HHHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC-----------C--------
T ss_pred HHHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc-----------c--------
Confidence 333444445444444 89999999999999999999999999999999999985421100 0
Q ss_pred cCcccccCC-CCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 820 MSPFMSANK-LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 820 ~sp~~~~~~-~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
...... -++|+|++||+.|.+|| ...+++.++.|+..+.++++..|++.||.+. .+.+..+.+||.+++
T Consensus 147 ---~~~~~~~~~~pi~~~hG~~D~vvp--~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 147 ---EDRPEALAKTPILIIHGDEDPVVP--FEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----PEELRDLREFLEKHI 216 (216)
T ss_dssp ---HCCHCCCCTS-EEEEEETT-SSST--HHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH-
T ss_pred ---cccccccCCCcEEEEecCCCCccc--HHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----HHHHHHHHHHHhhhC
Confidence 000011 16899999999999999 9999999999999999999999999999985 466788999998863
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-11 Score=134.54 Aligned_cols=268 Identities=14% Similarity=0.084 Sum_probs=158.1
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
+.|++|++.+ ++.... +..+..+..+.|+|||+.++.+.. ....|+++|+++++..........
T Consensus 11 ~~v~~~d~~t----~~~~~~--~~~~~~~~~l~~~~dg~~l~~~~~--------~~~~v~~~d~~~~~~~~~~~~~~~-- 74 (300)
T TIGR03866 11 NTISVIDTAT----LEVTRT--FPVGQRPRGITLSKDGKLLYVCAS--------DSDTIQVIDLATGEVIGTLPSGPD-- 74 (300)
T ss_pred CEEEEEECCC----CceEEE--EECCCCCCceEECCCCCEEEEEEC--------CCCeEEEEECCCCcEEEeccCCCC--
Confidence 4788999853 332222 222234667899999998765432 246789999988876543322221
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
...+.|+|||+.++++.. ....|+++|+
T Consensus 75 ---~~~~~~~~~g~~l~~~~~------------------------------------------------~~~~l~~~d~~ 103 (300)
T TIGR03866 75 ---PELFALHPNGKILYIANE------------------------------------------------DDNLVTVIDIE 103 (300)
T ss_pred ---ccEEEECCCCCEEEEEcC------------------------------------------------CCCeEEEEECC
Confidence 346889999998876510 1235778888
Q ss_pred CCce-eEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTV-KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~-~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
+++. ..+........+.|+|||+++++..... ..+.+||.++.+........ ..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~------------~~~~~~d~~~~~~~~~~~~~-------------~~ 158 (300)
T TIGR03866 104 TRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT------------NMAHFIDTKTYEIVDNVLVD-------------QR 158 (300)
T ss_pred CCeEEeEeeCCCCcceEEECCCCCEEEEEecCC------------CeEEEEeCCCCeEEEEEEcC-------------CC
Confidence 5432 3332223456789999999999876432 14556787755432211110 12
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCC-ceEEeec-------ccccCceeeccCCceEEE
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKL-------DLRYGGISWCDDSLALVY 472 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~-------~~~~~~~~~spDg~~l~~ 472 (954)
...++|+|||+.+++.. ...+.+++|++ .+++ .+.+... ......++|+|||+.++.
T Consensus 159 ~~~~~~s~dg~~l~~~~------------~~~~~v~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 159 PRFAEFTADGKELWVSS------------EIGGTVSVIDV---ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred ccEEEECCCCCEEEEEc------------CCCCEEEEEEc---CcceeeeeeeecccccccccCCccceEECCCCCEEEE
Confidence 34688999999765541 12347888886 3333 2333211 112245789999998766
Q ss_pred EEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCC
Q 002194 473 ESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIP 552 (954)
Q Consensus 473 ~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (954)
+...+ .++.++|..++ +...... ....+.. +.|+|||++|+.... ...
T Consensus 224 ~~~~~---~~i~v~d~~~~--~~~~~~~-~~~~~~~------~~~~~~g~~l~~~~~--------------------~~~ 271 (300)
T TIGR03866 224 ALGPA---NRVAVVDAKTY--EVLDYLL-VGQRVWQ------LAFTPDEKYLLTTNG--------------------VSN 271 (300)
T ss_pred EcCCC---CeEEEEECCCC--cEEEEEE-eCCCcce------EEECCCCCEEEEEcC--------------------CCC
Confidence 54332 35777787764 2222111 1111222 789999998876531 123
Q ss_pred eEEEEECCCCCeEEEec
Q 002194 553 FLDLFDINTGSKERIWE 569 (954)
Q Consensus 553 ~l~~~d~~~g~~~~l~~ 569 (954)
.|.+||+++++...-..
T Consensus 272 ~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 272 DVSVIDVAALKVIKSIK 288 (300)
T ss_pred eEEEEECCCCcEEEEEE
Confidence 59999999988644333
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=146.68 Aligned_cols=213 Identities=24% Similarity=0.304 Sum_probs=136.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002194 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (954)
Q Consensus 648 ~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G 727 (954)
||++|.+.+|+| +... .+|+|+||..|+....... ..... ............|+++||+||. .+.+|.|
T Consensus 1 DGv~L~adv~~P-~~~~--~~~~P~il~~tpY~~~~~~-~~~~~----~~~~~~~~~~~~~~~~GY~vV~---~D~RG~g 69 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADG--GGPFPVILTRTPYGKGDQT-ASDLA----GANPGPPSARRPFAERGYAVVV---QDVRGTG 69 (272)
T ss_dssp TS-EEEEEEEEE---TT--SSSEEEEEEEESSTCTC-H-HHHHH----TTCHHSHGGGHHHHHTT-EEEE---EE-TTST
T ss_pred CCCEEEEEEEec-CCCC--CCcccEEEEccCcCCCCCc-ccchh----hhhcccchhHHHHHhCCCEEEE---ECCcccc
Confidence 799999999999 3222 4569999999874211000 00000 0000000011238999999999 6666777
Q ss_pred Ccccchhh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC-C--CCC
Q 002194 728 DEEANDRF-VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-P--FGF 803 (954)
Q Consensus 728 ~~~~~~~~-~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-~--~~~ 803 (954)
.|++.-.. ...+.+|..++|+|+.+++..+ .||+++|.||+|+.++.+|+..|..++|++...+..|.... . -+.
T Consensus 70 ~S~G~~~~~~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~ 148 (272)
T PF02129_consen 70 GSEGEFDPMSPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGA 148 (272)
T ss_dssp TS-S-B-TTSHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTE
T ss_pred cCCCccccCChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCc
Confidence 77765444 6889999999999999997765 69999999999999999999888899999999887774431 0 000
Q ss_pred ccc-cchhh---------------------h-------------------------------cHHHHHhcCcccccCCCC
Q 002194 804 QNE-DRTLW---------------------E-------------------------------ATSTYVEMSPFMSANKLK 830 (954)
Q Consensus 804 ~~~-~~~~~---------------------~-------------------------------~~~~~~~~sp~~~~~~~~ 830 (954)
... ....| . ..+.+.+.++...+.+++
T Consensus 149 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~ 228 (272)
T PF02129_consen 149 FRLGFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKID 228 (272)
T ss_dssp EBCCHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--
T ss_pred ccccchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCC
Confidence 000 00001 0 001122233444568899
Q ss_pred CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC-CcEEEEEeCCCCCc
Q 002194 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHG 876 (954)
Q Consensus 831 ~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~ 876 (954)
+|+|+++|-.|..+ ...+.+.|++|+..+ ++.++++-|. +|.
T Consensus 229 vP~l~v~Gw~D~~~---~~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 229 VPVLIVGGWYDTLF---LRGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp SEEEEEEETTCSST---SHHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred CCEEEecccCCccc---chHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999999999765 478999999999998 7889998886 674
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=131.07 Aligned_cols=145 Identities=23% Similarity=0.251 Sum_probs=105.0
Q ss_pred EEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 002194 672 CLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVV 751 (954)
Q Consensus 672 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~ 751 (954)
+||++||+... ......++..|+++||.|+.+ +..+.|.+.. ..++..+++++.
T Consensus 1 ~vv~~HG~~~~---------------~~~~~~~~~~l~~~G~~v~~~---~~~~~~~~~~--------~~~~~~~~~~~~ 54 (145)
T PF12695_consen 1 VVVLLHGWGGS---------------RRDYQPLAEALAEQGYAVVAF---DYPGHGDSDG--------ADAVERVLADIR 54 (145)
T ss_dssp EEEEECTTTTT---------------THHHHHHHHHHHHTTEEEEEE---SCTTSTTSHH--------SHHHHHHHHHHH
T ss_pred CEEEECCCCCC---------------HHHHHHHHHHHHHCCCEEEEE---ecCCCCccch--------hHHHHHHHHHHH
Confidence 58899996321 011235677889999999994 4455555411 124445555543
Q ss_pred HcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCC
Q 002194 752 RRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKK 831 (954)
Q Consensus 752 ~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 831 (954)
+.. .|+++|+++|||+||.+++.++.+. +.++++|+++|..+ ...+.+.+.
T Consensus 55 ~~~-~~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~---------------------------~~~~~~~~~ 105 (145)
T PF12695_consen 55 AGY-PDPDRIILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD---------------------------SEDLAKIRI 105 (145)
T ss_dssp HHH-CTCCEEEEEEETHHHHHHHHHHHHS-TTESEEEEESESSG---------------------------CHHHTTTTS
T ss_pred hhc-CCCCcEEEEEEccCcHHHHHHhhhc-cceeEEEEecCccc---------------------------hhhhhccCC
Confidence 322 2889999999999999999999998 78999999998200 112335567
Q ss_pred CEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 002194 832 PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876 (954)
Q Consensus 832 P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 876 (954)
|+|+++|++|..++ +++.++++++++ .+.+++++++++|+
T Consensus 106 pv~~i~g~~D~~~~--~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 106 PVLFIHGENDPLVP--PEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp EEEEEEETT-SSSH--HHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred cEEEEEECCCCcCC--HHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 99999999999998 899999999887 45899999999995
|
... |
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.5e-13 Score=141.43 Aligned_cols=194 Identities=14% Similarity=0.171 Sum_probs=124.2
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~a 746 (954)
.|+||++||..... ..| ........+||.|++ .+..|+|.+.... .......+|+.+.
T Consensus 13 ~~~iv~lhG~~~~~-----------~~~-----~~~~~~l~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~ 73 (257)
T TIGR03611 13 APVVVLSSGLGGSG-----------SYW-----APQLDVLTQRFHVVT---YDHRGTGRSPGELPPGYSIAHMADDVLQL 73 (257)
T ss_pred CCEEEEEcCCCcch-----------hHH-----HHHHHHHHhccEEEE---EcCCCCCCCCCCCcccCCHHHHHHHHHHH
Confidence 68899999963211 111 112233457899999 6666777764321 1234445555555
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC-------------CC-----------
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-------------FG----------- 802 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-------------~~----------- 802 (954)
++.+ +..++.++||||||.+++.++.++|+.++++|.+++........ ..
T Consensus 74 i~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (257)
T TIGR03611 74 LDAL------NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALF 147 (257)
T ss_pred HHHh------CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhh
Confidence 5543 34689999999999999999999999999999888743321000 00
Q ss_pred -Cc----cccch-----------h-------hhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHH
Q 002194 803 -FQ----NEDRT-----------L-------WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (954)
Q Consensus 803 -~~----~~~~~-----------~-------~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~ 859 (954)
+. ..... . ......+...+....+.++++|+|+++|++|..+| ++.+.++++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~ 225 (257)
T TIGR03611 148 LYPADWISENAARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVP--YTQSLRLAAALP 225 (257)
T ss_pred hccccHhhccchhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccC--HHHHHHHHHhcC
Confidence 00 00000 0 00001111122334566789999999999999998 888888877654
Q ss_pred hCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 860 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
. .+++.++++||... .++.+.+.+.+.+||+
T Consensus 226 ~----~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 226 N----AQLKLLPYGGHASN-VTDPETFNRALLDFLK 256 (257)
T ss_pred C----ceEEEECCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 3 47888999999874 5667778888888875
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=147.66 Aligned_cols=175 Identities=13% Similarity=0.108 Sum_probs=115.3
Q ss_pred HHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC
Q 002194 705 VLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP 781 (954)
Q Consensus 705 ~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p 781 (954)
...+++.||.|++ .+.+|+|.+.... .......+|+.++++.+ +.+++.++||||||.+++.++.++|
T Consensus 53 ~~~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p 123 (282)
T TIGR03343 53 IGPFVDAGYRVIL---KDSPGFNKSDAVVMDEQRGLVNARAVKGLMDAL------DIEKAHLVGNSMGGATALNFALEYP 123 (282)
T ss_pred HHHHHhCCCEEEE---ECCCCCCCCCCCcCcccccchhHHHHHHHHHHc------CCCCeeEEEECchHHHHHHHHHhCh
Confidence 3456778999999 6667888885431 11112345555554443 4569999999999999999999999
Q ss_pred CcccEEEEeccCCCCC--CCCCC---------------------------Cccc--c----chhhh----cHH---HHHh
Q 002194 782 HLFCCGIARSGAYNRT--LTPFG---------------------------FQNE--D----RTLWE----ATS---TYVE 819 (954)
Q Consensus 782 ~~~~a~v~~~~~~~~~--~~~~~---------------------------~~~~--~----~~~~~----~~~---~~~~ 819 (954)
++++++|++++..... ..... +... . ...|. .+. .+..
T Consensus 124 ~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (282)
T TIGR03343 124 DRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSLITEELLQGRWENIQRQPEHLKNFLI 203 (282)
T ss_pred HhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCcccCcHHHHHhHHHHhhcCHHHHHHHHH
Confidence 9999999988642100 00000 0000 0 00000 000 0100
Q ss_pred ---------cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHH
Q 002194 820 ---------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWET 890 (954)
Q Consensus 820 ---------~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i 890 (954)
.+....+.++++|+|+++|++|..++ ++.++++++.+. ++++++++++||... .+....+.+.+
T Consensus 204 ~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~--~~~~~~~~~~~~----~~~~~~i~~agH~~~-~e~p~~~~~~i 276 (282)
T TIGR03343 204 SSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVP--LDHGLKLLWNMP----DAQLHVFSRCGHWAQ-WEHADAFNRLV 276 (282)
T ss_pred hccccccccchHHHHHhhCCCCEEEEEccCCCcCC--chhHHHHHHhCC----CCEEEEeCCCCcCCc-ccCHHHHHHHH
Confidence 01112356789999999999999998 888888877664 368899999999974 67777888889
Q ss_pred HHHHH
Q 002194 891 DRWLQ 895 (954)
Q Consensus 891 ~~fl~ 895 (954)
.+||.
T Consensus 277 ~~fl~ 281 (282)
T TIGR03343 277 IDFLR 281 (282)
T ss_pred HHHhh
Confidence 99885
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=136.03 Aligned_cols=187 Identities=21% Similarity=0.198 Sum_probs=112.8
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCCCCCCCCc-
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDE- 729 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~- 729 (954)
|...||+|++... ++.|+||++||...... .+... .. ...+++ +||+|+.+...........
T Consensus 1 l~Y~lYvP~~~~~---~~~PLVv~LHG~~~~a~---~~~~~---------s~-~~~lAd~~GfivvyP~~~~~~~~~~cw 64 (220)
T PF10503_consen 1 LSYRLYVPPGAPR---GPVPLVVVLHGCGQSAE---DFAAG---------SG-WNALADREGFIVVYPEQSRRANPQGCW 64 (220)
T ss_pred CcEEEecCCCCCC---CCCCEEEEeCCCCCCHH---HHHhh---------cC-HHHHhhcCCeEEEcccccccCCCCCcc
Confidence 3568999997532 35899999999743221 11110 01 123454 7999998654211100011
Q ss_pred -ccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC-CC-Cc
Q 002194 730 -EAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-FG-FQ 804 (954)
Q Consensus 730 -~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-~~-~~ 804 (954)
+.. ..........+...++++.++..+|++||+++|+|.||+|+..+++.+|++|+|+..++|..-..... .. +.
T Consensus 65 ~w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~~~~a~~ 144 (220)
T PF10503_consen 65 NWFSDDQQRGGGDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAASGASALS 144 (220)
T ss_pred cccccccccCccchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccCcccHHH
Confidence 101 11122345556788899999989999999999999999999999999999999999998753211110 00 00
Q ss_pred --cc--cchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhC
Q 002194 805 --NE--DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861 (954)
Q Consensus 805 --~~--~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~ 861 (954)
.. ...+-.......... ..-..|++|+||+.|.+|. +.++.++.+.+...
T Consensus 145 ~m~~g~~~~p~~~~~a~~~~g-----~~~~~P~~v~hG~~D~tV~--~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 145 AMRSGPRPAPAAAWGARSDAG-----AYPGYPRIVFHGTADTTVN--PQNADQLVAQWLNV 198 (220)
T ss_pred HhhCCCCCChHHHHHhhhhcc-----CCCCCCEEEEecCCCCccC--cchHHHHHHHHHHc
Confidence 00 000000000011110 0113599999999999998 88888888877654
|
|
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.8e-13 Score=143.55 Aligned_cols=225 Identities=15% Similarity=0.167 Sum_probs=134.2
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
....+++...+|..+... |...+ ++ + .|.||++||.+... ..| ...+..|.++||.|++
T Consensus 20 ~~~~~~~~~~~~~~~~i~-y~~~G-~~--~--~~~lvliHG~~~~~-----------~~w----~~~~~~L~~~gy~vi~ 78 (302)
T PRK00870 20 APHYVDVDDGDGGPLRMH-YVDEG-PA--D--GPPVLLLHGEPSWS-----------YLY----RKMIPILAAAGHRVIA 78 (302)
T ss_pred CceeEeecCCCCceEEEE-EEecC-CC--C--CCEEEEECCCCCch-----------hhH----HHHHHHHHhCCCEEEE
Confidence 345566665566544422 22222 11 1 46789999963111 011 1344556678999999
Q ss_pred cCCCCCCCCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 718 GPTTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
.+..|+|.+.... .......+|+.+.++.+ +.+++.++||||||.+++.++.++|++++++|++++.
T Consensus 79 ---~Dl~G~G~S~~~~~~~~~~~~~~a~~l~~~l~~l------~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 149 (302)
T PRK00870 79 ---PDLIGFGRSDKPTRREDYTYARHVEWMRSWFEQL------DLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTG 149 (302)
T ss_pred ---ECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc------CCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCC
Confidence 6777888875422 12344455555444432 3458999999999999999999999999999988753
Q ss_pred CCCCCC-------CCC-Cccc------------cchhh---hcHHHHH----------------h---cCc---------
Q 002194 794 YNRTLT-------PFG-FQNE------------DRTLW---EATSTYV----------------E---MSP--------- 822 (954)
Q Consensus 794 ~~~~~~-------~~~-~~~~------------~~~~~---~~~~~~~----------------~---~sp--------- 822 (954)
...... .+. +... ....+ +....|. . ..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (302)
T PRK00870 150 LPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANR 229 (302)
T ss_pred CCCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHH
Confidence 210000 000 0000 00000 0000000 0 000
Q ss_pred --ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 823 --FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 823 --~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
...+.++++|+|+++|++|..+| ... +++.+.+... ..+++.+++++||... .+..+.+.+.+.+||+++
T Consensus 230 ~~~~~l~~i~~P~lii~G~~D~~~~--~~~-~~~~~~~~~~-~~~~~~~i~~~gH~~~-~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 230 AAWAVLERWDKPFLTAFSDSDPITG--GGD-AILQKRIPGA-AGQPHPTIKGAGHFLQ-EDSGEELAEAVLEFIRAT 301 (302)
T ss_pred HHHHhhhcCCCceEEEecCCCCccc--Cch-HHHHhhcccc-cccceeeecCCCccch-hhChHHHHHHHHHHHhcC
Confidence 01246788999999999999987 654 6666655432 1134778999999974 677788889999998764
|
|
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.5e-13 Score=149.04 Aligned_cols=235 Identities=14% Similarity=0.097 Sum_probs=146.0
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEc
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (954)
.++..+...||..+....+.+...... ...|+||++||....+ ...+.......+.++||.|++
T Consensus 71 ~~re~l~~~DG~~~~ldw~~~~~~~~~--~~~p~vvllHG~~g~s-------------~~~y~~~~~~~~~~~g~~vv~- 134 (388)
T PLN02511 71 YRRECLRTPDGGAVALDWVSGDDRALP--ADAPVLILLPGLTGGS-------------DDSYVRHMLLRARSKGWRVVV- 134 (388)
T ss_pred eeEEEEECCCCCEEEEEecCcccccCC--CCCCEEEEECCCCCCC-------------CCHHHHHHHHHHHHCCCEEEE-
Confidence 445566778988887655443211111 1268999999963110 011111234456789999999
Q ss_pred CCCCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc--ccEEEEeccCC
Q 002194 719 PTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL--FCCGIARSGAY 794 (954)
Q Consensus 719 ~~~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~--~~a~v~~~~~~ 794 (954)
.+.+|+|.+... ..+.....+|+.++++++..+. ...++.++|+||||.+++.+++++|+. +.+++++++..
T Consensus 135 --~d~rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~ 210 (388)
T PLN02511 135 --FNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPF 210 (388)
T ss_pred --EecCCCCCCCCCCcCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCc
Confidence 566677766432 2233455789999999998763 235899999999999999999999876 78888777654
Q ss_pred CCCC------CCC--C----Cc---------------------c-----ccchh--h-----------hc-HHHHHhcCc
Q 002194 795 NRTL------TPF--G----FQ---------------------N-----EDRTL--W-----------EA-TSTYVEMSP 822 (954)
Q Consensus 795 ~~~~------~~~--~----~~---------------------~-----~~~~~--~-----------~~-~~~~~~~sp 822 (954)
+... ..+ . +. . ..... + .. .+.|.+.++
T Consensus 211 ~l~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~ 290 (388)
T PLN02511 211 DLVIADEDFHKGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSS 290 (388)
T ss_pred CHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCc
Confidence 4210 000 0 00 0 00000 0 01 112344556
Q ss_pred ccccCCCCCCEEEEEeCCCCCCCCchHHH-HHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHH------HHHHHHHHHHH
Q 002194 823 FMSANKLKKPILLVHGEEDNNSGTLTMQS-DRFFNALKGHGALCRLVILPFESHGYAARESIM------HVLWETDRWLQ 895 (954)
Q Consensus 823 ~~~~~~~~~P~Lii~G~~D~~v~~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~------~~~~~i~~fl~ 895 (954)
...+.++++|+|+|+|++|+++| .... ..+ .....++++++++++||... .+... -..+.+.+||+
T Consensus 291 ~~~L~~I~vPtLiI~g~dDpi~p--~~~~~~~~----~~~~p~~~l~~~~~gGH~~~-~E~p~~~~~~~w~~~~i~~Fl~ 363 (388)
T PLN02511 291 SDSIKHVRVPLLCIQAANDPIAP--ARGIPRED----IKANPNCLLIVTPSGGHLGW-VAGPEAPFGAPWTDPVVMEFLE 363 (388)
T ss_pred hhhhccCCCCeEEEEcCCCCcCC--cccCcHhH----HhcCCCEEEEECCCcceecc-ccCCCCCCCCccHHHHHHHHHH
Confidence 67788899999999999999987 5433 122 12234579999999999753 22211 24567889998
Q ss_pred Hhccc
Q 002194 896 KYCVS 900 (954)
Q Consensus 896 ~~l~~ 900 (954)
.....
T Consensus 364 ~~~~~ 368 (388)
T PLN02511 364 ALEEG 368 (388)
T ss_pred HHHHh
Confidence 77643
|
|
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-12 Score=127.99 Aligned_cols=130 Identities=23% Similarity=0.218 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHH
Q 002194 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATST 816 (954)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (954)
......+.++++.+.++..+|.+|+++.|+|.|+.+++.++.++|+.++++|+.+|.+-....
T Consensus 77 ~~~~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~----------------- 139 (207)
T COG0400 77 DLETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE----------------- 139 (207)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc-----------------
Confidence 344566677777777777899999999999999999999999999999999999986432110
Q ss_pred HHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 817 YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 817 ~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.....-.+|+|++||+.|++|| ...+.++.+.|+..|.+++...++ +||.+. .+.++.+.+|+.+
T Consensus 140 -------~~~~~~~~pill~hG~~Dpvvp--~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~-----~e~~~~~~~wl~~ 204 (207)
T COG0400 140 -------LLPDLAGTPILLSHGTEDPVVP--LALAEALAEYLTASGADVEVRWHE-GGHEIP-----PEELEAARSWLAN 204 (207)
T ss_pred -------cccccCCCeEEEeccCcCCccC--HHHHHHHHHHHHHcCCCEEEEEec-CCCcCC-----HHHHHHHHHHHHh
Confidence 0011235899999999999999 999999999999999999999999 799985 4556777888877
Q ss_pred hc
Q 002194 897 YC 898 (954)
Q Consensus 897 ~l 898 (954)
.+
T Consensus 205 ~~ 206 (207)
T COG0400 205 TL 206 (207)
T ss_pred cc
Confidence 53
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-12 Score=136.05 Aligned_cols=209 Identities=16% Similarity=0.112 Sum_probs=133.2
Q ss_pred CeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCC
Q 002194 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGD 728 (954)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~ 728 (954)
...+++.+|+|.. .+++|+||++||+... .......+..|+++||.|++++.++..+.+
T Consensus 36 ~~~~p~~v~~P~~-----~g~~PvVv~lHG~~~~---------------~~~y~~l~~~Las~G~~VvapD~~g~~~~~- 94 (313)
T PLN00021 36 SPPKPLLVATPSE-----AGTYPVLLFLHGYLLY---------------NSFYSQLLQHIASHGFIVVAPQLYTLAGPD- 94 (313)
T ss_pred CCCceEEEEeCCC-----CCCCCEEEEECCCCCC---------------cccHHHHHHHHHhCCCEEEEecCCCcCCCC-
Confidence 3468899999964 2459999999996321 111224566788999999997765432211
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHc--------CCCCCCcEEEEeeChHHHHHHHHHHhCCC-----cccEEEEeccCCC
Q 002194 729 EEANDRFVEQLVACAEAAVEEVVRR--------GVAHPSKIAVGGHSYGAFMTANLLAHAPH-----LFCCGIARSGAYN 795 (954)
Q Consensus 729 ~~~~~~~~~~~~~D~~~av~~l~~~--------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~~~~~ 795 (954)
....++|..++++|+.+. ..+|.++++++|||+||.+++.++..+++ +|+++|.+.|+..
T Consensus 95 -------~~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g 167 (313)
T PLN00021 95 -------GTDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDG 167 (313)
T ss_pred -------chhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeeccccc
Confidence 122345666777777652 23677899999999999999999998864 5789998888644
Q ss_pred CCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCC---------CCCCchHHHHHHHHHHHhCCCcEE
Q 002194 796 RTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDN---------NSGTLTMQSDRFFNALKGHGALCR 866 (954)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~---------~v~~~~~~~~~~~~~l~~~g~~~~ 866 (954)
..... ... +..+ .+.+ ...++..|+||+++..|. ..| ...+-.++|+.++. ++.
T Consensus 168 ~~~~~--~~~--------p~il-~~~~--~s~~~~~P~liig~g~~~~~~~~~~p~~ap-~~~~~~~f~~~~~~---~~~ 230 (313)
T PLN00021 168 TSKGK--QTP--------PPVL-TYAP--HSFNLDIPVLVIGTGLGGEPRNPLFPPCAP-DGVNHAEFFNECKA---PAV 230 (313)
T ss_pred ccccc--CCC--------Cccc-ccCc--ccccCCCCeEEEecCCCcccccccccccCC-CCCCHHHHHHhcCC---Cee
Confidence 22110 000 0000 1111 122367999999999763 222 12334778887754 478
Q ss_pred EEEeCCCCCcCCCcc----------------------cHHHHHHHHHHHHHHhcccCC
Q 002194 867 LVILPFESHGYAARE----------------------SIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 867 ~~~~~~~~H~~~~~~----------------------~~~~~~~~i~~fl~~~l~~~~ 902 (954)
+.+.++++|.-.-.+ -++.+...+++||..++....
T Consensus 231 ~~~~~~~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~~~ 288 (313)
T PLN00021 231 HFVAKDYGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEGDT 288 (313)
T ss_pred eeeecCCCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcCch
Confidence 888899999642111 123344568999999986543
|
|
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-12 Score=137.93 Aligned_cols=209 Identities=18% Similarity=0.133 Sum_probs=127.0
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|..+.....-+. ..|+||++||.+... ..| ...... ++++|.|+. .+..|+
T Consensus 13 ~~~~~~~~~~~g~~--------~~~~vv~~hG~~~~~-----------~~~----~~~~~~-l~~~~~vi~---~D~~G~ 65 (278)
T TIGR03056 13 VGPFHWHVQDMGPT--------AGPLLLLLHGTGAST-----------HSW----RDLMPP-LARSFRVVA---PDLPGH 65 (278)
T ss_pred ECCEEEEEEecCCC--------CCCeEEEEcCCCCCH-----------HHH----HHHHHH-HhhCcEEEe---ecCCCC
Confidence 36666664433211 147899999953110 111 122333 456799999 666788
Q ss_pred CCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC----
Q 002194 727 GDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---- 799 (954)
Q Consensus 727 G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---- 799 (954)
|.+..+. .......+|+.++++.+ +.+++.|+||||||.+++.++.+.|++++++|++++.......
T Consensus 66 G~S~~~~~~~~~~~~~~~~l~~~i~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~ 139 (278)
T TIGR03056 66 GFTRAPFRFRFTLPSMAEDLSALCAAE------GLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGT 139 (278)
T ss_pred CCCCCccccCCCHHHHHHHHHHHHHHc------CCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCccccccccccc
Confidence 8775432 22344555555544432 2357899999999999999999999999999988764331100
Q ss_pred --C----------CC-------Ccccc--c-------hhhh--cHHHHH-----------------hcC---cccccCCC
Q 002194 800 --P----------FG-------FQNED--R-------TLWE--ATSTYV-----------------EMS---PFMSANKL 829 (954)
Q Consensus 800 --~----------~~-------~~~~~--~-------~~~~--~~~~~~-----------------~~s---p~~~~~~~ 829 (954)
+ +. ..... . ..+. ....+. .+. ....+.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 219 (278)
T TIGR03056 140 LFPYMARVLACNPFTPPMMSRGAADQQRVERLIRDTGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRI 219 (278)
T ss_pred ccchhhHhhhhcccchHHHHhhcccCcchhHHhhccccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccC
Confidence 0 00 00000 0 0000 000000 000 11235668
Q ss_pred CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
++|+|+++|++|..+| ....+++.+.+.. ++++.++++||.+. .+....+.+.|.+||+
T Consensus 220 ~~P~lii~g~~D~~vp--~~~~~~~~~~~~~----~~~~~~~~~gH~~~-~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 220 TIPLHLIAGEEDKAVP--PDESKRAATRVPT----ATLHVVPGGGHLVH-EEQADGVVGLILQAAE 278 (278)
T ss_pred CCCEEEEEeCCCcccC--HHHHHHHHHhccC----CeEEEECCCCCccc-ccCHHHHHHHHHHHhC
Confidence 8999999999999998 7777777665532 47888999999875 5567788888888873
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-10 Score=120.97 Aligned_cols=136 Identities=15% Similarity=0.229 Sum_probs=83.6
Q ss_pred CCCCCceecCCCCEEEEEecC-----------CCCCccccccccceeeeeeecCCCCCCcceee-EeceEEEEccCCCCC
Q 002194 109 PPLPALSFSPQRDKILFLKRR-----------ALPPLEELARPEEKLAGLRIDGKCNTRSRMSF-YTGIGIHQLFPDGKL 176 (954)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~~~~~~g~~ 176 (954)
.++..++|++||++|+-+... +...+.++...--.+....+.+....+..... +..+-+++
T Consensus 104 G~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe------- 176 (603)
T KOG0318|consen 104 GPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE------- 176 (603)
T ss_pred cccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEee-------
Confidence 367889999999999987654 22334444444444455555444433321111 12222221
Q ss_pred Cceeeeec-C-CCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecC
Q 002194 177 GQEIEIQG-F-PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN 254 (954)
Q Consensus 177 ~~~~~lt~-~-~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD 254 (954)
|++.+... + .+...+..+++||||++.+.+. ....++++|-.+|+..-.... .....+.+-.+.||||
T Consensus 177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g---------sDgki~iyDGktge~vg~l~~-~~aHkGsIfalsWsPD 246 (603)
T KOG0318|consen 177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG---------SDGKIYIYDGKTGEKVGELED-SDAHKGSIFALSWSPD 246 (603)
T ss_pred CCCeeeeecccccccceeeEEECCCCCeEEEec---------CCccEEEEcCCCccEEEEecC-CCCccccEEEEEECCC
Confidence 33333321 1 1223788899999999988865 367899999887776544432 2234555779999999
Q ss_pred CeEEEEE
Q 002194 255 STLLVCT 261 (954)
Q Consensus 255 G~~l~~~ 261 (954)
++.++.+
T Consensus 247 s~~~~T~ 253 (603)
T KOG0318|consen 247 STQFLTV 253 (603)
T ss_pred CceEEEe
Confidence 9999977
|
|
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-12 Score=141.39 Aligned_cols=228 Identities=17% Similarity=0.088 Sum_probs=136.8
Q ss_pred EEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC
Q 002194 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (954)
Q Consensus 643 ~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (954)
.+...||..+.......+. .+.+.|+||++||.+.. ....+....+..|+++||.|+..++
T Consensus 35 ~~~~~dg~~~~l~w~~~~~----~~~~~p~vll~HG~~g~-------------~~~~~~~~~~~~l~~~G~~v~~~d~-- 95 (324)
T PRK10985 35 RLELPDGDFVDLAWSEDPA----QARHKPRLVLFHGLEGS-------------FNSPYAHGLLEAAQKRGWLGVVMHF-- 95 (324)
T ss_pred EEECCCCCEEEEecCCCCc----cCCCCCEEEEeCCCCCC-------------CcCHHHHHHHHHHHHCCCEEEEEeC--
Confidence 3556788766544321111 12236899999996311 0111222356678899999999555
Q ss_pred CCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc--ccEEEEeccCCCCCC
Q 002194 723 IIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL--FCCGIARSGAYNRTL 798 (954)
Q Consensus 723 ~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~--~~a~v~~~~~~~~~~ 798 (954)
+|+|.+.. ...+....++|+..+++++.++. ...+++++||||||.+++.+++++++. ++++|++++.++...
T Consensus 96 -rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~ 172 (324)
T PRK10985 96 -RGCSGEPNRLHRIYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEA 172 (324)
T ss_pred -CCCCCCccCCcceECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHH
Confidence 55554321 11222235789999999998863 235799999999999988888876543 888888887755210
Q ss_pred CC------C--CC-------------------cc---cc-------chh-------------hh-cHHHHHhcCcccccC
Q 002194 799 TP------F--GF-------------------QN---ED-------RTL-------------WE-ATSTYVEMSPFMSAN 827 (954)
Q Consensus 799 ~~------~--~~-------------------~~---~~-------~~~-------------~~-~~~~~~~~sp~~~~~ 827 (954)
.. + .+ .. .. ... +. ..+.|...+....+.
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~ 252 (324)
T PRK10985 173 CSYRMEQGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLN 252 (324)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHh
Confidence 00 0 00 00 00 000 00 112333445556678
Q ss_pred CCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcc----cHHHHHHHHHHHHHHhc
Q 002194 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE----SIMHVLWETDRWLQKYC 898 (954)
Q Consensus 828 ~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~----~~~~~~~~i~~fl~~~l 898 (954)
++++|+|+|+|++|.+++ ......+.+ ...++++++++++||...... ...-.-+.+.+||+.++
T Consensus 253 ~i~~P~lii~g~~D~~~~--~~~~~~~~~----~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~ 321 (324)
T PRK10985 253 QIRKPTLIIHAKDDPFMT--HEVIPKPES----LPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYL 321 (324)
T ss_pred CCCCCEEEEecCCCCCCC--hhhChHHHH----hCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhh
Confidence 889999999999999987 655444322 223578889999999743211 11123345788887664
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=132.11 Aligned_cols=122 Identities=11% Similarity=0.111 Sum_probs=77.5
Q ss_pred ceEEEeccC-c-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCC
Q 002194 367 QVGVWTTDG-I-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ 444 (954)
Q Consensus 367 ~l~l~d~~g-~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 444 (954)
++++|+... + -+.+++.+ ..-+..+.|||||+.|+-. +-...|-+|+. .+
T Consensus 347 tlflW~p~~~kkpi~rmtgH-------------q~lVn~V~fSPd~r~IASa-------------SFDkSVkLW~g--~t 398 (480)
T KOG0271|consen 347 TLFLWNPFKSKKPITRMTGH-------------QALVNHVSFSPDGRYIASA-------------SFDKSVKLWDG--RT 398 (480)
T ss_pred eEEEecccccccchhhhhch-------------hhheeeEEECCCccEEEEe-------------ecccceeeeeC--CC
Confidence 899997652 2 22333332 2445789999999977765 33446777874 34
Q ss_pred CCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEE
Q 002194 445 GEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYV 524 (954)
Q Consensus 445 g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l 524 (954)
|.....+..+-..+..++||.|.|.|+..+.+.+ ..+|.+.... ...-..++...+|. +-|||||..+
T Consensus 399 Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT--LKvw~V~tkK----l~~DLpGh~DEVf~------vDwspDG~rV 466 (480)
T KOG0271|consen 399 GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDST--LKVWDVRTKK----LKQDLPGHADEVFA------VDWSPDGQRV 466 (480)
T ss_pred cchhhhhhhccceeEEEEeccCccEEEEcCCCce--EEEEEeeeee----ecccCCCCCceEEE------EEecCCCcee
Confidence 4444445556667888999999998888766554 4555554322 11112233445555 7899999988
Q ss_pred EEEE
Q 002194 525 IAKI 528 (954)
Q Consensus 525 ~~~~ 528 (954)
+-..
T Consensus 467 ~sgg 470 (480)
T KOG0271|consen 467 ASGG 470 (480)
T ss_pred ecCC
Confidence 7654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-11 Score=130.18 Aligned_cols=266 Identities=15% Similarity=0.147 Sum_probs=165.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..+.|+|||+.|++...+ +.+++|++.. + .....+.. ...
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~---------------------------------g~i~i~~~~~-~--~~~~~~~~--~~~ 52 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGD---------------------------------GTIKVWDLET-G--ELLRTLKG--HTG 52 (289)
T ss_pred CEEEEEEcCCCCEEEEeecC---------------------------------cEEEEEEeeC-C--CcEEEEec--CCc
Confidence 56789999999999988754 4789999853 1 12233332 223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..+.|+|+++.|++... ...|++++.++++.......... .+..+.|+++++.++...
T Consensus 53 ~i~~~~~~~~~~~l~~~~~---------~~~i~i~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~------- 112 (289)
T cd00200 53 PVRDVAASADGTYLASGSS---------DKTIRLWDLETGECVRTLTGHTS----YVSSVAFSPDGRILSSSS------- 112 (289)
T ss_pred ceeEEEECCCCCEEEEEcC---------CCeEEEEEcCcccceEEEeccCC----cEEEEEEcCCCCEEEEec-------
Confidence 5668999999988888542 56788888877543322222221 166889999988777651
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee-EcCCC-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-~l~~~-~~~~~~~~SpDGk~l 346 (954)
....|..+++ +++.. .+... ..+..+.|+|+++.|
T Consensus 113 ------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 150 (289)
T cd00200 113 ------------------------------------------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFV 150 (289)
T ss_pred ------------------------------------------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEE
Confidence 1235777777 55433 33323 567889999998888
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
+..... +.+.+||+..++. ..+... ...+..+.|+||++.+++.
T Consensus 151 ~~~~~~-------------~~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~--------- 195 (289)
T cd00200 151 ASSSQD-------------GTIKLWDLRTGKCVATLTGH-------------TGEVNSVAFSPDGEKLLSS--------- 195 (289)
T ss_pred EEEcCC-------------CcEEEEEccccccceeEecC-------------ccccceEEECCCcCEEEEe---------
Confidence 776522 3799999985432 222221 1234678999999877776
Q ss_pred cccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCC
Q 002194 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~ 505 (954)
...+.+.+|+. ..+.....+......+..+.|+|++..++... .+ ..|++++..++ ............
T Consensus 196 ----~~~~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~---~~i~i~~~~~~--~~~~~~~~~~~~ 263 (289)
T cd00200 196 ----SSDGTIKLWDL--STGKCLGTLRGHENGVNSVAFSPDGYLLASGS-ED---GTIRVWDLRTG--ECVQTLSGHTNS 263 (289)
T ss_pred ----cCCCcEEEEEC--CCCceecchhhcCCceEEEEEcCCCcEEEEEc-CC---CcEEEEEcCCc--eeEEEccccCCc
Confidence 23557888886 22223333334555678899999966665543 22 24666666553 222222222222
Q ss_pred ccCCCCCCCeeeccCCcEEEEEE
Q 002194 506 VYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 506 ~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+.. +.|+|+|+.++...
T Consensus 264 i~~------~~~~~~~~~l~~~~ 280 (289)
T cd00200 264 VTS------LAWSPDGKRLASGS 280 (289)
T ss_pred EEE------EEECCCCCEEEEec
Confidence 222 78999988877665
|
|
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.8e-12 Score=135.17 Aligned_cols=211 Identities=14% Similarity=0.099 Sum_probs=133.2
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+++.+.... + + + .|.||++||..... ..| ...... .+.+|.|++ .|..|+
T Consensus 9 ~~~~~~~~~~~~~-~--~-~---~~plvllHG~~~~~-----------~~w----~~~~~~-L~~~~~vi~---~Dl~G~ 62 (276)
T TIGR02240 9 LDGQSIRTAVRPG-K--E-G---LTPLLIFNGIGANL-----------ELV----FPFIEA-LDPDLEVIA---FDVPGV 62 (276)
T ss_pred cCCcEEEEEEecC-C--C-C---CCcEEEEeCCCcch-----------HHH----HHHHHH-hccCceEEE---ECCCCC
Confidence 4777777655421 1 1 1 35688999953110 011 122323 346799999 677788
Q ss_pred CCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC------
Q 002194 727 GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL------ 798 (954)
Q Consensus 727 G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~------ 798 (954)
|.+..+. .......+|+.+.++.+ +.+++.|+||||||.+++.++.++|++++++|++++......
T Consensus 63 G~S~~~~~~~~~~~~~~~~~~~i~~l------~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 136 (276)
T TIGR02240 63 GGSSTPRHPYRFPGLAKLAARMLDYL------DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPK 136 (276)
T ss_pred CCCCCCCCcCcHHHHHHHHHHHHHHh------CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchh
Confidence 8875432 22455566766666665 335799999999999999999999999999999987542110
Q ss_pred -----CC-CCCccc-----------------cchhhhc-H---------HHHH------hcCcccccCCCCCCEEEEEeC
Q 002194 799 -----TP-FGFQNE-----------------DRTLWEA-T---------STYV------EMSPFMSANKLKKPILLVHGE 839 (954)
Q Consensus 799 -----~~-~~~~~~-----------------~~~~~~~-~---------~~~~------~~sp~~~~~~~~~P~Lii~G~ 839 (954)
.. ..+... ....... . ..+. .......+.++++|+|+++|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~ 216 (276)
T TIGR02240 137 VLMMMASPRRYIQPSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGD 216 (276)
T ss_pred HHHHhcCchhhhccccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeC
Confidence 00 000000 0000000 0 0000 011123357889999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
+|..+| +..++++.+.+.. .+++++++ ||... .+....+.+.+.+|+++.
T Consensus 217 ~D~~v~--~~~~~~l~~~~~~----~~~~~i~~-gH~~~-~e~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 217 DDPIIP--LINMRLLAWRIPN----AELHIIDD-GHLFL-ITRAEAVAPIIMKFLAEE 266 (276)
T ss_pred CCCcCC--HHHHHHHHHhCCC----CEEEEEcC-CCchh-hccHHHHHHHHHHHHHHh
Confidence 999998 8888888776643 47777886 99864 567788899999999875
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.2e-11 Score=129.54 Aligned_cols=246 Identities=14% Similarity=0.069 Sum_probs=145.7
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
...++|||||+.++.+... + ..|++|++.+ ++.... ++.+..
T Consensus 33 ~~~l~~~~dg~~l~~~~~~----------------------~----------~~v~~~d~~~----~~~~~~--~~~~~~ 74 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASD----------------------S----------DTIQVIDLAT----GEVIGT--LPSGPD 74 (300)
T ss_pred CCceEECCCCCEEEEEECC----------------------C----------CeEEEEECCC----CcEEEe--ccCCCC
Confidence 4578999999987655431 0 3688999743 332221 222234
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
.....|+|||+.++.+.. ....|+++|+.+++.......... ...+.|+|||+.+++...
T Consensus 75 ~~~~~~~~~g~~l~~~~~--------~~~~l~~~d~~~~~~~~~~~~~~~-----~~~~~~~~dg~~l~~~~~------- 134 (300)
T TIGR03866 75 PELFALHPNGKILYIANE--------DDNLVTVIDIETRKVLAEIPVGVE-----PEGMAVSPDGKIVVNTSE------- 134 (300)
T ss_pred ccEEEECCCCCEEEEEcC--------CCCeEEEEECCCCeEEeEeeCCCC-----cceEEECCCCCEEEEEec-------
Confidence 567899999997766431 234799999887654332221211 457899999999887611
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE-cCCCccccccccCCCCcEEEE
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPPAVYTSLDPSPDEKYILI 348 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~-l~~~~~~~~~~~SpDGk~l~~ 348 (954)
....++.++. +++... +........++|+|||++|++
T Consensus 135 -----------------------------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 135 -----------------------------------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWV 173 (300)
T ss_pred -----------------------------------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEE
Confidence 0112344565 443322 222234456789999999987
Q ss_pred EeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
.... .+.+.+||+++++. +.+.... ....+ .......+.|+|||+.++...
T Consensus 174 ~~~~------------~~~v~i~d~~~~~~~~~~~~~~-~~~~~-----~~~~~~~i~~s~dg~~~~~~~---------- 225 (300)
T TIGR03866 174 SSEI------------GGTVSVIDVATRKVIKKITFEI-PGVHP-----EAVQPVGIKLTKDGKTAFVAL---------- 225 (300)
T ss_pred EcCC------------CCEEEEEEcCcceeeeeeeecc-ccccc-----ccCCccceEECCCCCEEEEEc----------
Confidence 6532 23799999986543 4333211 00000 001123578999999754431
Q ss_pred cccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
...+.+.+|+. .+++..........+..++|+|||++|+.+...+ ..|.++|+.++
T Consensus 226 --~~~~~i~v~d~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~---~~i~v~d~~~~ 281 (300)
T TIGR03866 226 --GPANRVAVVDA---KTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVS---NDVSVIDVAAL 281 (300)
T ss_pred --CCCCeEEEEEC---CCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCC---CeEEEEECCCC
Confidence 12346888886 4444433323344577899999999987764333 35888888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.6e-12 Score=127.70 Aligned_cols=199 Identities=15% Similarity=0.130 Sum_probs=133.9
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh----hHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR----FVEQLVACAEA 745 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~----~~~~~~~D~~~ 745 (954)
-|+|+++||.|.. |..+. .....|+++||.|++ .|.+|||.+..+.. .......|+..
T Consensus 44 gP~illlHGfPe~--------------wyswr-~q~~~la~~~~rviA---~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~ 105 (322)
T KOG4178|consen 44 GPIVLLLHGFPES--------------WYSWR-HQIPGLASRGYRVIA---PDLRGYGFSDAPPHISEYTIDELVGDIVA 105 (322)
T ss_pred CCEEEEEccCCcc--------------chhhh-hhhhhhhhcceEEEe---cCCCCCCCCCCCCCcceeeHHHHHHHHHH
Confidence 7999999998632 22222 245578999999999 88889999987654 24456777777
Q ss_pred HHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC--------C-------CCCCCCCccc----
Q 002194 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN--------R-------TLTPFGFQNE---- 806 (954)
Q Consensus 746 av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~--------~-------~~~~~~~~~~---- 806 (954)
.++.|- -+|+.++||+||+.+|..++..+|+++++.|+.+..+. . .+....++..
T Consensus 106 lld~Lg------~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E 179 (322)
T KOG4178|consen 106 LLDHLG------LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPE 179 (322)
T ss_pred HHHHhc------cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcch
Confidence 777763 46999999999999999999999999999999875432 0 0000000000
Q ss_pred -------------------------------cchh---hhcH-------------------HHHHhcCc--ccccCCCCC
Q 002194 807 -------------------------------DRTL---WEAT-------------------STYVEMSP--FMSANKLKK 831 (954)
Q Consensus 807 -------------------------------~~~~---~~~~-------------------~~~~~~sp--~~~~~~~~~ 831 (954)
.... |++. +++..+.+ .....+++.
T Consensus 180 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~i 259 (322)
T KOG4178|consen 180 TELSKDDTEMLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITI 259 (322)
T ss_pred hhhccchhHHhHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhcccccccccc
Confidence 0001 1111 11122221 234466789
Q ss_pred CEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 832 PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 832 P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
|++++.|++|.+.+ +..-.+.+++.--. ..+.+++++.||.. ..++.+++.+.|++||++.
T Consensus 260 Pv~fi~G~~D~v~~--~p~~~~~~rk~vp~--l~~~vv~~~~gH~v-qqe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 260 PVLFIWGDLDPVLP--YPIFGELYRKDVPR--LTERVVIEGIGHFV-QQEKPQEVNQAILGFINSF 320 (322)
T ss_pred ceEEEEecCccccc--chhHHHHHHHhhcc--ccceEEecCCcccc-cccCHHHHHHHHHHHHHhh
Confidence 99999999999987 44222233322111 23678899999987 4788899999999999875
|
|
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.1e-12 Score=133.44 Aligned_cols=195 Identities=14% Similarity=0.113 Sum_probs=123.4
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVE 748 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~ 748 (954)
.|.||++||.+... ..| ...+..| +++|.|+. .+.+|+|.+.... .......+|+.++++
T Consensus 16 ~~~iv~lhG~~~~~-----------~~~----~~~~~~l-~~~~~vi~---~D~~G~G~s~~~~~~~~~~~~~d~~~~l~ 76 (255)
T PRK10673 16 NSPIVLVHGLFGSL-----------DNL----GVLARDL-VNDHDIIQ---VDMRNHGLSPRDPVMNYPAMAQDLLDTLD 76 (255)
T ss_pred CCCEEEECCCCCch-----------hHH----HHHHHHH-hhCCeEEE---ECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 58899999963211 111 1123233 46899999 6667888775432 234566778888777
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC-CCCCCC-------------CCCCccc--cchh--
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA-YNRTLT-------------PFGFQNE--DRTL-- 810 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~-~~~~~~-------------~~~~~~~--~~~~-- 810 (954)
++ ..+++.++||||||.+++.++.++|++++++|++++. ...... ....... ....
T Consensus 77 ~l------~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (255)
T PRK10673 77 AL------QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMR 150 (255)
T ss_pred Hc------CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHH
Confidence 65 3357999999999999999999999999999987532 111000 0000000 0000
Q ss_pred --------------------hh--cH---HHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcE
Q 002194 811 --------------------WE--AT---STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALC 865 (954)
Q Consensus 811 --------------------~~--~~---~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~ 865 (954)
|. .. ..+........+.++++|+|+++|++|..++ ....+.+.+.+. ++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~~----~~ 224 (255)
T PRK10673 151 QHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVT--EAYRDDLLAQFP----QA 224 (255)
T ss_pred HhcCCHHHHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCC--HHHHHHHHHhCC----Cc
Confidence 00 00 0111111122345678999999999999987 666666655443 35
Q ss_pred EEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 866 RLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 866 ~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
++.+++++||... .+....+.+.+.+||.+
T Consensus 225 ~~~~~~~~gH~~~-~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 225 RAHVIAGAGHWVH-AEKPDAVLRAIRRYLND 254 (255)
T ss_pred EEEEeCCCCCeee-ccCHHHHHHHHHHHHhc
Confidence 8889999999764 56677888899999875
|
|
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-12 Score=139.83 Aligned_cols=246 Identities=15% Similarity=0.105 Sum_probs=152.1
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcE
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (954)
..++.|+..+++.||..|...-+.+.. ......+.|.|+++||....+..+. ...+ ....+..|+++||.
T Consensus 40 ~gy~~e~h~v~T~DGy~L~l~ri~~~~-~~~~~~~~~~Vll~HGl~~ss~~w~---~~~~------~~sla~~La~~Gyd 109 (395)
T PLN02872 40 AGYSCTEHTIQTKDGYLLALQRVSSRN-PRLGSQRGPPVLLQHGLFMAGDAWF---LNSP------EQSLGFILADHGFD 109 (395)
T ss_pred cCCCceEEEEECCCCcEEEEEEcCCCC-CCCCCCCCCeEEEeCccccccccee---ecCc------ccchHHHHHhCCCC
Confidence 357889999999999988877664322 1111123578999999643222110 0000 11234568899999
Q ss_pred EEEcCCCCCCC-CCCcc---cc-----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC---
Q 002194 715 ILGGPTTPIIG-EGDEE---AN-----DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--- 782 (954)
Q Consensus 715 V~~~~~~~~~G-~G~~~---~~-----~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~--- 782 (954)
|+.++.+|... +|... .+ -.+......|+.++++++.+.. .+++.++|||+||.+++.++ ..|+
T Consensus 110 V~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~ 185 (395)
T PLN02872 110 VWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVE 185 (395)
T ss_pred cccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHH
Confidence 99966655421 22111 11 1233344589999999998652 36899999999999998555 5565
Q ss_pred cccEEEEeccCCCCCC-----------------------CCCCCcc-----------c-------------------c--
Q 002194 783 LFCCGIARSGAYNRTL-----------------------TPFGFQN-----------E-------------------D-- 807 (954)
Q Consensus 783 ~~~a~v~~~~~~~~~~-----------------------~~~~~~~-----------~-------------------~-- 807 (954)
+++++++.+|+..... ..+.... . +
T Consensus 186 ~v~~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~ 265 (395)
T PLN02872 186 MVEAAALLCPISYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNAS 265 (395)
T ss_pred HHHHHHHhcchhhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchh
Confidence 4666666666421000 0000000 0 0
Q ss_pred -----------ch------hh-----------------hcHHHHHh-cCcccccCCC--CCCEEEEEeCCCCCCCCchHH
Q 002194 808 -----------RT------LW-----------------EATSTYVE-MSPFMSANKL--KKPILLVHGEEDNNSGTLTMQ 850 (954)
Q Consensus 808 -----------~~------~~-----------------~~~~~~~~-~sp~~~~~~~--~~P~Lii~G~~D~~v~~~~~~ 850 (954)
++ -| ++...|.. ..|...+.++ +.|+++++|++|..++ +..
T Consensus 266 ~~~~~~~~~pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~--~~d 343 (395)
T PLN02872 266 RIDYYLEYEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLAD--VTD 343 (395)
T ss_pred hhhHHHhcCCCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCC--HHH
Confidence 00 00 01111211 1344567777 4799999999999998 888
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCc--CCCcccHHHHHHHHHHHHHHhcc
Q 002194 851 SDRFFNALKGHGALCRLVILPFESHG--YAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
..++.+.+... .+++.+++.+|. +...+..+.+++.|++||++++.
T Consensus 344 v~~l~~~Lp~~---~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~ 391 (395)
T PLN02872 344 VEHTLAELPSK---PELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGK 391 (395)
T ss_pred HHHHHHHCCCc---cEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhh
Confidence 88888877542 477889999996 44566778899999999998764
|
|
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.8e-12 Score=136.07 Aligned_cols=195 Identities=16% Similarity=0.160 Sum_probs=122.5
Q ss_pred cEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---------hhHHHHHH
Q 002194 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---------RFVEQLVA 741 (954)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---------~~~~~~~~ 741 (954)
|.||++||.+... ..|. .....|+.+ |.|++ .|..|+|.+.... .......+
T Consensus 30 ~~vlllHG~~~~~-----------~~w~----~~~~~L~~~-~~vi~---~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~ 90 (294)
T PLN02824 30 PALVLVHGFGGNA-----------DHWR----KNTPVLAKS-HRVYA---IDLLGYGYSDKPNPRSAPPNSFYTFETWGE 90 (294)
T ss_pred CeEEEECCCCCCh-----------hHHH----HHHHHHHhC-CeEEE---EcCCCCCCCCCCccccccccccCCHHHHHH
Confidence 6799999964221 1121 234455555 69999 6777888875432 12344455
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC---CCC-CCC------cc---c--
Q 002194 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT---LTP-FGF------QN---E-- 806 (954)
Q Consensus 742 D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~---~~~-~~~------~~---~-- 806 (954)
|+.+.++.+ ..+++.++||||||.+++.++.++|++++++|++++..... ... ... .. .
T Consensus 91 ~l~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
T PLN02824 91 QLNDFCSDV------VGDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETA 164 (294)
T ss_pred HHHHHHHHh------cCCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchh
Confidence 555555544 23589999999999999999999999999999998643110 000 000 00 0
Q ss_pred c--------------chh----hhc-----H----------------HHHHhc---C----cccccCCCCCCEEEEEeCC
Q 002194 807 D--------------RTL----WEA-----T----------------STYVEM---S----PFMSANKLKKPILLVHGEE 840 (954)
Q Consensus 807 ~--------------~~~----~~~-----~----------------~~~~~~---s----p~~~~~~~~~P~Lii~G~~ 840 (954)
. ... +.. . ..+.+. . ....+.++++|+|+++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~ 244 (294)
T PLN02824 165 VGKAFFKSVATPETVKNILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEK 244 (294)
T ss_pred HHHHHHHhhcCHHHHHHHHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecC
Confidence 0 000 000 0 000000 0 1123567889999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
|..+| .+.++.+.+.. ...++++++++||... .+..+.+.+.+.+||+++
T Consensus 245 D~~~~--~~~~~~~~~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 245 DPWEP--VELGRAYANFD----AVEDFIVLPGVGHCPQ-DEAPELVNPLIESFVARH 294 (294)
T ss_pred CCCCC--hHHHHHHHhcC----CccceEEeCCCCCChh-hhCHHHHHHHHHHHHhcC
Confidence 99998 77766643322 2358889999999864 677888999999998763
|
|
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=138.01 Aligned_cols=193 Identities=15% Similarity=0.157 Sum_probs=119.4
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAV 747 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av 747 (954)
.|+||++||..... ..| ...+. .+++||.|++ .+..|+|.+.... .......+|+.+.+
T Consensus 13 ~~~li~~hg~~~~~-----------~~~----~~~~~-~l~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~i 73 (251)
T TIGR02427 13 APVLVFINSLGTDL-----------RMW----DPVLP-ALTPDFRVLR---YDKRGHGLSDAPEGPYSIEDLADDVLALL 73 (251)
T ss_pred CCeEEEEcCcccch-----------hhH----HHHHH-HhhcccEEEE---ecCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 58999999952110 111 12233 3457999999 6666777764332 12344455555554
Q ss_pred HHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC-CC-------------------------
Q 002194 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-PF------------------------- 801 (954)
Q Consensus 748 ~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-~~------------------------- 801 (954)
+.+ +.+++.++|||+||.+++.++.++|++++++|+.++....... .+
T Consensus 74 ~~~------~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (251)
T TIGR02427 74 DHL------GIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFT 147 (251)
T ss_pred HHh------CCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcc
Confidence 443 3468999999999999999999999999999888754321110 00
Q ss_pred -CCccccch---hhh------cH-------HHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc
Q 002194 802 -GFQNEDRT---LWE------AT-------STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (954)
Q Consensus 802 -~~~~~~~~---~~~------~~-------~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (954)
.+...... .+. .. ..+...+....+.++++|+|+++|++|..+| .+....+.+.+. .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~--~~~~~~~~~~~~----~ 221 (251)
T TIGR02427 148 PGFREAHPARLDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTP--PELVREIADLVP----G 221 (251)
T ss_pred cccccCChHHHHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCC--hHHHHHHHHhCC----C
Confidence 00000000 000 00 0011112223456788999999999999998 777777766653 3
Q ss_pred EEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 865 CRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 865 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
.+++++++++|... .+....+.+.+.+||
T Consensus 222 ~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl 250 (251)
T TIGR02427 222 ARFAEIRGAGHIPC-VEQPEAFNAALRDFL 250 (251)
T ss_pred ceEEEECCCCCccc-ccChHHHHHHHHHHh
Confidence 58889999999874 455667777777776
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.4e-12 Score=139.89 Aligned_cols=222 Identities=14% Similarity=0.138 Sum_probs=134.4
Q ss_pred EEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH---HCCcEEEEc
Q 002194 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL---ARGFAILGG 718 (954)
Q Consensus 642 ~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la---~~G~~V~~~ 718 (954)
..|.+..|.+++.....|++. . +.|.||++||.+.... .| .......|+ +++|.|++
T Consensus 178 ~~~~~~~~~~l~~~~~gp~~~--~---~k~~VVLlHG~~~s~~-----------~W---~~~~~~~L~~~~~~~yrVia- 237 (481)
T PLN03087 178 TSWLSSSNESLFVHVQQPKDN--K---AKEDVLFIHGFISSSA-----------FW---TETLFPNFSDAAKSTYRLFA- 237 (481)
T ss_pred eeeEeeCCeEEEEEEecCCCC--C---CCCeEEEECCCCccHH-----------HH---HHHHHHHHHHHhhCCCEEEE-
Confidence 345555678898888887641 1 2367899999642110 11 111122333 47999999
Q ss_pred CCCCCCCCCCcccchh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 719 PTTPIIGEGDEEANDR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 719 ~~~~~~G~G~~~~~~~---~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
.|..|+|.+..+.. ......+|+. ..+.+. .+.+++.++||||||.+++.++.++|++++++|++++...
T Consensus 238 --~Dl~G~G~S~~p~~~~ytl~~~a~~l~---~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~ 310 (481)
T PLN03087 238 --VDLLGFGRSPKPADSLYTLREHLEMIE---RSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYY 310 (481)
T ss_pred --ECCCCCCCCcCCCCCcCCHHHHHHHHH---HHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCcc
Confidence 66678888754321 1223333332 123333 2345899999999999999999999999999999986432
Q ss_pred CCCC---------------C-C---CCcc------c--cc----------hhhhcH----------HHHH----hc--Cc
Q 002194 796 RTLT---------------P-F---GFQN------E--DR----------TLWEAT----------STYV----EM--SP 822 (954)
Q Consensus 796 ~~~~---------------~-~---~~~~------~--~~----------~~~~~~----------~~~~----~~--sp 822 (954)
.... . + .+.. + .. ..|+.. ..+. .. .+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 390 (481)
T PLN03087 311 PVPKGVQATQYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNA 390 (481)
T ss_pred ccccchhHHHHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchh
Confidence 1100 0 0 0000 0 00 001100 0000 00 00
Q ss_pred c--------------------cccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCccc
Q 002194 823 F--------------------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES 882 (954)
Q Consensus 823 ~--------------------~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 882 (954)
. ....++++|+|++||++|..+| ++.++.+.+.+.. .+++++|++||.....+.
T Consensus 391 ~~~~l~~~i~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP--~~~~~~la~~iP~----a~l~vI~~aGH~~~v~e~ 464 (481)
T PLN03087 391 AWHTLHNIICGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIP--VECSYAVKAKVPR----ARVKVIDDKDHITIVVGR 464 (481)
T ss_pred hHHHHHHHHhchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCC--HHHHHHHHHhCCC----CEEEEeCCCCCcchhhcC
Confidence 0 0112588999999999999998 8888888776643 589999999998654466
Q ss_pred HHHHHHHHHHHHHH
Q 002194 883 IMHVLWETDRWLQK 896 (954)
Q Consensus 883 ~~~~~~~i~~fl~~ 896 (954)
...+.+.+.+|...
T Consensus 465 p~~fa~~L~~F~~~ 478 (481)
T PLN03087 465 QKEFARELEEIWRR 478 (481)
T ss_pred HHHHHHHHHHHhhc
Confidence 67788888887643
|
|
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.1e-12 Score=133.83 Aligned_cols=195 Identities=13% Similarity=0.098 Sum_probs=124.0
Q ss_pred EEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHHH
Q 002194 672 CLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVE 748 (954)
Q Consensus 672 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~ 748 (954)
+||++||..... ..| ......|++.||.|++ .+.+|+|.+.... .......+|+.+.++
T Consensus 5 ~vvllHG~~~~~-----------~~w----~~~~~~L~~~~~~via---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~ 66 (255)
T PLN02965 5 HFVFVHGASHGA-----------WCW----YKLATLLDAAGFKSTC---VDLTGAGISLTDSNTVSSSDQYNRPLFALLS 66 (255)
T ss_pred EEEEECCCCCCc-----------CcH----HHHHHHHhhCCceEEE---ecCCcCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 489999963211 111 1344567788999999 6777888875432 224555666666665
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCC---CCCCC------------CCCC--ccc---c-
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY---NRTLT------------PFGF--QNE---D- 807 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~---~~~~~------------~~~~--~~~---~- 807 (954)
.+ + . .+++.++||||||.+++.++.++|++++++|.+++.. ..... .+.+ ... .
T Consensus 67 ~l---~-~-~~~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (255)
T PLN02965 67 DL---P-P-DHKVILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPP 141 (255)
T ss_pred hc---C-C-CCCEEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCc
Confidence 53 1 1 1489999999999999999999999999999887641 10000 0000 000 0
Q ss_pred ------chhh-----hc--HH--HH--Hhc--Ccc----------cccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHH
Q 002194 808 ------RTLW-----EA--TS--TY--VEM--SPF----------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNAL 858 (954)
Q Consensus 808 ------~~~~-----~~--~~--~~--~~~--sp~----------~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l 858 (954)
.... .. .+ .+ ... .+. ..+.++++|+|+++|++|..+| +..++.+.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~--~~~~~~~~~~~ 219 (255)
T PLN02965 142 TGIMMKPEFVRHYYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFD--PVRQDVMVENW 219 (255)
T ss_pred chhhcCHHHHHHHHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCC--HHHHHHHHHhC
Confidence 0000 00 00 00 000 000 1223588999999999999998 87777777655
Q ss_pred HhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 859 KGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 859 ~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.. .++++++++||... .+..+.+.+.+.+|++.
T Consensus 220 ~~----a~~~~i~~~GH~~~-~e~p~~v~~~l~~~~~~ 252 (255)
T PLN02965 220 PP----AQTYVLEDSDHSAF-FSVPTTLFQYLLQAVSS 252 (255)
T ss_pred Cc----ceEEEecCCCCchh-hcCHHHHHHHHHHHHHH
Confidence 43 47889999999985 67778888888888765
|
|
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-11 Score=136.44 Aligned_cols=198 Identities=15% Similarity=0.178 Sum_probs=122.1
Q ss_pred cEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh---hHHHHHHHHHHHH
Q 002194 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR---FVEQLVACAEAAV 747 (954)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~---~~~~~~~D~~~av 747 (954)
|.||++||.+... ..| . .....| +.+|.|+. .|..|+|.+..+.. ......+|+.+.+
T Consensus 89 p~lvllHG~~~~~-----------~~w---~-~~~~~L-~~~~~via---~Dl~G~G~S~~~~~~~~~~~~~a~~l~~~l 149 (360)
T PLN02679 89 PPVLLVHGFGASI-----------PHW---R-RNIGVL-AKNYTVYA---IDLLGFGASDKPPGFSYTMETWAELILDFL 149 (360)
T ss_pred CeEEEECCCCCCH-----------HHH---H-HHHHHH-hcCCEEEE---ECCCCCCCCCCCCCccccHHHHHHHHHHHH
Confidence 7789999964211 011 1 223333 46899999 67778888754321 2344455555555
Q ss_pred HHHHHcCCCCCCcEEEEeeChHHHHHHHHHH-hCCCcccEEEEeccCCCCCC----CCCC------------C-------
Q 002194 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLA-HAPHLFCCGIARSGAYNRTL----TPFG------------F------- 803 (954)
Q Consensus 748 ~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~~~~~~~~----~~~~------------~------- 803 (954)
+.+ ..+++.|+||||||.+++.+++ ++|++++++|++++...... ..+. +
T Consensus 150 ~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (360)
T PLN02679 150 EEV------VQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGI 223 (360)
T ss_pred HHh------cCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhh
Confidence 543 2358999999999999998887 46899999999886431100 0000 0
Q ss_pred -----ccc--cchh-------hhc---------------------HHHHHh-------cCcccccCCCCCCEEEEEeCCC
Q 002194 804 -----QNE--DRTL-------WEA---------------------TSTYVE-------MSPFMSANKLKKPILLVHGEED 841 (954)
Q Consensus 804 -----~~~--~~~~-------~~~---------------------~~~~~~-------~sp~~~~~~~~~P~Lii~G~~D 841 (954)
... .... +.. ...+.. .+....+.++++|+||++|++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D 303 (360)
T PLN02679 224 ASALFNRVKQRDNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQD 303 (360)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCC
Confidence 000 0000 000 000110 0111345678899999999999
Q ss_pred CCCCCchHHH-HHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 842 NNSGTLTMQS-DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 842 ~~v~~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
..+| +... .++++.+.+.-.+++++++|++||... .+..+.+.+.|.+||++
T Consensus 304 ~~~p--~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~-~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 304 PFTP--LDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPH-DDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred CCcC--chhhHHHHHHhhhccCCceEEEEcCCCCCCcc-ccCHHHHHHHHHHHHHh
Confidence 9988 6542 234455544434579999999999864 67788899999999975
|
|
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=131.33 Aligned_cols=156 Identities=21% Similarity=0.216 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC---------CCCCcccc--chh
Q 002194 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---------PFGFQNED--RTL 810 (954)
Q Consensus 742 D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---------~~~~~~~~--~~~ 810 (954)
-+..|++||.+++.+++++|+|+|.|.||-+|+.+++..| .++|+|+++|..-.... ++-+.... ...
T Consensus 5 yfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 83 (213)
T PF08840_consen 5 YFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISKFS 83 (213)
T ss_dssp HHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG-E
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhhce
Confidence 4678999999999999999999999999999999999996 79999999874221000 00000000 000
Q ss_pred hhcH------HHHH------hcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc--EEEEEeCCCCCc
Q 002194 811 WEAT------STYV------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL--CRLVILPFESHG 876 (954)
Q Consensus 811 ~~~~------~~~~------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~--~~~~~~~~~~H~ 876 (954)
+... ..+. .....-.+.++++|+|+++|++|...|. ...+..+.++|+.++.+ ++++.||++||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS-~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~ 162 (213)
T PF08840_consen 84 WNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPS-SEMAEQIEERLKAAGFPHNVEHLSYPGAGHL 162 (213)
T ss_dssp E-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-H-HHHHHHHHHHHHCTT-----EEEEETTB-S-
T ss_pred ecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccch-HHHHHHHHHHHHHhCCCCcceEEEcCCCCce
Confidence 0000 0000 0011124667899999999999999871 34466788889998865 899999999998
Q ss_pred CCCc---------------------------ccHHHHHHHHHHHHHHhcc
Q 002194 877 YAAR---------------------------ESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 877 ~~~~---------------------------~~~~~~~~~i~~fl~~~l~ 899 (954)
+..+ .+.++.++++++||+++|.
T Consensus 163 i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 163 IEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp --STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6421 1346788899999999985
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.6e-12 Score=137.24 Aligned_cols=217 Identities=16% Similarity=0.116 Sum_probs=127.6
Q ss_pred EEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC
Q 002194 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (954)
Q Consensus 643 ~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (954)
.+...+|.+++...+-++ + .+.||++||++.... .......+..++|.|++ .+
T Consensus 8 ~~~~~~~~~l~y~~~g~~------~--~~~lvllHG~~~~~~----------------~~~~~~~~~~~~~~vi~---~D 60 (306)
T TIGR01249 8 YLNVSDNHQLYYEQSGNP------D--GKPVVFLHGGPGSGT----------------DPGCRRFFDPETYRIVL---FD 60 (306)
T ss_pred eEEcCCCcEEEEEECcCC------C--CCEEEEECCCCCCCC----------------CHHHHhccCccCCEEEE---EC
Confidence 445557887775443211 1 345788999742211 01122234457899999 66
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC-----
Q 002194 723 IIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT----- 797 (954)
Q Consensus 723 ~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~----- 797 (954)
..|+|.+............|+.+.+..+.+.- +.+++.++||||||.+++.++.++|++++++|+.++.....
T Consensus 61 ~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 138 (306)
T TIGR01249 61 QRGCGKSTPHACLEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSW 138 (306)
T ss_pred CCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHH
Confidence 67888775432211122334444444444432 33579999999999999999999999999988876532100
Q ss_pred --------CCC-----------CCCc-------------ccc-------chh---hhc----------------H---HH
Q 002194 798 --------LTP-----------FGFQ-------------NED-------RTL---WEA----------------T---ST 816 (954)
Q Consensus 798 --------~~~-----------~~~~-------------~~~-------~~~---~~~----------------~---~~ 816 (954)
..+ .... ... ... |.. + ..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (306)
T TIGR01249 139 FYEGGASMIYPDAWQRFMDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLA 218 (306)
T ss_pred HHhcchhhhCHHHHHHHhhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHH
Confidence 000 0000 000 000 000 0 00
Q ss_pred HHh-----------cC----cccccCCC-CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCc
Q 002194 817 YVE-----------MS----PFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880 (954)
Q Consensus 817 ~~~-----------~s----p~~~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 880 (954)
+.. .+ -...+.++ ++|+|++||++|..+| ...+.++++.+. ..++++++++||....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~g~~D~~~p--~~~~~~~~~~~~----~~~~~~~~~~gH~~~~- 291 (306)
T TIGR01249 219 FARLENHYFVNKGFLDVENFILDNISKIRNIPTYIVHGRYDLCCP--LQSAWALHKAFP----EAELKVTNNAGHSAFD- 291 (306)
T ss_pred HHHHHHhHHHHhchhcCchHHHHhhhhccCCCeEEEecCCCCCCC--HHHHHHHHHhCC----CCEEEEECCCCCCCCC-
Confidence 000 00 01233456 5899999999999998 888888887754 3588899999999753
Q ss_pred ccHHHHHHHHHHHHHHhc
Q 002194 881 ESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 881 ~~~~~~~~~i~~fl~~~l 898 (954)
....+.+.+|+..+|
T Consensus 292 ---~~~~~~i~~~~~~~~ 306 (306)
T TIGR01249 292 ---PNNLAALVHALETYL 306 (306)
T ss_pred ---hHHHHHHHHHHHHhC
Confidence 345677788887764
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-11 Score=136.94 Aligned_cols=185 Identities=14% Similarity=0.098 Sum_probs=122.8
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 782 (954)
..+..|+++||.|+.. +.+|.|.+............|+.++++++.++. ..+++.++||||||.+++.+++.+|+
T Consensus 85 ~~~~~L~~~G~~V~~~---D~~g~g~s~~~~~~~d~~~~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~ 159 (350)
T TIGR01836 85 SLVRGLLERGQDVYLI---DWGYPDRADRYLTLDDYINGYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPD 159 (350)
T ss_pred hHHHHHHHCCCeEEEE---eCCCCCHHHhcCCHHHHHHHHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCch
Confidence 4677899999999994 445556544333333334456889999998874 33589999999999999999999999
Q ss_pred cccEEEEeccCCCCCCCC-----C-------------C-Ccc-----------ccchhh----------hcHH---HHH-
Q 002194 783 LFCCGIARSGAYNRTLTP-----F-------------G-FQN-----------EDRTLW----------EATS---TYV- 818 (954)
Q Consensus 783 ~~~a~v~~~~~~~~~~~~-----~-------------~-~~~-----------~~~~~~----------~~~~---~~~- 818 (954)
+++++|++++.++..... + + ... .....| .+.+ .|.
T Consensus 160 ~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (350)
T TIGR01836 160 KIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMGNIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLR 239 (350)
T ss_pred heeeEEEeccccccCCCCchhhhhccccCHHHHHHhcCCCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHH
Confidence 999999999876632110 0 0 000 000000 0000 010
Q ss_pred --h--cC--c-----------------------------ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCC
Q 002194 819 --E--MS--P-----------------------------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA 863 (954)
Q Consensus 819 --~--~s--p-----------------------------~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~ 863 (954)
. .+ + ...+.++++|+|+++|++|..+| +..+..+++.+.. .
T Consensus 240 ~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~--~~~~~~~~~~~~~--~ 315 (350)
T TIGR01836 240 MEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPILNIYAERDHLVP--PDASKALNDLVSS--E 315 (350)
T ss_pred HHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECCEEccHHhCCCCeEEEecCCCCcCC--HHHHHHHHHHcCC--C
Confidence 0 00 0 01244678999999999999998 8888888887653 4
Q ss_pred cEEEEEeCCCCCcCC--CcccHHHHHHHHHHHHHHh
Q 002194 864 LCRLVILPFESHGYA--ARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 864 ~~~~~~~~~~~H~~~--~~~~~~~~~~~i~~fl~~~ 897 (954)
+++++++++ ||... ......+++..+.+||.++
T Consensus 316 ~~~~~~~~~-gH~~~~~~~~~~~~v~~~i~~wl~~~ 350 (350)
T TIGR01836 316 DYTELSFPG-GHIGIYVSGKAQKEVPPAIGKWLQAR 350 (350)
T ss_pred CeEEEEcCC-CCEEEEECchhHhhhhHHHHHHHHhC
Confidence 578888885 77542 2234578889999999763
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-11 Score=123.22 Aligned_cols=177 Identities=12% Similarity=0.023 Sum_probs=106.7
Q ss_pred cEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH--CCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002194 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA--RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (954)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (954)
|.||++||.... +..|. .......+.+ .+|.|++++ ..|++ +++.+.++
T Consensus 2 p~illlHGf~ss-----------~~~~~--~~~~~~~l~~~~~~~~v~~~d---l~g~~-------------~~~~~~l~ 52 (190)
T PRK11071 2 STLLYLHGFNSS-----------PRSAK--ATLLKNWLAQHHPDIEMIVPQ---LPPYP-------------ADAAELLE 52 (190)
T ss_pred CeEEEECCCCCC-----------cchHH--HHHHHHHHHHhCCCCeEEeCC---CCCCH-------------HHHHHHHH
Confidence 679999995311 11111 0012233444 379999944 44542 12334444
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC-----C--CCCccccchhh--hcHHHHHh
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-----P--FGFQNEDRTLW--EATSTYVE 819 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-----~--~~~~~~~~~~~--~~~~~~~~ 819 (954)
.+.++. +.+++.++|+|+||++++.++.++|. + +|+++|..+.... . ..........+ ...+....
T Consensus 53 ~l~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 127 (190)
T PRK11071 53 SLVLEH--GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPYTGQQYVLESRHIYDLKV 127 (190)
T ss_pred HHHHHc--CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCcccccCCCcEEEcHHHHHHHHh
Confidence 444442 23589999999999999999999973 3 4677776552100 0 00000001111 11122222
Q ss_pred cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 820 ~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
..+.. +. ...|++++||++|++|| +.++.++++. +++.+++|++|.+... +..++.+.+||.
T Consensus 128 ~~~~~-i~-~~~~v~iihg~~De~V~--~~~a~~~~~~-------~~~~~~~ggdH~f~~~---~~~~~~i~~fl~ 189 (190)
T PRK11071 128 MQIDP-LE-SPDLIWLLQQTGDEVLD--YRQAVAYYAA-------CRQTVEEGGNHAFVGF---ERYFNQIVDFLG 189 (190)
T ss_pred cCCcc-CC-ChhhEEEEEeCCCCcCC--HHHHHHHHHh-------cceEEECCCCcchhhH---HHhHHHHHHHhc
Confidence 33222 33 67789999999999999 9999999984 3556789999998543 667888888874
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-10 Score=115.72 Aligned_cols=292 Identities=13% Similarity=0.099 Sum_probs=167.3
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..|++|++.+ ..++...+.....-......+|+|++++|+.... .++.+...-|.+|.+.|....+-.....+-
T Consensus 16 ~gI~v~~ld~--~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~----~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~ 89 (346)
T COG2706 16 QGIYVFNLDT--KTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNE----PGEEGGVAAYRIDPDDGRLTFLNRQTLPGS 89 (346)
T ss_pred CceEEEEEeC--cccccchhhhccccCCCceEEECCCCCEEEEEEe----cCCcCcEEEEEEcCCCCeEEEeeccccCCC
Confidence 4789999952 2233222211112236788899999998877764 234667778888887787765533222110
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
....++.++||+.|+.+... .+.|-++.+
T Consensus 90 --~p~yvsvd~~g~~vf~AnY~------------------------------------------------~g~v~v~p~~ 119 (346)
T COG2706 90 --PPCYVSVDEDGRFVFVANYH------------------------------------------------SGSVSVYPLQ 119 (346)
T ss_pred --CCeEEEECCCCCEEEEEEcc------------------------------------------------CceEEEEEcc
Confidence 02356788999988877211 112222222
Q ss_pred -CCceeEcCC---C-----------ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCC
Q 002194 322 -DGTVKEIGP---P-----------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL 386 (954)
Q Consensus 322 -~G~~~~l~~---~-----------~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~ 386 (954)
+|.+..+.. . ...-...+.|||++|+....... .+++|+++.+..........
T Consensus 120 ~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D------------ri~~y~~~dg~L~~~~~~~v 187 (346)
T COG2706 120 ADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD------------RIFLYDLDDGKLTPADPAEV 187 (346)
T ss_pred cCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc------------eEEEEEcccCcccccccccc
Confidence 332221110 0 11334678999999998875432 78999998554433332211
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec---------ccc
Q 002194 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL---------DLR 457 (954)
Q Consensus 387 ~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~---------~~~ 457 (954)
....|.|.+.|.|+|+ ++|.+.+. +..-.+|-++ +. .++.+.|... ...
T Consensus 188 ---------~~G~GPRHi~FHpn~k-~aY~v~EL---------~stV~v~~y~--~~-~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 188 ---------KPGAGPRHIVFHPNGK-YAYLVNEL---------NSTVDVLEYN--PA-VGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred ---------CCCCCcceEEEcCCCc-EEEEEecc---------CCEEEEEEEc--CC-CceEEEeeeeccCccccCCCCc
Confidence 1125789999999998 56665444 2222344444 22 4555544211 112
Q ss_pred cCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcE
Q 002194 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTY 537 (954)
Q Consensus 458 ~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 537 (954)
...+..|+|||.|+.+ ++.-....+|.++.+++..+....+......... +.++++|++|+....
T Consensus 246 ~aaIhis~dGrFLYas-NRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~------F~i~~~g~~Liaa~q-------- 310 (346)
T COG2706 246 AAAIHISPDGRFLYAS-NRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRD------FNINPSGRFLIAANQ-------- 310 (346)
T ss_pred eeEEEECCCCCEEEEe-cCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc------ceeCCCCCEEEEEcc--------
Confidence 3457889999987765 4443346677888887622111122221111111 568999999888763
Q ss_pred EEEecCCCCCCCCCCeEEEEECCCCCeEEEec
Q 002194 538 ILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (954)
Q Consensus 538 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 569 (954)
+++.-.+|..|-++|+...+..
T Consensus 311 ----------~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 311 ----------KSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred ----------CCCcEEEEEEcCCCceEEeccc
Confidence 2344568888999998776644
|
|
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-11 Score=135.61 Aligned_cols=204 Identities=17% Similarity=0.127 Sum_probs=121.8
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhh---HHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRF---VEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~---~~~~~~D~~~a 746 (954)
.|+||++||.+... ..| ......|+ ++|.|+. .+.+|+|.+..+... .....+.+.+.
T Consensus 105 ~p~vvllHG~~~~~-----------~~~----~~~~~~L~-~~~~vi~---~D~rG~G~S~~~~~~~~~~~~~~~~~~~~ 165 (402)
T PLN02894 105 APTLVMVHGYGASQ-----------GFF----FRNFDALA-SRFRVIA---IDQLGWGGSSRPDFTCKSTEETEAWFIDS 165 (402)
T ss_pred CCEEEEECCCCcch-----------hHH----HHHHHHHH-hCCEEEE---ECCCCCCCCCCCCcccccHHHHHHHHHHH
Confidence 58999999963210 011 12233444 4699999 666777877543211 11111122222
Q ss_pred H-HHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC-C-----------C-----------C
Q 002194 747 V-EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-P-----------F-----------G 802 (954)
Q Consensus 747 v-~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-~-----------~-----------~ 802 (954)
+ +++... +.+++.++||||||++++.++.++|++++++|+++|..-.... . + .
T Consensus 166 i~~~~~~l---~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (402)
T PLN02894 166 FEEWRKAK---NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESN 242 (402)
T ss_pred HHHHHHHc---CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcC
Confidence 2 333322 4468999999999999999999999999999988764211000 0 0 0
Q ss_pred Cccc--------------cchh--------------hhcHHHH---H-----------------------hcCcc-cccC
Q 002194 803 FQNE--------------DRTL--------------WEATSTY---V-----------------------EMSPF-MSAN 827 (954)
Q Consensus 803 ~~~~--------------~~~~--------------~~~~~~~---~-----------------------~~sp~-~~~~ 827 (954)
+... .... .+..+.+ . ...++ ..+.
T Consensus 243 ~~p~~~~~~~gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (402)
T PLN02894 243 FTPQKIIRGLGPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESAS 322 (402)
T ss_pred CCHHHHHHhccchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcc
Confidence 0000 0000 0000000 0 00111 2356
Q ss_pred CCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcccCC
Q 002194 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 828 ~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
++++|+|+++|++|..++ ....++.+.+ +..+++++++++||... .++...+.+.+.+|++.++....
T Consensus 323 ~I~vP~liI~G~~D~i~~---~~~~~~~~~~---~~~~~~~~i~~aGH~~~-~E~P~~f~~~l~~~~~~~~~~~~ 390 (402)
T PLN02894 323 EWKVPTTFIYGRHDWMNY---EGAVEARKRM---KVPCEIIRVPQGGHFVF-LDNPSGFHSAVLYACRKYLSPDR 390 (402)
T ss_pred cCCCCEEEEEeCCCCCCc---HHHHHHHHHc---CCCCcEEEeCCCCCeee-ccCHHHHHHHHHHHHHHhccCCc
Confidence 788999999999998653 5555554433 34478999999999864 67788899999999999986543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-11 Score=116.85 Aligned_cols=241 Identities=14% Similarity=0.174 Sum_probs=160.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCC-
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG- 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~- 188 (954)
.+..+.++||++.||..... .|+++|+++ +...++..+...
T Consensus 42 qVNrLeiTpdk~~LAaa~~q----------------------------------hvRlyD~~S----~np~Pv~t~e~h~ 83 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAAGNQ----------------------------------HVRLYDLNS----NNPNPVATFEGHT 83 (311)
T ss_pred ceeeEEEcCCcchhhhccCC----------------------------------eeEEEEccC----CCCCceeEEeccC
Confidence 56788999999999988874 899999976 333333323221
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
.++..+.|--||+|++..+ .+|...|| |+..-...++...... +..+.-.|+-.-|+..
T Consensus 84 kNVtaVgF~~dgrWMyTgs-------eDgt~kIW--dlR~~~~qR~~~~~sp-----Vn~vvlhpnQteLis~------- 142 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGS-------EDGTVKIW--DLRSLSCQRNYQHNSP-----VNTVVLHPNQTELISG------- 142 (311)
T ss_pred CceEEEEEeecCeEEEecC-------CCceEEEE--eccCcccchhccCCCC-----cceEEecCCcceEEee-------
Confidence 3788999999999998733 44455555 5555555555544432 6677777776556543
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC--ceeEcCCC-ccccccccCCCCc
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--TVKEIGPP-AVYTSLDPSPDEK 344 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G--~~~~l~~~-~~~~~~~~SpDGk 344 (954)
+ ..+.|+++|+ .. ....+.+. ..+.+.+..|||+
T Consensus 143 ----------------d--------------------------qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs 180 (311)
T KOG0315|consen 143 ----------------D--------------------------QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS 180 (311)
T ss_pred ----------------c--------------------------CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc
Confidence 0 3356888888 43 23334444 6788999999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCce----EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~----~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~ 420 (954)
.++...+.+ +.|+|++-+.+ ..++...+ ..........+|||+|.|+-.
T Consensus 181 ml~a~nnkG-------------~cyvW~l~~~~~~s~l~P~~k~~----------ah~~~il~C~lSPd~k~lat~---- 233 (311)
T KOG0315|consen 181 MLAAANNKG-------------NCYVWRLLNHQTASELEPVHKFQ----------AHNGHILRCLLSPDVKYLATC---- 233 (311)
T ss_pred EEEEecCCc-------------cEEEEEccCCCccccceEhhhee----------cccceEEEEEECCCCcEEEee----
Confidence 998877543 89999987532 23333322 222334567899999987765
Q ss_pred cCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+....+++|+.|.+ =....+++.+..-+...+||-||++|+.++.+.. .+||-+....
T Consensus 234 ---------ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~--~rlW~~~~~k 291 (311)
T KOG0315|consen 234 ---------SSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHT--ARLWDLSAGK 291 (311)
T ss_pred ---------cCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCc--eeecccccCc
Confidence 44557788875222 0122455667777888999999999999887743 7788766543
|
|
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-11 Score=132.05 Aligned_cols=210 Identities=13% Similarity=0.111 Sum_probs=130.1
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.++....+- . .|.||++||.+... ..| ...+..|++++ .|++ .|..|+
T Consensus 14 ~~g~~i~y~~~G--------~--g~~vvllHG~~~~~-----------~~w----~~~~~~L~~~~-~via---~D~~G~ 64 (295)
T PRK03592 14 VLGSRMAYIETG--------E--GDPIVFLHGNPTSS-----------YLW----RNIIPHLAGLG-RCLA---PDLIGM 64 (295)
T ss_pred ECCEEEEEEEeC--------C--CCEEEEECCCCCCH-----------HHH----HHHHHHHhhCC-EEEE---EcCCCC
Confidence 377777654431 1 36788999964211 111 13455666665 8999 666788
Q ss_pred CCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC---CC-
Q 002194 727 GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL---TP- 800 (954)
Q Consensus 727 G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~---~~- 800 (954)
|.+..+. .......+|+.+.++.+ +.+++.++|||+||.+++.++.++|++++++|++++...... ..
T Consensus 65 G~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~ 138 (295)
T PRK03592 65 GASDKPDIDYTFADHARYLDAWFDAL------GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPP 138 (295)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcch
Confidence 8875432 22445556666655554 236899999999999999999999999999999886422100 00
Q ss_pred --------CCCcc--c-----c----chhh----------hcHHHHH-----------------hcCc------------
Q 002194 801 --------FGFQN--E-----D----RTLW----------EATSTYV-----------------EMSP------------ 822 (954)
Q Consensus 801 --------~~~~~--~-----~----~~~~----------~~~~~~~-----------------~~sp------------ 822 (954)
+.... . . ...+ +....+. ...+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (295)
T PRK03592 139 AVRELFQALRSPGEGEEMVLEENVFIERVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVE 218 (295)
T ss_pred hHHHHHHHHhCcccccccccchhhHHhhcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhh
Confidence 00000 0 0 0000 0000000 0000
Q ss_pred --ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 823 --FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 823 --~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
...+.++++|+|+|||++|..++ +....++...+.. +.++.+++++||... .+..+.+.+.+.+|+.+.
T Consensus 219 ~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~~---~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~~~ 289 (295)
T PRK03592 219 EYAQWLATSDVPKLLINAEPGAILT--TGAIRDWCRSWPN---QLEITVFGAGLHFAQ-EDSPEEIGAAIAAWLRRL 289 (295)
T ss_pred HhHHHhccCCCCeEEEeccCCcccC--cHHHHHHHHHhhh---hcceeeccCcchhhh-hcCHHHHHHHHHHHHHHh
Confidence 01235678999999999999985 4555555444332 358889999999985 567788999999999875
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=127.25 Aligned_cols=269 Identities=16% Similarity=0.161 Sum_probs=166.6
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecC--CeEEEEEecCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN--STLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD--G~~l~~~~~~~~~ 267 (954)
.+....||+||+.|+..+ -+|...||-++ .....+...+.... +..+.|+|. +.-++..
T Consensus 177 Pis~~~fS~ds~~laT~s-------wsG~~kvW~~~--~~~~~~~l~gH~~~----v~~~~fhP~~~~~~lat~------ 237 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGS-------WSGLVKVWSVP--QCNLLQTLRGHTSR----VGAAVFHPVDSDLNLATA------ 237 (459)
T ss_pred cceeeEeecCCCeEEEee-------cCCceeEeecC--CcceeEEEeccccc----eeeEEEccCCCccceeee------
Confidence 677889999999999876 44566777554 44555555544433 778999998 4455544
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-ccccccccCCCCcEE
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-~~~~~~~~SpDGk~l 346 (954)
+.+ +...||.++-.-.+..++.. ..+..++|.|+|++|
T Consensus 238 ---------------s~D--------------------------gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L 276 (459)
T KOG0272|consen 238 ---------------SAD--------------------------GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFL 276 (459)
T ss_pred ---------------ccC--------------------------CceeeeccCCCcchhhhhcchhhheeeeecCCCcee
Confidence 111 33445555543345566666 788899999999999
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
+..+-+ ..-.+||+.++..-.+- .++..++.+++|.|||..++-- |
T Consensus 277 ~TasfD-------------~tWRlWD~~tk~ElL~Q------------EGHs~~v~~iaf~~DGSL~~tG------G--- 322 (459)
T KOG0272|consen 277 GTASFD-------------STWRLWDLETKSELLLQ------------EGHSKGVFSIAFQPDGSLAATG------G--- 322 (459)
T ss_pred eecccc-------------cchhhcccccchhhHhh------------cccccccceeEecCCCceeecc------C---
Confidence 998844 35568999865422111 1445678899999999843321 0
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCc
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDV 506 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~ 506 (954)
.+... .+||+ .+|..+-.|..+...+.++.|||+|..|+..+.++. .+||.+..... .-.+ ..+...+
T Consensus 323 --lD~~~--RvWDl--Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt--~kVWDLR~r~~---ly~i-pAH~nlV 390 (459)
T KOG0272|consen 323 --LDSLG--RVWDL--RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT--CKVWDLRMRSE---LYTI-PAHSNLV 390 (459)
T ss_pred --ccchh--heeec--ccCcEEEEecccccceeeEeECCCceEEeecCCCCc--EEEeeeccccc---ceec-ccccchh
Confidence 01222 45664 356666666777788899999999999999887765 67887765442 1111 2222222
Q ss_pred cCCCCCCCeeecc-CCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccC
Q 002194 507 YSDPGSPMMRRTS-TGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSD 585 (954)
Q Consensus 507 ~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 585 (954)
.. +.|+| .|.+|+...- ...+.+|...+...-+...+-.. .+++
T Consensus 391 S~------Vk~~p~~g~fL~Tasy---------------------D~t~kiWs~~~~~~~ksLaGHe~-------kV~s- 435 (459)
T KOG0272|consen 391 SQ------VKYSPQEGYFLVTASY---------------------DNTVKIWSTRTWSPLKSLAGHEG-------KVIS- 435 (459)
T ss_pred hh------eEecccCCeEEEEccc---------------------CcceeeecCCCcccchhhcCCcc-------ceEE-
Confidence 22 78998 5555555441 11266666665554333322211 1111
Q ss_pred CccccccccCCEEEEEE
Q 002194 586 QTEGDLYLNQLKILTSK 602 (954)
Q Consensus 586 ~~~~~~s~dg~~l~~~~ 602 (954)
.++|+|+..++...
T Consensus 436 ---~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 436 ---LDISPDSQAIATSS 449 (459)
T ss_pred ---EEeccCCceEEEec
Confidence 46888888776433
|
|
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.8e-12 Score=131.60 Aligned_cols=195 Identities=16% Similarity=0.106 Sum_probs=115.5
Q ss_pred cEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHH-HHH
Q 002194 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAA-VEE 749 (954)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~a-v~~ 749 (954)
|+||++||..... ..| ......|+ +||.|+. .+..|+|.+..+.......++++... +..
T Consensus 2 ~~vv~~hG~~~~~-----------~~~----~~~~~~L~-~~~~v~~---~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~ 62 (251)
T TIGR03695 2 PVLVFLHGFLGSG-----------ADW----QALIELLG-PHFRCLA---IDLPGHGSSQSPDEIERYDFEEAAQDILAT 62 (251)
T ss_pred CEEEEEcCCCCch-----------hhH----HHHHHHhc-ccCeEEE---EcCCCCCCCCCCCccChhhHHHHHHHHHHH
Confidence 6789999953211 111 13344555 8999999 56667777754322122233333333 444
Q ss_pred HHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC-----CC--------Cccc----------
Q 002194 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-----FG--------FQNE---------- 806 (954)
Q Consensus 750 l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-----~~--------~~~~---------- 806 (954)
+.+. .+.+++.++|||+||.+++.++.++|+.+++++++++........ .. +...
T Consensus 63 ~~~~--~~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (251)
T TIGR03695 63 LLDQ--LGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWY 140 (251)
T ss_pred HHHH--cCCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHh
Confidence 4443 245689999999999999999999999999999988653311000 00 0000
Q ss_pred ----cch---hhhc-----------------HHHHH------hcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHH
Q 002194 807 ----DRT---LWEA-----------------TSTYV------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (954)
Q Consensus 807 ----~~~---~~~~-----------------~~~~~------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (954)
... .... ...+. ..+....+.++++|+|+++|++|..++ ...++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~---~~~~~--- 214 (251)
T TIGR03695 141 QQPLFASQKNLPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV---QIAKE--- 214 (251)
T ss_pred cCceeeecccCChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH---HHHHH---
Confidence 000 0000 00000 011223456789999999999997642 33333
Q ss_pred HHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 857 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
+.....+++++.+|++||... .++.+.+...|.+||
T Consensus 215 -~~~~~~~~~~~~~~~~gH~~~-~e~~~~~~~~i~~~l 250 (251)
T TIGR03695 215 -MQKLLPNLTLVIIANAGHNIH-LENPEAFAKILLAFL 250 (251)
T ss_pred -HHhcCCCCcEEEEcCCCCCcC-ccChHHHHHHHHHHh
Confidence 333334578889999999874 455667777788776
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-10 Score=112.50 Aligned_cols=272 Identities=14% Similarity=0.146 Sum_probs=173.7
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..|++|...+ |.-.+--.+++ ..++....+||++.||-. +..+|.++|+.++...++......
T Consensus 20 hTIRfWqa~t----G~C~rTiqh~d-sqVNrLeiTpdk~~LAaa----------~~qhvRlyD~~S~np~Pv~t~e~h-- 82 (311)
T KOG0315|consen 20 HTIRFWQALT----GICSRTIQHPD-SQVNRLEITPDKKDLAAA----------GNQHVRLYDLNSNNPNPVATFEGH-- 82 (311)
T ss_pred ceeeeeehhc----CeEEEEEecCc-cceeeEEEcCCcchhhhc----------cCCeeEEEEccCCCCCceeEEecc--
Confidence 5899999865 44333222333 378889999999999875 377888899988877665443321
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeC
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD 322 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~ 322 (954)
+..+..+.|--||++.+..+ .+ ++-.||-+. .
T Consensus 83 ~kNVtaVgF~~dgrWMyTgs---------------------eD--------------------------gt~kIWdlR-~ 114 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGS---------------------ED--------------------------GTVKIWDLR-S 114 (311)
T ss_pred CCceEEEEEeecCeEEEecC---------------------CC--------------------------ceEEEEecc-C
Confidence 22267889999999999651 11 333344333 3
Q ss_pred CceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccC
Q 002194 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 323 G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g 400 (954)
-...++... ..+..+.+.|+-..|+.... .++|++||+..... .++...+ + ..
T Consensus 115 ~~~qR~~~~~spVn~vvlhpnQteLis~dq-------------sg~irvWDl~~~~c~~~liPe~---~---------~~ 169 (311)
T KOG0315|consen 115 LSCQRNYQHNSPVNTVVLHPNQTELISGDQ-------------SGNIRVWDLGENSCTHELIPED---D---------TS 169 (311)
T ss_pred cccchhccCCCCcceEEecCCcceEEeecC-------------CCcEEEEEccCCccccccCCCC---C---------cc
Confidence 333444433 67788889998776665542 23899999986533 2333211 1 23
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc---eEE---eecccccCceeeccCCceEEEEE
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP---EIL---HKLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~---~~l---~~~~~~~~~~~~spDg~~l~~~~ 474 (954)
+++++..|||+.++.. ..++..|+|++ ...... .++ ..+.+.+-...+|||+++|+..+
T Consensus 170 i~sl~v~~dgsml~a~-------------nnkG~cyvW~l--~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s 234 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAA-------------NNKGNCYVWRL--LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS 234 (311)
T ss_pred eeeEEEcCCCcEEEEe-------------cCCccEEEEEc--cCCCccccceEhhheecccceEEEEEECCCCcEEEeec
Confidence 4678899999987666 44678999996 332222 223 23445556679999999999988
Q ss_pred eccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeE
Q 002194 475 WYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFL 554 (954)
Q Consensus 475 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 554 (954)
.+++ ..||..+.- .+.....+....-+.. -.||.||++|+-... ....
T Consensus 235 sdkt--v~iwn~~~~---~kle~~l~gh~rWvWd------c~FS~dg~YlvTass---------------------d~~~ 282 (311)
T KOG0315|consen 235 SDKT--VKIWNTDDF---FKLELVLTGHQRWVWD------CAFSADGEYLVTASS---------------------DHTA 282 (311)
T ss_pred CCce--EEEEecCCc---eeeEEEeecCCceEEe------eeeccCccEEEecCC---------------------CCce
Confidence 7765 566665533 1222333333333333 568999999887762 1347
Q ss_pred EEEECCCCCeEEEeccC
Q 002194 555 DLFDINTGSKERIWESD 571 (954)
Q Consensus 555 ~~~d~~~g~~~~l~~~~ 571 (954)
.+||+..++..+.+..-
T Consensus 283 rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 283 RLWDLSAGKEVRQYQGH 299 (311)
T ss_pred eecccccCceeeecCCc
Confidence 88999988877766544
|
|
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=129.93 Aligned_cols=166 Identities=12% Similarity=0.087 Sum_probs=104.2
Q ss_pred HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEE
Q 002194 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (954)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (954)
..+|.|++ .+..|+|.+..... . ++...++.+.+. . .+++.++||||||.+++.++.++|++++++|+
T Consensus 28 ~~~~~vi~---~d~~G~G~s~~~~~---~---~~~~~~~~~~~~--~-~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il 95 (245)
T TIGR01738 28 SAHFTLHL---VDLPGHGRSRGFGP---L---SLADAAEAIAAQ--A-PDPAIWLGWSLGGLVALHIAATHPDRVRALVT 95 (245)
T ss_pred ccCeEEEE---ecCCcCccCCCCCC---c---CHHHHHHHHHHh--C-CCCeEEEEEcHHHHHHHHHHHHCHHhhheeeE
Confidence 46899999 56667777643221 1 222333333333 2 25899999999999999999999999999998
Q ss_pred eccCCCCCCC-CC--CCc------------cccc---hhhh----------c--H-------------------H---HH
Q 002194 790 RSGAYNRTLT-PF--GFQ------------NEDR---TLWE----------A--T-------------------S---TY 817 (954)
Q Consensus 790 ~~~~~~~~~~-~~--~~~------------~~~~---~~~~----------~--~-------------------~---~~ 817 (954)
+++....... .+ ... .... ..+. . . . .+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (245)
T TIGR01738 96 VASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPTARQDARALKQTLLARPTPNVQVLQAGLEIL 175 (245)
T ss_pred ecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchHHHHHHHHhhccCCCCHHHHHHHHHHh
Confidence 8764221100 00 000 0000 0000 0 0 0 00
Q ss_pred HhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 818 ~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
...+....+.++++|+|+++|++|..+| ....+.+.+.+. ++++.++|++||... .++...+.+.+.+|+
T Consensus 176 ~~~~~~~~l~~i~~Pvlii~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 176 ATVDLRQPLQNISVPFLRLYGYLDGLVP--AKVVPYLDKLAP----HSELYIFAKAAHAPF-LSHAEAFCALLVAFK 245 (245)
T ss_pred hcccHHHHHhcCCCCEEEEeecCCcccC--HHHHHHHHHhCC----CCeEEEeCCCCCCcc-ccCHHHHHHHHHhhC
Confidence 0111122456889999999999999998 777776766543 468889999999874 566778888888774
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=132.91 Aligned_cols=195 Identities=18% Similarity=0.120 Sum_probs=114.9
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh-----hHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR-----FVEQLVACAE 744 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~-----~~~~~~~D~~ 744 (954)
.|.||++||++.... .+ .......+.+.||.|+. .+.+|+|.+..... ......+|+.
T Consensus 25 ~~~vl~~hG~~g~~~-----------~~---~~~~~~~l~~~g~~vi~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 87 (288)
T TIGR01250 25 KIKLLLLHGGPGMSH-----------EY---LENLRELLKEEGREVIM---YDQLGCGYSDQPDDSDELWTIDYFVDELE 87 (288)
T ss_pred CCeEEEEcCCCCccH-----------HH---HHHHHHHHHhcCCEEEE---EcCCCCCCCCCCCcccccccHHHHHHHHH
Confidence 467888999642110 00 11223333445999999 55567777654311 1233344444
Q ss_pred HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC-----C--CCCcccc---------c
Q 002194 745 AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-----P--FGFQNED---------R 808 (954)
Q Consensus 745 ~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-----~--~~~~~~~---------~ 808 (954)
+. .+. .+.+++.++||||||.+++.++.++|++++++|+.+++...... . ..+.... .
T Consensus 88 ~~----~~~--~~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (288)
T TIGR01250 88 EV----REK--LGLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEAS 161 (288)
T ss_pred HH----HHH--cCCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhc
Confidence 33 333 23357999999999999999999999999999988764321100 0 0000000 0
Q ss_pred hhhhc---------------------------------HHHH---------------HhcCcccccCCCCCCEEEEEeCC
Q 002194 809 TLWEA---------------------------------TSTY---------------VEMSPFMSANKLKKPILLVHGEE 840 (954)
Q Consensus 809 ~~~~~---------------------------------~~~~---------------~~~sp~~~~~~~~~P~Lii~G~~ 840 (954)
..+.+ ...+ ..++....+.++++|+|+++|+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~ 241 (288)
T TIGR01250 162 GDYDNPEYQEAVEVFYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEF 241 (288)
T ss_pred cCcchHHHHHHHHHHHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCC
Confidence 00000 0000 00011123456889999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
|. ++ +.....+.+.+. .+++++++++||... .+....+.+.+.+||+
T Consensus 242 D~-~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 242 DT-MT--PEAAREMQELIA----GSRLVVFPDGSHMTM-IEDPEVYFKLLSDFIR 288 (288)
T ss_pred Cc-cC--HHHHHHHHHhcc----CCeEEEeCCCCCCcc-cCCHHHHHHHHHHHhC
Confidence 97 45 566666655543 347889999999875 4567788888888873
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-11 Score=134.68 Aligned_cols=175 Identities=15% Similarity=0.181 Sum_probs=107.1
Q ss_pred HCCcEEEEcCCCCCCCCCCcccchhh-----HHHHHHHHHHH-HHHHHHcCCCCCCcEE-EEeeChHHHHHHHHHHhCCC
Q 002194 710 ARGFAILGGPTTPIIGEGDEEANDRF-----VEQLVACAEAA-VEEVVRRGVAHPSKIA-VGGHSYGAFMTANLLAHAPH 782 (954)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~-----~~~~~~D~~~a-v~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~ 782 (954)
+++|.|++ .|..|+|.+..+... ....++++.+. +..+.+.-.+ +++. |+||||||.+|+.++.++|+
T Consensus 103 ~~~~~Via---~Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~~l~~~lgi--~~~~~lvG~SmGG~vAl~~A~~~P~ 177 (360)
T PRK06489 103 ASKYFIIL---PDGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQYRLVTEGLGV--KHLRLILGTSMGGMHAWMWGEKYPD 177 (360)
T ss_pred ccCCEEEE---eCCCCCCCCCCCCcCCCCCCCcccHHHHHHHHHHHHHHhcCC--CceeEEEEECHHHHHHHHHHHhCch
Confidence 67899999 666788877543210 01122333322 2223333223 4664 89999999999999999999
Q ss_pred cccEEEEeccCCCCC------C-----------CCC---CCcccc---c--------------------hhh-hc-----
Q 002194 783 LFCCGIARSGAYNRT------L-----------TPF---GFQNED---R--------------------TLW-EA----- 813 (954)
Q Consensus 783 ~~~a~v~~~~~~~~~------~-----------~~~---~~~~~~---~--------------------~~~-~~----- 813 (954)
+++++|++++..... . ..+ .+.... . ... ..
T Consensus 178 ~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (360)
T PRK06489 178 FMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQPPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLV 257 (360)
T ss_pred hhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHH
Confidence 999999887532100 0 000 000000 0 000 00
Q ss_pred -----------HHHHH-------hcCcccccCCCCCCEEEEEeCCCCCCCCchHHH--HHHHHHHHhCCCcEEEEEeCCC
Q 002194 814 -----------TSTYV-------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS--DRFFNALKGHGALCRLVILPFE 873 (954)
Q Consensus 814 -----------~~~~~-------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~--~~~~~~l~~~g~~~~~~~~~~~ 873 (954)
...+. ..+....+.+|++|+|+|+|++|..+| +..+ +++.+.+.. .+++++|++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~~D~~~p--~~~~~~~~la~~ip~----a~l~~i~~a 331 (360)
T PRK06489 258 DERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSADDERNP--PETGVMEAALKRVKH----GRLVLIPAS 331 (360)
T ss_pred HHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecCCCcccC--hhhHHHHHHHHhCcC----CeEEEECCC
Confidence 00010 112223456789999999999999988 7765 556555533 488999996
Q ss_pred ----CCcCCCcccHHHHHHHHHHHHHHh
Q 002194 874 ----SHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 874 ----~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
||... +..+.+.+.|.+||+++
T Consensus 332 ~~~~GH~~~--e~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 332 PETRGHGTT--GSAKFWKAYLAEFLAQV 357 (360)
T ss_pred CCCCCcccc--cCHHHHHHHHHHHHHhc
Confidence 99874 57888889999999865
|
|
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.8e-11 Score=131.49 Aligned_cols=207 Identities=13% Similarity=0.062 Sum_probs=128.6
Q ss_pred ceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC----
Q 002194 638 QKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG---- 712 (954)
Q Consensus 638 ~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G---- 712 (954)
..+.+++.+. -|.+...++|+|++|. .+ ++|+|+++||..+... .........+.++|
T Consensus 179 ~~~~~~~~S~~Lg~~r~v~VY~P~~y~-~~--~~PvlyllDG~~w~~~--------------~~~~~~ld~li~~g~i~P 241 (411)
T PRK10439 179 PAKEIIWKSERLGNSRRVWIYTTGDAA-PE--ERPLAILLDGQFWAES--------------MPVWPALDSLTHRGQLPP 241 (411)
T ss_pred ceEEEEEEccccCCceEEEEEECCCCC-CC--CCCEEEEEECHHhhhc--------------CCHHHHHHHHHHcCCCCc
Confidence 3456666654 4778899999999886 22 5999999999632110 00112344566677
Q ss_pred cEEEEcCCCCCCCCCCccc-chhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEE
Q 002194 713 FAILGGPTTPIIGEGDEEA-NDRFVEQLVACAEAAVEEVVRRG--VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~-~~~~~~~~~~D~~~av~~l~~~~--~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (954)
.+|+.++..+......... ...+...+.++++. ++.++. ..|+++.+|+|+||||+.|++++.++|++|.++++
T Consensus 242 ~ivV~id~~~~~~R~~el~~~~~f~~~l~~eLlP---~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s 318 (411)
T PRK10439 242 AVYLLIDAIDTTHRSQELPCNADFWLAVQQELLP---QVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLS 318 (411)
T ss_pred eEEEEECCCCcccccccCCchHHHHHHHHHHHHH---HHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEE
Confidence 3345544422211111111 22333334444444 444442 35788999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEE
Q 002194 790 RSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869 (954)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~ 869 (954)
++|.+-+... ......|- .+.+... ....-...++|.+|+.|..+ ....+++.+.|+.+|.++++.+
T Consensus 319 ~Sgs~ww~~~-----~~~~~~~l-~~~l~~~----~~~~~~lr~~i~~G~~E~~~---~~~~~~l~~~L~~~G~~~~~~~ 385 (411)
T PRK10439 319 QSGSFWWPHR-----GGQQEGVL-LEQLKAG----EVSARGLRIVLEAGRREPMI---MRANQALYAQLHPAGHSVFWRQ 385 (411)
T ss_pred eccceecCCc-----cCCchhHH-HHHHHhc----ccCCCCceEEEeCCCCCchH---HHHHHHHHHHHHHCCCcEEEEE
Confidence 9986421110 00000010 0111110 01112346889999998654 5778999999999999999999
Q ss_pred eCCCCCcCC
Q 002194 870 LPFESHGYA 878 (954)
Q Consensus 870 ~~~~~H~~~ 878 (954)
++| ||.+.
T Consensus 386 ~~G-GHd~~ 393 (411)
T PRK10439 386 VDG-GHDAL 393 (411)
T ss_pred CCC-CcCHH
Confidence 998 79763
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-10 Score=121.33 Aligned_cols=279 Identities=12% Similarity=0.125 Sum_probs=177.5
Q ss_pred HhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeee
Q 002194 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQ 183 (954)
Q Consensus 104 ~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt 183 (954)
+......++.++|+-||..||+...+ +.+.+|+. +| .....+.
T Consensus 231 s~~~nkdVT~L~Wn~~G~~LatG~~~---------------------------------G~~riw~~--~G--~l~~tl~ 273 (524)
T KOG0273|consen 231 SVPSNKDVTSLDWNNDGTLLATGSED---------------------------------GEARIWNK--DG--NLISTLG 273 (524)
T ss_pred cCCccCCcceEEecCCCCeEEEeecC---------------------------------cEEEEEec--Cc--hhhhhhh
Confidence 33445568899999999999998875 57889987 44 3333343
Q ss_pred cCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEec
Q 002194 184 GFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (954)
Q Consensus 184 ~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (954)
. +.+.+....|+-+|.+|+-.. -...+.++|.-+|+..+........ .-++.|-.+.+..-..
T Consensus 274 ~--HkgPI~slKWnk~G~yilS~~---------vD~ttilwd~~~g~~~q~f~~~s~~----~lDVdW~~~~~F~ts~-- 336 (524)
T KOG0273|consen 274 Q--HKGPIFSLKWNKKGTYILSGG---------VDGTTILWDAHTGTVKQQFEFHSAP----ALDVDWQSNDEFATSS-- 336 (524)
T ss_pred c--cCCceEEEEEcCCCCEEEecc---------CCccEEEEeccCceEEEeeeeccCC----ccceEEecCceEeecC--
Confidence 2 334789999999999999843 3456677788888887776555431 2367897666533322
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--CCceeEcCCC-ccccccccC
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPP-AVYTSLDPS 340 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~--~G~~~~l~~~-~~~~~~~~S 340 (954)
....|+++-+ ++....+... +.+..+.|.
T Consensus 337 ------------------------------------------------td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 337 ------------------------------------------------TDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred ------------------------------------------------CCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence 1123444444 4444444445 888899999
Q ss_pred CCCcEEEEEeecCCcccccccCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 341 pDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
|-|+.|+..+.+. ++.||... +.....+..+ ...+..+.|||+|...- -
T Consensus 369 ~tg~LLaS~SdD~-------------TlkiWs~~~~~~~~~l~~H-------------skei~t~~wsp~g~v~~----n 418 (524)
T KOG0273|consen 369 PTGSLLASCSDDG-------------TLKIWSMGQSNSVHDLQAH-------------SKEIYTIKWSPTGPVTS----N 418 (524)
T ss_pred CCCceEEEecCCC-------------eeEeeecCCCcchhhhhhh-------------ccceeeEeecCCCCccC----C
Confidence 9999999988543 78889855 3222222221 23345688999987211 0
Q ss_pred ccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002194 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 499 (954)
...+.....+.....|.+|++ ..+.....++++...+++++|||+|++|++.+-++. +.+.+..++ +...-.
T Consensus 419 ~~~~~~l~sas~dstV~lwdv--~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~----V~iws~~~~--~l~~s~ 490 (524)
T KOG0273|consen 419 PNMNLMLASASFDSTVKLWDV--ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC----VHIWSTKTG--KLVKSY 490 (524)
T ss_pred CcCCceEEEeecCCeEEEEEc--cCCceeEeeccCCCceEEEEecCCCcEEEecCCCCe----eEeccccch--heeEee
Confidence 001111122244567888886 455556677888999999999999999999865543 444555553 111111
Q ss_pred cCCCCCccCCCCCCCeeeccCCcEEEEEEe
Q 002194 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (954)
.....++. +.|+.+|..|.....
T Consensus 491 -~~~~~Ife------l~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 491 -QGTGGIFE------LCWNAAGDKLGACAS 513 (524)
T ss_pred -cCCCeEEE------EEEcCCCCEEEEEec
Confidence 11111222 899999988877763
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-10 Score=112.11 Aligned_cols=252 Identities=14% Similarity=0.102 Sum_probs=154.0
Q ss_pred eceEEEEccCCC-CCC-ceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCc
Q 002194 163 TGIGIHQLFPDG-KLG-QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI 240 (954)
Q Consensus 163 ~~l~l~~~~~~g-~~~-~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 240 (954)
..+.+|++..|. ..| ..++++++ ...+.....|+||.+.+-.+ -...|.++|+.+|+.++.+-.+..
T Consensus 38 k~ii~W~L~~dd~~~G~~~r~~~GH--sH~v~dv~~s~dg~~alS~s---------wD~~lrlWDl~~g~~t~~f~GH~~ 106 (315)
T KOG0279|consen 38 KTIIVWKLTSDDIKYGVPVRRLTGH--SHFVSDVVLSSDGNFALSAS---------WDGTLRLWDLATGESTRRFVGHTK 106 (315)
T ss_pred eEEEEEEeccCccccCceeeeeecc--ceEecceEEccCCceEEecc---------ccceEEEEEecCCcEEEEEEecCC
Confidence 467888886542 122 24566653 24789999999998765533 255777889999888777665554
Q ss_pred cccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEE
Q 002194 241 YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (954)
Q Consensus 241 ~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~ 320 (954)
. +-.+++++|.+.|+..+ ....|-+++
T Consensus 107 d----Vlsva~s~dn~qivSGS-------------------------------------------------rDkTiklwn 133 (315)
T KOG0279|consen 107 D----VLSVAFSTDNRQIVSGS-------------------------------------------------RDKTIKLWN 133 (315)
T ss_pred c----eEEEEecCCCceeecCC-------------------------------------------------Ccceeeeee
Confidence 3 67899999999998551 112355666
Q ss_pred e-CCceeEcCCC---ccccccccCCCCc--EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccc
Q 002194 321 L-DGTVKEIGPP---AVYTSLDPSPDEK--YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAF 394 (954)
Q Consensus 321 ~-~G~~~~l~~~---~~~~~~~~SpDGk--~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~ 394 (954)
. ++-...+... ..+..+.|||... .|+-.+ .++.+.+||+++-+.+.-..
T Consensus 134 t~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s-------------~DktvKvWnl~~~~l~~~~~----------- 189 (315)
T KOG0279|consen 134 TLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS-------------WDKTVKVWNLRNCQLRTTFI----------- 189 (315)
T ss_pred ecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc-------------CCceEEEEccCCcchhhccc-----------
Confidence 6 4322233322 5678899999853 333333 24589999999765443221
Q ss_pred cccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEE
Q 002194 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 395 ~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (954)
+....+..+++||||...++- +..+.+++||+ +.++.-.-......+.+++|||.--+|..+.
T Consensus 190 -gh~~~v~t~~vSpDGslcasG-------------gkdg~~~LwdL---~~~k~lysl~a~~~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 190 -GHSGYVNTVTVSPDGSLCASG-------------GKDGEAMLWDL---NEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred -cccccEEEEEECCCCCEEecC-------------CCCceEEEEEc---cCCceeEeccCCCeEeeEEecCCceeEeecc
Confidence 233455679999999977663 34668999997 3333322234455678999999987777654
Q ss_pred eccccceEEEEEcCCCCCCCcEEEecCCCCCc-----cCCCCCCCeeeccCCcEEEEEE
Q 002194 475 WYKTRRTRTWVISPGSKDVAPRILFDRSSEDV-----YSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 475 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~spdG~~l~~~~ 528 (954)
... ..|| |++++. .+.+...... .+.+.--.++||+||.+|+...
T Consensus 253 ~~s---IkIw--dl~~~~----~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 253 ATS---IKIW--DLESKA----VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred CCc---eEEE--eccchh----hhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 321 4444 444431 1111110000 0011111278999999988776
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-11 Score=136.05 Aligned_cols=169 Identities=17% Similarity=0.150 Sum_probs=104.0
Q ss_pred HHCCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccE
Q 002194 709 LARGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (954)
Q Consensus 709 a~~G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a 786 (954)
+.++|.|+. ++..|+|.+... ........+++. .+.+. ++..++.++|||+||.+++.++.++|+++++
T Consensus 154 l~~~~~v~~---~d~~g~G~s~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~ 224 (371)
T PRK14875 154 LAAGRPVIA---LDLPGHGASSKAVGAGSLDELAAAVL----AFLDA--LGIERAHLVGHSMGGAVALRLAARAPQRVAS 224 (371)
T ss_pred HhcCCEEEE---EcCCCCCCCCCCCCCCCHHHHHHHHH----HHHHh--cCCccEEEEeechHHHHHHHHHHhCchheeE
Confidence 446799999 666677776322 122233333333 33333 3556899999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCC----cc-----------------ccchhhh---c----------HHH---HH---------hc
Q 002194 787 GIARSGAYNRTLTPFGF----QN-----------------EDRTLWE---A----------TST---YV---------EM 820 (954)
Q Consensus 787 ~v~~~~~~~~~~~~~~~----~~-----------------~~~~~~~---~----------~~~---~~---------~~ 820 (954)
+|++++..........+ .. .....+. . ... +. ..
T Consensus 225 lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (371)
T PRK14875 225 LTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTRQMVEDLLKYKRLDGVDDALRALADALFAGGRQRV 304 (371)
T ss_pred EEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCHHHHHHHHHHhccccHHHHHHHHHHHhccCcccch
Confidence 99988753211000000 00 0000000 0 000 00 01
Q ss_pred CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 821 sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
+....+.++++|+|++||++|..+| +.++..++ ..+++.++|++||... .++...+.+.|.+||++
T Consensus 305 ~~~~~l~~i~~Pvlii~g~~D~~vp--~~~~~~l~-------~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 305 DLRDRLASLAIPVLVIWGEQDRIIP--AAHAQGLP-------DGVAVHVLPGAGHMPQ-MEAAADVNRLLAEFLGK 370 (371)
T ss_pred hHHHHHhcCCCCEEEEEECCCCccC--HHHHhhcc-------CCCeEEEeCCCCCChh-hhCHHHHHHHHHHHhcc
Confidence 1122456789999999999999998 77665442 2368889999999874 55666777777777754
|
|
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.3e-11 Score=118.91 Aligned_cols=226 Identities=18% Similarity=0.155 Sum_probs=140.0
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCC-
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG- 725 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G- 725 (954)
..|...+++||.|++.+. ..|+||++||+.+. ..++.+.+ .| -......||.|+.++..+..-
T Consensus 42 ~~g~~r~y~l~vP~g~~~----~apLvv~LHG~~~s---gag~~~~s--g~-------d~lAd~~gFlV~yPdg~~~~wn 105 (312)
T COG3509 42 VNGLKRSYRLYVPPGLPS----GAPLVVVLHGSGGS---GAGQLHGT--GW-------DALADREGFLVAYPDGYDRAWN 105 (312)
T ss_pred cCCCccceEEEcCCCCCC----CCCEEEEEecCCCC---hHHhhccc--ch-------hhhhcccCcEEECcCccccccC
Confidence 367889999999998532 25999999997432 22232221 11 223345899999975543321
Q ss_pred ---CCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCC-CCCCC
Q 002194 726 ---EGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY-NRTLT 799 (954)
Q Consensus 726 ---~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~-~~~~~ 799 (954)
.+..+.+. ...-.++..+.+.++.|..+.-||+.||+|.|.|.||.|+..+++.+|+.|.|+..+++.. +...
T Consensus 106 ~~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a- 184 (312)
T COG3509 106 ANGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVA- 184 (312)
T ss_pred CCcccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCcc-
Confidence 22221122 2234567788889999999989999999999999999999999999999999999998864 1110
Q ss_pred CCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHh-------------------
Q 002194 800 PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG------------------- 860 (954)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~------------------- 860 (954)
..... +..-...--..+|......=..| |-+|..|..|+ ..+..+.++.+..
T Consensus 185 ---~~~~r--p~~~m~~~G~~Dp~~p~~gG~~~--~g~g~~~~~v~--~~~~~~~Waa~ng~~~~p~~~~~~~~~~~~~~ 255 (312)
T COG3509 185 ---CTPPR--PVSVMAFHGTADPLNPYHGGGVP--IGRGQRDGVVS--AADLAARWAAVNGCQAGPDTAELPDVGDGTDY 255 (312)
T ss_pred ---cCCCC--chhHHHhcCCCCCCCCCCCCCcc--ccccccccccc--HHHHHHHHHHhcCCCCCCcccccCCCccccee
Confidence 00000 00000000001221111111123 77888888776 6666555565532
Q ss_pred ----CCCcEEEEEeCCCCCcCCCccc-----------HHHHHHHHHHHHHHhc
Q 002194 861 ----HGALCRLVILPFESHGYAARES-----------IMHVLWETDRWLQKYC 898 (954)
Q Consensus 861 ----~g~~~~~~~~~~~~H~~~~~~~-----------~~~~~~~i~~fl~~~l 898 (954)
.+.++++..+.+.||.+..... ..+..+.|-+||..+-
T Consensus 256 ~~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~~ 308 (312)
T COG3509 256 DTCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQHR 308 (312)
T ss_pred eccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhcc
Confidence 1235889999999998853111 1235677888988763
|
|
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.8e-12 Score=119.37 Aligned_cols=164 Identities=18% Similarity=0.213 Sum_probs=123.3
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCc---ccchhh-----HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH
Q 002194 704 SVLLWLARGFAILGGPTTPIIGEGDE---EANDRF-----VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (954)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~---~~~~~~-----~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 775 (954)
.+..++..||.|+.++.+...-+.-+ .....| .+....|+...++||..++ +..+|+++|++|||.++..
T Consensus 59 ~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv~ 136 (242)
T KOG3043|consen 59 GADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVVT 136 (242)
T ss_pred HHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEEEE
Confidence 45667789999999888543211111 111122 2345789999999999775 4579999999999999999
Q ss_pred HHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHH
Q 002194 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (954)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (954)
+.+..| .|.++++..|.+- + ..-+.++++|+|++.|+.|..+| +....++-
T Consensus 137 ~~~~~~-~f~a~v~~hps~~-------------------------d-~~D~~~vk~Pilfl~ae~D~~~p--~~~v~~~e 187 (242)
T KOG3043|consen 137 LSAKDP-EFDAGVSFHPSFV-------------------------D-SADIANVKAPILFLFAELDEDVP--PKDVKAWE 187 (242)
T ss_pred eeccch-hheeeeEecCCcC-------------------------C-hhHHhcCCCCEEEEeecccccCC--HHHHHHHH
Confidence 998886 7999988887421 1 12345678999999999999999 88888888
Q ss_pred HHHHhCC-CcEEEEEeCCCCCcCCC-------c---ccHHHHHHHHHHHHHHhc
Q 002194 856 NALKGHG-ALCRLVILPFESHGYAA-------R---ESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 856 ~~l~~~g-~~~~~~~~~~~~H~~~~-------~---~~~~~~~~~i~~fl~~~l 898 (954)
++++..- ...++.+|++.+|+|.. + ...++.++.++.||++|+
T Consensus 188 e~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 188 EKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred HHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 8888764 23578999999999863 1 124678889999999987
|
|
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-10 Score=125.08 Aligned_cols=173 Identities=16% Similarity=0.132 Sum_probs=104.4
Q ss_pred HHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEE
Q 002194 709 LARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (954)
Q Consensus 709 a~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (954)
..++|.|++ .+..|+|.+..+... ...+++..+.+..+++.. +.+++.++||||||.+++.++..+|++++++|
T Consensus 57 l~~~~~vi~---~D~~G~G~S~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lv 130 (286)
T PRK03204 57 LRDRFRCVA---PDYLGFGLSERPSGF-GYQIDEHARVIGEFVDHL--GLDRYLSMGQDWGGPISMAVAVERADRVRGVV 130 (286)
T ss_pred HhCCcEEEE---ECCCCCCCCCCCCcc-ccCHHHHHHHHHHHHHHh--CCCCEEEEEECccHHHHHHHHHhChhheeEEE
Confidence 456799999 666788877543221 122445555555555542 34689999999999999999999999999999
Q ss_pred EeccCCCCC-CC----------C----CCCcc-----cc----ch--hh--hcHHHHHh-----------------c---
Q 002194 789 ARSGAYNRT-LT----------P----FGFQN-----ED----RT--LW--EATSTYVE-----------------M--- 820 (954)
Q Consensus 789 ~~~~~~~~~-~~----------~----~~~~~-----~~----~~--~~--~~~~~~~~-----------------~--- 820 (954)
+.++..-.. .. . ..... .. .. .. +....+.. .
T Consensus 131 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (286)
T PRK03204 131 LGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLIPAGTEHRPSSAVMAHYRAVQPNAAARRGVAEMPKQILAA 210 (286)
T ss_pred EECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhccccccCCCCHHHHHHhcCCCCCHHHHHHHHHHHHhcchh
Confidence 876542100 00 0 00000 00 00 00 00000000 0
Q ss_pred Cc-ccc----cC--CCCCCEEEEEeCCCCCCCCchHH-HHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHH
Q 002194 821 SP-FMS----AN--KLKKPILLVHGEEDNNSGTLTMQ-SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDR 892 (954)
Q Consensus 821 sp-~~~----~~--~~~~P~Lii~G~~D~~v~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~ 892 (954)
.+ +.. +. .+++|+|+++|++|..++ +.. ++.+.+.+.. .++++++++||... .+..+.+.+.|.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~--~~~~~~~~~~~ip~----~~~~~i~~aGH~~~-~e~Pe~~~~~i~~ 283 (286)
T PRK03204 211 RPLLARLAREVPATLGTKPTLLVWGMKDVAFR--PKTILPRLRATFPD----HVLVELPNAKHFIQ-EDAPDRIAAAIIE 283 (286)
T ss_pred hHHHHHhhhhhhhhcCCCCeEEEecCCCcccC--cHHHHHHHHHhcCC----CeEEEcCCCccccc-ccCHHHHHHHHHH
Confidence 00 000 01 127999999999999875 443 4555554443 58889999999974 6777888888888
Q ss_pred HH
Q 002194 893 WL 894 (954)
Q Consensus 893 fl 894 (954)
||
T Consensus 284 ~~ 285 (286)
T PRK03204 284 RF 285 (286)
T ss_pred hc
Confidence 86
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-10 Score=112.53 Aligned_cols=270 Identities=14% Similarity=0.126 Sum_probs=183.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCcc---------ccccccceeeeeeecCCCCCCcceeeEeceEEEEccCC---CCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLE---------ELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPD---GKLG 177 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~---g~~~ 177 (954)
.+....||+|+++|+..+.++...+| .++-|-.++-.-.++|.++....++-++.--|++++.. |...
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce
Confidence 45677888888888888877554444 33345555555677888776665555566778888632 2222
Q ss_pred ceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEec-CCe
Q 002194 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN-NST 256 (954)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp-DG~ 256 (954)
..+.|.+++ .+.+...|-+|+ +|+.. +|....-++|+++|+..+.+...... +-.+..+| |++
T Consensus 137 v~r~l~gHt--gylScC~f~dD~-~ilT~---------SGD~TCalWDie~g~~~~~f~GH~gD----V~slsl~p~~~n 200 (343)
T KOG0286|consen 137 VSRELAGHT--GYLSCCRFLDDN-HILTG---------SGDMTCALWDIETGQQTQVFHGHTGD----VMSLSLSPSDGN 200 (343)
T ss_pred eeeeecCcc--ceeEEEEEcCCC-ceEec---------CCCceEEEEEcccceEEEEecCCccc----EEEEecCCCCCC
Confidence 345565543 578888998765 57663 34566667788898887776655544 66788889 888
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCC-C-cc
Q 002194 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-P-AV 333 (954)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~-~-~~ 333 (954)
.++.... ....+++|+ .|..++-.. + ..
T Consensus 201 tFvSg~c-------------------------------------------------D~~aklWD~R~~~c~qtF~ghesD 231 (343)
T KOG0286|consen 201 TFVSGGC-------------------------------------------------DKSAKLWDVRSGQCVQTFEGHESD 231 (343)
T ss_pred eEEeccc-------------------------------------------------ccceeeeeccCcceeEeecccccc
Confidence 7775411 112345566 665444443 3 78
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i 413 (954)
+..+.|-|+|-.++..+.+. ...+||+...+.-.+...+ ....|+.+++||-.|+.+
T Consensus 232 INsv~ffP~G~afatGSDD~-------------tcRlyDlRaD~~~a~ys~~----------~~~~gitSv~FS~SGRlL 288 (343)
T KOG0286|consen 232 INSVRFFPSGDAFATGSDDA-------------TCRLYDLRADQELAVYSHD----------SIICGITSVAFSKSGRLL 288 (343)
T ss_pred cceEEEccCCCeeeecCCCc-------------eeEEEeecCCcEEeeeccC----------cccCCceeEEEcccccEE
Confidence 88999999998888777443 7788999865433333322 122567899999999854
Q ss_pred eEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEE
Q 002194 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (954)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~ 484 (954)
+.- .....+.+||. ..+...-.|..++.++..+..+|||-.+...+|+.. .+||
T Consensus 289 fag-------------y~d~~c~vWDt--lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~--lriW 342 (343)
T KOG0286|consen 289 FAG-------------YDDFTCNVWDT--LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDST--LRIW 342 (343)
T ss_pred Eee-------------ecCCceeEeec--cccceEEEeeccCCeeEEEEECCCCcEEEecchhHh--eeec
Confidence 332 12346788985 677777788999999999999999999999998875 6666
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-10 Score=119.33 Aligned_cols=207 Identities=14% Similarity=0.109 Sum_probs=130.1
Q ss_pred EEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCC
Q 002194 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (954)
Q Consensus 642 ~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~ 721 (954)
+.+++..|. +.++++.|.+ ..+.|+||++||.... .+.+.......+..|+++||.|+. +
T Consensus 3 ~~l~~~~g~-~~~~~~~p~~-----~~~~~~VlllHG~g~~-----------~~~~~~~~~~la~~La~~Gy~Vl~---~ 62 (266)
T TIGR03101 3 FFLDAPHGF-RFCLYHPPVA-----VGPRGVVIYLPPFAEE-----------MNKSRRMVALQARAFAAGGFGVLQ---I 62 (266)
T ss_pred EEecCCCCc-EEEEEecCCC-----CCCceEEEEECCCccc-----------ccchhHHHHHHHHHHHHCCCEEEE---E
Confidence 455655554 6788887764 2246899999995210 011111111346678889999999 6
Q ss_pred CCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC
Q 002194 722 PIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (954)
Q Consensus 722 ~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~ 799 (954)
|..|+|.+... ........+|+..+++++.+++ ..+++++||||||.+++.++.++|+.++++|+.+|+.+....
T Consensus 63 Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~ 139 (266)
T TIGR03101 63 DLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQ 139 (266)
T ss_pred CCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHH
Confidence 66677877442 2234567899999999998764 358999999999999999999999999999999987652110
Q ss_pred CCC----------Cccccc----hh--------------h----hcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCc
Q 002194 800 PFG----------FQNEDR----TL--------------W----EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTL 847 (954)
Q Consensus 800 ~~~----------~~~~~~----~~--------------~----~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~ 847 (954)
-.. ...... .. + +-...+...+....+. ...++|++.-..+.--+ .
T Consensus 140 l~~~lrl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~-~ 217 (266)
T TIGR03101 140 LQQFLRLRLVARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVP-KNCPVHWFEVRPEEGAT-L 217 (266)
T ss_pred HHHHHHHHHHHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCC-CCCceEEEEeccccCCC-C
Confidence 000 000000 00 0 0011122222211111 14578888764332211 1
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002194 848 TMQSDRFFNALKGHGALCRLVILPFE 873 (954)
Q Consensus 848 ~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (954)
.....++.++++..|+.++...|++.
T Consensus 218 ~~~~~~l~~~~~~~g~~v~~~~~~~~ 243 (266)
T TIGR03101 218 SPVFSRLGEQWVQSGVEVTVDLVPGP 243 (266)
T ss_pred CHHHHHHHHHHHHcCCeEeeeecCCc
Confidence 45678899999999999999999986
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-09 Score=120.06 Aligned_cols=227 Identities=11% Similarity=0.131 Sum_probs=144.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|+--|.+|||.... . ++|-||++.. +.-.+....+-.
T Consensus 309 ~I~t~~~N~tGDWiA~g~~k--------------------------l------gQLlVweWqs-----EsYVlKQQgH~~ 351 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSK--------------------------L------GQLLVWEWQS-----ESYVLKQQGHSD 351 (893)
T ss_pred eeeEEEecccCCEEEEcCCc--------------------------c------ceEEEEEeec-----cceeeecccccc
Confidence 45677888889999997763 0 3677777732 223333221223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....+||||+.||... +...|-+||...|-....+..+... +..+.|+.+|+.++.++
T Consensus 352 ~i~~l~YSpDgq~iaTG~---------eDgKVKvWn~~SgfC~vTFteHts~----Vt~v~f~~~g~~llssS------- 411 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGA---------EDGKVKVWNTQSGFCFVTFTEHTSG----VTAVQFTARGNVLLSSS------- 411 (893)
T ss_pred ceeeEEECCCCcEEEecc---------CCCcEEEEeccCceEEEEeccCCCc----eEEEEEEecCCEEEEee-------
Confidence 788899999999999843 3556677787777665333323222 77899999999998771
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCC--ccccccccCCCCcE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP--AVYTSLDPSPDEKY 345 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~--~~~~~~~~SpDGk~ 345 (954)
-+ | .+-.+|+ .+ .-+.++.+ .....++..|-|..
T Consensus 412 --------------LD--------------------------G--tVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel 449 (893)
T KOG0291|consen 412 --------------LD--------------------------G--TVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL 449 (893)
T ss_pred --------------cC--------------------------C--eEEeeeecccceeeeecCCCceeeeEEEEcCCCCE
Confidence 11 2 2334455 33 33444444 44556666676876
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceEEE-eccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~-l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
+...+.+ ..+|++|++.+++... |..++ +.+..++|+|+|..|+-.
T Consensus 450 V~AG~~d------------~F~IfvWS~qTGqllDiLsGHE-------------gPVs~l~f~~~~~~LaS~-------- 496 (893)
T KOG0291|consen 450 VCAGAQD------------SFEIFVWSVQTGQLLDILSGHE-------------GPVSGLSFSPDGSLLASG-------- 496 (893)
T ss_pred EEeeccc------------eEEEEEEEeecCeeeehhcCCC-------------CcceeeEEccccCeEEec--------
Confidence 6655422 1289999999776544 33333 344678999999965543
Q ss_pred ccccccCCCeEEEEecCCCCC-CCceEEeecccccCceeeccCCceEEEEEec
Q 002194 425 AKVEVTPRDIIYTQQAEPVQG-EGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g-~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 476 (954)
+-...|.+|++ ++. ++.+.+ ....++-.++|+|||+.|+.+.-+
T Consensus 497 -----SWDkTVRiW~i--f~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 497 -----SWDKTVRIWDI--FSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLD 541 (893)
T ss_pred -----cccceEEEEEe--eccCceeeeE-eeccceeEEEEcCCCCeEEEEEec
Confidence 33556778886 333 333333 334456789999999999988644
|
|
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.5e-11 Score=131.08 Aligned_cols=181 Identities=12% Similarity=0.039 Sum_probs=113.3
Q ss_pred HHHHCCcEEEEcCCCCCCCCCCcccchh----hH------HHHHHHHHHHHHHHHHcCCCCCCc-EEEEeeChHHHHHHH
Q 002194 707 LWLARGFAILGGPTTPIIGEGDEEANDR----FV------EQLVACAEAAVEEVVRRGVAHPSK-IAVGGHSYGAFMTAN 775 (954)
Q Consensus 707 ~la~~G~~V~~~~~~~~~G~G~~~~~~~----~~------~~~~~D~~~av~~l~~~~~~d~~r-i~l~G~S~GG~~a~~ 775 (954)
.|...+|.|++ .+.+|+|.+..+.. +. ....+|+.+.+..|.+.-.+ ++ ..|+||||||++|+.
T Consensus 66 ~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lgi--~~~~~lvG~S~GG~va~~ 140 (339)
T PRK07581 66 ALDPEKYFIII---PNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEKFGI--ERLALVVGWSMGAQQTYH 140 (339)
T ss_pred ccCcCceEEEE---ecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHHhCC--CceEEEEEeCHHHHHHHH
Confidence 34457899999 66678887753321 10 11335555544445543223 57 478999999999999
Q ss_pred HHHhCCCcccEEEEeccCCCCCC----------------CCC---CCc--cc---------c------chhhh-------
Q 002194 776 LLAHAPHLFCCGIARSGAYNRTL----------------TPF---GFQ--NE---------D------RTLWE------- 812 (954)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~----------------~~~---~~~--~~---------~------~~~~~------- 812 (954)
++.++|++++.+|++++...... ..+ .+. .. . ...+.
T Consensus 141 ~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (339)
T PRK07581 141 WAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPAFNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAM 220 (339)
T ss_pred HHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhcccc
Confidence 99999999999998865321000 000 000 00 0 00000
Q ss_pred ---c-HH----H-------------------HHhc----------CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHH
Q 002194 813 ---A-TS----T-------------------YVEM----------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (954)
Q Consensus 813 ---~-~~----~-------------------~~~~----------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (954)
. .+ . +... +....+.++++|+|+++|++|..+| +..++.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~I~~PtLvI~G~~D~~~p--~~~~~~l~ 298 (339)
T PRK07581 221 GYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGSITAKTFVMPISTDLYFP--PEDCEAEA 298 (339)
T ss_pred ChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhcCCCCEEEEEeCCCCCCC--HHHHHHHH
Confidence 0 00 0 0000 1112345688999999999999998 88887776
Q ss_pred HHHHhCCCcEEEEEeCC-CCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 856 NALKGHGALCRLVILPF-ESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 856 ~~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
+.+.. .+++++++ +||... .+....+...+.+||.+++.
T Consensus 299 ~~ip~----a~l~~i~~~~GH~~~-~~~~~~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 299 ALIPN----AELRPIESIWGHLAG-FGQNPADIAFIDAALKELLA 338 (339)
T ss_pred HhCCC----CeEEEeCCCCCcccc-ccCcHHHHHHHHHHHHHHHh
Confidence 66533 48889998 899763 56667788899999998863
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-09 Score=115.90 Aligned_cols=266 Identities=15% Similarity=0.126 Sum_probs=160.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+..+.|+|||+.|++... ...|++++.++++........... +..+.|+|+++.|++..
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~---------~g~i~i~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~------ 70 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSG---------DGTIKVWDLETGELLRTLKGHTGP----VRDVAASADGTYLASGS------ 70 (289)
T ss_pred CCEEEEEEcCCCCEEEEeec---------CcEEEEEEeeCCCcEEEEecCCcc----eeEEEECCCCCEEEEEc------
Confidence 46888999999999998642 456777777666433322222221 45789999998888761
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCC-ccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~ 345 (954)
....|+++++ ++ ....+... ..+..+.|+|+++.
T Consensus 71 -------------------------------------------~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (289)
T cd00200 71 -------------------------------------------SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107 (289)
T ss_pred -------------------------------------------CCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCE
Confidence 1234777777 43 34444444 56788999999877
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
++..... +.+.+|++...+ ...+..+. ..+..+.|+|+++.++..
T Consensus 108 ~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~-------- 153 (289)
T cd00200 108 LSSSSRD-------------KTIKVWDVETGKCLTTLRGHT-------------DWVNSVAFSPDGTFVASS-------- 153 (289)
T ss_pred EEEecCC-------------CeEEEEECCCcEEEEEeccCC-------------CcEEEEEEcCcCCEEEEE--------
Confidence 7666522 389999998443 33333211 234678999997654443
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~ 504 (954)
...+.+.+|++ ..+.....+......+..+.|+|+++.|++.... ..+.+++...+ ...........
T Consensus 154 -----~~~~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----~~i~i~d~~~~--~~~~~~~~~~~ 220 (289)
T cd00200 154 -----SQDGTIKLWDL--RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD----GTIKLWDLSTG--KCLGTLRGHEN 220 (289)
T ss_pred -----cCCCcEEEEEc--cccccceeEecCccccceEEECCCcCEEEEecCC----CcEEEEECCCC--ceecchhhcCC
Confidence 22457888886 2233344455555578889999999988887652 24666666553 22222212211
Q ss_pred CccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEecc
Q 002194 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMS 584 (954)
Q Consensus 505 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 584 (954)
.+.. +.|+|++.+++... ....|++||+.+++.......... .+.
T Consensus 221 ~i~~------~~~~~~~~~~~~~~---------------------~~~~i~i~~~~~~~~~~~~~~~~~----~i~---- 265 (289)
T cd00200 221 GVNS------VAFSPDGYLLASGS---------------------EDGTIRVWDLRTGECVQTLSGHTN----SVT---- 265 (289)
T ss_pred ceEE------EEEcCCCcEEEEEc---------------------CCCcEEEEEcCCceeEEEccccCC----cEE----
Confidence 2222 77899876665543 122489999987665544432211 111
Q ss_pred CCccccccccCCEEEEE
Q 002194 585 DQTEGDLYLNQLKILTS 601 (954)
Q Consensus 585 ~~~~~~~s~dg~~l~~~ 601 (954)
...|+++++.++..
T Consensus 266 ---~~~~~~~~~~l~~~ 279 (289)
T cd00200 266 ---SLAWSPDGKRLASG 279 (289)
T ss_pred ---EEEECCCCCEEEEe
Confidence 14577777665543
|
|
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.1e-11 Score=126.42 Aligned_cols=190 Identities=11% Similarity=0.008 Sum_probs=115.1
Q ss_pred cEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 002194 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEV 750 (954)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l 750 (954)
|.||++||.+.... .| . .....| +..|.|++ .|..|+|.+.....+ .++++ ++.+
T Consensus 14 ~~ivllHG~~~~~~-----------~w---~-~~~~~L-~~~~~vi~---~Dl~G~G~S~~~~~~---~~~~~---~~~l 68 (256)
T PRK10349 14 VHLVLLHGWGLNAE-----------VW---R-CIDEEL-SSHFTLHL---VDLPGFGRSRGFGAL---SLADM---AEAV 68 (256)
T ss_pred CeEEEECCCCCChh-----------HH---H-HHHHHH-hcCCEEEE---ecCCCCCCCCCCCCC---CHHHH---HHHH
Confidence 56899999632111 11 1 223334 45699999 677788877543221 12222 2333
Q ss_pred HHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC---CCCCc-----------cccch---hh--
Q 002194 751 VRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---PFGFQ-----------NEDRT---LW-- 811 (954)
Q Consensus 751 ~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---~~~~~-----------~~~~~---~~-- 811 (954)
.+. ..+++.++||||||.+++.++.++|++++.+|++++....... ..... ..... .+
T Consensus 69 ~~~---~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (256)
T PRK10349 69 LQQ---APDKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLA 145 (256)
T ss_pred Hhc---CCCCeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHH
Confidence 332 2468999999999999999999999999999988763211000 00000 00000 00
Q ss_pred ----------hcH----------------------HHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHH
Q 002194 812 ----------EAT----------------------STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (954)
Q Consensus 812 ----------~~~----------------------~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~ 859 (954)
... ..+...+....+.++++|+|+++|++|..+| .+.+..+.+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~i~ 223 (256)
T PRK10349 146 LQTMGTETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVP--RKVVPMLDKLWP 223 (256)
T ss_pred HHHccCchHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCC--HHHHHHHHHhCC
Confidence 000 0001112223456788999999999999988 766665555443
Q ss_pred hCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 860 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+.++.++|++||... .++.+.+.+.+.+|-+
T Consensus 224 ----~~~~~~i~~~gH~~~-~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 224 ----HSESYIFAKAAHAPF-ISHPAEFCHLLVALKQ 254 (256)
T ss_pred ----CCeEEEeCCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 358899999999874 5777788888877743
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-09 Score=120.43 Aligned_cols=290 Identities=14% Similarity=0.169 Sum_probs=155.5
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..|+++.+..+ .++...+.............++||++.|+.+... ....+....|.++.++|+...+......+
T Consensus 13 ~gI~~~~~d~~--~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~---~~~~g~v~~~~i~~~~g~L~~~~~~~~~g- 86 (345)
T PF10282_consen 13 GGIYVFRFDEE--TGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEG---SGDSGGVSSYRIDPDTGTLTLLNSVPSGG- 86 (345)
T ss_dssp TEEEEEEEETT--TTEEEEEEEEEESSSECCEEE-TTSSEEEEEETT---SSTTTEEEEEEEETTTTEEEEEEEEEESS-
T ss_pred CcEEEEEEcCC--CCCceEeeeecCCCCCceEEEEeCCCEEEEEEcc---ccCCCCEEEEEECCCcceeEEeeeeccCC-
Confidence 36888888322 2444434322233467888999999877665421 11345566677776667766654333110
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
.....++.+|||+.|+.+. |+.+.+..+++
T Consensus 87 -~~p~~i~~~~~g~~l~van------------------------------------------------y~~g~v~v~~l~ 117 (345)
T PF10282_consen 87 -SSPCHIAVDPDGRFLYVAN------------------------------------------------YGGGSVSVFPLD 117 (345)
T ss_dssp -SCEEEEEECTTSSEEEEEE------------------------------------------------TTTTEEEEEEEC
T ss_pred -CCcEEEEEecCCCEEEEEE------------------------------------------------ccCCeEEEEEcc
Confidence 0023567789999999871 12334555555
Q ss_pred -CCceeEcC--------------CC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce--EEEecc
Q 002194 322 -DGTVKEIG--------------PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCD 383 (954)
Q Consensus 322 -~G~~~~l~--------------~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~--~~~l~~ 383 (954)
+|...... .. .....+.++|||++++...... ..|++++++... ......
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~------------D~v~~~~~~~~~~~l~~~~~ 185 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA------------DRVYVYDIDDDTGKLTPVDS 185 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT------------TEEEEEEE-TTS-TEEEEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC------------CEEEEEEEeCCCceEEEeec
Confidence 45333221 01 2334678999999998765332 278888887433 333211
Q ss_pred CCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEee-----ccc--
Q 002194 384 LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-----LDL-- 456 (954)
Q Consensus 384 ~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-----~~~-- 456 (954)
... ....|++.++|+|||+.++.. .+. .+.|.++++++ ..+..+.+.. ...
T Consensus 186 ~~~---------~~G~GPRh~~f~pdg~~~Yv~-~e~-----------s~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 186 IKV---------PPGSGPRHLAFSPDGKYAYVV-NEL-----------SNTVSVFDYDP-SDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp EEC---------STTSSEEEEEE-TTSSEEEEE-ETT-----------TTEEEEEEEET-TTTEEEEEEEEESCETTSCS
T ss_pred ccc---------ccCCCCcEEEEcCCcCEEEEe-cCC-----------CCcEEEEeecc-cCCceeEEEEeeeccccccc
Confidence 111 112577899999999865443 322 34666666521 2333333311 111
Q ss_pred --ccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCC--CCCccCCCCCCCeeeccCCcEEEEEEeecc
Q 002194 457 --RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS--SEDVYSDPGSPMMRRTSTGTYVIAKIKKEN 532 (954)
Q Consensus 457 --~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~spdG~~l~~~~~~~~ 532 (954)
....+.+||||++|+.+. +......+|.++..++ ....+.... ...... +.++|||++|+.....
T Consensus 244 ~~~~~~i~ispdg~~lyvsn-r~~~sI~vf~~d~~~g--~l~~~~~~~~~G~~Pr~------~~~s~~g~~l~Va~~~-- 312 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSN-RGSNSISVFDLDPATG--TLTLVQTVPTGGKFPRH------FAFSPDGRYLYVANQD-- 312 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEE-CTTTEEEEEEECTTTT--TEEEEEEEEESSSSEEE------EEE-TTSSEEEEEETT--
T ss_pred cCCceeEEEecCCCEEEEEe-ccCCEEEEEEEecCCC--ceEEEEEEeCCCCCccE------EEEeCCCCEEEEEecC--
Confidence 234589999999877764 4333355666655554 333322111 111111 7789999999877521
Q ss_pred CCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEe
Q 002194 533 DEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (954)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 568 (954)
++.-.++.+|.++|..+.+-
T Consensus 313 ----------------s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 313 ----------------SNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp ----------------TTEEEEEEEETTTTEEEEEE
T ss_pred ----------------CCeEEEEEEeCCCCcEEEec
Confidence 12334666777888766554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.9e-11 Score=111.79 Aligned_cols=210 Identities=15% Similarity=0.120 Sum_probs=137.9
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
....+.++...+..+-+.+..- +..-++|++||.- . +...-+....+..++..||.++.
T Consensus 9 ~~~~ivi~n~~ne~lvg~lh~t--------gs~e~vvlcHGfr---------S----~Kn~~~~~~vA~~~e~~gis~fR 67 (269)
T KOG4667|consen 9 IAQKIVIPNSRNEKLVGLLHET--------GSTEIVVLCHGFR---------S----HKNAIIMKNVAKALEKEGISAFR 67 (269)
T ss_pred eeeEEEeccCCCchhhcceecc--------CCceEEEEeeccc---------c----ccchHHHHHHHHHHHhcCceEEE
Confidence 3456677777777666644432 2256899999941 0 11111223456667789999999
Q ss_pred cCCCCCCCCCCcccchhh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 718 GPTTPIIGEGDEEANDRF--VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~--~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
+|+.|.|++...-.+ +..+.+|+..+++++..... .--+|.|||-||.+++..+.++++ +.-+|..+|-++
T Consensus 68 ---fDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~nr---~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRyd 140 (269)
T KOG4667|consen 68 ---FDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNSNR---VVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYD 140 (269)
T ss_pred ---EEecCCCCcCCccccCcccchHHHHHHHHHHhccCce---EEEEEEeecCccHHHHHHHHhhcC-chheEEcccccc
Confidence 888999988664222 34567999999999976422 124799999999999999999966 778888888776
Q ss_pred CCCC--------------CCCCcc------ccchhhhcHHHHHhcC--cccccC--CCCCCEEEEEeCCCCCCCCchHHH
Q 002194 796 RTLT--------------PFGFQN------EDRTLWEATSTYVEMS--PFMSAN--KLKKPILLVHGEEDNNSGTLTMQS 851 (954)
Q Consensus 796 ~~~~--------------~~~~~~------~~~~~~~~~~~~~~~s--p~~~~~--~~~~P~Lii~G~~D~~v~~~~~~~ 851 (954)
.... .-+|.+ .....|.........+ -..... ..+||+|-+||..|.+|| .+++
T Consensus 141 l~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVP--ve~A 218 (269)
T KOG4667|consen 141 LKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVP--VEDA 218 (269)
T ss_pred hhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceee--chhH
Confidence 3211 001111 0111121111111111 111122 246899999999999999 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCCcc
Q 002194 852 DRFFNALKGHGALCRLVILPFESHGYAARE 881 (954)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (954)
.++.+.+..+ ++.++||++|.++..+
T Consensus 219 kefAk~i~nH----~L~iIEgADHnyt~~q 244 (269)
T KOG4667|consen 219 KEFAKIIPNH----KLEIIEGADHNYTGHQ 244 (269)
T ss_pred HHHHHhccCC----ceEEecCCCcCccchh
Confidence 9998887764 8899999999997544
|
|
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=119.14 Aligned_cols=228 Identities=17% Similarity=0.152 Sum_probs=139.2
Q ss_pred EEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC
Q 002194 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (954)
Q Consensus 643 ~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (954)
.++..||..+...+..++. ....|+||.+||-. |+. .+.+.......+.++||.|++ +.
T Consensus 53 ~v~~pdg~~~~ldw~~~p~-----~~~~P~vVl~HGL~-----------G~s--~s~y~r~L~~~~~~rg~~~Vv---~~ 111 (345)
T COG0429 53 RLETPDGGFIDLDWSEDPR-----AAKKPLVVLFHGLE-----------GSS--NSPYARGLMRALSRRGWLVVV---FH 111 (345)
T ss_pred EEEcCCCCEEEEeeccCcc-----ccCCceEEEEeccC-----------CCC--cCHHHHHHHHHHHhcCCeEEE---Ee
Confidence 4555666655555554422 11269999999942 111 112233456667789999999 55
Q ss_pred CCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC--cccEEEEeccCCCCCC
Q 002194 723 IIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSGAYNRTL 798 (954)
Q Consensus 723 ~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~~~~~~~ 798 (954)
.+|++.+.. +.-+.....+|+..++++++++. -+.++.++|.|+||.|-+...+...+ .+.|+++++..+|...
T Consensus 112 ~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~--~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~ 189 (345)
T COG0429 112 FRGCSGEANTSPRLYHSGETEDIRFFLDWLKARF--PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEA 189 (345)
T ss_pred cccccCCcccCcceecccchhHHHHHHHHHHHhC--CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHH
Confidence 556655532 33444556799999999999864 35689999999999655555554322 3455555554333110
Q ss_pred ------CCCC--------------------------Cccc-------cchhhh--------------cHHHHHhcCcccc
Q 002194 799 ------TPFG--------------------------FQNE-------DRTLWE--------------ATSTYVEMSPFMS 825 (954)
Q Consensus 799 ------~~~~--------------------------~~~~-------~~~~~~--------------~~~~~~~~sp~~~ 825 (954)
..+. .... .++.|+ ..+.|...|.+..
T Consensus 190 ~~~~l~~~~s~~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~ 269 (345)
T COG0429 190 CAYRLDSGFSLRLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPL 269 (345)
T ss_pred HHHHhcCchhhhhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhcccccc
Confidence 0000 0000 011221 2466778899999
Q ss_pred cCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHh-CCCcEEEEEeCCCCCcCC-C-cc-cHH-HHHHHHHHHHHHhcc
Q 002194 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG-HGALCRLVILPFESHGYA-A-RE-SIM-HVLWETDRWLQKYCV 899 (954)
Q Consensus 826 ~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~H~~~-~-~~-~~~-~~~~~i~~fl~~~l~ 899 (954)
+.+|.+|+||||..+|++++ ...- ..... ....+.+.+-+..||.-. . .. ... -.-+++.+||+.++.
T Consensus 270 L~~Ir~PtLii~A~DDP~~~--~~~i----P~~~~~~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~~ 342 (345)
T COG0429 270 LPKIRKPTLIINAKDDPFMP--PEVI----PKLQEMLNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFLE 342 (345)
T ss_pred ccccccceEEEecCCCCCCC--hhhC----CcchhcCCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHHh
Confidence 99999999999999999987 4221 11122 345688889998899532 1 11 222 334578999998763
|
|
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=128.88 Aligned_cols=170 Identities=19% Similarity=0.170 Sum_probs=107.9
Q ss_pred HHCCcEEEEcCCCCCCCCCCcccch-h-hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccE
Q 002194 709 LARGFAILGGPTTPIIGEGDEEAND-R-FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (954)
Q Consensus 709 a~~G~~V~~~~~~~~~G~G~~~~~~-~-~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a 786 (954)
.+++|.|++ .|..|+|.+..+. . ......+|+.+.++.+. .+++.++|||+||++++.++.++|+++++
T Consensus 109 l~~~~~v~~---~D~~G~G~S~~~~~~~~~~~~a~~l~~~i~~~~------~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~ 179 (354)
T PLN02578 109 LAKKYKVYA---LDLLGFGWSDKALIEYDAMVWRDQVADFVKEVV------KEPAVLVGNSLGGFTALSTAVGYPELVAG 179 (354)
T ss_pred HhcCCEEEE---ECCCCCCCCCCcccccCHHHHHHHHHHHHHHhc------cCCeEEEEECHHHHHHHHHHHhChHhcce
Confidence 356799999 5666777775432 1 12333455555555542 35799999999999999999999999999
Q ss_pred EEEeccCCCCCCCC------------CC---Ccccc--------------------------chhhhc------------
Q 002194 787 GIARSGAYNRTLTP------------FG---FQNED--------------------------RTLWEA------------ 813 (954)
Q Consensus 787 ~v~~~~~~~~~~~~------------~~---~~~~~--------------------------~~~~~~------------ 813 (954)
+|++++........ .. +.... ...+.+
T Consensus 180 lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (354)
T PLN02578 180 VALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAKQPSRIESVLKSVYKDKSNVDDYLVESI 259 (354)
T ss_pred EEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCcccCCHHHHHHH
Confidence 99887532110000 00 00000 000000
Q ss_pred ---------HHHHH-----------hcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002194 814 ---------TSTYV-----------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (954)
Q Consensus 814 ---------~~~~~-----------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (954)
.+.+. ..+....+.++++|+|+++|++|..|| ...+.++.+.+.. .+++++ ++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~--~~~~~~l~~~~p~----a~l~~i-~~ 332 (354)
T PLN02578 260 TEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVG--PAKAEKIKAFYPD----TTLVNL-QA 332 (354)
T ss_pred HhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCC--HHHHHHHHHhCCC----CEEEEe-CC
Confidence 00000 001122356789999999999999998 8888777666532 477777 57
Q ss_pred CCcCCCcccHHHHHHHHHHHHH
Q 002194 874 SHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 874 ~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
||... .+....+.+.|.+|+.
T Consensus 333 GH~~~-~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 333 GHCPH-DEVPEQVNKALLEWLS 353 (354)
T ss_pred CCCcc-ccCHHHHHHHHHHHHh
Confidence 99874 6777888899999975
|
|
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.7e-11 Score=130.89 Aligned_cols=239 Identities=20% Similarity=0.283 Sum_probs=156.1
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcc-cHHHHHHHHCCcEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIG-STSVLLWLARGFAI 715 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~G~~V 715 (954)
+....+.++.+||++|.+.||+|++ .++.|+++..+-.|...... ..+.... ......|+++||+|
T Consensus 17 ~~~~~v~V~MRDGvrL~~dIy~Pa~-----~g~~Pvll~~~~~Py~k~~~--------~~~~~~~~~p~~~~~aa~GYav 83 (563)
T COG2936 17 YIERDVMVPMRDGVRLAADIYRPAG-----AGPLPVLLSRTRLPYRKRNG--------TFGPQLSALPQPAWFAAQGYAV 83 (563)
T ss_pred eeeeeeeEEecCCeEEEEEEEccCC-----CCCCceeEEeeccccccccc--------cCcchhhcccccceeecCceEE
Confidence 4456788999999999999999986 35699999887333322210 0000000 00113689999999
Q ss_pred EEcCCCCCCCCCCcccchhhHH-HHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCC
Q 002194 716 LGGPTTPIIGEGDEEANDRFVE-QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (954)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~-~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (954)
+. .+.+|.|.|++.-.... ++.+|..+.|+||.++++.+ .+|+.+|.||+|+..+++|+..|.-.||++...+..
T Consensus 84 V~---qDvRG~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~ 159 (563)
T COG2936 84 VN---QDVRGRGGSEGVFDPESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLV 159 (563)
T ss_pred EE---ecccccccCCcccceeccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccc
Confidence 99 67778888877533333 58999999999999999876 699999999999999999999999999999988876
Q ss_pred CCCCC--------------CCC-----Ccc-----c------------------------cchhhh------c---HHHH
Q 002194 795 NRTLT--------------PFG-----FQN-----E------------------------DRTLWE------A---TSTY 817 (954)
Q Consensus 795 ~~~~~--------------~~~-----~~~-----~------------------------~~~~~~------~---~~~~ 817 (954)
|.... .|. ... . ...+|. . .+.+
T Consensus 160 D~y~d~~~~~G~~~~~~~~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~ddfW 239 (563)
T COG2936 160 DRYRDDAFYGGGAELNFNLGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRDDFW 239 (563)
T ss_pred cccccccccCcchhhhhhHHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCccchh
Confidence 62110 000 000 0 000000 0 0112
Q ss_pred HhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCccc-----HHHHHHHHHH
Q 002194 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES-----IMHVLWETDR 892 (954)
Q Consensus 818 ~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~-----~~~~~~~i~~ 892 (954)
.+.+-.....++++|+|++.|-.|.. ...+.++|..++.. +..+++-|- .|....... .....+...+
T Consensus 240 ~~~~~~~d~~~i~vP~L~i~gW~D~~----l~~~~~~~~~~~~r--~~~lvvgPw-~H~~~~~~~~~~~y~~~al~~~~~ 312 (563)
T COG2936 240 RRGDRVADLSKIKVPALVIGGWSDGY----LHTAIKLFAFLRSR--PVKLVVGPW-THGGPEWEGPGKDYGATALSWQDD 312 (563)
T ss_pred hccCcccccccCCCcEEEEccccccc----ccchHHHhhhcccC--CceeEEccc-ccCCCcccccccchhhhhhhhhHh
Confidence 33344556678899999999999975 45677788887764 356666664 565422222 2333444556
Q ss_pred HHHHhcc
Q 002194 893 WLQKYCV 899 (954)
Q Consensus 893 fl~~~l~ 899 (954)
||+.++.
T Consensus 313 ~l~~~~~ 319 (563)
T COG2936 313 FLDAYLD 319 (563)
T ss_pred hhhHhhh
Confidence 6655554
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-09 Score=117.76 Aligned_cols=226 Identities=18% Similarity=0.216 Sum_probs=147.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc--eeecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
.+..++|+--|.||||... ...+|-+++-.+.. .+|-..... +..++.||||++|+....
T Consensus 309 ~I~t~~~N~tGDWiA~g~~--------klgQLlVweWqsEsYVlKQQgH~~~------i~~l~YSpDgq~iaTG~e---- 370 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCS--------KLGQLLVWEWQSESYVLKQQGHSDR------ITSLAYSPDGQLIATGAE---- 370 (893)
T ss_pred eeeEEEecccCCEEEEcCC--------ccceEEEEEeeccceeeeccccccc------eeeEEECCCCcEEEeccC----
Confidence 6888999999999999542 24455555544322 122111111 668999999999996511
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCC-ccccccccCCCCc
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEK 344 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk 344 (954)
.+.+-++|. .| -....+++ ..++.+.|+.+|+
T Consensus 371 ---------------------------------------------DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~ 405 (893)
T KOG0291|consen 371 ---------------------------------------------DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN 405 (893)
T ss_pred ---------------------------------------------CCcEEEEeccCceEEEEeccCCCceEEEEEEecCC
Confidence 123456666 55 34455666 7889999999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
.|+.++.+ +.+..||+.. ...|..+... |+.| .-++--|.|. |++. ...
T Consensus 406 ~llssSLD-------------GtVRAwDlkRYrNfRTft~P~-----p~Qf-------scvavD~sGe-lV~A-G~~--- 455 (893)
T KOG0291|consen 406 VLLSSSLD-------------GTVRAWDLKRYRNFRTFTSPE-----PIQF-------SCVAVDPSGE-LVCA-GAQ--- 455 (893)
T ss_pred EEEEeecC-------------CeEEeeeecccceeeeecCCC-----ceee-------eEEEEcCCCC-EEEe-ecc---
Confidence 99988854 4899999984 4556655532 1111 1233344454 3333 111
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCC
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 503 (954)
..-.|++|.+ .+|.....|.++++.+.+++|+|+|..|+..+|+++ .++|.+=...+..++..+.
T Consensus 456 -------d~F~IfvWS~--qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT--VRiW~if~s~~~vEtl~i~---- 520 (893)
T KOG0291|consen 456 -------DSFEIFVWSV--QTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT--VRIWDIFSSSGTVETLEIR---- 520 (893)
T ss_pred -------ceEEEEEEEe--ecCeeeehhcCCCCcceeeEEccccCeEEeccccce--EEEEEeeccCceeeeEeec----
Confidence 1236899986 344445666889999999999999999999999987 7888775554323333332
Q ss_pred CCccCCCCCCCeeeccCCcEEEEEEe
Q 002194 504 EDVYSDPGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (954)
.++.. ++|+|||+.|+....
T Consensus 521 sdvl~------vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 521 SDVLA------VSFRPDGKELAVATL 540 (893)
T ss_pred cceeE------EEEcCCCCeEEEEEe
Confidence 22222 889999999998874
|
|
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.8e-12 Score=129.90 Aligned_cols=159 Identities=19% Similarity=0.267 Sum_probs=104.4
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 002194 704 SVLLWLARGFAILGGPTTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (954)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 779 (954)
.+..| ++||.|++ .+..|+|.+.... .......+|+.++++.+ ..+++.++|||+||.+++.++.+
T Consensus 17 ~~~~l-~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~lvG~S~Gg~~a~~~a~~ 86 (228)
T PF12697_consen 17 LAEAL-ARGYRVIA---FDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDAL------GIKKVILVGHSMGGMIALRLAAR 86 (228)
T ss_dssp HHHHH-HTTSEEEE---EECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHT------TTSSEEEEEETHHHHHHHHHHHH
T ss_pred HHHHH-hCCCEEEE---EecCCccccccccccCCcchhhhhhhhhhccccc------ccccccccccccccccccccccc
Confidence 45555 58999999 5666788775532 22344555665555443 22689999999999999999999
Q ss_pred CCCcccEEEEeccCCCCCCCC--C---CCcc---------cc---chh---hhc-----------HHH--------HHhc
Q 002194 780 APHLFCCGIARSGAYNRTLTP--F---GFQN---------ED---RTL---WEA-----------TST--------YVEM 820 (954)
Q Consensus 780 ~p~~~~a~v~~~~~~~~~~~~--~---~~~~---------~~---~~~---~~~-----------~~~--------~~~~ 820 (954)
+|++++++|+++|........ . .+.. .. ... +.. .+. +...
T Consensus 87 ~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
T PF12697_consen 87 YPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIRSSRRALAEYLRSNLWQA 166 (228)
T ss_dssp SGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeecccccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999876421100 0 0000 00 000 000 000 0112
Q ss_pred CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 002194 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 821 sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
+....+.++++|+++++|++|..++ .+..+++.+.+ .+++++++|++||...
T Consensus 167 ~~~~~~~~~~~pvl~i~g~~D~~~~--~~~~~~~~~~~----~~~~~~~~~~~gH~~~ 218 (228)
T PF12697_consen 167 DLSEALPRIKVPVLVIHGEDDPIVP--PESAEELADKL----PNAELVVIPGAGHFLF 218 (228)
T ss_dssp HHHHHHHGSSSEEEEEEETTSSSSH--HHHHHHHHHHS----TTEEEEEETTSSSTHH
T ss_pred cccccccccCCCeEEeecCCCCCCC--HHHHHHHHHHC----CCCEEEEECCCCCccH
Confidence 3334567789999999999999987 66666666554 3479999999999863
|
... |
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.1e-10 Score=122.11 Aligned_cols=193 Identities=13% Similarity=0.155 Sum_probs=121.4
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch------hhHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND------RFVEQLVACA 743 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~------~~~~~~~~D~ 743 (954)
.|.||++||.+.... .| . ..+..| +.+|.|++ .+..|+|.+..+. .......+|+
T Consensus 127 ~~~ivllHG~~~~~~-----------~w---~-~~~~~L-~~~~~Via---~DlpG~G~S~~p~~~~~~~ys~~~~a~~l 187 (383)
T PLN03084 127 NPPVLLIHGFPSQAY-----------SY---R-KVLPVL-SKNYHAIA---FDWLGFGFSDKPQPGYGFNYTLDEYVSSL 187 (383)
T ss_pred CCeEEEECCCCCCHH-----------HH---H-HHHHHH-hcCCEEEE---ECCCCCCCCCCCcccccccCCHHHHHHHH
Confidence 478999999642110 11 1 223334 56899999 6777888875432 1244556666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC--CCCC------------Ccc----
Q 002194 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL--TPFG------------FQN---- 805 (954)
Q Consensus 744 ~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~--~~~~------------~~~---- 805 (954)
.+.++.+ ..+++.|+|||+||.+++.++.++|++++++|++++...... .+.. +..
T Consensus 188 ~~~i~~l------~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~ 261 (383)
T PLN03084 188 ESLIDEL------KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLR 261 (383)
T ss_pred HHHHHHh------CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHH
Confidence 6665554 235799999999999999999999999999999997642110 0000 000
Q ss_pred ----------------ccchhhhc------------HHHHHhcC-cc-------c---ccCCCCCCEEEEEeCCCCCCCC
Q 002194 806 ----------------EDRTLWEA------------TSTYVEMS-PF-------M---SANKLKKPILLVHGEEDNNSGT 846 (954)
Q Consensus 806 ----------------~~~~~~~~------------~~~~~~~s-p~-------~---~~~~~~~P~Lii~G~~D~~v~~ 846 (954)
+....+.. ...+..+. .. . ...++++|+|+++|+.|..++
T Consensus 262 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~- 340 (383)
T PLN03084 262 ASDKALTSCGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLN- 340 (383)
T ss_pred HHhhhhcccCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcC-
Confidence 00000000 00001100 00 0 013468999999999999987
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
....+++.+.. +.++.++|+++|... .+..+.+.+.|.+||.
T Consensus 341 -~~~~~~~a~~~-----~a~l~vIp~aGH~~~-~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 341 -YDGVEDFCKSS-----QHKLIELPMAGHHVQ-EDCGEELGGIISGILS 382 (383)
T ss_pred -HHHHHHHHHhc-----CCeEEEECCCCCCcc-hhCHHHHHHHHHHHhh
Confidence 77666665542 358889999999874 5777888888888875
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-10 Score=131.14 Aligned_cols=148 Identities=20% Similarity=0.293 Sum_probs=91.2
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEEC------CC--Cce--------eecccCCCccccccccceeEe
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV------DT--GKA--------RPLFQSPDIYLNAIFDNFVWV 252 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~------~~--g~~--------~~lt~~~~~~~~~~~~~~~ws 252 (954)
+.+..++|||||+++|+.+ ++....||-.+. -+ |.. ..+..... ..+.++.|+
T Consensus 70 ~sv~CVR~S~dG~~lAsGS-------DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~----~DV~Dv~Ws 138 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGS-------DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD----SDVLDVNWS 138 (942)
T ss_pred CceeEEEECCCCCeEeecc-------CcceEEEeeecccCCcccccccccccccceeeEEEEEecCC----CccceeccC
Confidence 3688889999999999954 223444555552 10 111 11111111 126789999
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCC
Q 002194 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGP 330 (954)
Q Consensus 253 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~ 330 (954)
||+.+++.. +. ...|.+++. +.+ .+.+..
T Consensus 139 p~~~~lvS~---------------------s~----------------------------DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 139 PDDSLLVSV---------------------SL----------------------------DNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred CCccEEEEe---------------------cc----------------------------cceEEEEccccceeeeeeec
Confidence 999999866 11 123556666 554 333433
Q ss_pred C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeecc
Q 002194 331 P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS 408 (954)
Q Consensus 331 ~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wsp 408 (954)
. ..+-++.|.|=||++|..+.++ .+.+|.+.. +-.+.++. +..+- ......+.++|||
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDr-------------tikvwrt~dw~i~k~It~-pf~~~------~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDR-------------TLKVWRTSDWGIEKSITK-PFEES------PLTTFFLRLSWSP 229 (942)
T ss_pred ccccccceEECCccCeeeeecCCc-------------eEEEEEcccceeeEeecc-chhhC------CCcceeeecccCC
Confidence 4 7788999999999999998654 888998664 33444444 22110 1112235789999
Q ss_pred CCCCceEE
Q 002194 409 DKPSTLYW 416 (954)
Q Consensus 409 Dg~~i~~~ 416 (954)
||+.|+..
T Consensus 230 DG~~las~ 237 (942)
T KOG0973|consen 230 DGHHLASP 237 (942)
T ss_pred CcCeecch
Confidence 99987764
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.9e-10 Score=117.82 Aligned_cols=254 Identities=15% Similarity=0.177 Sum_probs=158.7
Q ss_pred eceEEEEccCCCCCCceeeeecCC-CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFP-DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~-~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
..+.|+.+ ||...+ .|+.+- ....+....|+|+|+..+|++. -..-+|.+|+.+.+..++-...+..
T Consensus 235 ~~lrifqv--DGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~--------rrky~ysyDle~ak~~k~~~~~g~e 302 (514)
T KOG2055|consen 235 GTLRIFQV--DGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSG--------RRKYLYSYDLETAKVTKLKPPYGVE 302 (514)
T ss_pred CcEEEEEe--cCccCh--hheeeeeccCccceeeecCCCceEEEecc--------cceEEEEeeccccccccccCCCCcc
Confidence 57788888 653322 333221 1226778899999996666543 2567899999998887775543321
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
...+..+..|||++.|++.. ..+.|+++..
T Consensus 303 -~~~~e~FeVShd~~fia~~G-------------------------------------------------~~G~I~lLha 332 (514)
T KOG2055|consen 303 -EKSMERFEVSHDSNFIAIAG-------------------------------------------------NNGHIHLLHA 332 (514)
T ss_pred -cchhheeEecCCCCeEEEcc-------------------------------------------------cCceEEeehh
Confidence 22366889999999998761 2346777777
Q ss_pred -CCce-eEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccc
Q 002194 322 -DGTV-KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVR 398 (954)
Q Consensus 322 -~G~~-~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~ 398 (954)
+++. ..+.-.+.+.+++||.||+.|+.+... ++||+||+....+ ++..... .
T Consensus 333 kT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~-------------GeV~v~nl~~~~~~~rf~D~G-~----------- 387 (514)
T KOG2055|consen 333 KTKELITSFKIEGVVSDFTFSSDSKELLASGGT-------------GEVYVWNLRQNSCLHRFVDDG-S----------- 387 (514)
T ss_pred hhhhhhheeeeccEEeeEEEecCCcEEEEEcCC-------------ceEEEEecCCcceEEEEeecC-c-----------
Confidence 6642 223333788899999999998887633 3899999986543 3322211 0
Q ss_pred cCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCC-CCCCCceEEe---ecccccCceeeccCCceEEEEE
Q 002194 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEP-VQGEGPEILH---KLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 399 ~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~l~---~~~~~~~~~~~spDg~~l~~~~ 474 (954)
....++.-|++|..++.- +..+.|-+|+.+. ..+..++++. .....+.++.|++|++.|+.++
T Consensus 388 v~gts~~~S~ng~ylA~G-------------S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 388 VHGTSLCISLNGSYLATG-------------SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred cceeeeeecCCCceEEec-------------cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhh
Confidence 122467888999855443 3355555665211 2344555553 3344678899999999999887
Q ss_pred eccccceEEEEEcCCCCCCCcEEEecCC-----CCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 475 WYKTRRTRTWVISPGSKDVAPRILFDRS-----SEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 475 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.......+|..++..+ +..+-+ ...+.. +.|||.|.++++..
T Consensus 455 ~~~knalrLVHvPS~T------VFsNfP~~n~~vg~vtc------~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 455 RVKKNALRLVHVPSCT------VFSNFPTSNTKVGHVTC------MAFSPNSGYLAVGN 501 (514)
T ss_pred hccccceEEEecccee------eeccCCCCCCcccceEE------EEecCCCceEEeec
Confidence 6554335565554332 221111 111122 78999999998875
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.5e-09 Score=113.77 Aligned_cols=263 Identities=14% Similarity=0.102 Sum_probs=137.9
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECC-CCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-TGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~-~g~~~~lt~~~~~~ 241 (954)
..|.+|++.++| ..+.+..++.+......++||||++|+.... . ...|..++++ .|+...+......
T Consensus 12 ~~I~~~~~~~~g---~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~------~--~~~i~~~~~~~~g~l~~~~~~~~~- 79 (330)
T PRK11028 12 QQIHVWNLNHEG---ALTLLQVVDVPGQVQPMVISPDKRHLYVGVR------P--EFRVLSYRIADDGALTFAAESPLP- 79 (330)
T ss_pred CCEEEEEECCCC---ceeeeeEEecCCCCccEEECCCCCEEEEEEC------C--CCcEEEEEECCCCceEEeeeecCC-
Confidence 478899985433 2233322333335677899999998766432 1 3445444443 4443322211111
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
.....++++|||+.|+.+.. ....|..+++
T Consensus 80 --~~p~~i~~~~~g~~l~v~~~------------------------------------------------~~~~v~v~~~ 109 (330)
T PRK11028 80 --GSPTHISTDHQGRFLFSASY------------------------------------------------NANCVSVSPL 109 (330)
T ss_pred --CCceEEEECCCCCEEEEEEc------------------------------------------------CCCeEEEEEE
Confidence 01347889999999987611 1223555555
Q ss_pred --CCcee---EcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEeccCCCcccCCccc
Q 002194 322 --DGTVK---EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAF 394 (954)
Q Consensus 322 --~G~~~---~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l~~~~~~~~~p~~~ 394 (954)
+|... ..... ......+++|||+++++..... ..|.+||++. +.......... ..+
T Consensus 110 ~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~------------~~v~v~d~~~~g~l~~~~~~~~--~~~--- 172 (330)
T PRK11028 110 DKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKE------------DRIRLFTLSDDGHLVAQEPAEV--TTV--- 172 (330)
T ss_pred CCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCC------------CEEEEEEECCCCcccccCCCce--ecC---
Confidence 34221 11111 2345567999999998776432 3899999974 32221100000 000
Q ss_pred cccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec---c------cccCceeecc
Q 002194 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL---D------LRYGGISWCD 465 (954)
Q Consensus 395 ~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~---~------~~~~~~~~sp 465 (954)
...+++.++|+|||+.++.. +. ..+.|.+|++++ .+++.+.+... . .....+.++|
T Consensus 173 --~g~~p~~~~~~pdg~~lyv~-~~-----------~~~~v~v~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 173 --EGAGPRHMVFHPNQQYAYCV-NE-----------LNSSVDVWQLKD-PHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred --CCCCCceEEECCCCCEEEEE-ec-----------CCCEEEEEEEeC-CCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 01345789999999966554 21 245777777621 12333322111 0 0112477999
Q ss_pred CCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCC-CccCCCCCCCeeeccCCcEEEEEE
Q 002194 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE-DVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
||++|+.+ +.......+|.++.+++ ..+.+-..... ... .+.++|||++|+...
T Consensus 238 dg~~lyv~-~~~~~~I~v~~i~~~~~--~~~~~~~~~~~~~p~------~~~~~~dg~~l~va~ 292 (330)
T PRK11028 238 DGRHLYAC-DRTASLISVFSVSEDGS--VLSFEGHQPTETQPR------GFNIDHSGKYLIAAG 292 (330)
T ss_pred CCCEEEEe-cCCCCeEEEEEEeCCCC--eEEEeEEEeccccCC------ceEECCCCCEEEEEE
Confidence 99988776 33332355565655543 11211111111 111 178999999988765
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-08 Score=109.06 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=55.5
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe---ecccccCceeeccCCceEEEEEec
Q 002194 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---KLDLRYGGISWCDDSLALVYESWY 476 (954)
Q Consensus 400 g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~---~~~~~~~~~~~spDg~~l~~~~~~ 476 (954)
-++.+.|||||++.+-. +..+.++++|= .+|.+...|. .+.+.+..++||||+++++..+.+
T Consensus 192 FV~~VRysPDG~~Fat~-------------gsDgki~iyDG--ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD 256 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATA-------------GSDGKIYIYDG--KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD 256 (603)
T ss_pred ceeeEEECCCCCeEEEe-------------cCCccEEEEcC--CCccEEEEecCCCCccccEEEEEECCCCceEEEecCC
Confidence 45678899999976554 45668999982 4455555665 456778889999999999998877
Q ss_pred cccceEEEEEcCCC
Q 002194 477 KTRRTRTWVISPGS 490 (954)
Q Consensus 477 ~~~~~~l~~~d~~~ 490 (954)
+. .+||.+....
T Consensus 257 kt--~KIWdVs~~s 268 (603)
T KOG0318|consen 257 KT--IKIWDVSTNS 268 (603)
T ss_pred ce--EEEEEeeccc
Confidence 65 7788877653
|
|
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-10 Score=125.99 Aligned_cols=67 Identities=19% Similarity=0.077 Sum_probs=52.8
Q ss_pred ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEE-eCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI-LPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
.+.+|++|+|+|+|+.|..+| +..++++.+.+......++++. ++++||... .+..+.+.+.+.+||
T Consensus 283 ~l~~I~~P~Lvi~G~~D~~~p--~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~-le~p~~~~~~l~~FL 350 (351)
T TIGR01392 283 ALSRIKAPFLVVSITSDWLFP--PAESRELAKALPAAGLRVTYVEIESPYGHDAF-LVETDQVEELIRGFL 350 (351)
T ss_pred HHhhCCCCEEEEEeCCccccC--HHHHHHHHHHHhhcCCceEEEEeCCCCCcchh-hcCHHHHHHHHHHHh
Confidence 456788999999999999998 8999999998877644444444 468999874 566777888888886
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-09 Score=107.66 Aligned_cols=234 Identities=12% Similarity=0.103 Sum_probs=145.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..+.+|+||++.+..+.+ ..+++||+.+ | ...+++-+++ .
T Consensus 65 ~v~dv~~s~dg~~alS~swD---------------------------------~~lrlWDl~~-g--~~t~~f~GH~--~ 106 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFALSASWD---------------------------------GTLRLWDLAT-G--ESTRRFVGHT--K 106 (315)
T ss_pred EecceEEccCCceEEecccc---------------------------------ceEEEEEecC-C--cEEEEEEecC--C
Confidence 56788899999888877775 5899999965 2 3345565543 4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCC--eEEEEEecCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS--TLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG--~~l~~~~~~~~~ 267 (954)
.+..+++|||.++|+..++ ...|-++++.|+....+....+..+ +.-+.|+|.. -+|+.+
T Consensus 107 dVlsva~s~dn~qivSGSr---------DkTiklwnt~g~ck~t~~~~~~~~W---VscvrfsP~~~~p~Ivs~------ 168 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSR---------DKTIKLWNTLGVCKYTIHEDSHREW---VSCVRFSPNESNPIIVSA------ 168 (315)
T ss_pred ceEEEEecCCCceeecCCC---------cceeeeeeecccEEEEEecCCCcCc---EEEEEEcCCCCCcEEEEc------
Confidence 7899999999999998543 5677777887776666655542222 7788999985 344422
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCC-ceeEcC--CCccccccccCCCCc
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEIG--PPAVYTSLDPSPDEK 344 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G-~~~~l~--~~~~~~~~~~SpDGk 344 (954)
+ ....+-++|+.+ +.+... ..+.+..+++||||.
T Consensus 169 ---------------s----------------------------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs 205 (315)
T KOG0279|consen 169 ---------------S----------------------------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS 205 (315)
T ss_pred ---------------c----------------------------CCceEEEEccCCcchhhccccccccEEEEEECCCCC
Confidence 1 112344556633 333322 227778899999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
.+++... ++++.+||++.++. +...+.. .-+.++.|+|+--.|... .
T Consensus 206 lcasGgk-------------dg~~~LwdL~~~k~--lysl~a~-----------~~v~sl~fspnrywL~~a---t---- 252 (315)
T KOG0279|consen 206 LCASGGK-------------DGEAMLWDLNEGKN--LYSLEAF-----------DIVNSLCFSPNRYWLCAA---T---- 252 (315)
T ss_pred EEecCCC-------------CceEEEEEccCCce--eEeccCC-----------CeEeeEEecCCceeEeec---c----
Confidence 9887442 34899999995432 2222211 234689999965332222 1
Q ss_pred ccccccCCCeEEEEecCCCCCCC-ceEEe----e-----cccccCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEG-PEILH----K-----LDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~-~~~l~----~-----~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
...|-+|++ +++. ...|. . .+-..-+++||+||..|+..-.++. .++|.+.
T Consensus 253 -------~~sIkIwdl---~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~--irv~qv~ 313 (315)
T KOG0279|consen 253 -------ATSIKIWDL---ESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV--IRVWQVA 313 (315)
T ss_pred -------CCceEEEec---cchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc--EEEEEee
Confidence 123666665 3222 22221 1 1223346899999999987654443 6676653
|
|
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-10 Score=129.41 Aligned_cols=175 Identities=14% Similarity=0.084 Sum_probs=110.3
Q ss_pred HHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEeeChHHHHHHHHHHhCCCcccE
Q 002194 708 WLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSK-IAVGGHSYGAFMTANLLAHAPHLFCC 786 (954)
Q Consensus 708 la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~r-i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (954)
|.+.+|.|+++ |.+|+|.+...........+|+.+.++.+ +-++ +.++||||||++++.++.++|+++++
T Consensus 95 L~~~~~~Vi~~---Dl~G~g~s~~~~~~~~~~a~dl~~ll~~l------~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~ 165 (343)
T PRK08775 95 LDPARFRLLAF---DFIGADGSLDVPIDTADQADAIALLLDAL------GIARLHAFVGYSYGALVGLQFASRHPARVRT 165 (343)
T ss_pred cCccccEEEEE---eCCCCCCCCCCCCCHHHHHHHHHHHHHHc------CCCcceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 33568999994 44566655332222344566666555544 2234 57999999999999999999999999
Q ss_pred EEEeccCCCCCCCC--CC------------------------------Ccc-c-cchhhh------------cHH-----
Q 002194 787 GIARSGAYNRTLTP--FG------------------------------FQN-E-DRTLWE------------ATS----- 815 (954)
Q Consensus 787 ~v~~~~~~~~~~~~--~~------------------------------~~~-~-~~~~~~------------~~~----- 815 (954)
+|++++........ +. +.. . ....+. ...
T Consensus 166 LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (343)
T PRK08775 166 LVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAEDYLDA 245 (343)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHHHHHH
Confidence 99998643210000 00 000 0 000000 000
Q ss_pred ----HHHhcCc-------------ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC-CCCcC
Q 002194 816 ----TYVEMSP-------------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF-ESHGY 877 (954)
Q Consensus 816 ----~~~~~sp-------------~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~ 877 (954)
.....++ ...+.++++|+|+++|++|..+| +..+.++.+.+.. ..+++++++ +||..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p--~~~~~~~~~~i~p---~a~l~~i~~~aGH~~ 320 (343)
T PRK08775 246 AGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVP--LADLVELAEGLGP---RGSLRVLRSPYGHDA 320 (343)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeC--HHHHHHHHHHcCC---CCeEEEEeCCccHHH
Confidence 0000000 01246788999999999999998 8888887776632 358889985 89987
Q ss_pred CCcccHHHHHHHHHHHHHHh
Q 002194 878 AARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 878 ~~~~~~~~~~~~i~~fl~~~ 897 (954)
. .+..+.+.+.+.+||.+.
T Consensus 321 ~-lE~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 321 F-LKETDRIDAILTTALRST 339 (343)
T ss_pred H-hcCHHHHHHHHHHHHHhc
Confidence 4 567788889999998763
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-08 Score=102.76 Aligned_cols=253 Identities=15% Similarity=0.183 Sum_probs=160.8
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+....||+||..++.++. ...|.++|...|+..+.......+ +.-+.|......+.+++
T Consensus 15 ~~i~sl~fs~~G~~litss~---------dDsl~LYd~~~g~~~~ti~skkyG----~~~~~Fth~~~~~i~sS------ 75 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSE---------DDSLRLYDSLSGKQVKTINSKKYG----VDLACFTHHSNTVIHSS------ 75 (311)
T ss_pred CceeEEEecCCCCEEEEecC---------CCeEEEEEcCCCceeeEeeccccc----ccEEEEecCCceEEEcc------
Confidence 46888999999999988552 447777888777766665555432 66777886665555541
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC--ccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~--~~~~~~~~SpDGk~ 345 (954)
+ . ....|..+++ +.+-.+...+ ..+.++..||-+..
T Consensus 76 ---------------t-----------------k---------~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~ 114 (311)
T KOG1446|consen 76 ---------------T-----------------K---------EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDT 114 (311)
T ss_pred ---------------C-----------------C---------CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCe
Confidence 1 1 1234667788 6654444444 78889999998877
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
.+-++.+ ..|.+||+...+..-+.... +..-.+|.|.| ++|.+.
T Consensus 115 FlS~S~D-------------~tvrLWDlR~~~cqg~l~~~--------------~~pi~AfDp~G--LifA~~------- 158 (311)
T KOG1446|consen 115 FLSSSLD-------------KTVRLWDLRVKKCQGLLNLS--------------GRPIAAFDPEG--LIFALA------- 158 (311)
T ss_pred EEecccC-------------CeEEeeEecCCCCceEEecC--------------CCcceeECCCC--cEEEEe-------
Confidence 7766644 38999999865443333221 22346799988 444421
Q ss_pred cccccCCCeEEEEecCCCCCCCceEE--e-ecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCC
Q 002194 426 KVEVTPRDIIYTQQAEPVQGEGPEIL--H-KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l--~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 502 (954)
.+.+.|-++|+.-.+.+.-... . ........+.|||||+.|+.+.+. ..++++|.-.|. ...-+...
T Consensus 159 ----~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~----s~~~~lDAf~G~--~~~tfs~~ 228 (311)
T KOG1446|consen 159 ----NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA----SFIYLLDAFDGT--VKSTFSGY 228 (311)
T ss_pred ----cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC----CcEEEEEccCCc--EeeeEeec
Confidence 2234677777633344433333 2 123344678999999999998654 458889987763 22222222
Q ss_pred CCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccC
Q 002194 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
..... . .-...|+|||+.+.-.. +..+|++|++++|++...+...
T Consensus 229 ~~~~~-~--~~~a~ftPds~Fvl~gs---------------------~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 229 PNAGN-L--PLSATFTPDSKFVLSGS---------------------DDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred cCCCC-c--ceeEEECCCCcEEEEec---------------------CCCcEEEEEcCCCcEeeEecCC
Confidence 11100 0 01157999999988776 2235999999999988888765
|
|
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.7e-11 Score=126.99 Aligned_cols=214 Identities=26% Similarity=0.351 Sum_probs=121.8
Q ss_pred CeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCC-cc-cHHHHHHHHCC----cEEEEcCCCC
Q 002194 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR-IG-STSVLLWLARG----FAILGGPTTP 722 (954)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~la~~G----~~V~~~~~~~ 722 (954)
|..+..++|+|++|++.+ ++|+|+++||.. .+.. .. ......++..| .+++.++..+
T Consensus 5 g~~~~~~VylP~~y~~~~--~~PvlylldG~~---------------~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~ 67 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSK--PYPVLYLLDGQS---------------GWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGD 67 (251)
T ss_dssp TEEEEEEEEECTTGGTTT--TEEEEEEESHTT---------------HHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSS
T ss_pred CCeEEEEEEECCCCCCCC--CCEEEEEccCCc---------------cccccchHHHHHHHHHHhCCCCceEEEEEeccc
Confidence 678899999999984444 699999999930 0100 00 11222234443 3444422212
Q ss_pred CC-CCCC--------cc-----cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEE
Q 002194 723 II-GEGD--------EE-----ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (954)
Q Consensus 723 ~~-G~G~--------~~-----~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (954)
.. .++. .. ....+.....+ +.+.++.++..+++++.+|+|+||||+.|+.++.++|+.|.+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~ 144 (251)
T PF00756_consen 68 NSRFYTSWYLPAGSSRRADDSGGGDAYETFLTE---ELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVI 144 (251)
T ss_dssp TSSTTSBTTSSBCTTCBCTSTTTHHHHHHHHHT---HHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEE
T ss_pred ccccccccccccccccccccCCCCcccceehhc---cchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCcccccccc
Confidence 11 1100 00 01122222333 55666777777777779999999999999999999999999999
Q ss_pred EeccCCCCCCCCCCCccccchhhhcHHHHHhcCccccc-----CCCCCCEEEEEeCCCCCCCC--------chHHHHHHH
Q 002194 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSA-----NKLKKPILLVHGEEDNNSGT--------LTMQSDRFF 855 (954)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-----~~~~~P~Lii~G~~D~~v~~--------~~~~~~~~~ 855 (954)
+++|.++.....|+. .. ...|...++...+ ..-..++++.+|+.|..... .....+++.
T Consensus 145 ~~S~~~~~~~~~w~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~ 216 (251)
T PF00756_consen 145 AFSGALDPSPSLWGP--SD------DEAWKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELA 216 (251)
T ss_dssp EESEESETTHCHHHH--ST------CGHHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHH
T ss_pred ccCccccccccccCc--CC------cHHhhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhH
Confidence 999976643111111 01 1112222222211 22346799999999984210 012334444
Q ss_pred HHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 856 NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 856 ~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
+.|+..|.+..+..++| +|.+.. ....+...+.||
T Consensus 217 ~~l~~~g~~~~~~~~~G-~H~~~~---W~~~l~~~L~~~ 251 (251)
T PF00756_consen 217 QLLKAKGIPHTYHVFPG-GHDWAY---WRRRLPDALPWM 251 (251)
T ss_dssp HHCCCEECTTESEEEHS-ESSHHH---HHHHHHHHHHHH
T ss_pred HHHHHcCCCceEEEecC-ccchhh---HHHHHHHHHhhC
Confidence 55556677888888885 786532 334444555553
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.3e-10 Score=126.25 Aligned_cols=275 Identities=18% Similarity=0.186 Sum_probs=182.4
Q ss_pred CCCCCceecCCCCEEEEEecCCCCC-----------ccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCC
Q 002194 109 PPLPALSFSPQRDKILFLKRRALPP-----------LEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG 177 (954)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~ 177 (954)
..+....|||||+.++....+.... +..+..+...+..+.+++++......+.+..|+||+++.++ .
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--~ 237 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--R 237 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC--e
Confidence 3455678999999999986663322 23334455556678888888777777777899999995433 2
Q ss_pred ceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeE
Q 002194 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (954)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~ 257 (954)
..+.+.+++ ..+....|+|+|+.|+..+ ....+.++|+.+++..+........ +..+.+++||..
T Consensus 238 ~~~~l~gH~--~~v~~~~f~p~g~~i~Sgs---------~D~tvriWd~~~~~~~~~l~~hs~~----is~~~f~~d~~~ 302 (456)
T KOG0266|consen 238 NLKTLKGHS--TYVTSVAFSPDGNLLVSGS---------DDGTVRIWDVRTGECVRKLKGHSDG----ISGLAFSPDGNL 302 (456)
T ss_pred EEEEecCCC--CceEEEEecCCCCEEEEec---------CCCcEEEEeccCCeEEEeeeccCCc----eEEEEECCCCCE
Confidence 344555443 4789999999997777644 3556777777777776665555433 778999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce---eEcCCC--
Q 002194 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV---KEIGPP-- 331 (954)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~---~~l~~~-- 331 (954)
|+... ....|.++|+ +|.. ..+...
T Consensus 303 l~s~s-------------------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~ 333 (456)
T KOG0266|consen 303 LVSAS-------------------------------------------------YDGTIRVWDLETGSKLCLKLLSGAEN 333 (456)
T ss_pred EEEcC-------------------------------------------------CCccEEEEECCCCceeeeecccCCCC
Confidence 98651 1234677788 7762 233333
Q ss_pred c-cccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccC
Q 002194 332 A-VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (954)
Q Consensus 332 ~-~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD 409 (954)
. .+....|||+|++|+....++ .+.+|++... ..+....+.... .....+..+++
T Consensus 334 ~~~~~~~~fsp~~~~ll~~~~d~-------------~~~~w~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 390 (456)
T KOG0266|consen 334 SAPVTSVQFSPNGKYLLSASLDR-------------TLKLWDLRSGKSVGTYTGHSNLV----------RCIFSPTLSTG 390 (456)
T ss_pred CCceeEEEECCCCcEEEEecCCC-------------eEEEEEccCCcceeeecccCCcc----------eeEecccccCC
Confidence 2 468899999999999988443 8889999844 344444333210 01123344677
Q ss_pred CCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-ccccCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
|+.++.. .....|++|+. .++.....+..+ ...+..+.|+|....++..+.......++|..+
T Consensus 391 ~~~i~sg-------------~~d~~v~~~~~--~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 391 GKLIYSG-------------SEDGSVYVWDS--SSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCeEEEE-------------eCCceEEEEeC--CccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 7765554 34567889986 334445555555 566778899999999998875444345666543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-09 Score=108.59 Aligned_cols=282 Identities=15% Similarity=0.158 Sum_probs=157.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeee-cCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQ-GFPDG 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt-~~~~~ 188 (954)
.++.+.||.||++||..+.+ ..|.||++.+ =+..+.+-+. +.+-+
T Consensus 88 ~vt~~~FsSdGK~lat~~~D---------------------------------r~Ir~w~~~D-F~~~eHr~~R~nve~d 133 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGD---------------------------------RSIRLWDVRD-FENKEHRCIRQNVEYD 133 (420)
T ss_pred ceeeeEEcCCCceeEEEeCC---------------------------------ceEEEEecch-hhhhhhhHhhccccCC
Confidence 68899999999999999886 5789999853 2112222221 12211
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECC----CCceeecccCCCcc----ccccccceeEecCCeEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD----TGKARPLFQSPDIY----LNAIFDNFVWVNNSTLLVC 260 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~----~g~~~~lt~~~~~~----~~~~~~~~~wspDG~~l~~ 260 (954)
....++|+||-+.+++...+ ...|+++-.. |+-.-..+....-. ....+.++.....+++|..
T Consensus 134 -hpT~V~FapDc~s~vv~~~~--------g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~ims 204 (420)
T KOG2096|consen 134 -HPTRVVFAPDCKSVVVSVKR--------GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMS 204 (420)
T ss_pred -CceEEEECCCcceEEEEEcc--------CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEE
Confidence 45667999999999987642 3455555432 22111111111000 0111223444455555554
Q ss_pred EecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCc-eeEcCCC-ccccccc
Q 002194 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEIGPP-AVYTSLD 338 (954)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~-~~~l~~~-~~~~~~~ 338 (954)
.+ ....|.++++.|+ +..+..+ ......+
T Consensus 205 as-------------------------------------------------~dt~i~lw~lkGq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 205 AS-------------------------------------------------LDTKICLWDLKGQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred ec-------------------------------------------------CCCcEEEEecCCceeeeecccccccccee
Confidence 31 1234677777553 3444433 4556788
Q ss_pred cCCCCcEEEEEeecCCcccccccCCCCcceEEEecc---CceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD---GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 339 ~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~---g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
.||||++|+... |+.++.+|.+- .+..+.+.. -+...++..++..++||+++++++-
T Consensus 236 vSP~GRFia~~g-------------FTpDVkVwE~~f~kdG~fqev~r-------vf~LkGH~saV~~~aFsn~S~r~vt 295 (420)
T KOG2096|consen 236 VSPDGRFIAVSG-------------FTPDVKVWEPIFTKDGTFQEVKR-------VFSLKGHQSAVLAAAFSNSSTRAVT 295 (420)
T ss_pred eCCCCcEEEEec-------------CCCCceEEEEEeccCcchhhhhh-------hheeccchhheeeeeeCCCcceeEE
Confidence 999999999887 44488888753 222222111 1122244566778999999998776
Q ss_pred EEEeccCCCccccccCCCeEEEEecCC--CCCCCceEE-------eecccccCceeeccCCceEEEEEeccccceEEEEE
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEP--VQGEGPEIL-------HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~g~~~~~l-------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (954)
. +..+.+.+||.+- ..+..++.| .......-.+..||.|+.|+.+.. +.|-++
T Consensus 296 v-------------SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-----s~l~~~ 357 (420)
T KOG2096|consen 296 V-------------SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-----SDLKVF 357 (420)
T ss_pred E-------------ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-----CceEEE
Confidence 5 3334444554310 012333333 112222335789999999988742 346666
Q ss_pred cCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 487 SPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 487 d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
....|... ..+.+...+.+.. ++|++||++++...
T Consensus 358 ~se~g~~~-~~~e~~h~~~Is~------is~~~~g~~~atcG 392 (420)
T KOG2096|consen 358 ASEDGKDY-PELEDIHSTTISS------ISYSSDGKYIATCG 392 (420)
T ss_pred EcccCccc-hhHHHhhcCceee------EEecCCCcEEeeec
Confidence 65554211 1222333333333 89999999998765
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9e-09 Score=101.80 Aligned_cols=255 Identities=12% Similarity=0.137 Sum_probs=160.5
Q ss_pred eeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEE
Q 002194 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (954)
Q Consensus 179 ~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l 258 (954)
.+.|.++ ...+....|++|+++|+-.+. ...|.++|.-+.......+.+..+ +-.++++|.|+.|
T Consensus 48 rr~LkGH--~~Ki~~~~ws~Dsr~ivSaSq---------DGklIvWDs~TtnK~haipl~s~W----VMtCA~sPSg~~V 112 (343)
T KOG0286|consen 48 RRTLKGH--LNKIYAMDWSTDSRRIVSASQ---------DGKLIVWDSFTTNKVHAIPLPSSW----VMTCAYSPSGNFV 112 (343)
T ss_pred EEEeccc--ccceeeeEecCCcCeEEeecc---------CCeEEEEEcccccceeEEecCcee----EEEEEECCCCCeE
Confidence 3455553 357999999999999998764 567888888776555555556654 6789999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe---CC---ceeEcCCC-
Q 002194 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DG---TVKEIGPP- 331 (954)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~---~G---~~~~l~~~- 331 (954)
++..-+ ..-.||.+.. +| ..+.+...
T Consensus 113 AcGGLd-----------------------------------------------N~Csiy~ls~~d~~g~~~v~r~l~gHt 145 (343)
T KOG0286|consen 113 ACGGLD-----------------------------------------------NKCSIYPLSTRDAEGNVRVSRELAGHT 145 (343)
T ss_pred EecCcC-----------------------------------------------ceeEEEecccccccccceeeeeecCcc
Confidence 976100 1122444432 22 12334444
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeecc-CC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS-DK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wsp-Dg 410 (954)
+......|-+|+. |+..+.+ .+.-+||+++++...... ++.+.+-+++++| |+
T Consensus 146 gylScC~f~dD~~-ilT~SGD-------------~TCalWDie~g~~~~~f~------------GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 146 GYLSCCRFLDDNH-ILTGSGD-------------MTCALWDIETGQQTQVFH------------GHTGDVMSLSLSPSDG 199 (343)
T ss_pred ceeEEEEEcCCCc-eEecCCC-------------ceEEEEEcccceEEEEec------------CCcccEEEEecCCCCC
Confidence 5666677777664 4554422 278899999765444332 2223456788999 77
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+..+-- +-....++||+ .++.-.+....++.+++.+.|-|+|..++..+++.. -+||.+..+.
T Consensus 200 ntFvSg-------------~cD~~aklWD~--R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t--cRlyDlRaD~ 262 (343)
T KOG0286|consen 200 NTFVSG-------------GCDKSAKLWDV--RSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT--CRLYDLRADQ 262 (343)
T ss_pred CeEEec-------------ccccceeeeec--cCcceeEeecccccccceEEEccCCCeeeecCCCce--eEEEeecCCc
Confidence 743322 12335567775 355455566788999999999999999888876655 6788776654
Q ss_pred CCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEE
Q 002194 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (954)
Q Consensus 491 ~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 567 (954)
. ..++.... ... +-..+.||..|+.|+.... .....+||.=.++..-+
T Consensus 263 ~----~a~ys~~~-~~~---gitSv~FS~SGRlLfagy~---------------------d~~c~vWDtlk~e~vg~ 310 (343)
T KOG0286|consen 263 E----LAVYSHDS-IIC---GITSVAFSKSGRLLFAGYD---------------------DFTCNVWDTLKGERVGV 310 (343)
T ss_pred E----EeeeccCc-ccC---CceeEEEcccccEEEeeec---------------------CCceeEeeccccceEEE
Confidence 2 33333221 111 1112789999988777652 22488999766654433
|
|
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.1e-10 Score=123.24 Aligned_cols=70 Identities=16% Similarity=0.025 Sum_probs=59.0
Q ss_pred ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC-CCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP-FESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
.+.+|++|+|+|+|+.|..+| ++.++++.+.+...+..+++++++ ++||... .+....+.+.+.+||.+.
T Consensus 304 ~l~~I~~PtLvI~G~~D~~~p--~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~-le~p~~~~~~L~~FL~~~ 374 (379)
T PRK00175 304 ALARIKARFLVVSFTSDWLFP--PARSREIVDALLAAGADVSYAEIDSPYGHDAF-LLDDPRYGRLVRAFLERA 374 (379)
T ss_pred HHhcCCCCEEEEEECCccccC--HHHHHHHHHHHHhcCCCeEEEEeCCCCCchhH-hcCHHHHHHHHHHHHHhh
Confidence 346789999999999999998 899999999998877777888775 8999874 566678888999998874
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-10 Score=126.50 Aligned_cols=207 Identities=13% Similarity=0.157 Sum_probs=141.2
Q ss_pred CceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCe
Q 002194 177 GQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST 256 (954)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~ 256 (954)
+..+.+.++ .+.+...+||||.+.|+-++ .+....||.++.. .......++. +.+..+.|+|-|-
T Consensus 442 ~~~~~L~GH--~GPVyg~sFsPd~rfLlScS-------ED~svRLWsl~t~--s~~V~y~GH~----~PVwdV~F~P~Gy 506 (707)
T KOG0263|consen 442 GTSRTLYGH--SGPVYGCSFSPDRRFLLSCS-------EDSSVRLWSLDTW--SCLVIYKGHL----APVWDVQFAPRGY 506 (707)
T ss_pred ceeEEeecC--CCceeeeeecccccceeecc-------CCcceeeeecccc--eeEEEecCCC----cceeeEEecCCce
Confidence 455567664 36799999999999998866 4456677766643 3332322222 2366888999997
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-cccc
Q 002194 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYT 335 (954)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-~~~~ 335 (954)
+++.+ +.+ .+.+||..|-....+-+..+ ..+.
T Consensus 507 YFata---------------------s~D--------------------------~tArLWs~d~~~PlRifaghlsDV~ 539 (707)
T KOG0263|consen 507 YFATA---------------------SHD--------------------------QTARLWSTDHNKPLRIFAGHLSDVD 539 (707)
T ss_pred EEEec---------------------CCC--------------------------ceeeeeecccCCchhhhcccccccc
Confidence 66654 111 34457777654444444444 6667
Q ss_pred ccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 336 ~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
-+.|.|+..+++..+.+ .++.+||+.++...++.. ++...+..++|||+|+.|+-
T Consensus 540 cv~FHPNs~Y~aTGSsD-------------~tVRlWDv~~G~~VRiF~------------GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSSD-------------RTVRLWDVSTGNSVRIFT------------GHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eEEECCcccccccCCCC-------------ceEEEEEcCCCcEEEEec------------CCCCceEEEEEcCCCceEee
Confidence 78999999999987644 389999998665544443 22244578999999997766
Q ss_pred EEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
. +..+.|.+||+ ..+....++..+...+.+++||.||..||..+.+.. .+||.+.
T Consensus 595 g-------------~ed~~I~iWDl--~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns--V~lWD~~ 649 (707)
T KOG0263|consen 595 G-------------DEDGLIKIWDL--ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS--VRLWDLT 649 (707)
T ss_pred c-------------ccCCcEEEEEc--CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCe--EEEEEch
Confidence 5 45668899997 344445666667788899999999999998866554 7788544
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-09 Score=122.85 Aligned_cols=243 Identities=16% Similarity=0.186 Sum_probs=150.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc---eeecccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK---ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~---~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
.+....+||||+.++.... ...+.++++.+++ .+.+ .. ....+..++|+|||+.|+...
T Consensus 161 sv~~~~fs~~g~~l~~~~~---------~~~i~~~~~~~~~~~~~~~l-~~----h~~~v~~~~fs~d~~~l~s~s---- 222 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASS---------DGLIRIWKLEGIKSNLLREL-SG----HTRGVSDVAFSPDGSYLLSGS---- 222 (456)
T ss_pred ceEEEEEcCCCCeEEEccC---------CCcEEEeecccccchhhccc-cc----cccceeeeEECCCCcEEEEec----
Confidence 5666899999999888652 3344444444544 2222 11 222378999999999887651
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--CCc-eeEcCCC-ccccccccCCC
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGT-VKEIGPP-AVYTSLDPSPD 342 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~--~G~-~~~l~~~-~~~~~~~~SpD 342 (954)
...+|.++++ ++. .+.+... ..+...+|+|+
T Consensus 223 ---------------------------------------------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~ 257 (456)
T KOG0266|consen 223 ---------------------------------------------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD 257 (456)
T ss_pred ---------------------------------------------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCC
Confidence 1234556666 333 4445444 77899999999
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
|+.|+..+.+ ..+.+||+.+++. +.+..+. .++..++|++||+.++..
T Consensus 258 g~~i~Sgs~D-------------~tvriWd~~~~~~~~~l~~hs-------------~~is~~~f~~d~~~l~s~----- 306 (456)
T KOG0266|consen 258 GNLLVSGSDD-------------GTVRIWDVRTGECVRKLKGHS-------------DGISGLAFSPDGNLLVSA----- 306 (456)
T ss_pred CCEEEEecCC-------------CcEEEEeccCCeEEEeeeccC-------------CceEEEEECCCCCEEEEc-----
Confidence 9777777643 3899999997554 4444432 456789999999976655
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCc---eEEeeccc--ccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcE
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDL--RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~---~~l~~~~~--~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (954)
+..+.|.+||+ .++.. +.+...+. .+..+.|+|+|++|+....+.. .++|.+.... . .
T Consensus 307 --------s~d~~i~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~--~~~w~l~~~~---~-~ 369 (456)
T KOG0266|consen 307 --------SYDGTIRVWDL---ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT--LKLWDLRSGK---S-V 369 (456)
T ss_pred --------CCCccEEEEEC---CCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe--EEEEEccCCc---c-e
Confidence 44668999996 55552 34433333 3678999999999998865543 5566554322 1 2
Q ss_pred EEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEE
Q 002194 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (954)
Q Consensus 497 ~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 567 (954)
..........+.. .. ...+++|++++.... ...++.||+.++.....
T Consensus 370 ~~~~~~~~~~~~~-~~--~~~~~~~~~i~sg~~---------------------d~~v~~~~~~s~~~~~~ 416 (456)
T KOG0266|consen 370 GTYTGHSNLVRCI-FS--PTLSTGGKLIYSGSE---------------------DGSVYVWDSSSGGILQR 416 (456)
T ss_pred eeecccCCcceeE-ec--ccccCCCCeEEEEeC---------------------CceEEEEeCCccchhhh
Confidence 2222222111100 01 334778888777662 22499999987655433
|
|
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.2e-10 Score=118.26 Aligned_cols=188 Identities=14% Similarity=0.107 Sum_probs=111.6
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh-hHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR-FVEQLVACAEAAVE 748 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~-~~~~~~~D~~~av~ 748 (954)
.|.||++||.+.... .| . .....| .+|.|++ .+.+|+|.+..... ......+|+.+.++
T Consensus 2 ~p~vvllHG~~~~~~-----------~w---~-~~~~~l--~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~l~~~l~ 61 (242)
T PRK11126 2 LPWLVFLHGLLGSGQ-----------DW---Q-PVGEAL--PDYPRLY---IDLPGHGGSAAISVDGFADVSRLLSQTLQ 61 (242)
T ss_pred CCEEEEECCCCCChH-----------HH---H-HHHHHc--CCCCEEE---ecCCCCCCCCCccccCHHHHHHHHHHHHH
Confidence 367999999642211 11 1 233334 4799999 66678887754321 23344455544444
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC-cccEEEEeccCCCCCCC-----------CCC--Ccccc-------
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLT-----------PFG--FQNED------- 807 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~~~~~~-----------~~~--~~~~~------- 807 (954)
.+ +.+++.++||||||.+++.++.++|+ +++++|+.++....... .+. +....
T Consensus 62 ~~------~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (242)
T PRK11126 62 SY------NILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLAD 135 (242)
T ss_pred Hc------CCCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHH
Confidence 32 34689999999999999999999865 49999887654321100 000 00000
Q ss_pred ---chh-----hhcHHHH----------------Hhc------CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHH
Q 002194 808 ---RTL-----WEATSTY----------------VEM------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (954)
Q Consensus 808 ---~~~-----~~~~~~~----------------~~~------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~ 857 (954)
... ......+ ... +....+.++++|+|+++|++|..+. . +.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~---~----~~~~ 208 (242)
T PRK11126 136 WYQQPVFASLNAEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ---A----LAQQ 208 (242)
T ss_pred HHhcchhhccCccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH---H----HHHH
Confidence 000 0000000 000 1112456789999999999997531 1 2221
Q ss_pred HHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 858 LKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 858 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
. +.++++++++||.+. .+..+.+.+.|.+||.+
T Consensus 209 ---~--~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 209 ---L--ALPLHVIPNAGHNAH-RENPAAFAASLAQILRL 241 (242)
T ss_pred ---h--cCeEEEeCCCCCchh-hhChHHHHHHHHHHHhh
Confidence 1 468899999999874 67778888889888864
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.7e-09 Score=102.12 Aligned_cols=271 Identities=8% Similarity=0.066 Sum_probs=159.8
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCC
Q 002194 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (954)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~ 188 (954)
..+.+++|.-||.+||..+.+ ..+.+|++..+ ...+.+....++
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~d---------------------------------ktv~v~n~e~~---r~~~~~~~~gh~ 64 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFD---------------------------------KTVSVWNLERD---RFRKELVYRGHT 64 (313)
T ss_pred hcceEEEEcccCceeeecccC---------------------------------CceEEEEecch---hhhhhhcccCCC
Confidence 357789999999999988775 45678887432 111222221223
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+-...|+|-..-++++.. +...|.++|...++....+....+. ....|+|||+.+++..
T Consensus 65 ~svdql~w~~~~~d~~atas--------~dk~ir~wd~r~~k~~~~i~~~~en-----i~i~wsp~g~~~~~~~------ 125 (313)
T KOG1407|consen 65 DSVDQLCWDPKHPDLFATAS--------GDKTIRIWDIRSGKCTARIETKGEN-----INITWSPDGEYIAVGN------ 125 (313)
T ss_pred cchhhheeCCCCCcceEEec--------CCceEEEEEeccCcEEEEeeccCcc-----eEEEEcCCCCEEEEec------
Confidence 36778899986655555432 4567778888888887666555442 2678999999999871
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l 346 (954)
....|-.+|. +-++..-.+. .......|+-++. +
T Consensus 126 -------------------------------------------kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd-~ 161 (313)
T KOG1407|consen 126 -------------------------------------------KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND-L 161 (313)
T ss_pred -------------------------------------------CcccEEEEEecccceeehhcccceeeeeeecCCCC-E
Confidence 1123445555 3332222222 4455677775554 4
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
.|..+.. +.+.|..-. ..+++.... .+..+.--+.|+|||++++.-
T Consensus 162 Fflt~Gl------------G~v~ILsyp--sLkpv~si~----------AH~snCicI~f~p~GryfA~G---------- 207 (313)
T KOG1407|consen 162 FFLTNGL------------GCVEILSYP--SLKPVQSIK----------AHPSNCICIEFDPDGRYFATG---------- 207 (313)
T ss_pred EEEecCC------------ceEEEEecc--ccccccccc----------cCCcceEEEEECCCCceEeec----------
Confidence 4444232 134333322 122222211 122333458999999976664
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE-ecCCCCC
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL-FDRSSED 505 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l-~~~~~~~ 505 (954)
+....+-+||++ +=--.|.++..++.++.++||-||+.|+.++++. -|=+.++.+|+ ..-.+ .+.+
T Consensus 208 ---sADAlvSLWD~~--ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh----~IDIA~vetGd-~~~eI~~~~~--- 274 (313)
T KOG1407|consen 208 ---SADALVSLWDVD--ELICERCISRLDWPVRTLSFSHDGRMLASASEDH----FIDIAEVETGD-RVWEIPCEGP--- 274 (313)
T ss_pred ---cccceeeccChh--HhhhheeeccccCceEEEEeccCcceeeccCccc----eEEeEecccCC-eEEEeeccCC---
Confidence 334466788851 1112367788899999999999999999887543 13344445542 11111 1111
Q ss_pred ccCCCCCCCeeeccCCcEEEEEEeec
Q 002194 506 VYSDPGSPMMRRTSTGTYVIAKIKKE 531 (954)
Q Consensus 506 ~~~~~~~~~~~~spdG~~l~~~~~~~ 531 (954)
.+. ++|.|.-..|+|...+.
T Consensus 275 t~t------VAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 275 TFT------VAWHPKRPLLAYACDDK 294 (313)
T ss_pred cee------EEecCCCceeeEEecCC
Confidence 222 89999999999998543
|
|
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=109.48 Aligned_cols=210 Identities=18% Similarity=0.198 Sum_probs=136.9
Q ss_pred CeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCC----CCC
Q 002194 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT----PII 724 (954)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~----~~~ 724 (954)
+-.+.--+|+|+.+..+| +.|++.|+-|-. ..+..|..- ..+-+....+|++|+.++.- ...
T Consensus 25 ~c~Mtf~vylPp~a~~~k--~~P~lf~LSGLT-----------CT~~Nfi~K-sg~qq~As~hgl~vV~PDTSPRG~~v~ 90 (283)
T KOG3101|consen 25 KCSMTFGVYLPPDAPRGK--RCPVLFYLSGLT-----------CTHENFIEK-SGFQQQASKHGLAVVAPDTSPRGVEVA 90 (283)
T ss_pred ccceEEEEecCCCcccCC--cCceEEEecCCc-----------ccchhhHhh-hhHHHhHhhcCeEEECCCCCCCccccC
Confidence 345667789998876555 499999998842 111112110 01222334589999985541 111
Q ss_pred CCCCc--------cc----chhh------HHHHHHHHHHHHHHHH-HcCCCCCCcEEEEeeChHHHHHHHHHHhCCCccc
Q 002194 725 GEGDE--------EA----NDRF------VEQLVACAEAAVEEVV-RRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC 785 (954)
Q Consensus 725 G~G~~--------~~----~~~~------~~~~~~D~~~av~~l~-~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~ 785 (954)
|..++ +. .+.| ....+.++.. .|. ..-.+|+.+++|.||||||.-|+....++|.+++
T Consensus 91 g~~eswDFG~GAGFYvnAt~epw~~~yrMYdYv~kELp~---~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kyk 167 (283)
T KOG3101|consen 91 GDDESWDFGQGAGFYVNATQEPWAKHYRMYDYVVKELPQ---LLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYK 167 (283)
T ss_pred CCcccccccCCceeEEecccchHhhhhhHHHHHHHHHHH---HhccccccccchhcceeccccCCCceEEEEEcCccccc
Confidence 21111 10 0111 1122222222 222 1234899999999999999999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCC---CCCEEEEEeCCCCCCCCchHH--HHHHHHHHHh
Q 002194 786 CGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL---KKPILLVHGEEDNNSGTLTMQ--SDRFFNALKG 860 (954)
Q Consensus 786 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~---~~P~Lii~G~~D~~v~~~~~~--~~~~~~~l~~ 860 (954)
.+-+.+|+.|....+|+-....+..-++...|..+++...++++ ..-+||-+|..|...+ ++ ...+.++.+.
T Consensus 168 SvSAFAPI~NP~~cpWGqKAf~gYLG~~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~---~qLlPe~l~~a~~~ 244 (283)
T KOG3101|consen 168 SVSAFAPICNPINCPWGQKAFTGYLGDNKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA---EQLLPENLLEACKA 244 (283)
T ss_pred ceeccccccCcccCcchHHHhhcccCCChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh---hhcChHHHHHHhhc
Confidence 99999999999888888665556666677777777776655554 4458999999998753 33 3456666664
Q ss_pred CC-CcEEEEEeCCCCCcCC
Q 002194 861 HG-ALCRLVILPFESHGYA 878 (954)
Q Consensus 861 ~g-~~~~~~~~~~~~H~~~ 878 (954)
.. .++.+...+|-+|.+.
T Consensus 245 ~~~~~v~~r~~~gyDHSYy 263 (283)
T KOG3101|consen 245 TWQAPVVFRLQEGYDHSYY 263 (283)
T ss_pred cccccEEEEeecCCCccee
Confidence 43 6788888999999874
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-09 Score=111.39 Aligned_cols=194 Identities=16% Similarity=0.198 Sum_probs=128.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc--eeecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
.+-+..||++|++||..+ .+...-+|.+..++.- ...+..+.. .+..+.||||.+.|+...
T Consensus 226 EVWfl~FS~nGkyLAsaS-------kD~Taiiw~v~~d~~~kl~~tlvgh~~-----~V~yi~wSPDdryLlaCg----- 288 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASAS-------KDSTAIIWIVVYDVHFKLKKTLVGHSQ-----PVSYIMWSPDDRYLLACG----- 288 (519)
T ss_pred cEEEEEEcCCCeeEeecc-------CCceEEEEEEecCcceeeeeeeecccC-----ceEEEEECCCCCeEEecC-----
Confidence 588899999999999866 3446778888776641 112222222 267889999999888651
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC---ccccccccCCCC
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP---AVYTSLDPSPDE 343 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~---~~~~~~~~SpDG 343 (954)
....++++|+ +|+.+..... ....+.+|-|||
T Consensus 289 --------------------------------------------~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg 324 (519)
T KOG0293|consen 289 --------------------------------------------FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG 324 (519)
T ss_pred --------------------------------------------chHheeeccCCcchhhhhcccCcCCCcceeEEccCC
Confidence 1122777888 8877666554 456789999999
Q ss_pred cEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 344 k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
.+++..+.+ ..+..||++|.......... . ..+..++.++||+.++..
T Consensus 325 ~~~V~Gs~d-------------r~i~~wdlDgn~~~~W~gvr----~--------~~v~dlait~Dgk~vl~v------- 372 (519)
T KOG0293|consen 325 FRFVTGSPD-------------RTIIMWDLDGNILGNWEGVR----D--------PKVHDLAITYDGKYVLLV------- 372 (519)
T ss_pred ceeEecCCC-------------CcEEEecCCcchhhcccccc----c--------ceeEEEEEcCCCcEEEEE-------
Confidence 998887744 37889999987532221110 0 124568899999987776
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
....++.+++. ....-+.+...+..+.++..|.||+.++..-...+ .+||.+.
T Consensus 373 ------~~d~~i~l~~~---e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe--i~LWDl~ 425 (519)
T KOG0293|consen 373 ------TVDKKIRLYNR---EARVDRGLISEEQPITSFSISKDGKLALVNLQDQE--IHLWDLE 425 (519)
T ss_pred ------ecccceeeech---hhhhhhccccccCceeEEEEcCCCcEEEEEcccCe--eEEeecc
Confidence 22446777764 33333335555667888999999998776544432 5666554
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-09 Score=108.59 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=116.0
Q ss_pred EEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc
Q 002194 653 SATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN 732 (954)
Q Consensus 653 ~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~ 732 (954)
+..++.|.. .+.+|+||+.||.. +. ..++....+.+|++||+|+.++.....+.+
T Consensus 5 ~l~v~~P~~-----~g~yPVv~f~~G~~---------~~------~s~Ys~ll~hvAShGyIVV~~d~~~~~~~~----- 59 (259)
T PF12740_consen 5 PLLVYYPSS-----AGTYPVVLFLHGFL---------LI------NSWYSQLLEHVASHGYIVVAPDLYSIGGPD----- 59 (259)
T ss_pred CeEEEecCC-----CCCcCEEEEeCCcC---------CC------HHHHHHHHHHHHhCceEEEEecccccCCCC-----
Confidence 456778865 45699999999951 11 122345677889999999997754433321
Q ss_pred hhhHHHHHHHHHHHHHHHHHc--C------CCCCCcEEEEeeChHHHHHHHHHHhC-----CCcccEEEEeccCCCCCCC
Q 002194 733 DRFVEQLVACAEAAVEEVVRR--G------VAHPSKIAVGGHSYGAFMTANLLAHA-----PHLFCCGIARSGAYNRTLT 799 (954)
Q Consensus 733 ~~~~~~~~~D~~~av~~l~~~--~------~~d~~ri~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~~~~~~~~~ 799 (954)
....++++.+.++|+.+. . .+|-++++|+|||-||-+|..++..+ +.+|+++|.+.|+-.....
T Consensus 60 ---~~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~ 136 (259)
T PF12740_consen 60 ---DTDEVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKG 136 (259)
T ss_pred ---cchhHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccc
Confidence 145667778888888763 1 25888999999999999999998876 4589999999987422111
Q ss_pred CCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCC---------CCCCchHHHHHHHHHHHhCCCcEEEEEe
Q 002194 800 PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDN---------NSGTLTMQSDRFFNALKGHGALCRLVIL 870 (954)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~---------~v~~~~~~~~~~~~~l~~~g~~~~~~~~ 870 (954)
. ... +..+ .+.| ..-+...|+||+-..... ..| .-.+-.+||++++. +....+.
T Consensus 137 ~--~~~--------P~v~-~~~p--~s~~~~~P~lviGtGLg~~~~~~~~~~CaP-~g~n~~~Ff~~~~~---p~~~~v~ 199 (259)
T PF12740_consen 137 S--QTE--------PPVL-TYTP--QSFDFSMPALVIGTGLGGEPRNPLFPPCAP-AGVNYREFFDECKP---PSWHFVA 199 (259)
T ss_pred c--CCC--------Cccc-cCcc--cccCCCCCeEEEecccCcccccccCCCCCC-CCCCHHHHHHhcCC---CEEEEEe
Confidence 0 000 0000 0111 111245899999766663 223 01235788888754 3677778
Q ss_pred CCCCCc
Q 002194 871 PFESHG 876 (954)
Q Consensus 871 ~~~~H~ 876 (954)
.+.||.
T Consensus 200 ~~~GH~ 205 (259)
T PF12740_consen 200 KDYGHM 205 (259)
T ss_pred CCCCch
Confidence 899996
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-09 Score=114.94 Aligned_cols=237 Identities=15% Similarity=0.100 Sum_probs=146.3
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCC-CCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDP-SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~-~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
-++.-++..||..+..-++.+..-.. .+.+..|+||++||-...+ ...+-...+.....+||.|+.
T Consensus 93 y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S-------------~~~YVr~lv~~a~~~G~r~VV 159 (409)
T KOG1838|consen 93 YTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGS-------------HESYVRHLVHEAQRKGYRVVV 159 (409)
T ss_pred ceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCC-------------hhHHHHHHHHHHHhCCcEEEE
Confidence 34455666799988888886654321 1223479999999943211 111222344455679999999
Q ss_pred cCCCCCCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC--cccEEEEeccC
Q 002194 718 GPTTPIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSGA 793 (954)
Q Consensus 718 ~~~~~~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~~ 793 (954)
.+.+ |.|.+.. +.-+-....+|+.++++++.++.- ..++.++|.||||.|...++++..+ .+.|+++++-.
T Consensus 160 fN~R---G~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P--~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~P 234 (409)
T KOG1838|consen 160 FNHR---GLGGSKLTTPRLFTAGWTEDLREVVNHIKKRYP--QAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNP 234 (409)
T ss_pred ECCC---CCCCCccCCCceeecCCHHHHHHHHHHHHHhCC--CCceEEEEecchHHHHHHHhhhccCCCCceeEEEEecc
Confidence 5554 4444432 233334568999999999998842 2489999999999999999987543 24555555544
Q ss_pred CCCCCC-------------------------------------CCCCccccchh-------------h-hcHHHHHhcCc
Q 002194 794 YNRTLT-------------------------------------PFGFQNEDRTL-------------W-EATSTYVEMSP 822 (954)
Q Consensus 794 ~~~~~~-------------------------------------~~~~~~~~~~~-------------~-~~~~~~~~~sp 822 (954)
+|.... .+....+.++. + ...+.|.+.|+
T Consensus 235 wd~~~~~~~~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~~deYY~~aSs 314 (409)
T KOG1838|consen 235 WDLLAASRSIETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKSVDEYYKKASS 314 (409)
T ss_pred chhhhhhhHHhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCcHHHHHhhcch
Confidence 442100 00000000000 0 12366778899
Q ss_pred ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCc---ccHHHHHHH-HHHHHHHhc
Q 002194 823 FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR---ESIMHVLWE-TDRWLQKYC 898 (954)
Q Consensus 823 ~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~---~~~~~~~~~-i~~fl~~~l 898 (954)
..++++|++|+|+|++.+|+++| . ++.-.-... .+..+-+++-.-.||.-.-. .+..-++++ +.+|+....
T Consensus 315 ~~~v~~I~VP~L~ina~DDPv~p--~-~~ip~~~~~--~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~~ 389 (409)
T KOG1838|consen 315 SNYVDKIKVPLLCINAADDPVVP--E-EAIPIDDIK--SNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNAI 389 (409)
T ss_pred hhhcccccccEEEEecCCCCCCC--c-ccCCHHHHh--cCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHHH
Confidence 99999999999999999999997 3 333222222 23467777777778953211 134455555 778876654
|
|
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-09 Score=115.05 Aligned_cols=195 Identities=10% Similarity=0.104 Sum_probs=113.9
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~a 746 (954)
.|.||++||..... ..| ......|.++||.|++ .+..|+|.+.... .......+++.+.
T Consensus 18 ~p~vvliHG~~~~~-----------~~w----~~~~~~L~~~g~~vi~---~dl~g~G~s~~~~~~~~~~~~~~~~l~~~ 79 (273)
T PLN02211 18 PPHFVLIHGISGGS-----------WCW----YKIRCLMENSGYKVTC---IDLKSAGIDQSDADSVTTFDEYNKPLIDF 79 (273)
T ss_pred CCeEEEECCCCCCc-----------CcH----HHHHHHHHhCCCEEEE---ecccCCCCCCCCcccCCCHHHHHHHHHHH
Confidence 58899999953211 111 1345567778999999 6667887653221 2233334444444
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC-CCC-------C--------------CCCc
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR-TLT-------P--------------FGFQ 804 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~-~~~-------~--------------~~~~ 804 (954)
++ +.. ..+++.++||||||.++..++.++|++++++|.+++.... ... . +...
T Consensus 80 i~---~l~--~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (273)
T PLN02211 80 LS---SLP--ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLG 154 (273)
T ss_pred HH---hcC--CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccC
Confidence 33 322 1368999999999999999999999999999998653210 000 0 0000
Q ss_pred c----ccchh---------hh-cH----HHHHh------cCccc------ccCCC-CCCEEEEEeCCCCCCCCchHHHHH
Q 002194 805 N----EDRTL---------WE-AT----STYVE------MSPFM------SANKL-KKPILLVHGEEDNNSGTLTMQSDR 853 (954)
Q Consensus 805 ~----~~~~~---------~~-~~----~~~~~------~sp~~------~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~ 853 (954)
. ..... +. .+ ..+.. ...+. ...++ ++|+|+|.|++|..+| ++..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip--~~~~~~ 232 (273)
T PLN02211 155 PDQPPTSAIIKKEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVK--PEQQEA 232 (273)
T ss_pred CCCCCceeeeCHHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCC--HHHHHH
Confidence 0 00000 00 00 00000 01111 12244 6799999999999998 888888
Q ss_pred HHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+.+.+.. .+++.++ +||... .+....+.+.|.+...
T Consensus 233 m~~~~~~----~~~~~l~-~gH~p~-ls~P~~~~~~i~~~a~ 268 (273)
T PLN02211 233 MIKRWPP----SQVYELE-SDHSPF-FSTPFLLFGLLIKAAA 268 (273)
T ss_pred HHHhCCc----cEEEEEC-CCCCcc-ccCHHHHHHHHHHHHH
Confidence 7776542 2677776 799863 4556666555555443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-08 Score=108.88 Aligned_cols=258 Identities=14% Similarity=0.118 Sum_probs=141.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
....+++||||++|+..... . ..|.+|++..+|.. ..+...+.+.
T Consensus 36 ~~~~l~~spd~~~lyv~~~~----------------------~----------~~i~~~~~~~~g~l---~~~~~~~~~~ 80 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRP----------------------E----------FRVLSYRIADDGAL---TFAAESPLPG 80 (330)
T ss_pred CCccEEECCCCCEEEEEECC----------------------C----------CcEEEEEECCCCce---EEeeeecCCC
Confidence 45578999999988665431 1 25677777533322 2222122223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC-Cce-eecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKA-RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~-g~~-~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
...+..++|||++|+.+.. . ...|.+++++. |.. ..+...... .....++++|||+.++++..
T Consensus 81 ~p~~i~~~~~g~~l~v~~~------~--~~~v~v~~~~~~g~~~~~~~~~~~~---~~~~~~~~~p~g~~l~v~~~---- 145 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASY------N--ANCVSVSPLDKDGIPVAPIQIIEGL---EGCHSANIDPDNRTLWVPCL---- 145 (330)
T ss_pred CceEEEECCCCCEEEEEEc------C--CCeEEEEEECCCCCCCCceeeccCC---CcccEeEeCCCCCEEEEeeC----
Confidence 4567899999998876542 1 34555665542 221 111111110 01346779999999987610
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C-Ccee-------EcCCCccccccc
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D-GTVK-------EIGPPAVYTSLD 338 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~-G~~~-------~l~~~~~~~~~~ 338 (954)
+...|+++++ + |... .+..+.....+.
T Consensus 146 --------------------------------------------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~ 181 (330)
T PRK11028 146 --------------------------------------------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV 181 (330)
T ss_pred --------------------------------------------CCCEEEEEEECCCCcccccCCCceecCCCCCCceEE
Confidence 2345777777 3 4332 111224456789
Q ss_pred cCCCCcEEEEEeecCCcccccccCCCCcceEEEecc--CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002194 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 339 ~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~ 416 (954)
|+|||++++..... .+.+.+|+++ ++..+.+..... .|....+. .....+.++|||+.++..
T Consensus 182 ~~pdg~~lyv~~~~------------~~~v~v~~~~~~~~~~~~~~~~~~---~p~~~~~~-~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 182 FHPNQQYAYCVNEL------------NSSVDVWQLKDPHGEIECVQTLDM---MPADFSDT-RWAADIHITPDGRHLYAC 245 (330)
T ss_pred ECCCCCEEEEEecC------------CCEEEEEEEeCCCCCEEEEEEEec---CCCcCCCC-ccceeEEECCCCCEEEEe
Confidence 99999998887632 2388899987 333332222110 01100000 112357899999865554
Q ss_pred EEeccCCCccccccCCCeEEEEecCCCCCCCceEEe--ecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+. ..+.|.+++++ .+++..+.+. ........+.++|||++|+.+...++ ...+|.++.+++
T Consensus 246 -~~-----------~~~~I~v~~i~-~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~-~v~v~~~~~~~g 308 (330)
T PRK11028 246 -DR-----------TASLISVFSVS-EDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSH-HISVYEIDGETG 308 (330)
T ss_pred -cC-----------CCCeEEEEEEe-CCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCC-cEEEEEEcCCCC
Confidence 11 13466666651 1222222221 12234567899999999988754333 367777776654
|
|
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-09 Score=110.07 Aligned_cols=178 Identities=14% Similarity=0.069 Sum_probs=109.7
Q ss_pred HHHHCCcEEEEcCCCCCCCCCCcccchhh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcc
Q 002194 707 LWLARGFAILGGPTTPIIGEGDEEANDRF--VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (954)
Q Consensus 707 ~la~~G~~V~~~~~~~~~G~G~~~~~~~~--~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~ 784 (954)
.|+. ...|.+ +|..|+|++..+.-. .......+.+.++..+..-.+ +++.|+|||+|||+|..+|.++|+++
T Consensus 112 ~La~-~~~vya---iDllG~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~~L--~KmilvGHSfGGYLaa~YAlKyPerV 185 (365)
T KOG4409|consen 112 DLAK-IRNVYA---IDLLGFGRSSRPKFSIDPTTAEKEFVESIEQWRKKMGL--EKMILVGHSFGGYLAAKYALKYPERV 185 (365)
T ss_pred hhhh-cCceEE---ecccCCCCCCCCCCCCCcccchHHHHHHHHHHHHHcCC--cceeEeeccchHHHHHHHHHhChHhh
Confidence 3444 788888 888899998664211 112222444555544444333 48999999999999999999999999
Q ss_pred cEEEEeccCCCCC---CCC-------CCC-------cccc-----c--hhhh-------cHHHHH---------------
Q 002194 785 CCGIARSGAYNRT---LTP-------FGF-------QNED-----R--TLWE-------ATSTYV--------------- 818 (954)
Q Consensus 785 ~a~v~~~~~~~~~---~~~-------~~~-------~~~~-----~--~~~~-------~~~~~~--------------- 818 (954)
+-+|+++|.--.. ..+ ..+ .... + .+|. .++.+.
T Consensus 186 ~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp~Lv~~~~~d~~~k~~~~~~ed~l~~Yi 265 (365)
T KOG4409|consen 186 EKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGPKLVSRLRPDRFRKFPSLIEEDFLHEYI 265 (365)
T ss_pred ceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccchHHHhhhhHHHHHhccccchhHHHHHHH
Confidence 9999999742110 000 000 0000 0 0000 000000
Q ss_pred ------------------------hcCcccccCCCC--CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC
Q 002194 819 ------------------------EMSPFMSANKLK--KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (954)
Q Consensus 819 ------------------------~~sp~~~~~~~~--~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 872 (954)
+..-++.+..++ +|+++|+|+.|..- ...+.++...+ ....++.+++|+
T Consensus 266 Y~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dWmD---~~~g~~~~~~~--~~~~~~~~~v~~ 340 (365)
T KOG4409|consen 266 YHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDWMD---KNAGLEVTKSL--MKEYVEIIIVPG 340 (365)
T ss_pred HHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCccccc---chhHHHHHHHh--hcccceEEEecC
Confidence 001122333444 89999999999863 45667777766 234589999999
Q ss_pred CCCcCCCcccHHHHHHHHHHHHHH
Q 002194 873 ESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 873 ~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
+||... ..+.+.+.+.++.++++
T Consensus 341 aGHhvy-lDnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 341 AGHHVY-LDNPEFFNQIVLEECDK 363 (365)
T ss_pred CCceee-cCCHHHHHHHHHHHHhc
Confidence 999874 56677777777777764
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-08 Score=112.58 Aligned_cols=248 Identities=15% Similarity=0.174 Sum_probs=155.5
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccC-CCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQS-PDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~-~~~~ 241 (954)
..+|+|+-.. ++..+|..+. ...+..+.|+++|++|+... ....|.++|....+..+-... ....
T Consensus 197 ~~vylW~~~s----~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~---------~~g~v~iwD~~~~k~~~~~~~~h~~r 262 (484)
T KOG0305|consen 197 QSVYLWSASS----GSVTELCSFG-EELVTSVKWSPDGSHLAVGT---------SDGTVQIWDVKEQKKTRTLRGSHASR 262 (484)
T ss_pred ceEEEEecCC----CceEEeEecC-CCceEEEEECCCCCEEEEee---------cCCeEEEEehhhccccccccCCcCce
Confidence 4799999754 5666776543 34789999999999999954 356777777655333222222 2222
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
+..++|. +..+.... ....|...|+
T Consensus 263 ----vg~laW~--~~~lssGs-------------------------------------------------r~~~I~~~dv 287 (484)
T KOG0305|consen 263 ----VGSLAWN--SSVLSSGS-------------------------------------------------RDGKILNHDV 287 (484)
T ss_pred ----eEEEecc--CceEEEec-------------------------------------------------CCCcEEEEEE
Confidence 7788997 33333220 1122444444
Q ss_pred -CC-c-eeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccc
Q 002194 322 -DG-T-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNS 396 (954)
Q Consensus 322 -~G-~-~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~ 396 (954)
.. . ...+... ..+-...|++||+++|-..+++ .+.|||....+. ..+..
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN-------------~~~Iwd~~~~~p~~~~~~------------- 341 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDN-------------VVFIWDGLSPEPKFTFTE------------- 341 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCCcc-------------ceEeccCCCccccEEEec-------------
Confidence 22 1 1112223 5667899999999999877554 789999854332 23333
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEec
Q 002194 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (954)
Q Consensus 397 ~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 476 (954)
+...+..++|+|=.+.|+.. |++ .....|..|+. .++...........+.++.||+..+.|+.+...
T Consensus 342 H~aAVKA~awcP~q~~lLAs-----GGG-----s~D~~i~fwn~---~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 342 HTAAVKALAWCPWQSGLLAT-----GGG-----SADRCIKFWNT---NTGARIDSVDTGSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred cceeeeEeeeCCCccCceEE-----cCC-----CcccEEEEEEc---CCCcEecccccCCceeeEEEcCCCCEEEEecCC
Confidence 33556789999988877765 222 33567888885 444443434455668899999999999988765
Q ss_pred cccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 477 KTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 477 ~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
...+..||.+..-. +......+...+.. +++||||..|+...
T Consensus 409 s~n~i~lw~~ps~~----~~~~l~gH~~RVl~------la~SPdg~~i~t~a 450 (484)
T KOG0305|consen 409 SENQITLWKYPSMK----LVAELLGHTSRVLY------LALSPDGETIVTGA 450 (484)
T ss_pred CCCcEEEEeccccc----eeeeecCCcceeEE------EEECCCCCEEEEec
Confidence 55457888886532 12222222222222 78999999998876
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.3e-08 Score=104.59 Aligned_cols=135 Identities=9% Similarity=0.030 Sum_probs=76.5
Q ss_pred cccccCC-CCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002194 335 TSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (954)
Q Consensus 335 ~~~~~Sp-DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i 413 (954)
..+.+++ ||+++..+. . +++++.|+.+.+................-.....|...++++|||+++
T Consensus 197 ~rP~~~~~dg~~~~vs~-e-------------G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 197 NHPAYSNKSGRLVWPTY-T-------------GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred cCCceEcCCCcEEEEec-C-------------CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 3446677 886665554 2 389999977654333222111000000000112344459999999988
Q ss_pred eEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
++....... ..-....+.|+++|. .+.+............++++||||+.++|..+... ..|.++|+.++
T Consensus 263 yV~~~~~~~---~thk~~~~~V~ViD~---~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s--~~VsViD~~t~ 332 (352)
T TIGR02658 263 YLLADQRAK---WTHKTASRFLFVVDA---KTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGD--KTLYIFDAETG 332 (352)
T ss_pred EEEecCCcc---ccccCCCCEEEEEEC---CCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC--CcEEEEECcCC
Confidence 775332110 011134568999996 44444332233456788999999996667666443 45889998875
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-09 Score=106.32 Aligned_cols=175 Identities=17% Similarity=0.182 Sum_probs=105.7
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002194 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (954)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~ 192 (954)
.+.|+|+|+.|++.... +.+..+ ........|+.++... .+...+. +.....+.
T Consensus 10 ~~~W~~~G~~l~~~~~~------------------~~~~~~---ks~~~~~~l~~~~~~~----~~~~~i~-l~~~~~I~ 63 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQT------------------RVDKSG---KSYYGEFELFYLNEKN----IPVESIE-LKKEGPIH 63 (194)
T ss_pred EEEecccCCEEEEEEEE------------------eeccCc---ceEEeeEEEEEEecCC----Cccceee-ccCCCceE
Confidence 57899999999997762 011111 1111224566655432 3333333 22223589
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCC
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (954)
.++|||+|+++|.+.. .....+.++|+++.....+ +... ...+.|||+|+.|+++.-.
T Consensus 64 ~~~WsP~g~~favi~g-------~~~~~v~lyd~~~~~i~~~---~~~~----~n~i~wsP~G~~l~~~g~~-------- 121 (194)
T PF08662_consen 64 DVAWSPNGNEFAVIYG-------SMPAKVTLYDVKGKKIFSF---GTQP----RNTISWSPDGRFLVLAGFG-------- 121 (194)
T ss_pred EEEECcCCCEEEEEEc-------cCCcccEEEcCcccEeEee---cCCC----ceEEEECCCCCEEEEEEcc--------
Confidence 9999999999988752 2233677777764333333 2222 4578999999999987110
Q ss_pred CCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCccccccccCCCCcEEEEEee
Q 002194 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSI 351 (954)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~~s~ 351 (954)
+ ..+.|..+|. +.+............+.|||||++++....
T Consensus 122 ----------------------------n----------~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 122 ----------------------------N----------LNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred ----------------------------C----------CCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 0 1234667777 443332223355678999999999998763
Q ss_pred cCCcccccccCCCCcceEEEeccCceEEE
Q 002194 352 HRPYSFIVPCGRFPRQVGVWTTDGIFVRE 380 (954)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~l~d~~g~~~~~ 380 (954)
. |..+.++.+.||+..|+...+
T Consensus 164 ~-------~r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 164 S-------PRLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred c-------cceeccccEEEEEecCeEeEe
Confidence 2 233345678899998876544
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-08 Score=123.65 Aligned_cols=237 Identities=12% Similarity=0.052 Sum_probs=138.7
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccC---CCCCCceeeeecCCC
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP---DGKLGQEIEIQGFPD 187 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~---~g~~~~~~~lt~~~~ 187 (954)
+..++|||||++||....+ ..|.||++.. ++. .....+..+..
T Consensus 486 V~~i~fs~dg~~latgg~D---------------------------------~~I~iwd~~~~~~~~~-~~~~~~~~~~~ 531 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVN---------------------------------KKIKIFECESIIKDGR-DIHYPVVELAS 531 (793)
T ss_pred EEEEEECCCCCEEEEEeCC---------------------------------CEEEEEECCccccccc-ccccceEEecc
Confidence 5568899999999888765 5788998742 110 00001111112
Q ss_pred CCcccceeecCC-CCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEec-CCeEEEEEecCC
Q 002194 188 GAKLNFVTWSQD-GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN-NSTLLVCTIPLL 265 (954)
Q Consensus 188 ~~~~~~~~wSPD-G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp-DG~~l~~~~~~~ 265 (954)
...+....|+|. ++.|+... ....|.++|+.+++........... +..++|+| ||..|+...
T Consensus 532 ~~~v~~l~~~~~~~~~las~~---------~Dg~v~lWd~~~~~~~~~~~~H~~~----V~~l~~~p~~~~~L~Sgs--- 595 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSN---------FEGVVQVWDVARSQLVTEMKEHEKR----VWSIDYSSADPTLLASGS--- 595 (793)
T ss_pred cCceeeEEeccCCCCEEEEEe---------CCCeEEEEECCCCeEEEEecCCCCC----EEEEEEcCCCCCEEEEEc---
Confidence 235677899875 56666543 2457777788776654333222222 67899996 788777651
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCCcccccccc-CCC
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPPAVYTSLDP-SPD 342 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~~~~~~~~~-SpD 342 (954)
....|.++|+ ++.. ..+.....+..+.| +++
T Consensus 596 ----------------------------------------------~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~ 629 (793)
T PLN00181 596 ----------------------------------------------DDGSVKLWSINQGVSIGTIKTKANICCVQFPSES 629 (793)
T ss_pred ----------------------------------------------CCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCC
Confidence 1234566676 5532 23322245566777 567
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCce--EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~ 420 (954)
|+.|++.+.+ +.|.+||+.... ...+.. ....+..+.|+ |+..++..
T Consensus 630 g~~latgs~d-------------g~I~iwD~~~~~~~~~~~~~-------------h~~~V~~v~f~-~~~~lvs~---- 678 (793)
T PLN00181 630 GRSLAFGSAD-------------HKVYYYDLRNPKLPLCTMIG-------------HSKTVSYVRFV-DSSTLVSS---- 678 (793)
T ss_pred CCEEEEEeCC-------------CeEEEEECCCCCccceEecC-------------CCCCEEEEEEe-CCCEEEEE----
Confidence 9999887743 389999987532 122222 11344567886 56644333
Q ss_pred cCCCccccccCCCeEEEEecCCC----CCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEE
Q 002194 421 DGGDAKVEVTPRDIIYTQQAEPV----QGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (954)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~----~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (954)
+..+.|.+|++... .......+..+...+..++|+|+|++|+..+.++. ..||.
T Consensus 679 ---------s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~--v~iw~ 736 (793)
T PLN00181 679 ---------STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE--VFVYH 736 (793)
T ss_pred ---------ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE--EEEEE
Confidence 33557888886111 11223445555556677899999998888765442 44554
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-08 Score=105.57 Aligned_cols=265 Identities=15% Similarity=0.168 Sum_probs=166.9
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+....|+-||..||+.. ....+.+++.+|+...-+-.+.+. +-++.|..+|.+|+...
T Consensus 236 kdVT~L~Wn~~G~~LatG~---------~~G~~riw~~~G~l~~tl~~HkgP-----I~slKWnk~G~yilS~~------ 295 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGS---------EDGEARIWNKDGNLISTLGQHKGP-----IFSLKWNKKGTYILSGG------ 295 (524)
T ss_pred CCcceEEecCCCCeEEEee---------cCcEEEEEecCchhhhhhhccCCc-----eEEEEEcCCCCEEEecc------
Confidence 4788999999999999954 456667777777766655444443 77999999999999661
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC--ccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~--~~~~~~~~SpDGk~ 345 (954)
....+.++|. +|+..+.... ...-++.|--+.+.
T Consensus 296 -------------------------------------------vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F 332 (524)
T KOG0273|consen 296 -------------------------------------------VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEF 332 (524)
T ss_pred -------------------------------------------CCccEEEEeccCceEEEeeeeccCCccceEEecCceE
Confidence 1123566787 8876665544 22245666544433
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
. ..+. ++.|+++.++.+.+ +.+. ++...+..+.|.|.|+.|+-.
T Consensus 333 ~-ts~t-------------d~~i~V~kv~~~~P~~t~~-------------GH~g~V~alk~n~tg~LLaS~-------- 377 (524)
T KOG0273|consen 333 A-TSST-------------DGCIHVCKVGEDRPVKTFI-------------GHHGEVNALKWNPTGSLLASC-------- 377 (524)
T ss_pred e-ecCC-------------CceEEEEEecCCCcceeee-------------cccCceEEEEECCCCceEEEe--------
Confidence 2 2221 23678887775443 2222 223455679999999866554
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCc---------eEEEEEeccccceEEEEEcCCCCCCCc
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSL---------ALVYESWYKTRRTRTWVISPGSKDVAP 495 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~---------~l~~~~~~~~~~~~l~~~d~~~~~~~~ 495 (954)
+....+-+|.. -++.....|..+...+..+.|||+|. .|+.++.+.. .++| |...+ .+
T Consensus 378 -----SdD~TlkiWs~--~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst--V~lw--dv~~g--v~ 444 (524)
T KOG0273|consen 378 -----SDDGTLKIWSM--GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST--VKLW--DVESG--VP 444 (524)
T ss_pred -----cCCCeeEeeec--CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe--EEEE--EccCC--ce
Confidence 33445666663 23444455666666677888888754 3444443332 3444 55553 44
Q ss_pred EEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccc
Q 002194 496 RILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKY 575 (954)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 575 (954)
...+..+...+|+ ++|||+|+++++...+ ..+..|+..+++..+-...++. .
T Consensus 445 i~~f~kH~~pVys------vafS~~g~ylAsGs~d---------------------g~V~iws~~~~~l~~s~~~~~~-I 496 (524)
T KOG0273|consen 445 IHTLMKHQEPVYS------VAFSPNGRYLASGSLD---------------------GCVHIWSTKTGKLVKSYQGTGG-I 496 (524)
T ss_pred eEeeccCCCceEE------EEecCCCcEEEecCCC---------------------CeeEeccccchheeEeecCCCe-E
Confidence 5556566667777 8999999999998732 2388899988887665554432 1
Q ss_pred cceeEEeccCCccccccccCCEEEEEEe
Q 002194 576 YETTVALMSDQTEGDLYLNQLKILTSKE 603 (954)
Q Consensus 576 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (954)
+ ...|+.+|+++....+
T Consensus 497 f-----------el~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 497 F-----------ELCWNAAGDKLGACAS 513 (524)
T ss_pred E-----------EEEEcCCCCEEEEEec
Confidence 1 2457777877665444
|
|
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-09 Score=115.50 Aligned_cols=173 Identities=16% Similarity=0.163 Sum_probs=106.7
Q ss_pred CcEEEEcCCCCCCCCCC-cccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEE--
Q 002194 712 GFAILGGPTTPIIGEGD-EEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI-- 788 (954)
Q Consensus 712 G~~V~~~~~~~~~G~G~-~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v-- 788 (954)
|+.|++ .+..|+|. +..+... .....+....+..+..... .+++.++|||+||.+|+.+|+.+|+.++.+|
T Consensus 86 ~~~v~a---iDl~G~g~~s~~~~~~-~y~~~~~v~~i~~~~~~~~--~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~ 159 (326)
T KOG1454|consen 86 GLRVLA---IDLPGHGYSSPLPRGP-LYTLRELVELIRRFVKEVF--VEPVSLVGHSLGGIVALKAAAYYPETVDSLVLL 159 (326)
T ss_pred ceEEEE---EecCCCCcCCCCCCCC-ceehhHHHHHHHHHHHhhc--CcceEEEEeCcHHHHHHHHHHhCcccccceeee
Confidence 699999 66667773 3222211 1223333333333333322 2459999999999999999999999999999
Q ss_pred -EeccCCCCCCC--------------------CC------C-Ccc-----------ccchhhhcH--------------H
Q 002194 789 -ARSGAYNRTLT--------------------PF------G-FQN-----------EDRTLWEAT--------------S 815 (954)
Q Consensus 789 -~~~~~~~~~~~--------------------~~------~-~~~-----------~~~~~~~~~--------------~ 815 (954)
...+.+...-. +. . +.. .....++.. +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (326)
T KOG1454|consen 160 DLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEGLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRD 239 (326)
T ss_pred cccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHhhhcceeeeccccccchhhhhhheecccccchhhh
Confidence 44443221000 00 0 000 000000000 0
Q ss_pred HHH---------hcCcccccCCCC-CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHH
Q 002194 816 TYV---------EMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH 885 (954)
Q Consensus 816 ~~~---------~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~ 885 (954)
.+. +......+.++. +|+||++|+.|..+| .+.+.++.+.+ .++++++++++||... .+..+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p--~~~~~~~~~~~----pn~~~~~I~~~gH~~h-~e~Pe~ 312 (326)
T KOG1454|consen 240 ARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVP--LELAEELKKKL----PNAELVEIPGAGHLPH-LERPEE 312 (326)
T ss_pred heeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccC--HHHHHHHHhhC----CCceEEEeCCCCcccc-cCCHHH
Confidence 000 012233455666 999999999999998 77666665554 4579999999999875 477889
Q ss_pred HHHHHHHHHHHh
Q 002194 886 VLWETDRWLQKY 897 (954)
Q Consensus 886 ~~~~i~~fl~~~ 897 (954)
+...|..|+.++
T Consensus 313 ~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 313 VAALLRSFIARL 324 (326)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2e-09 Score=124.74 Aligned_cols=113 Identities=11% Similarity=0.152 Sum_probs=81.1
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCC
Q 002194 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (954)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~ 188 (954)
..+.++++||||+++||+... .+.+.+.. ..||+.+. + +..++++ .+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~-------------------~~~~~d~~------s~Lwv~~~--g---g~~~~lt---~g 396 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTL-------------------GRGAPDPA------SSLWVGPL--G---GVAVQVL---EG 396 (591)
T ss_pred cCcccceECCCCCEEEEEEee-------------------cCCCCCcc------eEEEEEeC--C---Ccceeee---cC
Confidence 356789999999999999864 33222322 38999886 2 3446664 23
Q ss_pred CcccceeecCCCCeEEEEEeecc---ccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDA---EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~---~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
.....|+|||||++|+|..+... ....++..+||++++++++.++ ..+.. +..+.|||||++|++.
T Consensus 397 ~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~-----Issl~wSpDG~RiA~i 465 (591)
T PRK13616 397 HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGP-----ISELQLSRDGVRAAMI 465 (591)
T ss_pred CCCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCC-----cCeEEECCCCCEEEEE
Confidence 35889999999999999864211 1223456799999999988876 22322 7899999999999998
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.9e-09 Score=100.24 Aligned_cols=207 Identities=18% Similarity=0.189 Sum_probs=122.3
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..|.+|++.. ++...-+. .........|||||+++++... ...|-.+|...-+...-......
T Consensus 87 k~ir~wd~r~----~k~~~~i~--~~~eni~i~wsp~g~~~~~~~k---------dD~it~id~r~~~~~~~~~~~~e-- 149 (313)
T KOG1407|consen 87 KTIRIWDIRS----GKCTARIE--TKGENINITWSPDGEYIAVGNK---------DDRITFIDARTYKIVNEEQFKFE-- 149 (313)
T ss_pred ceEEEEEecc----CcEEEEee--ccCcceEEEEcCCCCEEEEecC---------cccEEEEEecccceeehhcccce--
Confidence 4789999864 33333222 2234677899999999999653 45677777655433222111211
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeC
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD 322 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~ 322 (954)
+..+.|.-++..++.+ .. . |.-+|..+..=
T Consensus 150 ---~ne~~w~~~nd~Fflt-~G--------------------l--------------------------G~v~ILsypsL 179 (313)
T KOG1407|consen 150 ---VNEISWNNSNDLFFLT-NG--------------------L--------------------------GCVEILSYPSL 179 (313)
T ss_pred ---eeeeeecCCCCEEEEe-cC--------------------C--------------------------ceEEEEecccc
Confidence 4578899777766654 10 0 22223333211
Q ss_pred CceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccC
Q 002194 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 323 G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
..+..|... ..-.-+.|+||||++|..+.+. -+.+||++.-. .|.++.+. ..
T Consensus 180 kpv~si~AH~snCicI~f~p~GryfA~GsADA-------------lvSLWD~~ELiC~R~isRld-------------wp 233 (313)
T KOG1407|consen 180 KPVQSIKAHPSNCICIEFDPDGRYFATGSADA-------------LVSLWDVDELICERCISRLD-------------WP 233 (313)
T ss_pred ccccccccCCcceEEEEECCCCceEeeccccc-------------eeeccChhHhhhheeecccc-------------Cc
Confidence 112222222 4455678999999999988543 67899988432 23344432 45
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT 478 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~ 478 (954)
+|.++||.||+.|+-. ++..-|=+..+ .+|.+...+ ..++....++|.|..-.|+|+..++.
T Consensus 234 VRTlSFS~dg~~lASa-------------SEDh~IDIA~v--etGd~~~eI-~~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 234 VRTLSFSHDGRMLASA-------------SEDHFIDIAEV--ETGDRVWEI-PCEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred eEEEEeccCcceeecc-------------CccceEEeEec--ccCCeEEEe-eccCCceeEEecCCCceeeEEecCCC
Confidence 6889999999987765 22222222222 133333332 34555678999999999999987654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.7e-09 Score=105.09 Aligned_cols=215 Identities=18% Similarity=0.207 Sum_probs=132.6
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCC
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (954)
...|||+|++||..+ ..+|.+.|.++-+..++...-.. +.-+.|+.|.-.|.+...
T Consensus 13 ~c~fSp~g~yiAs~~----------~yrlviRd~~tlq~~qlf~cldk-----i~yieW~ads~~ilC~~y--------- 68 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS----------RYRLVIRDSETLQLHQLFLCLDK-----IVYIEWKADSCHILCVAY--------- 68 (447)
T ss_pred ceeECCCCCeeeeee----------eeEEEEeccchhhHHHHHHHHHH-----hhheeeeccceeeeeeee---------
Confidence 568999999999987 45899999888777776543322 557889999988887611
Q ss_pred CCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-ccccccccCCCCcEEEEE
Q 002194 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYILIS 349 (954)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~-~~~~~~~~SpDGk~l~~~ 349 (954)
....+.++++ .-+ .-.|..+ .+.....||||||.|+.+
T Consensus 69 ---------------------------------------k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~t 109 (447)
T KOG4497|consen 69 ---------------------------------------KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLT 109 (447)
T ss_pred ---------------------------------------ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeee
Confidence 1122445555 222 2345555 778899999999999988
Q ss_pred eecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccc
Q 002194 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEV 429 (954)
Q Consensus 350 s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~ 429 (954)
+. |.-.|.+|.+.+.....+.... .++..++|.|||+..+... +.|-.+.
T Consensus 110 se------------F~lriTVWSL~t~~~~~~~~pK-------------~~~kg~~f~~dg~f~ai~s-RrDCkdy---- 159 (447)
T KOG4497|consen 110 SE------------FDLRITVWSLNTQKGYLLPHPK-------------TNVKGYAFHPDGQFCAILS-RRDCKDY---- 159 (447)
T ss_pred ec------------ceeEEEEEEeccceeEEecccc-------------cCceeEEECCCCceeeeee-cccHHHH----
Confidence 72 3448889999887766555432 3445789999999665542 2222111
Q ss_pred cCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCC
Q 002194 430 TPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSD 509 (954)
Q Consensus 430 ~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~ 509 (954)
-.|.... +=.-.+...-...+..++-|||||..|+.-.+--. ..+|...-..| +.+
T Consensus 160 ---v~i~~c~----~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le--ykv~aYe~~lG-----~k~---------- 215 (447)
T KOG4497|consen 160 ---VQISSCK----AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE--YKVYAYERGLG-----LKF---------- 215 (447)
T ss_pred ---HHHHhhH----HHHHHHhcCCCcccccCceECCCCcEEEEecchhh--heeeeeeeccc-----eeE----------
Confidence 0111000 00000111112334567899999999987543222 34554443332 111
Q ss_pred CCCCCeeeccCCcEEEEEEe
Q 002194 510 PGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 510 ~~~~~~~~spdG~~l~~~~~ 529 (954)
+.|||-++.|+....
T Consensus 216 -----v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 216 -----VEWSPCNQFLAVGSY 230 (447)
T ss_pred -----EEeccccceEEeecc
Confidence 678898888887763
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.3e-08 Score=109.06 Aligned_cols=251 Identities=12% Similarity=0.055 Sum_probs=143.4
Q ss_pred ceEEEEEe-CCceeEcC-CCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE--EEeccCCCccc
Q 002194 314 TQLVLVSL-DGTVKEIG-PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAED 389 (954)
Q Consensus 314 ~~l~~~~~-~G~~~~l~-~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~--~~l~~~~~~~~ 389 (954)
..|+++|+ +|+...-. .......+.|++||+.++|+......... ...++.+++.+.+.+... +.|...+...
T Consensus 150 ~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~--~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~- 226 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTS--DSGYPRQVYRHKLGTPQSEDELVFEEPDEP- 226 (414)
T ss_dssp EEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS---CCGCCEEEEEEETTS-GGG-EEEEC-TTCT-
T ss_pred EEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccc--cCCCCcEEEEEECCCChHhCeeEEeecCCC-
Confidence 46889999 88433211 11222338999999999999866531100 122355888888875432 2333322110
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCC-----CCceEEeeccccc-Cceee
Q 002194 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG-----EGPEILHKLDLRY-GGISW 463 (954)
Q Consensus 390 ~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g-----~~~~~l~~~~~~~-~~~~~ 463 (954)
.....+..|+||+.+++..... .....+|++++ .. .+.+.+....... ..+..
T Consensus 227 ---------~~~~~~~~s~d~~~l~i~~~~~---------~~~s~v~~~d~---~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 227 ---------FWFVSVSRSKDGRYLFISSSSG---------TSESEVYLLDL---DDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp ---------TSEEEEEE-TTSSEEEEEEESS---------SSEEEEEEEEC---CCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred ---------cEEEEEEecCcccEEEEEEEcc---------ccCCeEEEEec---cccCCCcCCcEEEeCCCCceEEEEEc
Confidence 0023577899999776653221 11357999996 33 3556665533222 23333
Q ss_pred ccCCceEEEEEeccccceEEEEEcCCCCCC-CcE-EEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEe
Q 002194 464 CDDSLALVYESWYKTRRTRTWVISPGSKDV-APR-ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLN 541 (954)
Q Consensus 464 spDg~~l~~~~~~~~~~~~l~~~d~~~~~~-~~~-~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~ 541 (954)
. |..+++.++.+..+.+|+.++++.... ... .+......... -.++..+.+|+.....
T Consensus 286 ~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~Lvl~~~~----------- 345 (414)
T PF02897_consen 286 H--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL-------EDVSLFKDYLVLSYRE----------- 345 (414)
T ss_dssp E--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE-------EEEEEETTEEEEEEEE-----------
T ss_pred c--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE-------EEEEEECCEEEEEEEE-----------
Confidence 3 777888877766678999999988632 112 33322211111 2345556666665532
Q ss_pred cCCCCCCCCCCeEEEEECC-CCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCc
Q 002194 542 GNGATPEGNIPFLDLFDIN-TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (954)
Q Consensus 542 ~~~~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~ 620 (954)
.....|+++++. +.....+...... .+.. .+.+++++.+++..++...|+.+|.+|+.+++
T Consensus 346 -------~~~~~l~v~~~~~~~~~~~~~~p~~g----~v~~-------~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 346 -------NGSSRLRVYDLDDGKESREIPLPEAG----SVSG-------VSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp -------TTEEEEEEEETT-TEEEEEEESSSSS----EEEE-------EES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred -------CCccEEEEEECCCCcEEeeecCCcce----EEec-------cCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 135679999999 5555555544422 1111 23456789999999999999999999999999
Q ss_pred eeEeec
Q 002194 621 SCQITD 626 (954)
Q Consensus 621 ~~~Lt~ 626 (954)
.+.|..
T Consensus 408 ~~~~k~ 413 (414)
T PF02897_consen 408 LTLLKQ 413 (414)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 888763
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-07 Score=101.23 Aligned_cols=341 Identities=13% Similarity=0.168 Sum_probs=187.4
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
-+.+.|||-|.+|+..-.+ +|.+|- | ..-.++..+.+ ..
T Consensus 213 etyv~wSP~GTYL~t~Hk~----------------------------------GI~lWG----G--~~f~r~~RF~H-p~ 251 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQ----------------------------------GIALWG----G--ESFDRIQRFYH-PG 251 (698)
T ss_pred eeeEEecCCceEEEEEecc----------------------------------ceeeec----C--ccHHHHHhccC-CC
Confidence 3578999999999876653 666763 2 12223333332 26
Q ss_pred ccceeecCCCCeEEEEEeecc--ccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDA--EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~--~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
+....|||.-++|+.-+.... ..+.++..+|.++|+.+|...+-+....... .....+.||.|+++++.....
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~-~~WP~frWS~DdKy~Arm~~~---- 326 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPY-LKWPIFRWSHDDKYFARMTGN---- 326 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCc-cccceEEeccCCceeEEeccc----
Confidence 888999999999887664332 2345677899999999998766554422110 013368899999999976110
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCCccccccccCCCCcEEEE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILI 348 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (954)
....+.+..+.++ +++.-.+ .++..+.|||-+..|||
T Consensus 327 --------------------------------------sisIyEtpsf~ll--d~Kslki---~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 327 --------------------------------------SISIYETPSFMLL--DKKSLKI---SGIRDFSWSPTSNLLAY 363 (698)
T ss_pred --------------------------------------eEEEEecCceeee--cccccCC---ccccCcccCCCcceEEE
Confidence 0000111112222 2222222 56889999999999999
Q ss_pred EeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
-.-... ..+..+-|..+-.+ +++...-.... --.+.|-..|.+|.+-+++...+...-
T Consensus 364 wtpe~~--------~~parvtL~evPs~~~iRt~nlfnVs-------------DckLhWQk~gdyLcvkvdR~tK~~~~g 422 (698)
T KOG2314|consen 364 WTPETN--------NIPARVTLMEVPSKREIRTKNLFNVS-------------DCKLHWQKSGDYLCVKVDRHTKSKVKG 422 (698)
T ss_pred Eccccc--------CCcceEEEEecCccceeeeccceeee-------------ccEEEeccCCcEEEEEEEeeccccccc
Confidence 873321 12335555655533 22221111111 124789999999988866543221000
Q ss_pred cccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEecc-ccceEEEEEcCCCCCCCcEEEecCCCCCc
Q 002194 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK-TRRTRTWVISPGSKDVAPRILFDRSSEDV 506 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~-~~~~~l~~~d~~~~~~~~~~l~~~~~~~~ 506 (954)
..+ +-.|+.++ ...-+.........+-..+|-|.|..++..+... ....+.|.+....+ .+..+........
T Consensus 423 ~f~-n~eIfrir----eKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~--~~~lVk~~dk~~~ 495 (698)
T KOG2314|consen 423 QFS-NLEIFRIR----EKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK--KPSLVKELDKKFA 495 (698)
T ss_pred eEe-eEEEEEee----ccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC--chhhhhhhccccc
Confidence 000 11344443 2222222223333456689999998877655332 23467787776553 3333322221111
Q ss_pred cCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCC
Q 002194 507 YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQ 586 (954)
Q Consensus 507 ~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 586 (954)
. .+.|||.|++++...... ....|+-+|++-...+++-..+ . ...
T Consensus 496 N------~vfwsPkG~fvvva~l~s------------------~~g~l~F~D~~~a~~k~~~~~e-h----------~~a 540 (698)
T KOG2314|consen 496 N------TVFWSPKGRFVVVAALVS------------------RRGDLEFYDTDYADLKDTASPE-H----------FAA 540 (698)
T ss_pred c------eEEEcCCCcEEEEEEecc------------------cccceEEEecchhhhhhccCcc-c----------ccc
Confidence 1 178999999999887421 2234788887642332222222 0 011
Q ss_pred ccccccccCCEEEEEEe
Q 002194 587 TEGDLYLNQLKILTSKE 603 (954)
Q Consensus 587 ~~~~~s~dg~~l~~~~~ 603 (954)
....|+|.|++++...+
T Consensus 541 t~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 541 TEVEWDPTGRYVVTSSS 557 (698)
T ss_pred ccceECCCCCEEEEeee
Confidence 23568888887664443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.6e-09 Score=103.26 Aligned_cols=140 Identities=18% Similarity=0.142 Sum_probs=89.2
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002194 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (954)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~ 192 (954)
.-.|||+|++||..++- .+.|.|..+ -+..+|-.. -..+.
T Consensus 13 ~c~fSp~g~yiAs~~~y----------------------------------rlviRd~~t----lq~~qlf~c--ldki~ 52 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY----------------------------------RLVIRDSET----LQLHQLFLC--LDKIV 52 (447)
T ss_pred ceeECCCCCeeeeeeee----------------------------------EEEEeccch----hhHHHHHHH--HHHhh
Confidence 67899999999998862 566766533 333333211 12688
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCC
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (954)
..-|+.|..+|+-... . ..-|.++++..-+-.--.+.+. +++....|||||+.|..++.
T Consensus 53 yieW~ads~~ilC~~y------k--~~~vqvwsl~Qpew~ckIdeg~----agls~~~WSPdgrhiL~tse--------- 111 (447)
T KOG4497|consen 53 YIEWKADSCHILCVAY------K--DPKVQVWSLVQPEWYCKIDEGQ----AGLSSISWSPDGRHILLTSE--------- 111 (447)
T ss_pred heeeeccceeeeeeee------c--cceEEEEEeecceeEEEeccCC----CcceeeeECCCcceEeeeec---------
Confidence 8999999999987653 2 2345555554433322222222 22778999999988886510
Q ss_pred CCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEe
Q 002194 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISS 350 (954)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s 350 (954)
...+|-++.+ +.+...+..+ .....++|.|||++.+..+
T Consensus 112 ---------------------------------------F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 112 ---------------------------------------FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred ---------------------------------------ceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeee
Confidence 1123445555 5555555555 5567899999999999887
Q ss_pred ec
Q 002194 351 IH 352 (954)
Q Consensus 351 ~~ 352 (954)
.+
T Consensus 153 Rr 154 (447)
T KOG4497|consen 153 RR 154 (447)
T ss_pred cc
Confidence 54
|
|
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.7e-09 Score=115.67 Aligned_cols=69 Identities=10% Similarity=0.126 Sum_probs=57.2
Q ss_pred ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC-CCCcCCCcccHHHHHHHHHHHHHH
Q 002194 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF-ESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.+.++++|+|+|+|+.|..+| ++.++++.+.+...+.+++++++++ .||... .+....+.+.|.+||++
T Consensus 318 ~L~~I~~PtLvI~G~~D~l~p--~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~-le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 318 ALSNIEANVLMIPCKQDLLQP--PRYNYKMVDILQKQGKYAEVYEIESINGHMAG-VFDIHLFEKKIYEFLNR 387 (389)
T ss_pred HHhcCCCCEEEEEeCCCCCCC--HHHHHHHHHHhhhcCCCeEEEEECCCCCcchh-hcCHHHHHHHHHHHHcc
Confidence 455789999999999999998 8999999998887666789999985 899864 56667788888888764
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.1e-08 Score=96.99 Aligned_cols=271 Identities=12% Similarity=0.078 Sum_probs=170.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
++....|+|||..+|....+ ..|.+|++- |.......++++. +
T Consensus 49 eI~~~~F~P~gs~~aSgG~D---------------------------------r~I~LWnv~--gdceN~~~lkgHs--g 91 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSD---------------------------------RAIVLWNVY--GDCENFWVLKGHS--G 91 (338)
T ss_pred eEEEEEECCCCCeEeecCCc---------------------------------ceEEEEecc--ccccceeeecccc--c
Confidence 35567899999999887765 589999984 3334555666532 4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..+.|.+||..|+-+.. ...|+.+|+++|+..+-....... +..+.-+.=|-.++.+..
T Consensus 92 AVM~l~~~~d~s~i~S~gt---------Dk~v~~wD~~tG~~~rk~k~h~~~----vNs~~p~rrg~~lv~Sgs------ 152 (338)
T KOG0265|consen 92 AVMELHGMRDGSHILSCGT---------DKTVRGWDAETGKRIRKHKGHTSF----VNSLDPSRRGPQLVCSGS------ 152 (338)
T ss_pred eeEeeeeccCCCEEEEecC---------CceEEEEecccceeeehhccccce----eeecCccccCCeEEEecC------
Confidence 7899999999999988653 678999999998876554433332 344443334555555410
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCCccccccccCCCCcEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEKYIL 347 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~~~~~~~~~SpDGk~l~ 347 (954)
...++-++|. .. .++.+.+....+.+.|..++..+.
T Consensus 153 ------------------------------------------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 153 ------------------------------------------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVI 190 (338)
T ss_pred ------------------------------------------CCceEEEEeecccchhhccccceeEEEEEeccccccee
Confidence 1234556676 44 344444447788899998888876
Q ss_pred EEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
...- +++|.+||+..++...+... ...-+..+..||+|..+.--
T Consensus 191 sggI-------------dn~ikvWd~r~~d~~~~lsG------------h~DtIt~lsls~~gs~llsn----------- 234 (338)
T KOG0265|consen 191 SGGI-------------DNDIKVWDLRKNDGLYTLSG------------HADTITGLSLSRYGSFLLSN----------- 234 (338)
T ss_pred eccc-------------cCceeeeccccCcceEEeec------------ccCceeeEEeccCCCccccc-----------
Confidence 6553 34899999976555444432 22334678899999865433
Q ss_pred cccCCCeEEEEecCCCCCCCc-eEEe-eccc----ccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecC
Q 002194 428 EVTPRDIIYTQQAEPVQGEGP-EILH-KLDL----RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~-~~l~-~~~~----~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 501 (954)
+-...+.+|++.|...++. ..+. .... ..-..+|||+++.+-+.+.++ .+|++|..+. ...-...+
T Consensus 235 --sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr----~vyvwd~~~r--~~lyklpG 306 (338)
T KOG0265|consen 235 --SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR----FVYVWDTTSR--RILYKLPG 306 (338)
T ss_pred --cccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccc----eEEEeecccc--cEEEEcCC
Confidence 2245777888767766555 3332 2222 223479999999998876543 4777777652 11112223
Q ss_pred CCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 502 SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 502 ~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
....+.. +.|.|....|....
T Consensus 307 h~gsvn~------~~Fhp~e~iils~~ 327 (338)
T KOG0265|consen 307 HYGSVNE------VDFHPTEPIILSCS 327 (338)
T ss_pred cceeEEE------eeecCCCcEEEEec
Confidence 3332222 67888887766654
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4e-07 Score=93.79 Aligned_cols=253 Identities=9% Similarity=0.063 Sum_probs=144.8
Q ss_pred eEEEEEe-CCceeEcCCC----ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEe---ccCC
Q 002194 315 QLVLVSL-DGTVKEIGPP----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVREL---CDLP 385 (954)
Q Consensus 315 ~l~~~~~-~G~~~~l~~~----~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l---~~~~ 385 (954)
.-|.+|- +|+.+.+... .....+++++||++|+...... +.|.++.++. +.+..+ ..+.
T Consensus 67 aay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~------------g~v~v~p~~~dG~l~~~v~~~~h~ 134 (346)
T COG2706 67 AAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS------------GSVSVYPLQADGSLQPVVQVVKHT 134 (346)
T ss_pred EEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC------------ceEEEEEcccCCccccceeeeecC
Confidence 3556665 6877766543 2336789999999988877543 2566666642 222211 1111
Q ss_pred CcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe----ecccccCce
Q 002194 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH----KLDLRYGGI 461 (954)
Q Consensus 386 ~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~----~~~~~~~~~ 461 (954)
.. .|. ......-+-...++|||+.++.. + -+.++|+++++ +.+...... ......+.+
T Consensus 135 g~--~p~-~rQ~~~h~H~a~~tP~~~~l~v~-D-----------LG~Dri~~y~~---~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 135 GS--GPH-ERQESPHVHSANFTPDGRYLVVP-D-----------LGTDRIFLYDL---DDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred CC--CCC-ccccCCccceeeeCCCCCEEEEe-e-----------cCCceEEEEEc---ccCccccccccccCCCCCcceE
Confidence 11 011 00000002346799999966554 1 23568999997 333332221 223345679
Q ss_pred eeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEe
Q 002194 462 SWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLN 541 (954)
Q Consensus 462 ~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~ 541 (954)
.|.|+|+..+...+-+ ....+|.++...+..+..+....-..+..+.+....+..|+||++|+....+-
T Consensus 197 ~FHpn~k~aY~v~EL~-stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~---------- 265 (346)
T COG2706 197 VFHPNGKYAYLVNELN-STVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH---------- 265 (346)
T ss_pred EEcCCCcEEEEEeccC-CEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC----------
Confidence 9999999766654433 34778888876553333332222223333333334478899999988765322
Q ss_pred cCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCce
Q 002194 542 GNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (954)
Q Consensus 542 ~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~ 621 (954)
+...++.+|.++|+...+....-+ ..+ -.+..|+++|+.|++..+.... -.+|.++..+|+.
T Consensus 266 --------dsI~~f~V~~~~g~L~~~~~~~te-------g~~--PR~F~i~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L 327 (346)
T COG2706 266 --------DSIAVFSVDPDGGKLELVGITPTE-------GQF--PRDFNINPSGRFLIAANQKSDN-ITVFERDKETGRL 327 (346)
T ss_pred --------CeEEEEEEcCCCCEEEEEEEeccC-------CcC--CccceeCCCCCEEEEEccCCCc-EEEEEEcCCCceE
Confidence 123477778888876655332211 000 1135788999888877775553 6788889888877
Q ss_pred eEeec
Q 002194 622 CQITD 626 (954)
Q Consensus 622 ~~Lt~ 626 (954)
..+..
T Consensus 328 ~~~~~ 332 (346)
T COG2706 328 TLLGR 332 (346)
T ss_pred Eeccc
Confidence 76654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-08 Score=118.02 Aligned_cols=104 Identities=18% Similarity=0.181 Sum_probs=72.0
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+..+.||||+.+++-.+- ...|.+++..+.+...++.....- +..+.|-|=|++|+..
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~---------DnsViiwn~~tF~~~~vl~~H~s~----VKGvs~DP~Gky~ASq------- 189 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSL---------DNSVIIWNAKTFELLKVLRGHQSL----VKGVSWDPIGKYFASQ------- 189 (942)
T ss_pred CccceeccCCCccEEEEecc---------cceEEEEccccceeeeeeeccccc----ccceEECCccCeeeee-------
Confidence 47899999999999988653 567788888877666665555432 6789999999999966
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-------ccccccccCC
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-------AVYTSLDPSP 341 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-------~~~~~~~~Sp 341 (954)
+.+ .+-.+|+.+--|-.+.++.+ ..+..+.|||
T Consensus 190 --------------sdD--------------------------rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 190 --------------SDD--------------------------RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP 229 (942)
T ss_pred --------------cCC--------------------------ceEEEEEcccceeeEeeccchhhCCCcceeeecccCC
Confidence 111 12224442224555666554 3456899999
Q ss_pred CCcEEEEEeec
Q 002194 342 DEKYILISSIH 352 (954)
Q Consensus 342 DGk~l~~~s~~ 352 (954)
||++|+.....
T Consensus 230 DG~~las~nA~ 240 (942)
T KOG0973|consen 230 DGHHLASPNAV 240 (942)
T ss_pred CcCeecchhhc
Confidence 99999986543
|
|
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-08 Score=109.18 Aligned_cols=191 Identities=23% Similarity=0.252 Sum_probs=121.1
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhC-
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHA- 780 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~- 780 (954)
.+...|+++||+|+.+|| .|.|..+.........+-|.++|+..+... +.....+++++|+|.||..+++++...
T Consensus 17 ~~l~~~L~~GyaVv~pDY---~Glg~~y~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~~ 93 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDY---EGLGTPYLNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELAP 93 (290)
T ss_pred HHHHHHHHCCCEEEecCC---CCCCCcccCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHhH
Confidence 456678899999999666 455544333333445566666666666543 322346899999999999998887543
Q ss_pred ---CCc---ccEEEEeccCCCCCCC-------CC-------------CCcccc-----------chhh------------
Q 002194 781 ---PHL---FCCGIARSGAYNRTLT-------PF-------------GFQNED-----------RTLW------------ 811 (954)
Q Consensus 781 ---p~~---~~a~v~~~~~~~~~~~-------~~-------------~~~~~~-----------~~~~------------ 811 (954)
|++ +.++++.+++.|.... .+ .++... ....
T Consensus 94 ~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~~~ 173 (290)
T PF03583_consen 94 SYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLADIV 173 (290)
T ss_pred HhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHHHH
Confidence 444 6788887776652110 00 000000 0000
Q ss_pred -----------------------hcH---HHHHhcCc-ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC-C
Q 002194 812 -----------------------EAT---STYVEMSP-FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-A 863 (954)
Q Consensus 812 -----------------------~~~---~~~~~~sp-~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g-~ 863 (954)
.++ ..+.+++. ...-..-+.|+||.||..|.+|| +....++++++...| .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP--~~~~~~l~~~~c~~G~a 251 (290)
T PF03583_consen 174 AEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVP--PADTDALVAKWCAAGGA 251 (290)
T ss_pred HHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCC--hHHHHHHHHHHHHcCCC
Confidence 000 00111111 00011225799999999999999 999999999999999 8
Q ss_pred cEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcccCC
Q 002194 864 LCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 864 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
+++++.+++.+|...... .....++||...+...+
T Consensus 252 ~V~~~~~~~~~H~~~~~~----~~~~a~~Wl~~rf~G~~ 286 (290)
T PF03583_consen 252 DVEYVRYPGGGHLGAAFA----SAPDALAWLDDRFAGKP 286 (290)
T ss_pred CEEEEecCCCChhhhhhc----CcHHHHHHHHHHHCCCC
Confidence 999999999999753222 23567899999987654
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-08 Score=106.62 Aligned_cols=279 Identities=11% Similarity=0.056 Sum_probs=161.7
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCe-EEEEEecCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST-LLVCTIPLLRG 267 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~-~l~~~~~~~~~ 267 (954)
..+..+.|.|.-. |+.+.. -++..+||-+|-.... .|+...-.. -.+....|+|+|+ .|+++.
T Consensus 214 ~~I~sv~FHp~~p-lllvaG------~d~~lrifqvDGk~N~--~lqS~~l~~--fPi~~a~f~p~G~~~i~~s~----- 277 (514)
T KOG2055|consen 214 GGITSVQFHPTAP-LLLVAG------LDGTLRIFQVDGKVNP--KLQSIHLEK--FPIQKAEFAPNGHSVIFTSG----- 277 (514)
T ss_pred CCceEEEecCCCc-eEEEec------CCCcEEEEEecCccCh--hheeeeecc--CccceeeecCCCceEEEecc-----
Confidence 4788899999655 444432 3457777777644333 333222111 0256788999999 555440
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-----ccccccccCC
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-----AVYTSLDPSP 341 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-----~~~~~~~~Sp 341 (954)
...-+|.+|+ +++...+... .....+..||
T Consensus 278 --------------------------------------------rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh 313 (514)
T KOG2055|consen 278 --------------------------------------------RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH 313 (514)
T ss_pred --------------------------------------------cceEEEEeeccccccccccCCCCcccchhheeEecC
Confidence 1234889999 8877776654 3567889999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
|+++|++....+ .|.|.-..+++. |+... ..+.+..+.|+.||+.|+..
T Consensus 314 d~~fia~~G~~G-------------~I~lLhakT~el--i~s~K-----------ieG~v~~~~fsSdsk~l~~~----- 362 (514)
T KOG2055|consen 314 DSNFIAIAGNNG-------------HIHLLHAKTKEL--ITSFK-----------IEGVVSDFTFSSDSKELLAS----- 362 (514)
T ss_pred CCCeEEEcccCc-------------eEEeehhhhhhh--hheee-----------eccEEeeEEEecCCcEEEEE-----
Confidence 999999987432 566665554432 22211 11345679999999877766
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCceEEeeccccc--CceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRY--GGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~--~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 499 (954)
.+.+.||+|++ ........-..++.+ ..++.|++|++++..++.+ -..||..+..-...+|+.+.
T Consensus 363 --------~~~GeV~v~nl---~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G--iVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 363 --------GGTGEVYVWNL---RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG--IVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred --------cCCceEEEEec---CCcceEEEEeecCccceeeeeecCCCceEEeccCcc--eEEEeccchhhccCCCCchh
Confidence 55779999997 332222222233334 3467789999888876543 25566543211112333332
Q ss_pred c--CCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccc
Q 002194 500 D--RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 577 (954)
Q Consensus 500 ~--~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 577 (954)
. .-...+.+ ++|++|+..|+..+.. ....|.++.+.+-.+-.-|.....+.-
T Consensus 430 ~~dNLtt~Its------l~Fn~d~qiLAiaS~~-------------------~knalrLVHvPS~TVFsNfP~~n~~vg- 483 (514)
T KOG2055|consen 430 TVDNLTTAITS------LQFNHDAQILAIASRV-------------------KKNALRLVHVPSCTVFSNFPTSNTKVG- 483 (514)
T ss_pred hhhhhheeeee------eeeCcchhhhhhhhhc-------------------cccceEEEeccceeeeccCCCCCCccc-
Confidence 1 11111222 8899999988887632 123466666655443333333322111
Q ss_pred eeEEeccCCccccccccCCEEEEEEec
Q 002194 578 TTVALMSDQTEGDLYLNQLKILTSKES 604 (954)
Q Consensus 578 ~~~~~~~~~~~~~~s~dg~~l~~~~~s 604 (954)
.+. -.+|||.|+++++-...
T Consensus 484 ~vt-------c~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 484 HVT-------CMAFSPNSGYLAVGNEA 503 (514)
T ss_pred ceE-------EEEecCCCceEEeecCC
Confidence 111 14799999988875554
|
|
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-09 Score=101.82 Aligned_cols=197 Identities=17% Similarity=0.186 Sum_probs=132.6
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
.+.+.+.|-. .| .-..-++.|.+ ..|++|++|||++..++....+ ..+.....+||+|.
T Consensus 43 ~r~e~l~Yg~-~g-~q~VDIwg~~~-------~~klfIfIHGGYW~~g~rk~cl------------siv~~a~~~gY~va 101 (270)
T KOG4627|consen 43 IRVEHLRYGE-GG-RQLVDIWGSTN-------QAKLFIFIHGGYWQEGDRKMCL------------SIVGPAVRRGYRVA 101 (270)
T ss_pred cchhccccCC-CC-ceEEEEecCCC-------CccEEEEEecchhhcCchhccc------------chhhhhhhcCeEEE
Confidence 3455555542 22 22345666643 2689999999987655432211 12445678999999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCcccEEEEeccCCC
Q 002194 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYN 795 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~ 795 (954)
...| +.. ...+...+.+.++...++|+.+... ..+.+.+.|||.|+.+++.+.++. ..++.+++..+|+++
T Consensus 102 svgY------~l~-~q~htL~qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~ 173 (270)
T KOG4627|consen 102 SVGY------NLC-PQVHTLEQTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYD 173 (270)
T ss_pred Eecc------CcC-cccccHHHHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhh
Confidence 8333 222 1234568889999999999988642 346799999999999999988864 358999999999887
Q ss_pred CCC---C----CCCCccccchhhhcHHHHHhcCcc-cccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEE
Q 002194 796 RTL---T----PFGFQNEDRTLWEATSTYVEMSPF-MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRL 867 (954)
Q Consensus 796 ~~~---~----~~~~~~~~~~~~~~~~~~~~~sp~-~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~ 867 (954)
..- + ..++..+ ..+..|+. .....++.|+|++.+++|.- .++++.+.+...+++. ++
T Consensus 174 l~EL~~te~g~dlgLt~~---------~ae~~Scdl~~~~~v~~~ilVv~~~~esp--klieQnrdf~~q~~~a----~~ 238 (270)
T KOG4627|consen 174 LRELSNTESGNDLGLTER---------NAESVSCDLWEYTDVTVWILVVAAEHESP--KLIEQNRDFADQLRKA----SF 238 (270)
T ss_pred HHHHhCCccccccCcccc---------hhhhcCccHHHhcCceeeeeEeeecccCc--HHHHhhhhHHHHhhhc----ce
Confidence 321 1 1122111 11222221 23456788999999999975 5589999999998875 78
Q ss_pred EEeCCCCCcC
Q 002194 868 VILPFESHGY 877 (954)
Q Consensus 868 ~~~~~~~H~~ 877 (954)
..|++-+|.-
T Consensus 239 ~~f~n~~hy~ 248 (270)
T KOG4627|consen 239 TLFKNYDHYD 248 (270)
T ss_pred eecCCcchhh
Confidence 8899988853
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-07 Score=93.97 Aligned_cols=251 Identities=10% Similarity=0.039 Sum_probs=151.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+.++.||+||..++.++.+ ..|.|++... | .+.+.|.....
T Consensus 16 ~i~sl~fs~~G~~litss~d---------------------------------Dsl~LYd~~~-g--~~~~ti~skky-- 57 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSED---------------------------------DSLRLYDSLS-G--KQVKTINSKKY-- 57 (311)
T ss_pred ceeEEEecCCCCEEEEecCC---------------------------------CeEEEEEcCC-C--ceeeEeecccc--
Confidence 57789999999999997665 4789999853 3 33444433222
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....|.-....+.+.+. .....|..+++.+.+-.+.+.+.... +.++.-+|-+..+..++
T Consensus 58 G~~~~~Fth~~~~~i~sSt-------k~d~tIryLsl~dNkylRYF~GH~~~----V~sL~~sP~~d~FlS~S------- 119 (311)
T KOG1446|consen 58 GVDLACFTHHSNTVIHSST-------KEDDTIRYLSLHDNKYLRYFPGHKKR----VNSLSVSPKDDTFLSSS------- 119 (311)
T ss_pred cccEEEEecCCceEEEccC-------CCCCceEEEEeecCceEEEcCCCCce----EEEEEecCCCCeEEecc-------
Confidence 4666777666677777553 34578888899888888887766554 77888889887666541
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCccccccccCCCCcEEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (954)
. ...|..+|+ ..+-.-+-.-..-.-.++.|.|-.+|.
T Consensus 120 --------------~----------------------------D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 120 --------------L----------------------------DKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFAL 157 (311)
T ss_pred --------------c----------------------------CCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEE
Confidence 1 123444555 222111111112223689999966665
Q ss_pred EeecCCcccccccCCCCcceEEEeccC--ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g--~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
.... ..|.+||+.. +.+........ ........+.||||||.|+..
T Consensus 158 ~~~~-------------~~IkLyD~Rs~dkgPF~tf~i~~---------~~~~ew~~l~FS~dGK~iLls---------- 205 (311)
T KOG1446|consen 158 ANGS-------------ELIKLYDLRSFDKGPFTTFSITD---------NDEAEWTDLEFSPDGKSILLS---------- 205 (311)
T ss_pred ecCC-------------CeEEEEEecccCCCCceeEccCC---------CCccceeeeEEcCCCCEEEEE----------
Confidence 5522 1788999872 22221111110 111233578999999998887
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEeecccc---cCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecC
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLR---YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~---~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 501 (954)
...+.++++|+ .+|.....++..... .....|+|||+.|+..++++ +|.++++.++ ..+..+..
T Consensus 206 ---T~~s~~~~lDA--f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg----~i~vw~~~tg--~~v~~~~~ 272 (311)
T KOG1446|consen 206 ---TNASFIYLLDA--FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDG----TIHVWNLETG--KKVAVLRG 272 (311)
T ss_pred ---eCCCcEEEEEc--cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCC----cEEEEEcCCC--cEeeEecC
Confidence 34567889986 666533333332221 24578999999988876543 3455555664 33444444
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.4e-09 Score=103.87 Aligned_cols=126 Identities=13% Similarity=0.131 Sum_probs=84.9
Q ss_pred cccccceEEEEEe-CCceeEcCC--CccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCC
Q 002194 309 DYYATTQLVLVSL-DGTVKEIGP--PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP 385 (954)
Q Consensus 309 ~~~~~~~l~~~~~-~G~~~~l~~--~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~ 385 (954)
.+++...||.++. +.....+.. .+.+.+++|||+|+.+++..... +..+.+||+++..+..+..
T Consensus 34 s~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~-----------~~~v~lyd~~~~~i~~~~~-- 100 (194)
T PF08662_consen 34 SYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSM-----------PAKVTLYDVKGKKIFSFGT-- 100 (194)
T ss_pred eEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccC-----------CcccEEEcCcccEeEeecC--
Confidence 3446778999988 555555543 35689999999999998876322 3478999998655554432
Q ss_pred CcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe-ecccccCceeec
Q 002194 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWC 464 (954)
Q Consensus 386 ~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~s 464 (954)
.....+.|||+|+.+++.--. ...+.|.+||. . +...+. ........+.||
T Consensus 101 -------------~~~n~i~wsP~G~~l~~~g~~----------n~~G~l~~wd~---~--~~~~i~~~~~~~~t~~~Ws 152 (194)
T PF08662_consen 101 -------------QPRNTISWSPDGRFLVLAGFG----------NLNGDLEFWDV---R--KKKKISTFEHSDATDVEWS 152 (194)
T ss_pred -------------CCceEEEECCCCCEEEEEEcc----------CCCcEEEEEEC---C--CCEEeeccccCcEEEEEEc
Confidence 122468999999988876110 12356889996 3 333342 223345679999
Q ss_pred cCCceEEEEEe
Q 002194 465 DDSLALVYESW 475 (954)
Q Consensus 465 pDg~~l~~~~~ 475 (954)
|||++|+.+..
T Consensus 153 PdGr~~~ta~t 163 (194)
T PF08662_consen 153 PDGRYLATATT 163 (194)
T ss_pred CCCCEEEEEEe
Confidence 99999998754
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.6e-09 Score=116.12 Aligned_cols=145 Identities=9% Similarity=0.044 Sum_probs=98.5
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
..+..+.|+|-|-+.|..+.+ ++-.+|..+.....++... +...+.-+.|.|++.
T Consensus 494 ~PVwdV~F~P~GyYFatas~D-------------~tArLWs~d~~~PlRifag------------hlsDV~cv~FHPNs~ 548 (707)
T KOG0263|consen 494 APVWDVQFAPRGYYFATASHD-------------QTARLWSTDHNKPLRIFAG------------HLSDVDCVSFHPNSN 548 (707)
T ss_pred cceeeEEecCCceEEEecCCC-------------ceeeeeecccCCchhhhcc------------cccccceEEECCccc
Confidence 667788899999777766533 3556887775444443332 223345588999987
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+++-- +....+.+||+ .+|...|..+++...+..++|||+|++|+..+.+. .|.++|+.++
T Consensus 549 Y~aTG-------------SsD~tVRlWDv--~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~----~I~iWDl~~~ 609 (707)
T KOG0263|consen 549 YVATG-------------SSDRTVRLWDV--STGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG----LIKIWDLANG 609 (707)
T ss_pred ccccC-------------CCCceEEEEEc--CCCcEEEEecCCCCceEEEEEcCCCceEeecccCC----cEEEEEcCCC
Confidence 54322 33556788886 56667777788899999999999999999886554 3555566664
Q ss_pred CCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 492 ~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.+......+...+++ ++||.||..|+...
T Consensus 610 --~~v~~l~~Ht~ti~S------lsFS~dg~vLasgg 638 (707)
T KOG0263|consen 610 --SLVKQLKGHTGTIYS------LSFSRDGNVLASGG 638 (707)
T ss_pred --cchhhhhcccCceeE------EEEecCCCEEEecC
Confidence 233333334555565 89999999888776
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.9e-09 Score=126.69 Aligned_cols=212 Identities=14% Similarity=0.104 Sum_probs=121.1
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (954)
..+|..+..+.+-++ ..|.||++||.+... ..| . .+...| +.||.|++ ++..|
T Consensus 9 ~~~g~~l~~~~~g~~--------~~~~ivllHG~~~~~-----------~~w---~-~~~~~L-~~~~~Vi~---~D~~G 61 (582)
T PRK05855 9 SSDGVRLAVYEWGDP--------DRPTVVLVHGYPDNH-----------EVW---D-GVAPLL-ADRFRVVA---YDVRG 61 (582)
T ss_pred eeCCEEEEEEEcCCC--------CCCeEEEEcCCCchH-----------HHH---H-HHHHHh-hcceEEEE---ecCCC
Confidence 458888887665321 157899999964211 111 1 233344 78999999 66678
Q ss_pred CCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC--CCcccEEEEeccCC-CC--
Q 002194 726 EGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAY-NR-- 796 (954)
Q Consensus 726 ~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~-~~-- 796 (954)
+|.+.... .......+|+..+++.+. . ..++.++||||||.+++.++... ++++...+..++.. +.
T Consensus 62 ~G~S~~~~~~~~~~~~~~a~dl~~~i~~l~----~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~ 136 (582)
T PRK05855 62 AGRSSAPKRTAAYTLARLADDFAAVIDAVS----P-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVG 136 (582)
T ss_pred CCCCCCCCcccccCHHHHHHHHHHHHHHhC----C-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHH
Confidence 88875432 224566777777777652 1 23599999999999888776652 23344333333211 00
Q ss_pred -----CC---CCCCC--------c----------c---------ccchhhh------------------------cHHHH
Q 002194 797 -----TL---TPFGF--------Q----------N---------EDRTLWE------------------------ATSTY 817 (954)
Q Consensus 797 -----~~---~~~~~--------~----------~---------~~~~~~~------------------------~~~~~ 817 (954)
.. .+..+ . . .....+. ....+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (582)
T PRK05855 137 FWLRSGLRRPTPRRLARALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLY 216 (582)
T ss_pred HHHhhcccccchhhhhHHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHH
Confidence 00 00000 0 0 0000000 00000
Q ss_pred Hh----cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHH
Q 002194 818 VE----MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (954)
Q Consensus 818 ~~----~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~f 893 (954)
.. ........++++|+|+++|++|..+| ......+.+.+. ..++++++ +||... .+....+.+.|.+|
T Consensus 217 ~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~--~~~~~~~~~~~~----~~~~~~~~-~gH~~~-~e~p~~~~~~i~~f 288 (582)
T PRK05855 217 RANMIRSLSRPRERYTDVPVQLIVPTGDPYVR--PALYDDLSRWVP----RLWRREIK-AGHWLP-MSHPQVLAAAVAEF 288 (582)
T ss_pred HhhhhhhhccCccCCccCceEEEEeCCCcccC--HHHhccccccCC----cceEEEcc-CCCcch-hhChhHHHHHHHHH
Confidence 00 00001133478999999999999998 777766654432 24666776 589875 56677788889999
Q ss_pred HHHh
Q 002194 894 LQKY 897 (954)
Q Consensus 894 l~~~ 897 (954)
+.+.
T Consensus 289 l~~~ 292 (582)
T PRK05855 289 VDAV 292 (582)
T ss_pred HHhc
Confidence 9874
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-07 Score=104.86 Aligned_cols=267 Identities=15% Similarity=0.190 Sum_probs=148.1
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCC-
Q 002194 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP- 186 (954)
Q Consensus 108 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~- 186 (954)
....+.+++||++++|..+... . ... ..|..+.+..+. +....+...+
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~--------------------~---~~~------g~v~~~~i~~~~--g~L~~~~~~~~ 84 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEG--------------------S---GDS------GGVSSYRIDPDT--GTLTLLNSVPS 84 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETT--------------------S---STT------TEEEEEEEETTT--TEEEEEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEcc--------------------c---cCC------CCEEEEEECCCc--ceeEEeeeecc
Confidence 3456788999999888766552 0 000 255666665441 2333332222
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC-Cceeec---ccC----CC--ccccccccceeEecCCe
Q 002194 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPL---FQS----PD--IYLNAIFDNFVWVNNST 256 (954)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~-g~~~~l---t~~----~~--~~~~~~~~~~~wspDG~ 256 (954)
.+....+++.+|||++|+.+.. . ...|.+++++. |..... ... +. .........+.++|||+
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany------~--~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANY------G--GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEET------T--TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred CCCCcEEEEEecCCCEEEEEEc------c--CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 3345678899999998887653 2 33455545443 443332 111 00 00001134688999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC--ceeE-----c
Q 002194 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--TVKE-----I 328 (954)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G--~~~~-----l 328 (954)
++++.- + +...|+.+++ .+ +... +
T Consensus 157 ~v~v~d-----------------------------------l-------------G~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 157 FVYVPD-----------------------------------L-------------GADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp EEEEEE-----------------------------------T-------------TTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred EEEEEe-----------------------------------c-------------CCCEEEEEEEeCCCceEEEeecccc
Confidence 998760 0 3445777777 32 2322 2
Q ss_pred CCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc--CceEEEeccCCCcccCCccccccccCccceee
Q 002194 329 GPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINW 406 (954)
Q Consensus 329 ~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~w 406 (954)
..+.+.+.+.|+|||+++++.... .+.|.+++.+ .+..+.+...... |..+.+. .....+++
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~------------s~~v~v~~~~~~~g~~~~~~~~~~~---~~~~~~~-~~~~~i~i 252 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNEL------------SNTVSVFDYDPSDGSLTEIQTISTL---PEGFTGE-NAPAEIAI 252 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETT------------TTEEEEEEEETTTTEEEEEEEEESC---ETTSCSS-SSEEEEEE
T ss_pred ccCCCCcEEEEcCCcCEEEEecCC------------CCcEEEEeecccCCceeEEEEeeec---ccccccc-CCceeEEE
Confidence 333667889999999998887633 3377788777 4544443322111 1000011 13456899
Q ss_pred ccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEee--c-ccccCceeeccCCceEEEEEeccccceEE
Q 002194 407 RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--L-DLRYGGISWCDDSLALVYESWYKTRRTRT 483 (954)
Q Consensus 407 spDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~--~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (954)
||||+.+++. ++ ..+.|.++++++ .++..+.+.. . ......++++|||++|+.+....+ ...+
T Consensus 253 spdg~~lyvs-nr-----------~~~sI~vf~~d~-~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~-~v~v 318 (345)
T PF10282_consen 253 SPDGRFLYVS-NR-----------GSNSISVFDLDP-ATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN-TVSV 318 (345)
T ss_dssp -TTSSEEEEE-EC-----------TTTEEEEEEECT-TTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT-EEEE
T ss_pred ecCCCEEEEE-ec-----------cCCEEEEEEEec-CCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC-eEEE
Confidence 9999965554 22 245677777622 3345555422 1 223577899999999988754443 4778
Q ss_pred EEEcCCCC
Q 002194 484 WVISPGSK 491 (954)
Q Consensus 484 ~~~d~~~~ 491 (954)
|.+|.++|
T Consensus 319 f~~d~~tG 326 (345)
T PF10282_consen 319 FDIDPDTG 326 (345)
T ss_dssp EEEETTTT
T ss_pred EEEeCCCC
Confidence 88887776
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.9e-09 Score=113.05 Aligned_cols=188 Identities=16% Similarity=0.118 Sum_probs=101.9
Q ss_pred CCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCC-----Ccc---c--------
Q 002194 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG-----DEE---A-------- 731 (954)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G-----~~~---~-------- 731 (954)
+++|+||+.||-. ++...+..++..||++||+|++++.++..+.. ... .
T Consensus 98 ~~~PvvIFSHGlg---------------g~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~ 162 (379)
T PF03403_consen 98 GKFPVVIFSHGLG---------------GSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYL 162 (379)
T ss_dssp S-EEEEEEE--TT-----------------TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT-------
T ss_pred CCCCEEEEeCCCC---------------cchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCcccccccccccc
Confidence 3499999999942 22333446788999999999998877654310 000 0
Q ss_pred ------------ch------hhHHHHHHHHHHHHHHHHHc--------------------CCCCCCcEEEEeeChHHHHH
Q 002194 732 ------------ND------RFVEQLVACAEAAVEEVVRR--------------------GVAHPSKIAVGGHSYGAFMT 773 (954)
Q Consensus 732 ------------~~------~~~~~~~~D~~~av~~l~~~--------------------~~~d~~ri~l~G~S~GG~~a 773 (954)
.. .....-..|+..+++.|.+. +.+|.++|+++|||+||..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa 242 (379)
T PF03403_consen 163 EEEWIPLRDFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATA 242 (379)
T ss_dssp --EEEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHH
T ss_pred ccceeccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHH
Confidence 00 01112257777888877641 34678899999999999999
Q ss_pred HHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHH
Q 002194 774 ANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDR 853 (954)
Q Consensus 774 ~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~ 853 (954)
+.++.+. .+|+|+|+..|.. ++-.. ....+++.|+|+|+.+. ..- ..+...
T Consensus 243 ~~~l~~d-~r~~~~I~LD~W~--------~Pl~~----------------~~~~~i~~P~L~InSe~-f~~---~~~~~~ 293 (379)
T PF03403_consen 243 LQALRQD-TRFKAGILLDPWM--------FPLGD----------------EIYSKIPQPLLFINSES-FQW---WENIFR 293 (379)
T ss_dssp HHHHHH--TT--EEEEES-----------TTS-G----------------GGGGG--S-EEEEEETT-T-----HHHHHH
T ss_pred HHHHhhc-cCcceEEEeCCcc--------cCCCc----------------ccccCCCCCEEEEECcc-cCC---hhhHHH
Confidence 9999888 7899999988742 11000 00134678999999884 321 233333
Q ss_pred HHHHHHhCCCcEEEEEeCCCCCcCC------Cc------------ccH----HHHHHHHHHHHHHhccc
Q 002194 854 FFNALKGHGALCRLVILPFESHGYA------AR------------ESI----MHVLWETDRWLQKYCVS 900 (954)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~~~------~~------------~~~----~~~~~~i~~fl~~~l~~ 900 (954)
+.+ +...+....++.+.|..|.-. .+ .+. +...+.+++||++||+.
T Consensus 294 ~~~-~~~~~~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~~ 361 (379)
T PF03403_consen 294 MKK-VISNNKESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLGL 361 (379)
T ss_dssp HHT-T--TTS-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHH-HhccCCCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcCC
Confidence 333 223445678889999999521 00 122 23345689999999864
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.4e-08 Score=108.85 Aligned_cols=304 Identities=15% Similarity=0.077 Sum_probs=146.7
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002194 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (954)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~ 192 (954)
.+.|||||+++.....+ +.|.++|+.. .+ .+.....+....
T Consensus 41 ~~~~s~Dgr~~yv~~rd---------------------------------g~vsviD~~~----~~--~v~~i~~G~~~~ 81 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRD---------------------------------GTVSVIDLAT----GK--VVATIKVGGNPR 81 (369)
T ss_dssp EEE-TT-SSEEEEEETT---------------------------------SEEEEEETTS----SS--EEEEEE-SSEEE
T ss_pred EEEecCCCCEEEEEcCC---------------------------------CeEEEEECCc----cc--EEEEEecCCCcc
Confidence 35789999997776543 4688989854 22 232233455678
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc---ccccccceeEecCCeEEEEEecCCCCCC
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY---LNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~---~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
..++||||++|+.... ...++-++|.++.+..+........ ....+..+.-+|+...+++..
T Consensus 82 ~i~~s~DG~~~~v~n~--------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l------- 146 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANY--------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL------- 146 (369)
T ss_dssp EEEE--TTTEEEEEEE--------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE-------
T ss_pred eEEEcCCCCEEEEEec--------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE-------
Confidence 8999999999877653 2568999999887765543322110 000022344456665444431
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc---eeEcCCCccccccccCCCCcE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPPAVYTSLDPSPDEKY 345 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~---~~~l~~~~~~~~~~~SpDGk~ 345 (954)
....+||.+|. +.. .+.+.......+..|+||||+
T Consensus 147 -----------------------------------------kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 147 -----------------------------------------KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp -----------------------------------------TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred -----------------------------------------ccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence 03457999997 442 223323344567889999999
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceEEEeccC-CCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDL-PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~-~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
++...+..+ .+-++|..+++...+... ......+.....+ -...+.|.-.+.........
T Consensus 186 ~~va~~~sn------------~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ph--p~~g~vw~~~~~~~~~~~~i----- 246 (369)
T PF02239_consen 186 FLVAANGSN------------KIAVIDTKTGKLVALIDTGKKPHPGPGANFPH--PGFGPVWATSGLGYFAIPLI----- 246 (369)
T ss_dssp EEEEEGGGT------------EEEEEETTTTEEEEEEE-SSSBEETTEEEEEE--TTTEEEEEEEBSSSSEEEEE-----
T ss_pred eeecccccc------------eeEEEeeccceEEEEeeccccccccccccccC--CCcceEEeeccccceecccc-----
Confidence 988764432 777888886655443221 1111111100000 01123454333322221000
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEE-EecCCC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI-LFDRSS 503 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~-l~~~~~ 503 (954)
+.+.+.+++. .+-...+.+... +..-.+.-+||+++|+....-+.....|.++|.++- +... +.....
T Consensus 247 ------g~~~v~v~d~--~~wkvv~~I~~~-G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--~~~~~i~~~~~ 315 (369)
T PF02239_consen 247 ------GTDPVSVHDD--YAWKVVKTIPTQ-GGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--KVVKTITPGPG 315 (369)
T ss_dssp ------E--TTT-STT--TBTSEEEEEE-S-SSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--EEEE-HHHHHT
T ss_pred ------cCCccccchh--hcCeEEEEEECC-CCcceeecCCCCccEEeeccCCCCCceEEEEECcCc--ceeEEEeccCC
Confidence 0111112221 111122333322 222557779999999887322222467999998874 2111 111111
Q ss_pred CCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEE
Q 002194 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566 (954)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 566 (954)
..+.. +.|++||+.+++..... ...|.++|.+|.+...
T Consensus 316 ~~~~h------~ef~~dG~~v~vS~~~~-------------------~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 316 KRVVH------MEFNPDGKEVWVSVWDG-------------------NGAIVVYDAKTLKEKK 353 (369)
T ss_dssp --EEE------EEE-TTSSEEEEEEE---------------------TTEEEEEETTTTEEEE
T ss_pred CcEec------cEECCCCCEEEEEEecC-------------------CCEEEEEECCCcEEEE
Confidence 00111 78999999998887432 1159999998876543
|
... |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.5e-08 Score=110.34 Aligned_cols=270 Identities=17% Similarity=0.075 Sum_probs=151.9
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCC
Q 002194 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (954)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (954)
....+||||++|||..+.+ +++...|+++|+++|+...-. ..... ...+.|++||+.|+|+.........
T Consensus 127 ~~~~~Spdg~~la~~~s~~----G~e~~~l~v~Dl~tg~~l~d~-i~~~~----~~~~~W~~d~~~~~y~~~~~~~~~~- 196 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDG----GSEWYTLRVFDLETGKFLPDG-IENPK----FSSVSWSDDGKGFFYTRFDEDQRTS- 196 (414)
T ss_dssp EEEEETTTSSEEEEEEEET----TSSEEEEEEEETTTTEEEEEE-EEEEE----SEEEEECTTSSEEEEEECSTTTSS--
T ss_pred eeeeECCCCCEEEEEecCC----CCceEEEEEEECCCCcCcCCc-ccccc----cceEEEeCCCCEEEEEEeCcccccc-
Confidence 3578999999999998654 778899999999998553211 01110 2248999999999998322111100
Q ss_pred CCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce--eEcCCC---cc-ccccccCCCCc
Q 002194 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV--KEIGPP---AV-YTSLDPSPDEK 344 (954)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~--~~l~~~---~~-~~~~~~SpDGk 344 (954)
.-....+||+..+ ++.. ..|... .. ..++..|+||+
T Consensus 197 -------------------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~ 239 (414)
T PF02897_consen 197 -------------------------------------DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGR 239 (414)
T ss_dssp -------------------------------------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSS
T ss_pred -------------------------------------cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCccc
Confidence 0002346888888 5532 344433 22 45788999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCc-----eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-----FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-----~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
+|++.+..... ...+++.+++.. ..+.+..... +.... ....|..+++.++.
T Consensus 240 ~l~i~~~~~~~---------~s~v~~~d~~~~~~~~~~~~~l~~~~~-------------~~~~~-v~~~~~~~yi~Tn~ 296 (414)
T PF02897_consen 240 YLFISSSSGTS---------ESEVYLLDLDDGGSPDAKPKLLSPRED-------------GVEYY-VDHHGDRLYILTND 296 (414)
T ss_dssp EEEEEEESSSS---------EEEEEEEECCCTTTSS-SEEEEEESSS-------------S-EEE-EEEETTEEEEEE-T
T ss_pred EEEEEEEcccc---------CCeEEEEeccccCCCcCCcEEEeCCCC-------------ceEEE-EEccCCEEEEeeCC
Confidence 99988765432 137899998864 4455544211 11111 11124445444331
Q ss_pred ccCCCccccccCCCeEEEEecCCCCCCC---ce-EEeecccccCceeeccCCceEEEEEeccccceEEEEEcCC-CCCCC
Q 002194 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEG---PE-ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG-SKDVA 494 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~---~~-~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~-~~~~~ 494 (954)
+ ..+..|+.+++ +... .. .+........--.++..+.+|+.....++ ..+|+++++. +. .
T Consensus 297 --~-------a~~~~l~~~~l---~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~-~~~l~v~~~~~~~--~ 361 (414)
T PF02897_consen 297 --D-------APNGRLVAVDL---ADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG-SSRLRVYDLDDGK--E 361 (414)
T ss_dssp --T--------TT-EEEEEET---TSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT-EEEEEEEETT-TE--E
T ss_pred --C-------CCCcEEEEecc---cccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC-ccEEEEEECCCCc--E
Confidence 1 33568888886 3222 22 44444433333345566778888777665 4889999998 42 2
Q ss_pred cEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEec
Q 002194 495 PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (954)
Q Consensus 495 ~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 569 (954)
...+.-.....+.+ +...+++..+.|... +... .+.+|.+|+++++.+.+..
T Consensus 362 ~~~~~~p~~g~v~~------~~~~~~~~~~~~~~s--------------s~~~---P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 362 SREIPLPEAGSVSG------VSGDFDSDELRFSYS--------------SFTT---PPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EEEEESSSSSEEEE------EES-TT-SEEEEEEE--------------ETTE---EEEEEEEETTTTCEEEEEE
T ss_pred EeeecCCcceEEec------cCCCCCCCEEEEEEe--------------CCCC---CCEEEEEECCCCCEEEEEe
Confidence 23332222222111 334556666666653 3332 3459999999999887753
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-06 Score=93.52 Aligned_cols=291 Identities=13% Similarity=0.084 Sum_probs=145.9
Q ss_pred ceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhh
Q 002194 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (954)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (954)
..+|+++|.++++.......... ... ..||||+.||.+... +.|.
T Consensus 26 ~~~v~ViD~~~~~v~g~i~~G~~-----P~~-~~spDg~~lyva~~~--------------------------~~R~--- 70 (352)
T TIGR02658 26 TTQVYTIDGEAGRVLGMTDGGFL-----PNP-VVASDGSFFAHASTV--------------------------YSRI--- 70 (352)
T ss_pred CceEEEEECCCCEEEEEEEccCC-----Cce-eECCCCCEEEEEecc--------------------------cccc---
Confidence 38999999998776544433332 223 499999999987210 0010
Q ss_pred hccCccccccccccccceEEEEEe-CCc-eeEcCCC--------ccccccccCCCCcEEEEEeecCCcccccccCCCCcc
Q 002194 298 LLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP--------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQ 367 (954)
Q Consensus 298 ~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~--------~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~ 367 (954)
.... ....|-++|+ +++ ...|.-+ .....+++|||||+|++..... ...
T Consensus 71 --~~G~--------~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p-----------~~~ 129 (352)
T TIGR02658 71 --ARGK--------RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP-----------SPA 129 (352)
T ss_pred --ccCC--------CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC-----------CCE
Confidence 0000 2234777888 664 3344432 1223688999999998765331 237
Q ss_pred eEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCC
Q 002194 368 VGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE 446 (954)
Q Consensus 368 l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 446 (954)
+.++|+..+++ .++.........+. .....+....||+.+.+..+. .+....-.
T Consensus 130 V~VvD~~~~kvv~ei~vp~~~~vy~t------~e~~~~~~~~Dg~~~~v~~d~------------~g~~~~~~------- 184 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPDCYHIFPT------ANDTFFMHCRDGSLAKVGYGT------------KGNPKIKP------- 184 (352)
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEe------cCCccEEEeecCceEEEEecC------------CCceEEee-------
Confidence 88999986654 33433111100010 111223444555543332111 11111100
Q ss_pred CceEEeec--ccccCceeecc-CCceEEEEEeccccceEEEEEcCCCCCCCcEE---E-ecCCCCCccCCCCC-CCeeec
Q 002194 447 GPEILHKL--DLRYGGISWCD-DSLALVYESWYKTRRTRTWVISPGSKDVAPRI---L-FDRSSEDVYSDPGS-PMMRRT 518 (954)
Q Consensus 447 ~~~~l~~~--~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~---l-~~~~~~~~~~~~~~-~~~~~s 518 (954)
..+... +.-...+.|++ ||++++.+ .. ..++.+|+.+....... + +.....+- -.++. -.++++
T Consensus 185 --~~vf~~~~~~v~~rP~~~~~dg~~~~vs-~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~-wrP~g~q~ia~~ 256 (352)
T TIGR02658 185 --TEVFHPEDEYLINHPAYSNKSGRLVWPT-YT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADG-WRPGGWQQVAYH 256 (352)
T ss_pred --eeeecCCccccccCCceEcCCCcEEEEe-cC----CeEEEEecCCCcceecceeeeccccccccc-cCCCcceeEEEc
Confidence 111111 11123346677 77665554 33 46999997654211111 1 11110000 01121 116778
Q ss_pred cCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEE
Q 002194 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKI 598 (954)
Q Consensus 519 pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 598 (954)
|||+.++....+. ...+......+++++|.++++...-...... .. ...+|+|++.+
T Consensus 257 ~dg~~lyV~~~~~-----------~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~-----~~-------~iavS~Dgkp~ 313 (352)
T TIGR02658 257 RARDRIYLLADQR-----------AKWTHKTASRFLFVVDAKTGKRLRKIELGHE-----ID-------SINVSQDAKPL 313 (352)
T ss_pred CCCCEEEEEecCC-----------ccccccCCCCEEEEEECCCCeEEEEEeCCCc-----ee-------eEEECCCCCeE
Confidence 8888776644221 0011112234799999999987655443322 11 24689999945
Q ss_pred EEEEecCCCCceEEEEECCCCcee
Q 002194 599 LTSKESKTENTQYYIQSWPDKKSC 622 (954)
Q Consensus 599 ~~~~~s~~~p~~l~~~~~~~g~~~ 622 (954)
+|..... ...+.++|..+++..
T Consensus 314 lyvtn~~--s~~VsViD~~t~k~i 335 (352)
T TIGR02658 314 LYALSTG--DKTLYIFDAETGKEL 335 (352)
T ss_pred EEEeCCC--CCcEEEEECcCCeEE
Confidence 5444432 345889998887543
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-08 Score=131.42 Aligned_cols=199 Identities=15% Similarity=0.215 Sum_probs=120.4
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch----------hhHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND----------RFVEQL 739 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~----------~~~~~~ 739 (954)
.|.||++||..... ..| ......| ..+|.|+. .+..|+|.+.... ......
T Consensus 1371 ~~~vVllHG~~~s~-----------~~w----~~~~~~L-~~~~rVi~---~Dl~G~G~S~~~~~~~~~~~~~~~si~~~ 1431 (1655)
T PLN02980 1371 GSVVLFLHGFLGTG-----------EDW----IPIMKAI-SGSARCIS---IDLPGHGGSKIQNHAKETQTEPTLSVELV 1431 (1655)
T ss_pred CCeEEEECCCCCCH-----------HHH----HHHHHHH-hCCCEEEE---EcCCCCCCCCCccccccccccccCCHHHH
Confidence 57899999963211 111 1123333 45799999 5666777764321 112333
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC------C------------
Q 002194 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP------F------------ 801 (954)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~------~------------ 801 (954)
.+++.+.++.+ +.+++.++||||||.+++.++.++|++++++|++++........ .
T Consensus 1432 a~~l~~ll~~l------~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~ 1505 (1655)
T PLN02980 1432 ADLLYKLIEHI------TPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDH 1505 (1655)
T ss_pred HHHHHHHHHHh------CCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhh
Confidence 34443333332 34689999999999999999999999999999887532110000 0
Q ss_pred CCc---c--ccchhhhc-------------------H----HHHHhc------CcccccCCCCCCEEEEEeCCCCCCCCc
Q 002194 802 GFQ---N--EDRTLWEA-------------------T----STYVEM------SPFMSANKLKKPILLVHGEEDNNSGTL 847 (954)
Q Consensus 802 ~~~---~--~~~~~~~~-------------------~----~~~~~~------sp~~~~~~~~~P~Lii~G~~D~~v~~~ 847 (954)
... . .....|.. . ..+... +....+.++++|+|+++|++|..++
T Consensus 1506 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-- 1583 (1655)
T PLN02980 1506 GLEIFLENWYSGELWKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-- 1583 (1655)
T ss_pred hHHHHHHHhccHHHhhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH--
Confidence 000 0 00000000 0 000000 0112356788999999999998753
Q ss_pred hHHHHHHHHHHHhCC--------CcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 848 TMQSDRFFNALKGHG--------ALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 848 ~~~~~~~~~~l~~~g--------~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
..+.++.+.+.... ..++++++|++||... .++...+.+.|.+||.+.
T Consensus 1584 -~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~-lE~Pe~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1584 -QIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVH-LENPLPVIRALRKFLTRL 1639 (1655)
T ss_pred -HHHHHHHHHccccccccccccccceEEEEECCCCCchH-HHCHHHHHHHHHHHHHhc
Confidence 56677776665420 1268999999999874 677788899999999874
|
|
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=103.71 Aligned_cols=221 Identities=19% Similarity=0.198 Sum_probs=127.0
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC----cE
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG----FA 714 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G----~~ 714 (954)
.+.+.+.+.-..+....+|+|++|.+.. ++|++++.||-.+. .+... ......+...| -+
T Consensus 69 ~~~~~~~~~l~~~~~~vv~lppgy~~~~--k~pvl~~~DG~~~~-------------~~g~i-~~~~dsli~~g~i~pai 132 (299)
T COG2382 69 VEEILYSSELLSERRRVVYLPPGYNPLE--KYPVLYLQDGQDWF-------------RSGRI-PRILDSLIAAGEIPPAI 132 (299)
T ss_pred hhhhhhhhhhccceeEEEEeCCCCCccc--cccEEEEeccHHHH-------------hcCCh-HHHHHHHHHcCCCCCce
Confidence 3444554444456778889999987654 49999999983211 01111 12344455544 55
Q ss_pred EEEcCCCCCCCCCCccc-chhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEec
Q 002194 715 ILGGPTTPIIGEGDEEA-NDRFVEQLVACAEAAVEEVVRRG--VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (954)
Q Consensus 715 V~~~~~~~~~G~G~~~~-~~~~~~~~~~D~~~av~~l~~~~--~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (954)
++..++.+-.-+..+.. +..+...+.. +.+=++.+.. .-+.++-+|+|.|+||.++++++.++|++|..+++.+
T Consensus 133 ~vgid~~d~~~R~~~~~~n~~~~~~L~~---eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~S 209 (299)
T COG2382 133 LVGIDYIDVKKRREELHCNEAYWRFLAQ---ELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQS 209 (299)
T ss_pred EEecCCCCHHHHHHHhcccHHHHHHHHH---HhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccC
Confidence 55544432211111111 1222222232 3334444442 2456789999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC
Q 002194 792 GAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP 871 (954)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~ 871 (954)
|.+++...... .....++ ..+-...+.....-++...++.+.+ ....+++++.|+..|.+..+..|+
T Consensus 210 ps~~~~~~~~~---~~~~~~~------~l~~~~a~~~~~~~~l~~g~~~~~~----~~pNr~L~~~L~~~g~~~~yre~~ 276 (299)
T COG2382 210 GSFWWTPLDTQ---PQGEVAE------SLKILHAIGTDERIVLTTGGEEGDF----LRPNRALAAQLEKKGIPYYYREYP 276 (299)
T ss_pred CccccCccccc---cccchhh------hhhhhhccCccceEEeecCCccccc----cchhHHHHHHHHhcCCcceeeecC
Confidence 97664332110 0111111 1111222233334233333444444 455788999999999999999999
Q ss_pred CCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 872 FESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 872 ~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
| ||.+.. +...+.++|...+
T Consensus 277 G-gHdw~~------Wr~~l~~~L~~l~ 296 (299)
T COG2382 277 G-GHDWAW------WRPALAEGLQLLL 296 (299)
T ss_pred C-CCchhH------hHHHHHHHHHHhh
Confidence 9 998742 2334555555443
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.2e-07 Score=90.88 Aligned_cols=290 Identities=14% Similarity=0.103 Sum_probs=166.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+.+++++|+-.++|.-..+ .--+||++.+ | ...-.++++. .
T Consensus 66 svFavsl~P~~~l~aTGGgD---------------------------------D~AflW~~~~-g--e~~~eltgHK--D 107 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGD---------------------------------DLAFLWDIST-G--EFAGELTGHK--D 107 (399)
T ss_pred ceEEEEeCCCCceEEecCCC---------------------------------ceEEEEEccC-C--cceeEecCCC--C
Confidence 56677888866666655443 3568999864 3 2455666543 4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....||-||..||. ++-...|.++...+|..+.....+... +..+.|.|-+.+|++.
T Consensus 108 SVt~~~FshdgtlLAT---------GdmsG~v~v~~~stg~~~~~~~~e~~d----ieWl~WHp~a~illAG-------- 166 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLAT---------GDMSGKVLVFKVSTGGEQWKLDQEVED----IEWLKWHPRAHILLAG-------- 166 (399)
T ss_pred ceEEEEEccCceEEEe---------cCCCccEEEEEcccCceEEEeecccCc----eEEEEecccccEEEee--------
Confidence 7999999999999987 334556666666666655443322222 6789999999888865
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCC-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~l 346 (954)
+ ....+|.+.+ ++ ..+.+..+ ...+.-.|.||||+|
T Consensus 167 -------------~----------------------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~ 205 (399)
T KOG0296|consen 167 -------------S----------------------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRI 205 (399)
T ss_pred -------------c----------------------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceE
Confidence 1 2245888888 54 44444444 667778899999999
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccc----cCc--cceeeccCCCCceEEEEe
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVR----KGM--RSINWRSDKPSTLYWAET 419 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~----~g~--~~~~wspDg~~i~~~~~~ 419 (954)
+....+ +.|.+|+..++++ ..++........+..++... .+. ..+.+...+..-+.....
T Consensus 206 ~tgy~d-------------gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 206 LTGYDD-------------GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred EEEecC-------------ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecC
Confidence 988743 3899999986643 34442221111111110000 000 001111111111111000
Q ss_pred ---------ccCCCccc-------------cccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEecc
Q 002194 420 ---------QDGGDAKV-------------EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 420 ---------~~~~~~~~-------------~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
.+.....+ -.+-.+.|.+||. .....|.+-.++..+..+.|-+ ..+|+.+.- +
T Consensus 273 ~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~---a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~-~ 347 (399)
T KOG0296|consen 273 GTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL---AASTLRHICEHEDGVTKLKWLN-TDYLLTACA-N 347 (399)
T ss_pred CCCccccccchhhhhhhhhcccccccchhhcccccceEEEEec---ccchhheeccCCCceEEEEEcC-cchheeecc-C
Confidence 00000000 1123457888885 5566676666666688889988 555655432 2
Q ss_pred ccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 478 TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 478 ~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
..|+.+|..+| ..+....++...++. ++.+|+++.++-.+
T Consensus 348 ---g~v~~wDaRtG--~l~~~y~GH~~~Il~------f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 348 ---GKVRQWDARTG--QLKFTYTGHQMGILD------FALSPQKRLVVTVS 387 (399)
T ss_pred ---ceEEeeecccc--ceEEEEecCchheeE------EEEcCCCcEEEEec
Confidence 35777787776 334344444444444 67899998887765
|
|
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-09 Score=100.44 Aligned_cols=173 Identities=20% Similarity=0.197 Sum_probs=111.3
Q ss_pred CCcEEEEcCCCCCCCCCCcccchhh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEE
Q 002194 711 RGFAILGGPTTPIIGEGDEEANDRF--VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (954)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~~~~--~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (954)
.-+.|++ .|-.|||.+-.++.- .....+|...|++.+... +-+++.|+|+|-||..|+.+|+++++.+...|
T Consensus 70 l~~Tiva---wDPpGYG~SrPP~Rkf~~~ff~~Da~~avdLM~aL---k~~~fsvlGWSdGgiTalivAak~~e~v~rmi 143 (277)
T KOG2984|consen 70 LQVTIVA---WDPPGYGTSRPPERKFEVQFFMKDAEYAVDLMEAL---KLEPFSVLGWSDGGITALIVAAKGKEKVNRMI 143 (277)
T ss_pred CceEEEE---ECCCCCCCCCCCcccchHHHHHHhHHHHHHHHHHh---CCCCeeEeeecCCCeEEEEeeccChhhhhhhe
Confidence 3488888 666789988665433 234578888999888775 44789999999999999999999998887777
Q ss_pred EeccCCCCCCC---CC-------CCccccch-------------hhhc----HHHHHhcC---c-ccccCCCCCCEEEEE
Q 002194 789 ARSGAYNRTLT---PF-------GFQNEDRT-------------LWEA----TSTYVEMS---P-FMSANKLKKPILLVH 837 (954)
Q Consensus 789 ~~~~~~~~~~~---~~-------~~~~~~~~-------------~~~~----~~~~~~~s---p-~~~~~~~~~P~Lii~ 837 (954)
...+..-.... .+ .+....+. .|.. ...+...- - -..+.++++|+||+|
T Consensus 144 iwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~h 223 (277)
T KOG2984|consen 144 IWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMH 223 (277)
T ss_pred eecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEee
Confidence 66543110000 00 00000111 1211 01111100 0 123567899999999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
|+.|+.|+ -.+.- +...++.. .++.++|..+|.+. ....+++...+++||+.
T Consensus 224 G~kDp~~~--~~hv~-fi~~~~~~---a~~~~~peGkHn~h-Lrya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 224 GGKDPFCG--DPHVC-FIPVLKSL---AKVEIHPEGKHNFH-LRYAKEFNKLVLDFLKS 275 (277)
T ss_pred CCcCCCCC--CCCcc-chhhhccc---ceEEEccCCCccee-eechHHHHHHHHHHHhc
Confidence 99999997 44433 33333333 58889999999985 44556777888888874
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.8e-08 Score=103.04 Aligned_cols=249 Identities=12% Similarity=0.036 Sum_probs=140.2
Q ss_pred CCCCCCcceeeEeceEEEEccCCC-CCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCC
Q 002194 151 GKCNTRSRMSFYTGIGIHQLFPDG-KLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG 229 (954)
Q Consensus 151 ~~~~~~~~~~~~~~l~l~~~~~~g-~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g 229 (954)
+.+.....++.+..+..||..+=. +...-++|.. .++..+...+|||.|.+|+.++ |..+.-++|-+|-
T Consensus 177 p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P-~E~h~i~sl~ys~Tg~~iLvvs---------g~aqakl~DRdG~ 246 (641)
T KOG0772|consen 177 PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP-CETHQINSLQYSVTGDQILVVS---------GSAQAKLLDRDGF 246 (641)
T ss_pred CCCceeeeccccceEEEEecccccccchhhhccCc-ccccccceeeecCCCCeEEEEe---------cCcceeEEccCCc
Confidence 333333333334678899984211 1112234421 1333788999999999999976 3667777777775
Q ss_pred ceeecccCCC--------ccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccC
Q 002194 230 KARPLFQSPD--------IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKD 301 (954)
Q Consensus 230 ~~~~lt~~~~--------~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~ 301 (954)
+......+.. .+..+.+....|.|+.+-.|.+.. .
T Consensus 247 ~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s--------------------~----------------- 289 (641)
T KOG0772|consen 247 EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS--------------------Y----------------- 289 (641)
T ss_pred eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec--------------------C-----------------
Confidence 5443322211 111223456679999987776621 1
Q ss_pred ccccccccccccceEEEEEeCCceeEc----CCC---ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc
Q 002194 302 EYDEDLFDYYATTQLVLVSLDGTVKEI----GPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (954)
Q Consensus 302 ~~d~~~~~~~~~~~l~~~~~~G~~~~l----~~~---~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~ 374 (954)
| ++-+||-++-.....++ ..+ -.++..+|+|||++||..-.+ +.|.+|+..
T Consensus 290 --D-------gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D-------------GSIQ~W~~~ 347 (641)
T KOG0772|consen 290 --D-------GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD-------------GSIQIWDKG 347 (641)
T ss_pred --C-------CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccC-------------CceeeeecC
Confidence 1 34445555542221111 111 345788999999998876633 378899975
Q ss_pred CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceE-Eee
Q 002194 375 GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-LHK 453 (954)
Q Consensus 375 g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~-l~~ 453 (954)
+..+++......+.. ...++..++||+||+.|+-- +..+.+-+|++ .+-+++-. .+.
T Consensus 348 ~~~v~p~~~vk~AH~-------~g~~Itsi~FS~dg~~LlSR-------------g~D~tLKvWDL--rq~kkpL~~~tg 405 (641)
T KOG0772|consen 348 SRTVRPVMKVKDAHL-------PGQDITSISFSYDGNYLLSR-------------GFDDTLKVWDL--RQFKKPLNVRTG 405 (641)
T ss_pred CcccccceEeeeccC-------CCCceeEEEeccccchhhhc-------------cCCCceeeeec--cccccchhhhcC
Confidence 333222211110000 00245789999999987654 44667888886 22222211 122
Q ss_pred c--ccccCceeeccCCceEEEEEeccc--cceEEEEEcCCC
Q 002194 454 L--DLRYGGISWCDDSLALVYESWYKT--RRTRTWVISPGS 490 (954)
Q Consensus 454 ~--~~~~~~~~~spDg~~l~~~~~~~~--~~~~l~~~d~~~ 490 (954)
. ...-....||||.+.|+......+ ....|+.+|..+
T Consensus 406 L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 406 LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 1 223356899999998887654221 234688888766
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.2e-08 Score=104.50 Aligned_cols=242 Identities=9% Similarity=0.022 Sum_probs=148.7
Q ss_pred CCCCceecC-CCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCC
Q 002194 110 PLPALSFSP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (954)
Q Consensus 110 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~ 188 (954)
.++++.|.| .|..|+....+ ..|+||++-+++ +-.+...+ +.
T Consensus 216 gvsai~~fp~~~hLlLS~gmD---------------------------------~~vklW~vy~~~--~~lrtf~g--H~ 258 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMD---------------------------------GLVKLWNVYDDR--RCLRTFKG--HR 258 (503)
T ss_pred ccchhhhccceeeEEEecCCC---------------------------------ceEEEEEEecCc--ceehhhhc--ch
Confidence 366788888 67666666654 579999996544 22222222 22
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+..+.||.+|..++.++- ...|-++|+++|+...-...... ..-+.+.||+..++++.-
T Consensus 259 k~Vrd~~~s~~g~~fLS~sf---------D~~lKlwDtETG~~~~~f~~~~~-----~~cvkf~pd~~n~fl~G~----- 319 (503)
T KOG0282|consen 259 KPVRDASFNNCGTSFLSASF---------DRFLKLWDTETGQVLSRFHLDKV-----PTCVKFHPDNQNIFLVGG----- 319 (503)
T ss_pred hhhhhhhccccCCeeeeeec---------ceeeeeeccccceEEEEEecCCC-----ceeeecCCCCCcEEEEec-----
Confidence 47899999999999888653 56788889999987655443332 446778899966666510
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCC-C-ccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-P-AVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~-~-~~~~~~~~SpDGk~ 345 (954)
....|..+|. +|++.+-.. . +.+..+.|-++|++
T Consensus 320 -------------------------------------------sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 320 -------------------------------------------SDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred -------------------------------------------CCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCce
Confidence 2245778888 887554443 3 77888999999999
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
.+.++.+. .+.+|+........+...+.. -....+..+|.++.++.-
T Consensus 357 FissSDdk-------------s~riWe~~~~v~ik~i~~~~~-----------hsmP~~~~~P~~~~~~aQ--------- 403 (503)
T KOG0282|consen 357 FISSSDDK-------------SVRIWENRIPVPIKNIADPEM-----------HTMPCLTLHPNGKWFAAQ--------- 403 (503)
T ss_pred EeeeccCc-------------cEEEEEcCCCccchhhcchhh-----------ccCcceecCCCCCeehhh---------
Confidence 99988553 778888764322111111111 122356778888743322
Q ss_pred cccccCCCeEEEEecCCCC-CCCceEEeec--ccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 426 KVEVTPRDIIYTQQAEPVQ-GEGPEILHKL--DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~-g~~~~~l~~~--~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+-.+.++++.+.+.- -...++...+ .+..-.+.|||||++|++...+ +.++.+|..+.
T Consensus 404 ----s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd----G~v~~wdwkt~ 464 (503)
T KOG0282|consen 404 ----SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD----GKVNFWDWKTT 464 (503)
T ss_pred ----ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC----ccEEEeechhh
Confidence 334456555531111 1111122222 2223358999999999987433 45777777663
|
|
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=104.91 Aligned_cols=187 Identities=16% Similarity=0.146 Sum_probs=75.8
Q ss_pred cHHHHHHHHCCcEEEEcCCCC-CCCCCCcccchhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEeeChHHHHHHHHHH
Q 002194 702 STSVLLWLARGFAILGGPTTP-IIGEGDEEANDRFVEQLVACAEAAVEEVVRRG--VAHPSKIAVGGHSYGAFMTANLLA 778 (954)
Q Consensus 702 ~~~~~~la~~G~~V~~~~~~~-~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~--~~d~~ri~l~G~S~GG~~a~~~a~ 778 (954)
...+..|...||.|+...... +.|+|.+ .....++|+..+|+||+... .-..++|+|+|||-|..-++.++.
T Consensus 53 ~~La~aL~~~~wsl~q~~LsSSy~G~G~~-----SL~~D~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~ 127 (303)
T PF08538_consen 53 PDLAEALEETGWSLFQVQLSSSYSGWGTS-----SLDRDVEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLS 127 (303)
T ss_dssp HHHHHHHT-TT-EEEEE--GGGBTTS-S-------HHHHHHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHH
T ss_pred HHHHHHhccCCeEEEEEEecCccCCcCcc-----hhhhHHHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHh
Confidence 345555656799999854433 4566654 35678999999999999872 235679999999999999999987
Q ss_pred hCC-----CcccEEEEeccCCCCCCCCCCCcc-cc-c-------------------------hhh-hcH---HHHHh-cC
Q 002194 779 HAP-----HLFCCGIARSGAYNRTLTPFGFQN-ED-R-------------------------TLW-EAT---STYVE-MS 821 (954)
Q Consensus 779 ~~p-----~~~~a~v~~~~~~~~~~~~~~~~~-~~-~-------------------------~~~-~~~---~~~~~-~s 821 (954)
+.. ..+.++|+.+|++|++........ +. . ..+ ..+ ..|.. .+
T Consensus 128 ~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~lp~~~~~~~~~~~PiTA~Rf~SL~s 207 (303)
T PF08538_consen 128 SPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEILPREFTPLVFYDTPITAYRFLSLAS 207 (303)
T ss_dssp H-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG----GGTTT-SS---HHHHHT-S-
T ss_pred ccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCceeeccccccccCCCcccHHHHHhccC
Confidence 652 569999999999997765443211 00 0 000 000 00000 00
Q ss_pred c----------------ccccCCCCCCEEEEEeCCCCCCCCchH-HHHHHHHHHHhCCC----cEEEEEeCCCCCcCCCc
Q 002194 822 P----------------FMSANKLKKPILLVHGEEDNNSGTLTM-QSDRFFNALKGHGA----LCRLVILPFESHGYAAR 880 (954)
Q Consensus 822 p----------------~~~~~~~~~P~Lii~G~~D~~v~~~~~-~~~~~~~~l~~~g~----~~~~~~~~~~~H~~~~~ 880 (954)
| .....++.+|+|++.+++|+.|| .. +-.++.++++..-. ...--++||++|.+...
T Consensus 208 ~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP--~~vdk~~Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~ 285 (303)
T PF08538_consen 208 PGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVP--PWVDKEALLERWKAATNPKIWSPLSGIIPGASHNVSGP 285 (303)
T ss_dssp SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT-------------------------------------------
T ss_pred CCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceec--cccccccccccccccccccccccccccccccccccccc
Confidence 0 11345677899999999999997 43 34556666665422 12345899999998654
Q ss_pred cc---HHHHHHHHHHHHH
Q 002194 881 ES---IMHVLWETDRWLQ 895 (954)
Q Consensus 881 ~~---~~~~~~~i~~fl~ 895 (954)
.. .+.+.+++..||+
T Consensus 286 ~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 286 SQAEAREWLVERVVKFLK 303 (303)
T ss_dssp ------------------
T ss_pred ccccccccccccccccCC
Confidence 43 2355666666653
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-07 Score=110.52 Aligned_cols=178 Identities=15% Similarity=0.205 Sum_probs=112.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..|+.||||++++|+....+ ...++..+||+++. +++.+++|.... ...+.|+|||+.|+|........
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~-gg~~~~lt~g~~------~t~PsWspDG~~lw~v~dg~~~~- 421 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPL-GGVAVQVLEGHS------LTRPSWSLDADAVWVVVDGNTVV- 421 (591)
T ss_pred CcccceECCCCCEEEEEEeecC-CCCCcceEEEEEeC-CCcceeeecCCC------CCCceECCCCCceEEEecCcceE-
Confidence 6789999999999999986542 23346789999997 556688876543 56899999999999883210000
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCccccccccCCCCcEEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (954)
+ +... .+..+||.+++ .|+.++ ...+.+.++.|||||++|+|
T Consensus 422 -----------------------~-----v~~~--------~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~ 464 (591)
T PRK13616 422 -----------------------R-----VIRD--------PATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAM 464 (591)
T ss_pred -----------------------E-----Eecc--------CCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEE
Confidence 0 0000 03467999998 666655 32367899999999999999
Q ss_pred EeecCCcccccccCCCCcceEE---EeccCceEEEeccCC-CcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGV---WTTDGIFVRELCDLP-LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l---~d~~g~~~~~l~~~~-~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
... +++++ ...++++ ..++... ... +......++.|..|++ |+.. ..
T Consensus 465 i~~--------------g~v~Va~Vvr~~~G~-~~l~~~~~l~~-------~l~~~~~~l~W~~~~~-L~V~--~~---- 515 (591)
T PRK13616 465 IIG--------------GKVYLAVVEQTEDGQ-YALTNPREVGP-------GLGDTAVSLDWRTGDS-LVVG--RS---- 515 (591)
T ss_pred EEC--------------CEEEEEEEEeCCCCc-eeecccEEeec-------ccCCccccceEecCCE-EEEE--ec----
Confidence 872 26666 4444554 4443211 000 0101135688999998 4433 11
Q ss_pred ccccccCCCeEEEEecCCCCCCCceE
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEI 450 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (954)
+....+|.+.+ +|.....
T Consensus 516 -----~~~~~v~~v~v---DG~~~~~ 533 (591)
T PRK13616 516 -----DPEHPVWYVNL---DGSNSDA 533 (591)
T ss_pred -----CCCCceEEEec---CCccccc
Confidence 12335788876 5555443
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-07 Score=93.94 Aligned_cols=274 Identities=12% Similarity=0.118 Sum_probs=155.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+....||.||.+||..-.. +.|.||.+.+ | +....+. ....
T Consensus 108 SVt~~~FshdgtlLATGdms---------------------------------G~v~v~~~st-g--~~~~~~~--~e~~ 149 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATGDMS---------------------------------GKVLVFKVST-G--GEQWKLD--QEVE 149 (399)
T ss_pred ceEEEEEccCceEEEecCCC---------------------------------ccEEEEEccc-C--ceEEEee--cccC
Confidence 46778899999888876543 5788998854 2 2333442 2334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....|.|-+..|++ +.....||.+.+..+..-++...++.. ...-.+.||||+|+....+..-..
T Consensus 150 dieWl~WHp~a~illA---------G~~DGsvWmw~ip~~~~~kv~~Gh~~~----ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 150 DIEWLKWHPRAHILLA---------GSTDGSVWMWQIPSQALCKVMSGHNSP----CTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred ceEEEEecccccEEEe---------ecCCCcEEEEECCCcceeeEecCCCCC----cccccccCCCceEEEEecCceEEE
Confidence 6888999998887777 445778999998876566666655432 556679999999997733211110
Q ss_pred C-CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC----------ccccc-
Q 002194 270 P-KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----------AVYTS- 336 (954)
Q Consensus 270 ~-~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~----------~~~~~- 336 (954)
. .+...|.- .+...++.. ..-+-.+......+.-......+.++. +|++....++ ....+
T Consensus 217 Wn~ktg~p~~-~~~~~e~~~------~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv 289 (399)
T KOG0296|consen 217 WNPKTGQPLH-KITQAEGLE------LPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV 289 (399)
T ss_pred EecCCCceeE-EecccccCc------CCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence 0 00000000 000000000 000000001111222223344555554 5554444331 11111
Q ss_pred --cccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCce
Q 002194 337 --LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (954)
Q Consensus 337 --~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~ 414 (954)
..||.+=...| .+...++|-|||......|.+..++ .++..+.|-+ ...|+
T Consensus 290 e~~~~ss~lpL~A-------------~G~vdG~i~iyD~a~~~~R~~c~he-------------~~V~~l~w~~-t~~l~ 342 (399)
T KOG0296|consen 290 ESIPSSSKLPLAA-------------CGSVDGTIAIYDLAASTLRHICEHE-------------DGVTKLKWLN-TDYLL 342 (399)
T ss_pred hhcccccccchhh-------------cccccceEEEEecccchhheeccCC-------------CceEEEEEcC-cchhe
Confidence 12222222222 2334568999999988888887765 3456778877 33332
Q ss_pred EEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEE
Q 002194 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (954)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (954)
-. ...+.|+.||+ ..|.....++.+...+..++.+||++.++..+.++. ..++.
T Consensus 343 t~-------------c~~g~v~~wDa--RtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~--a~VF~ 396 (399)
T KOG0296|consen 343 TA-------------CANGKVRQWDA--RTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT--ALVFE 396 (399)
T ss_pred ee-------------ccCceEEeeec--cccceEEEEecCchheeEEEEcCCCcEEEEecCCCe--EEEEe
Confidence 22 34668999996 555555666888888889999999999998876654 44443
|
|
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-07 Score=91.31 Aligned_cols=115 Identities=22% Similarity=0.236 Sum_probs=89.9
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEE
Q 002194 755 VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPIL 834 (954)
Q Consensus 755 ~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~L 834 (954)
.++.+||++.|.|+||.++++++..+|..+.+.+..+++........ ..+-+.. + .+|++
T Consensus 89 Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~~----------------~~~~~~~---~-~~~i~ 148 (206)
T KOG2112|consen 89 GIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASIGL----------------PGWLPGV---N-YTPIL 148 (206)
T ss_pred CCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchhhc----------------cCCcccc---C-cchhh
Confidence 47889999999999999999999999777777777777654221110 0000100 1 68999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 835 LVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 835 ii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
..||+.|++|| ..-+....+.|+..+..+++..|++.+|.... ..++.+..|+.+
T Consensus 149 ~~Hg~~d~~vp--~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~~-----~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 149 LCHGTADPLVP--FRFGEKSAQFLKSLGVRVTFKPYPGLGHSTSP-----QELDDLKSWIKT 203 (206)
T ss_pred eecccCCceee--hHHHHHHHHHHHHcCCceeeeecCCccccccH-----HHHHHHHHHHHH
Confidence 99999999999 88899999999999999999999999998752 346777888876
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-07 Score=94.97 Aligned_cols=195 Identities=15% Similarity=0.124 Sum_probs=109.6
Q ss_pred ccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 336 ~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
++-..-.+++|+..+.+ .+|.+|++.|.....+...... ....+.||||+.|+.
T Consensus 192 ~iGiA~~~k~imsas~d-------------t~i~lw~lkGq~L~~idtnq~~-------------n~~aavSP~GRFia~ 245 (420)
T KOG2096|consen 192 NIGIAGNAKYIMSASLD-------------TKICLWDLKGQLLQSIDTNQSS-------------NYDAAVSPDGRFIAV 245 (420)
T ss_pred EEeecCCceEEEEecCC-------------CcEEEEecCCceeeeecccccc-------------ccceeeCCCCcEEEE
Confidence 34555667888877744 3899999998766655543221 134679999997776
Q ss_pred EEEeccCCCccccccCCCeEEEEecCCCCCC--C---ceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGE--G---PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~--~---~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
.--+. .-.+|-.-. ..+|. + .-.|..+...+...+||+++++++..+.++. .+||..|..-
T Consensus 246 ~gFTp-----------DVkVwE~~f-~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~--wriwdtdVrY 311 (420)
T KOG2096|consen 246 SGFTP-----------DVKVWEPIF-TKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK--WRIWDTDVRY 311 (420)
T ss_pred ecCCC-----------CceEEEEEe-ccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc--EEEeeccceE
Confidence 51111 112322211 01221 1 1234556667788999999999998876654 8899888643
Q ss_pred CC-CCcEEEecCCCCCccCCCCCC-CeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEe
Q 002194 491 KD-VAPRILFDRSSEDVYSDPGSP-MMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (954)
Q Consensus 491 ~~-~~~~~l~~~~~~~~~~~~~~~-~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 568 (954)
.. ..|.++-..+... ....+.| .+..||.|+.++..... .|.++..++|+...-.
T Consensus 312 ~~~qDpk~Lk~g~~pl-~aag~~p~RL~lsP~g~~lA~s~gs----------------------~l~~~~se~g~~~~~~ 368 (420)
T KOG2096|consen 312 EAGQDPKILKEGSAPL-HAAGSEPVRLELSPSGDSLAVSFGS----------------------DLKVFASEDGKDYPEL 368 (420)
T ss_pred ecCCCchHhhcCCcch-hhcCCCceEEEeCCCCcEEEeecCC----------------------ceEEEEcccCccchhH
Confidence 21 2344443322111 1111222 26789999988877621 2667776666543221
Q ss_pred ccCcccccceeEEeccCCccccccccCCEEEEEEe
Q 002194 569 ESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKE 603 (954)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (954)
..- .+.... ..+|++||++++....
T Consensus 369 e~~----h~~~Is------~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 369 EDI----HSTTIS------SISYSSDGKYIATCGD 393 (420)
T ss_pred HHh----hcCcee------eEEecCCCcEEeeecc
Confidence 111 111111 2578999988764433
|
|
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-07 Score=108.23 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=63.1
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH----HHH
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN----LLA 778 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~----~a~ 778 (954)
.+...|+++||.|++ .+..|.|.+.....+.....+++.++++++++. .+.+++.++|||+||.+++. +++
T Consensus 211 Slv~~L~~qGf~V~~---iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa 285 (532)
T TIGR01838 211 SLVRWLVEQGHTVFV---ISWRNPDASQADKTFDDYIRDGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAA 285 (532)
T ss_pred HHHHHHHHCCcEEEE---EECCCCCcccccCChhhhHHHHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHH
Confidence 467889999999999 445566655443333344556688888888865 34568999999999998632 344
Q ss_pred hC-CCcccEEEEeccCCC
Q 002194 779 HA-PHLFCCGIARSGAYN 795 (954)
Q Consensus 779 ~~-p~~~~a~v~~~~~~~ 795 (954)
.. +++++.++.++...|
T Consensus 286 ~~~~~rv~slvll~t~~D 303 (532)
T TIGR01838 286 RGDDKRIKSATFFTTLLD 303 (532)
T ss_pred hCCCCccceEEEEecCcC
Confidence 44 678999998887655
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-07 Score=117.28 Aligned_cols=227 Identities=13% Similarity=0.155 Sum_probs=131.4
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCc-ccHHHHHHHHCCcEEEEcCCCCCCCCCCcc
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI-GSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~G~~V~~~~~~~~~G~G~~~ 730 (954)
+..+-|.|..-+..++...|.||++||..... ..|... .......|+++||.|++++. |.+.
T Consensus 49 ~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~-----------~~~d~~~~~s~v~~L~~~g~~v~~~d~------G~~~ 111 (994)
T PRK07868 49 YRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSA-----------DMWDVTRDDGAVGILHRAGLDPWVIDF------GSPD 111 (994)
T ss_pred EEEEEeCCCCccccccCCCCcEEEECCCCCCc-----------cceecCCcccHHHHHHHCCCEEEEEcC------CCCC
Confidence 44455666542111111247788899964221 122211 11235678899999999652 2221
Q ss_pred cch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCcccEEEEeccCCCCCCC-CCC--
Q 002194 731 AND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTLT-PFG-- 802 (954)
Q Consensus 731 ~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~~~~~-~~~-- 802 (954)
... ......+.++.++++.+.+.. .+++.++||||||.+++.+++.+ +++++.+|+++...|.... +..
T Consensus 112 ~~~~~~~~~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~ 188 (994)
T PRK07868 112 KVEGGMERNLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIP 188 (994)
T ss_pred hhHcCccCCHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccch
Confidence 111 112333445666666665543 24799999999999998888754 4589999886655432100 000
Q ss_pred --------------------Ccc--------------------------cc-ch--------------hh-hc-------
Q 002194 803 --------------------FQN--------------------------ED-RT--------------LW-EA------- 813 (954)
Q Consensus 803 --------------------~~~--------------------------~~-~~--------------~~-~~------- 813 (954)
... .. .. .| ..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~ 268 (994)
T PRK07868 189 AGLAAAAADFMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISE 268 (994)
T ss_pred hhhhhcccccchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHH
Confidence 000 00 00 01 00
Q ss_pred -HHHHHhcCcc-----------cccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEE-EEeCCCCCcC--C
Q 002194 814 -TSTYVEMSPF-----------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRL-VILPFESHGY--A 878 (954)
Q Consensus 814 -~~~~~~~sp~-----------~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~H~~--~ 878 (954)
...+...+.+ ..+.++++|+|+++|+.|..+| +..++.+.+.+.. .++ .+++++||.. .
T Consensus 269 ~~~~~~~~n~~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp--~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~ 342 (994)
T PRK07868 269 LLKQFIAHNRMMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQ--PASVRGIRRAAPN----AEVYESLIRAGHFGLVV 342 (994)
T ss_pred HHHHHHHhCcccCceEEECCEEcchhhCCCCEEEEEeCCCCCCC--HHHHHHHHHhCCC----CeEEEEeCCCCCEeeee
Confidence 0000000111 1256788999999999999998 8888888776532 244 5678899974 3
Q ss_pred CcccHHHHHHHHHHHHHHhcccCCCC
Q 002194 879 ARESIMHVLWETDRWLQKYCVSNTAD 904 (954)
Q Consensus 879 ~~~~~~~~~~~i~~fl~~~l~~~~~~ 904 (954)
......+++..+.+||.++-...+.+
T Consensus 343 g~~a~~~~wp~i~~wl~~~~~~~~~~ 368 (994)
T PRK07868 343 GSRAAQQTWPTVADWVKWLEGDGDKP 368 (994)
T ss_pred chhhhhhhChHHHHHHHHhccCCCCC
Confidence 45556788999999999987655444
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.8e-07 Score=91.28 Aligned_cols=263 Identities=13% Similarity=0.109 Sum_probs=154.5
Q ss_pred CChhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCC
Q 002194 98 PPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG 177 (954)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~ 177 (954)
-|+++...++.+......||+-|.+||....+ +.+.|||+.+- +
T Consensus 13 ~PEel~~tld~~~a~~~~Fs~~G~~lAvGc~n---------------------------------G~vvI~D~~T~---~ 56 (405)
T KOG1273|consen 13 YPEELTHTLDNPLAECCQFSRWGDYLAVGCAN---------------------------------GRVVIYDFDTF---R 56 (405)
T ss_pred ChHhhceeccCCccceEEeccCcceeeeeccC---------------------------------CcEEEEEcccc---c
Confidence 45666667777778889999999999998765 57889998542 3
Q ss_pred ceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeE
Q 002194 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (954)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~ 257 (954)
..+.|+.+. ..+....||+||+.|+..++ ...+-++|+..|...+-...+.. +....|.|-.+.
T Consensus 57 iar~lsaH~--~pi~sl~WS~dgr~LltsS~---------D~si~lwDl~~gs~l~rirf~sp-----v~~~q~hp~k~n 120 (405)
T KOG1273|consen 57 IARMLSAHV--RPITSLCWSRDGRKLLTSSR---------DWSIKLWDLLKGSPLKRIRFDSP-----VWGAQWHPRKRN 120 (405)
T ss_pred hhhhhhccc--cceeEEEecCCCCEeeeecC---------CceeEEEeccCCCceeEEEccCc-----cceeeeccccCC
Confidence 445555433 46899999999999998764 45677778777765333222322 557778876544
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC--c-c
Q 002194 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--A-V 333 (954)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~--~-~ 333 (954)
.+++..- ...-+++++ ++..+.|... + .
T Consensus 121 ~~va~~~------------------------------------------------~~sp~vi~~s~~~h~~Lp~d~d~dl 152 (405)
T KOG1273|consen 121 KCVATIM------------------------------------------------EESPVVIDFSDPKHSVLPKDDDGDL 152 (405)
T ss_pred eEEEEEe------------------------------------------------cCCcEEEEecCCceeeccCCCcccc
Confidence 4433110 011234455 4444444432 1 1
Q ss_pred ---ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 334 ---YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 334 ---~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
.....|.+-|++|+..... +.+-+++.++-+...-..... -..+.++.++-.|
T Consensus 153 n~sas~~~fdr~g~yIitGtsK-------------Gkllv~~a~t~e~vas~rits-----------~~~IK~I~~s~~g 208 (405)
T KOG1273|consen 153 NSSASHGVFDRRGKYIITGTSK-------------GKLLVYDAETLECVASFRITS-----------VQAIKQIIVSRKG 208 (405)
T ss_pred ccccccccccCCCCEEEEecCc-------------ceEEEEecchheeeeeeeech-----------heeeeEEEEeccC
Confidence 1223488889999876633 278888887654332111100 0234567888888
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCC----CCCCceEEeeccc-----ccCceeeccCCceEEEEEeccccce
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV----QGEGPEILHKLDL-----RYGGISWCDDSLALVYESWYKTRRT 481 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~g~~~~~l~~~~~-----~~~~~~~spDg~~l~~~~~~~~~~~ 481 (954)
+.+++- .....|.+|+.... .+++++...+... .-....||-||.+|+.++. +.-
T Consensus 209 ~~liiN-------------tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~---~aH 272 (405)
T KOG1273|consen 209 RFLIIN-------------TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA---RAH 272 (405)
T ss_pred cEEEEe-------------cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccc---cce
Confidence 866554 22335556653111 1223322211111 1134688999999988762 235
Q ss_pred EEEEEcCCCCCCCcEEEecCC
Q 002194 482 RTWVISPGSKDVAPRILFDRS 502 (954)
Q Consensus 482 ~l~~~d~~~~~~~~~~l~~~~ 502 (954)
.||++....| ..+.+..+.
T Consensus 273 aLYIWE~~~G--sLVKILhG~ 291 (405)
T KOG1273|consen 273 ALYIWEKSIG--SLVKILHGT 291 (405)
T ss_pred eEEEEecCCc--ceeeeecCC
Confidence 6898888776 444444443
|
|
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-07 Score=93.36 Aligned_cols=207 Identities=16% Similarity=0.130 Sum_probs=129.2
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcc
Q 002194 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (954)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~ 730 (954)
..+..|+.|.. .+.+|+|+++||. +-++.++....+.++++||+|+++......+
T Consensus 32 PkpLlI~tP~~-----~G~yPVilF~HG~---------------~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~----- 86 (307)
T PF07224_consen 32 PKPLLIVTPSE-----AGTYPVILFLHGF---------------NLYNSFYSQLLAHIASHGFIVVAPQLYTLFP----- 86 (307)
T ss_pred CCCeEEecCCc-----CCCccEEEEeech---------------hhhhHHHHHHHHHHhhcCeEEEechhhcccC-----
Confidence 35677888864 4569999999994 1234445567778899999999976643322
Q ss_pred cchhhHHHHHHHHHHHHHHHHHc--C------CCCCCcEEEEeeChHHHHHHHHHHhCC--CcccEEEEeccCCCCCCCC
Q 002194 731 ANDRFVEQLVACAEAAVEEVVRR--G------VAHPSKIAVGGHSYGAFMTANLLAHAP--HLFCCGIARSGAYNRTLTP 800 (954)
Q Consensus 731 ~~~~~~~~~~~D~~~av~~l~~~--~------~~d~~ri~l~G~S~GG~~a~~~a~~~p--~~~~a~v~~~~~~~~~~~~ 800 (954)
.....++++..++++||.+. . ..+.++++++|||.||..|..+|..+. -.|.++|.+.|+.......
T Consensus 87 ---p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~~ 163 (307)
T PF07224_consen 87 ---PDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKGK 163 (307)
T ss_pred ---CCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCCC
Confidence 12356788889999999764 1 256679999999999999999998662 2488888888864321110
Q ss_pred CCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCC-----CCCCCchH--HHHHHHHHHHhCCCcEEEEEeCCC
Q 002194 801 FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEED-----NNSGTLTM--QSDRFFNALKGHGALCRLVILPFE 873 (954)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D-----~~v~~~~~--~~~~~~~~l~~~g~~~~~~~~~~~ 873 (954)
++ .+. ...+.|.. =++..|+++|-...- -..||.+. +=+++|+..|.. +-..+-.+-
T Consensus 164 -------~t---~P~-iLty~p~S--F~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk~p---~~hfV~~dY 227 (307)
T PF07224_consen 164 -------QT---PPP-ILTYVPQS--FDLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECKPP---CAHFVAKDY 227 (307)
T ss_pred -------CC---CCC-eeecCCcc--cccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhccc---ceeeeeccc
Confidence 00 000 00111111 135689999874433 11122233 347888888754 555566677
Q ss_pred CCcCCC------------------ccc-----HHHHHHHHHHHHHHhcccC
Q 002194 874 SHGYAA------------------RES-----IMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 874 ~H~~~~------------------~~~-----~~~~~~~i~~fl~~~l~~~ 901 (954)
||.-.- .+. +.-+--.+++||+.||...
T Consensus 228 GHmDmLDD~~~g~~G~~~~clCkng~~pr~pMRr~vgGivVAFL~a~l~~~ 278 (307)
T PF07224_consen 228 GHMDMLDDDTPGIIGKLSYCLCKNGKSPRDPMRRFVGGIVVAFLKAYLEGD 278 (307)
T ss_pred ccccccccCccccccceeeEeecCCCCcchHHHHhhhhhHHHHHHHHHcCC
Confidence 885311 011 1223335899999998654
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.4e-08 Score=103.91 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=101.9
Q ss_pred HHcCCCCC--CcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC---------CCCCCCccccchhhhc--HHHH
Q 002194 751 VRRGVAHP--SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT---------LTPFGFQNEDRTLWEA--TSTY 817 (954)
Q Consensus 751 ~~~~~~d~--~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~---------~~~~~~~~~~~~~~~~--~~~~ 817 (954)
.+...++. ++.+|+||||||+-|+.+|+++|++|+.+.+++|+++.. ...++-..... .|.. ...+
T Consensus 142 ~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~~~-~~G~~~~~~w 220 (316)
T COG0627 142 EAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFNA-MLGPDSDPAW 220 (316)
T ss_pred HHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccHHH-hcCCCccccc
Confidence 33334454 389999999999999999999999999999999998754 22222111111 1211 1245
Q ss_pred HhcCcccccCC--------------CCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccH
Q 002194 818 VEMSPFMSANK--------------LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883 (954)
Q Consensus 818 ~~~sp~~~~~~--------------~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~ 883 (954)
.+++|...+.+ ...++++-+|..|..........+.+.++++..|.+..+..+++..|.+.. .
T Consensus 221 ~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~G~Hsw~~---w 297 (316)
T COG0627 221 QENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVRDQPGGDHSWYF---W 297 (316)
T ss_pred cccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceeeeCCCCCcCHHH---H
Confidence 55666665543 446788889999977420123478899999999999999888888998743 3
Q ss_pred HHHHHHHHHHHHHhcc
Q 002194 884 MHVLWETDRWLQKYCV 899 (954)
Q Consensus 884 ~~~~~~i~~fl~~~l~ 899 (954)
...+..++.|+...+.
T Consensus 298 ~~~l~~~~~~~a~~l~ 313 (316)
T COG0627 298 ASQLADHLPWLAGALG 313 (316)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5667788888888775
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.4e-07 Score=96.55 Aligned_cols=248 Identities=13% Similarity=0.112 Sum_probs=136.3
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce-----eecccCCCccccccccceeEecCCeEEEEEecC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-----RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (954)
.++..++-|.|-+++. ++-...|..+|..|-.. ++|-+...- .+.+++||+.|..|++++..
T Consensus 169 ~Vsal~~Dp~GaR~~s---------Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h----~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVS---------GSLDYTVKFWDFQGMDASMRSFRQLQPCETH----QINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred EEEEeeecCCCceeee---------ccccceEEEEecccccccchhhhccCccccc----ccceeeecCCCCeEEEEecC
Confidence 6788899999999877 34466777778777432 344433332 37799999999888776211
Q ss_pred CCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe---CCceeEcCCCccccccccCC
Q 002194 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DGTVKEIGPPAVYTSLDPSP 341 (954)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~---~G~~~~l~~~~~~~~~~~Sp 341 (954)
.... . ..+|+....-...+.-|+.|+ .|.+ ..++..+|.|
T Consensus 236 aqak---------------------l----------~DRdG~~~~e~~KGDQYI~Dm~nTKGHi------a~lt~g~whP 278 (641)
T KOG0772|consen 236 AQAK---------------------L----------LDRDGFEIVEFSKGDQYIRDMYNTKGHI------AELTCGCWHP 278 (641)
T ss_pred ccee---------------------E----------EccCCceeeeeeccchhhhhhhccCCce------eeeecccccc
Confidence 1000 0 011111000001222333343 1222 3456678999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~ 420 (954)
+.|-.+.+... ++.+.+|+++. +...++....... +.+..+...+|+|||+.|+-.
T Consensus 279 ~~k~~FlT~s~------------DgtlRiWdv~~~k~q~qVik~k~~~-------g~Rv~~tsC~~nrdg~~iAag---- 335 (641)
T KOG0772|consen 279 DNKEEFLTCSY------------DGTLRIWDVNNTKSQLQVIKTKPAG-------GKRVPVTSCAWNRDGKLIAAG---- 335 (641)
T ss_pred CcccceEEecC------------CCcEEEEecCCchhheeEEeeccCC-------CcccCceeeecCCCcchhhhc----
Confidence 99988777633 34899999984 3223322221111 222334578999999987654
Q ss_pred cCCCccccccCCCeEEEEecCCCCCCCceEE----eecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcE
Q 002194 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL----HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (954)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l----~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (954)
-..+.|-.|+. +.-+..+... ......+.+++||+||++|+..+.++. .++|.+.--. ++.
T Consensus 336 ---------c~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t--LKvWDLrq~k---kpL 400 (641)
T KOG0772|consen 336 ---------CLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT--LKVWDLRQFK---KPL 400 (641)
T ss_pred ---------ccCCceeeeec-CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc--eeeeeccccc---cch
Confidence 22345666663 1111111111 222347889999999999998877765 5666554322 222
Q ss_pred EEecCCCCCccCCCCCCCeeeccCCcEEEEEEe
Q 002194 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 497 ~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (954)
..... ....| +... ..||||.+.|+....
T Consensus 401 ~~~tg-L~t~~--~~td-c~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 401 NVRTG-LPTPF--PGTD-CCFSPDDKLILTGTS 429 (641)
T ss_pred hhhcC-CCccC--CCCc-cccCCCceEEEeccc
Confidence 21111 11111 1111 679999988776653
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.6e-06 Score=85.14 Aligned_cols=252 Identities=12% Similarity=0.091 Sum_probs=157.0
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce--eecccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
+.+....|+|||..+|. +....+|+++++.+... -.+.-+ .+.+-.+.|.+||..|+...
T Consensus 48 geI~~~~F~P~gs~~aS---------gG~Dr~I~LWnv~gdceN~~~lkgH-----sgAVM~l~~~~d~s~i~S~g---- 109 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFAS---------GGSDRAIVLWNVYGDCENFWVLKGH-----SGAVMELHGMRDGSHILSCG---- 109 (338)
T ss_pred ceEEEEEECCCCCeEee---------cCCcceEEEEeccccccceeeeccc-----cceeEeeeeccCCCEEEEec----
Confidence 47888999999998877 34467888888766433 222211 22267899999999999771
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-ccccccccCCCC
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDE 343 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~-~~~~~~~~SpDG 343 (954)
....++.+|. +|+. ++.... ..+..+..+.=|
T Consensus 110 ---------------------------------------------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg 144 (338)
T KOG0265|consen 110 ---------------------------------------------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRG 144 (338)
T ss_pred ---------------------------------------------CCceEEEEecccceeeehhccccceeeecCccccC
Confidence 1245778888 8854 334333 455566666667
Q ss_pred cEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 344 k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
-.++.+..+ ++++.|||+..++.......+ ....++.|..++..+.-.
T Consensus 145 ~~lv~Sgsd------------D~t~kl~D~R~k~~~~t~~~k-------------yqltAv~f~d~s~qv~sg------- 192 (338)
T KOG0265|consen 145 PQLVCSGSD------------DGTLKLWDIRKKEAIKTFENK-------------YQLTAVGFKDTSDQVISG------- 192 (338)
T ss_pred CeEEEecCC------------CceEEEEeecccchhhccccc-------------eeEEEEEecccccceeec-------
Confidence 677666533 348999999865533222100 112356677766654332
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCC
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 503 (954)
.-.+.|-+|++ ..+.-...+..+...+.+++.||+|..+...+.+.. .++|.+..-........++....
T Consensus 193 ------gIdn~ikvWd~--r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t--vrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 193 ------GIDNDIKVWDL--RKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT--VRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred ------cccCceeeecc--ccCcceEEeecccCceeeEEeccCCCccccccccce--EEEEEecccCCCCceEEEeecch
Confidence 23456777874 344444555666677889999999999998877765 66777666554222244554432
Q ss_pred CCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEe
Q 002194 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (954)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 568 (954)
....- .--..+|||+++.+.+... ..++|+||..+....-.+
T Consensus 263 hnfek--nlL~cswsp~~~~i~ags~---------------------dr~vyvwd~~~r~~lykl 304 (338)
T KOG0265|consen 263 HNFEK--NLLKCSWSPNGTKITAGSA---------------------DRFVYVWDTTSRRILYKL 304 (338)
T ss_pred hhhhh--hcceeeccCCCCccccccc---------------------cceEEEeecccccEEEEc
Confidence 22110 0011579999999988763 235999998765544333
|
|
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=119.43 Aligned_cols=129 Identities=18% Similarity=0.169 Sum_probs=91.1
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHC-C-cEEEEcCCC-CCCCCC
Q 002194 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-G-FAILGGPTT-PIIGEG 727 (954)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G-~~V~~~~~~-~~~G~G 727 (954)
-+...+|.|....+.+ ++|+||++|||+|..+... .+ ....++.+ + ++|+..+|+ +..|+.
T Consensus 78 cl~l~i~~p~~~~~~~--~~pv~v~ihGG~~~~g~~~--------~~------~~~~~~~~~~~~~vv~~~yRlg~~g~~ 141 (493)
T cd00312 78 CLYLNVYTPKNTKPGN--SLPVMVWIHGGGFMFGSGS--------LY------PGDGLAREGDNVIVVSINYRLGVLGFL 141 (493)
T ss_pred CCeEEEEeCCCCCCCC--CCCEEEEEcCCccccCCCC--------CC------ChHHHHhcCCCEEEEEecccccccccc
Confidence 3677888897643223 4899999999976543321 11 12344544 3 899988887 666665
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--CCCcccEEEEeccCCC
Q 002194 728 DEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAYN 795 (954)
Q Consensus 728 ~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~~ 795 (954)
............+.|+..|++|+.++ ...||++|.|+|+|+||.++.+++.. .+.+|+++|+.+|...
T Consensus 142 ~~~~~~~~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 142 STGDIELPGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 43222223345688999999999886 24799999999999999999988876 3457999999988654
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-06 Score=99.63 Aligned_cols=169 Identities=8% Similarity=0.028 Sum_probs=97.3
Q ss_pred ccccccccCCCCc-EEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccC
Q 002194 332 AVYTSLDPSPDEK-YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (954)
Q Consensus 332 ~~~~~~~~SpDGk-~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD 409 (954)
..+..+.|+|++. .|+..+. ++.|.+||++.++. ..+..+ ...+..++|+||
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs~-------------DgtVrIWDl~tg~~~~~l~~h-------------~~~V~sla~spd 179 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAGA-------------DMVVNVWDVERGKAVEVIKCH-------------SDQITSLEWNLD 179 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEeC-------------CCEEEEEECCCCeEEEEEcCC-------------CCceEEEEEECC
Confidence 6677899999975 4554442 23899999986543 333222 134578999999
Q ss_pred CCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeeccc-ccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL-RYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~-~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
|+.++.. +..+.|.+||+ .++.....+..+.. ....+.|++++..|+...........|.++|+
T Consensus 180 G~lLatg-------------s~Dg~IrIwD~--rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 180 GSLLCTT-------------SKDKKLNIIDP--RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred CCEEEEe-------------cCCCEEEEEEC--CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence 9866554 34568899996 33333334433332 23457899998888765532211123444555
Q ss_pred CCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEE
Q 002194 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (954)
Q Consensus 489 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 567 (954)
... ..+....+..... ....+.|++|++.++....+ ...|++||+..++....
T Consensus 245 r~~-~~p~~~~~~d~~~-----~~~~~~~d~d~~~L~lggkg--------------------Dg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 245 RKM-ASPYSTVDLDQSS-----ALFIPFFDEDTNLLYIGSKG--------------------EGNIRCFELMNERLTFC 297 (493)
T ss_pred CCC-CCceeEeccCCCC-----ceEEEEEcCCCCEEEEEEeC--------------------CCeEEEEEeeCCceEEE
Confidence 442 1233222211111 11114688899877665421 12489999987765443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.9e-06 Score=104.96 Aligned_cols=163 Identities=13% Similarity=0.122 Sum_probs=95.8
Q ss_pred eEEEEEe-CCc-eeEcCCC-ccccccccCC-CCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCccc
Q 002194 315 QLVLVSL-DGT-VKEIGPP-AVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAED 389 (954)
Q Consensus 315 ~l~~~~~-~G~-~~~l~~~-~~~~~~~~Sp-DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~ 389 (954)
.|.++|+ +++ ...+... ..+..++|+| ||..|+..+.+ +.+.+||+..+.. ..+...
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-------------g~v~iWd~~~~~~~~~~~~~----- 617 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD-------------GSVKLWSINQGVSIGTIKTK----- 617 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC-------------CEEEEEECCCCcEEEEEecC-----
Confidence 4666777 554 3444444 7788999997 78888777633 3899999985432 222211
Q ss_pred CCccccccccCccceeec-cCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCC-CceEEeecccccCceeeccCC
Q 002194 390 IPIAFNSVRKGMRSINWR-SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-GPEILHKLDLRYGGISWCDDS 467 (954)
Q Consensus 390 ~p~~~~~~~~g~~~~~ws-pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-~~~~l~~~~~~~~~~~~spDg 467 (954)
..+..+.|+ ++|+.++.. +..+.|++|++ ..+. ....+..+...+..+.|+ ++
T Consensus 618 ---------~~v~~v~~~~~~g~~latg-------------s~dg~I~iwD~--~~~~~~~~~~~~h~~~V~~v~f~-~~ 672 (793)
T PLN00181 618 ---------ANICCVQFPSESGRSLAFG-------------SADHKVYYYDL--RNPKLPLCTMIGHSKTVSYVRFV-DS 672 (793)
T ss_pred ---------CCeEEEEEeCCCCCEEEEE-------------eCCCeEEEEEC--CCCCccceEecCCCCCEEEEEEe-CC
Confidence 123456784 567766554 34568999996 2222 223445556667788997 77
Q ss_pred ceEEEEEeccccceEEEEEcCCCC--CCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 468 LALVYESWYKTRRTRTWVISPGSK--DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
..|+.++.++. .+||.+..... ...+......+...+. .+.|+|+|.+|+...
T Consensus 673 ~~lvs~s~D~~--ikiWd~~~~~~~~~~~~l~~~~gh~~~i~------~v~~s~~~~~lasgs 727 (793)
T PLN00181 673 STLVSSSTDNT--LKLWDLSMSISGINETPLHSFMGHTNVKN------FVGLSVSDGYIATGS 727 (793)
T ss_pred CEEEEEECCCE--EEEEeCCCCccccCCcceEEEcCCCCCee------EEEEcCCCCEEEEEe
Confidence 77777665443 66666543211 0112222222222111 177999999887776
|
|
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.8e-09 Score=109.81 Aligned_cols=154 Identities=18% Similarity=0.197 Sum_probs=100.2
Q ss_pred cEEEEcCCCCCCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEe
Q 002194 713 FAILGGPTTPIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (954)
|.|++ .+.+|.|.+.. ..........|+.+.++.+++.-.+ +++.++||||||.+++.+++++|++++++|+.
T Consensus 1 f~vi~---~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~ 75 (230)
T PF00561_consen 1 FDVIL---FDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVLI 75 (230)
T ss_dssp EEEEE---EECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEEE
T ss_pred CEEEE---EeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEEE
Confidence 56777 55667777763 1333345567778888888776434 35999999999999999999999999999999
Q ss_pred ccCC--C----CCCCCC-CCcc-------------------ccc---hhh-----------------hc-----------
Q 002194 791 SGAY--N----RTLTPF-GFQN-------------------EDR---TLW-----------------EA----------- 813 (954)
Q Consensus 791 ~~~~--~----~~~~~~-~~~~-------------------~~~---~~~-----------------~~----------- 813 (954)
+++. . ...... .+.. ... ..+ ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (230)
T PF00561_consen 76 SPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNMF 155 (230)
T ss_dssp SESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred eeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhhc
Confidence 8841 0 000000 0000 000 000 00
Q ss_pred ---HHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 002194 814 ---TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (954)
Q Consensus 814 ---~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (954)
...+...++...+.++++|+|+++|+.|..+| +.....+.+.+.. .+++++++.||..
T Consensus 156 ~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p--~~~~~~~~~~~~~----~~~~~~~~~GH~~ 216 (230)
T PF00561_consen 156 WNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVP--PESSEQLAKLIPN----SQLVLIEGSGHFA 216 (230)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSH--HHHHHHHHHHSTT----EEEEEETTCCSTH
T ss_pred cccccccccccccccccccCCCeEEEEeCCCCCCC--HHHHHHHHHhcCC----CEEEECCCCChHH
Confidence 00011122334556799999999999999998 7777775444332 6899999999986
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-06 Score=94.16 Aligned_cols=184 Identities=14% Similarity=0.084 Sum_probs=99.3
Q ss_pred ceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhh
Q 002194 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (954)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (954)
..+|.++|.++.+........... .....++|||++++++.
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~----h~~~~~s~Dgr~~yv~~----------------------------------- 55 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAP----HAGLKFSPDGRYLYVAN----------------------------------- 55 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTE----EEEEE-TT-SSEEEEEE-----------------------------------
T ss_pred CCEEEEEECCCCeEEEEEcCCCCc----eeEEEecCCCCEEEEEc-----------------------------------
Confidence 679999998887755443332221 23567899999988761
Q ss_pred hccCccccccccccccceEEEEEe-CCc-eeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC
Q 002194 298 LLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (954)
Q Consensus 298 ~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g 375 (954)
..+.|.++|+ +++ ..++..+....++++|+|||+++.+.... +++.++|.++
T Consensus 56 --------------rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~------------~~v~v~D~~t 109 (369)
T PF02239_consen 56 --------------RDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEP------------GTVSVIDAET 109 (369)
T ss_dssp --------------TTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEET------------TEEEEEETTT
T ss_pred --------------CCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCC------------CceeEecccc
Confidence 1135778999 664 55565556667899999999998776442 3888999886
Q ss_pred ceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE--e
Q 002194 376 IFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--H 452 (954)
Q Consensus 376 ~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~ 452 (954)
.+. +.+......... ...++..+.-+|++...++. ....+++|+++. ........ .
T Consensus 110 le~v~~I~~~~~~~~~------~~~Rv~aIv~s~~~~~fVv~------------lkd~~~I~vVdy---~d~~~~~~~~i 168 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDG------PESRVAAIVASPGRPEFVVN------------LKDTGEIWVVDY---SDPKNLKVTTI 168 (369)
T ss_dssp --EEEEEE--EE-TTT------S---EEEEEE-SSSSEEEEE------------ETTTTEEEEEET---TTSSCEEEEEE
T ss_pred ccceeecccccccccc------cCCCceeEEecCCCCEEEEE------------EccCCeEEEEEe---ccccccceeee
Confidence 543 444332111100 01223345667776643333 133568999985 22222222 2
Q ss_pred ecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 453 KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 453 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
..........|+|||++++.+.+..+ .+-.+|+.+
T Consensus 169 ~~g~~~~D~~~dpdgry~~va~~~sn---~i~viD~~~ 203 (369)
T PF02239_consen 169 KVGRFPHDGGFDPDGRYFLVAANGSN---KIAVIDTKT 203 (369)
T ss_dssp E--TTEEEEEE-TTSSEEEEEEGGGT---EEEEEETTT
T ss_pred cccccccccccCcccceeeecccccc---eeEEEeecc
Confidence 22233455789999999877654332 344444443
|
... |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.5e-07 Score=101.78 Aligned_cols=203 Identities=18% Similarity=0.217 Sum_probs=121.0
Q ss_pred CCCCceecC-CCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCC----Cceeeeec
Q 002194 110 PLPALSFSP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL----GQEIEIQG 184 (954)
Q Consensus 110 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~----~~~~~lt~ 184 (954)
.+..++||| |++.||..+.+ +.|.+|++...+.. .....+.+
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~D---------------------------------gtIkIWdi~~~~~~~~~~~~l~~L~g 123 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASED---------------------------------GTIMGWGIPEEGLTQNISDPIVHLQG 123 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCC---------------------------------CEEEEEecCCCccccccCcceEEecC
Confidence 577899999 89988888776 57899998643210 01122332
Q ss_pred CCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecC
Q 002194 185 FPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (954)
Q Consensus 185 ~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (954)
+...+..+.|+|++..++.+.. ....|.++|+++++........... +..++|+|||+.|+...
T Consensus 124 --H~~~V~~l~f~P~~~~iLaSgs--------~DgtVrIWDl~tg~~~~~l~~h~~~----V~sla~spdG~lLatgs-- 187 (493)
T PTZ00421 124 --HTKKVGIVSFHPSAMNVLASAG--------ADMVVNVWDVERGKAVEVIKCHSDQ----ITSLEWNLDGSLLCTTS-- 187 (493)
T ss_pred --CCCcEEEEEeCcCCCCEEEEEe--------CCCEEEEEECCCCeEEEEEcCCCCc----eEEEEEECCCCEEEEec--
Confidence 2246888999999754444332 2456777888877654433322222 67899999999888661
Q ss_pred CCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC--ccccccccC
Q 002194 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP--AVYTSLDPS 340 (954)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~--~~~~~~~~S 340 (954)
....|.++|+ +|+. ..+... .......|+
T Consensus 188 -----------------------------------------------~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~ 220 (493)
T PTZ00421 188 -----------------------------------------------KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA 220 (493)
T ss_pred -----------------------------------------------CCCEEEEEECCCCcEEEEEecCCCCcceEEEEc
Confidence 1234667787 6643 233322 223456799
Q ss_pred CCCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 341 pDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
+++..|+....... ..+.+.+||+.... ........ .......+.|++|++.++.. .
T Consensus 221 ~~~~~ivt~G~s~s---------~Dr~VklWDlr~~~~p~~~~~~d-----------~~~~~~~~~~d~d~~~L~lg-g- 278 (493)
T PTZ00421 221 KRKDLIITLGCSKS---------QQRQIMLWDTRKMASPYSTVDLD-----------QSSALFIPFFDEDTNLLYIG-S- 278 (493)
T ss_pred CCCCeEEEEecCCC---------CCCeEEEEeCCCCCCceeEeccC-----------CCCceEEEEEcCCCCEEEEE-E-
Confidence 99888776542211 13489999987422 11111100 00122346799999855443 1
Q ss_pred ccCCCccccccCCCeEEEEec
Q 002194 420 QDGGDAKVEVTPRDIIYTQQA 440 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~ 440 (954)
.+.+.|.+|++
T Consensus 279 ----------kgDg~Iriwdl 289 (493)
T PTZ00421 279 ----------KGEGNIRCFEL 289 (493)
T ss_pred ----------eCCCeEEEEEe
Confidence 12457888886
|
|
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.9e-07 Score=81.21 Aligned_cols=166 Identities=14% Similarity=0.142 Sum_probs=98.4
Q ss_pred HHHHHHHHCCcEEEE--cCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC
Q 002194 703 TSVLLWLARGFAILG--GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (954)
Q Consensus 703 ~~~~~la~~G~~V~~--~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~ 780 (954)
..+..|+.+|+.|.. .+|+-.+-+|++..+. --.......+.++..|.+. .+..++++.|+||||-++.+++..-
T Consensus 34 ~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~-~~~t~~~~~~~~~aql~~~--l~~gpLi~GGkSmGGR~aSmvade~ 110 (213)
T COG3571 34 AVAAALARRGWLVARFEFPYMAARRTGRRKPPP-GSGTLNPEYIVAIAQLRAG--LAEGPLIIGGKSMGGRVASMVADEL 110 (213)
T ss_pred HHHHHHHhCceeEEEeecchhhhccccCCCCcC-ccccCCHHHHHHHHHHHhc--ccCCceeeccccccchHHHHHHHhh
Confidence 456778999999998 3333333344322211 1112222234445555554 3456899999999999999988654
Q ss_pred CCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHh
Q 002194 781 PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (954)
Q Consensus 781 p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~ 860 (954)
.-.+.+++|..-.+. +.+.++. --..++..+++|+||.||+.|.+-. .++. ... .
T Consensus 111 ~A~i~~L~clgYPfh----ppGKPe~--------------~Rt~HL~gl~tPtli~qGtrD~fGt--r~~V---a~y--~ 165 (213)
T COG3571 111 QAPIDGLVCLGYPFH----PPGKPEQ--------------LRTEHLTGLKTPTLITQGTRDEFGT--RDEV---AGY--A 165 (213)
T ss_pred cCCcceEEEecCccC----CCCCccc--------------chhhhccCCCCCeEEeecccccccC--HHHH---Hhh--h
Confidence 334777777653221 1111111 1124566789999999999998754 3333 111 2
Q ss_pred CCCcEEEEEeCCCCCcCCCcc---------cHHHHHHHHHHHHHH
Q 002194 861 HGALCRLVILPFESHGYAARE---------SIMHVLWETDRWLQK 896 (954)
Q Consensus 861 ~g~~~~~~~~~~~~H~~~~~~---------~~~~~~~~i~~fl~~ 896 (954)
...++++++++++.|.+.... ......+++..|+.+
T Consensus 166 ls~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~~~~~ 210 (213)
T COG3571 166 LSDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAGWARR 210 (213)
T ss_pred cCCceEEEEeccCccccccccccccccHHHHHHHHHHHHHHHHhh
Confidence 245799999999999874222 122344566667654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.4e-06 Score=89.32 Aligned_cols=336 Identities=12% Similarity=0.061 Sum_probs=185.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
++...++||-|++|++.-.. +|.+|.-+ ... .|..+.. .
T Consensus 34 p~~~~~~SP~G~~l~~~~~~----------------------------------~V~~~~g~----~~~--~l~~~~~-~ 72 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAA----------------------------------GVECWGGP----SKA--KLVRFRH-P 72 (561)
T ss_pred chhheeecCcchheehhhcc----------------------------------ceEEcccc----chh--heeeeec-C
Confidence 56688999999999876553 56665432 122 3332322 3
Q ss_pred cccceeecCCCCeEEEEEeecc------ccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEec
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDA------EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~------~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (954)
.+....|||.|++|..=.+.+- ...-....+++++|..+|....-........ -....+.||-|.++++..
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~-~~Wp~~k~s~~D~y~ARv-- 149 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY-LGWPVLKFSIDDKYVARV-- 149 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc-cccceeeeeecchhhhhh--
Confidence 6888899999998877554331 1111223378899988876643322211100 001246788777766644
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCC----Ccccccccc
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP----PAVYTSLDP 339 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~----~~~~~~~~~ 339 (954)
-...|+++.+++...+..- ..++..+.|
T Consensus 150 ------------------------------------------------v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 150 ------------------------------------------------VGSSLYIHEITDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred ------------------------------------------------ccCeEEEEecCCccccCchhhccccceeeEEe
Confidence 1234667776443222211 256788999
Q ss_pred CCCC--cEEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002194 340 SPDE--KYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 340 SpDG--k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~ 416 (954)
||-| .-|+|-.-.. .+.+..+.+|.+-- +..+..+-.. ...-.+.|.+.|+.+.+.
T Consensus 182 sP~~n~~~la~~tPEk--------~~kpa~~~i~sIp~~s~l~tk~lfk-------------~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 182 SPEGNHDELAYWTPEK--------LNKPAMVRILSIPKNSVLVTKNLFK-------------VSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred cCCCCCceEEEEcccc--------CCCCcEEEEEEccCCCeeeeeeeEe-------------ecccEEEEecCCceEEEE
Confidence 9975 3455544221 12244667776652 2222222111 111358899999999887
Q ss_pred EEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcE
Q 002194 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (954)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (954)
+.+.-.... .. -+...||++++ +....+........+..+.|.|+++.++..+.... ..+-..++.+.
T Consensus 241 ~~t~~ksnK-sy-fgesnLyl~~~---~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p--a~~s~~~lr~N----- 308 (561)
T COG5354 241 VMTHTKSNK-SY-FGESNLYLLRI---TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP--ASVSVFDLRGN----- 308 (561)
T ss_pred EEEeeeccc-ce-eccceEEEEee---cccccceeccccccceeeeecccCCceeEEecccc--cceeecccccc-----
Confidence 554321111 00 12357899986 44333333344667788999999999887765443 34555666552
Q ss_pred EEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCccccc
Q 002194 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYY 576 (954)
Q Consensus 497 ~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 576 (954)
+.+-.+.+. ...+.|||.++++++..-+. -...+-.||..+ +...+..-.+-
T Consensus 309 l~~~~Pe~~------rNT~~fsp~~r~il~agF~n------------------l~gni~i~~~~~-rf~~~~~~~~~--- 360 (561)
T COG5354 309 LRFYFPEQK------RNTIFFSPHERYILFAGFDN------------------LQGNIEIFDPAG-RFKVAGAFNGL--- 360 (561)
T ss_pred eEEecCCcc------cccccccCcccEEEEecCCc------------------cccceEEeccCC-ceEEEEEeecC---
Confidence 111111111 11166999999998865221 122366777753 33434332221
Q ss_pred ceeEEeccCCccccccccCCEEEEEEecCC
Q 002194 577 ETTVALMSDQTEGDLYLNQLKILTSKESKT 606 (954)
Q Consensus 577 ~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~ 606 (954)
-.. -..||||+..+.....++.
T Consensus 361 --n~s------~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 361 --NTS------YCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred --Cce------EeeccCCceEEEecCCCcc
Confidence 011 1469999988776666554
|
|
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.4e-07 Score=89.08 Aligned_cols=122 Identities=14% Similarity=0.129 Sum_probs=71.9
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC---CCCC---ccccchhhhcHHHHHhcCccccc-CCCC
Q 002194 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---PFGF---QNEDRTLWEATSTYVEMSPFMSA-NKLK 830 (954)
Q Consensus 758 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~sp~~~~-~~~~ 830 (954)
++.+.|+|.|+||+.|.+++.+++ +++ |+++|.+..... ..+. .......+-....+.....+... ..-.
T Consensus 58 ~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~~~~~ 134 (187)
T PF05728_consen 58 PENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPYPTNP 134 (187)
T ss_pred CCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccccCCC
Confidence 345999999999999999998883 555 888887652110 0000 00000001011112221111111 1224
Q ss_pred CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 831 ~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
.++|+++++.|++++ +..+...+. . +..++.+|.+|.+.. ..+.+..|.+|+
T Consensus 135 ~~~lvll~~~DEvLd--~~~a~~~~~---~----~~~~i~~ggdH~f~~---f~~~l~~i~~f~ 186 (187)
T PF05728_consen 135 ERYLVLLQTGDEVLD--YREAVAKYR---G----CAQIIEEGGDHSFQD---FEEYLPQIIAFL 186 (187)
T ss_pred ccEEEEEecCCcccC--HHHHHHHhc---C----ceEEEEeCCCCCCcc---HHHHHHHHHHhh
Confidence 589999999999998 755544443 2 244466888999864 456678888886
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-07 Score=92.73 Aligned_cols=192 Identities=19% Similarity=0.168 Sum_probs=117.5
Q ss_pred CCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC-------------CCc---
Q 002194 666 KDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE-------------GDE--- 729 (954)
Q Consensus 666 ~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~-------------G~~--- 729 (954)
|.+++|+||+.||-. +++..+..+...+|++||+|.+...+|.... +..
T Consensus 114 k~~k~PvvvFSHGLg---------------gsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~ 178 (399)
T KOG3847|consen 114 KNDKYPVVVFSHGLG---------------GSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWI 178 (399)
T ss_pred CCCCccEEEEecccc---------------cchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccce
Confidence 345699999999931 2344455677789999999999777765431 000
Q ss_pred -----ccc-------hhhHHHHHHHHHHHHHHHHHc---------------------CCCCCCcEEEEeeChHHHHHHHH
Q 002194 730 -----EAN-------DRFVEQLVACAEAAVEEVVRR---------------------GVAHPSKIAVGGHSYGAFMTANL 776 (954)
Q Consensus 730 -----~~~-------~~~~~~~~~D~~~av~~l~~~---------------------~~~d~~ri~l~G~S~GG~~a~~~ 776 (954)
..+ ..-...-..++..|++-|++. +.+|.++++|+|||+||..++..
T Consensus 179 ~ir~v~~~ekef~irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ 258 (399)
T KOG3847|consen 179 KIRLVEANEKEFHIRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIAS 258 (399)
T ss_pred EeeeeccCceeEEeeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhh
Confidence 000 111223356666666666542 23677899999999999999998
Q ss_pred HHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHH
Q 002194 777 LAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (954)
Q Consensus 777 a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (954)
.+.+ ..|+|+|+..+. +.+.. . ....+++.|+|+|.-+ |..- .+....-+
T Consensus 259 ss~~-t~FrcaI~lD~W----M~Pl~-----~---------------~~~~~arqP~~finv~-~fQ~----~en~~vmK 308 (399)
T KOG3847|consen 259 SSSH-TDFRCAIALDAW----MFPLD-----Q---------------LQYSQARQPTLFINVE-DFQW----NENLLVMK 308 (399)
T ss_pred hccc-cceeeeeeeeee----ecccc-----h---------------hhhhhccCCeEEEEcc-cccc----hhHHHHHH
Confidence 8877 679999988762 11110 0 1223457899999833 4332 22333334
Q ss_pred HHHhCCCcEEEEEeCCCCCcCC-C---------------------cccHHHHHHHHHHHHHHhcccCC
Q 002194 857 ALKGHGALCRLVILPFESHGYA-A---------------------RESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 857 ~l~~~g~~~~~~~~~~~~H~~~-~---------------------~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
+....+..-.+..+.|+-|.-. . .+..+...+..++||++|+....
T Consensus 309 ki~~~n~g~~~it~~GsVHqnfsDfpfv~p~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~d~~q 376 (399)
T KOG3847|consen 309 KIESQNEGNHVITLDGSVHQNFSDFPFVTPNWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHLDLVQ 376 (399)
T ss_pred hhhCCCccceEEEEccceecccccCccccHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhhhhhc
Confidence 4444444456777888877421 0 11123345668999999986543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-06 Score=83.42 Aligned_cols=278 Identities=12% Similarity=0.110 Sum_probs=162.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCcc---------ccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCcee
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLE---------ELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~ 180 (954)
+...+.+.-+|..|-..+.+..+.+| .+.++...+..+.++.+.......+.+..+.|||++. |+
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t----Gk-- 85 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET----GK-- 85 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC----Cc--
Confidence 56677888889888777777555555 3344555566777787777666677778899999965 43
Q ss_pred eeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECC-------CCce-eecccCCCccccccccceeEe
Q 002194 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-------TGKA-RPLFQSPDIYLNAIFDNFVWV 252 (954)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~-------~g~~-~~lt~~~~~~~~~~~~~~~ws 252 (954)
+|.....+..+...-||++|..++++.+.- . .....|.+.++. +.++ .++.. ++.. +....|+
T Consensus 86 ~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~--m--g~~~~v~~fdi~~~~~~~~s~ep~~kI~t-~~sk----it~a~Wg 156 (327)
T KOG0643|consen 86 QLATWKTNSPVKRVDFSFGGNLILASTDKQ--M--GYTCFVSVFDIRDDSSDIDSEEPYLKIPT-PDSK----ITSALWG 156 (327)
T ss_pred EEEEeecCCeeEEEeeccCCcEEEEEehhh--c--CcceEEEEEEccCChhhhcccCceEEecC-Cccc----eeeeeec
Confidence 344444556788889999999999987522 1 234455555554 3332 23322 2222 5678899
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCC
Q 002194 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGP 330 (954)
Q Consensus 253 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~ 330 (954)
|-|+.|++.. ..+.|-.+|+ +|. ...-..
T Consensus 157 ~l~~~ii~Gh-------------------------------------------------e~G~is~~da~~g~~~v~s~~ 187 (327)
T KOG0643|consen 157 PLGETIIAGH-------------------------------------------------EDGSISIYDARTGKELVDSDE 187 (327)
T ss_pred ccCCEEEEec-------------------------------------------------CCCcEEEEEcccCceeeechh
Confidence 9999998651 1234667788 763 222222
Q ss_pred -C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EE-eccCCCcccCCccccccccCccceee
Q 002194 331 -P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RE-LCDLPLAEDIPIAFNSVRKGMRSINW 406 (954)
Q Consensus 331 -~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~-l~~~~~~~~~p~~~~~~~~g~~~~~w 406 (954)
. ..+.++.+|||..+.+..+.+. +-.+||..+-++ +. .+..| ++..++
T Consensus 188 ~h~~~Ind~q~s~d~T~FiT~s~Dt-------------takl~D~~tl~v~Kty~te~P---------------vN~aai 239 (327)
T KOG0643|consen 188 EHSSKINDLQFSRDRTYFITGSKDT-------------TAKLVDVRTLEVLKTYTTERP---------------VNTAAI 239 (327)
T ss_pred hhccccccccccCCcceEEecccCc-------------cceeeeccceeeEEEeeeccc---------------ccceec
Confidence 2 6788999999999988887443 566788775433 22 22222 234566
Q ss_pred ccCCCCceEEEEeccCCCcccccc---CCC---eEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 407 RSDKPSTLYWAETQDGGDAKVEVT---PRD---IIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 407 spDg~~i~~~~~~~~~~~~~~~~~---~~~---~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
+|--..++.- ||+...++. .+. ....+++ .--.+..++..+-+.+++++|+|||+.-... .++ +.
T Consensus 240 sP~~d~Vilg-----GGqeA~dVTTT~~r~GKFEArFyh~--i~eEEigrvkGHFGPINsvAfhPdGksYsSG-GED-G~ 310 (327)
T KOG0643|consen 240 SPLLDHVILG-----GGQEAMDVTTTSTRAGKFEARFYHL--IFEEEIGRVKGHFGPINSVAFHPDGKSYSSG-GED-GY 310 (327)
T ss_pred ccccceEEec-----CCceeeeeeeecccccchhhhHHHH--HHHHHhccccccccCcceeEECCCCcccccC-CCC-ce
Confidence 7755444432 111100000 000 0000000 0011233455667788999999999954333 233 34
Q ss_pred eEEEEEcC
Q 002194 481 TRTWVISP 488 (954)
Q Consensus 481 ~~l~~~d~ 488 (954)
.+|..++.
T Consensus 311 VR~h~Fd~ 318 (327)
T KOG0643|consen 311 VRLHHFDS 318 (327)
T ss_pred EEEEEecc
Confidence 67776654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.5e-07 Score=95.97 Aligned_cols=220 Identities=10% Similarity=0.075 Sum_probs=146.6
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCcee---ecccCCC
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR---PLFQSPD 239 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~---~lt~~~~ 239 (954)
+-|.||++...|.-.+..+|-.++.+..+.....+|||+.|+. +.+...|-+||+..-..+ +||...-
T Consensus 440 gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLiv---------GGeastlsiWDLAapTprikaeltssap 510 (705)
T KOG0639|consen 440 GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIV---------GGEASTLSIWDLAAPTPRIKAELTSSAP 510 (705)
T ss_pred CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEe---------ccccceeeeeeccCCCcchhhhcCCcch
Confidence 4689999976543333445555555568899999999999998 445677777787654443 2332221
Q ss_pred ccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEE
Q 002194 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (954)
Q Consensus 240 ~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~ 319 (954)
. -..++.|||.+..|... ..+.|.++
T Consensus 511 a-----CyALa~spDakvcFscc-------------------------------------------------sdGnI~vw 536 (705)
T KOG0639|consen 511 A-----CYALAISPDAKVCFSCC-------------------------------------------------SDGNIAVW 536 (705)
T ss_pred h-----hhhhhcCCccceeeeec-------------------------------------------------cCCcEEEE
Confidence 1 23678899998766541 22457778
Q ss_pred Ee-CC-ceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccc
Q 002194 320 SL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNS 396 (954)
Q Consensus 320 ~~-~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~ 396 (954)
|+ +. .++++... .+...+.+|+||..|..... ++.+.-||+..+. ++..+...
T Consensus 537 DLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl-------------DntvRcWDlregr--qlqqhdF~--------- 592 (705)
T KOG0639|consen 537 DLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL-------------DNTVRCWDLREGR--QLQQHDFS--------- 592 (705)
T ss_pred EcccceeeecccCCCCCceeEEecCCCceeecCCC-------------ccceeehhhhhhh--hhhhhhhh---------
Confidence 88 55 35555554 77888999999999876653 3478889987432 22222211
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEec
Q 002194 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (954)
Q Consensus 397 ~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 476 (954)
..+.++...|.|..+++- -....+++... .+.+..+|..++.-+-++.|++-|++++....+
T Consensus 593 --SQIfSLg~cP~~dWlavG-------------Mens~vevlh~---skp~kyqlhlheScVLSlKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 593 --SQIFSLGYCPTGDWLAVG-------------MENSNVEVLHT---SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKD 654 (705)
T ss_pred --hhheecccCCCccceeee-------------cccCcEEEEec---CCccceeecccccEEEEEEecccCceeeecCch
Confidence 123456788999988886 23457778774 666677888888888999999999998877554
Q ss_pred cccceEEEEEcCC
Q 002194 477 KTRRTRTWVISPG 489 (954)
Q Consensus 477 ~~~~~~l~~~d~~ 489 (954)
+- ...|+..-.
T Consensus 655 nl--LnawrtPyG 665 (705)
T KOG0639|consen 655 NL--LNAWRTPYG 665 (705)
T ss_pred hh--hhhccCccc
Confidence 42 445665543
|
|
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.8e-07 Score=94.41 Aligned_cols=213 Identities=15% Similarity=0.098 Sum_probs=122.3
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE--cCCCCCCCCCCc
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG--GPTTPIIGEGDE 729 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~--~~~~~~~G~G~~ 729 (954)
.+..+++|+..+... .|++|++.|.. .+.|.......+.-|+++|++.+. .+| ||.+
T Consensus 77 a~~~~~~P~~~~~~~---rp~~IhLagTG-------------Dh~f~rR~~l~a~pLl~~gi~s~~le~Py-----yg~R 135 (348)
T PF09752_consen 77 ARFQLLLPKRWDSPY---RPVCIHLAGTG-------------DHGFWRRRRLMARPLLKEGIASLILENPY-----YGQR 135 (348)
T ss_pred eEEEEEECCccccCC---CceEEEecCCC-------------ccchhhhhhhhhhHHHHcCcceEEEeccc-----cccc
Confidence 445566787752222 68898988831 123332233346678888998877 444 3333
Q ss_pred ccc----------hh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC
Q 002194 730 EAN----------DR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (954)
Q Consensus 730 ~~~----------~~---~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (954)
... .+ .+...+.+....+.|+.++++. ++++.|.||||.||..+++..|..+..+-+.++.+..
T Consensus 136 kP~~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~~G~~---~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs 212 (348)
T PF09752_consen 136 KPKDQRRSSLRNVSDLFVMGRATILESRALLHWLEREGYG---PLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSAS 212 (348)
T ss_pred ChhHhhcccccchhHHHHHHhHHHHHHHHHHHHHHhcCCC---ceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCC
Confidence 111 11 1345688889999999999653 8999999999999999999998876666666543221
Q ss_pred -CC--------CCCCCcccc-------------------------chhhhcHHHH----HhcCcccccCCCCC-----CE
Q 002194 797 -TL--------TPFGFQNED-------------------------RTLWEATSTY----VEMSPFMSANKLKK-----PI 833 (954)
Q Consensus 797 -~~--------~~~~~~~~~-------------------------~~~~~~~~~~----~~~sp~~~~~~~~~-----P~ 833 (954)
.+ ..|..-... ...+.+.+.. ..++-..++.+..+ .+
T Consensus 213 ~vFt~Gvls~~i~W~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~i 292 (348)
T PF09752_consen 213 VVFTEGVLSNSINWDALEKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAI 292 (348)
T ss_pred cchhhhhhhcCCCHHHHHHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcE
Confidence 00 111000000 0000001111 11122233444433 48
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 834 Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
.++.+++|..|| ..+...+.+... | +++..+++ ||.-........+.+.|.+=|+
T Consensus 293 i~V~A~~DaYVP--r~~v~~Lq~~WP--G--sEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 293 IFVAAKNDAYVP--RHGVLSLQEIWP--G--SEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred EEEEecCceEec--hhhcchHHHhCC--C--CeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 889999999998 666655544443 3 46666887 9975433344455555665443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-07 Score=98.56 Aligned_cols=268 Identities=9% Similarity=0.095 Sum_probs=158.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..+.|.|+|++|+..+.. +..-+|+... ..-+.-+. .+..
T Consensus 98 ~V~~v~WtPeGRRLltgs~S---------------------------------GEFtLWNg~~---fnFEtilQ--aHDs 139 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQS---------------------------------GEFTLWNGTS---FNFETILQ--AHDS 139 (464)
T ss_pred ceeeEEEcCCCceeEeeccc---------------------------------ccEEEecCce---eeHHHHhh--hhcc
Confidence 35678999999999987764 3556776421 01111121 1334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....||+||.+++- ++...-|-.+++.-....-+-...... +..++|||....++..+
T Consensus 140 ~Vr~m~ws~~g~wmiS---------gD~gG~iKyWqpnmnnVk~~~ahh~ea----IRdlafSpnDskF~t~S------- 199 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWMIS---------GDKGGMIKYWQPNMNNVKIIQAHHAEA----IRDLAFSPNDSKFLTCS------- 199 (464)
T ss_pred cceeEEEccCCCEEEE---------cCCCceEEecccchhhhHHhhHhhhhh----hheeccCCCCceeEEec-------
Confidence 7889999999999887 333444444454333322222222122 77899998766555441
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--CCceeEcCCC-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~--~G~~~~l~~~-~~~~~~~~SpDGk~l 346 (954)
..+.|-++|. ..+.+.|... ..+.+++|.|.-..|
T Consensus 200 ------------------------------------------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLi 237 (464)
T KOG0284|consen 200 ------------------------------------------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLI 237 (464)
T ss_pred ------------------------------------------CCCeEEEEeccCCchhheeccCCCCcceeccCCcccee
Confidence 1123445554 3455666655 677899999976666
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
+..+.+ +-|.+||..++. +-.+..+. .-+..+.|+|+|..|+-.
T Consensus 238 asgskD-------------nlVKlWDprSg~cl~tlh~HK-------------ntVl~~~f~~n~N~Llt~--------- 282 (464)
T KOG0284|consen 238 ASGSKD-------------NLVKLWDPRSGSCLATLHGHK-------------NTVLAVKFNPNGNWLLTG--------- 282 (464)
T ss_pred EEccCC-------------ceeEeecCCCcchhhhhhhcc-------------ceEEEEEEcCCCCeeEEc---------
Confidence 655533 268899988543 23333222 234568899999765554
Q ss_pred cccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCC
Q 002194 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~ 505 (954)
+....+-++|+ ..=.+......+.-++..+.|+|=...|+.+...++. ...|.+++... ...+...+...
T Consensus 283 ----skD~~~kv~Di--R~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~p---~~~i~~AHd~~ 352 (464)
T KOG0284|consen 283 ----SKDQSCKVFDI--RTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEEP---LGEIPPAHDGE 352 (464)
T ss_pred ----cCCceEEEEeh--hHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEecccccc---ccCCCcccccc
Confidence 33446777875 1123334445566778899999988888777655542 55666664332 12223333334
Q ss_pred ccCCCCCCCeeeccCCcEEEEEE
Q 002194 506 VYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 506 ~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+.+ ++|.|=|..|+-..
T Consensus 353 iws------l~~hPlGhil~tgs 369 (464)
T KOG0284|consen 353 IWS------LAYHPLGHILATGS 369 (464)
T ss_pred eee------eeccccceeEeecC
Confidence 444 78889888776644
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-06 Score=86.14 Aligned_cols=196 Identities=16% Similarity=0.205 Sum_probs=118.5
Q ss_pred cccceeecCC-CCeEEEEEeeccccCCCCceEEEEEECCCCc---eeecccCCCccccccccceeEecCCeEEEEEecCC
Q 002194 190 KLNFVTWSQD-GKHLAFSIRIDAEDSSSSKLRVWVADVDTGK---ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (954)
Q Consensus 190 ~~~~~~wSPD-G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~---~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~ 265 (954)
.+-..+|+|- |..||... +...|.+++..++. .+.++. + ..+..+.+++|+|.|+.|+.+
T Consensus 16 r~W~~awhp~~g~ilAscg---------~Dk~vriw~~~~~~s~~ck~vld--~-~hkrsVRsvAwsp~g~~La~a---- 79 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCG---------TDKAVRIWSTSSGDSWTCKTVLD--D-GHKRSVRSVAWSPHGRYLASA---- 79 (312)
T ss_pred cEEEEEeccCCceEEEeec---------CCceEEEEecCCCCcEEEEEecc--c-cchheeeeeeecCCCcEEEEe----
Confidence 5778999997 66555433 34566666665322 222222 1 223348899999999999876
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCc---eeEcCCC-ccccccccCC
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT---VKEIGPP-AVYTSLDPSP 341 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~---~~~l~~~-~~~~~~~~Sp 341 (954)
+-+ .+.-||.-. +++ ...|..+ ..+..++||+
T Consensus 80 -----------------SFD--------------------------~t~~Iw~k~-~~efecv~~lEGHEnEVK~Vaws~ 115 (312)
T KOG0645|consen 80 -----------------SFD--------------------------ATVVIWKKE-DGEFECVATLEGHENEVKCVAWSA 115 (312)
T ss_pred -----------------ecc--------------------------ceEEEeecC-CCceeEEeeeeccccceeEEEEcC
Confidence 111 222222211 332 2222233 5677899999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~ 420 (954)
+|++||..+.++ .+|+|.++. .+..-+.-+. .+...+-.+.|.|.-..|+-.
T Consensus 116 sG~~LATCSRDK-------------SVWiWe~deddEfec~aVL~----------~HtqDVK~V~WHPt~dlL~S~---- 168 (312)
T KOG0645|consen 116 SGNYLATCSRDK-------------SVWIWEIDEDDEFECIAVLQ----------EHTQDVKHVIWHPTEDLLFSC---- 168 (312)
T ss_pred CCCEEEEeeCCC-------------eEEEEEecCCCcEEEEeeec----------cccccccEEEEcCCcceeEEe----
Confidence 999999988554 799999884 3333222211 122345678899965533322
Q ss_pred cCCCccccccCCCeEEEEecCCCCCCC---ceEEeecccccCceeeccCCceEEEEEeccccceEEEE
Q 002194 421 DGGDAKVEVTPRDIIYTQQAEPVQGEG---PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (954)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~---~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (954)
+..+.|-+|.-+ .++. ...|......+..++|.+.|.+|+..+++.+ .+||+
T Consensus 169 ---------SYDnTIk~~~~~--~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t--v~Iw~ 223 (312)
T KOG0645|consen 169 ---------SYDNTIKVYRDE--DDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT--VSIWR 223 (312)
T ss_pred ---------ccCCeEEEEeec--CCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc--eEeee
Confidence 334556666531 1222 3445555557788999999999999877765 77888
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.8e-06 Score=94.06 Aligned_cols=118 Identities=14% Similarity=0.081 Sum_probs=72.1
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..+..++|+|++..++.+... ++.+.+||+.+++. ..+.. . ..+.+++|+|||
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~------------DgtIrIWDl~tg~~~~~i~~-~-------------~~V~SlswspdG 179 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGF------------DSFVNIWDIENEKRAFQINM-P-------------KKLSSLKWNIKG 179 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeC------------CCeEEEEECCCCcEEEEEec-C-------------CcEEEEEECCCC
Confidence 667889999999987655422 23899999986543 22221 1 234689999999
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCc-----eeeccCCceEEEEEeccccceEEEE
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG-----ISWCDDSLALVYESWYKTRRTRTWV 485 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~-----~~~spDg~~l~~~~~~~~~~~~l~~ 485 (954)
+.++.. .....|.+||+ .++.....+..+.+.... ..|++|+.+|+..+..+.....|.+
T Consensus 180 ~lLat~-------------s~D~~IrIwD~--Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkL 244 (568)
T PTZ00420 180 NLLSGT-------------CVGKHMHIIDP--RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKL 244 (568)
T ss_pred CEEEEE-------------ecCCEEEEEEC--CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEE
Confidence 966544 23457899996 333333444444433221 2356899998887655432223444
Q ss_pred EcCCC
Q 002194 486 ISPGS 490 (954)
Q Consensus 486 ~d~~~ 490 (954)
+|+..
T Consensus 245 WDlr~ 249 (568)
T PTZ00420 245 WDLKN 249 (568)
T ss_pred EECCC
Confidence 55543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4e-06 Score=90.24 Aligned_cols=305 Identities=13% Similarity=0.172 Sum_probs=158.1
Q ss_pred hhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeec
Q 002194 105 IVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQG 184 (954)
Q Consensus 105 ~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~ 184 (954)
-+.-|.+..+.|||..++|+.-+.. ....++..+.. ..|.|||+.+ |.......+
T Consensus 246 RF~Hp~Vq~idfSP~EkYLVT~s~~----------------p~~~~~~d~e~------~~l~IWDI~t-G~lkrsF~~-- 300 (698)
T KOG2314|consen 246 RFYHPGVQFIDFSPNEKYLVTYSPE----------------PIIVEEDDNEG------QQLIIWDIAT-GLLKRSFPV-- 300 (698)
T ss_pred hccCCCceeeecCCccceEEEecCC----------------ccccCcccCCC------ceEEEEEccc-cchhcceec--
Confidence 3445678899999999999876652 11112222222 3799999975 322222111
Q ss_pred CCCCCc--ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEe
Q 002194 185 FPDGAK--LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (954)
Q Consensus 185 ~~~~~~--~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (954)
. .+.. -....||-|+|++|=.. ...|-+++...-.. + ......+. ++..+.|||-+.+|+|.+
T Consensus 301 ~-~~~~~~WP~frWS~DdKy~Arm~----------~~sisIyEtpsf~l--l-d~Kslki~-gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 301 I-KSPYLKWPIFRWSHDDKYFARMT----------GNSISIYETPSFML--L-DKKSLKIS-GIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred c-CCCccccceEEeccCCceeEEec----------cceEEEEecCceee--e-cccccCCc-cccCcccCCCcceEEEEc
Confidence 1 1222 23458999999887654 24555555433111 1 11110000 167899999999999984
Q ss_pred cCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCc--ccccccc
Q 002194 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPA--VYTSLDP 339 (954)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~--~~~~~~~ 339 (954)
+.....+ .++-++.+ ++..-+..+-- ..--+-|
T Consensus 366 pe~~~~p--------------------------------------------arvtL~evPs~~~iRt~nlfnVsDckLhW 401 (698)
T KOG2314|consen 366 PETNNIP--------------------------------------------ARVTLMEVPSKREIRTKNLFNVSDCKLHW 401 (698)
T ss_pred ccccCCc--------------------------------------------ceEEEEecCccceeeeccceeeeccEEEe
Confidence 4322220 11223333 33211111111 1123568
Q ss_pred CCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 340 SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
-..|.+|.+..++..-.. ....-.++.|+.++.+.+ |.-......-+-.++|-|.|.+.+.....
T Consensus 402 Qk~gdyLcvkvdR~tK~~---~~g~f~n~eIfrireKdI------------pve~velke~vi~FaWEP~gdkF~vi~g~ 466 (698)
T KOG2314|consen 402 QKSGDYLCVKVDRHTKSK---VKGQFSNLEIFRIREKDI------------PVEVVELKESVIAFAWEPHGDKFAVISGN 466 (698)
T ss_pred ccCCcEEEEEEEeecccc---ccceEeeEEEEEeeccCC------------CceeeecchheeeeeeccCCCeEEEEEcc
Confidence 889999999776543110 000111455555443221 11000111223468899999998877211
Q ss_pred ccCCCccccccCCCeEEEEecCCCCCCCceEEee-cccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002194 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 498 (954)
. ....-..|-+.. ++..++.+.. .....+.+.|||.|+.+|.++-.. ++..|+.+|++-.+. +.
T Consensus 467 ~--------~k~tvsfY~~e~---~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s-~~g~l~F~D~~~a~~--k~- 531 (698)
T KOG2314|consen 467 T--------VKNTVSFYAVET---NIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVS-RRGDLEFYDTDYADL--KD- 531 (698)
T ss_pred c--------cccceeEEEeec---CCCchhhhhhhcccccceEEEcCCCcEEEEEEecc-cccceEEEecchhhh--hh-
Confidence 1 011223444442 3444443322 224467899999999999876543 346788888774111 11
Q ss_pred ecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+..+... ....+.|.|.|++++..+
T Consensus 532 ~~~~eh~-----~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 532 TASPEHF-----AATEVEWDPTGRYVVTSS 556 (698)
T ss_pred ccCcccc-----ccccceECCCCCEEEEee
Confidence 1111100 111167999999998876
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.7e-06 Score=93.92 Aligned_cols=278 Identities=11% Similarity=0.095 Sum_probs=167.6
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
..+.+...||. ...||..- ...||+++..+++..+|....... +.++.|+++|+.|++..
T Consensus 177 DfY~nlldWss-~n~laVal----------g~~vylW~~~s~~v~~l~~~~~~~----vtSv~ws~~G~~LavG~----- 236 (484)
T KOG0305|consen 177 DFYLNLLDWSS-ANVLAVAL----------GQSVYLWSASSGSVTELCSFGEEL----VTSVKWSPDGSHLAVGT----- 236 (484)
T ss_pred cHhhhHhhccc-CCeEEEEe----------cceEEEEecCCCceEEeEecCCCc----eEEEEECCCCCEEEEee-----
Confidence 33667778995 34566543 578999999999999998775332 78999999999999761
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--CCceeEcCC-C-ccccccccCCCC
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGP-P-AVYTSLDPSPDE 343 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~--~G~~~~l~~-~-~~~~~~~~SpDG 343 (954)
..+.+.++|. ...++.+.. . ..+...+|. +
T Consensus 237 --------------------------------------------~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~ 270 (484)
T KOG0305|consen 237 --------------------------------------------SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--S 270 (484)
T ss_pred --------------------------------------------cCCeEEEEehhhccccccccCCcCceeEEEecc--C
Confidence 1234556666 334555555 3 777888898 3
Q ss_pred cEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002194 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (954)
Q Consensus 344 k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~ 422 (954)
..+...+ . ...|..+|+...+. .. + ..++...+-.+.|++|++.++--
T Consensus 271 ~~lssGs-r------------~~~I~~~dvR~~~~~~~-~-----------~~~H~qeVCgLkws~d~~~lASG------ 319 (484)
T KOG0305|consen 271 SVLSSGS-R------------DGKILNHDVRISQHVVS-T-----------LQGHRQEVCGLKWSPDGNQLASG------ 319 (484)
T ss_pred ceEEEec-C------------CCcEEEEEEecchhhhh-h-----------hhcccceeeeeEECCCCCeeccC------
Confidence 3333333 2 22677777763221 11 0 11233455679999999976543
Q ss_pred CCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCC
Q 002194 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (954)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 502 (954)
+..+.+++||. ........++.+...+..++|+|=-+-|+........ ..|...+..++ ......+..
T Consensus 320 -------gnDN~~~Iwd~--~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D-~~i~fwn~~~g--~~i~~vdtg 387 (484)
T KOG0305|consen 320 -------GNDNVVFIWDG--LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD-RCIKFWNTNTG--ARIDSVDTG 387 (484)
T ss_pred -------CCccceEeccC--CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcc-cEEEEEEcCCC--cEecccccC
Confidence 44668899985 3444556778889999999999987766665432221 34555565554 222212211
Q ss_pred CCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEE-eccCcccccceeEE
Q 002194 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI-WESDKEKYYETTVA 581 (954)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~~~ 581 (954)
. -+-+ +.||+..+-++...-. + ...|-+|+..+-+.... ...... +.
T Consensus 388 s-QVcs------L~Wsk~~kEi~sthG~-------------s------~n~i~lw~~ps~~~~~~l~gH~~R-----Vl- 435 (484)
T KOG0305|consen 388 S-QVCS------LIWSKKYKELLSTHGY-------------S------ENQITLWKYPSMKLVAELLGHTSR-----VL- 435 (484)
T ss_pred C-ceee------EEEcCCCCEEEEecCC-------------C------CCcEEEEeccccceeeeecCCcce-----eE-
Confidence 1 1222 8899999888877611 1 12466676655433222 222211 22
Q ss_pred eccCCccccccccCCEEEEEEecCCCCceEEEEEC
Q 002194 582 LMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSW 616 (954)
Q Consensus 582 ~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~ 616 (954)
..++||||.+++......+ +.+|++
T Consensus 436 ------~la~SPdg~~i~t~a~DET----lrfw~~ 460 (484)
T KOG0305|consen 436 ------YLALSPDGETIVTGAADET----LRFWNL 460 (484)
T ss_pred ------EEEECCCCCEEEEecccCc----EEeccc
Confidence 2578999987775444333 555554
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=94.43 Aligned_cols=257 Identities=11% Similarity=0.130 Sum_probs=153.1
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccce-----------------eeeeeecCCCCCCcceeeEeceEEEEccCC
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEK-----------------LAGLRIDGKCNTRSRMSFYTGIGIHQLFPD 173 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 173 (954)
+-...|||||++|+..+-++...+|.+....++ +--+.++.+......++-++.|.+|.+.+
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t- 294 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET- 294 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-
Confidence 446789999999999988877777755432111 11234444444444444457899999965
Q ss_pred CCCCc-eeeee-cCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeE
Q 002194 174 GKLGQ-EIEIQ-GFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW 251 (954)
Q Consensus 174 g~~~~-~~~lt-~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w 251 (954)
|. .++.. .++ ..+...+||-|+.+|+-.+ -...+.+-.+.+|+.-+-..+.... +....|
T Consensus 295 ---G~ClRrFdrAHt--kGvt~l~FSrD~SqiLS~s---------fD~tvRiHGlKSGK~LKEfrGHsSy----vn~a~f 356 (508)
T KOG0275|consen 295 ---GQCLRRFDRAHT--KGVTCLSFSRDNSQILSAS---------FDQTVRIHGLKSGKCLKEFRGHSSY----VNEATF 356 (508)
T ss_pred ---chHHHHhhhhhc--cCeeEEEEccCcchhhccc---------ccceEEEeccccchhHHHhcCcccc----ccceEE
Confidence 43 22221 122 3588999999999999854 2455666667777765444444333 668899
Q ss_pred ecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc----ee
Q 002194 252 VNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----VK 326 (954)
Q Consensus 252 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~----~~ 326 (954)
++||..|..+ +.+ ++ +-+++. +++ -+
T Consensus 357 t~dG~~iisa---------------------SsD--------------------------gt--vkvW~~KtteC~~Tfk 387 (508)
T KOG0275|consen 357 TDDGHHIISA---------------------SSD--------------------------GT--VKVWHGKTTECLSTFK 387 (508)
T ss_pred cCCCCeEEEe---------------------cCC--------------------------cc--EEEecCcchhhhhhcc
Confidence 9999999876 222 11 223333 332 12
Q ss_pred EcCCCccccccccCCCC-cEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCcccee
Q 002194 327 EIGPPAVYTSLDPSPDE-KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (954)
Q Consensus 327 ~l~~~~~~~~~~~SpDG-k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~ 405 (954)
.+.....+.++-.-|.. ..+++.. + .+.+++.++.|..++..+....... .--...
T Consensus 388 ~~~~d~~vnsv~~~PKnpeh~iVCN-r------------sntv~imn~qGQvVrsfsSGkREgG----------dFi~~~ 444 (508)
T KOG0275|consen 388 PLGTDYPVNSVILLPKNPEHFIVCN-R------------SNTVYIMNMQGQVVRSFSSGKREGG----------DFINAI 444 (508)
T ss_pred CCCCcccceeEEEcCCCCceEEEEc-C------------CCeEEEEeccceEEeeeccCCccCC----------ceEEEE
Confidence 22222333344444432 2333322 2 2389999999988888776543211 112356
Q ss_pred eccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEE
Q 002194 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYE 473 (954)
Q Consensus 406 wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~ 473 (954)
.||.|..|+.. .....+|-+.. ..|+-.+.+.-++.++-+++-.|-...|+.-
T Consensus 445 lSpkGewiYci-------------gED~vlYCF~~--~sG~LE~tl~VhEkdvIGl~HHPHqNllAsY 497 (508)
T KOG0275|consen 445 LSPKGEWIYCI-------------GEDGVLYCFSV--LSGKLERTLPVHEKDVIGLTHHPHQNLLASY 497 (508)
T ss_pred ecCCCcEEEEE-------------ccCcEEEEEEe--ecCceeeeeecccccccccccCcccchhhhh
Confidence 89999987776 44567888775 4555556666667777777777765555443
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-06 Score=99.01 Aligned_cols=257 Identities=14% Similarity=0.129 Sum_probs=154.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeee--------eecCCCCCCcceeeEeceEEEEccCCCCCCceee
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGL--------RIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~ 181 (954)
....+.|.|||++|..+..++....+.-..++.+...+ .+.-..+.....+....+.++.... + ....-
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps-~--~~~~i 91 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS-G--EEDTI 91 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC-C--Cccce
Confidence 45678999999999988877555544333332221111 1111222222223335677777643 2 12224
Q ss_pred eecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 182 lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
|+.++ ..+...+++-||++||+.+ ....|-+++.+.+.....+...... +..+.+.|.|.+|+++
T Consensus 92 L~Rft--lp~r~~~v~g~g~~iaags---------dD~~vK~~~~~D~s~~~~lrgh~ap----Vl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 92 LARFT--LPIRDLAVSGSGKMIAAGS---------DDTAVKLLNLDDSSQEKVLRGHDAP----VLQLSYDPKGNFLAVS 156 (933)
T ss_pred eeeee--ccceEEEEecCCcEEEeec---------CceeEEEEeccccchheeecccCCc----eeeeeEcCCCCEEEEE
Confidence 55444 3578899999999999954 4778888888776555555444332 6788999999999987
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee-EcC---CC-----
Q 002194 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIG---PP----- 331 (954)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-~l~---~~----- 331 (954)
. ..+.++.+++ +|... .++ ..
T Consensus 157 s-------------------------------------------------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~ 187 (933)
T KOG1274|consen 157 S-------------------------------------------------CDGKVQIWDLQDGILSKTLTGVDKDNEFIL 187 (933)
T ss_pred e-------------------------------------------------cCceEEEEEcccchhhhhcccCCccccccc
Confidence 2 2345667777 66322 121 11
Q ss_pred -ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 -~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..+..++|+|||..+++...++ .|.+|+.++.+..-...... .......++|||.|
T Consensus 188 s~i~~~~aW~Pk~g~la~~~~d~-------------~Vkvy~r~~we~~f~Lr~~~----------~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 188 SRICTRLAWHPKGGTLAVPPVDN-------------TVKVYSRKGWELQFKLRDKL----------SSSKFSDLQWSPNG 244 (933)
T ss_pred cceeeeeeecCCCCeEEeeccCC-------------eEEEEccCCceeheeecccc----------cccceEEEEEcCCC
Confidence 2345789999977776665333 78888888755322111110 11224568999999
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEe
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (954)
++|+.. .-.++|.+|+. ++ ..+ ......+-..+|-|+...|-+..+
T Consensus 245 ~YiAAs-------------~~~g~I~vWnv---~t--~~~-~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 245 KYIAAS-------------TLDGQILVWNV---DT--HER-HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred cEEeee-------------ccCCcEEEEec---cc--chh-ccccceeEEEecCCCCCeeEEEee
Confidence 988776 44668889986 32 111 223334556778888777766554
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.9e-06 Score=83.56 Aligned_cols=150 Identities=13% Similarity=0.188 Sum_probs=105.9
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
..+++++|||.|++|+..+ |+..+-||.-.+++.+-+...++. ...+-.++||++|.
T Consensus 62 rsVRsvAwsp~g~~La~aS-------------FD~t~~Iw~k~~~efecv~~lEGH----------EnEVK~Vaws~sG~ 118 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASAS-------------FDATVVIWKKEDGEFECVATLEGH----------ENEVKCVAWSASGN 118 (312)
T ss_pred heeeeeeecCCCcEEEEee-------------ccceEEEeecCCCceeEEeeeecc----------ccceeEEEEcCCCC
Confidence 5678999999999999988 445788888777777766665533 24566799999999
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc---eEEeecccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~---~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
.|+-- +....+|+|.+ .++++. ..|..+..++..+.|.|-...|+..+.+++ .++|.-+.
T Consensus 119 ~LATC-------------SRDKSVWiWe~--deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnT--Ik~~~~~~ 181 (312)
T KOG0645|consen 119 YLATC-------------SRDKSVWIWEI--DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNT--IKVYRDED 181 (312)
T ss_pred EEEEe-------------eCCCeEEEEEe--cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCe--EEEEeecC
Confidence 77665 33457899986 244443 455778889999999997766666555544 77887765
Q ss_pred CCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 489 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+++-+..+..+.....+.+ +.|.+.|..|+...
T Consensus 182 -dddW~c~~tl~g~~~TVW~------~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 182 -DDDWECVQTLDGHENTVWS------LAFDNIGSRLVSCS 214 (312)
T ss_pred -CCCeeEEEEecCccceEEE------EEecCCCceEEEec
Confidence 3223444445555545555 78899998887776
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.3e-07 Score=91.01 Aligned_cols=107 Identities=19% Similarity=0.201 Sum_probs=75.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+....|.+||..++-.+- +...|.++|+++|...+|.....++ +..+.|||||.+|+.++.+
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~--------gsssi~iWdpdtg~~~pL~~~glgg----~slLkwSPdgd~lfaAt~d---- 259 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASF--------GSSSIMIWDPDTGQKIPLIPKGLGG----FSLLKWSPDGDVLFAATCD---- 259 (445)
T ss_pred ceeeEEEEcCCCCEEeeccc--------CcceEEEEcCCCCCcccccccCCCc----eeeEEEcCCCCEEEEeccc----
Confidence 37888999999998887543 4678888899999888887444333 7789999999999977211
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeC-CceeEcCCCccccccccCCCCcEEE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD-GTVKEIGPPAVYTSLDPSPDEKYIL 347 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~-G~~~~l~~~~~~~~~~~SpDGk~l~ 347 (954)
+.-.||..+-. -..+.+...+.+....|||+|++|+
T Consensus 260 -------------------------------------------avfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 260 -------------------------------------------AVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred -------------------------------------------ceeeeehhcccceecceeccCCceeeeeecCCCCEEE
Confidence 11123322211 1234444446888999999999999
Q ss_pred EEeecCC
Q 002194 348 ISSIHRP 354 (954)
Q Consensus 348 ~~s~~~~ 354 (954)
|+....+
T Consensus 297 f~~sgsp 303 (445)
T KOG2139|consen 297 FACSGSP 303 (445)
T ss_pred EEEcCCc
Confidence 9986654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-05 Score=86.99 Aligned_cols=332 Identities=12% Similarity=0.105 Sum_probs=182.0
Q ss_pred CCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcc
Q 002194 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (954)
Q Consensus 112 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~ 191 (954)
....+|++|+..|+...+ .++|.+... +. ..++..+ ...
T Consensus 38 ~v~~~S~~G~lfA~~~~~----------------------------------~v~i~~~~~----~~-~~lt~~~--~~~ 76 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQ----------------------------------VVKVFEIAT----LK-VVLCVEL--KKT 76 (566)
T ss_pred eeEEEcCCCcEEEEEcCC----------------------------------eEEEEEccC----Cc-EEEEecc--cee
Confidence 467889999999998874 678877643 22 3444333 257
Q ss_pred cceeecCCCCeEEEEEeeccc-cCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 192 NFVTWSQDGKHLAFSIRIDAE-DSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~-~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
....+||-|..|..-...... ....+..++-+++++++..+--..... .+. ..+.||+|..+.+..
T Consensus 77 ~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~---Q~~-W~~qfs~dEsl~arl--------- 143 (566)
T KOG2315|consen 77 YDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKM---QNG-WVPQFSIDESLAARL--------- 143 (566)
T ss_pred eeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhh---hcC-cccccccchhhhhhh---------
Confidence 788999999877653322211 222334667777777643321111110 000 167888888655533
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeC---CceeEcCCCccccccccCCCCc--E
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD---GTVKEIGPPAVYTSLDPSPDEK--Y 345 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~---G~~~~l~~~~~~~~~~~SpDGk--~ 345 (954)
....++.++++ +....|.. ..+..+.+||-+. .
T Consensus 144 -----------------------------------------v~nev~f~~~~~f~~~~~kl~~-~~i~~f~lSpgp~~~~ 181 (566)
T KOG2315|consen 144 -----------------------------------------VSNEVQFYDLGSFKTIQHKLSV-SGITMLSLSPGPEPPF 181 (566)
T ss_pred -----------------------------------------hcceEEEEecCCccceeeeeec-cceeeEEecCCCCCce
Confidence 12345566652 22333332 4566778888643 3
Q ss_pred EEEEeecCCcccccccCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE-eccCC
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE-TQDGG 423 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~-~~~~~ 423 (954)
||+-.-.. ...+..+.||... .+....+..-. .|. ...-.+.|.+-|..|++.+. .-|..
T Consensus 182 vAvyvPe~--------kGaPa~vri~~~~~~~~~~~~a~ks-------FFk---adkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 182 VAVYVPEK--------KGAPASVRIYKYPEEGQHQPVANKS-------FFK---ADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred EEEEccCC--------CCCCcEEEEeccccccccchhhhcc-------ccc---cceeEEEeccCCceEEEEEEEeecCC
Confidence 44332111 1123355555443 11111111100 000 11135889999998887743 22332
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCC
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 503 (954)
+.++ .+...||+++. +|...+.-....+.+..+.|+|+|+.++....... ..+-++|+.+. .+++...
T Consensus 244 n~SY--YGEq~Lyll~t---~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMP--Akvtifnlr~~-----~v~df~e 311 (566)
T KOG2315|consen 244 NASY--YGEQTLYLLAT---QGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMP--AKVTIFNLRGK-----PVFDFPE 311 (566)
T ss_pred Cccc--cccceEEEEEe---cCceEEEecCCCCCceEEEECCCCCEEEEEEeccc--ceEEEEcCCCC-----EeEeCCC
Confidence 2221 23457899985 43333222345778899999999998776655444 45666777662 3333222
Q ss_pred CCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEec
Q 002194 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583 (954)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~ 583 (954)
+. + + .+-|+|-|+.|++..-+ . - ...+-+||... .+.|......
T Consensus 312 gp-R----N-~~~fnp~g~ii~lAGFG--------------N-L---~G~mEvwDv~n--~K~i~~~~a~---------- 355 (566)
T KOG2315|consen 312 GP-R----N-TAFFNPHGNIILLAGFG--------------N-L---PGDMEVWDVPN--RKLIAKFKAA---------- 355 (566)
T ss_pred CC-c----c-ceEECCCCCEEEEeecC--------------C-C---CCceEEEeccc--hhhccccccC----------
Confidence 21 1 1 16799999998887622 1 1 23488899876 3344443321
Q ss_pred cCCccccccccCCEEEEEEecCC
Q 002194 584 SDQTEGDLYLNQLKILTSKESKT 606 (954)
Q Consensus 584 ~~~~~~~~s~dg~~l~~~~~s~~ 606 (954)
+..-..|+|||.+|+....++.
T Consensus 356 -~tt~~eW~PdGe~flTATTaPR 377 (566)
T KOG2315|consen 356 -NTTVFEWSPDGEYFLTATTAPR 377 (566)
T ss_pred -CceEEEEcCCCcEEEEEecccc
Confidence 1112579999999987777643
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-07 Score=97.91 Aligned_cols=231 Identities=13% Similarity=0.137 Sum_probs=145.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+.++.||.+|..++.++.+ ..|.+||+++ |+. +..+..+.
T Consensus 260 ~Vrd~~~s~~g~~fLS~sfD---------------------------------~~lKlwDtET----G~~--~~~f~~~~ 300 (503)
T KOG0282|consen 260 PVRDASFNNCGTSFLSASFD---------------------------------RFLKLWDTET----GQV--LSRFHLDK 300 (503)
T ss_pred hhhhhhccccCCeeeeeecc---------------------------------eeeeeecccc----ceE--EEEEecCC
Confidence 56788999999998888775 5789999865 442 33344445
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
....+.+.||+..+.++. .....|..+|..+|+..+-....-.. +..+.|-++|++++.++.
T Consensus 301 ~~~cvkf~pd~~n~fl~G--------~sd~ki~~wDiRs~kvvqeYd~hLg~----i~~i~F~~~g~rFissSD------ 362 (503)
T KOG0282|consen 301 VPTCVKFHPDNQNIFLVG--------GSDKKIRQWDIRSGKVVQEYDRHLGA----ILDITFVDEGRRFISSSD------ 362 (503)
T ss_pred CceeeecCCCCCcEEEEe--------cCCCcEEEEeccchHHHHHHHhhhhh----eeeeEEccCCceEeeecc------
Confidence 677889999998887763 23567888898888865443322222 668889999999887621
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCCc--cccccccCCCCcEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPA--VYTSLDPSPDEKYIL 347 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~~--~~~~~~~SpDGk~l~ 347 (954)
+ ..-.||.+...=..+.+.... ....+..+|.|++++
T Consensus 363 ---------------d--------------------------ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~ 401 (503)
T KOG0282|consen 363 ---------------D--------------------------KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFA 401 (503)
T ss_pred ---------------C--------------------------ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeeh
Confidence 1 112244433322333333332 234567899999999
Q ss_pred EEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCcccccc--ccCccceeeccCCCCceEEEEeccCCCc
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV--RKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~--~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
-.+.++ .|.++.+.-.- ++.... .|.++ .+..-.+.|||||+.|++-
T Consensus 402 aQs~dN-------------~i~ifs~~~~~--r~nkkK-------~feGh~vaGys~~v~fSpDG~~l~SG--------- 450 (503)
T KOG0282|consen 402 AQSMDN-------------YIAIFSTVPPF--RLNKKK-------RFEGHSVAGYSCQVDFSPDGRTLCSG--------- 450 (503)
T ss_pred hhccCc-------------eEEEEeccccc--ccCHhh-------hhcceeccCceeeEEEcCCCCeEEee---------
Confidence 888554 56666543110 010000 01111 1223458899999987776
Q ss_pred cccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEe
Q 002194 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (954)
+..+.++.|+- .+......+..++..+..+.|.|-....+.+..
T Consensus 451 ----dsdG~v~~wdw--kt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~ 494 (503)
T KOG0282|consen 451 ----DSDGKVNFWDW--KTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCG 494 (503)
T ss_pred ----cCCccEEEeec--hhhhhhhccccCCcceEEEEecCCCcceeEecc
Confidence 55778999984 233344556667778889999998766555443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-05 Score=91.34 Aligned_cols=224 Identities=9% Similarity=0.048 Sum_probs=116.8
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCC-CCeEEEEEeeccccCCCCceEEEEEECCCCce--e-------
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQD-GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--R------- 232 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPD-G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~--~------- 232 (954)
..|.+|++.. ......+.++ ...+....|+|+ +..|+..+ . ...|.++++..+.. .
T Consensus 54 gvI~L~~~~r---~~~v~~L~gH--~~~V~~lafsP~~~~lLASgS-------~--DgtIrIWDi~t~~~~~~~i~~p~~ 119 (568)
T PTZ00420 54 GAIRLENQMR---KPPVIKLKGH--TSSILDLQFNPCFSEILASGS-------E--DLTIRVWEIPHNDESVKEIKDPQC 119 (568)
T ss_pred eEEEeeecCC---CceEEEEcCC--CCCEEEEEEcCCCCCEEEEEe-------C--CCeEEEEECCCCCccccccccceE
Confidence 3567777522 1122333332 246899999997 66666543 2 34556666654321 1
Q ss_pred ecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccc
Q 002194 233 PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYA 312 (954)
Q Consensus 233 ~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~ 312 (954)
.+..+. ..+..+.|+|++..++++.. .
T Consensus 120 ~L~gH~-----~~V~sVaf~P~g~~iLaSgS------------------------------------------------~ 146 (568)
T PTZ00420 120 ILKGHK-----KKISIIDWNPMNYYIMCSSG------------------------------------------------F 146 (568)
T ss_pred EeecCC-----CcEEEEEECCCCCeEEEEEe------------------------------------------------C
Confidence 111111 22778999999987654410 1
Q ss_pred cceEEEEEe-CCc-eeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCccc
Q 002194 313 TTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAED 389 (954)
Q Consensus 313 ~~~l~~~~~-~G~-~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~ 389 (954)
...|.++|+ ++. ...+.....+.+++|+|||+.|+.++.+ +.+.+||+.+++. ..+..+.....
T Consensus 147 DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D-------------~~IrIwD~Rsg~~i~tl~gH~g~~~ 213 (568)
T PTZ00420 147 DSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVG-------------KHMHIIDPRKQEIASSFHIHDGGKN 213 (568)
T ss_pred CCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecC-------------CEEEEEECCCCcEEEEEecccCCce
Confidence 234666777 554 3334333667899999999999877633 3899999986543 33333221100
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCc--eeeccC-
Q 002194 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG--ISWCDD- 466 (954)
Q Consensus 390 ~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~--~~~spD- 466 (954)
. .......|++|++.|+.. ..++ .....|.+||+ ...+.+......+..... +.|.++
T Consensus 214 --s------~~v~~~~fs~d~~~IlTt--G~d~-------~~~R~VkLWDl--r~~~~pl~~~~ld~~~~~L~p~~D~~t 274 (568)
T PTZ00420 214 --T------KNIWIDGLGGDDNYILST--GFSK-------NNMREMKLWDL--KNTTSALVTMSIDNASAPLIPHYDEST 274 (568)
T ss_pred --e------EEEEeeeEcCCCCEEEEE--EcCC-------CCccEEEEEEC--CCCCCceEEEEecCCccceEEeeeCCC
Confidence 0 000112356888865554 1100 11236899996 222333333233332232 455555
Q ss_pred CceEEEEEeccccceEEEEEc
Q 002194 467 SLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~d 487 (954)
|..++....+. ..++|.+.
T Consensus 275 g~l~lsGkGD~--tIr~~e~~ 293 (568)
T PTZ00420 275 GLIYLIGKGDG--NCRYYQHS 293 (568)
T ss_pred CCEEEEEECCC--eEEEEEcc
Confidence 55554443332 25566554
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.3e-06 Score=94.11 Aligned_cols=266 Identities=12% Similarity=0.087 Sum_probs=164.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+.++.+|.|...++.... ..|.+|+..+ .+ .+..++.+
T Consensus 375 dVRsl~vS~d~~~~~Sga~----------------------------------~SikiWn~~t----~k--ciRTi~~~- 413 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAG----------------------------------ESIKIWNRDT----LK--CIRTITCG- 413 (888)
T ss_pred heeEEEeecCceeeeecCC----------------------------------CcEEEEEccC----cc--eeEEeccc-
Confidence 5678888888866665554 3788998843 22 23223333
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....|-|.++.|+.... +..|-++|+.+......+...++. +.+++-+||++.++..
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k---------~Gel~vfdlaS~~l~Eti~AHdga----IWsi~~~pD~~g~vT~-------- 472 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTK---------NGELQVFDLASASLVETIRAHDGA----IWSISLSPDNKGFVTG-------- 472 (888)
T ss_pred cEEEEEecCCCceEEEecc---------CCceEEEEeehhhhhhhhhccccc----eeeeeecCCCCceEEe--------
Confidence 6777889999998888442 456666677666554444433332 5677788999988866
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe----CCce---------eEcCCCccccc
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL----DGTV---------KEIGPPAVYTS 336 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~----~G~~---------~~l~~~~~~~~ 336 (954)
+++ .+-.+|..-+ .|.. +.|.-...+..
T Consensus 473 -------------saD--------------------------ktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~ 513 (888)
T KOG0306|consen 473 -------------SAD--------------------------KTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLC 513 (888)
T ss_pred -------------cCC--------------------------cEEEEEeEEEEeccCcccceeeeeccceEEeccccEEE
Confidence 222 1112222222 1322 22222256677
Q ss_pred cccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 337 ~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
+.+|||||+|++.-.++ ++.+|-+++=+. -.|..+. ..+..+..|||++.|+-
T Consensus 514 v~~Spdgk~LaVsLLdn-------------TVkVyflDtlKFflsLYGHk-------------LPV~smDIS~DSklivT 567 (888)
T KOG0306|consen 514 VSVSPDGKLLAVSLLDN-------------TVKVYFLDTLKFFLSLYGHK-------------LPVLSMDISPDSKLIVT 567 (888)
T ss_pred EEEcCCCcEEEEEeccC-------------eEEEEEecceeeeeeecccc-------------cceeEEeccCCcCeEEe
Confidence 89999999999987443 677777775332 2333332 33567889999997655
Q ss_pred EEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCc
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP 495 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 495 (954)
- +....|-+|.+ .=|.-.+-+..++..+..+.|.|+ ..++|+...++ .+-.+|.+. .+.
T Consensus 568 g-------------SADKnVKiWGL--dFGDCHKS~fAHdDSvm~V~F~P~-~~~FFt~gKD~---kvKqWDg~k--Fe~ 626 (888)
T KOG0306|consen 568 G-------------SADKNVKIWGL--DFGDCHKSFFAHDDSVMSVQFLPK-THLFFTCGKDG---KVKQWDGEK--FEE 626 (888)
T ss_pred c-------------cCCCceEEecc--ccchhhhhhhcccCceeEEEEccc-ceeEEEecCcc---eEEeechhh--hhh
Confidence 4 33334555554 125556777888888999999995 45677766553 455555444 233
Q ss_pred EEEecCCCCCccCCCCCCCeeeccCCcEEEEEEe
Q 002194 496 RILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (954)
.+..+.+..+++- ++.+|+|.+++..+.
T Consensus 627 iq~L~~H~~ev~c------Lav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 627 IQKLDGHHSEVWC------LAVSPNGSFVVSSSH 654 (888)
T ss_pred heeeccchheeee------eEEcCCCCeEEeccC
Confidence 4445555555554 778999999887763
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00018 Score=79.99 Aligned_cols=156 Identities=19% Similarity=0.197 Sum_probs=97.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+.++++|.+.+.||....+ +.|-+|++..+- -..+.|++ +...
T Consensus 27 ~I~slA~s~kS~~lAvsRt~---------------------------------g~IEiwN~~~~w--~~~~vi~g-~~dr 70 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTD---------------------------------GNIEIWNLSNNW--FLEPVIHG-PEDR 70 (691)
T ss_pred ceEEEEEeccCCceeeeccC---------------------------------CcEEEEccCCCc--eeeEEEec-CCCC
Confidence 45678899999999888765 578899986422 23445554 3334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+...+|++.| +| |... ....|--+|+.+++.+...+..+.. +-+++-.|.++.+++...
T Consensus 71 sIE~L~W~e~~-RL-FS~g--------~sg~i~EwDl~~lk~~~~~d~~gg~----IWsiai~p~~~~l~Igcd------ 130 (691)
T KOG2048|consen 71 SIESLAWAEGG-RL-FSSG--------LSGSITEWDLHTLKQKYNIDSNGGA----IWSIAINPENTILAIGCD------ 130 (691)
T ss_pred ceeeEEEccCC-eE-Eeec--------CCceEEEEecccCceeEEecCCCcc----eeEEEeCCccceEEeecC------
Confidence 78899999655 44 4332 3567888888887765544333321 334444577776665411
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce--eE-cCCC-ccccccccCCCCc
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV--KE-IGPP-AVYTSLDPSPDEK 344 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~--~~-l~~~-~~~~~~~~SpDGk 344 (954)
.+.|+.++. .+.+ .+ +... +.+-+++|+|+|.
T Consensus 131 -------------------------------------------dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~ 167 (691)
T KOG2048|consen 131 -------------------------------------------DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT 167 (691)
T ss_pred -------------------------------------------CceEEEEecCCceEEEEeecccccceEEEEEecCCcc
Confidence 113444444 3322 11 2222 6788899999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCce
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF 377 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~ 377 (954)
+|+..+.+ +-|.+||+..+.
T Consensus 168 ~i~~Gs~D-------------g~Iriwd~~~~~ 187 (691)
T KOG2048|consen 168 KIAGGSID-------------GVIRIWDVKSGQ 187 (691)
T ss_pred EEEecccC-------------ceEEEEEcCCCc
Confidence 99988743 368899998543
|
|
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-06 Score=94.93 Aligned_cols=243 Identities=16% Similarity=0.105 Sum_probs=158.1
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcE
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (954)
-..+.|...+.+.||..+...- .|..- ++.|+|++.||--..+.. .+..+|+ ...+-.|+++||-
T Consensus 44 ~gy~~E~h~V~T~DgYiL~lhR-Ip~~~-----~~rp~Vll~HGLl~sS~~---Wv~n~p~------~sLaf~LadaGYD 108 (403)
T KOG2624|consen 44 YGYPVEEHEVTTEDGYILTLHR-IPRGK-----KKRPVVLLQHGLLASSSS---WVLNGPE------QSLAFLLADAGYD 108 (403)
T ss_pred cCCceEEEEEEccCCeEEEEee-ecCCC-----CCCCcEEEeecccccccc---ceecCcc------ccHHHHHHHcCCc
Confidence 3467899999999998554443 45431 458999999995322221 1111121 2345568899999
Q ss_pred EEEcCCCCCCCCCCcc-----------cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC-
Q 002194 715 ILGGPTTPIIGEGDEE-----------ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH- 782 (954)
Q Consensus 715 V~~~~~~~~~G~G~~~-----------~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~- 782 (954)
|-.++.|| .-|++.. ..-.|.+-...|+-+.++++.+. ...+++..+|||.|+.....++...|+
T Consensus 109 VWLgN~RG-n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~--T~~~kl~yvGHSQGtt~~fv~lS~~p~~ 185 (403)
T KOG2624|consen 109 VWLGNNRG-NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK--TGQEKLHYVGHSQGTTTFFVMLSERPEY 185 (403)
T ss_pred eeeecCcC-cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHh--ccccceEEEEEEccchhheehhcccchh
Confidence 99988876 3344431 11223444678999999999886 355799999999999999999888864
Q ss_pred --cccEEEEeccCCCCCCC---------C---------CCCcc------------------cc-----------------
Q 002194 783 --LFCCGIARSGAYNRTLT---------P---------FGFQN------------------ED----------------- 807 (954)
Q Consensus 783 --~~~a~v~~~~~~~~~~~---------~---------~~~~~------------------~~----------------- 807 (954)
+++..++.+|+.-.... . +.+.. ..
T Consensus 186 ~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G 265 (403)
T KOG2624|consen 186 NKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVG 265 (403)
T ss_pred hhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcC
Confidence 68888888886421100 0 00000 00
Q ss_pred --------------------c--------------------hhhh---cHHHHHh-cCcccccCCCCCCEEEEEeCCCCC
Q 002194 808 --------------------R--------------------TLWE---ATSTYVE-MSPFMSANKLKKPILLVHGEEDNN 843 (954)
Q Consensus 808 --------------------~--------------------~~~~---~~~~~~~-~sp~~~~~~~~~P~Lii~G~~D~~ 843 (954)
+ .-|. +...|.. ..|...+.++++|+.+..|++|..
T Consensus 266 ~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l 345 (403)
T KOG2624|consen 266 WNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWL 345 (403)
T ss_pred cchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCccc
Confidence 0 0000 1111111 135667778899999999999999
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcC--CCcccHHHHHHHHHHHHHHhc
Q 002194 844 SGTLTMQSDRFFNALKGHGALCRLVILPFESHGY--AARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 844 v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~--~~~~~~~~~~~~i~~fl~~~l 898 (954)
+. +++...+...+..... ...+.+++-+|.- ......+.+++.|++.++++.
T Consensus 346 ~~--~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 346 AD--PEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred CC--HHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 98 8888888877766544 3333467778863 234457889999999988764
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.2e-06 Score=89.93 Aligned_cols=242 Identities=13% Similarity=0.146 Sum_probs=148.0
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
.+.++||+|....|.+.. +.+.++++... .+....|. ...
T Consensus 128 ~W~~qfs~dEsl~arlv~----------------------------------nev~f~~~~~f--~~~~~kl~----~~~ 167 (566)
T KOG2315|consen 128 GWVPQFSIDESLAARLVS----------------------------------NEVQFYDLGSF--KTIQHKLS----VSG 167 (566)
T ss_pred Ccccccccchhhhhhhhc----------------------------------ceEEEEecCCc--cceeeeee----ccc
Confidence 468999999988877766 37889888442 24445553 235
Q ss_pred ccceeecCCCC--eEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 191 LNFVTWSQDGK--HLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 191 ~~~~~wSPDG~--~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
++...+||-+. .||+-. ....+.....+||.+.. .+....+.... .+.+.--.+.|.+-|.-|.+..
T Consensus 168 i~~f~lSpgp~~~~vAvyv--Pe~kGaPa~vri~~~~~-~~~~~~~a~ks--FFkadkvqm~WN~~gt~LLvLa------ 236 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYV--PEKKGAPASVRIYKYPE-EGQHQPVANKS--FFKADKVQMKWNKLGTALLVLA------ 236 (566)
T ss_pred eeeEEecCCCCCceEEEEc--cCCCCCCcEEEEecccc-ccccchhhhcc--ccccceeEEEeccCCceEEEEE------
Confidence 78888998654 444432 21122234456666652 22222221110 1111123678999988666551
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCce--eEcCCCccccccccCCCCcEE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTV--KEIGPPAVYTSLDPSPDEKYI 346 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~--~~l~~~~~~~~~~~SpDGk~l 346 (954)
..+-|.....||+...||.++.+|+. ..+...+.+.++.|||+|+-.
T Consensus 237 -------------------------------stdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 237 -------------------------------STDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREF 285 (566)
T ss_pred -------------------------------EEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEE
Confidence 12234445677899999999997654 444445889999999999988
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
++.-.-- +..+-++|+++.-+-.+...+ ...+-|+|.|+.|++. .. |
T Consensus 286 ~VvyGfM-----------PAkvtifnlr~~~v~df~egp---------------RN~~~fnp~g~ii~lA-GF--G---- 332 (566)
T KOG2315|consen 286 AVVYGFM-----------PAKVTIFNLRGKPVFDFPEGP---------------RNTAFFNPHGNIILLA-GF--G---- 332 (566)
T ss_pred EEEEecc-----------cceEEEEcCCCCEeEeCCCCC---------------ccceEECCCCCEEEEe-ec--C----
Confidence 7776332 347888999876544333321 1347799999977775 00 0
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEeeccc-ccCceeeccCCceEEEEEe
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDL-RYGGISWCDDSLALVYESW 475 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~-~~~~~~~spDg~~l~~~~~ 475 (954)
.-.+.+-+||+ .. .+.+..... +.....|||||++++.+..
T Consensus 333 ---NL~G~mEvwDv---~n--~K~i~~~~a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 333 ---NLPGDMEVWDV---PN--RKLIAKFKAANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred ---CCCCceEEEec---cc--hhhccccccCCceEEEEcCCCcEEEEEec
Confidence 12456778886 22 334443332 3345799999999998763
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.5e-05 Score=82.61 Aligned_cols=299 Identities=13% Similarity=0.150 Sum_probs=159.9
Q ss_pred hcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecC
Q 002194 106 VDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF 185 (954)
Q Consensus 106 ~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~ 185 (954)
+..+.+..+.|||.|++|..-+.. ++ ++++. ..+-....+++.+||..+ +. .+..+
T Consensus 69 ~~~~~V~~~~fSP~~kYL~tw~~~---pi--------------~~pe~-e~sp~~~~n~~~vwd~~s----g~--iv~sf 124 (561)
T COG5354 69 FRHPDVKYLDFSPNEKYLVTWSRE---PI--------------IEPEI-EISPFTSKNNVFVWDIAS----GM--IVFSF 124 (561)
T ss_pred eecCCceecccCcccceeeeeccC---Cc--------------cChhh-ccCCccccCceeEEeccC----ce--eEeec
Confidence 445678899999999999877664 11 01111 111111113688999853 22 12112
Q ss_pred CCC--Ccc--cceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcccc-ccccceeEecCC--eEE
Q 002194 186 PDG--AKL--NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN-AIFDNFVWVNNS--TLL 258 (954)
Q Consensus 186 ~~~--~~~--~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~-~~~~~~~wspDG--~~l 258 (954)
..- ... ....||-|.+.+|.+. ...|+++++ ++...+. +-..+. -++..+.|||.| ..|
T Consensus 125 ~~~~q~~~~Wp~~k~s~~D~y~ARvv----------~~sl~i~e~-t~n~~~~---p~~~lr~~gi~dFsisP~~n~~~l 190 (561)
T COG5354 125 NGISQPYLGWPVLKFSIDDKYVARVV----------GSSLYIHEI-TDNIEEH---PFKNLRPVGILDFSISPEGNHDEL 190 (561)
T ss_pred cccCCcccccceeeeeecchhhhhhc----------cCeEEEEec-CCccccC---chhhccccceeeEEecCCCCCceE
Confidence 110 111 2458999999999875 578899886 4433222 111011 126789999864 556
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-cccccc
Q 002194 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSL 337 (954)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-~~~~~~ 337 (954)
+|.++...+. | +.-.||.+..+..+...+-. ..--.+
T Consensus 191 a~~tPEk~~k-------p-----------------------------------a~~~i~sIp~~s~l~tk~lfk~~~~qL 228 (561)
T COG5354 191 AYWTPEKLNK-------P-----------------------------------AMVRILSIPKNSVLVTKNLFKVSGVQL 228 (561)
T ss_pred EEEccccCCC-------C-----------------------------------cEEEEEEccCCCeeeeeeeEeecccEE
Confidence 7664332222 0 22234444432222211111 222356
Q ss_pred ccCCCCcEEEEEeecCCcccccccCCC-CcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002194 338 DPSPDEKYILISSIHRPYSFIVPCGRF-PRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 338 ~~SpDGk~l~~~s~~~~~~~~~~~~~~-~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~ 416 (954)
.|.+.|++|++...+.-.+.. .-| ..+++|+++.+..++...... +-+-++.|+|++++.+..
T Consensus 229 kW~~~g~~ll~l~~t~~ksnK---syfgesnLyl~~~~e~~i~V~~~~~-------------~pVhdf~W~p~S~~F~vi 292 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNK---SYFGESNLYLLRITERSIPVEKDLK-------------DPVHDFTWEPLSSRFAVI 292 (561)
T ss_pred EEecCCceEEEEEEEeeeccc---ceeccceEEEEeecccccceecccc-------------ccceeeeecccCCceeEE
Confidence 799999999887654321110 001 248999998855443322111 224578999999998776
Q ss_pred EEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcE
Q 002194 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (954)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (954)
...++ ..+-.+++ .+. . +....+..-..+.|||.+++|+++.-.+. +..+-+++..+. ..
T Consensus 293 ~g~~p-----------a~~s~~~l---r~N-l-~~~~Pe~~rNT~~fsp~~r~il~agF~nl-~gni~i~~~~~r---f~ 352 (561)
T COG5354 293 SGYMP-----------ASVSVFDL---RGN-L-RFYFPEQKRNTIFFSPHERYILFAGFDNL-QGNIEIFDPAGR---FK 352 (561)
T ss_pred ecccc-----------cceeeccc---ccc-e-EEecCCcccccccccCcccEEEEecCCcc-ccceEEeccCCc---eE
Confidence 32221 12334443 332 2 22233444456789999999999865543 355677777663 23
Q ss_pred EE--ecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 497 IL--FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 497 ~l--~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.+ ++..... ..-|||||.++....
T Consensus 353 ~~~~~~~~n~s--------~~~wspd~qF~~~~~ 378 (561)
T COG5354 353 VAGAFNGLNTS--------YCDWSPDGQFYDTDT 378 (561)
T ss_pred EEEEeecCCce--------EeeccCCceEEEecC
Confidence 33 2222111 145999998765443
|
|
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.5e-06 Score=82.32 Aligned_cols=118 Identities=22% Similarity=0.248 Sum_probs=73.8
Q ss_pred HHHHHHHHHH-cCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcC
Q 002194 743 AEAAVEEVVR-RGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMS 821 (954)
Q Consensus 743 ~~~av~~l~~-~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 821 (954)
+.+-+.-.++ ...++.++.+|+|||+||.+++.++..+|+.|.+.++++|.+- |.+...+....
T Consensus 120 L~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlW---------------w~n~~~l~~~~ 184 (264)
T COG2819 120 LTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLW---------------WHNEAILREIE 184 (264)
T ss_pred HHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhh---------------hCCHHHhcccc
Confidence 3344443333 4668999999999999999999999999999999999998532 23332232222
Q ss_pred cccccCCCCCCEEEEE--eCCCCCCCC----chHHHHHHHHHHHh-CCCcEEEEEeCCCCCcC
Q 002194 822 PFMSANKLKKPILLVH--GEEDNNSGT----LTMQSDRFFNALKG-HGALCRLVILPFESHGY 877 (954)
Q Consensus 822 p~~~~~~~~~P~Lii~--G~~D~~v~~----~~~~~~~~~~~l~~-~g~~~~~~~~~~~~H~~ 877 (954)
-.... + ..+++|.- |+.|.-... ...++.+..+.++. .|....+..+|+.+|.-
T Consensus 185 ~~~~~-~-~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~H~~ 245 (264)
T COG2819 185 SLKLL-K-TKRICLYIGSGELDSSRSIRMAENKQEAAELSSLLEKRTGARLVFQEEPLEHHGS 245 (264)
T ss_pred ccccC-C-CcceEEEecccccCcchhhhhhhHHHHHHHHHHHHhhccCCceEecccccccccc
Confidence 22222 2 33444444 444442210 02334444555555 67788888999888874
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.7e-05 Score=83.17 Aligned_cols=275 Identities=17% Similarity=0.128 Sum_probs=146.0
Q ss_pred hcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecC
Q 002194 106 VDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF 185 (954)
Q Consensus 106 ~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~ 185 (954)
++......+.+||||+.++....- ++-- .|+--..-|-+||..+ +.....|. +
T Consensus 33 i~~g~~~~~~~spdgk~~y~a~T~-------------------~sR~----~rG~RtDvv~~~D~~T---L~~~~EI~-i 85 (342)
T PF06433_consen 33 IDTGFLGNVALSPDGKTIYVAETF-------------------YSRG----TRGERTDVVEIWDTQT---LSPTGEIE-I 85 (342)
T ss_dssp EEEESSEEEEE-TTSSEEEEEEEE-------------------EEET----TEEEEEEEEEEEETTT---TEEEEEEE-E
T ss_pred eecccCCceeECCCCCEEEEEEEE-------------------Eecc----ccccceeEEEEEecCc---CcccceEe-c
Confidence 344456678899999999875441 1111 1111113466777643 11222221 2
Q ss_pred CCC------CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEE
Q 002194 186 PDG------AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (954)
Q Consensus 186 ~~~------~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (954)
|.. ......+.|.|||++++.+-++ ...|-++|++.++...-.+.++- ...+-+.+++ +.
T Consensus 86 P~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP-------a~SVtVVDl~~~kvv~ei~~PGC-----~~iyP~~~~~--F~ 151 (342)
T PF06433_consen 86 PPKPRAQVVPYKNMFALSADGKFLYVQNFTP-------ATSVTVVDLAAKKVVGEIDTPGC-----WLIYPSGNRG--FS 151 (342)
T ss_dssp TTS-B--BS--GGGEEE-TTSSEEEEEEESS-------SEEEEEEETTTTEEEEEEEGTSE-----EEEEEEETTE--EE
T ss_pred CCcchheecccccceEEccCCcEEEEEccCC-------CCeEEEEECCCCceeeeecCCCE-----EEEEecCCCc--eE
Confidence 211 2456678999999999987655 78999999998876554444442 1122222322 11
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--CCceeE----cCCC--
Q 002194 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKE----IGPP-- 331 (954)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~--~G~~~~----l~~~-- 331 (954)
.. .+.+.+..+.+ +|+..+ +...
T Consensus 152 ~l-------------------------------------------------C~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~ 182 (342)
T PF06433_consen 152 ML-------------------------------------------------CGDGSLLTVTLDADGKEAQKSTKVFDPDD 182 (342)
T ss_dssp EE-------------------------------------------------ETTSCEEEEEETSTSSEEEEEEEESSTTT
T ss_pred EE-------------------------------------------------ecCCceEEEEECCCCCEeEeeccccCCCC
Confidence 11 12333445555 454322 1111
Q ss_pred -ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 -~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..+..+.++.++.+++|.+ |.++++-.|+.+...+..............-....+|..-+++.+..
T Consensus 183 dp~f~~~~~~~~~~~~~F~S-------------y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~ 249 (342)
T PF06433_consen 183 DPLFEHPAYSRDGGRLYFVS-------------YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS 249 (342)
T ss_dssp S-B-S--EEETTTTEEEEEB-------------TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT
T ss_pred cccccccceECCCCeEEEEe-------------cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecccc
Confidence 2334666777788888888 45589888988776554433221100001112233455568888877
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+++++.......+.- -++...||++|+ .++...+++ ..+..+.+++.|.|.+-++|+.+..+ ..|+++|..+
T Consensus 250 ~rlyvLMh~g~~gsH---KdpgteVWv~D~--~t~krv~Ri-~l~~~~~Si~Vsqd~~P~L~~~~~~~--~~l~v~D~~t 321 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSH---KDPGTEVWVYDL--KTHKRVARI-PLEHPIDSIAVSQDDKPLLYALSAGD--GTLDVYDAAT 321 (342)
T ss_dssp TEEEEEEEE--TT-T---TS-EEEEEEEET--TTTEEEEEE-EEEEEESEEEEESSSS-EEEEEETTT--TEEEEEETTT
T ss_pred CeEEEEecCCCCCCc---cCCceEEEEEEC--CCCeEEEEE-eCCCccceEEEccCCCcEEEEEcCCC--CeEEEEeCcC
Confidence 777776553321111 133458999996 333233333 22345678999999998888766543 5699999998
Q ss_pred C
Q 002194 491 K 491 (954)
Q Consensus 491 ~ 491 (954)
|
T Consensus 322 G 322 (342)
T PF06433_consen 322 G 322 (342)
T ss_dssp -
T ss_pred C
Confidence 6
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.6e-07 Score=97.14 Aligned_cols=214 Identities=21% Similarity=0.221 Sum_probs=121.2
Q ss_pred eEEEEEEcC-CCeEEEEEEEcCCCCCC-CCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 639 KELIKYQRK-DGVQLSATLYLPPGYDP-SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 639 ~~~~~~~~~-~g~~l~~~l~~P~~~~~-~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
...+++... ++.++...+|+|..... -..+++|+|++.||-.. .. ..| ...+..|++.||+|.
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs-------~~----~~f----~~~A~~lAs~Gf~Va 102 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGS-------YV----TGF----AWLAEHLASYGFVVA 102 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCC-------Cc----cch----hhhHHHHhhCceEEE
Confidence 344555433 46788889999876432 01146999999999410 11 111 245778999999999
Q ss_pred EcCCCCCCCCCCcccc--------hhhHHHHHHHHHHHHHHHHHc---C----CCCCCcEEEEeeChHHHHHHHHHHhCC
Q 002194 717 GGPTTPIIGEGDEEAN--------DRFVEQLVACAEAAVEEVVRR---G----VAHPSKIAVGGHSYGAFMTANLLAHAP 781 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~--------~~~~~~~~~D~~~av~~l~~~---~----~~d~~ri~l~G~S~GG~~a~~~a~~~p 781 (954)
..+.-++. .|+.... ...+-....|+...+++|.+. + .+|+.+|+++|||+||+.++.+++...
T Consensus 103 ~~~hpgs~-~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 103 APDHPGSN-AGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred eccCCCcc-cccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 85554332 2222110 011123457788888888776 4 588999999999999999999987653
Q ss_pred Cc---c-cEE----EEecc-CCCCCCCCCCCccccchhhhcHHHHHhcC----------cc-------cccCCCCCCEEE
Q 002194 782 HL---F-CCG----IARSG-AYNRTLTPFGFQNEDRTLWEATSTYVEMS----------PF-------MSANKLKKPILL 835 (954)
Q Consensus 782 ~~---~-~a~----v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----------p~-------~~~~~~~~P~Li 835 (954)
+. . .|. ++..+ ..+.. ...+....|.....|...+ |. .-+.+++.|+++
T Consensus 182 ~~~~~~~~C~~~~~~~~~~~~~~~~-----~l~q~~av~~~~~~~~~rDpriravvA~~p~~~~~Fg~tgl~~v~~P~~~ 256 (365)
T COG4188 182 DAEALLQHCESASRICLDPPGLNGR-----LLNQCAAVWLPRQAYDLRDPRIRAVVAINPALGMIFGTTGLVKVTDPVLL 256 (365)
T ss_pred cHHHHHHHhhhhhhcccCCCCcChh-----hhccccccccchhhhccccccceeeeeccCCcccccccccceeeecceee
Confidence 31 0 111 11111 00000 0000011111111121111 11 134567899999
Q ss_pred EEeCCCCCCCCchH-HHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 002194 836 VHGEEDNNSGTLTM-QSDRFFNALKGHGALCRLVILPFESHGY 877 (954)
Q Consensus 836 i~G~~D~~v~~~~~-~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (954)
+.|..|...| +. +....+..|. |....+...|++.|.-
T Consensus 257 ~a~s~D~~aP--~~~~~~~~f~~l~--g~~k~~~~vp~a~h~s 295 (365)
T COG4188 257 AAGSADGFAP--PVTEQIRPFGYLP--GALKYLRLVPGATHFS 295 (365)
T ss_pred ecccccccCC--cccccccccccCC--cchhheeecCCCcccc
Confidence 9999999776 33 3344444443 3445677889999964
|
|
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.4e-06 Score=94.12 Aligned_cols=87 Identities=13% Similarity=0.009 Sum_probs=62.0
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH----HHH
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN----LLA 778 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~----~a~ 778 (954)
.+.++|+++||.|+..+- ..-+.+...-.+-.. ++.+.+|++.+++. ...++|.++|+|+||.+++. +++
T Consensus 238 SlVr~lv~qG~~VflIsW---~nP~~~~r~~~ldDY-v~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~aA 311 (560)
T TIGR01839 238 SFVQYCLKNQLQVFIISW---RNPDKAHREWGLSTY-VDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQA 311 (560)
T ss_pred hHHHHHHHcCCeEEEEeC---CCCChhhcCCCHHHH-HHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHHh
Confidence 578899999999999433 232223222222222 35788888888876 34568999999999999997 677
Q ss_pred hCCC-cccEEEEeccCCC
Q 002194 779 HAPH-LFCCGIARSGAYN 795 (954)
Q Consensus 779 ~~p~-~~~a~v~~~~~~~ 795 (954)
++++ +++.++.++...|
T Consensus 312 ~~~~~~V~sltllatplD 329 (560)
T TIGR01839 312 LGQLRKVNSLTYLVSLLD 329 (560)
T ss_pred cCCCCceeeEEeeecccc
Confidence 7775 7999988877665
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.4e-06 Score=99.30 Aligned_cols=190 Identities=19% Similarity=0.258 Sum_probs=119.6
Q ss_pred HHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceee
Q 002194 102 IREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (954)
Q Consensus 102 ~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~ 181 (954)
|.+-+.+ +...+++|-+|+++|+.+.+ ..|.+.++. |+ +..+.
T Consensus 91 iL~Rftl-p~r~~~v~g~g~~iaagsdD---------------------------------~~vK~~~~~-D~--s~~~~ 133 (933)
T KOG1274|consen 91 ILARFTL-PIRDLAVSGSGKMIAAGSDD---------------------------------TAVKLLNLD-DS--SQEKV 133 (933)
T ss_pred eeeeeec-cceEEEEecCCcEEEeecCc---------------------------------eeEEEEecc-cc--chhee
Confidence 4444545 67789999999999999986 577888874 33 44455
Q ss_pred eecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceee-cccC---CCccccccccceeEecCCeE
Q 002194 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP-LFQS---PDIYLNAIFDNFVWVNNSTL 257 (954)
Q Consensus 182 lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~---~~~~~~~~~~~~~wspDG~~ 257 (954)
+.++ .+.+..+.++|.|+.||.... ++.|.+++++.+.... ++.. .+...+.....++|+|+|..
T Consensus 134 lrgh--~apVl~l~~~p~~~fLAvss~---------dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~ 202 (933)
T KOG1274|consen 134 LRGH--DAPVLQLSYDPKGNFLAVSSC---------DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT 202 (933)
T ss_pred eccc--CCceeeeeEcCCCCEEEEEec---------CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe
Confidence 5443 357999999999999998663 5677777887765432 2211 11111223457899999655
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcC-CC--c
Q 002194 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIG-PP--A 332 (954)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~-~~--~ 332 (954)
+++. +. ...+.+++. +.+. ..+. .. .
T Consensus 203 la~~---------------------~~----------------------------d~~Vkvy~r~~we~~f~Lr~~~~ss 233 (933)
T KOG1274|consen 203 LAVP---------------------PV----------------------------DNTVKVYSRKGWELQFKLRDKLSSS 233 (933)
T ss_pred EEee---------------------cc----------------------------CCeEEEEccCCceeheeeccccccc
Confidence 5544 11 112334444 3221 1111 11 3
Q ss_pred cccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002194 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (954)
Q Consensus 333 ~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~ 412 (954)
.+...+|||.|+|||.+..++ .|-|||+++-+. +... ..+..++|-|++..
T Consensus 234 ~~~~~~wsPnG~YiAAs~~~g-------------~I~vWnv~t~~~-----~~~~-----------~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 234 KFSDLQWSPNGKYIAASTLDG-------------QILVWNVDTHER-----HEFK-----------RAVCCEAWKPNANA 284 (933)
T ss_pred ceEEEEEcCCCcEEeeeccCC-------------cEEEEecccchh-----cccc-----------ceeEEEecCCCCCe
Confidence 377889999999999988543 899999986221 1100 12345678888887
Q ss_pred ceEEE
Q 002194 413 TLYWA 417 (954)
Q Consensus 413 i~~~~ 417 (954)
|-+..
T Consensus 285 it~~~ 289 (933)
T KOG1274|consen 285 ITLIT 289 (933)
T ss_pred eEEEe
Confidence 76653
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.2e-05 Score=94.08 Aligned_cols=107 Identities=13% Similarity=0.230 Sum_probs=68.2
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCc--eeeeecCCCC
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ--EIEIQGFPDG 188 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~--~~~lt~~~~~ 188 (954)
.....+||||++|||..+. .++.. .+|++.++.+ +. ...+..
T Consensus 129 l~~~~~Spdg~~la~~~d~----------------------~G~E~------~~l~v~d~~t----g~~l~~~i~~---- 172 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDF----------------------LSRRQ------YGIRFRNLET----GNWYPELLDN---- 172 (686)
T ss_pred EeEEEECCCCCEEEEEecC----------------------CCcEE------EEEEEEECCC----CCCCCccccC----
Confidence 4567899999999999763 22222 3799999853 33 222321
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCC--ceeecccCCCccccccccceeEec-CCeEEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSPDIYLNAIFDNFVWVN-NSTLLVCT 261 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~~~~wsp-DG~~l~~~ 261 (954)
.. ....|++||+.|+|++... ......+||+.++.++ +.+.+....... .....|.+ |++.+++.
T Consensus 173 ~~-~~~~w~~D~~~~~y~~~~~---~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~----~~~~~~~s~d~~~l~i~ 240 (686)
T PRK10115 173 VE-PSFVWANDSWTFYYVRKHP---VTLLPYQVWRHTIGTPASQDELVYEEKDDT----FYVSLHKTTSKHYVVIH 240 (686)
T ss_pred cc-eEEEEeeCCCEEEEEEecC---CCCCCCEEEEEECCCChhHCeEEEeeCCCC----EEEEEEEcCCCCEEEEE
Confidence 12 4589999999999987521 1123479999999988 555565533321 11233444 88887754
|
|
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.1e-07 Score=92.00 Aligned_cols=201 Identities=14% Similarity=0.125 Sum_probs=117.5
Q ss_pred CccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCCCCCCCCcccc-hhhHHHHHHHHHHH
Q 002194 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAN-DRFVEQLVACAEAA 746 (954)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~-~~~~~~~~~D~~~a 746 (954)
+.|.++.+||-. ++...|.. ....|+. .|--|+. .|-+-+|.+..- ........+|+...
T Consensus 51 ~~Pp~i~lHGl~-----------GS~~Nw~s----v~k~Ls~~l~~~v~~---vd~RnHG~Sp~~~~h~~~~ma~dv~~F 112 (315)
T KOG2382|consen 51 RAPPAIILHGLL-----------GSKENWRS----VAKNLSRKLGRDVYA---VDVRNHGSSPKITVHNYEAMAEDVKLF 112 (315)
T ss_pred CCCceEEecccc-----------cCCCCHHH----HHHHhcccccCceEE---EecccCCCCccccccCHHHHHHHHHHH
Confidence 478899999931 11122321 2333333 3445555 344456666432 22356677888888
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHH-HHHHHHHHhCCCcccEEEEec--c-CCCCCC------------CCCC--------
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGA-FMTANLLAHAPHLFCCGIARS--G-AYNRTL------------TPFG-------- 802 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG-~~a~~~a~~~p~~~~a~v~~~--~-~~~~~~------------~~~~-------- 802 (954)
++........ .++.+.|||||| .+++..+...|+++.-+|... | .+.... .+..
T Consensus 113 i~~v~~~~~~--~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rk 190 (315)
T KOG2382|consen 113 IDGVGGSTRL--DPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRK 190 (315)
T ss_pred HHHccccccc--CCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHH
Confidence 7777644333 479999999999 777777778888766555542 3 111000 0000
Q ss_pred ----------------------Cc---cccchhhhc-----HHHHHh---cC---cccccCCCCCCEEEEEeCCCCCCCC
Q 002194 803 ----------------------FQ---NEDRTLWEA-----TSTYVE---MS---PFMSANKLKKPILLVHGEEDNNSGT 846 (954)
Q Consensus 803 ----------------------~~---~~~~~~~~~-----~~~~~~---~s---p~~~~~~~~~P~Lii~G~~D~~v~~ 846 (954)
+. ......|.- .+.+.+ .+ .+.+ .....|+|+++|.++..++
T Consensus 191 e~~~~l~~~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~-~~~~~pvlfi~g~~S~fv~- 268 (315)
T KOG2382|consen 191 EALKSLIEVGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLED-GPYTGPVLFIKGLQSKFVP- 268 (315)
T ss_pred HHHHHHHHHhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccc-cccccceeEEecCCCCCcC-
Confidence 00 000001110 111111 11 1222 4456899999999999998
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
.++-.++...+.. ++++.++++||+.. .++.+.+.+.|.+|+.++
T Consensus 269 -~~~~~~~~~~fp~----~e~~~ld~aGHwVh-~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 269 -DEHYPRMEKIFPN----VEVHELDEAGHWVH-LEKPEEFIESISEFLEEP 313 (315)
T ss_pred -hhHHHHHHHhccc----hheeecccCCceee-cCCHHHHHHHHHHHhccc
Confidence 5555555444333 79999999999985 778899999999988764
|
|
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-07 Score=109.95 Aligned_cols=129 Identities=19% Similarity=0.160 Sum_probs=83.6
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC-CCCCCCcc
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP-IIGEGDEE 730 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~-~~G~G~~~ 730 (954)
|...||.|.....+. ++|++||+|||.|..+..... .......++.++++||..+||- ..|+-...
T Consensus 109 L~LnI~~P~~~~~~~--~lPV~v~ihGG~f~~G~~~~~-----------~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~ 175 (535)
T PF00135_consen 109 LYLNIYTPSNASSNS--KLPVMVWIHGGGFMFGSGSFP-----------PYDGASLAASKDVIVVTINYRLGAFGFLSLG 175 (535)
T ss_dssp -EEEEEEETSSSSTT--SEEEEEEE--STTTSSCTTSG-----------GGHTHHHHHHHTSEEEEE----HHHHH-BSS
T ss_pred HHHhhhhcccccccc--ccceEEEeecccccCCCcccc-----------cccccccccCCCEEEEEeccccccccccccc
Confidence 777899998754432 599999999997655432100 0112345678999999988852 22221110
Q ss_pred cchh-hHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--CCcccEEEEeccC
Q 002194 731 ANDR-FVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGA 793 (954)
Q Consensus 731 ~~~~-~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~ 793 (954)
.... .+...+.|...|++|++++ -.-||++|-|+|+|+||..+..++... ..+|+.+|+.+|.
T Consensus 176 ~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 176 DLDAPSGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp STTSHBSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred ccccCchhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 0111 2456789999999999986 236999999999999999998877653 2689999999984
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.6e-07 Score=99.31 Aligned_cols=128 Identities=22% Similarity=0.206 Sum_probs=86.5
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC-cEEEEcCCC-CCCCCCC-
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG-FAILGGPTT-PIIGEGD- 728 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G-~~V~~~~~~-~~~G~G~- 728 (954)
+...||.|+ .+. .+.|++||+|||.|..+..+... + ....|+++| ++|+..+|+ +-.|+=.
T Consensus 80 L~LNIwaP~--~~a--~~~PVmV~IHGG~y~~Gs~s~~~------y------dgs~La~~g~vVvVSvNYRLG~lGfL~~ 143 (491)
T COG2272 80 LYLNIWAPE--VPA--EKLPVMVYIHGGGYIMGSGSEPL------Y------DGSALAARGDVVVVSVNYRLGALGFLDL 143 (491)
T ss_pred eeEEeeccC--CCC--CCCcEEEEEeccccccCCCcccc------c------ChHHHHhcCCEEEEEeCcccccceeeeh
Confidence 677888897 222 24899999999976655432211 1 144688888 888887775 3333211
Q ss_pred -ccc--chhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--CCcccEEEEeccCCC
Q 002194 729 -EEA--NDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (954)
Q Consensus 729 -~~~--~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~ 795 (954)
+.. ........+.|++.|++|++++ -.-||+.|-|+|.|+||+.++.+++.. ..+|+-+|+.+|...
T Consensus 144 ~~~~~~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 144 SSLDTEDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred hhccccccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 000 0111124578999999999886 346999999999999999999887652 246887888887543
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.3e-06 Score=95.80 Aligned_cols=198 Identities=16% Similarity=0.112 Sum_probs=114.7
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+..++||-++ .|+-.+. ...+-+|++...+.-.++.+.+. +.-++|.|-.+..|.+..
T Consensus 370 ~DILDlSWSKn~-fLLSSSM---------DKTVRLWh~~~~~CL~~F~Hndf-----VTcVaFnPvDDryFiSGS----- 429 (712)
T KOG0283|consen 370 ADILDLSWSKNN-FLLSSSM---------DKTVRLWHPGRKECLKVFSHNDF-----VTCVAFNPVDDRYFISGS----- 429 (712)
T ss_pred hhheecccccCC-eeEeccc---------cccEEeecCCCcceeeEEecCCe-----eEEEEecccCCCcEeecc-----
Confidence 378899999654 6766553 33444456666777777776663 778999987776666511
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l 346 (954)
- | +.-+|| ++ +.++..-+.- ..++.++++|||+..
T Consensus 430 ---------------L-------------------D-------~KvRiW--sI~d~~Vv~W~Dl~~lITAvcy~PdGk~a 466 (712)
T KOG0283|consen 430 ---------------L-------------------D-------GKVRLW--SISDKKVVDWNDLRDLITAVCYSPDGKGA 466 (712)
T ss_pred ---------------c-------------------c-------cceEEe--ecCcCeeEeehhhhhhheeEEeccCCceE
Confidence 0 1 222344 44 3333333332 778999999999999
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceEEE---eccCCCcccCCccccccccCccceeeccCCC-CceEEEEeccC
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE---LCDLPLAEDIPIAFNSVRKGMRSINWRSDKP-STLYWAETQDG 422 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~---l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~-~i~~~~~~~~~ 422 (954)
++.+. .+...+|+..+-+... |....... .....+.++.|.|-.. .+++.
T Consensus 467 vIGt~-------------~G~C~fY~t~~lk~~~~~~I~~~~~Kk-------~~~~rITG~Q~~p~~~~~vLVT------ 520 (712)
T KOG0283|consen 467 VIGTF-------------NGYCRFYDTEGLKLVSDFHIRLHNKKK-------KQGKRITGLQFFPGDPDEVLVT------ 520 (712)
T ss_pred EEEEe-------------ccEEEEEEccCCeEEEeeeEeeccCcc-------ccCceeeeeEecCCCCCeEEEe------
Confidence 99883 3478888887755432 22211110 1112355677776333 35454
Q ss_pred CCccccccCCCeEEEEecCCCCCCCceEEeecccc---cCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLR---YGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~---~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
+...+|.++|. .........++-.. -...+|+.||++|+.++++.. ..||.++
T Consensus 521 -------SnDSrIRI~d~---~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~--VYiW~~~ 576 (712)
T KOG0283|consen 521 -------SNDSRIRIYDG---RDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW--VYIWKND 576 (712)
T ss_pred -------cCCCceEEEec---cchhhhhhhcccccCCcceeeeEccCCCEEEEeecCce--EEEEeCC
Confidence 44567888773 11222111122111 234689999999999984432 4455443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=91.26 Aligned_cols=223 Identities=17% Similarity=0.239 Sum_probs=132.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..+.|.|+|++|+..+ ..|...|| +..+=.-.-+....+. .+..+.||++|.+++..
T Consensus 98 ~V~~v~WtPeGRRLltgs-------~SGEFtLW--Ng~~fnFEtilQaHDs----~Vr~m~ws~~g~wmiSg-------- 156 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGS-------QSGEFTLW--NGTSFNFETILQAHDS----PVRTMKWSHNGTWMISG-------- 156 (464)
T ss_pred ceeeEEEcCCCceeEeec-------ccccEEEe--cCceeeHHHHhhhhcc----cceeEEEccCCCEEEEc--------
Confidence 578899999999999976 34466777 3211011111111221 27789999999998854
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC--ccccccccCCCCcEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP--AVYTSLDPSPDEKYIL 347 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~--~~~~~~~~SpDGk~l~ 347 (954)
++ + +.-.+|..+.+ .++.+... ..++.++|||.....+
T Consensus 157 ---------------D~-----------------g-------G~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~ 196 (464)
T KOG0284|consen 157 ---------------DK-----------------G-------GMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFL 196 (464)
T ss_pred ---------------CC-----------------C-------ceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeE
Confidence 10 0 11112222221 11111111 5678999999776666
Q ss_pred EEeecCCcccccccCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
..+.+ +.|.|||.. .++.+.|..+. ..+.++.|.|....|+..
T Consensus 197 t~SdD-------------g~ikiWdf~~~kee~vL~GHg-------------wdVksvdWHP~kgLiasg---------- 240 (464)
T KOG0284|consen 197 TCSDD-------------GTIKIWDFRMPKEERVLRGHG-------------WDVKSVDWHPTKGLIASG---------- 240 (464)
T ss_pred EecCC-------------CeEEEEeccCCchhheeccCC-------------CCcceeccCCccceeEEc----------
Confidence 66644 389999987 45555564432 345788999977655444
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCc
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDV 506 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~ 506 (954)
+..+.|-+|| |..|...-.|..+...+..+.|+|+|.+|+..+.+.. +.++|+.+- +....+..+..++
T Consensus 241 ---skDnlVKlWD--prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~----~kv~DiR~m--kEl~~~r~Hkkdv 309 (464)
T KOG0284|consen 241 ---SKDNLVKLWD--PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS----CKVFDIRTM--KELFTYRGHKKDV 309 (464)
T ss_pred ---cCCceeEeec--CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce----EEEEehhHh--HHHHHhhcchhhh
Confidence 3344677888 5677777777778888899999999999988865543 444444421 1122233333333
Q ss_pred cCCCCCCCeeeccCCcEEEE
Q 002194 507 YSDPGSPMMRRTSTGTYVIA 526 (954)
Q Consensus 507 ~~~~~~~~~~~spdG~~l~~ 526 (954)
.. +.|+|--.-|+.
T Consensus 310 ~~------~~WhP~~~~lft 323 (464)
T KOG0284|consen 310 TS------LTWHPLNESLFT 323 (464)
T ss_pred ee------ecccccccccee
Confidence 33 567775554443
|
|
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=98.43 E-value=1e-05 Score=79.11 Aligned_cols=206 Identities=16% Similarity=0.185 Sum_probs=110.8
Q ss_pred EEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC
Q 002194 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (954)
+.-.+|.+|..|--+|+.-.+.+ .|+||+.-|.. +-.......+.+|+.+||.|+.++...-
T Consensus 7 i~~~~~~~I~vwet~P~~~~~~~---~~tiliA~Gf~---------------rrmdh~agLA~YL~~NGFhViRyDsl~H 68 (294)
T PF02273_consen 7 IRLEDGRQIRVWETRPKNNEPKR---NNTILIAPGFA---------------RRMDHFAGLAEYLSANGFHVIRYDSLNH 68 (294)
T ss_dssp EEETTTEEEEEEEE---TTS------S-EEEEE-TT----------------GGGGGGHHHHHHHHTTT--EEEE---B-
T ss_pred eEcCCCCEEEEeccCCCCCCccc---CCeEEEecchh---------------HHHHHHHHHHHHHhhCCeEEEecccccc
Confidence 44568999999999998643333 78999888742 1112234577889999999999555433
Q ss_pred CCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC--
Q 002194 724 IGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-- 799 (954)
Q Consensus 724 ~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-- 799 (954)
.| .+.+ .+-.......|+..+++||.+.+. .+++++--|.-|-+|..+++.. + ..-+|...|+.|+..+
T Consensus 69 vG--lSsG~I~eftms~g~~sL~~V~dwl~~~g~---~~~GLIAaSLSaRIAy~Va~~i-~-lsfLitaVGVVnlr~TLe 141 (294)
T PF02273_consen 69 VG--LSSGDINEFTMSIGKASLLTVIDWLATRGI---RRIGLIAASLSARIAYEVAADI-N-LSFLITAVGVVNLRDTLE 141 (294)
T ss_dssp --------------HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTTS----SEEEEES--S-HHHHHH
T ss_pred cc--CCCCChhhcchHHhHHHHHHHHHHHHhcCC---CcchhhhhhhhHHHHHHHhhcc-C-cceEEEEeeeeeHHHHHH
Confidence 44 3433 333455678999999999997763 5799999999999999999865 4 6777777788773221
Q ss_pred ---CC---CCcccc---chhhh----cHHHH------Hhc----CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHH
Q 002194 800 ---PF---GFQNED---RTLWE----ATSTY------VEM----SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (954)
Q Consensus 800 ---~~---~~~~~~---~~~~~----~~~~~------~~~----sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (954)
.+ ..+.+. ....+ ..+.| ..+ |....++++.+|++.+++.+|.-|. ..+..++..
T Consensus 142 ~al~~Dyl~~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~--q~eV~~~~~ 219 (294)
T PF02273_consen 142 KALGYDYLQLPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVK--QSEVEELLD 219 (294)
T ss_dssp HHHSS-GGGS-GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS---HHHHHHHHT
T ss_pred HHhccchhhcchhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCcccc--HHHHHHHHH
Confidence 00 000000 00000 00111 011 3445678889999999999999886 666666655
Q ss_pred HHHhCCCcEEEEEeCCCCCcCC
Q 002194 857 ALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 857 ~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
.+.. ..++++..+|..|.+.
T Consensus 220 ~~~s--~~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 220 NINS--NKCKLYSLPGSSHDLG 239 (294)
T ss_dssp T-TT----EEEEEETT-SS-TT
T ss_pred hcCC--CceeEEEecCccchhh
Confidence 4433 3589999999999984
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.3e-06 Score=83.93 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=92.5
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
..++++.|.+||-.++-.+-.. ..+.|||++++...+|.... .+|...+.|||||.
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gs------------ssi~iWdpdtg~~~pL~~~g------------lgg~slLkwSPdgd 251 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGS------------SSIMIWDPDTGQKIPLIPKG------------LGGFSLLKWSPDGD 251 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCc------------ceEEEEcCCCCCcccccccC------------CCceeeEEEcCCCC
Confidence 5678899999999998877432 27899999987766655211 14556789999999
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
.+... +- .....+|.. ...-...+..-..+.+....|||+|+.|+|+.... ..||.+..++.
T Consensus 252 ~lfaA--t~-----------davfrlw~e--~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs---p~lysl~f~~~ 313 (445)
T KOG2139|consen 252 VLFAA--TC-----------DAVFRLWQE--NQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS---PRLYSLTFDGE 313 (445)
T ss_pred EEEEe--cc-----------cceeeeehh--cccceecceeccCCceeeeeecCCCCEEEEEEcCC---ceEEEEeecCC
Confidence 66544 11 112233421 01111112222344788899999999999987554 46777665543
Q ss_pred CCC---------cEEEecCCCCCcc-C--C-CC-CCCeeeccCCcEEEEEEee
Q 002194 492 DVA---------PRILFDRSSEDVY-S--D-PG-SPMMRRTSTGTYVIAKIKK 530 (954)
Q Consensus 492 ~~~---------~~~l~~~~~~~~~-~--~-~~-~~~~~~spdG~~l~~~~~~ 530 (954)
... ...+.+...-..- + . .+ ...++|.|-|.+|+...++
T Consensus 314 ~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 314 DSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred CccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 211 1111111110000 0 0 01 1238999999999988754
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00026 Score=80.52 Aligned_cols=352 Identities=14% Similarity=0.085 Sum_probs=171.3
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
+.+.+||++. .+..-++.-.+.+.+....+-| |+-|++++. .+....+|+.|...|.+|.|-...+ .
T Consensus 267 G~m~~wDLe~----kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~------~DnSlk~~vfD~~dg~pR~LR~R~G--H 333 (910)
T KOG1539|consen 267 GDMAFWDLEK----KKLINVTRNAHYGSVTGATFLP-GEPVLVTAG------ADNSLKVWVFDSGDGVPRLLRSRGG--H 333 (910)
T ss_pred ceEEEEEcCC----CeeeeeeeccccCCcccceecC-CCceEeecc------CCCceeEEEeeCCCCcchheeeccC--C
Confidence 3688999943 2222121111222466667776 777888653 4567889999977777777754322 1
Q ss_pred cccccceeEe-cCCeEEEEEecCCCCCC-C---CCCCCCCCC--------c--eeeccCC--ceeeechhhhhccCcccc
Q 002194 243 NAIFDNFVWV-NNSTLLVCTIPLLRGDP-P---KKPLVPLGP--------K--MQSNEKR--DIIQVRTFQDLLKDEYDE 305 (954)
Q Consensus 243 ~~~~~~~~ws-pDG~~l~~~~~~~~~~~-~---~~~~~~~~~--------~--~~~~~~~--~~~~~r~~~d~l~~~~d~ 305 (954)
.+...-+.+- -.|..|..+..+..-.. . ..-.+.+|. + ..+.+.. ..+..=.....-...++.
T Consensus 334 s~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~N 413 (910)
T KOG1539|consen 334 SAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDN 413 (910)
T ss_pred CCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcc
Confidence 2223344454 45555554422211000 0 000000000 0 0000000 000000000000111222
Q ss_pred ccccccccceEEEEEe-C---CceeEcCC----C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc
Q 002194 306 DLFDYYATTQLVLVSL-D---GTVKEIGP----P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI 376 (954)
Q Consensus 306 ~~~~~~~~~~l~~~~~-~---G~~~~l~~----~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~ 376 (954)
-...+.+...++.++. . |+-..-+. . .....++.|+-|...+..... +.|.++++..+
T Consensus 414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~-------------G~Id~fNmQSG 480 (910)
T KOG1539|consen 414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK-------------GTIDRFNMQSG 480 (910)
T ss_pred eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC-------------CeEEEEEcccC
Confidence 2223335566777776 3 33222222 2 556788899999887776533 37888888866
Q ss_pred eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec--
Q 002194 377 FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-- 454 (954)
Q Consensus 377 ~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-- 454 (954)
..+.-........ ..+++ .+-|+..-... ..+..+.+-.|+. .++. .+...
T Consensus 481 i~r~sf~~~~ah~---------~~V~g--la~D~~n~~~v-----------sa~~~Gilkfw~f---~~k~--l~~~l~l 533 (910)
T KOG1539|consen 481 IHRKSFGDSPAHK---------GEVTG--LAVDGTNRLLV-----------SAGADGILKFWDF---KKKV--LKKSLRL 533 (910)
T ss_pred eeecccccCcccc---------CceeE--EEecCCCceEE-----------EccCcceEEEEec---CCcc--eeeeecc
Confidence 5433221000000 11112 23334321111 1134557777775 3332 22211
Q ss_pred ccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCC
Q 002194 455 DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDE 534 (954)
Q Consensus 455 ~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~ 534 (954)
...+..+..+.....++.+..+ ..|.++|..+. .....+.++...+.. +.|||||+||+...++.
T Consensus 534 ~~~~~~iv~hr~s~l~a~~~dd----f~I~vvD~~t~--kvvR~f~gh~nritd------~~FS~DgrWlisasmD~--- 598 (910)
T KOG1539|consen 534 GSSITGIVYHRVSDLLAIALDD----FSIRVVDVVTR--KVVREFWGHGNRITD------MTFSPDGRWLISASMDS--- 598 (910)
T ss_pred CCCcceeeeeehhhhhhhhcCc----eeEEEEEchhh--hhhHHhhccccceee------eEeCCCCcEEEEeecCC---
Confidence 1222334444444444443222 45788887763 223333334333333 78999999999988432
Q ss_pred CcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEE
Q 002194 535 GTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQ 614 (954)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~ 614 (954)
.|.+||+-++.......-+.. -...+|||.|.+++.++.+. ..||+|
T Consensus 599 ------------------tIr~wDlpt~~lID~~~vd~~------------~~sls~SPngD~LAT~Hvd~---~gIylW 645 (910)
T KOG1539|consen 599 ------------------TIRTWDLPTGTLIDGLLVDSP------------CTSLSFSPNGDFLATVHVDQ---NGIYLW 645 (910)
T ss_pred ------------------cEEEEeccCcceeeeEecCCc------------ceeeEECCCCCEEEEEEecC---ceEEEE
Confidence 399999998875543332211 12357999999999887763 357777
Q ss_pred E
Q 002194 615 S 615 (954)
Q Consensus 615 ~ 615 (954)
.
T Consensus 646 s 646 (910)
T KOG1539|consen 646 S 646 (910)
T ss_pred E
Confidence 5
|
|
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-05 Score=86.60 Aligned_cols=202 Identities=16% Similarity=0.084 Sum_probs=113.0
Q ss_pred EEEEEc-CCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCccc
Q 002194 653 SATLYL-PPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA 731 (954)
Q Consensus 653 ~~~l~~-P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~ 731 (954)
..|++. |..+.++. -|+|||+|||.+.......|+.. ...... +.. ..+++..+|--. . +..
T Consensus 107 s~Wlvk~P~~~~pk~---DpVlIYlHGGGY~l~~~p~qi~~--------L~~i~~-~l~-~~SILvLDYsLt-~---~~~ 169 (374)
T PF10340_consen 107 SYWLVKAPNRFKPKS---DPVLIYLHGGGYFLGTTPSQIEF--------LLNIYK-LLP-EVSILVLDYSLT-S---SDE 169 (374)
T ss_pred eEEEEeCCcccCCCC---CcEEEEEcCCeeEecCCHHHHHH--------HHHHHH-HcC-CCeEEEEecccc-c---ccc
Confidence 357787 77665544 49999999996543322222210 001111 112 446666555211 1 000
Q ss_pred chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC-----CcccEEEEeccCCCCCCCC---CCC
Q 002194 732 NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP-----HLFCCGIARSGAYNRTLTP---FGF 803 (954)
Q Consensus 732 ~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p-----~~~~a~v~~~~~~~~~~~~---~~~ 803 (954)
...-++.-+.++.+..++|.+.. ..+.|.++|-|+||.+++.++..-. ..-+.+|+++|..+..... -.+
T Consensus 170 ~~~~yPtQL~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~ 247 (374)
T PF10340_consen 170 HGHKYPTQLRQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSS 247 (374)
T ss_pred CCCcCchHHHHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCcc
Confidence 12224556678889999999442 2368999999999999998875321 1247899999987755211 000
Q ss_pred c--cccch--hhh----cHHHHHh---------cCcccccCC-----------CCCCEEEEEeCCCCCCCCchHHHHHHH
Q 002194 804 Q--NEDRT--LWE----ATSTYVE---------MSPFMSANK-----------LKKPILLVHGEEDNNSGTLTMQSDRFF 855 (954)
Q Consensus 804 ~--~~~~~--~~~----~~~~~~~---------~sp~~~~~~-----------~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (954)
. +.... .+. -.+.|.. ..|+.+... -+.-++|+.|+++-. .++..++.
T Consensus 248 ~~~n~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Evf----rddI~~~~ 323 (374)
T PF10340_consen 248 YHDNEKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVF----RDDILEWA 323 (374)
T ss_pred ccccccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCcccc----HHHHHHHH
Confidence 0 00000 000 0011111 111111111 124799999997733 78899999
Q ss_pred HHHHhCCC-----cEEEEEeCCCCCcC
Q 002194 856 NALKGHGA-----LCRLVILPFESHGY 877 (954)
Q Consensus 856 ~~l~~~g~-----~~~~~~~~~~~H~~ 877 (954)
+.+...+. ..+..+.+++.|.-
T Consensus 324 ~~~~~~~~~~~~~~~nv~~~~~G~Hi~ 350 (374)
T PF10340_consen 324 KKLNDVKPNKFSNSNNVYIDEGGIHIG 350 (374)
T ss_pred HHHhhcCccccCCcceEEEecCCcccc
Confidence 99986543 36777788888864
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=7e-06 Score=86.06 Aligned_cols=196 Identities=15% Similarity=0.152 Sum_probs=115.9
Q ss_pred hhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCce
Q 002194 100 PEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE 179 (954)
Q Consensus 100 ~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~ 179 (954)
..+..+.+......++|++||..|+....+ +.+++|+.+.. .
T Consensus 136 ~v~~~l~~~g~~k~vaf~~~gs~latgg~d---------------------------------g~lRv~~~Ps~-----~ 177 (398)
T KOG0771|consen 136 NVYQKLVDFGQQKVVAFNGDGSKLATGGTD---------------------------------GTLRVWEWPSM-----L 177 (398)
T ss_pred hHhHHHhhcCcceEEEEcCCCCEeeecccc---------------------------------ceEEEEecCcc-----h
Confidence 334455555455678999999999887665 57888887431 1
Q ss_pred eeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc-eeecccCCCccccccccceeEecCC---
Q 002194 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPLFQSPDIYLNAIFDNFVWVNNS--- 255 (954)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~wspDG--- 255 (954)
+.+....+...+....|||||+.|+++.. ....+|++++|. ...+|+..... .+..+.|+-|+
T Consensus 178 t~l~e~~~~~eV~DL~FS~dgk~lasig~----------d~~~VW~~~~g~~~a~~t~~~k~~---~~~~cRF~~d~~~~ 244 (398)
T KOG0771|consen 178 TILEEIAHHAEVKDLDFSPDGKFLASIGA----------DSARVWSVNTGAALARKTPFSKDE---MFSSCRFSVDNAQE 244 (398)
T ss_pred hhhhhHhhcCccccceeCCCCcEEEEecC----------CceEEEEeccCchhhhcCCcccch---hhhhceecccCCCc
Confidence 12221223457889999999999999752 244555666663 34455433332 26789999777
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC----ceeEcCC
Q 002194 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG----TVKEIGP 330 (954)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G----~~~~l~~ 330 (954)
.+.+++.. ..+ +...++.+.+ .+ ..++...
T Consensus 245 ~l~laa~~-~~~--------------------------------------------~~v~~~~~~~w~~~~~l~~~~~~~ 279 (398)
T KOG0771|consen 245 TLRLAASQ-FPG--------------------------------------------GGVRLCDISLWSGSNFLRLRKKIK 279 (398)
T ss_pred eEEEEEec-CCC--------------------------------------------CceeEEEeeeeccccccchhhhhh
Confidence 33333310 000 1111223333 33 3333333
Q ss_pred C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccC
Q 002194 331 P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (954)
Q Consensus 331 ~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD 409 (954)
. ..+++++.|+|||+++..++++ .+-+++...=+.-.+... .+..-+..+.|+||
T Consensus 280 ~~~siSsl~VS~dGkf~AlGT~dG-------------sVai~~~~~lq~~~~vk~-----------aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 280 RFKSISSLAVSDDGKFLALGTMDG-------------SVAIYDAKSLQRLQYVKE-----------AHLGFVTGLTFSPD 335 (398)
T ss_pred ccCcceeEEEcCCCcEEEEeccCC-------------cEEEEEeceeeeeEeehh-----------hheeeeeeEEEcCC
Confidence 3 6789999999999999998654 666777654332222221 11123467899999
Q ss_pred CCCceE
Q 002194 410 KPSTLY 415 (954)
Q Consensus 410 g~~i~~ 415 (954)
.+.++-
T Consensus 336 sr~~~s 341 (398)
T KOG0771|consen 336 SRYLAS 341 (398)
T ss_pred cCcccc
Confidence 986554
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.4e-06 Score=87.75 Aligned_cols=131 Identities=15% Similarity=0.108 Sum_probs=87.4
Q ss_pred eEEEEEe-CCceeE-cCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCc
Q 002194 315 QLVLVSL-DGTVKE-IGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392 (954)
Q Consensus 315 ~l~~~~~-~G~~~~-l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~ 392 (954)
.|-.+|. ++..++ +..++.+++++.|+||..|+..+.++ .+-+.|+.+.+++....-+....
T Consensus 323 kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd-------------tl~viDlRt~eI~~~~sA~g~k~--- 386 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD-------------TLKVIDLRTKEIRQTFSAEGFKC--- 386 (459)
T ss_pred ceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC-------------ceeeeecccccEEEEeecccccc---
Confidence 3666676 554333 33448899999999999998876332 78889999888876655332211
Q ss_pred cccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCce-EEeec--ccccCceeeccCCce
Q 002194 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKL--DLRYGGISWCDDSLA 469 (954)
Q Consensus 393 ~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~-~l~~~--~~~~~~~~~spDg~~ 469 (954)
........|||||.+++.- +..+.||+|++ .+++.. ++... ...+..++|+|-|+.
T Consensus 387 -----asDwtrvvfSpd~~YvaAG-------------S~dgsv~iW~v---~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 387 -----ASDWTRVVFSPDGSYVAAG-------------SADGSVYIWSV---FTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred -----ccccceeEECCCCceeeec-------------cCCCcEEEEEc---cCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 0123468899999966554 45678999997 555554 44222 224788999999999
Q ss_pred EEEEEeccccceEEE
Q 002194 470 LVYESWYKTRRTRTW 484 (954)
Q Consensus 470 l~~~~~~~~~~~~l~ 484 (954)
++.+..... ..||
T Consensus 446 Llsadk~~~--v~lW 458 (459)
T KOG0288|consen 446 LLSADKQKA--VTLW 458 (459)
T ss_pred hhcccCCcc--eEec
Confidence 988765432 5565
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-05 Score=90.22 Aligned_cols=163 Identities=15% Similarity=0.162 Sum_probs=92.0
Q ss_pred ceEEEEEeCCceeEcCCCccccccccCC-CCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCc
Q 002194 314 TQLVLVSLDGTVKEIGPPAVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392 (954)
Q Consensus 314 ~~l~~~~~~G~~~~l~~~~~~~~~~~Sp-DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~ 392 (954)
.+||.+.-+.-+..+.....++.++|.| |.++++-.+. ++++.||.+...++...+...
T Consensus 392 VRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSL-------------D~KvRiWsI~d~~Vv~W~Dl~------- 451 (712)
T KOG0283|consen 392 VRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSL-------------DGKVRLWSISDKKVVDWNDLR------- 451 (712)
T ss_pred EEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccc-------------ccceEEeecCcCeeEeehhhh-------
Confidence 3344433233344445558889999999 7777776663 459999999887766555433
Q ss_pred cccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCce---EE--ee----cccccCceee
Q 002194 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE---IL--HK----LDLRYGGISW 463 (954)
Q Consensus 393 ~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~---~l--~~----~~~~~~~~~~ 463 (954)
.-+.++.|+|||+..++- .-.+..+.|+. .+.+.. .+ .. ....+.++.|
T Consensus 452 ------~lITAvcy~PdGk~avIG-------------t~~G~C~fY~t---~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~ 509 (712)
T KOG0283|consen 452 ------DLITAVCYSPDGKGAVIG-------------TFNGYCRFYDT---EGLKLVSDFHIRLHNKKKKQGKRITGLQF 509 (712)
T ss_pred ------hhheeEEeccCCceEEEE-------------EeccEEEEEEc---cCCeEEEeeeEeeccCccccCceeeeeEe
Confidence 334678999999976654 12334444442 222111 11 10 0125677777
Q ss_pred ccCC-ceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 464 CDDS-LALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 464 spDg-~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.|.. ..|+.++++ .+|.++|.... +....+.+.... ...-.-+|+.||++|+...
T Consensus 510 ~p~~~~~vLVTSnD----SrIRI~d~~~~--~lv~KfKG~~n~----~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 510 FPGDPDEVLVTSND----SRIRIYDGRDK--DLVHKFKGFRNT----SSQISASFSSDGKHIVSAS 565 (712)
T ss_pred cCCCCCeEEEecCC----CceEEEeccch--hhhhhhcccccC----CcceeeeEccCCCEEEEee
Confidence 7643 345555544 45677776442 222222221111 0111257899999999987
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.1e-05 Score=75.04 Aligned_cols=260 Identities=16% Similarity=0.079 Sum_probs=143.2
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
......||+-|..||..- .++.|.++|..+-..-++....-.. +.+++||+||+.|+.++.
T Consensus 25 ~a~~~~Fs~~G~~lAvGc---------~nG~vvI~D~~T~~iar~lsaH~~p----i~sl~WS~dgr~LltsS~------ 85 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGC---------ANGRVVIYDFDTFRIARMLSAHVRP----ITSLCWSRDGRKLLTSSR------ 85 (405)
T ss_pred ccceEEeccCcceeeeec---------cCCcEEEEEccccchhhhhhccccc----eeEEEecCCCCEeeeecC------
Confidence 356789999999999844 2456666676664443333322222 779999999999997611
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCCccccccccCCCCcEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYIL 347 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~~~~~~~~~SpDGk~l~ 347 (954)
...+-.+|+ .|. .+++.-+..+....|.|-.+..+
T Consensus 86 -------------------------------------------D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~ 122 (405)
T KOG1273|consen 86 -------------------------------------------DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKC 122 (405)
T ss_pred -------------------------------------------CceeEEEeccCCCceeEEEccCccceeeeccccCCeE
Confidence 123556787 774 45554446677788888554444
Q ss_pred EEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
+...-+. .-++.++.....+.|...+..+. + ...+...|.+-|+.|+.-
T Consensus 123 va~~~~~------------sp~vi~~s~~~h~~Lp~d~d~dl-----n---~sas~~~fdr~g~yIitG----------- 171 (405)
T KOG1273|consen 123 VATIMEE------------SPVVIDFSDPKHSVLPKDDDGDL-----N---SSASHGVFDRRGKYIITG----------- 171 (405)
T ss_pred EEEEecC------------CcEEEEecCCceeeccCCCcccc-----c---cccccccccCCCCEEEEe-----------
Confidence 4332111 23344554433333333221110 0 001112477778866554
Q ss_pred cccCCCeEEEEecCCCCCCCc---eEEeecccccCceeeccCCceEEEEEeccccceEEEEEc-C--CCCCCCcEEEecC
Q 002194 428 EVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS-P--GSKDVAPRILFDR 501 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~---~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d-~--~~~~~~~~~l~~~ 501 (954)
...+.+.++++ .+-+. -+++. -..+.++-++-.|+.|++...+.. .|.|-+. + .+.++++... .
T Consensus 172 --tsKGkllv~~a---~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRv--IR~ye~~di~~~~r~~e~e~~--~ 241 (405)
T KOG1273|consen 172 --TSKGKLLVYDA---ETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRV--IRTYEISDIDDEGRDGEVEPE--H 241 (405)
T ss_pred --cCcceEEEEec---chheeeeeeeech-heeeeEEEEeccCcEEEEecCCce--EEEEehhhhcccCccCCcChh--H
Confidence 34567888885 32222 11121 235677889999999988765443 4444432 1 1111222211 0
Q ss_pred CCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCc
Q 002194 502 SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (954)
Q Consensus 502 ~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 572 (954)
...++-....-...-||.||.++..... ..-.||+|....|...++..+..
T Consensus 242 K~qDvVNk~~Wk~ccfs~dgeYv~a~s~--------------------~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 242 KLQDVVNKLQWKKCCFSGDGEYVCAGSA--------------------RAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred HHHHHHhhhhhhheeecCCccEEEeccc--------------------cceeEEEEecCCcceeeeecCCc
Confidence 1111111000011567889998877652 23359999999999888877664
|
|
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.5e-06 Score=92.49 Aligned_cols=78 Identities=23% Similarity=0.399 Sum_probs=63.4
Q ss_pred HHhcCcccccCCCC-CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCccc--HHHHHHHHHHH
Q 002194 817 YVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES--IMHVLWETDRW 893 (954)
Q Consensus 817 ~~~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~f 893 (954)
+...++...+.++. +|+|++||..|..|| ..++..++.+.+.. +.+..++++++|....... ....+..+.+|
T Consensus 218 ~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp--~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f 293 (299)
T COG1073 218 LLLLDPFDDAEKISPRPVLLVHGERDEVVP--LRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEF 293 (299)
T ss_pred hccCcchhhHhhcCCcceEEEecCCCcccc--hhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHH
Confidence 55566777777777 699999999999999 99999999998875 5788889999998864232 24788899999
Q ss_pred HHHhc
Q 002194 894 LQKYC 898 (954)
Q Consensus 894 l~~~l 898 (954)
|.+++
T Consensus 294 ~~~~l 298 (299)
T COG1073 294 LERHL 298 (299)
T ss_pred HHHhc
Confidence 99875
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.8e-06 Score=81.32 Aligned_cols=221 Identities=18% Similarity=0.162 Sum_probs=127.0
Q ss_pred EEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCC
Q 002194 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (954)
Q Consensus 642 ~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~ 721 (954)
..++-.||..+.+..| |.. + +.+-.+++-|++. ....++..++...+.+||.|+. +
T Consensus 8 ~~l~~~DG~~l~~~~~-pA~---~---~~~g~~~va~a~G--------------v~~~fYRrfA~~a~~~Gf~Vlt---~ 63 (281)
T COG4757 8 AHLPAPDGYSLPGQRF-PAD---G---KASGRLVVAGATG--------------VGQYFYRRFAAAAAKAGFEVLT---F 63 (281)
T ss_pred cccccCCCccCccccc-cCC---C---CCCCcEEecccCC--------------cchhHhHHHHHHhhccCceEEE---E
Confidence 5577789999999987 432 1 1332333333310 1112234567777889999999 4
Q ss_pred CCCCCCCcccc------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEE-EEeccC-
Q 002194 722 PIIGEGDEEAN------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG-IARSGA- 793 (954)
Q Consensus 722 ~~~G~G~~~~~------~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~-v~~~~~- 793 (954)
+++|.|++... -.+..-...|+.++++++.+.. ...+...+|||+||.+...+. +++ ++.+. |..++.
T Consensus 64 dyRG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~-~~~-k~~a~~vfG~gag 139 (281)
T COG4757 64 DYRGIGQSRPASLSGSQWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLG-QHP-KYAAFAVFGSGAG 139 (281)
T ss_pred ecccccCCCccccccCccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeecccc-cCc-ccceeeEeccccc
Confidence 55565655331 3445667899999999998853 224689999999998766544 443 33332 222211
Q ss_pred -CCC---------------CCCCCCCccc-------------cchh------hhcHHHHHhcCcc-----cccCCCCCCE
Q 002194 794 -YNR---------------TLTPFGFQNE-------------DRTL------WEATSTYVEMSPF-----MSANKLKKPI 833 (954)
Q Consensus 794 -~~~---------------~~~~~~~~~~-------------~~~~------~~~~~~~~~~sp~-----~~~~~~~~P~ 833 (954)
..+ ......+... -.+. |.....|.-.+|- ...+++.+|+
T Consensus 140 wsg~m~~~~~l~~~~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi 219 (281)
T COG4757 140 WSGWMGLRERLGAVLLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPI 219 (281)
T ss_pred cccchhhhhcccceeeccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCce
Confidence 110 0000000000 0011 1111111111221 1235678999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC----CCcCCCcccHHHHHHHHHHHH
Q 002194 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE----SHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 834 Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~----~H~~~~~~~~~~~~~~i~~fl 894 (954)
+.+...+|+-+| +.....+...... .+.++..++.+ ||.-...+..+...+++++||
T Consensus 220 ~~~~~~DD~w~P--~As~d~f~~~y~n--Apl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 220 TFSRALDDPWAP--PASRDAFASFYRN--APLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred eeeccCCCCcCC--HHHHHHHHHhhhc--CcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 999999999998 7766666666554 46677777754 887544554577788888886
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00035 Score=72.70 Aligned_cols=225 Identities=16% Similarity=0.128 Sum_probs=127.2
Q ss_pred cccceeecC-CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCC-ccccccccceeEecCCeEEEEEecCCCC
Q 002194 190 KLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD-IYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~-~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
....+..+| ++.-++|.++ + ..-++++|..+|+..+....+. ..+ ..-..||+||++||.+
T Consensus 6 RgH~~a~~p~~~~avafaRR-P-------G~~~~v~D~~~g~~~~~~~a~~gRHF---yGHg~fs~dG~~LytT------ 68 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARR-P-------GTFALVFDCRTGQLLQRLWAPPGRHF---YGHGVFSPDGRLLYTT------ 68 (305)
T ss_pred cccceeeCCCCCeEEEEEeC-C-------CcEEEEEEcCCCceeeEEcCCCCCEE---ecCEEEcCCCCEEEEe------
Confidence 345678899 5666666653 2 5678899999988765544443 333 3467899999999977
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcC---CC-ccccccccCCCC
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIG---PP-AVYTSLDPSPDE 343 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~---~~-~~~~~~~~SpDG 343 (954)
+++ .+ .+.+.|-++|.....+++. .. -..-.+.+.|||
T Consensus 69 ---------------End-----------------~~------~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG 110 (305)
T PF07433_consen 69 ---------------END-----------------YE------TGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG 110 (305)
T ss_pred ---------------ccc-----------------cC------CCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC
Confidence 111 00 0456677888843333333 22 233467899999
Q ss_pred cEEEEEeecC---Ccc--cccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEE
Q 002194 344 KYILISSIHR---PYS--FIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (954)
Q Consensus 344 k~l~~~s~~~---~~~--~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~ 417 (954)
+.|++....- ++. ..+........+.+.|..++++ .+..-.+. -.....|.+++.+||. +++..
T Consensus 111 ~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~---------~~~lSiRHLa~~~~G~-V~~a~ 180 (305)
T PF07433_consen 111 ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD---------LHQLSIRHLAVDGDGT-VAFAM 180 (305)
T ss_pred CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc---------ccccceeeEEecCCCc-EEEEE
Confidence 9998875321 111 1111122233566666555443 33221110 1123468899999986 33332
Q ss_pred EeccCCCccccccCCCeEEEEecCCCCCCCceEEee-------cccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-------LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-------~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
.. .+... ...-.|.+.. .++..+.+.. ....+.++++++||+.|+.++...+ .+.++|..+
T Consensus 181 Q~--qg~~~---~~~PLva~~~----~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg---~~~~~d~~t 248 (305)
T PF07433_consen 181 QY--QGDPG---DAPPLVALHR----RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG---RVAVWDAAT 248 (305)
T ss_pred ec--CCCCC---ccCCeEEEEc----CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC---EEEEEECCC
Confidence 22 22110 1122455554 2333443322 2345678999999999999887764 456667777
Q ss_pred C
Q 002194 491 K 491 (954)
Q Consensus 491 ~ 491 (954)
+
T Consensus 249 g 249 (305)
T PF07433_consen 249 G 249 (305)
T ss_pred C
Confidence 5
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00022 Score=74.93 Aligned_cols=144 Identities=17% Similarity=0.204 Sum_probs=84.5
Q ss_pred cceEEEEEe-CCceeEcCCCccccccccC-CCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccC
Q 002194 313 TTQLVLVSL-DGTVKEIGPPAVYTSLDPS-PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (954)
Q Consensus 313 ~~~l~~~~~-~G~~~~l~~~~~~~~~~~S-pDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~ 390 (954)
..+|++++. ++..+.+..+. ..+..+. +||+.++... . .+.++|.++++.+.+...+... .
T Consensus 21 ~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~-~--------------~~~~~d~~~g~~~~~~~~~~~~-~ 83 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADS-G--------------GIAVVDPDTGKVTVLADLPDGG-V 83 (246)
T ss_dssp TTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEET-T--------------CEEEEETTTTEEEEEEEEETTC-S
T ss_pred CCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEc-C--------------ceEEEecCCCcEEEEeeccCCC-c
Confidence 356999999 66555444433 4455666 6765544432 1 5566788888877776642110 0
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceE
Q 002194 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (954)
Q Consensus 391 p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l 470 (954)
.......+++.|||+ +++. +........ ...+.||.++. + ++.+.+...-...++++|+|||+.|
T Consensus 84 ------~~~~~ND~~vd~~G~-ly~t-~~~~~~~~~---~~~g~v~~~~~---~-~~~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 84 ------PFNRPNDVAVDPDGN-LYVT-DSGGGGASG---IDPGSVYRIDP---D-GKVTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp ------CTEEEEEEEE-TTS--EEEE-EECCBCTTC---GGSEEEEEEET---T-SEEEEEEEEESSEEEEEEETTSSEE
T ss_pred ------ccCCCceEEEcCCCC-EEEE-ecCCCcccc---ccccceEEECC---C-CeEEEEecCcccccceEECCcchhe
Confidence 113446789999998 3333 222111100 01167999984 3 5555555555556789999999998
Q ss_pred EEEEeccccceEEEEEcCCCC
Q 002194 471 VYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+++.... .+||+++.+..
T Consensus 149 yv~ds~~---~~i~~~~~~~~ 166 (246)
T PF08450_consen 149 YVADSFN---GRIWRFDLDAD 166 (246)
T ss_dssp EEEETTT---TEEEEEEEETT
T ss_pred eeccccc---ceeEEEecccc
Confidence 8764433 46888888643
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-05 Score=76.42 Aligned_cols=172 Identities=15% Similarity=0.126 Sum_probs=105.9
Q ss_pred CCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHH
Q 002194 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (954)
Q Consensus 697 ~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~ 776 (954)
|.......+..|+++|+.|+. .++.-| +.......+...|+.+.+++..++-. .+++.|+|.|+|+-+.-.+
T Consensus 14 w~~~d~~~a~~l~~~G~~VvG---vdsl~Y---fw~~rtP~~~a~Dl~~~i~~y~~~w~--~~~vvLiGYSFGADvlP~~ 85 (192)
T PF06057_consen 14 WRDLDKQIAEALAKQGVPVVG---VDSLRY---FWSERTPEQTAADLARIIRHYRARWG--RKRVVLIGYSFGADVLPFI 85 (192)
T ss_pred chhhhHHHHHHHHHCCCeEEE---echHHH---HhhhCCHHHHHHHHHHHHHHHHHHhC--CceEEEEeecCCchhHHHH
Confidence 444556778899999999998 333222 22233446778999999998888743 3699999999999988888
Q ss_pred HHhCCC----cccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCC-CEEEEEeCCCCCCCCchHHH
Q 002194 777 LAHAPH----LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQS 851 (954)
Q Consensus 777 a~~~p~----~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~-P~Lii~G~~D~~v~~~~~~~ 851 (954)
..+-|. +++.+++++|.... .+.+......-+.... ..+.+...+.++.. |++.|.|++|.-..|+.
T Consensus 86 ~nrLp~~~r~~v~~v~Ll~p~~~~---dFeihv~~wlg~~~~~--~~~~~~pei~~l~~~~v~CiyG~~E~d~~cp~--- 157 (192)
T PF06057_consen 86 YNRLPAALRARVAQVVLLSPSTTA---DFEIHVSGWLGMGGDD--AAYPVIPEIAKLPPAPVQCIYGEDEDDSLCPS--- 157 (192)
T ss_pred HhhCCHHHHhheeEEEEeccCCcc---eEEEEhhhhcCCCCCc--ccCCchHHHHhCCCCeEEEEEcCCCCCCcCcc---
Confidence 887763 57777777764221 1110000000000000 12345556666764 99999998765432111
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
++. ..++.+..|| ||.|. .+...+.+.|++-++
T Consensus 158 ------l~~--~~~~~i~lpG-gHHfd--~dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 158 ------LRQ--PGVEVIALPG-GHHFD--GDYDALAKRILDALK 190 (192)
T ss_pred ------ccC--CCcEEEEcCC-CcCCC--CCHHHHHHHHHHHHh
Confidence 222 3468888998 77663 445566666666554
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.2e-06 Score=81.85 Aligned_cols=247 Identities=13% Similarity=0.151 Sum_probs=137.6
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeeccc-CCCccc---cccccceeEecCCeEEEEEecCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQ-SPDIYL---NAIFDNFVWVNNSTLLVCTIPLL 265 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~-~~~~~~---~~~~~~~~wspDG~~l~~~~~~~ 265 (954)
.+....|||||++|+..+ -+|-..+| +-.+|+.++-.. .....+ ...+--+.||-|...++..+
T Consensus 215 h~EcA~FSPDgqyLvsgS-------vDGFiEVW--ny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs--- 282 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGS-------VDGFIEVW--NYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS--- 282 (508)
T ss_pred chhheeeCCCCceEeecc-------ccceeeee--hhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC---
Confidence 566789999999998744 34455555 445676654221 111100 00122345666666655330
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCc-eeEcCCC--ccccccccCCC
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEIGPP--AVYTSLDPSPD 342 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~-~~~l~~~--~~~~~~~~SpD 342 (954)
.| +.-.+|++. +|. .+++... .++..+.||.|
T Consensus 283 -------------------------------------qD-------GkIKvWri~-tG~ClRrFdrAHtkGvt~l~FSrD 317 (508)
T KOG0275|consen 283 -------------------------------------QD-------GKIKVWRIE-TGQCLRRFDRAHTKGVTCLSFSRD 317 (508)
T ss_pred -------------------------------------cC-------CcEEEEEEe-cchHHHHhhhhhccCeeEEEEccC
Confidence 01 223344444 663 4444422 77889999999
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
+..|+..+. +..+.+.-+..++ .++.. ++...+....|++||..|+-.
T Consensus 318 ~SqiLS~sf-------------D~tvRiHGlKSGK~LKEfr-------------GHsSyvn~a~ft~dG~~iisa----- 366 (508)
T KOG0275|consen 318 NSQILSASF-------------DQTVRIHGLKSGKCLKEFR-------------GHSSYVNEATFTDDGHHIISA----- 366 (508)
T ss_pred cchhhcccc-------------cceEEEeccccchhHHHhc-------------CccccccceEEcCCCCeEEEe-----
Confidence 999988773 3356666555332 22222 222345667899999987665
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCc-eEE--eecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGP-EIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 498 (954)
+..+.+-+|+. .+.+- ... ...+..+.++-.-|..-.-+...++. ..+|++++.+. -.+..
T Consensus 367 --------SsDgtvkvW~~---KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs---ntv~imn~qGQ--vVrsf 430 (508)
T KOG0275|consen 367 --------SSDGTVKVWHG---KTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS---NTVYIMNMQGQ--VVRSF 430 (508)
T ss_pred --------cCCccEEEecC---cchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCC---CeEEEEeccce--EEeee
Confidence 44556777774 22221 111 22455566666666654333333443 46999999873 12222
Q ss_pred ecCCC--CCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEE
Q 002194 499 FDRSS--EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (954)
Q Consensus 499 ~~~~~--~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 567 (954)
..+.. ++... ...||.|.|++... ....||.+...+|+.++.
T Consensus 431 sSGkREgGdFi~------~~lSpkGewiYcig---------------------ED~vlYCF~~~sG~LE~t 474 (508)
T KOG0275|consen 431 SSGKREGGDFIN------AILSPKGEWIYCIG---------------------EDGVLYCFSVLSGKLERT 474 (508)
T ss_pred ccCCccCCceEE------EEecCCCcEEEEEc---------------------cCcEEEEEEeecCceeee
Confidence 22221 12111 35689998887665 123588898888877654
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5e-05 Score=84.93 Aligned_cols=183 Identities=17% Similarity=0.189 Sum_probs=114.6
Q ss_pred eeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCC
Q 002194 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (954)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~ 273 (954)
++||++|+.|+... +..|-.+|+.++... +....... ...+..++.+||+++|+.+.
T Consensus 25 ~~~s~nG~~L~t~~----------~d~Vi~idv~t~~~~-l~s~~~ed-~d~ita~~l~~d~~~L~~a~----------- 81 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC----------GDRVIIIDVATGSIA-LPSGSNED-EDEITALALTPDEEVLVTAS----------- 81 (775)
T ss_pred eeECCCCCEEEEec----------CceEEEEEccCCcee-cccCCccc-hhhhheeeecCCccEEEEee-----------
Confidence 89999999877654 567888999888763 33222211 11256889999999998771
Q ss_pred CCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEc--CCC-ccccccccCCCCcEEEEE
Q 002194 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI--GPP-AVYTSLDPSPDEKYILIS 349 (954)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l--~~~-~~~~~~~~SpDGk~l~~~ 349 (954)
....|-.+.+ +|+..+. ..+ +.+...+|+|-|-.++..
T Consensus 82 --------------------------------------rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtg 123 (775)
T KOG0319|consen 82 --------------------------------------RSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATG 123 (775)
T ss_pred --------------------------------------ccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEec
Confidence 1122444556 6643222 112 566678899999444444
Q ss_pred eecCCcccccccCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002194 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (954)
Q Consensus 350 s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (954)
.. ++.+.+||..++... .+..++ +-+.++.|.|+-.+.+....
T Consensus 124 ga-------------D~~v~VWdi~~~~~th~fkG~g-------------GvVssl~F~~~~~~~lL~sg---------- 167 (775)
T KOG0319|consen 124 GA-------------DGRVKVWDIKNGYCTHSFKGHG-------------GVVSSLLFHPHWNRWLLASG---------- 167 (775)
T ss_pred cc-------------cceEEEEEeeCCEEEEEecCCC-------------ceEEEEEeCCccchhheeec----------
Confidence 32 348899999976543 333332 22456788888776333211
Q ss_pred ccCCCeEEEEecCCCCCCC--ceEEeecccccCceeeccCCceEEEEEecc
Q 002194 429 VTPRDIIYTQQAEPVQGEG--PEILHKLDLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 429 ~~~~~~l~~~~~~~~~g~~--~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
.....+++|++ ..+. ...+..+...+.++++++|+..+++.+.++
T Consensus 168 -~~D~~v~vwnl---~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk 214 (775)
T KOG0319|consen 168 -ATDGTVRVWNL---NDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK 214 (775)
T ss_pred -CCCceEEEEEc---ccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc
Confidence 23457888886 3222 223355666788999999999999987654
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.1e-05 Score=83.44 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=60.3
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
+.+..++|||||++||.++.+. -+.|++.++.+..-+.. +..+|..-+.||||||
T Consensus 291 g~in~f~FS~DG~~LA~VSqDG-------------fLRvF~fdt~eLlg~mk------------SYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDG-------------FLRIFDFDTQELLGVMK------------SYFGGLLCVCWSPDGK 345 (636)
T ss_pred ccccceeEcCCCceEEEEecCc-------------eEEEeeccHHHHHHHHH------------hhccceEEEEEcCCcc
Confidence 5678899999999999999543 67788877544332222 2224445689999999
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe---ecccccCceeecc
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---KLDLRYGGISWCD 465 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~---~~~~~~~~~~~sp 465 (954)
.|+.- ++++.|-+|.+ . +.+.+. .+...+..++|.|
T Consensus 346 yIvtG-------------GEDDLVtVwSf---~--erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 346 YIVTG-------------GEDDLVTVWSF---E--ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEec-------------CCcceEEEEEe---c--cceEEEeccccccceeeEeecc
Confidence 87664 45667777775 2 233342 3444567778866
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.2e-05 Score=76.74 Aligned_cols=198 Identities=14% Similarity=0.215 Sum_probs=119.3
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC----Cceeec---------------ccCCCccccccccce
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT----GKARPL---------------FQSPDIYLNAIFDNF 249 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~----g~~~~l---------------t~~~~~~~~~~~~~~ 249 (954)
..+...+|||||..+|. ++-...|-++|++- .+.+++ .++-+. +..+
T Consensus 113 ~~cR~aafs~DG~lvAT---------GsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~de-----vn~l 178 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVAT---------GSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDE-----VNDL 178 (430)
T ss_pred cceeeeeeCCCCcEEEc---------cCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCc-----ccce
Confidence 35778899999998887 44567788888761 111111 111111 5577
Q ss_pred eEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCC-----c
Q 002194 250 VWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-----T 324 (954)
Q Consensus 250 ~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G-----~ 324 (954)
.|.|-..+|+..+ . ...|-+.|... .
T Consensus 179 ~FHPre~ILiS~s---------------------r----------------------------D~tvKlFDfsK~saKrA 209 (430)
T KOG0640|consen 179 DFHPRETILISGS---------------------R----------------------------DNTVKLFDFSKTSAKRA 209 (430)
T ss_pred eecchhheEEecc---------------------C----------------------------CCeEEEEecccHHHHHH
Confidence 7888887777541 1 12233444421 2
Q ss_pred eeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccce
Q 002194 325 VKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSI 404 (954)
Q Consensus 325 ~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~ 404 (954)
.+.+.+...+.+++|.|-|.+|+....+. .+.+||+++-+.-.-.. |.. .+..++..+
T Consensus 210 ~K~~qd~~~vrsiSfHPsGefllvgTdHp-------------~~rlYdv~T~Qcfvsan-Pd~--------qht~ai~~V 267 (430)
T KOG0640|consen 210 FKVFQDTEPVRSISFHPSGEFLLVGTDHP-------------TLRLYDVNTYQCFVSAN-PDD--------QHTGAITQV 267 (430)
T ss_pred HHHhhccceeeeEeecCCCceEEEecCCC-------------ceeEEeccceeEeeecC-ccc--------ccccceeEE
Confidence 22333337788999999999999988543 78899999766433222 211 233556778
Q ss_pred eeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe--ecccccCceeeccCCceEEEEEeccccceE
Q 002194 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTR 482 (954)
Q Consensus 405 ~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 482 (954)
.+|+.|+ +|.+. +..+.|-+||= ..+.-.+.+. .+...+-+..|+.+|++|+.+..+.. ..
T Consensus 268 ~Ys~t~~--lYvTa-----------SkDG~IklwDG--VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~--vk 330 (430)
T KOG0640|consen 268 RYSSTGS--LYVTA-----------SKDGAIKLWDG--VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST--VK 330 (430)
T ss_pred EecCCcc--EEEEe-----------ccCCcEEeecc--ccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce--ee
Confidence 9999997 34322 33557778871 2222223331 22334667899999999998765543 56
Q ss_pred EEEEcC
Q 002194 483 TWVISP 488 (954)
Q Consensus 483 l~~~d~ 488 (954)
||.+..
T Consensus 331 LWEi~t 336 (430)
T KOG0640|consen 331 LWEIST 336 (430)
T ss_pred eeeecC
Confidence 666653
|
|
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-05 Score=78.53 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=42.6
Q ss_pred CCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
..+.+|+.++.|++|..|. .++...+.+.. +...++.+|+| ||.+. ..+. +++++++.+++
T Consensus 173 ~pl~~pi~~~~G~~D~~vs--~~~~~~W~~~t---~~~f~l~~fdG-gHFfl-~~~~----~~v~~~i~~~l 233 (244)
T COG3208 173 APLACPIHAFGGEKDHEVS--RDELGAWREHT---KGDFTLRVFDG-GHFFL-NQQR----EEVLARLEQHL 233 (244)
T ss_pred CCcCcceEEeccCcchhcc--HHHHHHHHHhh---cCCceEEEecC-cceeh-hhhH----HHHHHHHHHHh
Confidence 3578999999999999987 55555555544 44589999998 99885 2333 34455555554
|
|
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.2e-06 Score=86.98 Aligned_cols=108 Identities=11% Similarity=-0.074 Sum_probs=72.2
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~a 746 (954)
.|++|++||..... ...+.......++. .+|.|+..+.. +.+..... ........+++...
T Consensus 36 ~p~vilIHG~~~~~-------------~~~~~~~l~~~ll~~~~~nVi~vD~~---~~~~~~y~~a~~~~~~v~~~la~~ 99 (275)
T cd00707 36 RPTRFIIHGWTSSG-------------EESWISDLRKAYLSRGDYNVIVVDWG---RGANPNYPQAVNNTRVVGAELAKF 99 (275)
T ss_pred CCcEEEEcCCCCCC-------------CCcHHHHHHHHHHhcCCCEEEEEECc---cccccChHHHHHhHHHHHHHHHHH
Confidence 58899999953110 01111223333444 68999995553 32221111 11123345677888
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
+++|.+...++.+++.++|||+||.+|..++.+.|++++.++.+.|.
T Consensus 100 l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa 146 (275)
T cd00707 100 LDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPA 146 (275)
T ss_pred HHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCC
Confidence 88888775567789999999999999999999999999999999875
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.8e-05 Score=79.33 Aligned_cols=60 Identities=17% Similarity=0.319 Sum_probs=47.2
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
..+...+|+||+..+.+.+ ..+.++++|+..|............ +..++|.|-++.|+..
T Consensus 124 ~diydL~Ws~d~~~l~s~s---------~dns~~l~Dv~~G~l~~~~~dh~~y----vqgvawDpl~qyv~s~ 183 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFLVSGS---------VDNSVRLWDVHAGQLLAILDDHEHY----VQGVAWDPLNQYVASK 183 (434)
T ss_pred cchhhhhccCCCceeeeee---------ccceEEEEEeccceeEeeccccccc----cceeecchhhhhhhhh
Confidence 4788899999999999965 3667888888888876665544433 6789999999988865
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00092 Score=75.20 Aligned_cols=364 Identities=13% Similarity=0.107 Sum_probs=197.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCcccccccc--------ceeeeeeecCC--C---CCCcceeeEeceEEEEccCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPE--------EKLAGLRIDGK--C---NTRSRMSFYTGIGIHQLFPDGKL 176 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~---~~~~~~~~~~~l~l~~~~~~g~~ 176 (954)
.+.+++|++|+..+++++++..-.+|++..-. ..+.+..+-.+ + ....+.+..+.+.+|+.++ +..
T Consensus 194 ~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es-~~~ 272 (775)
T KOG0319|consen 194 AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSES-GKC 272 (775)
T ss_pred heeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEeccc-chh
Confidence 57899999999999999988555566553211 11122222211 1 1112223335667777542 211
Q ss_pred CceeeeecCCCCCcccce-eecCCCCeEEEEEeeccccCCCCceEEEEEECCCCcee-ecccCCCccccccccce-eEec
Q 002194 177 GQEIEIQGFPDGAKLNFV-TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PLFQSPDIYLNAIFDNF-VWVN 253 (954)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~-~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~~~-~wsp 253 (954)
...++ .++.....+. ...-+++.++.+. ..+|+++|.++.+.. ++....+. +.++ -|-|
T Consensus 273 ~~~~~---~~~~~e~~~~~~~~~~~~~l~vta----------eQnl~l~d~~~l~i~k~ivG~ndE-----I~Dm~~lG~ 334 (775)
T KOG0319|consen 273 VYKQR---QSDSEEIDHLLAIESMSQLLLVTA----------EQNLFLYDEDELTIVKQIVGYNDE-----ILDMKFLGP 334 (775)
T ss_pred hhhhc---cCCchhhhcceeccccCceEEEEc----------cceEEEEEccccEEehhhcCCchh-----heeeeecCC
Confidence 11111 1111222232 3344666666654 578999998876653 33222221 4444 4568
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-
Q 002194 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP- 331 (954)
Q Consensus 254 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~- 331 (954)
+.+.+++++ | ..+|-++++ +-....+...
T Consensus 335 e~~~laVAT---------------------N----------------------------s~~lr~y~~~~~~c~ii~GH~ 365 (775)
T KOG0319|consen 335 EESHLAVAT---------------------N----------------------------SPELRLYTLPTSYCQIIPGHT 365 (775)
T ss_pred ccceEEEEe---------------------C----------------------------CCceEEEecCCCceEEEeCch
Confidence 888888872 1 123445576 4344444443
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
..+.+++...+|-+|+..+.+ +.+.+|.++.+..+.+... ..+++...+..++.+.-|.
T Consensus 366 e~vlSL~~~~~g~llat~sKD-------------~svilWr~~~~~~~~~~~a--------~~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 366 EAVLSLDVWSSGDLLATGSKD-------------KSVILWRLNNNCSKSLCVA--------QANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred hheeeeeecccCcEEEEecCC-------------ceEEEEEecCCcchhhhhh--------hhcccccccceeeecccCc
Confidence 566667655578666666533 3788887753332221110 0112223344566655554
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCC--CCCCceEE------eecccccCceeeccCCceEEEEEeccccceEE
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPV--QGEGPEIL------HKLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~g~~~~~l------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (954)
.++.. ++....+-+|++ |. +...+..+ ..++-+++.++.+|+.+.|+..+.+++ ..|
T Consensus 425 sffvs------------vS~D~tlK~W~l-~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt--aKi 489 (775)
T KOG0319|consen 425 SFFVS------------VSQDCTLKLWDL-PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT--AKI 489 (775)
T ss_pred cEEEE------------ecCCceEEEecC-CCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc--eee
Confidence 43333 133445666665 22 11122222 235778899999999999999888876 789
Q ss_pred EEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCC
Q 002194 484 WVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (954)
Q Consensus 484 ~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 563 (954)
|.++ +. .......++...+.. ++|+|..+.++-.+. ...+.+|.+.+.+
T Consensus 490 W~le-~~---~l~~vLsGH~RGvw~------V~Fs~~dq~laT~Sg---------------------D~TvKIW~is~fS 538 (775)
T KOG0319|consen 490 WDLE-QL---RLLGVLSGHTRGVWC------VSFSKNDQLLATCSG---------------------DKTVKIWSISTFS 538 (775)
T ss_pred eccc-Cc---eEEEEeeCCccceEE------EEeccccceeEeccC---------------------CceEEEEEeccce
Confidence 9988 22 334445555555555 889998887776651 1248889888877
Q ss_pred eEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeE
Q 002194 564 KERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (954)
Q Consensus 564 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~ 623 (954)
...-..+... ++. ..+|-.+|..++-..+ -+-+-+|++.+++...
T Consensus 539 ClkT~eGH~~-------aVl----ra~F~~~~~qliS~~a----dGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 539 CLKTFEGHTS-------AVL----RASFIRNGKQLISAGA----DGLIKLWNIKTNECEM 583 (775)
T ss_pred eeeeecCccc-------eeE----eeeeeeCCcEEEeccC----CCcEEEEeccchhhhh
Confidence 6554443211 111 1345555666553222 3457777776665433
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.001 Score=71.52 Aligned_cols=142 Identities=10% Similarity=0.156 Sum_probs=86.3
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
.....++..|+...++..+.+ +.+.+|+-..-+...+...+ .....|.|-|
T Consensus 369 delwgla~hps~~q~~T~gqd-------------k~v~lW~~~k~~wt~~~~d~---------------~~~~~fhpsg- 419 (626)
T KOG2106|consen 369 DELWGLATHPSKNQLLTCGQD-------------KHVRLWNDHKLEWTKIIEDP---------------AECADFHPSG- 419 (626)
T ss_pred cceeeEEcCCChhheeeccCc-------------ceEEEccCCceeEEEEecCc---------------eeEeeccCcc-
Confidence 455567788887777766533 37888982222333444322 2356788988
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
.++.- ...++.+++|. ++.....+......+.-++|||||..|+..+.++- ..||+++.++.
T Consensus 420 ~va~G-------------t~~G~w~V~d~---e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~--iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 420 VVAVG-------------TATGRWFVLDT---ETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNH--IYIYRVSANGR 481 (626)
T ss_pred eEEEe-------------eccceEEEEec---ccceeEEEEecCCceEEEEEcCCCCEEEEecCCCe--EEEEEECCCCc
Confidence 45544 23557888885 44444444444666778999999999999875543 67788887763
Q ss_pred CCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 492 ~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.-..+-.-....+.. +-||+|++++.-..
T Consensus 482 --~y~r~~k~~gs~ith------LDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 482 --KYSRVGKCSGSPITH------LDWSSDSQFLVSNS 510 (626)
T ss_pred --EEEEeeeecCceeEE------eeecCCCceEEecc
Confidence 212211111111111 67999999887655
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.2e-05 Score=77.36 Aligned_cols=129 Identities=17% Similarity=0.178 Sum_probs=72.8
Q ss_pred eEEEEEe-CCceeEcCCC-------ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc--CceEEEeccC
Q 002194 315 QLVLVSL-DGTVKEIGPP-------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDL 384 (954)
Q Consensus 315 ~l~~~~~-~G~~~~l~~~-------~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~~~~l~~~ 384 (954)
-|.++|. +|+.+--... ....++.|||||..|...-+ ..|.++|+. |......+..
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk--------------rcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK--------------RCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc--------------ceEEEeeccCCCCCCcchhhh
Confidence 3778888 8876644322 22347899999999876542 278888874 3332222221
Q ss_pred CCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeec
Q 002194 385 PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWC 464 (954)
Q Consensus 385 ~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~s 464 (954)
..... +..+-..-++|||-....+.+ ++. ..+-.||..+ +.+....|..+.+.+..+.|.
T Consensus 200 ~~~k~------gq~giisc~a~sP~~~~~~a~-----gsY-----~q~~giy~~~----~~~pl~llggh~gGvThL~~~ 259 (406)
T KOG2919|consen 200 TKGKF------GQKGIISCFAFSPMDSKTLAV-----GSY-----GQRVGIYNDD----GRRPLQLLGGHGGGVTHLQWC 259 (406)
T ss_pred hcccc------cccceeeeeeccCCCCcceee-----ecc-----cceeeeEecC----CCCceeeecccCCCeeeEEec
Confidence 11000 000112347888866544443 000 1122344443 333345556677788999999
Q ss_pred cCCceEEEEEecc
Q 002194 465 DDSLALVYESWYK 477 (954)
Q Consensus 465 pDg~~l~~~~~~~ 477 (954)
+||..|+..+..+
T Consensus 260 edGn~lfsGaRk~ 272 (406)
T KOG2919|consen 260 EDGNKLFSGARKD 272 (406)
T ss_pred cCcCeecccccCC
Confidence 9999888776544
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0004 Score=78.04 Aligned_cols=201 Identities=16% Similarity=0.097 Sum_probs=122.8
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+....+|.|...|+- . .+..|-+|+.++.+..+...... +-...|-|.++.|+...
T Consensus 374 ~dVRsl~vS~d~~~~~S-g---------a~~SikiWn~~t~kciRTi~~~y------~l~~~Fvpgd~~Iv~G~------ 431 (888)
T KOG0306|consen 374 SDVRSLCVSSDSILLAS-G---------AGESIKIWNRDTLKCIRTITCGY------ILASKFVPGDRYIVLGT------ 431 (888)
T ss_pred hheeEEEeecCceeeee-c---------CCCcEEEEEccCcceeEEecccc------EEEEEecCCCceEEEec------
Confidence 37888999977654443 2 24566666777666543322221 34667889888888651
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee-EcCCC-ccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-~l~~~-~~~~~~~~SpDGk~ 345 (954)
..+.|-++|+ +.... .+... +.+.+++.+||++.
T Consensus 432 -------------------------------------------k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g 468 (888)
T KOG0306|consen 432 -------------------------------------------KNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKG 468 (888)
T ss_pred -------------------------------------------cCCceEEEEeehhhhhhhhhccccceeeeeecCCCCc
Confidence 2345667777 55322 22223 77889999999999
Q ss_pred EEEEeecCCcccccccCCCCcceEEEecc------CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTD------GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~------g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
.+..+.+. .+.+||.. |.+.+.|.-.. .... .....+..+++||||+.+++..
T Consensus 469 ~vT~saDk-------------tVkfWdf~l~~~~~gt~~k~lsl~~-~rtL-----el~ddvL~v~~Spdgk~LaVsL-- 527 (888)
T KOG0306|consen 469 FVTGSADK-------------TVKFWDFKLVVSVPGTQKKVLSLKH-TRTL-----ELEDDVLCVSVSPDGKLLAVSL-- 527 (888)
T ss_pred eEEecCCc-------------EEEEEeEEEEeccCcccceeeeecc-ceEE-----eccccEEEEEEcCCCcEEEEEe--
Confidence 99988543 66677653 22222222111 0000 0012345689999999887751
Q ss_pred ccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
. +..-+||.+| +=.--..|.++...+..+..|||++.|+..+-+++ ..+|-+|-..
T Consensus 528 L---------dnTVkVyflD----tlKFflsLYGHkLPV~smDIS~DSklivTgSADKn--VKiWGLdFGD 583 (888)
T KOG0306|consen 528 L---------DNTVKVYFLD----TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN--VKIWGLDFGD 583 (888)
T ss_pred c---------cCeEEEEEec----ceeeeeeecccccceeEEeccCCcCeEEeccCCCc--eEEeccccch
Confidence 1 2233555554 11122345677788889999999999998876665 7888887655
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.2e-05 Score=83.56 Aligned_cols=235 Identities=14% Similarity=0.054 Sum_probs=140.1
Q ss_pred cCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeee-ecC
Q 002194 107 DAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEI-QGF 185 (954)
Q Consensus 107 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~l-t~~ 185 (954)
.....++..++|||+.|+.-... ..|-|||+.. +..+| ..+
T Consensus 464 rdnyiRSckL~pdgrtLivGGea---------------------------------stlsiWDLAa-----pTprikael 505 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEA---------------------------------STLSIWDLAA-----PTPRIKAEL 505 (705)
T ss_pred cccceeeeEecCCCceEEecccc---------------------------------ceeeeeeccC-----CCcchhhhc
Confidence 33457788899999999876543 4788999954 11122 123
Q ss_pred CCC-CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc-eeecccCCCccccccccceeEecCCeEEEEEec
Q 002194 186 PDG-AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (954)
Q Consensus 186 ~~~-~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (954)
+.. ......+.|||.+ |+|..- .+ .+|-+||+.... .|++-....+ ..-+..|+||..|+....
T Consensus 506 tssapaCyALa~spDak-vcFscc------sd--GnI~vwDLhnq~~VrqfqGhtDG-----ascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 506 TSSAPACYALAISPDAK-VCFSCC------SD--GNIAVWDLHNQTLVRQFQGHTDG-----ASCIDISKDGTKLWTGGL 571 (705)
T ss_pred CCcchhhhhhhcCCccc-eeeeec------cC--CcEEEEEcccceeeecccCCCCC-----ceeEEecCCCceeecCCC
Confidence 322 2677788999986 777654 22 455555665543 3444333332 567889999999985410
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCCccccccccCC
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSP 341 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~~~~~~~~~Sp 341 (954)
...+..+|+ +|. +.+-.-...+.++..+|
T Consensus 572 -------------------------------------------------DntvRcWDlregrqlqqhdF~SQIfSLg~cP 602 (705)
T KOG0639|consen 572 -------------------------------------------------DNTVRCWDLREGRQLQQHDFSSQIFSLGYCP 602 (705)
T ss_pred -------------------------------------------------ccceeehhhhhhhhhhhhhhhhhheecccCC
Confidence 112445566 552 21111116678889999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
.|.||++..... +++|....+.+..+|..++. =+-++.|++-|+..+-.
T Consensus 603 ~~dWlavGMens-------------~vevlh~skp~kyqlhlheS-------------cVLSlKFa~cGkwfvSt----- 651 (705)
T KOG0639|consen 603 TGDWLAVGMENS-------------NVEVLHTSKPEKYQLHLHES-------------CVLSLKFAYCGKWFVST----- 651 (705)
T ss_pred CccceeeecccC-------------cEEEEecCCccceeeccccc-------------EEEEEEecccCceeeec-----
Confidence 999999987332 78888877777666665431 23578899999854433
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEE
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (954)
+..+.+-.|.. | -|..+-+. +....+-+...|-|.++||..+.++. ..+|.+
T Consensus 652 --------GkDnlLnawrt-P-yGasiFqs-kE~SsVlsCDIS~ddkyIVTGSGdkk--ATVYeV 703 (705)
T KOG0639|consen 652 --------GKDNLLNAWRT-P-YGASIFQS-KESSSVLSCDISFDDKYIVTGSGDKK--ATVYEV 703 (705)
T ss_pred --------CchhhhhhccC-c-cccceeec-cccCcceeeeeccCceEEEecCCCcc--eEEEEE
Confidence 22333333432 1 12222222 22334556677889999998876542 446543
|
|
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.5e-05 Score=77.46 Aligned_cols=113 Identities=16% Similarity=0.169 Sum_probs=72.3
Q ss_pred HHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHH-HhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCc
Q 002194 745 AAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLL-AHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSP 822 (954)
Q Consensus 745 ~av~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a-~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 822 (954)
+.++.|.+. ..+| +.+.++|||.|+.+++.++ .+...+++++++++|+..... ...... .....+
T Consensus 41 ~W~~~l~~~i~~~~-~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~--~~~~~~----------~~~f~~ 107 (171)
T PF06821_consen 41 EWVQALDQAIDAID-EPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDP--EPFPPE----------LDGFTP 107 (171)
T ss_dssp HHHHHHHHCCHC-T-TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCH--HCCTCG----------GCCCTT
T ss_pred HHHHHHHHHHhhcC-CCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccc--cchhhh----------cccccc
Confidence 444445444 2233 4699999999999999999 667788999999999743100 000000 000011
Q ss_pred ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 002194 823 FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 823 ~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
. ....+..|.+++.+++|+.|| ++.+.++.+++. .+++.++++||...
T Consensus 108 ~-p~~~l~~~~~viaS~nDp~vp--~~~a~~~A~~l~-----a~~~~~~~~GHf~~ 155 (171)
T PF06821_consen 108 L-PRDPLPFPSIVIASDNDPYVP--FERAQRLAQRLG-----AELIILGGGGHFNA 155 (171)
T ss_dssp S-HCCHHHCCEEEEEETTBSSS---HHHHHHHHHHHT------EEEEETS-TTSSG
T ss_pred C-cccccCCCeEEEEcCCCCccC--HHHHHHHHHHcC-----CCeEECCCCCCccc
Confidence 1 111234667999999999999 999999999884 48899999999763
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00015 Score=75.68 Aligned_cols=131 Identities=18% Similarity=0.254 Sum_probs=77.7
Q ss_pred eceEEEEccCCCCCC---ceeeeecCCCC-CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEE------CCC----
Q 002194 163 TGIGIHQLFPDGKLG---QEIEIQGFPDG-AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVAD------VDT---- 228 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~---~~~~lt~~~~~-~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d------~~~---- 228 (954)
.+|.+|.++.+-..+ ...-+..+..+ ..++.++|+|+|..||-.. +++..-||... .++
T Consensus 36 ~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~-------D~g~v~lWk~~~~~~~~~d~e~~~ 108 (434)
T KOG1009|consen 36 KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG-------DGGEVFLWKQGDVRIFDADTEADL 108 (434)
T ss_pred cceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC-------CCceEEEEEecCcCCccccchhhh
Confidence 466666664221111 12223333332 3788999999999998743 34455666554 122
Q ss_pred -Cc---eeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccc
Q 002194 229 -GK---ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYD 304 (954)
Q Consensus 229 -g~---~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d 304 (954)
.+ .+++...... .+..++|+||+..+++.+
T Consensus 109 ~ke~w~v~k~lr~h~~----diydL~Ws~d~~~l~s~s------------------------------------------ 142 (434)
T KOG1009|consen 109 NKEKWVVKKVLRGHRD----DIYDLAWSPDSNFLVSGS------------------------------------------ 142 (434)
T ss_pred CccceEEEEEeccccc----chhhhhccCCCceeeeee------------------------------------------
Confidence 10 0111111111 155889999999888761
Q ss_pred cccccccccceEEEEEe-CCceeEcCCC--ccccccccCCCCcEEEEEeecC
Q 002194 305 EDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYILISSIHR 353 (954)
Q Consensus 305 ~~~~~~~~~~~l~~~~~-~G~~~~l~~~--~~~~~~~~SpDGk~l~~~s~~~ 353 (954)
....++.+|+ .|....+... ..+..++|.|-+++|+..+.++
T Consensus 143 -------~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 143 -------VDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred -------ccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 1234667788 7765555444 6778999999999999877554
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00017 Score=73.16 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=61.9
Q ss_pred ccccccccCCC-CcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPD-EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpD-Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
+.+.-++|||- -+.++..+. .+.+-|+.-++..+-.+.. +..+|+..+.|-+||
T Consensus 208 giisc~a~sP~~~~~~a~gsY-------------~q~~giy~~~~~~pl~llg------------gh~gGvThL~~~edG 262 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSY-------------GQRVGIYNDDGRRPLQLLG------------GHGGGVTHLQWCEDG 262 (406)
T ss_pred ceeeeeeccCCCCcceeeecc-------------cceeeeEecCCCCceeeec------------ccCCCeeeEEeccCc
Confidence 45667889994 456666652 2355566655544333222 233678899999999
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEeeccc-ccCce--eeccCCceEEEEEeccccceEEEEE
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDL-RYGGI--SWCDDSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~-~~~~~--~~spDg~~l~~~~~~~~~~~~l~~~ 486 (954)
++++.-. ...+.|..||+ ...+.+ ..|..+-. ....+ ...|+|+.|+....++. .++|
T Consensus 263 n~lfsGa------------Rk~dkIl~WDi--R~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~--V~vw-- 324 (406)
T KOG2919|consen 263 NKLFSGA------------RKDDKILCWDI--RYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGS--VRVW-- 324 (406)
T ss_pred Ceecccc------------cCCCeEEEEee--hhccchhhhhhhhccCccceEEEecCCCCceeeccCCCcc--EEEE--
Confidence 9654431 12346777876 222222 12211111 11223 44678888876643332 4444
Q ss_pred cCCC
Q 002194 487 SPGS 490 (954)
Q Consensus 487 d~~~ 490 (954)
|+++
T Consensus 325 dlk~ 328 (406)
T KOG2919|consen 325 DLKD 328 (406)
T ss_pred ecCC
Confidence 4444
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.7e-05 Score=76.42 Aligned_cols=278 Identities=15% Similarity=0.107 Sum_probs=150.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCcccccc---------------------------ccceeeeeeecCCCCCCcceeeE
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELAR---------------------------PEEKLAGLRIDGKCNTRSRMSFY 162 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 162 (954)
..+..+|||||..+|.-+.++-..+.+..+ +-..+.-+.+.|........+.+
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence 356789999999999877663333222221 11111334444444444444444
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..|.+.|.... ...+...-+.+...+...+|.|.|..|+... ....+.++|+++-+.-.-. .+....
T Consensus 194 ~tvKlFDfsK~---saKrA~K~~qd~~~vrsiSfHPsGefllvgT---------dHp~~rlYdv~T~Qcfvsa-nPd~qh 260 (430)
T KOG0640|consen 194 NTVKLFDFSKT---SAKRAFKVFQDTEPVRSISFHPSGEFLLVGT---------DHPTLRLYDVNTYQCFVSA-NPDDQH 260 (430)
T ss_pred CeEEEEecccH---HHHHHHHHhhccceeeeEeecCCCceEEEec---------CCCceeEEeccceeEeeec-Cccccc
Confidence 56777777421 1122222244445788899999999999844 4777888888876654322 244445
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
.+.+..+..|+.|++-+..+ . .+.|-++|-
T Consensus 261 t~ai~~V~Ys~t~~lYvTaS---------------------k----------------------------DG~IklwDGV 291 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTAS---------------------K----------------------------DGAIKLWDGV 291 (430)
T ss_pred ccceeEEEecCCccEEEEec---------------------c----------------------------CCcEEeeccc
Confidence 55577888999997555431 1 122444443
Q ss_pred CCc-eeEcCCC---ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCccc-CCccccc
Q 002194 322 DGT-VKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAED-IPIAFNS 396 (954)
Q Consensus 322 ~G~-~~~l~~~---~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~-~p~~~~~ 396 (954)
+++ ++.+.+. ..+.+..|+.|||+|+.+..+. .+.+|.+.++..-......+... .-...+.
T Consensus 292 S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS-------------~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqA 358 (430)
T KOG0640|consen 292 SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS-------------TVKLWEISTGRMLKEYTGAGTTGRQKHRTQA 358 (430)
T ss_pred cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc-------------eeeeeeecCCceEEEEecCCcccchhhhhhh
Confidence 332 2333322 5567889999999999877443 78899998665433222221111 0000000
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE-eecccccCceeeccCCceEEEEEe
Q 002194 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESW 475 (954)
Q Consensus 397 ~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~~~~~~~~spDg~~l~~~~~ 475 (954)
+..-...+...||.+ .+.+..||. .++.....+ .++.+.+..+.-||.+-.++..+.
T Consensus 359 vFNhtEdyVl~pDEa--------------------s~slcsWda--Rtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsd 416 (430)
T KOG0640|consen 359 VFNHTEDYVLFPDEA--------------------SNSLCSWDA--RTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD 416 (430)
T ss_pred hhcCccceEEccccc--------------------cCceeeccc--cchhhhhhcccCCCCCceEEEeCCCCCceeeecc
Confidence 101112233333332 335667774 222222333 345666666777888776555443
Q ss_pred ccccceEEEEE
Q 002194 476 YKTRRTRTWVI 486 (954)
Q Consensus 476 ~~~~~~~l~~~ 486 (954)
+ .+.+.|.-
T Consensus 417 D--~raRFWyr 425 (430)
T KOG0640|consen 417 D--FRARFWYR 425 (430)
T ss_pred c--ceeeeeee
Confidence 3 23566653
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00016 Score=75.86 Aligned_cols=213 Identities=19% Similarity=0.122 Sum_probs=118.9
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceeec-CCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc-
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWS-QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY- 241 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wS-PDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~- 241 (954)
.|+.++..+ +....+. ++ . .....+. +|| .|+++. ...+.++|.++++.+.+.......
T Consensus 23 ~i~~~~~~~----~~~~~~~-~~--~-~~G~~~~~~~g-~l~v~~----------~~~~~~~d~~~g~~~~~~~~~~~~~ 83 (246)
T PF08450_consen 23 RIYRVDPDT----GEVEVID-LP--G-PNGMAFDRPDG-RLYVAD----------SGGIAVVDPDTGKVTVLADLPDGGV 83 (246)
T ss_dssp EEEEEETTT----TEEEEEE-SS--S-EEEEEEECTTS-EEEEEE----------TTCEEEEETTTTEEEEEEEEETTCS
T ss_pred EEEEEECCC----CeEEEEe-cC--C-CceEEEEccCC-EEEEEE----------cCceEEEecCCCcEEEEeeccCCCc
Confidence 677777632 3333232 22 2 3444555 665 455543 334566698888877776542111
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
-......+++.|||+ |+++....... ... ....||+++.
T Consensus 84 ~~~~~ND~~vd~~G~-ly~t~~~~~~~--------------------------------~~~--------~~g~v~~~~~ 122 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGN-LYVTDSGGGGA--------------------------------SGI--------DPGSVYRIDP 122 (246)
T ss_dssp CTEEEEEEEE-TTS--EEEEEECCBCT--------------------------------TCG--------GSEEEEEEET
T ss_pred ccCCCceEEEcCCCC-EEEEecCCCcc--------------------------------ccc--------cccceEEECC
Confidence 111256889999998 66652211110 000 1156999998
Q ss_pred CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc--CceE---EEeccCCCcccCCcccc
Q 002194 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFV---RELCDLPLAEDIPIAFN 395 (954)
Q Consensus 322 ~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~~---~~l~~~~~~~~~p~~~~ 395 (954)
+|+.+.+... .....++|||||+.|+++... .+.|+.++++ +... +.+...+...
T Consensus 123 ~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------- 183 (246)
T PF08450_consen 123 DGKVTVVADGLGFPNGIAFSPDGKTLYVADSF------------NGRIWRFDLDADGGELSNRRVFIDFPGGP------- 183 (246)
T ss_dssp TSEEEEEEEEESSEEEEEEETTSSEEEEEETT------------TTEEEEEEEETTTCCEEEEEEEEE-SSSS-------
T ss_pred CCeEEEEecCcccccceEECCcchheeecccc------------cceeEEEeccccccceeeeeeEEEcCCCC-------
Confidence 8777766655 566789999999999876533 2378888886 3312 2232222110
Q ss_pred ccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceee-ccCCceEEEEE
Q 002194 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW-CDDSLALVYES 474 (954)
Q Consensus 396 ~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~-spDg~~l~~~~ 474 (954)
.....+++..+|+ +|... -..+.|++++. +|.....+.-....+..++| .+|.+.|+..+
T Consensus 184 ---g~pDG~~vD~~G~--l~va~-----------~~~~~I~~~~p---~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 184 ---GYPDGLAVDSDGN--LWVAD-----------WGGGRIVVFDP---DGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ---CEEEEEEEBTTS---EEEEE-----------ETTTEEEEEET---TSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ---cCCCcceEcCCCC--EEEEE-----------cCCCEEEEECC---CccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 1234688888886 23211 12558899984 45444555444346778888 46777777654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.4e-05 Score=74.40 Aligned_cols=195 Identities=18% Similarity=0.193 Sum_probs=115.8
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCC--ceeecccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
.-+...+||.|.++|+... ...-|.++|++.- .+..+...+. .+..+.|-...+.|..++
T Consensus 101 hivk~~af~~ds~~lltgg---------~ekllrvfdln~p~App~E~~ghtg-----~Ir~v~wc~eD~~iLSSa---- 162 (334)
T KOG0278|consen 101 HIVKAVAFSQDSNYLLTGG---------QEKLLRVFDLNRPKAPPKEISGHTG-----GIRTVLWCHEDKCILSSA---- 162 (334)
T ss_pred heeeeEEecccchhhhccc---------hHHHhhhhhccCCCCCchhhcCCCC-----cceeEEEeccCceEEeec----
Confidence 3677789999999888732 2333444454432 3333333332 267788887776666541
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCCccccccccCCCCc
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEK 344 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~~~~~~~~~SpDGk 344 (954)
....+.++|. +|. ++.|..+..+.+..+|+||+
T Consensus 163 ---------------------------------------------dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ 197 (334)
T KOG0278|consen 163 ---------------------------------------------DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR 197 (334)
T ss_pred ---------------------------------------------cCCceEEEEeccCcEEEEEecCCCCcceeeccCCC
Confidence 1122445676 774 55555557888999999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
+|..+- ...|..||.+.=. .|... ..| ..+.+.+.+|+.. +++. |
T Consensus 198 ilTia~--------------gssV~Fwdaksf~--~lKs~----k~P-------~nV~SASL~P~k~-~fVa-----G-- 242 (334)
T KOG0278|consen 198 ILTIAY--------------GSSVKFWDAKSFG--LLKSY----KMP-------CNVESASLHPKKE-FFVA-----G-- 242 (334)
T ss_pred EEEEec--------------CceeEEecccccc--ceeec----cCc-------cccccccccCCCc-eEEe-----c--
Confidence 887654 1267778776421 22221 112 2345677888874 3332 1
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEE-eecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
.....+|.+|. .+|.+.... .++.+.+-.+.|||||..-+..+.+++ .+||...+..
T Consensus 243 -----ged~~~~kfDy--~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT--irlWQt~~~~ 300 (334)
T KOG0278|consen 243 -----GEDFKVYKFDY--NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT--IRLWQTTPGK 300 (334)
T ss_pred -----CcceEEEEEec--cCCceeeecccCCCCceEEEEECCCCceeeccCCCce--EEEEEecCCC
Confidence 22346777875 234343332 455677788999999985555544443 8899887654
|
|
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0003 Score=71.46 Aligned_cols=130 Identities=17% Similarity=0.130 Sum_probs=77.8
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (954)
..+.+...+|..+...-.+-... +...+..+||-+||.| |+.+.|. -....|.+.|+.++..+
T Consensus 7 ~~~k~~~~~~~~~~~~a~y~D~~--~~gs~~gTVv~~hGsP-----------GSH~DFk----Yi~~~l~~~~iR~I~iN 69 (297)
T PF06342_consen 7 KLVKFQAENGKIVTVQAVYEDSL--PSGSPLGTVVAFHGSP-----------GSHNDFK----YIRPPLDEAGIRFIGIN 69 (297)
T ss_pred EEEEcccccCceEEEEEEEEecC--CCCCCceeEEEecCCC-----------CCccchh----hhhhHHHHcCeEEEEeC
Confidence 34455555665443332221111 1122466899999976 3334443 13446778999999944
Q ss_pred CCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 720 TTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 720 ~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
+ .|.|........ ...-.+-...++.|.+.-.++ +++.++|||.|+-.|+.++...| ..++++++|+
T Consensus 70 ~---PGf~~t~~~~~~-~~~n~er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 70 Y---PGFGFTPGYPDQ-QYTNEERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred C---CCCCCCCCCccc-ccChHHHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 4 455544332211 111122334455566654565 79999999999999999999985 5678887764
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00021 Score=69.77 Aligned_cols=233 Identities=15% Similarity=0.198 Sum_probs=125.7
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecC--CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI 240 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSP--DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 240 (954)
..|.|..+...+.....-.|++ +.+.+-.+.|.- -|..||-++. ...+.++.-++|.-.++.....
T Consensus 33 ~tVkIf~v~~n~~s~ll~~L~G--h~GPVwqv~wahPk~G~iLAScsY---------DgkVIiWke~~g~w~k~~e~~~- 100 (299)
T KOG1332|consen 33 GTVKIFEVRNNGQSKLLAELTG--HSGPVWKVAWAHPKFGTILASCSY---------DGKVIIWKEENGRWTKAYEHAA- 100 (299)
T ss_pred ccEEEEEEcCCCCceeeeEecC--CCCCeeEEeecccccCcEeeEeec---------CceEEEEecCCCchhhhhhhhh-
Confidence 4677777755432112223333 223677777865 7888887763 4566666666665444432221
Q ss_pred cccccccceeEecCC--eEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEE
Q 002194 241 YLNAIFDNFVWVNNS--TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (954)
Q Consensus 241 ~~~~~~~~~~wspDG--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~ 318 (954)
..+.+.+++|.|.+ -.|+++ +.+ +.-.|..
T Consensus 101 -h~~SVNsV~wapheygl~Laca---------------------sSD--------------------------G~vsvl~ 132 (299)
T KOG1332|consen 101 -HSASVNSVAWAPHEYGLLLACA---------------------SSD--------------------------GKVSVLT 132 (299)
T ss_pred -hcccceeecccccccceEEEEe---------------------eCC--------------------------CcEEEEE
Confidence 22336788899875 455655 222 2223444
Q ss_pred EEeC-C-ceeEcCCC--ccccccccCCC---C-----------cEEEEEeecCCcccccccCCCCcceEEEeccCceEEE
Q 002194 319 VSLD-G-TVKEIGPP--AVYTSLDPSPD---E-----------KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE 380 (954)
Q Consensus 319 ~~~~-G-~~~~l~~~--~~~~~~~~SpD---G-----------k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~ 380 (954)
++.+ | ....+..- -++.+++|.|- | |+++... -++.+.||+.+.+..+.
T Consensus 133 ~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG-------------cDn~VkiW~~~~~~w~~ 199 (299)
T KOG1332|consen 133 YDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG-------------CDNLVKIWKFDSDSWKL 199 (299)
T ss_pred EcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC-------------CccceeeeecCCcchhh
Confidence 4444 3 22333222 56778888886 5 2232222 23367788777532111
Q ss_pred eccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCC--CceEEeeccccc
Q 002194 381 LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE--GPEILHKLDLRY 458 (954)
Q Consensus 381 l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~--~~~~l~~~~~~~ 458 (954)
-. .+.++...+|.++|.|.-..-...+. ..+..+.+++|..+ .+++ +.+.|......+
T Consensus 200 e~----------~l~~H~dwVRDVAwaP~~gl~~s~iA---------S~SqDg~viIwt~~-~e~e~wk~tll~~f~~~~ 259 (299)
T KOG1332|consen 200 ER----------TLEGHKDWVRDVAWAPSVGLPKSTIA---------SCSQDGTVIIWTKD-EEYEPWKKTLLEEFPDVV 259 (299)
T ss_pred hh----------hhhhcchhhhhhhhccccCCCceeeE---------EecCCCcEEEEEec-CccCcccccccccCCcce
Confidence 11 12233456788999996532222211 11334455555531 1222 224445555567
Q ss_pred CceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 459 GGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 459 ~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
..++||.-|..|+.+..++. ..||.=+.++
T Consensus 260 w~vSWS~sGn~LaVs~GdNk--vtlwke~~~G 289 (299)
T KOG1332|consen 260 WRVSWSLSGNILAVSGGDNK--VTLWKENVDG 289 (299)
T ss_pred EEEEEeccccEEEEecCCcE--EEEEEeCCCC
Confidence 88999999999988765443 6788777665
|
|
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.8e-06 Score=84.21 Aligned_cols=179 Identities=15% Similarity=0.117 Sum_probs=108.7
Q ss_pred eEEEEEEcCCCeEEEEEEEcCC-CCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 639 KELIKYQRKDGVQLSATLYLPP-GYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~-~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
-.+..+++.||-+|...+..-. +..+++ .-+||.+-|.. +|...+- ...=++.||.|+.
T Consensus 214 G~R~kiks~dgneiDtmF~d~r~n~~~ng---q~LvIC~EGNA---------------GFYEvG~--m~tP~~lgYsvLG 273 (517)
T KOG1553|consen 214 GQRLKIKSSDGNEIDTMFLDGRPNQSGNG---QDLVICFEGNA---------------GFYEVGV--MNTPAQLGYSVLG 273 (517)
T ss_pred CeEEEEeecCCcchhheeecCCCCCCCCC---ceEEEEecCCc---------------cceEeee--ecChHHhCceeec
Confidence 4567888899999887666422 212222 34666666631 1222221 1123678999998
Q ss_pred cCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC
Q 002194 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~ 797 (954)
....|++.+.+- .+..+..+-+.+++++.+..-...++.|.++|+|-||+-++|+|..+|+ ++|+|+.+.+=|..
T Consensus 274 ---wNhPGFagSTG~-P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDll 348 (517)
T KOG1553|consen 274 ---WNHPGFAGSTGL-PYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLL 348 (517)
T ss_pred ---cCCCCccccCCC-CCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhh
Confidence 334454444332 1223344455677888888755567889999999999999999999987 89999988653322
Q ss_pred CCCCCCccccchhhh-----cHHHHHhcCcccccCCCCCCEEEEEeCCCCCCC
Q 002194 798 LTPFGFQNEDRTLWE-----ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG 845 (954)
Q Consensus 798 ~~~~~~~~~~~~~~~-----~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~ 845 (954)
... .. .....|. ....+...+....+.+.+.|+++|--++|+++.
T Consensus 349 pLA--l~-rMP~~~~giV~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIit 398 (517)
T KOG1553|consen 349 PLA--LF-RMPTFFSGIVEHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIIT 398 (517)
T ss_pred hHH--hh-hchHHHHHHHHHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhh
Confidence 111 00 0111121 122233333344556678999999999998764
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0014 Score=82.49 Aligned_cols=126 Identities=12% Similarity=0.084 Sum_probs=68.4
Q ss_pred cccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccC--CccccccccCccceeeccCCCC
Q 002194 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI--PIAFNSVRKGMRSINWRSDKPS 412 (954)
Q Consensus 335 ~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~--p~~~~~~~~g~~~~~wspDg~~ 412 (954)
..++++|++..|+++... ...|++|+..++....+......... ..........+..++|+|||+.
T Consensus 686 ~gVa~dp~~g~LyVad~~------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~ 753 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAG------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKE 753 (1057)
T ss_pred eEEEEecCCCeEEEEECC------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCE
Confidence 357889976666655422 23788999887665544321100000 0000011234567999999987
Q ss_pred ceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecc----------------------cccCceeeccCCceE
Q 002194 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD----------------------LRYGGISWCDDSLAL 470 (954)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~----------------------~~~~~~~~spDg~~l 470 (954)
|++. + ...+.|++++. +++....+...+ ....++++++||. |
T Consensus 754 LYVA-D-----------s~n~~Irv~D~---~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-L 817 (1057)
T PLN02919 754 LYIA-D-----------SESSSIRALDL---KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-I 817 (1057)
T ss_pred EEEE-E-----------CCCCeEEEEEC---CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-E
Confidence 6554 2 22457888885 333332222110 1234678999997 3
Q ss_pred EEEEeccccceEEEEEcCCCC
Q 002194 471 VYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~~ 491 (954)
|.++..+ .+|.++|.+++
T Consensus 818 -YVADs~N--~rIrviD~~tg 835 (1057)
T PLN02919 818 -YVADSYN--HKIKKLDPATK 835 (1057)
T ss_pred -EEEECCC--CEEEEEECCCC
Confidence 3333333 56888888775
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.5e-05 Score=73.16 Aligned_cols=226 Identities=14% Similarity=0.173 Sum_probs=129.9
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
+.|+|.++.+.+ ..+.+..+........++||+.-..++++.. ++|..+||-..... .+.+........
T Consensus 38 G~L~ile~~~~~---gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~------GDGSLrl~d~~~~s-~Pi~~~kEH~~E- 106 (311)
T KOG0277|consen 38 GRLFILEVTDPK---GIQECQSYDTEDGLFDVAWSENHENQVIAAS------GDGSLRLFDLTMPS-KPIHKFKEHKRE- 106 (311)
T ss_pred ceEEEEecCCCC---CeEEEEeeecccceeEeeecCCCcceEEEEe------cCceEEEeccCCCC-cchhHHHhhhhh-
Confidence 578998885222 1222222222235788999999888888764 55666666522212 222222222222
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeC
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD 322 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~ 322 (954)
+.++.|.+-.+.++.++ .+| ++-.||.-+..
T Consensus 107 ---V~Svdwn~~~r~~~lts---------------------------------------SWD-------~TiKLW~~~r~ 137 (311)
T KOG0277|consen 107 ---VYSVDWNTVRRRIFLTS---------------------------------------SWD-------GTIKLWDPNRP 137 (311)
T ss_pred ---eEEeccccccceeEEee---------------------------------------ccC-------CceEeecCCCC
Confidence 66888987766666551 112 33445544443
Q ss_pred CceeEcCCC-ccccccccCCC-CcEEEEEeecCCcccccccCCCCcceEEEecc--CceEEEeccCCCcccCCccccccc
Q 002194 323 GTVKEIGPP-AVYTSLDPSPD-EKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVR 398 (954)
Q Consensus 323 G~~~~l~~~-~~~~~~~~SpD-Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~~~~l~~~~~~~~~p~~~~~~~ 398 (954)
..++..... ..+....|||- +..++..+.+ +.+.+||++ |+... +..+.
T Consensus 138 ~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd-------------~~l~lwdvr~~gk~~~-i~ah~------------- 190 (311)
T KOG0277|consen 138 NSVQTFNGHNSCIYQAAFSPHIPNLFASASGD-------------GTLRLWDVRSPGKFMS-IEAHN------------- 190 (311)
T ss_pred cceEeecCCccEEEEEecCCCCCCeEEEccCC-------------ceEEEEEecCCCceeE-EEecc-------------
Confidence 334444444 66778899994 5566666633 378899987 33322 32221
Q ss_pred cCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccc
Q 002194 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT 478 (954)
Q Consensus 399 ~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~ 478 (954)
.......|+.=...+++. + +..+.|+.||+.... .....|..+...++.+.|||-...|+.+...+-
T Consensus 191 ~Eil~cdw~ky~~~vl~T-----g-------~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 191 SEILCCDWSKYNHNVLAT-----G-------GVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred ceeEeecccccCCcEEEe-----c-------CCCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhccccc
Confidence 112345687766666665 1 335578888862111 123455677788899999999888877777663
Q ss_pred cceEEEEEcCC
Q 002194 479 RRTRTWVISPG 489 (954)
Q Consensus 479 ~~~~l~~~d~~ 489 (954)
. .+||.....
T Consensus 258 T-~riw~~~~~ 267 (311)
T KOG0277|consen 258 T-VRIWDPERQ 267 (311)
T ss_pred e-EEecccccc
Confidence 2 667765533
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0019 Score=72.04 Aligned_cols=120 Identities=15% Similarity=0.091 Sum_probs=71.4
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc--Cce-EEEeccCCCcccCCccccccccCccceeecc
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRS 408 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wsp 408 (954)
..+...+.||||.+|++.+-. ++.+|.+. ... .+.+...+.. ......+.|+-
T Consensus 383 ~nIs~~aiSPdg~~Ia~st~~--------------~~~iy~L~~~~~vk~~~v~~~~~~----------~~~a~~i~fti 438 (691)
T KOG2048|consen 383 ENISCAAISPDGNLIAISTVS--------------RTKIYRLQPDPNVKVINVDDVPLA----------LLDASAISFTI 438 (691)
T ss_pred cceeeeccCCCCCEEEEeecc--------------ceEEEEeccCcceeEEEeccchhh----------hccceeeEEEe
Confidence 667788999999999998833 44455544 311 1222222211 12335688999
Q ss_pred CCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEee--cccccCceeeccCCceEEEEEeccccceEEEEE
Q 002194 409 DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 409 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (954)
|+..+++.. . ....+..++++.-+..+...+.. ....+..+.-||||.+|+..+.. ..|+++
T Consensus 439 d~~k~~~~s--~----------~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~----g~I~v~ 502 (691)
T KOG2048|consen 439 DKNKLFLVS--K----------NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR----GQIFVY 502 (691)
T ss_pred cCceEEEEe--c----------ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc----ceEEEE
Confidence 999887762 0 12245566541112222222221 23345678899999999998633 458999
Q ss_pred cCCCC
Q 002194 487 SPGSK 491 (954)
Q Consensus 487 d~~~~ 491 (954)
++.+.
T Consensus 503 nl~~~ 507 (691)
T KOG2048|consen 503 NLETL 507 (691)
T ss_pred Ecccc
Confidence 98885
|
|
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.9e-05 Score=86.20 Aligned_cols=109 Identities=9% Similarity=-0.059 Sum_probs=73.1
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH--CCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA--RGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEA 745 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~ 745 (954)
.|++|++||.... + .+..+.......|.. ..|.|++ .|..|+|.+... ..+.....+++.+
T Consensus 41 ~ptvIlIHG~~~s---------~---~~~~w~~~l~~al~~~~~d~nVI~---VDw~g~g~s~y~~a~~~t~~vg~~la~ 105 (442)
T TIGR03230 41 TKTFIVIHGWTVT---------G---MFESWVPKLVAALYEREPSANVIV---VDWLSRAQQHYPTSAAYTKLVGKDVAK 105 (442)
T ss_pred CCeEEEECCCCcC---------C---cchhhHHHHHHHHHhccCCCEEEE---EECCCcCCCCCccccccHHHHHHHHHH
Confidence 4889999995311 0 011112122333332 3699999 555566655332 1222344567778
Q ss_pred HHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 746 av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
.+++|.+...++.+++.|+|||+||.+|..++.+.|+++..++.+.|+
T Consensus 106 lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPA 153 (442)
T TIGR03230 106 FVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPA 153 (442)
T ss_pred HHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence 888887654467789999999999999999999999999999999875
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.8e-05 Score=75.56 Aligned_cols=123 Identities=18% Similarity=0.156 Sum_probs=88.4
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC--------CcccEEEEeccCCCCCCCCCCCccccchhhhcH
Q 002194 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP--------HLFCCGIARSGAYNRTLTPFGFQNEDRTLWEAT 814 (954)
Q Consensus 743 ~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p--------~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (954)
+....+|+++++--| +|+|+|.|+.|+..+++... ..|+-+|.++|+.-...
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~---------------- 151 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSK---------------- 151 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcc----------------
Confidence 455667788887777 89999999999999988211 13688888888532110
Q ss_pred HHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 815 STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 815 ~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
.+.-..+...+++|.|-|.|+.|.+|| ...+..|++..... ..+..|+ ||.+-. .....+.|.+||
T Consensus 152 ----~~~~~~~~~~i~~PSLHi~G~~D~iv~--~~~s~~L~~~~~~a----~vl~Hpg-gH~VP~---~~~~~~~i~~fi 217 (230)
T KOG2551|consen 152 ----KLDESAYKRPLSTPSLHIFGETDTIVP--SERSEQLAESFKDA----TVLEHPG-GHIVPN---KAKYKEKIADFI 217 (230)
T ss_pred ----hhhhhhhccCCCCCeeEEecccceeec--chHHHHHHHhcCCC----eEEecCC-CccCCC---chHHHHHHHHHH
Confidence 000112234578999999999999998 88899999998766 5555665 998743 236678899999
Q ss_pred HHhcc
Q 002194 895 QKYCV 899 (954)
Q Consensus 895 ~~~l~ 899 (954)
+..+.
T Consensus 218 ~~~~~ 222 (230)
T KOG2551|consen 218 QSFLQ 222 (230)
T ss_pred HHHHH
Confidence 88764
|
|
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2e-05 Score=78.60 Aligned_cols=124 Identities=20% Similarity=0.235 Sum_probs=80.7
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEE
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILG 717 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~ 717 (954)
.+.+.+++.++ ++..++-+|.. + .-|++++.|||..... .|. .++..+.+ --..|++
T Consensus 50 kedv~i~~~~~-t~n~Y~t~~~~----t--~gpil~l~HG~G~S~L-----------SfA----~~a~el~s~~~~r~~a 107 (343)
T KOG2564|consen 50 KEDVSIDGSDL-TFNVYLTLPSA----T--EGPILLLLHGGGSSAL-----------SFA----IFASELKSKIRCRCLA 107 (343)
T ss_pred ccccccCCCcc-eEEEEEecCCC----C--CccEEEEeecCcccch-----------hHH----HHHHHHHhhcceeEEE
Confidence 45666666554 67777777752 1 3699999999742211 121 23334443 3566788
Q ss_pred cCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC--CCcccEEEEec
Q 002194 718 GPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARS 791 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~ 791 (954)
+|.+|+|+.... .-..+....|+.+.++++... .+.+|.++||||||.++.+.+... |. +.+++.+.
T Consensus 108 ---~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~viD 179 (343)
T KOG2564|consen 108 ---LDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVID 179 (343)
T ss_pred ---eeccccCccccCChhhcCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhhhchh-hhceEEEE
Confidence 788899987442 222456789999888887533 345799999999999998887653 44 55555543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00093 Score=69.62 Aligned_cols=248 Identities=16% Similarity=0.090 Sum_probs=125.7
Q ss_pred ceEEEEccCCCCCCcee-eeecCCCCC-cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 164 GIGIHQLFPDGKLGQEI-EIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~-~lt~~~~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
-++++|..+ ++.. .+. .+.+. ...+-.|||||++|+.+.. ....+..-|-++|+.. ..+++-..+..+
T Consensus 29 ~~~v~D~~~----g~~~~~~~-a~~gRHFyGHg~fs~dG~~LytTEn----d~~~g~G~IgVyd~~~-~~~ri~E~~s~G 98 (305)
T PF07433_consen 29 FALVFDCRT----GQLLQRLW-APPGRHFYGHGVFSPDGRLLYTTEN----DYETGRGVIGVYDAAR-GYRRIGEFPSHG 98 (305)
T ss_pred EEEEEEcCC----CceeeEEc-CCCCCEEecCEEEcCCCCEEEEecc----ccCCCcEEEEEEECcC-CcEEEeEecCCC
Confidence 456767643 3333 333 23333 6678899999997766542 2355677888889873 344454333322
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
+ ....+.|.|||+.|+++ +.+.. ..+..++. +...-.....|..+|.
T Consensus 99 I--GPHel~l~pDG~tLvVA---NGGI~-----------Thpd~GR~-----------------kLNl~tM~psL~~ld~ 145 (305)
T PF07433_consen 99 I--GPHELLLMPDGETLVVA---NGGIE-----------THPDSGRA-----------------KLNLDTMQPSLVYLDA 145 (305)
T ss_pred c--ChhhEEEcCCCCEEEEE---cCCCc-----------cCcccCce-----------------ecChhhcCCceEEEec
Confidence 1 02378899999888877 11110 00000000 0000013456888887
Q ss_pred -CCce-eE--cCCC---ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccc
Q 002194 322 -DGTV-KE--IGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAF 394 (954)
Q Consensus 322 -~G~~-~~--l~~~---~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~ 394 (954)
+|++ .+ +... -.+..+++++||.-+.-.....+.... ..-+.+++.. +..+.+.. +... .
T Consensus 146 ~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~------~PLva~~~~g-~~~~~~~~-p~~~-----~ 212 (305)
T PF07433_consen 146 RSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDA------PPLVALHRRG-GALRLLPA-PEEQ-----W 212 (305)
T ss_pred CCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCcc------CCeEEEEcCC-CcceeccC-ChHH-----H
Confidence 8853 33 4322 578899999999765544433221110 1122222222 11222221 1110 1
Q ss_pred cccccCccceeeccCCCCceEEEEeccCCCccccccC-CCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEE
Q 002194 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTP-RDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYE 473 (954)
Q Consensus 395 ~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~ 473 (954)
......+.++++++||..++.. +. .+.+.+|+. .++...... .-.++.+++-.+++ ++.+
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~t-------------sPrGg~~~~~d~---~tg~~~~~~-~l~D~cGva~~~~~--f~~s 273 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVT-------------SPRGGRVAVWDA---ATGRLLGSV-PLPDACGVAPTDDG--FLVS 273 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEE-------------CCCCCEEEEEEC---CCCCEeecc-ccCceeeeeecCCc--eEEe
Confidence 1223455789999999987776 22 346778875 444332221 12234556666666 3332
Q ss_pred EeccccceEEEEEcCCC
Q 002194 474 SWYKTRRTRTWVISPGS 490 (954)
Q Consensus 474 ~~~~~~~~~l~~~d~~~ 490 (954)
+. ...++.++..+
T Consensus 274 sG----~G~~~~~~~~~ 286 (305)
T PF07433_consen 274 SG----QGQLIRLSPDG 286 (305)
T ss_pred CC----CccEEEccCcc
Confidence 21 13466665544
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00089 Score=66.35 Aligned_cols=184 Identities=11% Similarity=0.069 Sum_probs=107.7
Q ss_pred eeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCC
Q 002194 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (954)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~ 273 (954)
....-|.++++. +.....+.+||+++|+.......+.. +..+.|+.+|.++++++...-+.
T Consensus 58 ~Did~~s~~liT---------GSAD~t~kLWDv~tGk~la~~k~~~~-----Vk~~~F~~~gn~~l~~tD~~mg~----- 118 (327)
T KOG0643|consen 58 CDIDWDSKHLIT---------GSADQTAKLWDVETGKQLATWKTNSP-----VKRVDFSFGGNLILASTDKQMGY----- 118 (327)
T ss_pred EEecCCcceeee---------ccccceeEEEEcCCCcEEEEeecCCe-----eEEEeeccCCcEEEEEehhhcCc-----
Confidence 333345677766 33466677778888887655444432 66889999999988873321111
Q ss_pred CCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C------C-c-eeEcCCC-ccccccccCCCC
Q 002194 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D------G-T-VKEIGPP-AVYTSLDPSPDE 343 (954)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~------G-~-~~~l~~~-~~~~~~~~SpDG 343 (954)
...|..+++ + + + ...|..+ ..++..-|+|-|
T Consensus 119 ---------------------------------------~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 119 ---------------------------------------TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred ---------------------------------------ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence 112333333 1 1 2 3334444 677888999999
Q ss_pred cEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002194 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (954)
Q Consensus 344 k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~ 422 (954)
+.|++.-.. +.|.+||+.++. ...-.. . +...+.++.+|||... |.+..
T Consensus 160 ~~ii~Ghe~-------------G~is~~da~~g~~~v~s~~-~-----------h~~~Ind~q~s~d~T~--FiT~s--- 209 (327)
T KOG0643|consen 160 ETIIAGHED-------------GSISIYDARTGKELVDSDE-E-----------HSSKINDLQFSRDRTY--FITGS--- 209 (327)
T ss_pred CEEEEecCC-------------CcEEEEEcccCceeeechh-h-----------hccccccccccCCcce--EEecc---
Confidence 999987633 388899998653 222111 0 1134567899999973 33222
Q ss_pred CCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEec
Q 002194 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (954)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 476 (954)
......++|. ..-+...-...+..++..+++|--..++.....
T Consensus 210 --------~Dttakl~D~---~tl~v~Kty~te~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 210 --------KDTTAKLVDV---RTLEVLKTYTTERPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred --------cCccceeeec---cceeeEEEeeecccccceecccccceEEecCCc
Confidence 2223445554 222222223345667888999987777776433
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=9e-05 Score=77.47 Aligned_cols=213 Identities=13% Similarity=0.155 Sum_probs=128.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccc---------cccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCcee
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEE---------LARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~ 180 (954)
.+....|-+|+++++-.+++....+|. |..+..++..+.+.-.......++.+..|.+||+.. +.. .+
T Consensus 221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-~~C--~k 297 (459)
T KOG0288|consen 221 NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-AYC--SK 297 (459)
T ss_pred CcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-hhe--ec
Confidence 466788999999998888875444443 334555555544443333333344456788888832 111 11
Q ss_pred eeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEE
Q 002194 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVC 260 (954)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~ 260 (954)
.+ ++ +..+..+.-+ ....+ + +--...|..+|..++..++..+..+. +.++.-++||..|..
T Consensus 298 t~--l~-~S~cnDI~~~---~~~~~-S-------gH~DkkvRfwD~Rs~~~~~sv~~gg~-----vtSl~ls~~g~~lLs 358 (459)
T KOG0288|consen 298 TV--LP-GSQCNDIVCS---ISDVI-S-------GHFDKKVRFWDIRSADKTRSVPLGGR-----VTSLDLSMDGLELLS 358 (459)
T ss_pred cc--cc-cccccceEec---ceeee-e-------cccccceEEEeccCCceeeEeecCcc-----eeeEeeccCCeEEee
Confidence 11 22 2245555554 22233 2 11233477778777777666555553 788999999987775
Q ss_pred EecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC------cc
Q 002194 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP------AV 333 (954)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~------~~ 333 (954)
.++ ...+-++|+ +.+++..... ..
T Consensus 359 ssR-------------------------------------------------Ddtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 359 SSR-------------------------------------------------DDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred ecC-------------------------------------------------CCceeeeecccccEEEEeeccccccccc
Confidence 521 112445666 4444443321 34
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i 413 (954)
.+.+.|||||++++..+.++ .++||++.+++...+...+.. ..++..++|+|-|+.+
T Consensus 390 wtrvvfSpd~~YvaAGS~dg-------------sv~iW~v~tgKlE~~l~~s~s----------~~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADG-------------SVYIWSVFTGKLEKVLSLSTS----------NAAITSLSWNPSGSGL 446 (459)
T ss_pred cceeEECCCCceeeeccCCC-------------cEEEEEccCceEEEEeccCCC----------CcceEEEEEcCCCchh
Confidence 56789999999999988543 899999998877655443322 1356789999999876
Q ss_pred eEE
Q 002194 414 LYW 416 (954)
Q Consensus 414 ~~~ 416 (954)
+-.
T Consensus 447 lsa 449 (459)
T KOG0288|consen 447 LSA 449 (459)
T ss_pred hcc
Confidence 554
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.2e-05 Score=80.64 Aligned_cols=149 Identities=19% Similarity=0.067 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcE-EEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC-------------------CC
Q 002194 738 QLVACAEAAVEEVVRRGVAHPSKI-AVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-------------------RT 797 (954)
Q Consensus 738 ~~~~D~~~av~~l~~~~~~d~~ri-~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~-------------------~~ 797 (954)
..+.|...+-+.|.+.-.| +++ +|+|.||||+.|+..+..+|+++..+|.++.... ..
T Consensus 127 ~ti~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~ 204 (368)
T COG2021 127 ITIRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADPD 204 (368)
T ss_pred ccHHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCCC
Confidence 4478888888888776445 354 5999999999999999999999988888775311 00
Q ss_pred C-----CCCCCcccc--------------------chhhh--------------cHHHH---------------------
Q 002194 798 L-----TPFGFQNED--------------------RTLWE--------------ATSTY--------------------- 817 (954)
Q Consensus 798 ~-----~~~~~~~~~--------------------~~~~~--------------~~~~~--------------------- 817 (954)
. +. +...+. ..++. ..+.|
T Consensus 205 ~n~G~Y~~-~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt 283 (368)
T COG2021 205 WNGGDYYE-GTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLT 283 (368)
T ss_pred ccCCCccC-CCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 0 00 000000 00000 11111
Q ss_pred ---HhcCccc-------ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC-CCCCcCCCcccHHHH
Q 002194 818 ---VEMSPFM-------SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP-FESHGYAARESIMHV 886 (954)
Q Consensus 818 ---~~~sp~~-------~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~H~~~~~~~~~~~ 886 (954)
..+++-. .+++++.|+|++.-+.|...| +++.+++.++|+..++ +++++ ..||.-... ....+
T Consensus 284 ~ald~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp--~~~~~~~~~~L~~~~~---~~~i~S~~GHDaFL~-e~~~~ 357 (368)
T COG2021 284 RALDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFP--PELQRALAEALPAAGA---LREIDSPYGHDAFLV-ESEAV 357 (368)
T ss_pred HHHHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCC--HHHHHHHHHhccccCc---eEEecCCCCchhhhc-chhhh
Confidence 1122222 267789999999999999999 9999999999998865 54444 468864322 22334
Q ss_pred HHHHHHHHH
Q 002194 887 LWETDRWLQ 895 (954)
Q Consensus 887 ~~~i~~fl~ 895 (954)
...|..||.
T Consensus 358 ~~~i~~fL~ 366 (368)
T COG2021 358 GPLIRKFLA 366 (368)
T ss_pred hHHHHHHhh
Confidence 455666654
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.8e-05 Score=77.65 Aligned_cols=229 Identities=15% Similarity=0.151 Sum_probs=136.3
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC-CceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~~~~~~ 241 (954)
..|++||..+ |+. .+-|.++++ .+..++++.-|+.|+-++. ...+.++|.++ -+.++.-..++.
T Consensus 130 ~tikv~D~~t-g~~--e~~LrGHt~--sv~di~~~a~Gk~l~tcSs---------Dl~~~LWd~~~~~~c~ks~~gh~h- 194 (406)
T KOG0295|consen 130 ATIKVFDTET-GEL--ERSLRGHTD--SVFDISFDASGKYLATCSS---------DLSAKLWDFDTFFRCIKSLIGHEH- 194 (406)
T ss_pred ceEEEEEccc-hhh--hhhhhcccc--ceeEEEEecCccEEEecCC---------ccchhheeHHHHHHHHHHhcCccc-
Confidence 4799999854 433 455666554 4888999999999998763 22244445444 122222222222
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
+++.+.+-|-|..|+.... ...|..+++
T Consensus 195 ---~vS~V~f~P~gd~ilS~sr-------------------------------------------------D~tik~We~ 222 (406)
T KOG0295|consen 195 ---GVSSVFFLPLGDHILSCSR-------------------------------------------------DNTIKAWEC 222 (406)
T ss_pred ---ceeeEEEEecCCeeeeccc-------------------------------------------------ccceeEEec
Confidence 2778889999988875511 122445555
Q ss_pred -CC-ceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEe-ccCCCcccCCcccccc
Q 002194 322 -DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL-CDLPLAEDIPIAFNSV 397 (954)
Q Consensus 322 -~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l-~~~~~~~~~p~~~~~~ 397 (954)
+| ....+... ..+..+..+-||..++..+++ +.+.+|-+.+++.+.+ ..++..
T Consensus 223 ~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d-------------qtl~vW~~~t~~~k~~lR~hEh~---------- 279 (406)
T KOG0295|consen 223 DTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND-------------QTLRVWVVATKQCKAELREHEHP---------- 279 (406)
T ss_pred ccceeEEeccCchHhEEEEEecCCeeEEEecCCC-------------ceEEEEEeccchhhhhhhccccc----------
Confidence 55 55666665 778888999999888877744 3888999887754332 222211
Q ss_pred ccCccceeeccCCCCceEEEE--eccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEe
Q 002194 398 RKGMRSINWRSDKPSTLYWAE--TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (954)
Q Consensus 398 ~~g~~~~~wspDg~~i~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (954)
+.-++|.|+...--..-. ..+++......+....|-.|++ ..|.-.-.|..++..+.+++|+|.|++|+..++
T Consensus 280 ---vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv--~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 280 ---VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV--STGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD 354 (406)
T ss_pred ---eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec--cCCeEEEEEecccceeeeeEEcCCCeEEEEEec
Confidence 123556665431111100 0011111122233456778886 333333455677778899999999999999887
Q ss_pred ccccceEEEEEcC
Q 002194 476 YKTRRTRTWVISP 488 (954)
Q Consensus 476 ~~~~~~~l~~~d~ 488 (954)
+++ .++|.+..
T Consensus 355 Dkt--lrvwdl~~ 365 (406)
T KOG0295|consen 355 DKT--LRVWDLKN 365 (406)
T ss_pred CCc--EEEEEecc
Confidence 765 56665543
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00011 Score=75.69 Aligned_cols=243 Identities=14% Similarity=0.114 Sum_probs=143.5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....+.|+--.++.++ +...|+++|..+|+...-..+.... +.++.++..|+.|+..+
T Consensus 110 ~vt~v~~hp~~~~v~~as---------~d~tikv~D~~tg~~e~~LrGHt~s----v~di~~~a~Gk~l~tcS------- 169 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSAS---------EDATIKVFDTETGELERSLRGHTDS----VFDISFDASGKYLATCS------- 169 (406)
T ss_pred ceeeeeeccCceEEEEec---------CCceEEEEEccchhhhhhhhccccc----eeEEEEecCccEEEecC-------
Confidence 566677788654444432 3678999999998874333333222 56888999999888661
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCC---ceeEcCCC-ccccccccCCCCcE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG---TVKEIGPP-AVYTSLDPSPDEKY 345 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G---~~~~l~~~-~~~~~~~~SpDGk~ 345 (954)
.+ -.+.++|.+. ..+.+... ..+..+.|-|-|.+
T Consensus 170 --------------sD----------------------------l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ 207 (406)
T KOG0295|consen 170 --------------SD----------------------------LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDH 207 (406)
T ss_pred --------------Cc----------------------------cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCe
Confidence 11 0122333322 22333333 67788999999999
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
|+..+.+. .|..|+++++.. +.+..+ +..++.+.-+-||..++--
T Consensus 208 ilS~srD~-------------tik~We~~tg~cv~t~~~h-------------~ewvr~v~v~~DGti~As~-------- 253 (406)
T KOG0295|consen 208 ILSCSRDN-------------TIKAWECDTGYCVKTFPGH-------------SEWVRMVRVNQDGTIIASC-------- 253 (406)
T ss_pred eeeccccc-------------ceeEEecccceeEEeccCc-------------hHhEEEEEecCCeeEEEec--------
Confidence 98877443 789999997643 444332 2456677778888644433
Q ss_pred ccccccCCCeEEEEecCCCCCCC-ceEEeecccccCceeeccCC---------------ceEEEEEeccccceEEEEEcC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDS---------------LALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spDg---------------~~l~~~~~~~~~~~~l~~~d~ 488 (954)
+....|.+|-. ++++ ...+..++..+.-++|.|+. ..++..++++. |-.+|+
T Consensus 254 -----s~dqtl~vW~~---~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt----Ik~wdv 321 (406)
T KOG0295|consen 254 -----SNDQTLRVWVV---ATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT----IKIWDV 321 (406)
T ss_pred -----CCCceEEEEEe---ccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce----EEEEec
Confidence 33456666664 3332 22334445555555554432 23444433332 444455
Q ss_pred CCCCCCcEEEe--cCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEE
Q 002194 489 GSKDVAPRILF--DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566 (954)
Q Consensus 489 ~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 566 (954)
.++ ..++ ......+.+ ++|+|.|++|+.... ...|.+||++.+....
T Consensus 322 ~tg----~cL~tL~ghdnwVr~------~af~p~Gkyi~ScaD---------------------Dktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 322 STG----MCLFTLVGHDNWVRG------VAFSPGGKYILSCAD---------------------DKTLRVWDLKNLQCMK 370 (406)
T ss_pred cCC----eEEEEEecccceeee------eEEcCCCeEEEEEec---------------------CCcEEEEEeccceeee
Confidence 554 2332 233333444 889999999988762 2349999999888776
Q ss_pred EeccC
Q 002194 567 IWESD 571 (954)
Q Consensus 567 l~~~~ 571 (954)
.+...
T Consensus 371 ~~~ah 375 (406)
T KOG0295|consen 371 TLEAH 375 (406)
T ss_pred ccCCC
Confidence 66533
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00033 Score=75.77 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHH----cCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEec-cCCCCCC------CCCC-Ccc---
Q 002194 741 ACAEAAVEEVVR----RGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS-GAYNRTL------TPFG-FQN--- 805 (954)
Q Consensus 741 ~D~~~av~~l~~----~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~-~~~~~~~------~~~~-~~~--- 805 (954)
.-+..|++.+.+ ...++.++..|.|.|-=|..+..+++.+ +|++|+|.+. .+.|+.. ..++ .+.
T Consensus 150 ka~vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa~D-~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~ 228 (367)
T PF10142_consen 150 KAAVRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAAVD-PRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAF 228 (367)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhccC-cceeEEeeEEEccCCcHHHHHHHHHHhCCCCccch
Confidence 334444444433 3456778999999999999999888866 7888888764 3333211 0111 110
Q ss_pred -----ccchhh----hcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 002194 806 -----EDRTLW----EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876 (954)
Q Consensus 806 -----~~~~~~----~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 876 (954)
+.-..+ +-.+...-.+|+.+.++++.|-|||.|..|+... ++.+.-++..|+. ++.+..+|+++|.
T Consensus 229 ~dY~~~gi~~~l~tp~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~--pD~~~~y~d~L~G---~K~lr~vPN~~H~ 303 (367)
T PF10142_consen 229 QDYYNEGITQQLDTPEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFV--PDSSNFYYDKLPG---EKYLRYVPNAGHS 303 (367)
T ss_pred hhhhHhCchhhcCCHHHHHHHHhcCHHHHHHhcCccEEEEecCCCceec--cCchHHHHhhCCC---CeeEEeCCCCCcc
Confidence 000000 0112334568999999999999999999999987 8999999999875 4788999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhcccCC
Q 002194 877 YAARESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 877 ~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
... ....+.+..|+...+...+
T Consensus 304 ~~~----~~~~~~l~~f~~~~~~~~~ 325 (367)
T PF10142_consen 304 LIG----SDVVQSLRAFYNRIQNGRP 325 (367)
T ss_pred cch----HHHHHHHHHHHHHHHcCCC
Confidence 864 5677889999998765543
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0018 Score=81.50 Aligned_cols=126 Identities=11% Similarity=0.036 Sum_probs=70.4
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCc--c-cCCc------cccccccCccce
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLA--E-DIPI------AFNSVRKGMRSI 404 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~--~-~~p~------~~~~~~~g~~~~ 404 (954)
..+++++|||++|+++... ...|.+||++++..+.+...... . ...+ ........+..+
T Consensus 742 P~GIavspdG~~LYVADs~------------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSE------------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred ccEEEEeCCCCEEEEEECC------------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 3467899999988776533 23899999886554433321100 0 0000 000111234578
Q ss_pred eeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecc--------------cccCceeeccCCceE
Q 002194 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--------------LRYGGISWCDDSLAL 470 (954)
Q Consensus 405 ~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~--------------~~~~~~~~spDg~~l 470 (954)
++++||+ +|.++ ...+.|.+++. +++....+.... ....++++++||+ |
T Consensus 810 avd~dG~--LYVAD-----------s~N~rIrviD~---~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-l 872 (1057)
T PLN02919 810 LCAKDGQ--IYVAD-----------SYNHKIKKLDP---ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-L 872 (1057)
T ss_pred eEeCCCc--EEEEE-----------CCCCEEEEEEC---CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-E
Confidence 8999996 34433 23557888885 455444432211 1345689999997 4
Q ss_pred EEEEeccccceEEEEEcCCCC
Q 002194 471 VYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+ .++..+ .+|.++++.++
T Consensus 873 y-VaDt~N--n~Irvid~~~~ 890 (1057)
T PLN02919 873 F-VADTNN--SLIRYLDLNKG 890 (1057)
T ss_pred E-EEECCC--CEEEEEECCCC
Confidence 3 334333 46888888775
|
|
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0001 Score=77.63 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=47.6
Q ss_pred cEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEec
Q 002194 713 FAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (954)
|.|+. .+..|+|.+. .. ........++... .+.-.. .++.++|||+||.++..++.++|++++++|.++
T Consensus 51 ~~~~~---~d~~g~g~s~-~~~~~~~~~~~~~~~~----~~~~~~--~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~ 120 (282)
T COG0596 51 YRVIA---PDLRGHGRSD-PAGYSLSAYADDLAAL----LDALGL--EKVVLVGHSMGGAVALALALRHPDRVRGLVLIG 120 (282)
T ss_pred eEEEE---ecccCCCCCC-cccccHHHHHHHHHHH----HHHhCC--CceEEEEecccHHHHHHHHHhcchhhheeeEec
Confidence 88888 5556777774 10 0111113333333 332222 349999999999999999999999999999888
Q ss_pred cC
Q 002194 792 GA 793 (954)
Q Consensus 792 ~~ 793 (954)
+.
T Consensus 121 ~~ 122 (282)
T COG0596 121 PA 122 (282)
T ss_pred CC
Confidence 54
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00013 Score=79.85 Aligned_cols=222 Identities=12% Similarity=0.105 Sum_probs=120.9
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecC-CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
+.|-|++++..|.+-. ..+.++-.+..+....|.| |..+||... +++..+||.+.+.|+.....|....-.
T Consensus 603 G~iai~el~~PGrLPD-gv~p~l~Ngt~vtDl~WdPFD~~rLAVa~-------ddg~i~lWr~~a~gl~e~~~tPe~~lt 674 (1012)
T KOG1445|consen 603 GVIAIYELNEPGRLPD-GVMPGLFNGTLVTDLHWDPFDDERLAVAT-------DDGQINLWRLTANGLPENEMTPEKILT 674 (1012)
T ss_pred ceEEEEEcCCCCCCCc-ccccccccCceeeecccCCCChHHeeecc-------cCceEEEEEeccCCCCcccCCcceeee
Confidence 3566777765443321 2233344556888999999 888999865 567899999998776543332211100
Q ss_pred -ccccccceeEecCC-eEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEE
Q 002194 242 -LNAIFDNFVWVNNS-TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (954)
Q Consensus 242 -~~~~~~~~~wspDG-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~ 319 (954)
...-+.++.|.|=- ..|+.+ . ....|-++
T Consensus 675 ~h~eKI~slRfHPLAadvLa~a----------------------------------------s---------yd~Ti~lW 705 (1012)
T KOG1445|consen 675 IHGEKITSLRFHPLAADVLAVA----------------------------------------S---------YDSTIELW 705 (1012)
T ss_pred cccceEEEEEecchhhhHhhhh----------------------------------------h---------ccceeeee
Confidence 00003345555421 111111 1 12345566
Q ss_pred Ee-CCc-eeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccc
Q 002194 320 SL-DGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNS 396 (954)
Q Consensus 320 ~~-~G~-~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~ 396 (954)
|+ +++ ..++... +.+.+++|||||+.++.+..+ +.+++|....++ +++...++..
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD-------------g~~rVy~Prs~e-~pv~Eg~gpv-------- 763 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD-------------GTLRVYEPRSRE-QPVYEGKGPV-------- 763 (1012)
T ss_pred ehhhhhhhheeccCcCceeEEEECCCCcceeeeecC-------------ceEEEeCCCCCC-CccccCCCCc--------
Confidence 77 553 3345444 889999999999999998744 388888876443 2222222111
Q ss_pred cccCccceeeccCCCCceEE-EEeccCCCccccccCCCeEEEEecCCCCCCCceEE-eecccccCceeeccCCceEEEEE
Q 002194 397 VRKGMRSINWRSDKPSTLYW-AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 397 ~~~g~~~~~wspDg~~i~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~~~~~~~~spDg~~l~~~~ 474 (954)
....-.+.|.=||+.+++. .+. ....+|.+|+++.++++..... .+..-..--+.+.+|...|+...
T Consensus 764 -gtRgARi~wacdgr~viv~Gfdk----------~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG 832 (1012)
T KOG1445|consen 764 -GTRGARILWACDGRIVIVVGFDK----------SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG 832 (1012)
T ss_pred -cCcceeEEEEecCcEEEEecccc----------cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec
Confidence 0111248899999977765 211 2233666777533333322111 11111122356677877665554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0042 Score=66.31 Aligned_cols=145 Identities=14% Similarity=0.084 Sum_probs=80.0
Q ss_pred cceEEEEEe-CCceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccC
Q 002194 313 TTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDI 390 (954)
Q Consensus 313 ~~~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~ 390 (954)
..+|++++. +|+.+.+..+..+.+...-.++..|+... + .+++++.+.+.. +.++..... .
T Consensus 46 ~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~-~--------------g~~~~~~~~~~~~t~~~~~~~~--~ 108 (307)
T COG3386 46 GGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE-H--------------GVRLLDPDTGGKITLLAEPEDG--L 108 (307)
T ss_pred CCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc-c--------------ccEEEeccCCceeEEeccccCC--C
Confidence 356889998 78777776664444433333343444333 1 566777664444 444432211 1
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCC-CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCce
Q 002194 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG-DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (954)
Q Consensus 391 p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~ 469 (954)
+. ...+.....|||. ||+...... ....+....+.||+++. .++..+.+...-...++++|||||+.
T Consensus 109 ~~------~r~ND~~v~pdG~---~wfgt~~~~~~~~~~~~~~G~lyr~~p---~g~~~~l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 109 PL------NRPNDGVVDPDGR---IWFGDMGYFDLGKSEERPTGSLYRVDP---DGGVVRLLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred Cc------CCCCceeEcCCCC---EEEeCCCccccCccccCCcceEEEEcC---CCCEEEeecCcEEecCceEECCCCCE
Confidence 11 2234567888886 443333200 00011122347888872 44455555554555688999999998
Q ss_pred EEEEEeccccceEEEEEcCC
Q 002194 470 LVYESWYKTRRTRTWVISPG 489 (954)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~ 489 (954)
++++.... .+||+++.+
T Consensus 177 ly~aDT~~---~~i~r~~~d 193 (307)
T COG3386 177 LYVADTPA---NRIHRYDLD 193 (307)
T ss_pred EEEEeCCC---CeEEEEecC
Confidence 88875433 568888776
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.001 Score=71.94 Aligned_cols=142 Identities=11% Similarity=0.084 Sum_probs=77.5
Q ss_pred EEeCCceeE-cCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEeccCCCcccCCcccc
Q 002194 319 VSLDGTVKE-IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFN 395 (954)
Q Consensus 319 ~~~~G~~~~-l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l~~~~~~~~~p~~~~ 395 (954)
+.-+|-.+. +... ..+..++|.||...|+|.... .+++-.+.- .++-+...+.
T Consensus 131 WSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~--------------h~~IKpL~~n~k~i~WkAHD---------- 186 (737)
T KOG1524|consen 131 WSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG--------------HISIKPLAANSKIIRWRAHD---------- 186 (737)
T ss_pred EeccchHHHHHhhcCceeEEEEECCCCCceEEecCC--------------eEEEeecccccceeEEeccC----------
Confidence 333664332 3333 677889999999999998732 455544441 1111222211
Q ss_pred ccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEe
Q 002194 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (954)
Q Consensus 396 ~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (954)
+-+-.+.|++....|+-. ++.-+.-+||. .|...-.-..++..+.+++|.||..+++.+-
T Consensus 187 ---GiiL~~~W~~~s~lI~sg-------------GED~kfKvWD~---~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~- 246 (737)
T KOG1524|consen 187 ---GLVLSLSWSTQSNIIASG-------------GEDFRFKIWDA---QGANLFTSAAEEYAITSVAFNPEKDYLLWSY- 246 (737)
T ss_pred ---cEEEEeecCccccceeec-------------CCceeEEeecc---cCcccccCChhccceeeeeeccccceeeeee-
Confidence 123456788877655432 22334556773 3332222244677889999999944444332
Q ss_pred ccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 476 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+. +..-.+ ..+.++. ++||+||..++...
T Consensus 247 -nt----~R~~~p-------------~~GSifn------lsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 247 -NT----ARFSSP-------------RVGSIFN------LSWSADGTQATCGT 275 (737)
T ss_pred -ee----eeecCC-------------CccceEE------EEEcCCCceeeccc
Confidence 11 111111 1222333 89999999887765
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0024 Score=67.37 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=46.8
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceE-EEEEECCCCceeecccCCCc-
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLR-VWVADVDTGKARPLFQSPDI- 240 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~-l~~~d~~~g~~~~lt~~~~~- 240 (954)
+.++++|... ++ +.+.-+.+...++..||||+.++.....-++..+....+ |-++|..+-+.+.=...+..
T Consensus 17 ~rv~viD~d~----~k---~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~ 89 (342)
T PF06433_consen 17 SRVYVIDADS----GK---LLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP 89 (342)
T ss_dssp EEEEEEETTT----TE---EEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred ceEEEEECCC----Cc---EEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence 3688877532 22 222212234566788999999987654332222333333 45678776433221111211
Q ss_pred ccc--ccccceeEecCCeEEEEE
Q 002194 241 YLN--AIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 241 ~~~--~~~~~~~wspDG~~l~~~ 261 (954)
... .....++.|+||+++++.
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V~ 112 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYVQ 112 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEEE
T ss_pred hheecccccceEEccCCcEEEEE
Confidence 110 013477899999999976
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.7e-05 Score=80.65 Aligned_cols=166 Identities=17% Similarity=0.300 Sum_probs=99.7
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCcee-ecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
+.+..-+|+|||.-|+.+. .+|...+| .- +|-.| .+...... +...+|.|+...++|.
T Consensus 105 ~A~~~gRW~~dGtgLlt~G-------EDG~iKiW--Sr-sGMLRStl~Q~~~~-----v~c~~W~p~S~~vl~c------ 163 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAG-------EDGVIKIW--SR-SGMLRSTVVQNEES-----IRCARWAPNSNSIVFC------ 163 (737)
T ss_pred hhhhhcccCCCCceeeeec-------CCceEEEE--ec-cchHHHHHhhcCce-----eEEEEECCCCCceEEe------
Confidence 4677889999999988743 34444555 43 34333 23333332 6688999999888887
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--CC-ceeEcCCCccccccccCCCCc
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DG-TVKEIGPPAVYTSLDPSPDEK 344 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~--~G-~~~~l~~~~~~~~~~~SpDGk 344 (954)
...++++-.+ .- ..+.-..++.+-..+|+|...
T Consensus 164 --------------------------------------------~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~ 199 (737)
T KOG1524|consen 164 --------------------------------------------QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN 199 (737)
T ss_pred --------------------------------------------cCCeEEEeecccccceeEEeccCcEEEEeecCcccc
Confidence 2345666666 22 233333447778899999888
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
.|+....+ ....+||..|...-.-. ..+.| ..+++|.|| +..++|
T Consensus 200 lI~sgGED-------------~kfKvWD~~G~~Lf~S~----~~ey~---------ITSva~npd-~~~~v~-------- 244 (737)
T KOG1524|consen 200 IIASGGED-------------FRFKIWDAQGANLFTSA----AEEYA---------ITSVAFNPE-KDYLLW-------- 244 (737)
T ss_pred ceeecCCc-------------eeEEeecccCcccccCC----hhccc---------eeeeeeccc-cceeee--------
Confidence 77765422 25668887764321111 11222 367899999 543343
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEEee-cccccCceeeccCCceEEEEE
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~~~~~~~~~~spDg~~l~~~~ 474 (954)
.++. -++.. .-+.+..++||+||..++...
T Consensus 245 ------------S~nt--------~R~~~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 245 ------------SYNT--------ARFSSPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred ------------eeee--------eeecCCCccceEEEEEcCCCceeeccc
Confidence 1110 11222 234567889999999988765
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00073 Score=68.12 Aligned_cols=250 Identities=15% Similarity=0.132 Sum_probs=126.5
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
+.+++|++..+|.... +.... ....+....||-||..++. .. -..++-++|+.+++..++..+...
T Consensus 50 ~tVR~wevq~~g~~~~-ka~~~--~~~PvL~v~WsddgskVf~-g~--------~Dk~~k~wDL~S~Q~~~v~~Hd~p-- 115 (347)
T KOG0647|consen 50 GTVRIWEVQNSGQLVP-KAQQS--HDGPVLDVCWSDDGSKVFS-GG--------CDKQAKLWDLASGQVSQVAAHDAP-- 115 (347)
T ss_pred CceEEEEEecCCcccc-hhhhc--cCCCeEEEEEccCCceEEe-ec--------cCCceEEEEccCCCeeeeeecccc--
Confidence 5899999976554332 22322 2346888999999965544 32 245677779999999888765554
Q ss_pred cccccceeEecCCe--EEEEEecCCCCC-CCC-CCCCCCCCceeeccCCceeeechhh-hhccCccccccccccccceEE
Q 002194 243 NAIFDNFVWVNNST--LLVCTIPLLRGD-PPK-KPLVPLGPKMQSNEKRDIIQVRTFQ-DLLKDEYDEDLFDYYATTQLV 317 (954)
Q Consensus 243 ~~~~~~~~wspDG~--~l~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~r~~~-d~l~~~~d~~~~~~~~~~~l~ 317 (954)
+..+.|-+... .|+.. .-.... ... ....|+ ..++ .+.|-|. |.+ ++ -...-.+..+|.
T Consensus 116 ---vkt~~wv~~~~~~cl~TG-SWDKTlKfWD~R~~~pv-~t~~-------LPeRvYa~Dv~-~p---m~vVata~r~i~ 179 (347)
T KOG0647|consen 116 ---VKTCHWVPGMNYQCLVTG-SWDKTLKFWDTRSSNPV-ATLQ-------LPERVYAADVL-YP---MAVVATAERHIA 179 (347)
T ss_pred ---eeEEEEecCCCcceeEec-ccccceeecccCCCCee-eeee-------ccceeeehhcc-Cc---eeEEEecCCcEE
Confidence 77888986654 33322 111110 000 000000 0000 0111111 110 00 011111456688
Q ss_pred EEEe-CC--ceeEcCCC--ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc-e---EEEeccCCCcc
Q 002194 318 LVSL-DG--TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-F---VRELCDLPLAE 388 (954)
Q Consensus 318 ~~~~-~G--~~~~l~~~--~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~---~~~l~~~~~~~ 388 (954)
+++| ++ +.+++..+ -.++.++.-+|..-.+..+..+ .+.+..++.. . ..--++.. ..
T Consensus 180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG-------------rv~iq~id~~~~~~nFtFkCHR~-~~ 245 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG-------------RVAIQYIDDPNPKDNFTFKCHRS-TN 245 (347)
T ss_pred EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc-------------eEEEEecCCCCccCceeEEEecc-CC
Confidence 8888 54 34455554 4556667667766666655332 4444444421 1 00001100 00
Q ss_pred cCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE--eecccccCceeeccC
Q 002194 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDD 466 (954)
Q Consensus 389 ~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spD 466 (954)
. .+..-..+.+++|.|.-..++-. +..+..-.||. + ...+.. ...+..+.--+|..+
T Consensus 246 ~----~~~~VYaVNsi~FhP~hgtlvTa-------------GsDGtf~FWDk---d-ar~kLk~s~~~~qpItcc~fn~~ 304 (347)
T KOG0647|consen 246 S----VNDDVYAVNSIAFHPVHGTLVTA-------------GSDGTFSFWDK---D-ARTKLKTSETHPQPITCCSFNRN 304 (347)
T ss_pred C----CCCceEEecceEeecccceEEEe-------------cCCceEEEecc---h-hhhhhhccCcCCCccceeEecCC
Confidence 0 00111234678888855444333 44556667773 2 111222 234556677799999
Q ss_pred CceEEEEEecc
Q 002194 467 SLALVYESWYK 477 (954)
Q Consensus 467 g~~l~~~~~~~ 477 (954)
|..++|+...+
T Consensus 305 G~ifaYA~gYD 315 (347)
T KOG0647|consen 305 GSIFAYALGYD 315 (347)
T ss_pred CCEEEEEeecc
Confidence 99999987554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00043 Score=76.43 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=44.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
-+..++|-|||..|+....+ .++++|.+ || +....|.++. .
T Consensus 14 ci~d~afkPDGsqL~lAAg~----------------------------------rlliyD~n-dG--~llqtLKgHK--D 54 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS----------------------------------RLLVYDTS-DG--TLLQPLKGHK--D 54 (1081)
T ss_pred chheeEECCCCceEEEecCC----------------------------------EEEEEeCC-Cc--cccccccccc--c
Confidence 56689999999999998874 79999986 45 3444565543 3
Q ss_pred cccceeecCCCCeEEE
Q 002194 190 KLNFVTWSQDGKHLAF 205 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf 205 (954)
.+..++||-||++.|-
T Consensus 55 tVycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 55 TVYCVAYAKDGKRFAS 70 (1081)
T ss_pred eEEEEEEccCCceecc
Confidence 6889999999998765
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0064 Score=58.60 Aligned_cols=139 Identities=6% Similarity=-0.007 Sum_probs=77.5
Q ss_pred ccceEEEEEe-CCceeE-cCCC-ccc-cccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCC
Q 002194 312 ATTQLVLVSL-DGTVKE-IGPP-AVY-TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPL 386 (954)
Q Consensus 312 ~~~~l~~~~~-~G~~~~-l~~~-~~~-~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~ 386 (954)
+.-.||.-|. .|.... +... +.+ .-+.|+ |-.++..+ .+++|..||+.-. -++.+...-.
T Consensus 161 gdc~iy~tdc~~g~~~~a~sghtghilalyswn--~~m~~sgs-------------qdktirfwdlrv~~~v~~l~~~~~ 225 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQGFHALSGHTGHILALYSWN--GAMFASGS-------------QDKTIRFWDLRVNSCVNTLDNDFH 225 (350)
T ss_pred CcceEEEeecCCCCcceeecCCcccEEEEEEec--CcEEEccC-------------CCceEEEEeeeccceeeeccCccc
Confidence 4456888888 665333 3332 322 233454 44444333 2348999998733 3344332211
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEeecccccCceeecc
Q 002194 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCD 465 (954)
Q Consensus 387 ~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~sp 465 (954)
..... ...+.+++..|.|+.++-- .......++|+ .|+.. +....+..++..+.|||
T Consensus 226 ~~gle------ssavaav~vdpsgrll~sg-------------~~dssc~lydi---rg~r~iq~f~phsadir~vrfsp 283 (350)
T KOG0641|consen 226 DGGLE------SSAVAAVAVDPSGRLLASG-------------HADSSCMLYDI---RGGRMIQRFHPHSADIRCVRFSP 283 (350)
T ss_pred CCCcc------cceeEEEEECCCcceeeec-------------cCCCceEEEEe---eCCceeeeeCCCccceeEEEeCC
Confidence 11100 0123456777888754432 12334566775 45544 55567778889999999
Q ss_pred CCceEEEEEeccccceEEEEEcCCCC
Q 002194 466 DSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
.-.+++..+.+. .|.+.|+++.
T Consensus 284 ~a~yllt~syd~----~ikltdlqgd 305 (350)
T KOG0641|consen 284 GAHYLLTCSYDM----KIKLTDLQGD 305 (350)
T ss_pred CceEEEEecccc----eEEEeecccc
Confidence 998888775443 4666677664
|
|
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.2e-05 Score=75.79 Aligned_cols=108 Identities=21% Similarity=0.178 Sum_probs=62.5
Q ss_pred HHHHHHHHHHH----HcCCCCCCcEEEEeeChHHHHHHHHHHhC--------CCcccEEEEeccCCCCCCCCCCCccccc
Q 002194 741 ACAEAAVEEVV----RRGVAHPSKIAVGGHSYGAFMTANLLAHA--------PHLFCCGIARSGAYNRTLTPFGFQNEDR 808 (954)
Q Consensus 741 ~D~~~av~~l~----~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~~~~~~~~~~~~~~~~~~ 808 (954)
.++..++++|. +++-. .+|+|+|.||.+|+.+++.. ...|+.+|.++++.-....
T Consensus 84 ~~~~~sl~~l~~~i~~~GPf----dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~--------- 150 (212)
T PF03959_consen 84 EGLDESLDYLRDYIEENGPF----DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD--------- 150 (212)
T ss_dssp ---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE----------
T ss_pred cCHHHHHHHHHHHHHhcCCe----EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh---------
Confidence 44444444444 34433 59999999999999888642 2358999999885321000
Q ss_pred hhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 002194 809 TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 809 ~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
+.......++++|+|-++|.+|..++ .+.++++++.+... .+++.+++ ||.+-
T Consensus 151 -----------~~~~~~~~~i~iPtlHv~G~~D~~~~--~~~s~~L~~~~~~~---~~v~~h~g-GH~vP 203 (212)
T PF03959_consen 151 -----------YQELYDEPKISIPTLHVIGENDPVVP--PERSEALAEMFDPD---ARVIEHDG-GHHVP 203 (212)
T ss_dssp -----------GTTTT--TT---EEEEEEETT-SSS---HHHHHHHHHHHHHH---EEEEEESS-SSS--
T ss_pred -----------hhhhhccccCCCCeEEEEeCCCCCcc--hHHHHHHHHhccCC---cEEEEECC-CCcCc
Confidence 01111234578999999999999998 88999999998874 57777876 88873
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0008 Score=71.02 Aligned_cols=147 Identities=15% Similarity=0.142 Sum_probs=88.8
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..++.....|.|+|++..+++. ..-..|.. |.....+.... . . -.+.+.+|.|||
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~-------------~w~Fsd~~~g~~lt~vs~~~-s-~---------v~~ts~~fHpDg 359 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDG-------------TWAFSDISSGSQLTVVSDET-S-D---------VEYTSAAFHPDG 359 (506)
T ss_pred ccceeeeeccCCcEEEEecCCc-------------eEEEEEccCCcEEEEEeecc-c-c---------ceeEEeeEcCCc
Confidence 6778888999999999998664 22233444 33333333311 0 0 134578899999
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
- +|..- ...+.|-+||+ ...........+.+.+..++||.+|-+|+.++++.. ..||.+.-..
T Consensus 360 L--ifgtg-----------t~d~~vkiwdl--ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~--V~lwDLRKl~ 422 (506)
T KOG0289|consen 360 L--IFGTG-----------TPDGVVKIWDL--KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS--VKLWDLRKLK 422 (506)
T ss_pred e--EEecc-----------CCCceEEEEEc--CCccccccCCCCCCceeEEEeccCceEEEEEecCCe--EEEEEehhhc
Confidence 4 44421 23557888886 333344555667788899999999999999987653 5555544222
Q ss_pred CCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 491 ~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
..+.+.-.....+.+ +.|...|++|+...
T Consensus 423 ---n~kt~~l~~~~~v~s------~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 423 ---NFKTIQLDEKKEVNS------LSFDQSGTYLGIAG 451 (506)
T ss_pred ---ccceeecccccccee------EEEcCCCCeEEeec
Confidence 222222221112222 77888888887764
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0025 Score=71.27 Aligned_cols=79 Identities=9% Similarity=-0.015 Sum_probs=53.0
Q ss_pred ccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEe
Q 002194 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (954)
Q Consensus 396 ~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (954)
++...+..++-||+|+.|+-...... .....|++|+. ..=.+...|..+...+..++|||||++|+..+.
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~--------~ehAvI~lw~t--~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR 592 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSL--------KEHAVIRLWNT--ANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR 592 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCC--------ccceEEEEEec--cchhhhheecccceEEEEEEECCCCcEEEEeec
Confidence 33334567888999986665422211 22446888884 122344567788888999999999999998876
Q ss_pred ccccceEEEEE
Q 002194 476 YKTRRTRTWVI 486 (954)
Q Consensus 476 ~~~~~~~l~~~ 486 (954)
+.. ..||..
T Consensus 593 DRt--~sl~~~ 601 (764)
T KOG1063|consen 593 DRT--VSLYEV 601 (764)
T ss_pred Cce--EEeeee
Confidence 554 667766
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00095 Score=71.60 Aligned_cols=243 Identities=13% Similarity=0.093 Sum_probs=140.6
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcccc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (954)
.+.|++..+- +..+.+..+. ..+....|-.||+.+|- ++....+-++|..+...-+.......
T Consensus 49 rvqly~~~~~---~~~k~~srFk--~~v~s~~fR~DG~Llaa---------GD~sG~V~vfD~k~r~iLR~~~ah~a--- 111 (487)
T KOG0310|consen 49 RVQLYSSVTR---SVRKTFSRFK--DVVYSVDFRSDGRLLAA---------GDESGHVKVFDMKSRVILRQLYAHQA--- 111 (487)
T ss_pred EEEEEecchh---hhhhhHHhhc--cceeEEEeecCCeEEEc---------cCCcCcEEEeccccHHHHHHHhhccC---
Confidence 4556555321 2223344444 34778888899998876 44566677777544333222222222
Q ss_pred ccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C
Q 002194 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (954)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~ 322 (954)
.+....|+|++..++.+..+. . -+-.+|+ +
T Consensus 112 -pv~~~~f~~~d~t~l~s~sDd----------------------------------------------~--v~k~~d~s~ 142 (487)
T KOG0310|consen 112 -PVHVTKFSPQDNTMLVSGSDD----------------------------------------------K--VVKYWDLST 142 (487)
T ss_pred -ceeEEEecccCCeEEEecCCC----------------------------------------------c--eEEEEEcCC
Confidence 266788999887777651110 1 1222344 3
Q ss_pred Ccee-EcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc--eEEEeccCCCcccCCccccccc
Q 002194 323 GTVK-EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FVRELCDLPLAEDIPIAFNSVR 398 (954)
Q Consensus 323 G~~~-~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~--~~~~l~~~~~~~~~p~~~~~~~ 398 (954)
+... .+... ..+...+|+|-..+|+++.. |++.|.+||+... ....+...
T Consensus 143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGs------------YDg~vrl~DtR~~~~~v~elnhg-------------- 196 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVRCGDISPANDHIVVTGS------------YDGKVRLWDTRSLTSRVVELNHG-------------- 196 (487)
T ss_pred cEEEEEecCCcceeEeeccccCCCeEEEecC------------CCceEEEEEeccCCceeEEecCC--------------
Confidence 3321 23334 77889999999888888762 4669999999844 33333332
Q ss_pred cCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEeecccccCceeeccCCceEEEEEecc
Q 002194 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 399 ~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
..+.++-+-|.|..|+-. +.+.+-+||+ .+|++. .....+.-.+..+.+..|++.|+.++-+.
T Consensus 197 ~pVe~vl~lpsgs~iasA--------------gGn~vkVWDl--~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 197 CPVESVLALPSGSLIASA--------------GGNSVKVWDL--TTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred CceeeEEEcCCCCEEEEc--------------CCCeEEEEEe--cCCceehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 123567788888866654 3457889996 335433 22234566678888888998888775432
Q ss_pred ccceEEEEEcCCCCCCCcEEEecCCCC-CccCCCCCCCeeeccCCcEEEEEE
Q 002194 478 TRRTRTWVISPGSKDVAPRILFDRSSE-DVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 478 ~~~~~l~~~d~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+.++|. +.. -+.+..-... .+-+ +..|||+..++...
T Consensus 261 --~VKVfd--~t~----~Kvv~s~~~~~pvLs------iavs~dd~t~viGm 298 (487)
T KOG0310|consen 261 --HVKVFD--TTN----YKVVHSWKYPGPVLS------IAVSPDDQTVVIGM 298 (487)
T ss_pred --ceEEEE--ccc----eEEEEeeecccceee------EEecCCCceEEEec
Confidence 244444 332 2333221111 1112 67899999988876
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00042 Score=70.40 Aligned_cols=104 Identities=11% Similarity=0.207 Sum_probs=65.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCc-eeeeecCC-C
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ-EIEIQGFP-D 187 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~-~~~lt~~~-~ 187 (954)
+...-+|++|++.+|...+. .++-|+.... .. ......+. +
T Consensus 12 pitchAwn~drt~iAv~~~~---------------------------------~evhiy~~~~----~~~w~~~htls~H 54 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNN---------------------------------HEVHIYSMLG----ADLWEPAHTLSEH 54 (361)
T ss_pred ceeeeeecCCCceEEeccCC---------------------------------ceEEEEEecC----CCCceeceehhhh
Confidence 45567899999999998764 3666776633 22 22222222 3
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEEC-CCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV-DTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~-~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
...++.+-|+|.+.+|+.+.. ..+-|++.. ++++-.+..-. -.+|+....+.|+|.+..+++.
T Consensus 55 d~~vtgvdWap~snrIvtcs~---------drnayVw~~~~~~~WkptlvL--lRiNrAAt~V~WsP~enkFAVg 118 (361)
T KOG1523|consen 55 DKIVTGVDWAPKSNRIVTCSH---------DRNAYVWTQPSGGTWKPTLVL--LRINRAATCVKWSPKENKFAVG 118 (361)
T ss_pred CcceeEEeecCCCCceeEccC---------CCCccccccCCCCeeccceeE--EEeccceeeEeecCcCceEEec
Confidence 346788999999999998763 223344444 55544332111 1234446689999999988865
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0012 Score=69.79 Aligned_cols=236 Identities=11% Similarity=0.086 Sum_probs=136.6
Q ss_pred ccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeecccc
Q 002194 134 LEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAED 213 (954)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~ 213 (954)
+..+.+...+...+.+.+........+.+..|+||.+... ....+. .++...+....-.|.|++++.+++
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~----s~~~~~-~~h~~~V~~ls~h~tgeYllsAs~----- 323 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS----SEPTSS-RPHEEPVTGLSLHPTGEYLLSASN----- 323 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc----cCcccc-ccccccceeeeeccCCcEEEEecC-----
Confidence 3345556666667777777665555555678999988542 222221 234456788888899998888653
Q ss_pred CCCCceEEEEEECCCCce-eecccC-CCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceee
Q 002194 214 SSSSKLRVWVADVDTGKA-RPLFQS-PDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQ 291 (954)
Q Consensus 214 ~~~~~~~l~~~d~~~g~~-~~lt~~-~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (954)
....-..|..+|.. .++... .+.. +...+|.|||-++...+
T Consensus 324 ----d~~w~Fsd~~~g~~lt~vs~~~s~v~----~ts~~fHpDgLifgtgt----------------------------- 366 (506)
T KOG0289|consen 324 ----DGTWAFSDISSGSQLTVVSDETSDVE----YTSAAFHPDGLIFGTGT----------------------------- 366 (506)
T ss_pred ----CceEEEEEccCCcEEEEEeeccccce----eEEeeEcCCceEEeccC-----------------------------
Confidence 12222223334332 333221 1111 45888999996555320
Q ss_pred echhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcce
Q 002194 292 VRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQV 368 (954)
Q Consensus 292 ~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l 368 (954)
..+.|-++|+ ++ ....+... +.+..++||-+|-||+...++. .+
T Consensus 367 --------------------~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~-------------~V 413 (506)
T KOG0289|consen 367 --------------------PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG-------------SV 413 (506)
T ss_pred --------------------CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC-------------eE
Confidence 2244666777 44 34444444 7888999999999999998553 59
Q ss_pred EEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCC
Q 002194 369 GVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG 447 (954)
Q Consensus 369 ~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 447 (954)
.+||+..- ..+.+.. .+. .++.++.|-+.|+.++.. +..-.||.+.- ...+
T Consensus 414 ~lwDLRKl~n~kt~~l---~~~---------~~v~s~~fD~SGt~L~~~-------------g~~l~Vy~~~k---~~k~ 465 (506)
T KOG0289|consen 414 KLWDLRKLKNFKTIQL---DEK---------KEVNSLSFDQSGTYLGIA-------------GSDLQVYICKK---KTKS 465 (506)
T ss_pred EEEEehhhcccceeec---ccc---------ccceeEEEcCCCCeEEee-------------cceeEEEEEec---cccc
Confidence 99999742 2222222 111 245678888888876655 22335565552 2223
Q ss_pred ceEE---eecccccCceeeccCCceEEEEEecc
Q 002194 448 PEIL---HKLDLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 448 ~~~l---~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
-+.+ ....+....+.|...-++++..+.+.
T Consensus 466 W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~ 498 (506)
T KOG0289|consen 466 WTEIKELADHSGLSTGVRFGEHAQYLASTSMDA 498 (506)
T ss_pred ceeeehhhhcccccceeeecccceEEeeccchh
Confidence 2222 33334455677777777777665543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00033 Score=68.49 Aligned_cols=177 Identities=14% Similarity=0.135 Sum_probs=109.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
-+.+.+||-|.++|+.-... .-|+|++++.. ..+++.+.+.+ .
T Consensus 102 ivk~~af~~ds~~lltgg~e---------------------------------kllrvfdln~p--~App~E~~ght--g 144 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQE---------------------------------KLLRVFDLNRP--KAPPKEISGHT--G 144 (334)
T ss_pred eeeeEEecccchhhhccchH---------------------------------HHhhhhhccCC--CCCchhhcCCC--C
Confidence 36678888888888766553 24566666431 13455665554 3
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..+.|--..+.|+-.. . ...|.++|..+|...+-...+.. +.++..++||++|..+
T Consensus 145 ~Ir~v~wc~eD~~iLSSa-------d--d~tVRLWD~rTgt~v~sL~~~s~-----VtSlEvs~dG~ilTia-------- 202 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSA-------D--DKTVRLWDHRTGTEVQSLEFNSP-----VTSLEVSQDGRILTIA-------- 202 (334)
T ss_pred cceeEEEeccCceEEeec-------c--CCceEEEEeccCcEEEEEecCCC-----CcceeeccCCCEEEEe--------
Confidence 588888987777887753 2 34555567777777665444433 6789999999988866
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--CCceeEcCCCccccccccCCCCcEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPPAVYTSLDPSPDEKYIL 347 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~--~G~~~~l~~~~~~~~~~~SpDGk~l~ 347 (954)
..+.|-.+|. =|.++....+..+.+.+++|+-..++
T Consensus 203 ------------------------------------------~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 203 ------------------------------------------YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV 240 (334)
T ss_pred ------------------------------------------cCceeEEeccccccceeeccCccccccccccCCCceEE
Confidence 1122334444 24455555557788999999874443
Q ss_pred EEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
... . ...++.+|-++++...... .+..+.+-.+.|||||.
T Consensus 241 aGg-e------------d~~~~kfDy~TgeEi~~~n-----------kgh~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 241 AGG-E------------DFKVYKFDYNTGEEIGSYN-----------KGHFGPVHCVRFSPDGE 280 (334)
T ss_pred ecC-c------------ceEEEEEeccCCceeeecc-----------cCCCCceEEEEECCCCc
Confidence 332 1 1267777777665443310 12223456689999997
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00079 Score=67.35 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=73.6
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCcee--ecccCCCccccccccceeEec--CCeEEEEEecCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR--PLFQSPDIYLNAIFDNFVWVN--NSTLLVCTIPLL 265 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~--~lt~~~~~~~~~~~~~~~wsp--DG~~l~~~~~~~ 265 (954)
.+..+.|-||++.|+-.. ..+|-+++++.+..+ .+...........+.+-+||| ||..++.+
T Consensus 125 ~i~cvew~Pns~klasm~----------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt---- 190 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD----------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT---- 190 (370)
T ss_pred ceeeEEEcCCCCeeEEec----------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe----
Confidence 678899999999999875 345666666654432 121111111112255788997 88888876
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCC--ccccccccCC
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP--AVYTSLDPSP 341 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~--~~~~~~~~Sp 341 (954)
+.+.|+-+|+ +- +...|... ..+.++.|.|
T Consensus 191 ----------------------------------------------~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp 224 (370)
T KOG1007|consen 191 ----------------------------------------------SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP 224 (370)
T ss_pred ----------------------------------------------CCCcEEEEEccchhhhcchhhhhcceeeeccCCC
Confidence 3345777777 32 33333332 5678899999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEecc
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~ 374 (954)
+-++++.+..+. +.+.+||..
T Consensus 225 nkq~~lvt~gDd------------gyvriWD~R 245 (370)
T KOG1007|consen 225 NKQHILVTCGDD------------GYVRIWDTR 245 (370)
T ss_pred CceEEEEEcCCC------------ccEEEEecc
Confidence 999998887553 378899987
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0044 Score=70.68 Aligned_cols=212 Identities=12% Similarity=0.056 Sum_probs=112.0
Q ss_pred cccceeec-----CCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeE--ecCCeEEEEEe
Q 002194 190 KLNFVTWS-----QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW--VNNSTLLVCTI 262 (954)
Q Consensus 190 ~~~~~~wS-----PDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w--spDG~~l~~~~ 262 (954)
...+|..| -||++| |+.+ ..+.+|-+++++.-+..+++..+...- +....+ .|+-.++++..
T Consensus 126 D~HHp~~s~t~g~ydGr~~-find-------k~n~Rvari~l~~~~~~~i~~iPn~~~---~Hg~~~~~~p~t~yv~~~~ 194 (635)
T PRK02888 126 DTHHPHMSFTDGTYDGRYL-FIND-------KANTRVARIRLDVMKCDKITELPNVQG---IHGLRPQKIPRTGYVFCNG 194 (635)
T ss_pred CcCCCcccccCCccceeEE-EEec-------CCCcceEEEECccEeeceeEeCCCccC---ccccCccccCCccEEEeCc
Confidence 45666666 477765 5553 347899999999888888877665321 223333 37777776541
Q ss_pred cCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCcccccccccc--ccceEEEEEe-CCc-eeEcCCCccccccc
Q 002194 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYY--ATTQLVLVSL-DGT-VKEIGPPAVYTSLD 338 (954)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~--~~~~l~~~~~-~G~-~~~l~~~~~~~~~~ 338 (954)
...- |. +++ +..+..+ ....+-.+|. +-+ ..++.-++.....+
T Consensus 195 e~~~---------Pl-----pnD-------------------Gk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~ 241 (635)
T PRK02888 195 EFRI---------PL-----PND-------------------GKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVD 241 (635)
T ss_pred cccc---------cc-----CCC-------------------CCEeecccceeEEEEEEECccceEEEEEEeCCCcccce
Confidence 1100 00 011 1000000 1233455666 332 33443345567789
Q ss_pred cCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002194 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (954)
Q Consensus 339 ~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~ 418 (954)
++|||+++++++...+. ...+...+............. +.-.+.+||+...+.
T Consensus 242 ~spdGk~afvTsyNsE~---------G~tl~em~a~e~d~~vvfni~----------------~iea~vkdGK~~~V~-- 294 (635)
T PRK02888 242 TDYDGKYAFSTCYNSEE---------GVTLAEMMAAERDWVVVFNIA----------------RIEEAVKAGKFKTIG-- 294 (635)
T ss_pred ECCCCCEEEEeccCccc---------CcceeeeccccCceEEEEchH----------------HHHHhhhCCCEEEEC--
Confidence 99999999998743221 113333333221111111100 112466788743321
Q ss_pred eccCCCccccccCCCeEEEEecCCCC----CCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 419 TQDGGDAKVEVTPRDIIYTQQAEPVQ----GEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~----g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
.+.|-++|. .. +.+............++.+||||++++.+.... ..+-++|+..
T Consensus 295 -------------gn~V~VID~--~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS---~tVSVIDv~k 352 (635)
T PRK02888 295 -------------GSKVPVVDG--RKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLS---PTVTVIDVRK 352 (635)
T ss_pred -------------CCEEEEEEC--CccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCC---CcEEEEEChh
Confidence 346778884 22 123333334455677899999999998875443 3466777765
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0027 Score=67.71 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=40.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
.+...+.||||++||+ +.....|.+++.++.+.++.+...... +.+++|-..-..+|.+
T Consensus 204 eil~~avS~Dgkylat---------gg~d~~v~Iw~~~t~ehv~~~~ghr~~----V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLAT---------GGRDRHVQIWDCDTLEHVKVFKGHRGA----VSSLAFRKGTSELYSA 262 (479)
T ss_pred eeEEEEEcCCCcEEEe---------cCCCceEEEecCcccchhhcccccccc----eeeeeeecCccceeee
Confidence 5667789999999999 334667778899999988875544332 5566665444444443
|
|
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00043 Score=76.16 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=54.5
Q ss_pred cCCCC-CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC-CcEEEEEeCCCCCc--CCCcccHHHHHHHHHHHHHHh
Q 002194 826 ANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHG--YAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 826 ~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~fl~~~ 897 (954)
+++|+ +|+|.+-|+.|.+|| +.++..+.+.+...+ .+++.+..+++||. +.......+++..|.+||.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p--~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISG--LGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCC--HHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 35678 999999999999999 999988888764443 34567778788996 345555678888999999763
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00074 Score=70.66 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=60.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
...++++||||+.+||+... +. . ..|++... ++ ....+. .+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~----------------------~~--~------~~L~~~~~--~~---~~~~~~---~g~ 66 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEG----------------------DG--G------RSLYVGPA--GG---PVRPVL---TGG 66 (253)
T ss_pred cccceEECCCCCeEEEEEEc----------------------CC--C------CEEEEEcC--CC---cceeec---cCC
Confidence 56789999999999999821 00 0 26777654 22 233331 234
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC-CceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
....|+|++||...++.. ++....++....++ +....+-..... +.+..+.+||||.++++.
T Consensus 67 ~l~~PS~d~~g~~W~v~~-------~~~~~~~~~~~~~g~~~~~~v~~~~~~---~~I~~l~vSpDG~RvA~v 129 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDD-------GSGGVRVVRDSASGTGEPVEVDWPGLR---GRITALRVSPDGTRVAVV 129 (253)
T ss_pred ccccccccCCCCEEEEEc-------CCCceEEEEecCCCcceeEEecccccC---CceEEEEECCCCcEEEEE
Confidence 688999999975444422 22233333322222 222333222111 127799999999999988
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0011 Score=68.86 Aligned_cols=280 Identities=11% Similarity=0.133 Sum_probs=157.1
Q ss_pred CCCChhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCcccccccccee-----------eeeeecCCCCCCcceeeEec
Q 002194 96 RLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKL-----------AGLRIDGKCNTRSRMSFYTG 164 (954)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 164 (954)
-.+|+++..++...+++++..+ +++|+..+.++...++++.+-..++ .-+..+........++.+..
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqt 170 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQT 170 (423)
T ss_pred cCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCce
Confidence 4577778888888899999998 8899999888887888777655554 11222222222223333355
Q ss_pred eEEEEccCCCCCCceeee-ecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEE--EECCC-------------
Q 002194 165 IGIHQLFPDGKLGQEIEI-QGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV--ADVDT------------- 228 (954)
Q Consensus 165 l~l~~~~~~g~~~~~~~l-t~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~--~d~~~------------- 228 (954)
|.+|..+.+......... .+ +...+..++-.+||.+++-.+ -+....||- .+.++
T Consensus 171 l~Lw~~~~~~~~~~~~~~~~G--Hk~~V~sVsv~~sgtr~~SgS-------~D~~lkiWs~~~~~~~~~E~~s~~rrk~~ 241 (423)
T KOG0313|consen 171 LRLWKWNVGENKVKALKVCRG--HKRSVDSVSVDSSGTRFCSGS-------WDTMLKIWSVETDEEDELESSSNRRRKKQ 241 (423)
T ss_pred EEEEEecCchhhhhHHhHhcc--cccceeEEEecCCCCeEEeec-------ccceeeecccCCCccccccccchhhhhhh
Confidence 666666432100011111 12 223677778889998877644 222444444 11110
Q ss_pred ------CceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCc
Q 002194 229 ------GKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDE 302 (954)
Q Consensus 229 ------g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~ 302 (954)
+...+++... +....+..+.|++ ...++..+
T Consensus 242 ~~~~~~~~r~P~vtl~--GHt~~Vs~V~w~d-~~v~yS~S---------------------------------------- 278 (423)
T KOG0313|consen 242 KREKEGGTRTPLVTLE--GHTEPVSSVVWSD-ATVIYSVS---------------------------------------- 278 (423)
T ss_pred hhhhcccccCceEEec--ccccceeeEEEcC-CCceEeec----------------------------------------
Confidence 1111111111 1122356778876 33444330
Q ss_pred cccccccccccceEEEEEe-C-CceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEE
Q 002194 303 YDEDLFDYYATTQLVLVSL-D-GTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE 380 (954)
Q Consensus 303 ~d~~~~~~~~~~~l~~~~~-~-G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~ 380 (954)
..-.|..+|+ + |....++.+.....++.+|+-+.|+..+.++ .+.+||...+.-..
T Consensus 279 ---------wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr-------------~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 279 ---------WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDR-------------HIRLWDPRTGDGSV 336 (423)
T ss_pred ---------ccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCC-------------ceeecCCCCCCCce
Confidence 1123667787 4 5666777777788899999999888877443 78899987432111
Q ss_pred eccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCc
Q 002194 381 LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG 460 (954)
Q Consensus 381 l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~ 460 (954)
+.. .+.++...+.++.|+|-...++... +..+.+.+||+ -...+....|..+...+-.
T Consensus 337 v~~---------s~~gH~nwVssvkwsp~~~~~~~S~------------S~D~t~klWDv-RS~k~plydI~~h~DKvl~ 394 (423)
T KOG0313|consen 337 VSQ---------SLIGHKNWVSSVKWSPTNEFQLVSG------------SYDNTVKLWDV-RSTKAPLYDIAGHNDKVLS 394 (423)
T ss_pred eEE---------eeecchhhhhheecCCCCceEEEEE------------ecCCeEEEEEe-ccCCCcceeeccCCceEEE
Confidence 110 1123335667899999888665541 33456777775 1122344566666666666
Q ss_pred eeeccCCceEEEEE
Q 002194 461 ISWCDDSLALVYES 474 (954)
Q Consensus 461 ~~~spDg~~l~~~~ 474 (954)
+.|. +|..|+...
T Consensus 395 vdW~-~~~~IvSGG 407 (423)
T KOG0313|consen 395 VDWN-EGGLIVSGG 407 (423)
T ss_pred Eecc-CCceEEecc
Confidence 7775 344455543
|
|
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.77 E-value=7e-05 Score=62.15 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=55.1
Q ss_pred CeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCC
Q 002194 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGD 728 (954)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~ 728 (954)
|.+|....|.|+. . +..+|+++||.. .........+..|+++||.|+. .|.+|+|.
T Consensus 1 G~~L~~~~w~p~~-----~-~k~~v~i~HG~~---------------eh~~ry~~~a~~L~~~G~~V~~---~D~rGhG~ 56 (79)
T PF12146_consen 1 GTKLFYRRWKPEN-----P-PKAVVVIVHGFG---------------EHSGRYAHLAEFLAEQGYAVFA---YDHRGHGR 56 (79)
T ss_pred CcEEEEEEecCCC-----C-CCEEEEEeCCcH---------------HHHHHHHHHHHHHHhCCCEEEE---ECCCcCCC
Confidence 6789999999875 1 468999999942 2223345678889999999999 78889999
Q ss_pred cccch---hhHHHHHHHHHHHH
Q 002194 729 EEAND---RFVEQLVACAEAAV 747 (954)
Q Consensus 729 ~~~~~---~~~~~~~~D~~~av 747 (954)
|.... ..+...++|+...+
T Consensus 57 S~g~rg~~~~~~~~v~D~~~~~ 78 (79)
T PF12146_consen 57 SEGKRGHIDSFDDYVDDLHQFI 78 (79)
T ss_pred CCCcccccCCHHHHHHHHHHHh
Confidence 87532 33566777777654
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0026 Score=66.54 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=42.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
....+++||||+.+||+.. .++...||+...++. .+.+..... +..+.|+++|...++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~------~~~~~~L~~~~~~~~-~~~~~~g~~------l~~PS~d~~g~~W~v~ 83 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSE------GDGGRSLYVGPAGGP-VRPVLTGGS------LTRPSWDPDGWVWTVD 83 (253)
T ss_pred cccceEECCCCCeEEEEEE------cCCCCEEEEEcCCCc-ceeeccCCc------cccccccCCCCEEEEE
Confidence 6889999999999999872 456889999986554 344332222 6789999997655543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.036 Score=68.59 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=52.6
Q ss_pred EEEEEeCCceeEcCCC--ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCcc
Q 002194 316 LVLVSLDGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIA 393 (954)
Q Consensus 316 l~~~~~~G~~~~l~~~--~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~ 393 (954)
|-+++-+|+..-..++ +--..++|-|.|.+||.+... +. ..+|..+.-+|-......-...
T Consensus 239 iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~-~~---------~~~VvFfErNGLrhgeF~l~~~------- 301 (928)
T PF04762_consen 239 IRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRL-PD---------RHDVVFFERNGLRHGEFTLRFD------- 301 (928)
T ss_pred EEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEc-CC---------CcEEEEEecCCcEeeeEecCCC-------
Confidence 4444446776666665 445678999999999998842 21 1267777777644333222110
Q ss_pred ccccccCccceeeccCCCCceEEE
Q 002194 394 FNSVRKGMRSINWRSDKPSTLYWA 417 (954)
Q Consensus 394 ~~~~~~g~~~~~wspDg~~i~~~~ 417 (954)
.....+..+.|++|+..++.+.
T Consensus 302 --~~~~~v~~l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 302 --PEEEKVIELAWNSDSEILAVWL 323 (928)
T ss_pred --CCCceeeEEEECCCCCEEEEEe
Confidence 0112346799999999998883
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0012 Score=72.98 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=43.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
-+...+|-|||..|+... +..|+++|+..|..-+-....... +.-++||.||++++..
T Consensus 14 ci~d~afkPDGsqL~lAA----------g~rlliyD~ndG~llqtLKgHKDt----VycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA----------GSRLLVYDTSDGTLLQPLKGHKDT----VYCVAYAKDGKRFASG 71 (1081)
T ss_pred chheeEECCCCceEEEec----------CCEEEEEeCCCcccccccccccce----EEEEEEccCCceeccC
Confidence 578899999999999876 578999999766544333333322 6789999999998854
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0013 Score=72.43 Aligned_cols=139 Identities=15% Similarity=0.193 Sum_probs=80.9
Q ss_pred ccceEEEEEeCCceeE-------cCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEec
Q 002194 312 ATTQLVLVSLDGTVKE-------IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELC 382 (954)
Q Consensus 312 ~~~~l~~~~~~G~~~~-------l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~ 382 (954)
+.-.||++..+|-.+. |+.+ ..+.++.|.|=-.-++.+ ..++.+|.+||+..... -.+.
T Consensus 650 g~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~------------asyd~Ti~lWDl~~~~~~~~l~ 717 (1012)
T KOG1445|consen 650 GQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAV------------ASYDSTIELWDLANAKLYSRLV 717 (1012)
T ss_pred ceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhh------------hhccceeeeeehhhhhhhheec
Confidence 4456888877442222 2222 445566666632222221 12345899999985432 2333
Q ss_pred cCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec--ccccCc
Q 002194 383 DLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRYGG 460 (954)
Q Consensus 383 ~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--~~~~~~ 460 (954)
.+ ..++.+++|||||++++-. ...+.|++++ |..+.++..-..+ ..+-..
T Consensus 718 gH-------------tdqIf~~AWSpdGr~~AtV-------------cKDg~~rVy~--Prs~e~pv~Eg~gpvgtRgAR 769 (1012)
T KOG1445|consen 718 GH-------------TDQIFGIAWSPDGRRIATV-------------CKDGTLRVYE--PRSREQPVYEGKGPVGTRGAR 769 (1012)
T ss_pred cC-------------cCceeEEEECCCCcceeee-------------ecCceEEEeC--CCCCCCccccCCCCccCccee
Confidence 32 2456789999999998876 3356788887 3444433222111 223345
Q ss_pred eeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 461 ISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 461 ~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+.|.=||+.|+....++..+.+|-.++.++
T Consensus 770 i~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 770 ILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred EEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 899999999998876665444455555544
|
|
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00049 Score=75.90 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=74.7
Q ss_pred CCCCCCcEEEEeeChHHHHHHHHHHhCCC-cccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCC
Q 002194 754 GVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKP 832 (954)
Q Consensus 754 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P 832 (954)
+.....+|.|+|+|||+.+++++...+.+ .+.|+||+.-.++...-+.+. +-+.+..++.|
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdgprgi------------------rDE~Lldmk~P 306 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDGPRGI------------------RDEALLDMKQP 306 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCcccCC------------------cchhhHhcCCc
Confidence 44455689999999999888888776543 477888876444322111111 11223346899
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 002194 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 833 ~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
+||+.|.+|..|+ ++..+++.++++.. ++++++.+++|.+.
T Consensus 307 VLFV~Gsnd~mcs--pn~ME~vreKMqA~---~elhVI~~adhsma 347 (784)
T KOG3253|consen 307 VLFVIGSNDHMCS--PNSMEEVREKMQAE---VELHVIGGADHSMA 347 (784)
T ss_pred eEEEecCCcccCC--HHHHHHHHHHhhcc---ceEEEecCCCcccc
Confidence 9999999999998 88888888888765 79999999999874
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00063 Score=71.76 Aligned_cols=73 Identities=12% Similarity=-0.060 Sum_probs=47.4
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE--eecccccCceeeccCCceEEEEEecc
Q 002194 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 400 g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
++.+++.|+||+.++.- ...+.|-++++ ..=+..++ ..+..-+..+.|+||.++++-.+.+.
T Consensus 283 siSsl~VS~dGkf~AlG-------------T~dGsVai~~~---~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALG-------------TMDGSVAIYDA---KSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred cceeEEEcCCCcEEEEe-------------ccCCcEEEEEe---ceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 55789999999988776 22345666664 22122222 23455678899999999998865544
Q ss_pred ccceEEEEEcCCC
Q 002194 478 TRRTRTWVISPGS 490 (954)
Q Consensus 478 ~~~~~l~~~d~~~ 490 (954)
+ .+|..+..+.
T Consensus 347 ~--~~v~~l~vd~ 357 (398)
T KOG0771|consen 347 E--AAVTKLAVDK 357 (398)
T ss_pred c--eeEEEEeecc
Confidence 3 6677766654
|
|
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00053 Score=71.47 Aligned_cols=123 Identities=18% Similarity=0.144 Sum_probs=80.5
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCC-CcccHHHHHHH-HCCcEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFP-RIGSTSVLLWL-ARGFAI 715 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la-~~G~~V 715 (954)
..+++.+.. |+..|.+....-+...+ ---|+++-|... .... ... .+.......++ ..|..|
T Consensus 111 ~~kRv~Iq~-D~~~IDt~~I~~~~a~~-----~RWiL~s~GNg~-------~~E~---~~~~~~~~~~~~~~ak~~~aNv 174 (365)
T PF05677_consen 111 SVKRVPIQY-DGVKIDTMAIHQPEAKP-----QRWILVSNGNGE-------CYEN---RAMLDYKDDWIQRFAKELGANV 174 (365)
T ss_pred ceeeEEEee-CCEEEEEEEeeCCCCCC-----CcEEEEEcCChH-------Hhhh---hhhhccccHHHHHHHHHcCCcE
Confidence 457777775 88999887765222222 345777766321 1110 000 00111233333 478999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEeeChHHHHHHHHHHhC
Q 002194 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAFMTANLLAHA 780 (954)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~-~~d~~ri~l~G~S~GG~~a~~~a~~~ 780 (954)
+. +.++|.|.|.+... ...++.|..++++||+++. .+.+++|.+.|||.||.+++.++...
T Consensus 175 l~---fNYpGVg~S~G~~s-~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 175 LV---FNYPGVGSSTGPPS-RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred EE---ECCCccccCCCCCC-HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 99 55567777766655 4889999999999999854 47889999999999999988866554
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0058 Score=58.88 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=64.8
Q ss_pred cccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002194 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (954)
Q Consensus 333 ~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~ 412 (954)
.+..++..|.|+.|+....+ ....+||+.|+...+-.. | ....++.+.|||..-+
T Consensus 233 avaav~vdpsgrll~sg~~d-------------ssc~lydirg~r~iq~f~-p-----------hsadir~vrfsp~a~y 287 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHAD-------------SSCMLYDIRGGRMIQRFH-P-----------HSADIRCVRFSPGAHY 287 (350)
T ss_pred eeEEEEECCCcceeeeccCC-------------CceEEEEeeCCceeeeeC-C-----------CccceeEEEeCCCceE
Confidence 34567889999988765532 256789999876543222 1 1134578899995532
Q ss_pred ceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE-----eecccccCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-----HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-----~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
++-- +....|.+-|+ .|.-..+| ..+....-...|.|..-.++.++.+++ ..||.++
T Consensus 288 llt~-------------syd~~ikltdl---qgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt--~tlwa~~ 349 (350)
T KOG0641|consen 288 LLTC-------------SYDMKIKLTDL---QGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT--ATLWALN 349 (350)
T ss_pred EEEe-------------cccceEEEeec---ccchhhcCceEEEEeccCceEEEEecCccceeeeccCcce--EEEeccC
Confidence 2211 33446666664 44333222 333444456788887766555544443 5677654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0026 Score=61.92 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=68.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCC-CC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DG 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~-~~ 188 (954)
.+.++.|.-||++.+....+ ..+.+|+... | . .|.... +|
T Consensus 19 aV~avryN~dGnY~ltcGsd---------------------------------rtvrLWNp~r-g---~--liktYsghG 59 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSD---------------------------------RTVRLWNPLR-G---A--LIKTYSGHG 59 (307)
T ss_pred ceEEEEEccCCCEEEEcCCC---------------------------------ceEEeecccc-c---c--eeeeecCCC
Confidence 45677888899988887765 4788998632 2 2 222221 34
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
..+....-|.|...++- ..+...++++|+++|+..+-....... ++.++|..+...++..
T Consensus 60 ~EVlD~~~s~Dnskf~s---------~GgDk~v~vwDV~TGkv~Rr~rgH~aq----VNtV~fNeesSVv~Sg 119 (307)
T KOG0316|consen 60 HEVLDAALSSDNSKFAS---------CGGDKAVQVWDVNTGKVDRRFRGHLAQ----VNTVRFNEESSVVASG 119 (307)
T ss_pred ceeeecccccccccccc---------CCCCceEEEEEcccCeeeeecccccce----eeEEEecCcceEEEec
Confidence 47888888889988776 446788999999998875544444333 6778888777766654
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0013 Score=70.51 Aligned_cols=196 Identities=17% Similarity=0.207 Sum_probs=120.2
Q ss_pred cCCCChhHHHhhcCC--CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccC
Q 002194 95 YRLPPPEIREIVDAP--PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP 172 (954)
Q Consensus 95 ~~~~~~~~~~~~~~~--~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 172 (954)
+...+..|...+.+. ++....|+|++.+++....+ + .-+.+|++++
T Consensus 95 fD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD----------------------d----------~v~k~~d~s~ 142 (487)
T KOG0310|consen 95 FDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD----------------------D----------KVVKYWDLST 142 (487)
T ss_pred eccccHHHHHHHhhccCceeEEEecccCCeEEEecCC----------------------C----------ceEEEEEcCC
Confidence 334444455555442 35567899999888776654 1 2456777743
Q ss_pred CCCCCce-eeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeE
Q 002194 173 DGKLGQE-IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW 251 (954)
Q Consensus 173 ~g~~~~~-~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w 251 (954)
... ..|.++ ..++....|+|-..+|+++.. -++...||-....+ .+.+.-..+.. ++.+.+
T Consensus 143 ----a~v~~~l~~h--tDYVR~g~~~~~~~hivvtGs------YDg~vrl~DtR~~~--~~v~elnhg~p----Ve~vl~ 204 (487)
T KOG0310|consen 143 ----AYVQAELSGH--TDYVRCGDISPANDHIVVTGS------YDGKVRLWDTRSLT--SRVVELNHGCP----VESVLA 204 (487)
T ss_pred ----cEEEEEecCC--cceeEeeccccCCCeEEEecC------CCceEEEEEeccCC--ceeEEecCCCc----eeeEEE
Confidence 222 123332 248999999999999999632 34455555444333 33333222222 778889
Q ss_pred ecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc--eeEc
Q 002194 252 VNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEI 328 (954)
Q Consensus 252 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~--~~~l 328 (954)
-|.|..|+.+ +..++-++|+ +|. +...
T Consensus 205 lpsgs~iasA--------------------------------------------------gGn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 205 LPSGSLIASA--------------------------------------------------GGNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cCCCCEEEEc--------------------------------------------------CCCeEEEEEecCCceehhhh
Confidence 9999999866 4455778888 452 2333
Q ss_pred CCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeec
Q 002194 329 GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (954)
Q Consensus 329 ~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~ws 407 (954)
.+. ..++...+..|+.+|+..+.++ .+.++|+..- +.+.... .++.+-+++.|
T Consensus 235 ~~H~KtVTcL~l~s~~~rLlS~sLD~-------------~VKVfd~t~~--Kvv~s~~-----------~~~pvLsiavs 288 (487)
T KOG0310|consen 235 FNHNKTVTCLRLASDSTRLLSGSLDR-------------HVKVFDTTNY--KVVHSWK-----------YPGPVLSIAVS 288 (487)
T ss_pred hcccceEEEEEeecCCceEeeccccc-------------ceEEEEccce--EEEEeee-----------cccceeeEEec
Confidence 333 7788999999999998887543 7888885432 2222211 12345678888
Q ss_pred cCCCCceEE
Q 002194 408 SDKPSTLYW 416 (954)
Q Consensus 408 pDg~~i~~~ 416 (954)
||++.++.-
T Consensus 289 ~dd~t~viG 297 (487)
T KOG0310|consen 289 PDDQTVVIG 297 (487)
T ss_pred CCCceEEEe
Confidence 888765543
|
|
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00026 Score=83.83 Aligned_cols=93 Identities=16% Similarity=0.081 Sum_probs=64.5
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc-----------------
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN----------------- 732 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~----------------- 732 (954)
.|+||++||.... ......++..|+++||.|++ .+.+|||.+...
T Consensus 449 ~P~VVllHG~~g~---------------~~~~~~lA~~La~~Gy~VIa---iDlpGHG~S~~~~~~~~~~a~~~~~~~y~ 510 (792)
T TIGR03502 449 WPVVIYQHGITGA---------------KENALAFAGTLAAAGVATIA---IDHPLHGARSFDANASGVNATNANVLAYM 510 (792)
T ss_pred CcEEEEeCCCCCC---------------HHHHHHHHHHHHhCCcEEEE---eCCCCCCccccccccccccccccCcccee
Confidence 6899999994211 00112456677889999999 566666666211
Q ss_pred --------hhhHHHHHHHHHHHHHHHH------Hc----CCCCCCcEEEEeeChHHHHHHHHHHhC
Q 002194 733 --------DRFVEQLVACAEAAVEEVV------RR----GVAHPSKIAVGGHSYGAFMTANLLAHA 780 (954)
Q Consensus 733 --------~~~~~~~~~D~~~av~~l~------~~----~~~d~~ri~l~G~S~GG~~a~~~a~~~ 780 (954)
++.+.+.+.|+......|. +. ...+..++.++||||||.++..++...
T Consensus 511 Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 511 NLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 1234677889888888776 21 125567999999999999999998764
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.02 Score=66.09 Aligned_cols=248 Identities=15% Similarity=0.214 Sum_probs=140.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCC-CC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DG 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~-~~ 188 (954)
++-+++|.|-.-+|+.+-.. +.|.+||..= | +.|..+. +.
T Consensus 11 RvKglsFHP~rPwILtslHs---------------------------------G~IQlWDYRM-~-----tli~rFdeHd 51 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHS---------------------------------GVIQLWDYRM-G-----TLIDRFDEHD 51 (1202)
T ss_pred cccceecCCCCCEEEEeecC---------------------------------ceeeeehhhh-h-----hHHhhhhccC
Confidence 57789999999999887653 4677777632 1 1122222 33
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCC-ccccccccceeEecCCeEEEEEecCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD-IYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~-~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
+.+..+.|.|++- +|++. +++....+|-+. .. |-+...-+ ..+ +..+.|.+.=-+|..+
T Consensus 52 GpVRgv~FH~~qp--lFVSG-----GDDykIkVWnYk--~r--rclftL~GHlDY---VRt~~FHheyPWIlSA------ 111 (1202)
T KOG0292|consen 52 GPVRGVDFHPTQP--LFVSG-----GDDYKIKVWNYK--TR--RCLFTLLGHLDY---VRTVFFHHEYPWILSA------ 111 (1202)
T ss_pred CccceeeecCCCC--eEEec-----CCccEEEEEecc--cc--eehhhhccccce---eEEeeccCCCceEEEc------
Confidence 4789999999876 45542 234444555443 32 22222111 111 5567777777777755
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCC-ccccccccCCCCc
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEK 344 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk 344 (954)
+. ...|.+++- ++ .+..++.. ..+....|.|-..
T Consensus 112 ---------------SD----------------------------DQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED 148 (1202)
T KOG0292|consen 112 ---------------SD----------------------------DQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED 148 (1202)
T ss_pred ---------------cC----------------------------CCeEEEEeccCCceEEEEecCceEEEeeccCCccc
Confidence 11 122444454 44 45556655 6778889999888
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcc---------c--------CCccccccccCccceeec
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE---------D--------IPIAFNSVRKGMRSINWR 407 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~---------~--------~p~~~~~~~~g~~~~~ws 407 (954)
.|+..|. +++|.+||+.|-..+........+ + +-....++--|+...+|.
T Consensus 149 lIVSaSL-------------DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh 215 (1202)
T KOG0292|consen 149 LIVSASL-------------DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH 215 (1202)
T ss_pred eEEEecc-------------cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec
Confidence 8888773 458999999874433333221000 0 001234455566667777
Q ss_pred cCCCCceEEEEeccCCCccccccCC-CeEEEEecCCCCCCCc--eEEeecccccCceeeccCCceEEEEEeccccceEEE
Q 002194 408 SDKPSTLYWAETQDGGDAKVEVTPR-DIIYTQQAEPVQGEGP--EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (954)
Q Consensus 408 pDg~~i~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~g~~~--~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~ 484 (954)
|.-..|+-- + +.+ -.+|.++ ++..- ....++-..+.++.|.|....|+..+.++. .++|
T Consensus 216 pTlpliVSG------~------DDRqVKlWrmn----etKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks--irVw 277 (1202)
T KOG0292|consen 216 PTLPLIVSG------A------DDRQVKLWRMN----ETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS--IRVW 277 (1202)
T ss_pred CCcceEEec------C------CcceeeEEEec----cccceeehhhhcccCCcceEEecCccceeEecCCCcc--EEEE
Confidence 754432221 0 111 1456655 22221 122355667889999998887877766654 6677
Q ss_pred EEcCCC
Q 002194 485 VISPGS 490 (954)
Q Consensus 485 ~~d~~~ 490 (954)
.++-.+
T Consensus 278 Dm~kRt 283 (1202)
T KOG0292|consen 278 DMTKRT 283 (1202)
T ss_pred eccccc
Confidence 665544
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.025 Score=60.52 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=35.2
Q ss_pred ceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc
Q 002194 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (954)
Q Consensus 314 ~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~ 374 (954)
..||+++. ++..+.+... ....+++|||||+.++++-... +.|+.++.+
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~------------~~i~r~~~d 193 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA------------NRIHRYDLD 193 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCC------------CeEEEEecC
Confidence 46999997 4556666664 6667899999999888876332 266677665
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00091 Score=73.33 Aligned_cols=121 Identities=9% Similarity=0.158 Sum_probs=69.1
Q ss_pred cceEEEEEeCCceeEcCC--C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcc
Q 002194 313 TTQLVLVSLDGTVKEIGP--P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAE 388 (954)
Q Consensus 313 ~~~l~~~~~~G~~~~l~~--~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~ 388 (954)
...+++..++....+..- . +.+..+.|.|---++++.+.+ .+.+||+...+. +.+...-
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~--------------~vRiYdL~kqelvKkL~tg~--- 607 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR--------------SVRIYDLSKQELVKKLLTGS--- 607 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc--------------ceEEEehhHHHHHHHHhcCC---
Confidence 345666677443333322 2 667788999988888777633 788999875322 2222110
Q ss_pred cCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceee-----
Q 002194 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW----- 463 (954)
Q Consensus 389 ~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~----- 463 (954)
..+..++.+|.|..|+.. +....+..+|+ .+.+...+.|.-+...+.+++|
T Consensus 608 ----------kwiS~msihp~GDnli~g-------------s~d~k~~WfDl-dlsskPyk~lr~H~~avr~Va~H~ryP 663 (733)
T KOG0650|consen 608 ----------KWISSMSIHPNGDNLILG-------------SYDKKMCWFDL-DLSSKPYKTLRLHEKAVRSVAFHKRYP 663 (733)
T ss_pred ----------eeeeeeeecCCCCeEEEe-------------cCCCeeEEEEc-ccCcchhHHhhhhhhhhhhhhhccccc
Confidence 233567888988888776 34556777776 2333333444333333444433
Q ss_pred -----ccCCceEEEEE
Q 002194 464 -----CDDSLALVYES 474 (954)
Q Consensus 464 -----spDg~~l~~~~ 474 (954)
|+||..++|-.
T Consensus 664 Lfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 664 LFASGSDDGTVIVFHG 679 (733)
T ss_pred eeeeecCCCcEEEEee
Confidence 56677666654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.037 Score=68.55 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=62.9
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe-ecccccCceeeccCCceEEEEEeccc
Q 002194 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDDSLALVYESWYKT 478 (954)
Q Consensus 400 g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~spDg~~l~~~~~~~~ 478 (954)
+...++|..||+.++...-.... +.+..+.+|+- +| +..-.. ..++-...++|.|.|..|+......+
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~-------~~~R~iRVy~R---eG-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~ 279 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPET-------GSRRVIRVYSR---EG-ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPD 279 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCC-------CceeEEEEECC---Cc-eEEeccccCCCccCCccCCCCCCEEEEEEEcCC
Confidence 44569999999977765221111 12457778873 33 222221 22333456899999999988875333
Q ss_pred cceEEEEEcCCCCCCCcEEE-ecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 479 RRTRTWVISPGSKDVAPRIL-FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 479 ~~~~l~~~d~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
...|..+.-+|-....-.+ .+.....+.. +.|++|+..|+...
T Consensus 280 -~~~VvFfErNGLrhgeF~l~~~~~~~~v~~------l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 280 -RHDVVFFERNGLRHGEFTLRFDPEEEKVIE------LAWNSDSEILAVWL 323 (928)
T ss_pred -CcEEEEEecCCcEeeeEecCCCCCCceeeE------EEECCCCCEEEEEe
Confidence 3566666666521100111 1111112222 89999999999876
|
|
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0018 Score=60.89 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=77.3
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEE
Q 002194 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVH 837 (954)
Q Consensus 758 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~ 837 (954)
++.+++++||.|+.+++.++.+....++++++++|+---... ..+.....++|+ ...++.-|.++++
T Consensus 58 ~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~------------~~~~~~~tf~~~-p~~~lpfps~vva 124 (181)
T COG3545 58 EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPE------------IRPKHLMTFDPI-PREPLPFPSVVVA 124 (181)
T ss_pred CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccccc------------cchhhccccCCC-ccccCCCceeEEE
Confidence 456999999999999999998876789999999985210000 000111122221 1233456899999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC--CcccHHHHHHHHHHHHH
Q 002194 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA--ARESIMHVLWETDRWLQ 895 (954)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~--~~~~~~~~~~~i~~fl~ 895 (954)
+.+|+.|+ ++++..+.++... .++....+||... ......+.+..+.+|+.
T Consensus 125 SrnDp~~~--~~~a~~~a~~wgs-----~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s 177 (181)
T COG3545 125 SRNDPYVS--YEHAEDLANAWGS-----ALVDVGEGGHINAESGFGPWPEGYALLAQLLS 177 (181)
T ss_pred ecCCCCCC--HHHHHHHHHhccH-----hheecccccccchhhcCCCcHHHHHHHHHHhh
Confidence 99999999 9999999887753 5666777888642 22233344444444443
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0022 Score=70.38 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=41.0
Q ss_pred cCCCCCCEEEEEeCCCCCCCCchHHHHHHH-------HHHHhCCCcEEEEEeCCCCCcC
Q 002194 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFF-------NALKGHGALCRLVILPFESHGY 877 (954)
Q Consensus 826 ~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~-------~~l~~~g~~~~~~~~~~~~H~~ 877 (954)
+++|++|+.+++|..|.+.| +.|+..+. +.++..|..+-+.+.+..||.-
T Consensus 293 Lr~Ir~Piivfas~gDnITP--P~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHLG 349 (581)
T PF11339_consen 293 LRNIRSPIIVFASYGDNITP--PQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHLG 349 (581)
T ss_pred hhhCCCCEEEEeccCCCCCC--hhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCceE
Confidence 46789999999999999998 99986554 4456677778888889999964
|
Their function is unknown. |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0079 Score=65.49 Aligned_cols=70 Identities=7% Similarity=0.020 Sum_probs=46.7
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe-ecccccCceeeccCCceEEEEEeccc
Q 002194 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDDSLALVYESWYKT 478 (954)
Q Consensus 400 g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~spDg~~l~~~~~~~~ 478 (954)
.+..+.|||||+.++.. +.++-|.+++. +..+..-+. ..-+..--+.||||||+|+...+++-
T Consensus 292 ~in~f~FS~DG~~LA~V-------------SqDGfLRvF~f---dt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL 355 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATV-------------SQDGFLRIFDF---DTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL 355 (636)
T ss_pred cccceeEcCCCceEEEE-------------ecCceEEEeec---cHHHHHHHHHhhccceEEEEEcCCccEEEecCCcce
Confidence 55779999999998887 45666777774 433222111 11223345899999999999877664
Q ss_pred cceEEEEEc
Q 002194 479 RRTRTWVIS 487 (954)
Q Consensus 479 ~~~~l~~~d 487 (954)
..+|.+.
T Consensus 356 --VtVwSf~ 362 (636)
T KOG2394|consen 356 --VTVWSFE 362 (636)
T ss_pred --EEEEEec
Confidence 5667664
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00082 Score=71.98 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=63.5
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 782 (954)
.....++++|..|+.. +..+-........+-....+++..+++.+++.-. .++|-++|+|.||.+...+++..+.
T Consensus 130 s~V~~l~~~g~~vfvI---sw~nPd~~~~~~~~edYi~e~l~~aid~v~~itg--~~~InliGyCvGGtl~~~ala~~~~ 204 (445)
T COG3243 130 SLVRWLLEQGLDVFVI---SWRNPDASLAAKNLEDYILEGLSEAIDTVKDITG--QKDINLIGYCVGGTLLAAALALMAA 204 (445)
T ss_pred cHHHHHHHcCCceEEE---eccCchHhhhhccHHHHHHHHHHHHHHHHHHHhC--ccccceeeEecchHHHHHHHHhhhh
Confidence 4577889999999983 2222222333344545666888899999988743 2589999999999999999998877
Q ss_pred c-ccEEEEeccCCC
Q 002194 783 L-FCCGIARSGAYN 795 (954)
Q Consensus 783 ~-~~a~v~~~~~~~ 795 (954)
+ ++.+.......|
T Consensus 205 k~I~S~T~lts~~D 218 (445)
T COG3243 205 KRIKSLTLLTSPVD 218 (445)
T ss_pred cccccceeeecchh
Confidence 6 777776665444
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0054 Score=65.94 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=93.1
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..++.+.+.-...+||..+.. ++|.|..+.++.. .+++...+ ..++-+.|||-.
T Consensus 122 stvt~v~YN~~DeyiAsvs~g-------------Gdiiih~~~t~~~tt~f~~~sg------------qsvRll~ys~sk 176 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSDG-------------GDIIIHGTKTKQKTTTFTIDSG------------QSVRLLRYSPSK 176 (673)
T ss_pred ceeEEEEecCCcceeEEeccC-------------CcEEEEecccCccccceecCCC------------CeEEEeeccccc
Confidence 445555666667788887733 3777777775542 22332111 234678899988
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCce--EEeecccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE--ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~--~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
+.++.. ++..+.|.+||+ +|..+. ....+.....++.|||-...|+.+...+ .+|+++|.
T Consensus 177 r~lL~~------------asd~G~VtlwDv---~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D---kki~~yD~ 238 (673)
T KOG4378|consen 177 RFLLSI------------ASDKGAVTLWDV---QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD---KKINIYDI 238 (673)
T ss_pred ceeeEe------------eccCCeEEEEec---cCCCcccchhhhccCCcCcceecCCccceEEEeccc---ceEEEeec
Confidence 766654 144668999996 554432 2245566778999999988887776655 46888887
Q ss_pred CCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 489 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
........+..+.+... ++|+++|.+|+...
T Consensus 239 ~s~~s~~~l~y~~Plst---------vaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 239 RSQASTDRLTYSHPLST---------VAFSECGTYLCAGN 269 (673)
T ss_pred ccccccceeeecCCcce---------eeecCCceEEEeec
Confidence 76433333444444433 88999999988775
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00093 Score=64.26 Aligned_cols=116 Identities=9% Similarity=0.052 Sum_probs=71.4
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC---CCCccccchhhhcHHHHHhcCcccccCCCCCCEEE
Q 002194 759 SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP---FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILL 835 (954)
Q Consensus 759 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Li 835 (954)
++++|+|.|+||+.|.+++.++ . + .+|+++|.+.....- .+.+. +...+ ..+...+.. .+-.-..++
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~-g-~-~aVLiNPAv~P~~~L~~~ig~~~-~y~~~-~~~h~~eL~-----~~~p~r~~v 129 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLC-G-I-RQVIFNPNLFPEENMEGKIDRPE-EYADI-ATKCVTNFR-----EKNRDRCLV 129 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHH-C-C-CEEEECCCCChHHHHHHHhCCCc-chhhh-hHHHHHHhh-----hcCcccEEE
Confidence 4699999999999999999998 3 4 456667765532110 01111 11111 111111111 111234699
Q ss_pred EEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 836 i~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+..+.|++.+ +.++.+.|... .+..+.+|.+|.|... ++.+..|.+|+.
T Consensus 130 llq~gDEvLD--yr~a~~~y~~~------y~~~v~~GGdH~f~~f---e~~l~~I~~F~~ 178 (180)
T PRK04940 130 ILSRNDEVLD--SQRTAEELHPY------YEIVWDEEQTHKFKNI---SPHLQRIKAFKT 178 (180)
T ss_pred EEeCCCcccC--HHHHHHHhccC------ceEEEECCCCCCCCCH---HHHHHHHHHHHh
Confidence 9999999988 77766655432 2577899999998643 566788888874
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.068 Score=61.33 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=28.0
Q ss_pred eEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC
Q 002194 326 KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (954)
Q Consensus 326 ~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g 375 (954)
..|.-+....++.+||||++++.+.... .++.++|++.
T Consensus 315 ~yIPVGKsPHGV~vSPDGkylyVanklS------------~tVSVIDv~k 352 (635)
T PRK02888 315 RYVPVPKNPHGVNTSPDGKYFIANGKLS------------PTVTVIDVRK 352 (635)
T ss_pred EEEECCCCccceEECCCCCEEEEeCCCC------------CcEEEEEChh
Confidence 3344446677899999999999887443 3788888874
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0037 Score=60.89 Aligned_cols=199 Identities=13% Similarity=0.149 Sum_probs=121.1
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
+.+..+.+.-||++.+....++ .+.+|+.-.+ -++....+. ..+...+-+.|.
T Consensus 18 gaV~avryN~dGnY~ltcGsdr-------------tvrLWNp~rg~liktYsghG-------------~EVlD~~~s~Dn 71 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDR-------------TVRLWNPLRGALIKTYSGHG-------------HEVLDAALSSDN 71 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCc-------------eEEeecccccceeeeecCCC-------------ceeeeccccccc
Confidence 4566677888999988776443 8899987744 445444332 123455666666
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
.+++-- ++...+++||+ .+|...+++..+...++.+.|..+...++..+.+.. .++|.-....
T Consensus 72 skf~s~-------------GgDk~v~vwDV--~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s--~r~wDCRS~s 134 (307)
T KOG0316|consen 72 SKFASC-------------GGDKAVQVWDV--NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSS--VRLWDCRSRS 134 (307)
T ss_pred cccccC-------------CCCceEEEEEc--ccCeeeeecccccceeeEEEecCcceEEEeccccce--eEEEEcccCC
Confidence 655433 34557899997 455566888888899999999888776665554433 5666555444
Q ss_pred CCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEecc
Q 002194 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570 (954)
Q Consensus 491 ~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 570 (954)
.+|.++.+.....+.+ .--.+..|+..+. ...+..||+.-|... .
T Consensus 135 --~ePiQildea~D~V~S--------i~v~~heIvaGS~---------------------DGtvRtydiR~G~l~---s- 179 (307)
T KOG0316|consen 135 --FEPIQILDEAKDGVSS--------IDVAEHEIVAGSV---------------------DGTVRTYDIRKGTLS---S- 179 (307)
T ss_pred --CCccchhhhhcCceeE--------EEecccEEEeecc---------------------CCcEEEEEeecceee---h-
Confidence 5777776654433221 2222333333331 123777887665421 1
Q ss_pred CcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCce
Q 002194 571 DKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (954)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~ 621 (954)
+|+..... ..+||+|++-.+...-. ..+.++|-.+|+.
T Consensus 180 ---Dy~g~pit------~vs~s~d~nc~La~~l~----stlrLlDk~tGkl 217 (307)
T KOG0316|consen 180 ---DYFGHPIT------SVSFSKDGNCSLASSLD----STLRLLDKETGKL 217 (307)
T ss_pred ---hhcCCcce------eEEecCCCCEEEEeecc----ceeeecccchhHH
Confidence 12222111 25699999987765543 4588988777764
|
|
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0013 Score=68.04 Aligned_cols=150 Identities=15% Similarity=0.095 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC-----CcccEEEEeccCCCCCCCCCCCc-----cc
Q 002194 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP-----HLFCCGIARSGAYNRTLTPFGFQ-----NE 806 (954)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p-----~~~~a~v~~~~~~~~~~~~~~~~-----~~ 806 (954)
.....=+..++.+|.++..+ +++-++||||||..++.++..+. ..+.-.|++++.++......... ..
T Consensus 83 ~~qa~wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~~~~~~ 160 (255)
T PF06028_consen 83 KKQAKWLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQNDLNK 160 (255)
T ss_dssp HHHHHHHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTTT-CST
T ss_pred HHHHHHHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchhhhhcc
Confidence 34455677889999998766 59999999999999999988752 14788899988887543211000 00
Q ss_pred cchhhhcHHHHHhcCcccccCCC--CCCEEEEEeC------CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC--CCCc
Q 002194 807 DRTLWEATSTYVEMSPFMSANKL--KKPILLVHGE------EDNNSGTLTMQSDRFFNALKGHGALCRLVILPF--ESHG 876 (954)
Q Consensus 807 ~~~~~~~~~~~~~~sp~~~~~~~--~~P~Lii~G~------~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~H~ 876 (954)
.+ +-.....|...-... -.++ ...+|-|.|. .|.+|| ...++.+...++...+.++-.++.| +.|.
T Consensus 161 ~g-p~~~~~~y~~l~~~~-~~~~p~~i~VLnI~G~~~~g~~sDG~V~--~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS 236 (255)
T PF06028_consen 161 NG-PKSMTPMYQDLLKNR-RKNFPKNIQVLNIYGDLEDGSNSDGIVP--NASSLSLRYLLKNRAKSYQEKTVTGKDAQHS 236 (255)
T ss_dssp T--BSS--HHHHHHHHTH-GGGSTTT-EEEEEEEESBTTCSBTSSSB--HHHHCTHHHHCTTTSSEEEEEEEESGGGSCC
T ss_pred cC-CcccCHHHHHHHHHH-HhhCCCCeEEEEEecccCCCCCCCeEEe--HHHHHHHHHHhhcccCceEEEEEECCCCccc
Confidence 11 111112222111000 0122 3569999998 899998 8888888888877777788888876 5787
Q ss_pred CCCcccHHHHHHHHHHHH
Q 002194 877 YAARESIMHVLWETDRWL 894 (954)
Q Consensus 877 ~~~~~~~~~~~~~i~~fl 894 (954)
-. .++ ..+.+.|.+||
T Consensus 237 ~L-heN-~~V~~~I~~FL 252 (255)
T PF06028_consen 237 QL-HEN-PQVDKLIIQFL 252 (255)
T ss_dssp GG-GCC-HHHHHHHHHHH
T ss_pred cC-CCC-HHHHHHHHHHh
Confidence 53 333 45567777776
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0014 Score=67.60 Aligned_cols=161 Identities=14% Similarity=0.207 Sum_probs=94.0
Q ss_pred EEEEEe--CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCC
Q 002194 316 LVLVSL--DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIP 391 (954)
Q Consensus 316 l~~~~~--~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p 391 (954)
|-++|. +-..+.+..+ ..+..+.|+|-...|+.+... +..|.|||+....+ +.+...
T Consensus 169 i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s------------DrsIvLyD~R~~~Pl~KVi~~------- 229 (433)
T KOG0268|consen 169 IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS------------DRSIVLYDLRQASPLKKVILT------- 229 (433)
T ss_pred eeecccccCCccceeecCCCceeEEecCCCcchheeeecc------------CCceEEEecccCCccceeeee-------
Confidence 334444 4455556555 667788899987777665522 23799999985432 333221
Q ss_pred ccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCce-EEeecccccCceeeccCCceE
Q 002194 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKLDLRYGGISWCDDSLAL 470 (954)
Q Consensus 392 ~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~-~l~~~~~~~~~~~~spDg~~l 470 (954)
-....++|+|.+ ..|.+. ++...+|.+|+-.+. .+. ...++-..+.++.|||-|+.+
T Consensus 230 -------mRTN~IswnPea--fnF~~a-----------~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 230 -------MRTNTICWNPEA--FNFVAA-----------NEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred -------ccccceecCccc--cceeec-----------cccccceehhhhhhc--ccchhhcccceeEEEeccCCCcchh
Confidence 123468999933 344311 334578888851111 111 112334456789999999999
Q ss_pred EEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 471 VYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+.++.++. .+||-++ .+. ...+......+.++. +.||-|.++|+..+
T Consensus 288 vsgsyDks--IRIf~~~--~~~-SRdiYhtkRMq~V~~------Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 288 VSGSYDKS--IRIFPVN--HGH-SRDIYHTKRMQHVFC------VKYSMDSKYIISGS 334 (433)
T ss_pred ccccccce--EEEeecC--CCc-chhhhhHhhhheeeE------EEEeccccEEEecC
Confidence 99887765 5555544 331 111222223333444 78999999988766
|
|
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.002 Score=67.94 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=65.0
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH---CCcEEEEcCCCCCCCCCCcccc-----h-hh--HHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA---RGFAILGGPTTPIIGEGDEEAN-----D-RF--VEQ 738 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~---~G~~V~~~~~~~~~G~G~~~~~-----~-~~--~~~ 738 (954)
.++++++-|.|. ...++..+...|-+ ..|.|+. .+..|+...... . .. ...
T Consensus 2 ~~li~~IPGNPG---------------lv~fY~~Fl~~L~~~l~~~~~i~~---ish~Gh~~~~~~~~~~~~~~~~sL~~ 63 (266)
T PF10230_consen 2 RPLIVFIPGNPG---------------LVEFYEEFLSALYEKLNPQFEILG---ISHAGHSTSPSNSKFSPNGRLFSLQD 63 (266)
T ss_pred cEEEEEECCCCC---------------hHHHHHHHHHHHHHhCCCCCeeEE---ecCCCCcCCcccccccCCCCccCHHH
Confidence 467888888762 22334445555543 4788888 444554333222 1 11 222
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC---CcccEEEEeccCC
Q 002194 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGAY 794 (954)
Q Consensus 739 ~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~~ 794 (954)
-++-..+.++.+.....-...++.++|||.|++|++.++-+.+ ..++.++...|..
T Consensus 64 QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 64 QIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred HHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 2333344444444432113468999999999999999999998 5788888888753
|
|
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0046 Score=66.87 Aligned_cols=137 Identities=18% Similarity=0.143 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHHHHHHHcCC--CCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC--CC---CCC----
Q 002194 734 RFVEQLVACAEAAVEEVVRRGV--AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT--LT---PFG---- 802 (954)
Q Consensus 734 ~~~~~~~~D~~~av~~l~~~~~--~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~--~~---~~~---- 802 (954)
+++--...|++.|+.++.++-. -+.-++.++|+|+||++|..++--.|..|.+++--++..-.. +. +.+
T Consensus 157 N~GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y 236 (403)
T PF11144_consen 157 NFGIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKY 236 (403)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCcccc
Confidence 3444456889999999988722 223489999999999999999999999999998766532210 00 000
Q ss_pred -----C--------ccccchhhhc---------HHHHHhcCccc-----ccCCC-CCC-EEEEEeCCCCCCCCchHHHHH
Q 002194 803 -----F--------QNEDRTLWEA---------TSTYVEMSPFM-----SANKL-KKP-ILLVHGEEDNNSGTLTMQSDR 853 (954)
Q Consensus 803 -----~--------~~~~~~~~~~---------~~~~~~~sp~~-----~~~~~-~~P-~Lii~G~~D~~v~~~~~~~~~ 853 (954)
+ ..-..+.|.. .+.+.-.+.++ -.++. +.| ....|+..|..+| .++-.+
T Consensus 237 ~~~~~~~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p--~~~K~~ 314 (403)
T PF11144_consen 237 ICSGEFFNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAP--AEDKEE 314 (403)
T ss_pred cccccccccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCC--HHHHHH
Confidence 0 0011334432 11111111110 01112 234 5567999999999 999999
Q ss_pred HHHHHHhCCCcEEEEEeCC
Q 002194 854 FFNALKGHGALCRLVILPF 872 (954)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~ 872 (954)
+++.++..|-+++++.+.+
T Consensus 315 l~~~l~~lgfda~l~lIkd 333 (403)
T PF11144_consen 315 LYEILKNLGFDATLHLIKD 333 (403)
T ss_pred HHHHHHHcCCCeEEEEecC
Confidence 9999999999999998843
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.064 Score=61.13 Aligned_cols=108 Identities=19% Similarity=0.302 Sum_probs=67.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCce--eeeecCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE--IEIQGFPD 187 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~--~~lt~~~~ 187 (954)
....+++|||++.+|++.+. .++.+. .|.+.++.+ +.. ..++
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~----------------------~G~e~y------~lr~kdL~t----g~~~~d~i~---- 173 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDV----------------------LGDEQY------TLRFKDLAT----GEELPDEIT---- 173 (682)
T ss_pred eeeeeeeCCCCceEEEEEec----------------------ccccEE------EEEEEeccc----ccccchhhc----
Confidence 45678999999999999773 333333 788989865 332 1121
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC--CceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT--GKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
......+|.+||+.+.|++..+ ..-...||...+.+ .+.+.+...++..+ +-++.-|.+.+.|++.
T Consensus 174 -~~~~~~~Wa~d~~~lfYt~~d~----~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f---~~~v~~s~s~~yi~i~ 241 (682)
T COG1770 174 -NTSGSFAWAADGKTLFYTRLDE----NHRPDKVWRHRLGTPGSSDELVYEEKDDRF---FLSVGRSRSEAYIVIS 241 (682)
T ss_pred -ccccceEEecCCCeEEEEEEcC----CCCcceEEEEecCCCCCcceEEEEcCCCcE---EEEeeeccCCceEEEE
Confidence 1256689999999999998633 22356788877766 44444544333321 2244445556666655
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.011 Score=60.17 Aligned_cols=216 Identities=13% Similarity=0.074 Sum_probs=116.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCC--eEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGK--HLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI 240 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~--~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 240 (954)
..|.|+|+...- +...|.. +.+.++...|.|+-. +|+-.+ ++.+|.++++..=+...-....
T Consensus 63 etI~IYDm~k~~---qlg~ll~--HagsitaL~F~~~~S~shLlS~s---------dDG~i~iw~~~~W~~~~slK~H-- 126 (362)
T KOG0294|consen 63 ETIHIYDMRKRK---QLGILLS--HAGSITALKFYPPLSKSHLLSGS---------DDGHIIIWRVGSWELLKSLKAH-- 126 (362)
T ss_pred CcEEEEeccchh---hhcceec--cccceEEEEecCCcchhheeeec---------CCCcEEEEEcCCeEEeeeeccc--
Confidence 589999985421 1112221 224688888888775 777754 2455666664332211111111
Q ss_pred cccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEE
Q 002194 241 YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (954)
Q Consensus 241 ~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~ 320 (954)
.+.+..++..|.|++-.... +...|-.+|
T Consensus 127 --~~~Vt~lsiHPS~KLALsVg-------------------------------------------------~D~~lr~WN 155 (362)
T KOG0294|consen 127 --KGQVTDLSIHPSGKLALSVG-------------------------------------------------GDQVLRTWN 155 (362)
T ss_pred --ccccceeEecCCCceEEEEc-------------------------------------------------CCceeeeeh
Confidence 22277888999998555440 223355677
Q ss_pred e-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCcccccc
Q 002194 321 L-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSV 397 (954)
Q Consensus 321 ~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~ 397 (954)
+ .|+...+.+- .....+.|+|.|.+.+....+ .|-+|.++... .+.+....
T Consensus 156 LV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~--------------~i~i~q~d~A~v~~~i~~~~------------ 209 (362)
T KOG0294|consen 156 LVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN--------------KIDIYQLDNASVFREIENPK------------ 209 (362)
T ss_pred hhcCccceeeccCCcceeeEEcCCCCEEEEEecc--------------EEEEEecccHhHhhhhhccc------------
Confidence 7 7754444333 344558999999988777632 56677766322 12222210
Q ss_pred ccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCcee-e-ccCCceEEEEEe
Q 002194 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGIS-W-CDDSLALVYESW 475 (954)
Q Consensus 398 ~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~-~-spDg~~l~~~~~ 475 (954)
..-.+.|- ++..++.- .....+-++|- .+......+..+..++-++. + .|++.+|+.++.
T Consensus 210 --r~l~~~~l-~~~~L~vG-------------~d~~~i~~~D~--ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 210 --RILCATFL-DGSELLVG-------------GDNEWISLKDT--DSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred --cceeeeec-CCceEEEe-------------cCCceEEEecc--CCCccceeeecchhheeeeEEEecCCceEEEEecc
Confidence 00011121 12222221 11234556663 12233345566777776655 2 467877877765
Q ss_pred ccccceEEEEEcCCCC
Q 002194 476 YKTRRTRTWVISPGSK 491 (954)
Q Consensus 476 ~~~~~~~l~~~d~~~~ 491 (954)
++ ...+|.++.++.
T Consensus 272 DG--~I~vWd~~~~~k 285 (362)
T KOG0294|consen 272 DG--FIKVWDIDMETK 285 (362)
T ss_pred Cc--eEEEEEcccccc
Confidence 54 378999888865
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.11 Score=62.16 Aligned_cols=266 Identities=15% Similarity=0.099 Sum_probs=136.5
Q ss_pred cCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCC
Q 002194 107 DAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP 186 (954)
Q Consensus 107 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~ 186 (954)
.......+.|||||+.++|...+ +... ..+|+.++. | .++..
T Consensus 58 ~~~~~~~~~~spdg~~~~~~~~~-----------------------~~~~------~~l~l~~~~--g------~~~~~- 99 (620)
T COG1506 58 FGGGVSELRWSPDGSVLAFVSTD-----------------------GGRV------AQLYLVDVG--G------LITKT- 99 (620)
T ss_pred cCCcccccccCCCCCEEEEEecc-----------------------CCCc------ceEEEEecC--C------ceeee-
Confidence 34467788999999999999843 0011 367887652 2 22211
Q ss_pred CCCcccceeecCCCCeEEEEEeecc-c----------------cCC-CCceEEEEEECCCCceeecccCCCccccccccc
Q 002194 187 DGAKLNFVTWSQDGKHLAFSIRIDA-E----------------DSS-SSKLRVWVADVDTGKARPLFQSPDIYLNAIFDN 248 (954)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~-~----------------~~~-~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~ 248 (954)
...+..+.|+|+|+.++|...... . ... ....++|++|.++ ....+...... +..
T Consensus 100 -~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~~~~~~~-----~~~ 172 (620)
T COG1506 100 -AFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES-KLIKLGLGNLD-----VVS 172 (620)
T ss_pred -ecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc-ccccccCCCCc-----eee
Confidence 135788999999999999321110 0 011 1456777777665 33333322222 345
Q ss_pred eeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE
Q 002194 249 FVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE 327 (954)
Q Consensus 249 ~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~ 327 (954)
+.|.+|++.++......... + .....+.... ++.+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~---------------------------------~---------~~~~~~~~~~~~~~~~~ 210 (620)
T COG1506 173 FATDGDGRLVASIRLDDDAD---------------------------------P---------WVTNLYVLIEGNGELES 210 (620)
T ss_pred eeeCCCCceeEEeeeccccC---------------------------------C---------ceEeeEEEecCCCceEE
Confidence 55666677776652111100 0 1122333333 667777
Q ss_pred cCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceee
Q 002194 328 IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINW 406 (954)
Q Consensus 328 l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~w 406 (954)
++.. .....+.|.+||+.+++.....+.. ......+++++.+.++....... .+ .. .+.....+
T Consensus 211 ~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~d~~~~~--~~--~~------~~~~~~~~ 275 (620)
T COG1506 211 LTPGEGSISKLAFDADGKSIALLGTESDRG-----LAEGDFILLLDGELGEVDGDLSS--GD--DT------RGAWAVEG 275 (620)
T ss_pred EcCCCceeeeeeeCCCCCeeEEeccCCccC-----ccccceEEEEeccccccceeecc--CC--cc------cCcHHhcc
Confidence 7766 6788899999999999988665421 11223455555222222221110 00 00 01111223
Q ss_pred ccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEE
Q 002194 407 RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 407 spDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (954)
.-++..++|.+... .+...++...... +....+......+. .|+.+++.+++.........++|++
T Consensus 276 ~~~~~~~~~~~~~~-----------~g~~~l~~~~~~~-~~~~~~~~~~~~v~--~f~~~~~~~~~~~s~~~~p~~i~~~ 341 (620)
T COG1506 276 GLDGDGLLFIATDG-----------GGSSPLFRVDDLG-GGVEGLSGDDGGVP--GFDVDGRKLALAYSSPTEPPEIYLY 341 (620)
T ss_pred ccCCCcEEEEEecC-----------CCceEEEEEeccC-CceeeecCCCceEE--EEeeCCCEEEEEecCCCCccceEEE
Confidence 34555555553221 1223333321112 22222222223333 4555999998887655545778888
Q ss_pred cC
Q 002194 487 SP 488 (954)
Q Consensus 487 d~ 488 (954)
+.
T Consensus 342 ~~ 343 (620)
T COG1506 342 DR 343 (620)
T ss_pred cC
Confidence 86
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00086 Score=79.28 Aligned_cols=143 Identities=17% Similarity=0.225 Sum_probs=87.4
Q ss_pred cceEEEEEeCCceeEcCCC-----ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCC
Q 002194 313 TTQLVLVSLDGTVKEIGPP-----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPL 386 (954)
Q Consensus 313 ~~~l~~~~~~G~~~~l~~~-----~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~ 386 (954)
.++|+++|+..-.+..+.+ ..+..++|...-.+|+.+... .+...|||++.++ +-.+.....
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~------------sg~~~iWDlr~~~pii~ls~~~~ 205 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSP------------SGRAVIWDLRKKKPIIKLSDTPG 205 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCC------------CCCceeccccCCCcccccccCCC
Confidence 4568899984332333221 556667777666666554422 2367799999653 223333221
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccC
Q 002194 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466 (954)
Q Consensus 387 ~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spD 466 (954)
. .....++|.||...-+...... +..-.|-+||+ -......+.++.+...+-++.|++.
T Consensus 206 ~-----------~~~S~l~WhP~~aTql~~As~d---------d~~PviqlWDl-R~assP~k~~~~H~~GilslsWc~~ 264 (1049)
T KOG0307|consen 206 R-----------MHCSVLAWHPDHATQLLVASGD---------DSAPVIQLWDL-RFASSPLKILEGHQRGILSLSWCPQ 264 (1049)
T ss_pred c-----------cceeeeeeCCCCceeeeeecCC---------CCCceeEeecc-cccCCchhhhcccccceeeeccCCC
Confidence 1 1245799999998665552221 12335667775 1234445666778888889999999
Q ss_pred CceEEEEEeccccceEEEEEcCCCC
Q 002194 467 SLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+..++.++..++ ++...+.+++
T Consensus 265 D~~lllSsgkD~---~ii~wN~~tg 286 (1049)
T KOG0307|consen 265 DPRLLLSSGKDN---RIICWNPNTG 286 (1049)
T ss_pred CchhhhcccCCC---CeeEecCCCc
Confidence 877777776664 5778888775
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0025 Score=66.26 Aligned_cols=135 Identities=16% Similarity=0.126 Sum_probs=83.6
Q ss_pred eceEEEEccCCCCCCceeeeecCC----CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCC
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFP----DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP 238 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~----~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~ 238 (954)
..|||+|+++ -+.|..+. ........+.++++.+|||-..+ ...+|.++|+..-+..-.....
T Consensus 106 e~IyIydI~~------MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-------t~GdV~l~d~~nl~~v~~I~aH 172 (391)
T KOG2110|consen 106 ESIYIYDIKD------MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-------TSGDVVLFDTINLQPVNTINAH 172 (391)
T ss_pred ccEEEEeccc------ceeehhhhccCCCccceEeeccCCCCceEEecCCC-------CCceEEEEEcccceeeeEEEec
Confidence 4799999953 23332221 11134445556667799995432 2678888887764443333333
Q ss_pred CccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEE
Q 002194 239 DIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (954)
Q Consensus 239 ~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~ 318 (954)
... +..++|++||..|+.++. ...-|.+
T Consensus 173 ~~~----lAalafs~~G~llATASe------------------------------------------------KGTVIRV 200 (391)
T KOG2110|consen 173 KGP----LAALAFSPDGTLLATASE------------------------------------------------KGTVIRV 200 (391)
T ss_pred CCc----eeEEEECCCCCEEEEecc------------------------------------------------CceEEEE
Confidence 322 668999999999997611 1112334
Q ss_pred EEe-CCc-eeEcCCC---ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC
Q 002194 319 VSL-DGT-VKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (954)
Q Consensus 319 ~~~-~G~-~~~l~~~---~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g 375 (954)
+.+ +|+ ..++-.+ ..+.+.+||||+++|..+++.+ +|.++.++.
T Consensus 201 f~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te-------------TVHiFKL~~ 249 (391)
T KOG2110|consen 201 FSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE-------------TVHIFKLEK 249 (391)
T ss_pred EEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC-------------eEEEEEecc
Confidence 455 663 3334333 5678999999999999998654 788887763
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.25 Score=53.83 Aligned_cols=59 Identities=10% Similarity=0.183 Sum_probs=39.6
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeec---ccCCCccccccccceeEecCCeEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL---FQSPDIYLNAIFDNFVWVNNSTLLV 259 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l---t~~~~~~~~~~~~~~~wspDG~~l~ 259 (954)
+.+....|.|-+..|..+- |..+|+.++..++...+- ....+. ..+..++|.+||+.|-
T Consensus 201 e~v~~a~FHPtd~nliit~---------Gk~H~~Fw~~~~~~l~k~~~~fek~ek---k~Vl~v~F~engdviT 262 (626)
T KOG2106|consen 201 EVVFLATFHPTDPNLIITC---------GKGHLYFWTLRGGSLVKRQGIFEKREK---KFVLCVTFLENGDVIT 262 (626)
T ss_pred ceEEEEEeccCCCcEEEEe---------CCceEEEEEccCCceEEEeeccccccc---eEEEEEEEcCCCCEEe
Confidence 4577889999887777654 478999999988765332 222221 1255778888887554
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.025 Score=57.12 Aligned_cols=232 Identities=16% Similarity=0.224 Sum_probs=125.4
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCC-----eEEEEEeeccccCCCCceEEEEEECCCCceee---cc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGK-----HLAFSIRIDAEDSSSSKLRVWVADVDTGKARP---LF 235 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~-----~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~---lt 235 (954)
.|.|..+..++ ++......+...-.++-..|.||.+ .||.+ +...+||.++.+.++... |.
T Consensus 74 kvqiv~ld~~s--~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs---------~D~LRlWri~~ee~~~~~~~~L~ 142 (364)
T KOG0290|consen 74 KVQIVQLDEDS--GELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS---------SDFLRLWRIGDEESRVELQSVLN 142 (364)
T ss_pred eeEEEEEccCC--CceeccCCCCCCCCccceEecCCccccCcchhhcc---------cCeEEEEeccCcCCceehhhhhc
Confidence 45566664333 4433332222222567788999885 44443 236788988865544332 22
Q ss_pred cCCCccccccccceeEe-cCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccc
Q 002194 236 QSPDIYLNAIFDNFVWV-NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATT 314 (954)
Q Consensus 236 ~~~~~~~~~~~~~~~ws-pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~ 314 (954)
......+.+.+.++.|. -|-++|..+ +-+ .+-
T Consensus 143 ~~kns~~~aPlTSFDWne~dp~~igtS---------------------SiD--------------------------TTC 175 (364)
T KOG0290|consen 143 NNKNSEFCAPLTSFDWNEVDPNLIGTS---------------------SID--------------------------TTC 175 (364)
T ss_pred cCcccccCCcccccccccCCcceeEee---------------------ccc--------------------------CeE
Confidence 22333455667788897 344555544 111 334
Q ss_pred eEEEEEe--CC--ceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccC
Q 002194 315 QLVLVSL--DG--TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (954)
Q Consensus 315 ~l~~~~~--~G--~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~ 390 (954)
.||-+.. .| +.+.|.....+.+++|+.+|+.+..+- .. ++.+.++|+...+...|.-.......
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASv-ga-----------DGSvRmFDLR~leHSTIIYE~p~~~~ 243 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASV-GA-----------DGSVRMFDLRSLEHSTIIYEDPSPST 243 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEe-cC-----------CCcEEEEEecccccceEEecCCCCCC
Confidence 4555443 23 344455557888999999776654433 22 34788888876554433321111011
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceE
Q 002194 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (954)
Q Consensus 391 p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l 470 (954)
| .-.++|++........+ . .....|.++|+ -.-......|..+...+++++|.|-.+.-
T Consensus 244 p---------LlRLswnkqDpnymATf-~----------~dS~~V~iLDi-R~P~tpva~L~~H~a~VNgIaWaPhS~~h 302 (364)
T KOG0290|consen 244 P---------LLRLSWNKQDPNYMATF-A----------MDSNKVVILDI-RVPCTPVARLRNHQASVNGIAWAPHSSSH 302 (364)
T ss_pred c---------ceeeccCcCCchHHhhh-h----------cCCceEEEEEe-cCCCcceehhhcCcccccceEecCCCCce
Confidence 1 12356665443221110 1 11335666664 12333456677888999999999998776
Q ss_pred EEEEeccccceEEEEEc
Q 002194 471 VYESWYKTRRTRTWVIS 487 (954)
Q Consensus 471 ~~~~~~~~~~~~l~~~d 487 (954)
+.+..++- +.-||.++
T Consensus 303 ictaGDD~-qaliWDl~ 318 (364)
T KOG0290|consen 303 ICTAGDDC-QALIWDLQ 318 (364)
T ss_pred eeecCCcc-eEEEEecc
Confidence 66655553 35566554
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00038 Score=49.00 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=23.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~ 223 (954)
.....|+|||||++|+|++... +.+..+||+
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~----~~g~~diy~ 39 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRN----DRGSFDIYV 39 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT------SSEEEEE
T ss_pred ccccCEEEecCCCEEEEEecCC----CCCCcCEEC
Confidence 4688999999999999998743 147888885
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.046 Score=55.79 Aligned_cols=90 Identities=13% Similarity=0.155 Sum_probs=61.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.++.+.|||.+..|+.++.+ +.|.++++.. ...+.. +..+.
T Consensus 15 ~IS~v~f~~~~~~LLvssWD---------------------------------gslrlYdv~~----~~l~~~--~~~~~ 55 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWD---------------------------------GSLRLYDVPA----NSLKLK--FKHGA 55 (323)
T ss_pred ceeeEEEcCcCCcEEEEecc---------------------------------CcEEEEeccc----hhhhhh--eecCC
Confidence 46789999999999888876 5788999854 222222 33445
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEec
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN 253 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp 253 (954)
.+....|.+ -.++++ ++-...|-++|+.+++..++-.+... +.-+..++
T Consensus 56 plL~c~F~d-~~~~~~---------G~~dg~vr~~Dln~~~~~~igth~~~-----i~ci~~~~ 104 (323)
T KOG1036|consen 56 PLLDCAFAD-ESTIVT---------GGLDGQVRRYDLNTGNEDQIGTHDEG-----IRCIEYSY 104 (323)
T ss_pred ceeeeeccC-CceEEE---------eccCceEEEEEecCCcceeeccCCCc-----eEEEEeec
Confidence 677788886 446666 33467889999999988887655543 44455553
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.035 Score=58.03 Aligned_cols=136 Identities=14% Similarity=0.154 Sum_probs=85.7
Q ss_pred ceEEEEEe-CCc-eeEcC----CCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCC
Q 002194 314 TQLVLVSL-DGT-VKEIG----PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPL 386 (954)
Q Consensus 314 ~~l~~~~~-~G~-~~~l~----~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~ 386 (954)
.+||++|+ +-+ ...|. ++.+...+++++++-+|||-.... .++|.+||+..-+ +..+..+.
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t-----------~GdV~l~d~~nl~~v~~I~aH~- 173 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT-----------SGDVVLFDTINLQPVNTINAHK- 173 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-----------CceEEEEEcccceeeeEEEecC-
Confidence 34999998 543 22221 124555667777788999976443 3589999987532 22333322
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCC-eEEEEecCCCCCCCceEEeec--ccccCceee
Q 002194 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRD-IIYTQQAEPVQGEGPEILHKL--DLRYGGISW 463 (954)
Q Consensus 387 ~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~g~~~~~l~~~--~~~~~~~~~ 463 (954)
+..-.++|++||..|+-. +..+ .|.++.+ .+|....++..+ ...+.+++|
T Consensus 174 ------------~~lAalafs~~G~llATA-------------SeKGTVIRVf~v--~~G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 174 ------------GPLAALAFSPDGTLLATA-------------SEKGTVIRVFSV--PEGQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred ------------CceeEEEECCCCCEEEEe-------------ccCceEEEEEEc--CCccEeeeeeCCceeeEEEEEEE
Confidence 233468999999977665 3333 4455654 344444444222 345678999
Q ss_pred ccCCceEEEEEeccccceEEEEEcCCC
Q 002194 464 CDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 464 spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+||++.|..+++.++ .+|+.++...
T Consensus 227 s~ds~~L~~sS~TeT--VHiFKL~~~~ 251 (391)
T KOG2110|consen 227 SPDSQFLAASSNTET--VHIFKLEKVS 251 (391)
T ss_pred CCCCCeEEEecCCCe--EEEEEecccc
Confidence 999999999887765 7788877543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0027 Score=71.99 Aligned_cols=206 Identities=12% Similarity=0.158 Sum_probs=117.7
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCC-cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
+.|-+||++-. +..++|+.+.+.. .+...-|++---.|+.+.. .++...+| |+...+-...+....+.
T Consensus 110 G~i~vWdlnk~---~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGS------QDg~vK~~--DlR~~~S~~t~~~nSES 178 (839)
T KOG0269|consen 110 GVISVWDLNKS---IRNKLLTVFNEHERSANKLDFHSTEPNILISGS------QDGTVKCW--DLRSKKSKSTFRSNSES 178 (839)
T ss_pred CcEEEEecCcc---ccchhhhHhhhhccceeeeeeccCCccEEEecC------CCceEEEE--eeecccccccccccchh
Confidence 57889999532 2344554444333 7788899988778877543 34444445 55554555555444332
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
+.++.|+|--...|++..+. |.-++|-+.-
T Consensus 179 ----iRDV~fsp~~~~~F~s~~ds----------------------------------------------G~lqlWDlRq 208 (839)
T KOG0269|consen 179 ----IRDVKFSPGYGNKFASIHDS----------------------------------------------GYLQLWDLRQ 208 (839)
T ss_pred ----hhceeeccCCCceEEEecCC----------------------------------------------ceEEEeeccC
Confidence 77999997654444441100 2233443332
Q ss_pred -CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCcccccccc
Q 002194 322 -DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (954)
Q Consensus 322 -~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~ 399 (954)
+.-.++++.. +.+.-..|+|++.|||....+ +.+.||+..+.+..++...... .
T Consensus 209 p~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD-------------K~vkiWd~t~~~~~~~~tInTi-----------a 264 (839)
T KOG0269|consen 209 PDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD-------------KMVKIWDMTDSRAKPKHTINTI-----------A 264 (839)
T ss_pred chhHHHHhhcccCceEEEeecCCCceeeecCCC-------------ccEEEEeccCCCccceeEEeec-----------c
Confidence 3334555555 778889999999999987733 3899999997655443322111 1
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCC-CceEEeecccccCceeecc
Q 002194 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-GPEILHKLDLRYGGISWCD 465 (954)
Q Consensus 400 g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-~~~~l~~~~~~~~~~~~sp 465 (954)
-+..+.|.|+-+..+... .......|++||+ .-.= .-..+..+...+..++|-.
T Consensus 265 pv~rVkWRP~~~~hLAtc----------smv~dtsV~VWDv--rRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 265 PVGRVKWRPARSYHLATC----------SMVVDTSVHVWDV--RRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred eeeeeeeccCccchhhhh----------hccccceEEEEee--ccccccceeeeccCccccceeccC
Confidence 234688999888544331 1122446888886 1100 1122334444456667744
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.018 Score=61.62 Aligned_cols=229 Identities=11% Similarity=0.240 Sum_probs=129.2
Q ss_pred eceEEEEccCCCCCCc-------eeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc-----
Q 002194 163 TGIGIHQLFPDGKLGQ-------EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK----- 230 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~-------~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~----- 230 (954)
++++||+......... ..+|.++.. .....+|++.-.--+.+. ..+....+|-++..+.+
T Consensus 147 ~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~--eg~glsWn~~~~g~Lls~------~~d~~i~lwdi~~~~~~~~~~~ 218 (422)
T KOG0264|consen 147 GDVYVFDYTKHPSKPKASGECRPDLRLKGHEK--EGYGLSWNRQQEGTLLSG------SDDHTICLWDINAESKEDKVVD 218 (422)
T ss_pred CCEEEEEeccCCCcccccccCCCceEEEeecc--cccccccccccceeEeec------cCCCcEEEEeccccccCCcccc
Confidence 5889998864332111 125655443 245689998654333322 23445556655544332
Q ss_pred eeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccc
Q 002194 231 ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDY 310 (954)
Q Consensus 231 ~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~ 310 (954)
++.++.... ..+..++|.+-.+.+|.+..
T Consensus 219 p~~~~~~h~----~~VeDV~~h~~h~~lF~sv~----------------------------------------------- 247 (422)
T KOG0264|consen 219 PKTIFSGHE----DVVEDVAWHPLHEDLFGSVG----------------------------------------------- 247 (422)
T ss_pred ceEEeecCC----cceehhhccccchhhheeec-----------------------------------------------
Confidence 122222222 23778999987776765511
Q ss_pred cccceEEEEEe-CC--ceeEcCC-C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCC
Q 002194 311 YATTQLVLVSL-DG--TVKEIGP-P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP 385 (954)
Q Consensus 311 ~~~~~l~~~~~-~G--~~~~l~~-~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~ 385 (954)
..+.|.++|+ ++ +...... . +.+..++|+|=+.+|+.+... +++|.|||+..-.. .+
T Consensus 248 -dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~------------D~tV~LwDlRnL~~-~l---- 309 (422)
T KOG0264|consen 248 -DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA------------DKTVALWDLRNLNK-PL---- 309 (422)
T ss_pred -CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccC------------CCcEEEeechhccc-Cc----
Confidence 1234666676 43 1122221 1 667789999988887766532 34899999874221 11
Q ss_pred CcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCC---------CCCCceEEe---e
Q 002194 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV---------QGEGPEILH---K 453 (954)
Q Consensus 386 ~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~g~~~~~l~---~ 453 (954)
..+.+....+..+.|||+-..++... +..+++.+||+.-. +.+.+..|. +
T Consensus 310 ------h~~e~H~dev~~V~WSPh~etvLASS------------g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG 371 (422)
T KOG0264|consen 310 ------HTFEGHEDEVFQVEWSPHNETVLASS------------GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG 371 (422)
T ss_pred ------eeccCCCcceEEEEeCCCCCceeEec------------ccCCcEEEEeccccccccChhhhccCCcceeEEecC
Confidence 12334445667899999998877651 22446777775111 112233332 3
Q ss_pred cccccCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 454 LDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 454 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
+...+..++|.|..-+++.+..+++ -.+||.+.
T Consensus 372 H~~kV~DfsWnp~ePW~I~SvaeDN-~LqIW~~s 404 (422)
T KOG0264|consen 372 HTAKVSDFSWNPNEPWTIASVAEDN-ILQIWQMA 404 (422)
T ss_pred cccccccccCCCCCCeEEEEecCCc-eEEEeecc
Confidence 3445778999999988877766654 25677654
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.03 Score=58.64 Aligned_cols=239 Identities=14% Similarity=0.126 Sum_probs=134.7
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEe-cCC-e-EEEEEec
Q 002194 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV-NNS-T-LLVCTIP 263 (954)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~ws-pDG-~-~l~~~~~ 263 (954)
+..+++.+.-+ +++|+... ....+.+++..|....++..+.+. +..++|- +|. + .++.+
T Consensus 104 hdDWVSsv~~~--~~~Iltgs---------YDg~~riWd~~Gk~~~~~~Ght~~-----ik~v~~v~~n~~~~~fvsa-- 165 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGS---------YDGTSRIWDLKGKSIKTIVGHTGP-----IKSVAWVIKNSSSCLFVSA-- 165 (423)
T ss_pred chhhhhhhccc--CceEEEee---------cCCeeEEEecCCceEEEEecCCcc-----eeeeEEEecCCccceEEEe--
Confidence 33467776666 78998854 345566667777666666554443 6677786 332 2 23333
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc--eeEcC-CC-ccccccc
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIG-PP-AVYTSLD 338 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~--~~~l~-~~-~~~~~~~ 338 (954)
+.+ .+-.||.++. .-. ..... .. ..+.+++
T Consensus 166 -------------------s~D--------------------------qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVs 200 (423)
T KOG0313|consen 166 -------------------SMD--------------------------QTLRLWKWNVGENKVKALKVCRGHKRSVDSVS 200 (423)
T ss_pred -------------------cCC--------------------------ceEEEEEecCchhhhhHHhHhcccccceeEEE
Confidence 111 2334677765 221 11221 22 6778889
Q ss_pred cCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccC------------CCcccCCc-cccccccCcccee
Q 002194 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDL------------PLAEDIPI-AFNSVRKGMRSIN 405 (954)
Q Consensus 339 ~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~------------~~~~~~p~-~~~~~~~g~~~~~ 405 (954)
..+||.+++-.+- +..|-+|+.......++-.. ......|. ...++..-+.++.
T Consensus 201 v~~sgtr~~SgS~-------------D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~ 267 (423)
T KOG0313|consen 201 VDSSGTRFCSGSW-------------DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV 267 (423)
T ss_pred ecCCCCeEEeecc-------------cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE
Confidence 9999999888773 34788888332211111110 11112333 4456666778899
Q ss_pred eccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEE
Q 002194 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (954)
Q Consensus 406 wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (954)
|++ ...+|.. +....|.+||+ ..++....++ .......+..+|..+.|+..+.+. .|.+
T Consensus 268 w~d--~~v~yS~------------SwDHTIk~WDl--etg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr----~irl 326 (423)
T KOG0313|consen 268 WSD--ATVIYSV------------SWDHTIKVWDL--ETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDR----HIRL 326 (423)
T ss_pred EcC--CCceEee------------cccceEEEEEe--ecccceeeee-cCcceeEeecccccceeeecCCCC----ceee
Confidence 998 3355541 33557889997 3444443443 233456788999888888776543 3556
Q ss_pred EcCCCCCCCcEE-EecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 486 ISPGSKDVAPRI-LFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 486 ~d~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.|+.++.+.... -+-.+..-+.+ +.|+|-..+++...
T Consensus 327 ~DPR~~~gs~v~~s~~gH~nwVss------vkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 327 WDPRTGDGSVVSQSLIGHKNWVSS------VKWSPTNEFQLVSG 364 (423)
T ss_pred cCCCCCCCceeEEeeecchhhhhh------eecCCCCceEEEEE
Confidence 677665443322 23333333333 77888887766554
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.032 Score=54.98 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=81.6
Q ss_pred ccccccccCCCCcE--EEEEeecCCcccccccCCCCcceEEEeccCc---eEEEeccCCCcccCCccccccccCccceee
Q 002194 332 AVYTSLDPSPDEKY--ILISSIHRPYSFIVPCGRFPRQVGVWTTDGI---FVRELCDLPLAEDIPIAFNSVRKGMRSINW 406 (954)
Q Consensus 332 ~~~~~~~~SpDGk~--l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~---~~~~l~~~~~~~~~p~~~~~~~~g~~~~~w 406 (954)
..+.+++|.|.+-- |+..+. +++|.+.+.++. ....+. +.+..|+.+++|
T Consensus 103 ~SVNsV~wapheygl~LacasS-------------DG~vsvl~~~~~g~w~t~ki~------------~aH~~GvnsVsw 157 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACASS-------------DGKVSVLTYDSSGGWTTSKIV------------FAHEIGVNSVSW 157 (299)
T ss_pred ccceeecccccccceEEEEeeC-------------CCcEEEEEEcCCCCccchhhh------------hccccccceeee
Confidence 67788888887644 344442 236666666532 111111 134467889999
Q ss_pred ccC---CCCceEEEEeccCCCcccc-ccCCCeEEEEecCCCCCC---CceEEeecccccCceeeccCC----ceEEEEEe
Q 002194 407 RSD---KPSTLYWAETQDGGDAKVE-VTPRDIIYTQQAEPVQGE---GPEILHKLDLRYGGISWCDDS----LALVYESW 475 (954)
Q Consensus 407 spD---g~~i~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~g~---~~~~l~~~~~~~~~~~~spDg----~~l~~~~~ 475 (954)
.|- |..+ - .....+-..+. .+-.+.+-+|.. +.+ ..+.|..+..-++.++|+|.- .+|+..+.
T Consensus 158 apa~~~g~~~--~-~~~~~~~krlvSgGcDn~VkiW~~---~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 158 APASAPGSLV--D-QGPAAKVKRLVSGGCDNLVKIWKF---DSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cCcCCCcccc--c-cCcccccceeeccCCccceeeeec---CCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 985 4210 0 00000000011 012334445553 222 123356666668889999973 23555544
Q ss_pred ccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 476 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+++ .-||..+.+.+.-+.+++.+ ....++. ++||+.|..|+...
T Consensus 232 Dg~--viIwt~~~e~e~wk~tll~~-f~~~~w~------vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 232 DGT--VIIWTKDEEYEPWKKTLLEE-FPDVVWR------VSWSLSGNILAVSG 275 (299)
T ss_pred CCc--EEEEEecCccCccccccccc-CCcceEE------EEEeccccEEEEec
Confidence 443 67888885544333333332 2222333 88999999887765
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.038 Score=57.32 Aligned_cols=183 Identities=12% Similarity=0.067 Sum_probs=116.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
+++..+.+-|-.+|++. ++....+-++|+.+|+...-..+.-. .+..+++|+---++|...
T Consensus 152 gWVr~vavdP~n~wf~t---------gs~DrtikIwDlatg~LkltltGhi~----~vr~vavS~rHpYlFs~g------ 212 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFAT---------GSADRTIKIWDLATGQLKLTLTGHIE----TVRGVAVSKRHPYLFSAG------ 212 (460)
T ss_pred ceEEEEeeCCCceeEEe---------cCCCceeEEEEcccCeEEEeecchhh----eeeeeeecccCceEEEec------
Confidence 47888999998888776 34467788889999887533222211 266888998888888661
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE-cCCC-ccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-AVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~-l~~~-~~~~~~~~SpDGk~ 345 (954)
...++--+|+ ..+.-+ .... ..+..++..|--..
T Consensus 213 -------------------------------------------edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldv 249 (460)
T KOG0285|consen 213 -------------------------------------------EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDV 249 (460)
T ss_pred -------------------------------------------CCCeeEEEechhhhhHHHhccccceeEEEecccccee
Confidence 1234666777 444333 3333 56677788886666
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
|+..+.+ ..+.+||+.++. +..+..+. ..+.++.+.|-...++--
T Consensus 250 l~t~grD-------------st~RvWDiRtr~~V~~l~GH~-------------~~V~~V~~~~~dpqvit~-------- 295 (460)
T KOG0285|consen 250 LVTGGRD-------------STIRVWDIRTRASVHVLSGHT-------------NPVASVMCQPTDPQVITG-------- 295 (460)
T ss_pred EEecCCc-------------ceEEEeeecccceEEEecCCC-------------CcceeEEeecCCCceEEe--------
Confidence 6655532 378999999764 34444332 122344455433333322
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEE
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (954)
+....|.+||+ ..|.....++.+...+..++..|+...++.++
T Consensus 296 -----S~D~tvrlWDl--~agkt~~tlt~hkksvral~lhP~e~~fASas 338 (460)
T KOG0285|consen 296 -----SHDSTVRLWDL--RAGKTMITLTHHKKSVRALCLHPKENLFASAS 338 (460)
T ss_pred -----cCCceEEEeee--ccCceeEeeecccceeeEEecCCchhhhhccC
Confidence 44567889996 56777778888888888888888876555543
|
|
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00032 Score=83.10 Aligned_cols=126 Identities=25% Similarity=0.271 Sum_probs=80.6
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCC-CCCC---CC
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT-PIIG---EG 727 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~-~~~G---~G 727 (954)
++..+|.|..-..+ + +|++|++|||.+..+.... +..+. ....+..+..+|+.++|| |..| .|
T Consensus 97 LylNV~tp~~~~~~--~-~pV~V~iHGG~~~~gs~~~--------~~~~~--~~~~~~~~~VVvVt~~YRLG~lGF~st~ 163 (545)
T KOG1516|consen 97 LYLNVYTPQGCSES--K-LPVMVYIHGGGFQFGSASS--------FEIIS--PAYVLLLKDVVVVTINYRLGPLGFLSTG 163 (545)
T ss_pred ceEEEeccCCCccC--C-CCEEEEEeCCceeeccccc--------hhhcC--chhccccCCEEEEEecccceeceeeecC
Confidence 67788888752211 2 8999999999654433211 11111 122334456778876664 3333 22
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--CCCcccEEEEeccC
Q 002194 728 DEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGA 793 (954)
Q Consensus 728 ~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~ 793 (954)
.+.. .+...+.|+..|++|+.++ -.-||++|-|+|||+||..+..++.. ...+|+.+|..+|.
T Consensus 164 d~~~---~gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 164 DSAA---PGNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred CCCC---CCcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 2222 2344566999999999875 23699999999999999998776642 22578888888774
|
|
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=7.8e-05 Score=68.51 Aligned_cols=118 Identities=25% Similarity=0.295 Sum_probs=81.3
Q ss_pred HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCccc
Q 002194 745 AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFM 824 (954)
Q Consensus 745 ~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 824 (954)
+.-.|+++.. =|.+..+.|.||||+.|+.+..++|++|..+|+.+|++|....--++.+ +. .|. ++|.+
T Consensus 89 AyerYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yyd-------dD-v~y-nsP~d 157 (227)
T COG4947 89 AYERYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYD-------DD-VYY-NSPSD 157 (227)
T ss_pred HHHHHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhcccccc-------Cc-eee-cChhh
Confidence 3345666653 2356889999999999999999999999999999999885421111111 11 111 45555
Q ss_pred ccCCCCC----------CEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 002194 825 SANKLKK----------PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (954)
Q Consensus 825 ~~~~~~~----------P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (954)
++-.+.. -+.+..|..|+.. .+..++.+.|..+.++..+.+..+..|.+
T Consensus 158 ylpg~~dp~~l~rlr~~~~vfc~G~e~~~L----~~~~~L~~~l~dKqipaw~~~WggvaHdw 216 (227)
T COG4947 158 YLPGLADPFRLERLRRIDMVFCIGDEDPFL----DNNQHLSRLLSDKQIPAWMHVWGGVAHDW 216 (227)
T ss_pred hccCCcChHHHHHHhhccEEEEecCccccc----cchHHHHHHhccccccHHHHHhccccccc
Confidence 5544433 4677788888764 46778888888888887777777777765
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.1 Score=53.33 Aligned_cols=109 Identities=17% Similarity=0.282 Sum_probs=71.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.++.+.|||.+..|+.++ -++...|| ++...+.+........ +-.++|.++.+.+.-.
T Consensus 15 ~IS~v~f~~~~~~LLvss-------WDgslrlY--dv~~~~l~~~~~~~~p-----lL~c~F~d~~~~~~G~-------- 72 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSS-------WDGSLRLY--DVPANSLKLKFKHGAP-----LLDCAFADESTIVTGG-------- 72 (323)
T ss_pred ceeeEEEcCcCCcEEEEe-------ccCcEEEE--eccchhhhhheecCCc-----eeeeeccCCceEEEec--------
Confidence 689999999999888866 33444444 5555566555544443 5688898766544422
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~ 347 (954)
-..+|-++|+ +|...++..+ ..+..+..++--..++
T Consensus 73 ------------------------------------------~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vI 110 (323)
T KOG1036|consen 73 ------------------------------------------LDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVI 110 (323)
T ss_pred ------------------------------------------cCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEE
Confidence 2346888999 7877777766 7777777776433444
Q ss_pred EEeecCCcccccccCCCCcceEEEeccC
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g 375 (954)
..+ ++..|.+||...
T Consensus 111 sgs-------------WD~~ik~wD~R~ 125 (323)
T KOG1036|consen 111 SGS-------------WDKTIKFWDPRN 125 (323)
T ss_pred Ecc-------------cCccEEEEeccc
Confidence 333 455899999875
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.021 Score=61.18 Aligned_cols=240 Identities=16% Similarity=0.197 Sum_probs=130.1
Q ss_pred HHHhhcCCCCCCcee--cCCCCEEEEEecC--CCCCccccccccceeeeeeec-------CCCCCC-cceeeEeceEEEE
Q 002194 102 IREIVDAPPLPALSF--SPQRDKILFLKRR--ALPPLEELARPEEKLAGLRID-------GKCNTR-SRMSFYTGIGIHQ 169 (954)
Q Consensus 102 ~~~~~~~~~~~~~~~--SPDG~~laf~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~l~l~~ 169 (954)
+-+.--+|....+.- +|.|..++|-... +.+....-.+|+++|.+-.-+ ...... ...+....|.+|+
T Consensus 127 VnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwd 206 (422)
T KOG0264|consen 127 VNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWD 206 (422)
T ss_pred chhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEe
Confidence 333334444444333 7888888886543 333333355666666543321 111111 1122235789999
Q ss_pred ccCCCCCC---ceeee-ecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC--CceeecccCCCcccc
Q 002194 170 LFPDGKLG---QEIEI-QGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT--GKARPLFQSPDIYLN 243 (954)
Q Consensus 170 ~~~~g~~~---~~~~l-t~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~--g~~~~lt~~~~~~~~ 243 (954)
++..+... .++.+ .+ +...+..++|+|-.+.++-.. .....|.++|+.+ .+.........
T Consensus 207 i~~~~~~~~~~~p~~~~~~--h~~~VeDV~~h~~h~~lF~sv--------~dd~~L~iwD~R~~~~~~~~~~~ah~---- 272 (422)
T KOG0264|consen 207 INAESKEDKVVDPKTIFSG--HEDVVEDVAWHPLHEDLFGSV--------GDDGKLMIWDTRSNTSKPSHSVKAHS---- 272 (422)
T ss_pred ccccccCCccccceEEeec--CCcceehhhccccchhhheee--------cCCCeEEEEEcCCCCCCCcccccccC----
Confidence 96544311 11222 22 224788899999665443322 1256788888874 33333332222
Q ss_pred ccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--
Q 002194 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-- 321 (954)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-- 321 (954)
+.+..++|.|=+..|+.+. + ....|.++|+
T Consensus 273 ~~vn~~~fnp~~~~ilAT~--------------------S----------------------------~D~tV~LwDlRn 304 (422)
T KOG0264|consen 273 AEVNCVAFNPFNEFILATG--------------------S----------------------------ADKTVALWDLRN 304 (422)
T ss_pred CceeEEEeCCCCCceEEec--------------------c----------------------------CCCcEEEeechh
Confidence 2267889998877666551 1 1233556665
Q ss_pred -CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCC---ccccc
Q 002194 322 -DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP---IAFNS 396 (954)
Q Consensus 322 -~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p---~~~~~ 396 (954)
...+..+... ..+..+.|||+-+.|+.++.. ++.+.+||+..-...+- .....+..| +.--+
T Consensus 305 L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~------------D~rl~vWDls~ig~eq~-~eda~dgppEllF~HgG 371 (422)
T KOG0264|consen 305 LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT------------DRRLNVWDLSRIGEEQS-PEDAEDGPPELLFIHGG 371 (422)
T ss_pred cccCceeccCCCcceEEEEeCCCCCceeEeccc------------CCcEEEEeccccccccC-hhhhccCCcceeEEecC
Confidence 3344444444 778889999999998887743 34889999873111111 000011111 11224
Q ss_pred cccCccceeeccCCCCceEE
Q 002194 397 VRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 397 ~~~g~~~~~wspDg~~i~~~ 416 (954)
+...+..++|.|.-..++..
T Consensus 372 H~~kV~DfsWnp~ePW~I~S 391 (422)
T KOG0264|consen 372 HTAKVSDFSWNPNEPWTIAS 391 (422)
T ss_pred cccccccccCCCCCCeEEEE
Confidence 45567789999988876655
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.012 Score=67.63 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=54.4
Q ss_pred CCeEEEEecCCCCCCC-ceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCC
Q 002194 432 RDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510 (954)
Q Consensus 432 ~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~ 510 (954)
.-.|.++|+ .+.. .|.+-.+...+..+.||||||+|+.++.+.. .++|.+.+.. .--..+++.+...
T Consensus 555 df~I~vvD~---~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t--Ir~wDlpt~~--lID~~~vd~~~~s----- 622 (910)
T KOG1539|consen 555 DFSIRVVDV---VTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST--IRTWDLPTGT--LIDGLLVDSPCTS----- 622 (910)
T ss_pred ceeEEEEEc---hhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc--EEEEeccCcc--eeeeEecCCccee-----
Confidence 336788885 3322 3455667778899999999999999987754 5555554433 1112233333222
Q ss_pred CCCCeeeccCCcEEEEEEe
Q 002194 511 GSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 511 ~~~~~~~spdG~~l~~~~~ 529 (954)
++|||.|.+|+....
T Consensus 623 ----ls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 623 ----LSFSPNGDFLATVHV 637 (910)
T ss_pred ----eEECCCCCEEEEEEe
Confidence 889999999998874
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0089 Score=61.24 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=71.3
Q ss_pred cccceeecCCCCe----EEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCC
Q 002194 190 KLNFVTWSQDGKH----LAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (954)
Q Consensus 190 ~~~~~~wSPDG~~----iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~ 265 (954)
.-...+|+=|-.. +|. +.....|+++|+..++...-....+.. ++.+.+.|+.-.|+.+.
T Consensus 91 sfytcsw~yd~~~~~p~la~---------~G~~GvIrVid~~~~~~~~~~~ghG~s----INeik~~p~~~qlvls~--- 154 (385)
T KOG1034|consen 91 SFYTCSWSYDSNTGNPFLAA---------GGYLGVIRVIDVVSGQCSKNYRGHGGS----INEIKFHPDRPQLVLSA--- 154 (385)
T ss_pred ceEEEEEEecCCCCCeeEEe---------ecceeEEEEEecchhhhccceeccCcc----chhhhcCCCCCcEEEEe---
Confidence 4455788876552 222 224778999999887765443333332 67888888875454441
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-----cccccccc
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-----AVYTSLDP 339 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-----~~~~~~~~ 339 (954)
+. ...|-++++ ++.-.-+..+ +.+-+++|
T Consensus 155 -----------------Sk----------------------------D~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 155 -----------------SK----------------------------DHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred -----------------cC----------------------------CceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 11 112444455 5544444332 55678999
Q ss_pred CCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE
Q 002194 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (954)
Q Consensus 340 SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~ 378 (954)
|+||.+|+...++ ..|.+|+++.++.
T Consensus 190 ~~~gd~i~ScGmD-------------hslk~W~l~~~~f 215 (385)
T KOG1034|consen 190 SLDGDRIASCGMD-------------HSLKLWRLNVKEF 215 (385)
T ss_pred cCCCCeeeccCCc-------------ceEEEEecChhHH
Confidence 9999998877644 3889999886543
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.019 Score=67.86 Aligned_cols=82 Identities=23% Similarity=0.314 Sum_probs=51.7
Q ss_pred ceEEEEccCCCCCCceeee-ecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCC--ceeecccCCCc
Q 002194 164 GIGIHQLFPDGKLGQEIEI-QGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSPDI 240 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~l-t~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g--~~~~lt~~~~~ 240 (954)
+|.+.|. || ...+.+ .. +...+.+|.|||||++|||+... +.-++...||+.++++. ...+| +..
T Consensus 330 ~L~~~D~--dG--~n~~~ve~~--~~~~i~sP~~SPDG~~vAY~ts~---e~~~g~s~vYv~~L~t~~~~~vkl---~ve 397 (912)
T TIGR02171 330 NLAYIDY--TK--GASRAVEIE--DTISVYHPDISPDGKKVAFCTGI---EGLPGKSSVYVRNLNASGSGLVKL---PVE 397 (912)
T ss_pred eEEEEec--CC--CCceEEEec--CCCceecCcCCCCCCEEEEEEee---cCCCCCceEEEEehhccCCCceEe---ecc
Confidence 6888887 55 455555 32 33478999999999999995432 22346888999999863 33333 221
Q ss_pred cccccccceeEe--cCC-eEEEEE
Q 002194 241 YLNAIFDNFVWV--NNS-TLLVCT 261 (954)
Q Consensus 241 ~~~~~~~~~~ws--pDG-~~l~~~ 261 (954)
+ ...+.|- .+| ..|+|+
T Consensus 398 --~--aaiprwrv~e~gdt~ivyv 417 (912)
T TIGR02171 398 --N--AAIPRWRVLENGDTVIVYV 417 (912)
T ss_pred --c--ccccceEecCCCCeEEEEE
Confidence 1 2245564 666 455665
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.022 Score=56.36 Aligned_cols=205 Identities=11% Similarity=0.093 Sum_probs=118.2
Q ss_pred cccceeecC--CCCeEEEEEeeccccCCCCceEEEEEECCC-CceeecccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 190 KLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 190 ~~~~~~wSP--DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
.-..+.||| +++ ||....+. -+-.|+..|++.++++ +..+.+..... +..+-+++|++.-.-++++..
T Consensus 10 ~GysvqfSPf~~nr-LavAt~q~--yGl~G~G~L~ile~~~~~gi~e~~s~d~---~D~LfdV~Wse~~e~~~~~a~--- 80 (311)
T KOG0277|consen 10 HGYSVQFSPFVENR-LAVATAQH--YGLAGNGRLFILEVTDPKGIQECQSYDT---EDGLFDVAWSENHENQVIAAS--- 80 (311)
T ss_pred ccceeEecccccch-hheeehhh--cccccCceEEEEecCCCCCeEEEEeeec---ccceeEeeecCCCcceEEEEe---
Confidence 345678888 554 44443221 2235688999999963 33332222111 112558999987665555411
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeC---CceeEcCCC-ccccccccCCC
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD---GTVKEIGPP-AVYTSLDPSPD 342 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~---G~~~~l~~~-~~~~~~~~SpD 342 (954)
|.+.|-++|++ +.+..+.+. ..+.++.|++-
T Consensus 81 ---------------------------------------------GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 81 ---------------------------------------------GDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred ---------------------------------------------cCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence 23334455552 323333344 67788999997
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
-+.++.++. ++++|.+|+.+.. .++. |++.+.-+...+|||--..++..
T Consensus 116 ~r~~~ltsS------------WD~TiKLW~~~r~~Sv~T-------------f~gh~~~Iy~a~~sp~~~nlfas----- 165 (311)
T KOG0277|consen 116 RRRIFLTSS------------WDGTIKLWDPNRPNSVQT-------------FNGHNSCIYQAAFSPHIPNLFAS----- 165 (311)
T ss_pred cceeEEeec------------cCCceEeecCCCCcceEe-------------ecCCccEEEEEecCCCCCCeEEE-----
Confidence 777776662 3558999988733 2222 22333344567899866554433
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
.++.+.+.+||+ ...++...+..+...+-...|+.-...+++.+..++ .|+..|+..
T Consensus 166 -------~Sgd~~l~lwdv--r~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~---~vr~wDir~ 222 (311)
T KOG0277|consen 166 -------ASGDGTLRLWDV--RSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDN---LVRGWDIRN 222 (311)
T ss_pred -------ccCCceEEEEEe--cCCCceeEEEeccceeEeecccccCCcEEEecCCCc---eEEEEehhh
Confidence 144556777776 233455456666666777889998888888766553 244445443
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0069 Score=62.70 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=47.4
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC---
Q 002194 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--- 780 (954)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--- 780 (954)
+++.+...++.|... ...|.+.............++..+.+..... ..++.|+|||+||.+|..+|.+-
T Consensus 19 la~~l~~~~~~v~~i---~~~~~~~~~~~~~si~~la~~y~~~I~~~~~-----~gp~~L~G~S~Gg~lA~E~A~~Le~~ 90 (229)
T PF00975_consen 19 LARALPDDVIGVYGI---EYPGRGDDEPPPDSIEELASRYAEAIRARQP-----EGPYVLAGWSFGGILAFEMARQLEEA 90 (229)
T ss_dssp HHHHHTTTEEEEEEE---CSTTSCTTSHEESSHHHHHHHHHHHHHHHTS-----SSSEEEEEETHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCeEEEEEE---ecCCCCCCCCCCCCHHHHHHHHHHHhhhhCC-----CCCeeehccCccHHHHHHHHHHHHHh
Confidence 444443334667763 3334432223334455666555555433311 12899999999999999998642
Q ss_pred CCcccEEEEeccC
Q 002194 781 PHLFCCGIARSGA 793 (954)
Q Consensus 781 p~~~~a~v~~~~~ 793 (954)
...+..++++.+.
T Consensus 91 G~~v~~l~liD~~ 103 (229)
T PF00975_consen 91 GEEVSRLILIDSP 103 (229)
T ss_dssp T-SESEEEEESCS
T ss_pred hhccCceEEecCC
Confidence 2347777777743
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.086 Score=53.36 Aligned_cols=238 Identities=16% Similarity=0.165 Sum_probs=126.8
Q ss_pred cccceeec--CCCC-eEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 190 KLNFVTWS--QDGK-HLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 190 ~~~~~~wS--PDG~-~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
......|| ||.+ +||..+-. +.-+...+|.-.+.++++.......+. ...+..+.|.||.+-++
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~---Ee~~Nkvqiv~ld~~s~e~~~~a~fd~---~YP~tK~~wiPd~~g~~------- 112 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFI---EEYNNKVQIVQLDEDSGELVEDANFDH---PYPVTKLMWIPDSKGVY------- 112 (364)
T ss_pred ceeeeccccCCCcceeEEEeeec---cccCCeeEEEEEccCCCceeccCCCCC---CCCccceEecCCccccC-------
Confidence 44556777 4443 67765542 223345666777767777655433222 11255778998875332
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE---cC-----CC-ccccc
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE---IG-----PP-AVYTS 336 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~---l~-----~~-~~~~~ 336 (954)
.|+|+... ..-+||+++. ++.... |. +. ...++
T Consensus 113 -----------------------------pdlLATs~--------D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTS 155 (364)
T KOG0290|consen 113 -----------------------------PDLLATSS--------DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTS 155 (364)
T ss_pred -----------------------------cchhhccc--------CeEEEEeccCcCCceehhhhhccCcccccCCcccc
Confidence 12222222 1235777765 332221 11 11 56688
Q ss_pred cccCC-CCcEEEEEeecCCcccccccCCCCcceEEEeccCce----EEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 337 LDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 337 ~~~Sp-DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~----~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
+.|.. |-++|..++.+ .+-.|||++.+. .++|..+. ..+..++|+.+|.
T Consensus 156 FDWne~dp~~igtSSiD-------------TTCTiWdie~~~~~~vkTQLIAHD-------------KEV~DIaf~~~s~ 209 (364)
T KOG0290|consen 156 FDWNEVDPNLIGTSSID-------------TTCTIWDIETGVSGTVKTQLIAHD-------------KEVYDIAFLKGSR 209 (364)
T ss_pred cccccCCcceeEeeccc-------------CeEEEEEEeeccccceeeEEEecC-------------cceeEEEeccCcc
Confidence 88986 55666666633 267789998652 23333332 4557889998666
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEeecc---cccCceeeccCC-ceEEEEEeccccceEEEEE
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLD---LRYGGISWCDDS-LALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~---~~~~~~~~spDg-~~l~~~~~~~~~~~~l~~~ 486 (954)
.+... ++..+.+.++|+ ..-+. +.+-... ...-.++|++.. ++++....+. .++.++
T Consensus 210 ~~FAS------------vgaDGSvRmFDL---R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS---~~V~iL 271 (364)
T KOG0290|consen 210 DVFAS------------VGADGSVRMFDL---RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS---NKVVIL 271 (364)
T ss_pred ceEEE------------ecCCCcEEEEEe---cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCC---ceEEEE
Confidence 54433 234556777775 22222 2222221 223456777654 4444333222 457777
Q ss_pred cCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 487 SPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 487 d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
|+.-+ ..+......+...+.+ ++|.|-.+.-+...
T Consensus 272 DiR~P-~tpva~L~~H~a~VNg------IaWaPhS~~hicta 306 (364)
T KOG0290|consen 272 DIRVP-CTPVARLRNHQASVNG------IAWAPHSSSHICTA 306 (364)
T ss_pred EecCC-CcceehhhcCcccccc------eEecCCCCceeeec
Confidence 77654 3444444555555555 88999876555443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.042 Score=55.44 Aligned_cols=197 Identities=14% Similarity=0.129 Sum_probs=110.1
Q ss_pred cccceeecCCCCeEEEEEeecc-ccCCCCceEEEEEECCCCc-----eeecccCCCccccccccceeEecCCeEEEEEec
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDA-EDSSSSKLRVWVADVDTGK-----ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~-~~~~~~~~~l~~~d~~~g~-----~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (954)
.+...+=||-.++|+-+..... ....-....||.+.-+-+. ...+...+...+ +.+.-+.|-|+++.++..
T Consensus 65 Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav-g~i~cvew~Pns~klasm-- 141 (370)
T KOG1007|consen 65 EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAV-GKINCVEWEPNSDKLASM-- 141 (370)
T ss_pred ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHh-CceeeEEEcCCCCeeEEe--
Confidence 4566666786666665543320 1111234567777644333 222222232111 014467899999999876
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-c-eeEcCCC------ccc
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-T-VKEIGPP------AVY 334 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~-~~~l~~~------~~~ 334 (954)
...+|.++++ .+ + ...+... ...
T Consensus 142 ------------------------------------------------~dn~i~l~~l~ess~~vaev~ss~s~e~~~~f 173 (370)
T KOG1007|consen 142 ------------------------------------------------DDNNIVLWSLDESSKIVAEVLSSESAEMRHSF 173 (370)
T ss_pred ------------------------------------------------ccCceEEEEcccCcchheeeccccccccccee
Confidence 1123555555 33 2 2222211 345
Q ss_pred cccccCC--CCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 335 TSLDPSP--DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 335 ~~~~~Sp--DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
++-+||| ||..++.++.. +++-||+.+-. .-.|.. .+...++++.|.|+-+
T Consensus 174 tsg~WspHHdgnqv~tt~d~--------------tl~~~D~RT~~~~~sI~d------------AHgq~vrdlDfNpnkq 227 (370)
T KOG1007|consen 174 TSGAWSPHHDGNQVATTSDS--------------TLQFWDLRTMKKNNSIED------------AHGQRVRDLDFNPNKQ 227 (370)
T ss_pred cccccCCCCccceEEEeCCC--------------cEEEEEccchhhhcchhh------------hhcceeeeccCCCCce
Confidence 6788999 99999988732 78899987422 111111 1223467888999888
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCC-CCceEEeecccccCceeeccCCceEEEEEecc
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG-EGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g-~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
.++.. - +..+-|.+||. ... .....+..+..-+..+.|.|--..|+.+...+
T Consensus 228 ~~lvt--~----------gDdgyvriWD~--R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 228 HILVT--C----------GDDGYVRIWDT--RKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred EEEEE--c----------CCCccEEEEec--cCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 66554 1 23446777774 222 23345556666677788888877777765444
|
|
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.05 Score=58.61 Aligned_cols=206 Identities=20% Similarity=0.200 Sum_probs=119.6
Q ss_pred CeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCC----
Q 002194 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII---- 724 (954)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~---- 724 (954)
|.+-...||+|..- +.+.=+||++||.... -.+.+......+.|.+.|+..+.....+..
T Consensus 70 ~~~~flaL~~~~~~----~~~~G~vIilp~~g~~------------~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~ 133 (310)
T PF12048_consen 70 GEERFLALWRPANS----AKPQGAVIILPDWGEH------------PDWPGLIAPLRRELPDHGWATLSITLPDPAPPAS 133 (310)
T ss_pred CCEEEEEEEecccC----CCCceEEEEecCCCCC------------CCcHhHHHHHHHHhhhcCceEEEecCCCcccccC
Confidence 33444557777642 2235689999984211 112222234566788999999982221100
Q ss_pred -----------CCCCc--c---------------cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHH
Q 002194 725 -----------GEGDE--E---------------ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (954)
Q Consensus 725 -----------G~G~~--~---------------~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~ 776 (954)
.-+.. . ....+....+.=+.+++.++.+++. .+|+|+||+.|+++++.+
T Consensus 134 p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G~gA~~~~~~ 210 (310)
T PF12048_consen 134 PNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGG---KNIVLIGHGTGAGWAARY 210 (310)
T ss_pred CccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeChhHHHHHHH
Confidence 00000 0 0112233455666777777777753 359999999999999999
Q ss_pred HHhCCC-cccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHH
Q 002194 777 LAHAPH-LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (954)
Q Consensus 777 a~~~p~-~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (954)
+...+. .+.++|.+++-.... . ........+.+++.|+|=|++.. .... ...+.+-.
T Consensus 211 la~~~~~~~daLV~I~a~~p~~---------~----------~n~~l~~~la~l~iPvLDi~~~~-~~~~--~~~a~~R~ 268 (310)
T PF12048_consen 211 LAEKPPPMPDALVLINAYWPQP---------D----------RNPALAEQLAQLKIPVLDIYSAD-NPAS--QQTAKQRK 268 (310)
T ss_pred HhcCCCcccCeEEEEeCCCCcc---------h----------hhhhHHHHhhccCCCEEEEecCC-ChHH--HHHHHHHH
Confidence 988753 478999998732100 0 01122234567889999999887 3321 23333222
Q ss_pred HHHHhCC-CcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 856 NALKGHG-ALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 856 ~~l~~~g-~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
...+... ..++-+.+++..|..... ...+.++|..||+++
T Consensus 269 ~~a~r~~~~~YrQ~~L~~~~~~~~~~--~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 269 QAAKRNKKPDYRQIQLPGLPDNPSGW--QEQLLRRIRGWLKRH 309 (310)
T ss_pred HHHHhccCCCceeEecCCCCCChhhH--HHHHHHHHHHHHHhh
Confidence 3333332 456777777777765322 223888999999875
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.15 Score=51.69 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=94.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCe---EEEEEecCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST---LLVCTIPLLR 266 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~---~l~~~~~~~~ 266 (954)
.+....|-|=..-+..++ +-...|-++|+.+-+....+..++. +.+-+|||=.. +|+...
T Consensus 103 ~iss~~WyP~DtGmFtss--------SFDhtlKVWDtnTlQ~a~~F~me~~-----VYshamSp~a~sHcLiA~gt---- 165 (397)
T KOG4283|consen 103 AISSAIWYPIDTGMFTSS--------SFDHTLKVWDTNTLQEAVDFKMEGK-----VYSHAMSPMAMSHCLIAAGT---- 165 (397)
T ss_pred eeeeeEEeeecCceeecc--------cccceEEEeecccceeeEEeecCce-----eehhhcChhhhcceEEEEec----
Confidence 567778888544444332 2345677778777665555444443 55667887542 333220
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcC-CC-ccccccccCCCC
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG-PP-AVYTSLDPSPDE 343 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~-~~-~~~~~~~~SpDG 343 (954)
...++-+-|+ +|.-.... .. +.+..+.|||-.
T Consensus 166 ---------------------------------------------r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 166 ---------------------------------------------RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred ---------------------------------------------CCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 2245677888 88654443 33 888999999999
Q ss_pred cEEEEEeecCCcccccccCCCCcceEEEecc--CceEEEeccCCCcccCCc--cccccccCccceeeccCCCCceEE
Q 002194 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPI--AFNSVRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 344 k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~~~~l~~~~~~~~~p~--~~~~~~~g~~~~~wspDg~~i~~~ 416 (954)
.||+++... ++.+.+||+. .+-.+.+..+... ..|+ +...+.+.+.+++|+.||..++..
T Consensus 201 e~vLatgsa------------Dg~irlWDiRrasgcf~~lD~hn~k-~~p~~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 201 EWVLATGSA------------DGAIRLWDIRRASGCFRVLDQHNTK-RPPILKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred eeEEEecCC------------CceEEEEEeecccceeEEeecccCc-cCccccccccccceeeeeeecccchhhhhc
Confidence 999998743 3489999987 3455555544321 1222 223445566789999999876654
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0044 Score=73.51 Aligned_cols=169 Identities=10% Similarity=0.098 Sum_probs=91.7
Q ss_pred ccccccccCCCCc-EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPDEK-YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk-~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
+.+..+.|++.+. .||-.. . .++|+|||++.-+ .+.+.. .. .....+..++|...-
T Consensus 117 G~V~gLDfN~~q~nlLASGa-~------------~geI~iWDlnn~~-tP~~~~----~~-----~~~~eI~~lsWNrkv 173 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGA-D------------DGEILIWDLNKPE-TPFTPG----SQ-----APPSEIKCLSWNRKV 173 (1049)
T ss_pred CceeeeeccccCCceeeccC-C------------CCcEEEeccCCcC-CCCCCC----CC-----CCcccceEeccchhh
Confidence 7788899999987 444443 2 2389999998411 111110 00 011233456665544
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec--ccccCceeeccCCce-EEEEEeccccceEEEEEc
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRYGGISWCDDSLA-LVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--~~~~~~~~~spDg~~-l~~~~~~~~~~~~l~~~d 487 (954)
+.|+.. .+..+...+||+ .....+..+... ...+..+.|.||+.. |+.+++++. ...|-..|
T Consensus 174 qhILAS------------~s~sg~~~iWDl--r~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~-~PviqlWD 238 (1049)
T KOG0307|consen 174 SHILAS------------GSPSGRAVIWDL--RKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDS-APVIQLWD 238 (1049)
T ss_pred hHHhhc------------cCCCCCceeccc--cCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCC-CceeEeec
Confidence 443332 133456777886 222233344333 345678999999765 444444443 23344444
Q ss_pred CCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeE
Q 002194 488 PGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (954)
Q Consensus 488 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 565 (954)
+.-. ..|..+...+...+.+ +.|.+.+..++.... ...+++.|+.++|+.-
T Consensus 239 lR~a-ssP~k~~~~H~~Gils------lsWc~~D~~lllSsg--------------------kD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 239 LRFA-SSPLKILEGHQRGILS------LSWCPQDPRLLLSSG--------------------KDNRIICWNPNTGEVL 289 (1049)
T ss_pred cccc-CCchhhhcccccceee------eccCCCCchhhhccc--------------------CCCCeeEecCCCceEe
Confidence 3322 1344444444444444 789988865555541 2335999999998753
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.11 Score=52.96 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=26.8
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeec
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL 234 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 234 (954)
=...+||||+..|||+.. ...|.++|+.|.+...+
T Consensus 46 WRkl~WSpD~tlLa~a~S---------~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAES---------TGTIRVFDLMGSELFVI 80 (282)
T ss_pred heEEEECCCCcEEEEEcC---------CCeEEEEecccceeEEc
Confidence 355789999999999763 56778889888666544
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.015 Score=60.71 Aligned_cols=65 Identities=12% Similarity=0.014 Sum_probs=57.3
Q ss_pred CCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 828 ~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
...+|.|++.++.|.+++ .++.+++.+..++.|.+++...|++.+|.-....+.+++.+.+.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~--~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIP--WRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcC--HHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 346899999999999999 99999999999999999999999999998777777888888777763
|
|
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.011 Score=60.59 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhCC---CcccEEEEeccC
Q 002194 740 VACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGA 793 (954)
Q Consensus 740 ~~D~~~av~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~ 793 (954)
.+-+..+++++.+.. ...+++|.++||||||.+|-.++...+ +.++.+|.++.+
T Consensus 63 ~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tP 122 (225)
T PF07819_consen 63 AEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTP 122 (225)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCC
Confidence 344455566665543 456789999999999999888876543 468888887654
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.031 Score=63.01 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=37.9
Q ss_pred eEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCce
Q 002194 553 FLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (954)
Q Consensus 553 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~ 621 (954)
.|.+||+.+|+.++.+...-. .+. .++ ....+|.|-+++.+++..+ |.++|..+|+.
T Consensus 619 nirif~i~sgKq~k~FKgs~~--~eG--~lI----Kv~lDPSgiY~atScsdkt----l~~~Df~sgEc 675 (1080)
T KOG1408|consen 619 NIRIFDIESGKQVKSFKGSRD--HEG--DLI----KVILDPSGIYLATSCSDKT----LCFVDFVSGEC 675 (1080)
T ss_pred ceEEEeccccceeeeeccccc--CCC--ceE----EEEECCCccEEEEeecCCc----eEEEEeccchh
Confidence 499999999999988876632 011 111 2456788888887777544 77777766653
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.016 Score=60.26 Aligned_cols=135 Identities=10% Similarity=0.061 Sum_probs=84.3
Q ss_pred ceEEEEEe-CC-ceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCC
Q 002194 314 TQLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (954)
Q Consensus 314 ~~l~~~~~-~G-~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p 391 (954)
..|+++|+ .+ .++.+...-....++|+|.+ ..|+...+ +.++|.+|...-. +++..+.
T Consensus 210 rsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea--fnF~~a~E-----------D~nlY~~DmR~l~-~p~~v~~------ 269 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVILTMRTNTICWNPEA--FNFVAANE-----------DHNLYTYDMRNLS-RPLNVHK------ 269 (433)
T ss_pred CceEEEecccCCccceeeeeccccceecCccc--cceeeccc-----------cccceehhhhhhc-ccchhhc------
Confidence 45889998 55 34444444445678999933 44544332 2378888765211 1111111
Q ss_pred ccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE--eecccccCceeeccCCce
Q 002194 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLA 469 (954)
Q Consensus 392 ~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~ 469 (954)
+.-..+-++.|||-|+.++-. +-...|.++.+ ..+..+.+ +.--..+..+.||-|.++
T Consensus 270 ----dhvsAV~dVdfsptG~Efvsg-------------syDksIRIf~~---~~~~SRdiYhtkRMq~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 270 ----DHVSAVMDVDFSPTGQEFVSG-------------SYDKSIRIFPV---NHGHSRDIYHTKRMQHVFCVKYSMDSKY 329 (433)
T ss_pred ----ccceeEEEeccCCCcchhccc-------------cccceEEEeec---CCCcchhhhhHhhhheeeEEEEeccccE
Confidence 112345678999999987654 33446677765 44555544 444456788999999999
Q ss_pred EEEEEeccccceEEEEEcCCC
Q 002194 470 LVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~ 490 (954)
|+..+++.+ .+||......
T Consensus 330 i~SGSdd~n--vRlWka~Ase 348 (433)
T KOG0268|consen 330 IISGSDDGN--VRLWKAKASE 348 (433)
T ss_pred EEecCCCcc--eeeeecchhh
Confidence 998877665 8999987665
|
|
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.012 Score=54.74 Aligned_cols=139 Identities=13% Similarity=0.126 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCcccc-----ch
Q 002194 735 FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED-----RT 809 (954)
Q Consensus 735 ~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~-----~~ 809 (954)
+..+..+.+..+|..+ .|+ .++|+|-|.||+.|.+++.+. . +++++ ++|..-......++..+. +.
T Consensus 41 ~p~~a~~ele~~i~~~-----~~~-~p~ivGssLGGY~At~l~~~~-G-irav~-~NPav~P~e~l~gylg~~en~ytg~ 111 (191)
T COG3150 41 DPQQALKELEKAVQEL-----GDE-SPLIVGSSLGGYYATWLGFLC-G-IRAVV-FNPAVRPYELLTGYLGRPENPYTGQ 111 (191)
T ss_pred CHHHHHHHHHHHHHHc-----CCC-CceEEeecchHHHHHHHHHHh-C-Chhhh-cCCCcCchhhhhhhcCCCCCCCCcc
Confidence 3455566655655443 222 389999999999999999887 2 55443 344322111000111100 00
Q ss_pred hhh-cHHHHHhcCcccccCCCCCC--EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHH
Q 002194 810 LWE-ATSTYVEMSPFMSANKLKKP--ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886 (954)
Q Consensus 810 ~~~-~~~~~~~~sp~~~~~~~~~P--~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~ 886 (954)
.|. ........ -...+..++.| +.++.-+.|++.. ..++.+.+.... ..+.+|.+|.|.. ..+.
T Consensus 112 ~y~le~~hI~~l-~~~~~~~l~~p~~~~lL~qtgDEvLD--yr~a~a~y~~~~-------~~V~dgg~H~F~~---f~~~ 178 (191)
T COG3150 112 EYVLESRHIATL-CVLQFRELNRPRCLVLLSQTGDEVLD--YRQAVAYYHPCY-------EIVWDGGDHKFKG---FSRH 178 (191)
T ss_pred eEEeehhhHHHH-HHhhccccCCCcEEEeecccccHHHH--HHHHHHHhhhhh-------heeecCCCccccc---hHHh
Confidence 110 00001110 11233444554 4444555588866 666666666543 4467888999854 3466
Q ss_pred HHHHHHHHH
Q 002194 887 LWETDRWLQ 895 (954)
Q Consensus 887 ~~~i~~fl~ 895 (954)
++.|..|..
T Consensus 179 l~~i~aF~g 187 (191)
T COG3150 179 LQRIKAFKG 187 (191)
T ss_pred HHHHHHHhc
Confidence 778888753
|
|
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0045 Score=70.63 Aligned_cols=150 Identities=12% Similarity=0.098 Sum_probs=87.6
Q ss_pred EEEEEc-CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcc---cHHHHHHHHCCcEEE
Q 002194 641 LIKYQR-KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIG---STSVLLWLARGFAIL 716 (954)
Q Consensus 641 ~~~~~~-~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la~~G~~V~ 716 (954)
.+.+.. ..+..+..|++...+ ++. ..|+|||++|||.++.-......-+|.....-+ ......|...+..|+
T Consensus 51 y~~v~~~~~~~~lFyw~~~s~~-~~~---~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~~~l~ 126 (462)
T PTZ00472 51 YFDIPGNQTDKHYFYWAFGPRN-GNP---EAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEAYVIY 126 (462)
T ss_pred EEEeCCCCCCceEEEEEEEcCC-CCC---CCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccccCeEE
Confidence 344432 235678888886543 222 379999999999877554444444443332211 011224556666555
Q ss_pred EcCCCCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhC----C------Cc
Q 002194 717 GGPTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHA----P------HL 783 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~----p------~~ 783 (954)
.-...| .|++..... ........+|+.++++...++ +.....++.|+|+||||..+..++.+- . =.
T Consensus 127 iDqP~G-~G~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~in 205 (462)
T PTZ00472 127 VDQPAG-VGFSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYIN 205 (462)
T ss_pred EeCCCC-cCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceee
Confidence 521211 233322111 122356678888888766543 444557899999999999887777542 0 13
Q ss_pred ccEEEEeccCCC
Q 002194 784 FCCGIARSGAYN 795 (954)
Q Consensus 784 ~~a~v~~~~~~~ 795 (954)
++++++..|..+
T Consensus 206 LkGi~IGNg~~d 217 (462)
T PTZ00472 206 LAGLAVGNGLTD 217 (462)
T ss_pred eEEEEEeccccC
Confidence 788888888765
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.29 Score=57.15 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=65.3
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccC-CCCCCceeeeecCCCCC
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP-DGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-~g~~~~~~~lt~~~~~~ 189 (954)
..-.++||.|+.+|..-.+ +.|.+|.--. ++.....+.+.- +..
T Consensus 208 ~t~~~~spn~~~~Aa~d~d---------------------------------GrI~vw~d~~~~~~~~t~t~lHW--H~~ 252 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSD---------------------------------GRILVWRDFGSSDDSETCTLLHW--HHD 252 (792)
T ss_pred ceeEEeccccceEEEeccC---------------------------------CcEEEEeccccccccccceEEEe--ccc
Confidence 4457889999888876554 4567775322 111123344433 223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
.+...+||+||..|+- +.-...|-++.+++++ +++.+. +.+.+..+.|||||......
T Consensus 253 ~V~~L~fS~~G~~LlS---------GG~E~VLv~Wq~~T~~-kqfLPR----Lgs~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLS---------GGREGVLVLWQLETGK-KQFLPR----LGSPILHIVVSPDSDLYSLV 310 (792)
T ss_pred ccceeEEecCCceEee---------cccceEEEEEeecCCC-cccccc----cCCeeEEEEEcCCCCeEEEE
Confidence 6888999999998887 2235566777777877 444322 23337799999999877765
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0093 Score=66.95 Aligned_cols=109 Identities=16% Similarity=0.147 Sum_probs=65.9
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
+..++.||+|+.||..-.. ..-.. ..|++|+... - .+...|.. +.-.
T Consensus 528 v~~l~~s~~gnliASaCKS----------------------~~~eh------AvI~lw~t~~-W--~~~~~L~~--HsLT 574 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKS----------------------SLKEH------AVIRLWNTAN-W--LQVQELEG--HSLT 574 (764)
T ss_pred EEEEEecCCCCEEeehhhh----------------------CCccc------eEEEEEeccc-h--hhhheecc--cceE
Confidence 6678999999999997653 11111 3689998732 1 12223322 2236
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
+....|||||++|+-+++ +-...||-.--+-........ ......++-++.|+||++.++.+
T Consensus 575 VT~l~FSpdg~~LLsvsR-------DRt~sl~~~~~~~~~e~~fa~--~k~HtRIIWdcsW~pde~~FaTa 636 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSR-------DRTVSLYEVQEDIKDEFRFAC--LKAHTRIIWDCSWSPDEKYFATA 636 (764)
T ss_pred EEEEEECCCCcEEEEeec-------CceEEeeeeecccchhhhhcc--ccccceEEEEcccCcccceeEEe
Confidence 899999999999999874 336666655211111111111 11223346689999999987655
|
|
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0052 Score=70.40 Aligned_cols=88 Identities=24% Similarity=0.165 Sum_probs=59.4
Q ss_pred HHHHHH-CCcEEEEcCCCCCCCCCCcccc-------hhh--HHHHHHHHHHHHHHHHHcC-CCCCCcEEEEeeChHHHHH
Q 002194 705 VLLWLA-RGFAILGGPTTPIIGEGDEEAN-------DRF--VEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAFMT 773 (954)
Q Consensus 705 ~~~la~-~G~~V~~~~~~~~~G~G~~~~~-------~~~--~~~~~~D~~~av~~l~~~~-~~d~~ri~l~G~S~GG~~a 773 (954)
...||. .|-.|+. ...+=||.+..- -.+ ..+.+.|+...++++..+. ..+..+++++|.||||.+|
T Consensus 51 ~~~lA~~~~a~~v~---lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~La 127 (434)
T PF05577_consen 51 MWELAKEFGALVVA---LEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALA 127 (434)
T ss_dssp HHHHHHHHTEEEEE---E--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHH
T ss_pred HHHHHHHcCCcEEE---eehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHH
Confidence 344554 5666666 333446666431 111 5688999999999998663 3455699999999999999
Q ss_pred HHHHHhCCCcccEEEEeccCCC
Q 002194 774 ANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 774 ~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
+|+-.++|+.|.|+++.+++..
T Consensus 128 aw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 128 AWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHHHHH-TTT-SEEEEET--CC
T ss_pred HHHHhhCCCeeEEEEeccceee
Confidence 9999999999999999887654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.054 Score=57.02 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=40.4
Q ss_pred ceEEEEEe-CCc-eeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE
Q 002194 314 TQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (954)
Q Consensus 314 ~~l~~~~~-~G~-~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~ 378 (954)
..+.++++ +|+ ...+..+..+.+++|+-||..++.+..+. .|.|||...+++
T Consensus 154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDK-------------kvRv~dpr~~~~ 207 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDK-------------KVRVIDPRRGTV 207 (472)
T ss_pred ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccc-------------eeEEEcCCCCcE
Confidence 45677788 774 55566558899999999999999988543 899999986654
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.25 Score=50.23 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=67.8
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
..+..-.|||||++|+.+.++-. .-.+-|-+||.+.+ ..++-..+. .--|.-.+.|.+||+
T Consensus 114 HfyGHGvfs~dG~~LYATEndfd--------~~rGViGvYd~r~~-fqrvgE~~t----------~GiGpHev~lm~DGr 174 (366)
T COG3490 114 HFYGHGVFSPDGRLLYATENDFD--------PNRGVIGVYDAREG-FQRVGEFST----------HGIGPHEVTLMADGR 174 (366)
T ss_pred eeecccccCCCCcEEEeecCCCC--------CCCceEEEEecccc-cceeccccc----------CCcCcceeEEecCCc
Confidence 45567789999999988775532 12346889988733 222222221 113456789999999
Q ss_pred CceEEE---Eec-cCCCccccccC-CCeEEEEecCCCCCCCceEEee----cccccCceeeccCCceEEEEEeccc
Q 002194 412 STLYWA---ETQ-DGGDAKVEVTP-RDIIYTQQAEPVQGEGPEILHK----LDLRYGGISWCDDSLALVYESWYKT 478 (954)
Q Consensus 412 ~i~~~~---~~~-~~~~~~~~~~~-~~~l~~~~~~~~~g~~~~~l~~----~~~~~~~~~~spDg~~l~~~~~~~~ 478 (954)
.++... +.. +-+..+...+. .-.+.+++. .+|.-..+.+- ....+..+...+||+ |+|.....+
T Consensus 175 tlvvanGGIethpdfgR~~lNldsMePSlvlld~--atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G 247 (366)
T COG3490 175 TLVVANGGIETHPDFGRTELNLDSMEPSLVLLDA--ATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRG 247 (366)
T ss_pred EEEEeCCceecccccCccccchhhcCccEEEEec--cccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeC
Confidence 888761 111 11111111111 124566663 35543333321 123455677788886 555554433
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.04 Score=59.50 Aligned_cols=136 Identities=10% Similarity=0.087 Sum_probs=86.3
Q ss_pred ceEEEEEe-CC-ceeEcCCC--ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCccc
Q 002194 314 TQLVLVSL-DG-TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAED 389 (954)
Q Consensus 314 ~~l~~~~~-~G-~~~~l~~~--~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~ 389 (954)
+.|.+..+ ++ ..+.++.+ ..++.+.+||-.|+++....+. +.+.+||+.|....- ...
T Consensus 143 Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~------------G~VtlwDv~g~sp~~--~~~---- 204 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDK------------GAVTLWDVQGMSPIF--HAS---- 204 (673)
T ss_pred CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccC------------CeEEEEeccCCCccc--chh----
Confidence 34666666 55 34445544 4456788999999888776443 389999999754221 100
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCce
Q 002194 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (954)
Q Consensus 390 ~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~ 469 (954)
..+..-.+.+.|||-...|+..+ +-..+|++||. .......-...+.....++|+++|.+
T Consensus 205 -----~~HsAP~~gicfspsne~l~vsV------------G~Dkki~~yD~---~s~~s~~~l~y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 205 -----EAHSAPCRGICFSPSNEALLVSV------------GYDKKINIYDI---RSQASTDRLTYSHPLSTVAFSECGTY 264 (673)
T ss_pred -----hhccCCcCcceecCCccceEEEe------------cccceEEEeec---ccccccceeeecCCcceeeecCCceE
Confidence 01112336789999888776652 33458999985 22222111233455678999999999
Q ss_pred EEEEEeccccceEEEEEcCCCC
Q 002194 470 LVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
|+.... +.+|+.+|+.+.
T Consensus 265 L~aG~s----~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 265 LCAGNS----KGELIAYDMRST 282 (673)
T ss_pred EEeecC----CceEEEEecccC
Confidence 987642 357999998875
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.029 Score=58.63 Aligned_cols=127 Identities=12% Similarity=0.150 Sum_probs=81.7
Q ss_pred EcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccce
Q 002194 327 EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSI 404 (954)
Q Consensus 327 ~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~ 404 (954)
.++.. ..+.+++|||..+-++++... ++.|.|||+..+.. ..+... .....++-+
T Consensus 252 Pf~gH~~SVEDLqWSptE~~vfaScS~------------DgsIrIWDiRs~~~~~~~~~k-----------Ah~sDVNVI 308 (440)
T KOG0302|consen 252 PFTGHTKSVEDLQWSPTEDGVFASCSC------------DGSIRIWDIRSGPKKAAVSTK-----------AHNSDVNVI 308 (440)
T ss_pred cccccccchhhhccCCccCceEEeeec------------CceEEEEEecCCCccceeEee-----------ccCCceeeE
Confidence 34444 778899999998888777644 34899999985522 222221 122345678
Q ss_pred eeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCce-EEeecccccCceeeccCCceEEEEEeccccceEE
Q 002194 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (954)
Q Consensus 405 ~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~-~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (954)
+|+-+-..|+.- +..+.+.+||+.-+..+++. .+.-+...+.++.|+|....++.++..++ +..|
T Consensus 309 SWnr~~~lLasG-------------~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~-Qiti 374 (440)
T KOG0302|consen 309 SWNRREPLLASG-------------GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN-QITI 374 (440)
T ss_pred EccCCcceeeec-------------CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC-cEEE
Confidence 898766633332 33557777886444555443 44566778899999998777666655554 3778
Q ss_pred EEEcCCC
Q 002194 484 WVISPGS 490 (954)
Q Consensus 484 ~~~d~~~ 490 (954)
|.+.++.
T Consensus 375 WDlsvE~ 381 (440)
T KOG0302|consen 375 WDLSVEA 381 (440)
T ss_pred EEeeccC
Confidence 8777655
|
|
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0044 Score=69.62 Aligned_cols=87 Identities=14% Similarity=0.231 Sum_probs=62.5
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 782 (954)
.....|++.||.+ . .+..|.|..+.........++++.+.++.+.+.. ...++.|+||||||.++..++..+|+
T Consensus 112 ~li~~L~~~GY~~-~---~dL~g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~fl~~~p~ 185 (440)
T PLN02733 112 DMIEQLIKWGYKE-G---KTLFGFGYDFRQSNRLPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKCFMSLHSD 185 (440)
T ss_pred HHHHHHHHcCCcc-C---CCcccCCCCccccccHHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHHHHHHCCH
Confidence 4567788999976 3 3455666555443334555677778888776653 23589999999999999999988775
Q ss_pred ----cccEEEEeccCCC
Q 002194 783 ----LFCCGIARSGAYN 795 (954)
Q Consensus 783 ----~~~a~v~~~~~~~ 795 (954)
.++..|++++.+.
T Consensus 186 ~~~k~I~~~I~la~P~~ 202 (440)
T PLN02733 186 VFEKYVNSWIAIAAPFQ 202 (440)
T ss_pred hHHhHhccEEEECCCCC
Confidence 3688888887655
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.038 Score=55.83 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=95.2
Q ss_pred CCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCC-eEEEEEeeccccCCCCceEEEEEECCCCc
Q 002194 152 KCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGK-HLAFSIRIDAEDSSSSKLRVWVADVDTGK 230 (954)
Q Consensus 152 ~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~-~iaf~~~~~~~~~~~~~~~l~~~d~~~g~ 230 (954)
++......+|+..|.+||.++ .+..-. ++-.+.+..-+|||=.. +-+... +....+|-+.|+.+|.
T Consensus 113 DtGmFtssSFDhtlKVWDtnT----lQ~a~~--F~me~~VYshamSp~a~sHcLiA~-------gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNT----LQEAVD--FKMEGKVYSHAMSPMAMSHCLIAA-------GTRDVQVRLCDIASGS 179 (397)
T ss_pred cCceeecccccceEEEeeccc----ceeeEE--eecCceeehhhcChhhhcceEEEE-------ecCCCcEEEEeccCCc
Confidence 444455566778899999865 332222 32234677778999443 333332 2236788889999988
Q ss_pred eeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccc
Q 002194 231 ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDY 310 (954)
Q Consensus 231 ~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~ 310 (954)
......+...+ +-.+.|||...++.++.. .++... .+++
T Consensus 180 ~sH~LsGHr~~----vlaV~Wsp~~e~vLatgs--------------------aDg~ir-----------------lWDi 218 (397)
T KOG4283|consen 180 FSHTLSGHRDG----VLAVEWSPSSEWVLATGS--------------------ADGAIR-----------------LWDI 218 (397)
T ss_pred ceeeeccccCc----eEEEEeccCceeEEEecC--------------------CCceEE-----------------EEEe
Confidence 76665554433 668999999999988721 110000 0000
Q ss_pred c-ccceEEEEEe-CCceeEcC--CC---ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce
Q 002194 311 Y-ATTQLVLVSL-DGTVKEIG--PP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF 377 (954)
Q Consensus 311 ~-~~~~l~~~~~-~G~~~~l~--~~---~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~ 377 (954)
. ..+.+..+|. .++.-++. +. +.+.+.+|+.||++++....++ .+.+|+...++
T Consensus 219 Rrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~-------------r~r~wn~~~G~ 279 (397)
T KOG4283|consen 219 RRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD-------------RIRVWNMESGR 279 (397)
T ss_pred ecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc-------------ceEEeecccCc
Confidence 0 1233445666 44322221 11 6678899999999998876433 77888877443
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.41 Score=55.93 Aligned_cols=200 Identities=10% Similarity=0.090 Sum_probs=112.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+-..+|.|.--||+..- .+|.-+||-+...+ ...-+...+ +.+..+.|.|++-+++...+
T Consensus 11 RvKglsFHP~rPwILtsl-------HsG~IQlWDYRM~t--li~rFdeHd----GpVRgv~FH~~qplFVSGGD------ 71 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSL-------HSGVIQLWDYRMGT--LIDRFDEHD----GPVRGVDFHPTQPLFVSGGD------ 71 (1202)
T ss_pred cccceecCCCCCEEEEee-------cCceeeeehhhhhh--HHhhhhccC----CccceeeecCCCCeEEecCC------
Confidence 566689999888998754 45677888665432 222222222 23788999999986664300
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-ccccccccCCCCcEEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILI 348 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-~~~~~~~~SpDGk~l~~ 348 (954)
| ..-.+|.+....-.-.|... ..++...|.+.=-||+.
T Consensus 72 ----------------------------------D-------ykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlS 110 (1202)
T KOG0292|consen 72 ----------------------------------D-------YKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILS 110 (1202)
T ss_pred ----------------------------------c-------cEEEEEecccceehhhhccccceeEEeeccCCCceEEE
Confidence 0 11123333222222333444 77888999999999998
Q ss_pred EeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
.|++ ++|.||+-..+ .+..++.+... +--..|.|....|+-.
T Consensus 111 ASDD-------------QTIrIWNwqsr~~iavltGHnHY-------------VMcAqFhptEDlIVSa----------- 153 (1202)
T KOG0292|consen 111 ASDD-------------QTIRIWNWQSRKCIAVLTGHNHY-------------VMCAQFHPTEDLIVSA----------- 153 (1202)
T ss_pred ccCC-------------CeEEEEeccCCceEEEEecCceE-------------EEeeccCCccceEEEe-----------
Confidence 8844 48999998754 44555554322 2223466644433332
Q ss_pred cccCCCeEEEEecCCC-----------------------CC--C-Cc-eEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 428 EVTPRDIIYTQQAEPV-----------------------QG--E-GP-EILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~-----------------------~g--~-~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
+-...|.+||+..+ -| . -. ..|.+++..++..+|.|---.|+..+++ ++
T Consensus 154 --SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DD--Rq 229 (1202)
T KOG0292|consen 154 --SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADD--RQ 229 (1202)
T ss_pred --cccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCc--ce
Confidence 22223444443000 00 0 01 2234566667778888876666655443 45
Q ss_pred eEEEEEcCCC
Q 002194 481 TRTWVISPGS 490 (954)
Q Consensus 481 ~~l~~~d~~~ 490 (954)
..||+++...
T Consensus 230 VKlWrmnetK 239 (1202)
T KOG0292|consen 230 VKLWRMNETK 239 (1202)
T ss_pred eeEEEecccc
Confidence 8899987543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.22 Score=53.71 Aligned_cols=229 Identities=13% Similarity=0.109 Sum_probs=126.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
++|-+|++...+.. ..+.....+++..++...|+|....-+|... ....|-..|++++....+......
T Consensus 210 G~VG~Wn~~~~~~d-~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS--------yDGtiR~~D~~~~i~e~v~s~~~d-- 278 (498)
T KOG4328|consen 210 GQVGLWNFGTQEKD-KDGVYLFTPHSGPVSGLKFSPANTSQIYSSS--------YDGTIRLQDFEGNISEEVLSLDTD-- 278 (498)
T ss_pred CcEEEEecCCCCCc-cCceEEeccCCccccceEecCCChhheeeec--------cCceeeeeeecchhhHHHhhcCcc--
Confidence 57889999422211 1222233345558999999996654444332 356788889888766655544321
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
+..+.++.++.+...+++.. ..+.+-++|+
T Consensus 279 ~~~fs~~d~~~e~~~vl~~~-------------------------------------------------~~G~f~~iD~R 309 (498)
T KOG4328|consen 279 NIWFSSLDFSAESRSVLFGD-------------------------------------------------NVGNFNVIDLR 309 (498)
T ss_pred ceeeeeccccCCCccEEEee-------------------------------------------------cccceEEEEee
Confidence 11256777777776666651 0112334555
Q ss_pred -CCc-eeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC--ceEE-EeccCCCcccCCcccc
Q 002194 322 -DGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVR-ELCDLPLAEDIPIAFN 395 (954)
Q Consensus 322 -~G~-~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g--~~~~-~l~~~~~~~~~p~~~~ 395 (954)
+|. ...+... ..+.++++.|--.+++.++.. +....|||+.. ++.. .|...+
T Consensus 310 ~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~------------D~T~kIWD~R~l~~K~sp~lst~~---------- 367 (498)
T KOG4328|consen 310 TDGSEYENLRLHKKKITSVALNPVCPWFLATASL------------DQTAKIWDLRQLRGKASPFLSTLP---------- 367 (498)
T ss_pred cCCccchhhhhhhcccceeecCCCCchheeeccc------------CcceeeeehhhhcCCCCcceeccc----------
Confidence 442 3333333 578899999998887766533 23777999872 2221 122222
Q ss_pred ccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCC-CCCCceEEeeccc------ccCceeeccCCc
Q 002194 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV-QGEGPEILHKLDL------RYGGISWCDDSL 468 (954)
Q Consensus 396 ~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~g~~~~~l~~~~~------~~~~~~~spDg~ 468 (954)
++..+.+..|||+|-.|+-. ...+.|.+++..-. ..-++.....+.. ......|.||-.
T Consensus 368 -HrrsV~sAyFSPs~gtl~TT-------------~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~ 433 (498)
T KOG4328|consen 368 -HRRSVNSAYFSPSGGTLLTT-------------CQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN 433 (498)
T ss_pred -ccceeeeeEEcCCCCceEee-------------ccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCcc
Confidence 22345678899999885554 34556777763000 1111111111111 122368999877
Q ss_pred eEEEEEeccccceEEEEEcCCCC
Q 002194 469 ALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
.|+..... ..|=+++..++
T Consensus 434 li~vg~~~----r~IDv~~~~~~ 452 (498)
T KOG4328|consen 434 LIVVGRYP----RPIDVFDGNGG 452 (498)
T ss_pred EEEEeccC----cceeEEcCCCC
Confidence 66665332 23666666664
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.059 Score=54.39 Aligned_cols=185 Identities=17% Similarity=0.146 Sum_probs=101.0
Q ss_pred EEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch
Q 002194 654 ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND 733 (954)
Q Consensus 654 ~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~ 733 (954)
.|+..|+. .-.||.+-||.|.+.. |+-+ +..+.+.|+++||+|++-+|... +-+.
T Consensus 8 ~wvl~P~~--------P~gvihFiGGaf~ga~--------P~it---Yr~lLe~La~~Gy~ViAtPy~~t------fDH~ 62 (250)
T PF07082_consen 8 SWVLIPPR--------PKGVIHFIGGAFVGAA--------PQIT---YRYLLERLADRGYAVIATPYVVT------FDHQ 62 (250)
T ss_pred cEEEeCCC--------CCEEEEEcCcceeccC--------cHHH---HHHHHHHHHhCCcEEEEEecCCC------CcHH
Confidence 46667752 1247777787554322 1111 23456678899999999555211 1122
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCC--cEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC---CCCCC------
Q 002194 734 RFVEQLVACAEAAVEEVVRRGVAHPS--KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT---LTPFG------ 802 (954)
Q Consensus 734 ~~~~~~~~D~~~av~~l~~~~~~d~~--ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~---~~~~~------ 802 (954)
.........+..+++.|.++...++. +++-+|||+|+-+-+.+....+..-++-|.++ +-|.. ..++.
T Consensus 63 ~~A~~~~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliS-FNN~~a~~aIP~~~~l~~~ 141 (250)
T PF07082_consen 63 AIAREVWERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILIS-FNNFPADEAIPLLEQLAPA 141 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEe-cCChHHHhhCchHhhhccc
Confidence 22334455666777888776544433 68889999999999888776643334445554 21110 01110
Q ss_pred Cc-cccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC-CcEEEEEeCCCCCcC
Q 002194 803 FQ-NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHGY 877 (954)
Q Consensus 803 ~~-~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~~ 877 (954)
+. +....+-+......+.. . -...|+|-=.+|. .+++..+.+.|+... .-++....+| +|.-
T Consensus 142 l~~EF~PsP~ET~~li~~~Y------~-~~rnLLIkF~~D~-----iDqt~~L~~~L~~r~~~~~~~~~L~G-~HLT 205 (250)
T PF07082_consen 142 LRLEFTPSPEETRRLIRESY------Q-VRRNLLIKFNDDD-----IDQTDELEQILQQRFPDMVSIQTLPG-NHLT 205 (250)
T ss_pred cccCccCCHHHHHHHHHHhc------C-CccceEEEecCCC-----ccchHHHHHHHhhhccccceEEeCCC-CCCC
Confidence 00 00011112122111111 1 1335666666675 578888989888653 3366777886 8853
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.07 Score=54.67 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=49.5
Q ss_pred eceEEEEccCCCCCCceeeeecCC-CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFP-DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~-~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
+.|.+|++ +....+..+. +...+++.+..|-|+ ||.+.. + ...|-.+|+-.|..-.++.....
T Consensus 107 G~i~iw~~------~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg------~--D~~lr~WNLV~Gr~a~v~~L~~~- 170 (362)
T KOG0294|consen 107 GHIIIWRV------GSWELLKSLKAHKGQVTDLSIHPSGK-LALSVG------G--DQVLRTWNLVRGRVAFVLNLKNK- 170 (362)
T ss_pred CcEEEEEc------CCeEEeeeecccccccceeEecCCCc-eEEEEc------C--CceeeeehhhcCccceeeccCCc-
Confidence 57888887 3333333222 223699999999987 555432 2 44555667666655445444443
Q ss_pred ccccccceeEecCCeEEEEE
Q 002194 242 LNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~ 261 (954)
...+.|+|.|..+++.
T Consensus 171 ----at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 171 ----ATLVSWSPQGDHFVVS 186 (362)
T ss_pred ----ceeeEEcCCCCEEEEE
Confidence 3468999999988876
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.27 Score=51.32 Aligned_cols=233 Identities=15% Similarity=0.051 Sum_probs=123.8
Q ss_pred eeeeeecCCCCCCcceeeEeceEEEEccCCCCCCcee-eeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEE
Q 002194 144 LAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI-EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVW 222 (954)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~-~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~ 222 (954)
+..+.++|........+.+..|.|||+.+ ++.+ .|+++- ..+..+++|+---++.-+. +..+|-
T Consensus 154 Vr~vavdP~n~wf~tgs~DrtikIwDlat----g~LkltltGhi--~~vr~vavS~rHpYlFs~g---------edk~VK 218 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFATGSADRTIKIWDLAT----GQLKLTLTGHI--ETVRGVAVSKRHPYLFSAG---------EDKQVK 218 (460)
T ss_pred EEEEeeCCCceeEEecCCCceeEEEEccc----CeEEEeecchh--heeeeeeecccCceEEEec---------CCCeeE
Confidence 33344444443333334447899999965 4422 233322 3688889998666554432 467889
Q ss_pred EEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCc
Q 002194 223 VADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDE 302 (954)
Q Consensus 223 ~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~ 302 (954)
.+|++..+..+-..+.-.. +..+.-.|--++|+...
T Consensus 219 CwDLe~nkvIR~YhGHlS~----V~~L~lhPTldvl~t~g---------------------------------------- 254 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSG----VYCLDLHPTLDVLVTGG---------------------------------------- 254 (460)
T ss_pred EEechhhhhHHHhccccce----eEEEeccccceeEEecC----------------------------------------
Confidence 9999887765443332211 34555667777776541
Q ss_pred cccccccccccceEEEEEe-CC-ceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc-CceE
Q 002194 303 YDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFV 378 (954)
Q Consensus 303 ~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~-g~~~ 378 (954)
..+.+-++|+ +. .+..+... ..+.++.+-|-.-.|+..+.+ ..|.+||+. |+..
T Consensus 255 ---------rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D-------------~tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 255 ---------RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD-------------STVRLWDLRAGKTM 312 (460)
T ss_pred ---------CcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC-------------ceEEEeeeccCcee
Confidence 1122334454 33 34444433 555566666544455555533 389999998 5566
Q ss_pred EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeeccccc
Q 002194 379 RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRY 458 (954)
Q Consensus 379 ~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~ 458 (954)
..++.+. ..++.+...|+-...+- ...+.+-.|++ ..|.-...+..+...+
T Consensus 313 ~tlt~hk-------------ksvral~lhP~e~~fAS--------------as~dnik~w~~--p~g~f~~nlsgh~~ii 363 (460)
T KOG0285|consen 313 ITLTHHK-------------KSVRALCLHPKENLFAS--------------ASPDNIKQWKL--PEGEFLQNLSGHNAII 363 (460)
T ss_pred Eeeeccc-------------ceeeEEecCCchhhhhc--------------cCCccceeccC--Cccchhhcccccccee
Confidence 6677654 23455666664432211 12334445554 2333333344445555
Q ss_pred CceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 459 GGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 459 ~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
..++-..||- +++..++ ..|+..|..+|
T Consensus 364 ntl~~nsD~v--~~~G~dn---g~~~fwdwksg 391 (460)
T KOG0285|consen 364 NTLSVNSDGV--LVSGGDN---GSIMFWDWKSG 391 (460)
T ss_pred eeeeeccCce--EEEcCCc---eEEEEEecCcC
Confidence 5555555552 3332222 46888887775
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.47 Score=53.26 Aligned_cols=230 Identities=12% Similarity=0.135 Sum_probs=130.5
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCC
Q 002194 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (954)
Q Consensus 108 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~ 187 (954)
.+++.++.|.|---+++-.-.. +++.||+..+. +.-+...++.
T Consensus 13 SdRVKsVd~HPtePw~la~Lyn---------------------------------G~V~IWnyetq-tmVksfeV~~--- 55 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYN---------------------------------GDVQIWNYETQ-TMVKSFEVSE--- 55 (794)
T ss_pred CCceeeeecCCCCceEEEeeec---------------------------------CeeEEEecccc-eeeeeeeecc---
Confidence 4466777788877777665443 47888887431 1112223332
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
..+....|-+--.||+..+ ...+|.+++..+++....+...... +..++-.|.--.+..++
T Consensus 56 -~PvRa~kfiaRknWiv~Gs---------DD~~IrVfnynt~ekV~~FeAH~Dy----IR~iavHPt~P~vLtsS----- 116 (794)
T KOG0276|consen 56 -VPVRAAKFIARKNWIVTGS---------DDMQIRVFNYNTGEKVKTFEAHSDY----IRSIAVHPTLPYVLTSS----- 116 (794)
T ss_pred -cchhhheeeeccceEEEec---------CCceEEEEecccceeeEEeeccccc----eeeeeecCCCCeEEecC-----
Confidence 2577788888888988844 4677888888787665554444333 55666666655555431
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC--ccccccccCC-CCc
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP--AVYTSLDPSP-DEK 344 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~--~~~~~~~~Sp-DGk 344 (954)
. | ..-.+|.++-.=...+..++ ..+..++|.| |-.
T Consensus 117 ----------------D-------------------D-------m~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n 154 (794)
T KOG0276|consen 117 ----------------D-------------------D-------MTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN 154 (794)
T ss_pred ----------------C-------------------c-------cEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc
Confidence 1 1 12223333321134444444 6678899999 556
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
..|..+.+ .++.+|.+..... .+++.++..|+..+.|-+-|.+=+..+.
T Consensus 155 tFaS~sLD-------------rTVKVWslgs~~~------------nfTl~gHekGVN~Vdyy~~gdkpylIsg------ 203 (794)
T KOG0276|consen 155 TFASASLD-------------RTVKVWSLGSPHP------------NFTLEGHEKGVNCVDYYTGGDKPYLISG------ 203 (794)
T ss_pred ceeeeecc-------------ccEEEEEcCCCCC------------ceeeeccccCcceEEeccCCCcceEEec------
Confidence 66666643 3888998764321 1122234466777777665544333311
Q ss_pred ccccccCCCeEEEEecCCCCCC-CceEEeecccccCceeeccCCceEEEEE
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGE-GPEILHKLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~-~~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (954)
.....+-+||. ++. -.+.|.++...++.+.|.|.=-.|+..+
T Consensus 204 -----aDD~tiKvWDy---Qtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs 246 (794)
T KOG0276|consen 204 -----ADDLTIKVWDY---QTKSCVQTLEGHTNNVSFVFFHPELPIIISGS 246 (794)
T ss_pred -----CCCceEEEeec---chHHHHHHhhcccccceEEEecCCCcEEEEec
Confidence 22345677875 333 3455666777777777776555444444
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.02 Score=58.56 Aligned_cols=105 Identities=13% Similarity=0.138 Sum_probs=53.4
Q ss_pred eeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEE
Q 002194 146 GLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVAD 225 (954)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d 225 (954)
++...+..+...+.+-+.+-|+|....+|+-.+.-.|..+ +.....+.|||.+..+|..+. .-...|+-+.
T Consensus 60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRi--NrAAt~V~WsP~enkFAVgSg-------ar~isVcy~E 130 (361)
T KOG1523|consen 60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRI--NRAATCVKWSPKENKFAVGSG-------ARLISVCYYE 130 (361)
T ss_pred EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEe--ccceeeEeecCcCceEEeccC-------ccEEEEEEEe
Confidence 3333333333333333357788887555533333333332 346788999999999887431 1123344333
Q ss_pred CCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 226 VDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 226 ~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
+.+.--+..+-...+...+..+.|.|++-+++..
T Consensus 131 --~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 131 --QENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred --cccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 2221111111111111225688999998777755
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.027 Score=62.27 Aligned_cols=269 Identities=15% Similarity=0.155 Sum_probs=133.1
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..++-.|-|.+|+-.+ .+|...|| .+.||...+.+...+. +..++|.|.++.=+.+.......+
T Consensus 402 ~Vr~iSvdp~G~wlasGs-------dDGtvriW--Ei~TgRcvr~~~~d~~-----I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGS-------DDGTVRIW--EIATGRCVRTVQFDSE-----IRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred eEEEEEecCCcceeeecC-------CCCcEEEE--EeecceEEEEEeecce-----eEEEEecCCCCceeEEEEecCceE
Confidence 677788889999999743 33444444 5568877666555553 789999998864333311111110
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEE----e-CCceeEcCCCccccccccCCCCc
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS----L-DGTVKEIGPPAVYTSLDPSPDEK 344 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~----~-~G~~~~l~~~~~~~~~~~SpDGk 344 (954)
..-+ ..|..+. .-...+++........-+ +..-.|.-. + .|-...|..+..+..+.|..+|.
T Consensus 468 ivnp--~~G~~~e---------~~~t~ell~~~~~~~~p~--~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD 534 (733)
T KOG0650|consen 468 IVNP--IFGDRLE---------VGPTKELLASAPNESEPD--AAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD 534 (733)
T ss_pred EeCc--cccchhh---------hcchhhhhhcCCCccCCc--ccceeechhhhhhhccceEEEEecCCccceeeeecCCc
Confidence 0000 0000000 000001111000000000 011123222 1 12234455557788999999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
+|+.+..... ...+.|.++..... ..+.. ...+-+....|.|-...+++.+
T Consensus 535 YlatV~~~~~----------~~~VliHQLSK~~s----Q~PF~--------kskG~vq~v~FHPs~p~lfVaT------- 585 (733)
T KOG0650|consen 535 YLATVMPDSG----------NKSVLIHQLSKRKS----QSPFR--------KSKGLVQRVKFHPSKPYLFVAT------- 585 (733)
T ss_pred eEEEeccCCC----------cceEEEEecccccc----cCchh--------hcCCceeEEEecCCCceEEEEe-------
Confidence 9999884432 23666777653221 11110 0112234567888666555441
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~ 504 (954)
...|.+|++ ....-.+.|..+...+..++.+|.|..|+..+.++ ++..+|++-. .+|......+..
T Consensus 586 -------q~~vRiYdL--~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~----k~~WfDldls-skPyk~lr~H~~ 651 (733)
T KOG0650|consen 586 -------QRSVRIYDL--SKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK----KMCWFDLDLS-SKPYKTLRLHEK 651 (733)
T ss_pred -------ccceEEEeh--hHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC----eeEEEEcccC-cchhHHhhhhhh
Confidence 235777886 22222244444555578899999999999886553 4555565543 122221111111
Q ss_pred ---CccCCCCCCC-eeeccCCcEEEEEE
Q 002194 505 ---DVYSDPGSPM-MRRTSTGTYVIAKI 528 (954)
Q Consensus 505 ---~~~~~~~~~~-~~~spdG~~l~~~~ 528 (954)
.+.-...-|. -+-|+||..++|..
T Consensus 652 avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 652 AVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhhhhhccccceeeeecCCCcEEEEee
Confidence 1111111222 24577888888875
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.034 Score=62.16 Aligned_cols=53 Identities=17% Similarity=0.048 Sum_probs=41.7
Q ss_pred CCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 432 RDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 432 ~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
...|.+|| |....+...|.++...+..+..++||++++.++.+.. .+||.+..
T Consensus 192 ek~lr~wD--prt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt--IrlWdLgq 244 (735)
T KOG0308|consen 192 EKDLRLWD--PRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT--IRLWDLGQ 244 (735)
T ss_pred ccceEEec--cccccceeeeeccccceEEEEEcCCCCeEeecCCCce--EEeeeccc
Confidence 34678888 5777777888888888899999999999999877665 67776643
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.039 Score=59.26 Aligned_cols=104 Identities=8% Similarity=0.009 Sum_probs=58.2
Q ss_pred CCCCceecCCCCEEEEEecCCCC---------CccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCcee
Q 002194 110 PLPALSFSPQRDKILFLKRRALP---------PLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~ 180 (954)
..-.+++||||++||+...+... .+..+..+...+.++.+-..++.....+.+..+.+|++..- .-..
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~---s~ve 280 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL---SYVE 280 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh---HHHH
Confidence 34468899999999997765222 22233344444556666566666666677778889888320 1112
Q ss_pred eeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEE
Q 002194 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVAD 225 (954)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d 225 (954)
.+.+++ ..+..+.-..-+ +++.+ +.++....||-+.
T Consensus 281 tlyGHq--d~v~~IdaL~re-R~vtV------GgrDrT~rlwKi~ 316 (479)
T KOG0299|consen 281 TLYGHQ--DGVLGIDALSRE-RCVTV------GGRDRTVRLWKIP 316 (479)
T ss_pred HHhCCc--cceeeechhccc-ceEEe------ccccceeEEEecc
Confidence 232322 234444333233 34443 2355677888773
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.56 Score=56.93 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=45.3
Q ss_pred CceeeccCCceEEEEEeccc-cceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcE
Q 002194 459 GGISWCDDSLALVYESWYKT-RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTY 537 (954)
Q Consensus 459 ~~~~~spDg~~l~~~~~~~~-~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 537 (954)
.++.|--||++++.+.-... +...+.++|.++. ...+..+.... .+.++|-|.|.+++......+ ++..
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~----Lns~se~~~~l-----~~~LsWkPsgs~iA~iq~~~s-d~~I 268 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDREGA----LNSTSEPVEGL-----QHSLSWKPSGSLIAAIQCKTS-DSDI 268 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEecccch----hhcccCccccc-----ccceeecCCCCeEeeeeecCC-CCcE
Confidence 35899999999887543222 1134555555531 11122222221 223899999998887665443 3367
Q ss_pred EEEecCCCC
Q 002194 538 ILLNGNGAT 546 (954)
Q Consensus 538 ~~~~~~~~~ 546 (954)
+||-++|-+
T Consensus 269 vffErNGL~ 277 (1265)
T KOG1920|consen 269 VFFERNGLR 277 (1265)
T ss_pred EEEecCCcc
Confidence 888777743
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.15 Score=60.65 Aligned_cols=128 Identities=12% Similarity=0.110 Sum_probs=80.6
Q ss_pred cEEEEEeecCCcccccccCCCCcceEEEeccCceEEEe-ccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002194 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL-CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (954)
Q Consensus 344 k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l-~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~ 422 (954)
.+|||..... .+|.+.|.+|...+.+ .... ..+.++.|||||+.|+|.+....
T Consensus 319 tkiAfv~~~~------------~~L~~~D~dG~n~~~ve~~~~-------------~~i~sP~~SPDG~~vAY~ts~e~- 372 (912)
T TIGR02171 319 AKLAFRNDVT------------GNLAYIDYTKGASRAVEIEDT-------------ISVYHPDISPDGKKVAFCTGIEG- 372 (912)
T ss_pred eeEEEEEcCC------------CeEEEEecCCCCceEEEecCC-------------CceecCcCCCCCCEEEEEEeecC-
Confidence 4688877432 2889999998877766 3322 12246789999999999432221
Q ss_pred CCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCce-EEEEEeccc-------cceEEEEEcCCCCC-C
Q 002194 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA-LVYESWYKT-------RRTRTWVISPGSKD-V 493 (954)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~-l~~~~~~~~-------~~~~l~~~d~~~~~-~ 493 (954)
++++..||+.++ ...+.....|.-....+..-...+.|.. |+|.++..+ .....|.+.-..|+ +
T Consensus 373 ------~~g~s~vYv~~L-~t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gkfg 445 (912)
T TIGR02171 373 ------LPGKSSVYVRNL-NASGSGLVKLPVENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGKFG 445 (912)
T ss_pred ------CCCCceEEEEeh-hccCCCceEeecccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCCCC
Confidence 023557999997 2344455666544555555555677765 788775432 12357888877664 4
Q ss_pred CcEEEecCCCC
Q 002194 494 APRILFDRSSE 504 (954)
Q Consensus 494 ~~~~l~~~~~~ 504 (954)
.|+.++++...
T Consensus 446 ~p~kl~dga~h 456 (912)
T TIGR02171 446 TPKKLFDGAYH 456 (912)
T ss_pred Cchhhhccccc
Confidence 67778776543
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.032 Score=62.90 Aligned_cols=116 Identities=11% Similarity=0.074 Sum_probs=72.7
Q ss_pred cccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 333 ~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
-..+++.-|.-|+++..-.++ +|.|+++..++. +........+..++ .+..-|.|-
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDr-------------nirif~i~sgKq~k~FKgs~~~eG~lI----------Kv~lDPSgi 654 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDR-------------NIRIFDIESGKQVKSFKGSRDHEGDLI----------KVILDPSGI 654 (1080)
T ss_pred eEEEeeeCCCcceEEEEeccc-------------ceEEEeccccceeeeecccccCCCceE----------EEEECCCcc
Confidence 345677788889988877443 899999985544 43333222222222 234455554
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
+|+-. -....|-++|. ..|.-..+.+++...+.++.|++|=+.|+..+.+.= .-+|.++.
T Consensus 655 Y~atS-------------csdktl~~~Df--~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC--IFvW~lp~ 714 (1080)
T KOG1408|consen 655 YLATS-------------CSDKTLCFVDF--VSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC--IFVWKLPL 714 (1080)
T ss_pred EEEEe-------------ecCCceEEEEe--ccchhhhhhcCcchheeeeeecccchhheeecCCce--EEEEECch
Confidence 33322 11335777775 355555677888888999999999999988765532 45666654
|
|
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.097 Score=51.02 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=66.6
Q ss_pred cHHHHHHHHCCcEEEEcCCCC-CCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh-
Q 002194 702 STSVLLWLARGFAILGGPTTP-IIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH- 779 (954)
Q Consensus 702 ~~~~~~la~~G~~V~~~~~~~-~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~- 779 (954)
......+-+.+|..+.+..+. +.|||.. ...+..+|+..+++++...++. +.|.++|||-|..=.++++..
T Consensus 56 ~~L~~~lde~~wslVq~q~~Ssy~G~Gt~-----slk~D~edl~~l~~Hi~~~~fS--t~vVL~GhSTGcQdi~yYlTnt 128 (299)
T KOG4840|consen 56 TMLNRYLDENSWSLVQPQLRSSYNGYGTF-----SLKDDVEDLKCLLEHIQLCGFS--TDVVLVGHSTGCQDIMYYLTNT 128 (299)
T ss_pred HHHHHHHhhccceeeeeeccccccccccc-----cccccHHHHHHHHHHhhccCcc--cceEEEecCccchHHHHHHHhc
Confidence 356667778999998744432 3456654 2345678999999988776643 389999999999988888743
Q ss_pred -CCCcccEEEEeccCCCCC
Q 002194 780 -APHLFCCGIARSGAYNRT 797 (954)
Q Consensus 780 -~p~~~~a~v~~~~~~~~~ 797 (954)
.+..+.|+|+.+|++|.+
T Consensus 129 ~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 129 TKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred cchHHHHHHHHhCccchhh
Confidence 345689999999999876
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.058 Score=54.92 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=77.1
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..+..++|||.-+.++..+. +++++.+|++... .... .......+-+....||.||
T Consensus 28 DsIS~l~FSP~~~~~~~A~S------------WD~tVR~wevq~~g~~~~-----------ka~~~~~~PvL~v~Wsddg 84 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGS------------WDGTVRIWEVQNSGQLVP-----------KAQQSHDGPVLDVCWSDDG 84 (347)
T ss_pred cchheeEeccccCceEEecc------------cCCceEEEEEecCCcccc-----------hhhhccCCCeEEEEEccCC
Confidence 77889999995444443331 4569999998742 2111 0111122334578999999
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCc--eEEEEEeccccceEEEEEcC
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSL--ALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~~l~~~d~ 488 (954)
.+++.. +-...+-+||+ ..++..++..++..+..+.|-+... -|+..+|+++ |-.+|+
T Consensus 85 skVf~g-------------~~Dk~~k~wDL---~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKT----lKfWD~ 144 (347)
T KOG0647|consen 85 SKVFSG-------------GCDKQAKLWDL---ASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKT----LKFWDT 144 (347)
T ss_pred ceEEee-------------ccCCceEEEEc---cCCCeeeeeecccceeEEEEecCCCcceeEecccccc----eeeccc
Confidence 755443 33557888996 7779999999999999999987755 5777888876 444454
Q ss_pred CC
Q 002194 489 GS 490 (954)
Q Consensus 489 ~~ 490 (954)
..
T Consensus 145 R~ 146 (347)
T KOG0647|consen 145 RS 146 (347)
T ss_pred CC
Confidence 43
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.26 Score=55.84 Aligned_cols=62 Identities=16% Similarity=0.357 Sum_probs=35.7
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
+.+..+.|.-+.+.|-. + +.+|---+|.+= .|.-....+..... ..+.++.|.-||+.|.++
T Consensus 72 ~sV~vvTWNe~~QKLTt-S------Dt~GlIiVWmly-kgsW~EEMiNnRnK---SvV~SmsWn~dG~kIcIv 133 (1189)
T KOG2041|consen 72 ASVMVVTWNENNQKLTT-S------DTSGLIIVWMLY-KGSWCEEMINNRNK---SVVVSMSWNLDGTKICIV 133 (1189)
T ss_pred ceEEEEEeccccccccc-c------CCCceEEEEeee-cccHHHHHhhCcCc---cEEEEEEEcCCCcEEEEE
Confidence 36777889866655543 2 244555555443 22222333332221 236689999999999877
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0054 Score=43.04 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=26.6
Q ss_pred eEEeecccccCceeeccCCceEEEEEecc-ccceEEEE
Q 002194 449 EILHKLDLRYGGISWCDDSLALVYESWYK-TRRTRTWV 485 (954)
Q Consensus 449 ~~l~~~~~~~~~~~~spDg~~l~~~~~~~-~~~~~l~~ 485 (954)
++++........++|||||++|+|.++.. .+..+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 45666677778899999999999999876 12366774
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.27 Score=55.20 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=40.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeec--ccCCCccccccccceeEecCCeEEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
..+....|.| |+..+... .|...+..+|+++++.+.. .-... +.+.+.+|.|+...+|++
T Consensus 101 nAifDl~wap-ge~~lVsa--------sGDsT~r~Wdvk~s~l~G~~~~~GH~----~SvkS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 101 NAIFDLKWAP-GESLLVSA--------SGDSTIRPWDVKTSRLVGGRLNLGHT----GSVKSECFMPTNPAVFCT 162 (720)
T ss_pred ceeEeeccCC-CceeEEEc--------cCCceeeeeeeccceeecceeecccc----cccchhhhccCCCcceee
Confidence 3688899999 77665543 2456677778777766544 22222 226688999999888877
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.7 Score=53.01 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=44.2
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
.+....|--|+..|.+.. +..+|.++|+++....-+....++ +....||||++++++.
T Consensus 70 ~i~s~~fl~d~~~i~v~~---------~~G~iilvd~et~~~eivg~vd~G-----I~aaswS~Dee~l~li 127 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVIT---------ALGDIILVDPETLELEIVGNVDNG-----ISAASWSPDEELLALI 127 (1265)
T ss_pred ceEEEEEecccceEEEEe---------cCCcEEEEcccccceeeeeeccCc-----eEEEeecCCCcEEEEE
Confidence 566777888888888865 366788888888766655544443 7789999999999987
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.7 Score=49.99 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=88.8
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
+.+..+.|+|-.-.-+|++. +++.|.+.|+++...+.+...... +....++.|+.+..
T Consensus 235 ~~Vs~l~F~P~n~s~i~ssS------------yDGtiR~~D~~~~i~e~v~s~~~d----------~~~fs~~d~~~e~~ 292 (498)
T KOG4328|consen 235 GPVSGLKFSPANTSQIYSSS------------YDGTIRLQDFEGNISEEVLSLDTD----------NIWFSSLDFSAESR 292 (498)
T ss_pred ccccceEecCCChhheeeec------------cCceeeeeeecchhhHHHhhcCcc----------ceeeeeccccCCCc
Confidence 77889999996654444331 345888999988766555543211 12234566777777
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
.+++. +..+..-++|. -.++.+...+.-++..+.++++.|--.+++..+.-+. ...||.+.-=.+
T Consensus 293 ~vl~~-------------~~~G~f~~iD~-R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~-T~kIWD~R~l~~ 357 (498)
T KOG4328|consen 293 SVLFG-------------DNVGNFNVIDL-RTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ-TAKIWDLRQLRG 357 (498)
T ss_pred cEEEe-------------ecccceEEEEe-ecCCccchhhhhhhcccceeecCCCCchheeecccCc-ceeeeehhhhcC
Confidence 66665 33444445554 1244445555556668899999998777655544332 155776553333
Q ss_pred CCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 492 ~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
..+|.+-+-.+...+.+ ..|||+|-.|+...
T Consensus 358 K~sp~lst~~HrrsV~s------AyFSPs~gtl~TT~ 388 (498)
T KOG4328|consen 358 KASPFLSTLPHRRSVNS------AYFSPSGGTLLTTC 388 (498)
T ss_pred CCCcceecccccceeee------eEEcCCCCceEeec
Confidence 22232222222222323 67999998877765
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.44 Score=49.22 Aligned_cols=123 Identities=12% Similarity=0.127 Sum_probs=67.9
Q ss_pred eEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccce
Q 002194 326 KEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSI 404 (954)
Q Consensus 326 ~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~ 404 (954)
+.|..- ..+++++|.||.+.|+.+.+.. ..|+.++.+|+..+.+.-... .....+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~------------~~i~els~~G~vlr~i~l~g~------------~D~EgI 70 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEP------------GEIYELSLDGKVLRRIPLDGF------------GDYEGI 70 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTT------------TEEEEEETT--EEEEEE-SS-------------SSEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCC------------CEEEEEcCCCCEEEEEeCCCC------------CCceeE
Confidence 344433 4578899999999988888553 278888888777666654221 123456
Q ss_pred eeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-----eEEe-----ecccccCceeeccCCceEEEEE
Q 002194 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-----EILH-----KLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 405 ~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-----~~l~-----~~~~~~~~~~~spDg~~l~~~~ 474 (954)
++.-+|+. +..+ ...+.++++.++ ..+... +.+. .......+++|.|.+..|+.+.
T Consensus 71 ~y~g~~~~--vl~~-----------Er~~~L~~~~~~-~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k 136 (248)
T PF06977_consen 71 TYLGNGRY--VLSE-----------ERDQRLYIFTID-DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK 136 (248)
T ss_dssp EE-STTEE--EEEE-----------TTTTEEEEEEE-----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE
T ss_pred EEECCCEE--EEEE-----------cCCCcEEEEEEe-ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe
Confidence 77666642 2211 124467776651 122211 1121 1223467899999999988876
Q ss_pred eccccceEEEEEcC
Q 002194 475 WYKTRRTRTWVISP 488 (954)
Q Consensus 475 ~~~~~~~~l~~~d~ 488 (954)
+++. ..||.++.
T Consensus 137 E~~P--~~l~~~~~ 148 (248)
T PF06977_consen 137 ERKP--KRLYEVNG 148 (248)
T ss_dssp ESSS--EEEEEEES
T ss_pred CCCC--hhhEEEcc
Confidence 6554 67888886
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.76 Score=51.46 Aligned_cols=147 Identities=12% Similarity=0.015 Sum_probs=90.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.....+++|||+.++.... +.+...++++|..+++.......... ....+.+|||+.++.+.
T Consensus 117 ~P~~~~~~~~~~~vYV~n~------~~~~~~vsvid~~t~~~~~~~~vG~~-----P~~~a~~p~g~~vyv~~------- 178 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANA------GNGNNTVSVIDAATNKVTATIPVGNT-----PTGVAVDPDGNKVYVTN------- 178 (381)
T ss_pred CCceEEECCCCCEEEEEec------ccCCceEEEEeCCCCeEEEEEecCCC-----cceEEECCCCCeEEEEe-------
Confidence 5677899999999887653 11578999999888776555332221 24788999999888761
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCC-ceeE------cCCCccccccccCCC
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKE------IGPPAVYTSLDPSPD 342 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G-~~~~------l~~~~~~~~~~~SpD 342 (954)
. ....|..++..+ ...+ +..........++||
T Consensus 179 ---------------~--------------------------~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~ 217 (381)
T COG3391 179 ---------------S--------------------------DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPD 217 (381)
T ss_pred ---------------c--------------------------CCCeEEEEeCCCcceeccccccccccCCCCceEEECCC
Confidence 0 234566777633 3332 222234456789999
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~ 416 (954)
|+++...-.... ...+...|...+.......... .. ....+..+|+|+.++..
T Consensus 218 g~~~yV~~~~~~----------~~~v~~id~~~~~v~~~~~~~~----------~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 218 GNRVYVANDGSG----------SNNVLKIDTATGNVTATDLPVG----------SG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred CCEEEEEeccCC----------CceEEEEeCCCceEEEeccccc----------cC-CCCceeECCCCCEEEEE
Confidence 998877664321 2367777777655443311100 00 23467899999965554
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.49 Score=52.97 Aligned_cols=207 Identities=11% Similarity=-0.016 Sum_probs=122.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.......+++|+.++-... ....+.++|.++.....-...+.. ...++++|||+.++++-...
T Consensus 75 ~p~~i~v~~~~~~vyv~~~--------~~~~v~vid~~~~~~~~~~~vG~~-----P~~~~~~~~~~~vYV~n~~~---- 137 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTG--------DSNTVSVIDTATNTVLGSIPVGLG-----PVGLAVDPDGKYVYVANAGN---- 137 (381)
T ss_pred cccceeeCCCCCeEEEecC--------CCCeEEEEcCcccceeeEeeeccC-----CceEEECCCCCEEEEEeccc----
Confidence 3455678889987665432 256788888665444332222221 44789999999999871100
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEc-CCCccccccccCCCCcEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI-GPPAVYTSLDPSPDEKYIL 347 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l-~~~~~~~~~~~SpDGk~l~ 347 (954)
+...++.+|. ++..... ..+......+++|||+.++
T Consensus 138 ------------------------------------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vy 175 (381)
T COG3391 138 ------------------------------------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVY 175 (381)
T ss_pred ------------------------------------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEE
Confidence 1245777777 5543333 2222337889999999888
Q ss_pred EEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
..... .+.+.+.+.++....+ ...... .....+...+.++|||++++.....
T Consensus 176 v~~~~------------~~~v~vi~~~~~~v~~-~~~~~~-------~~~~~~P~~i~v~~~g~~~yV~~~~-------- 227 (381)
T COG3391 176 VTNSD------------DNTVSVIDTSGNSVVR-GSVGSL-------VGVGTGPAGIAVDPDGNRVYVANDG-------- 227 (381)
T ss_pred EEecC------------CCeEEEEeCCCcceec-cccccc-------cccCCCCceEEECCCCCEEEEEecc--------
Confidence 77622 2378888877665544 221100 0111344678999999976665211
Q ss_pred cccCCCeEEEEecCCCCCCCceEE--eecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 428 EVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+....+..++. ..+..... .........+..+|+|+.++...... ..+..+|..+.
T Consensus 228 --~~~~~v~~id~---~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~---~~V~vid~~~~ 285 (381)
T COG3391 228 --SGSNNVLKIDT---ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG---GTVSVIDGATD 285 (381)
T ss_pred --CCCceEEEEeC---CCceEEEeccccccCCCCceeECCCCCEEEEEecCC---CeEEEEeCCCC
Confidence 11346777774 33333332 11111456689999999888775442 45888887764
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.74 Score=53.89 Aligned_cols=106 Identities=17% Similarity=0.120 Sum_probs=68.3
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i 413 (954)
.+-.++||.|+++|..-.+ ++|.+|.--+..- ....+..+..+...+..++||+||..|
T Consensus 208 ~t~~~~spn~~~~Aa~d~d-------------GrI~vw~d~~~~~--------~~~t~t~lHWH~~~V~~L~fS~~G~~L 266 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSD-------------GRILVWRDFGSSD--------DSETCTLLHWHHDEVNSLSFSSDGAYL 266 (792)
T ss_pred ceeEEeccccceEEEeccC-------------CcEEEEecccccc--------ccccceEEEecccccceeEEecCCceE
Confidence 4568899999999887643 3788886544110 111111222344556789999999865
Q ss_pred eEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEec
Q 002194 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (954)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 476 (954)
+-- +....+.+|.+ ++++.+-|..-...+..+.||||+......-.+
T Consensus 267 lSG-------------G~E~VLv~Wq~---~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 267 LSG-------------GREGVLVLWQL---ETGKKQFLPRLGSPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred eec-------------ccceEEEEEee---cCCCcccccccCCeeEEEEEcCCCCeEEEEecC
Confidence 432 23446778885 555655666667778899999999876555443
|
|
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.016 Score=62.92 Aligned_cols=109 Identities=9% Similarity=-0.096 Sum_probs=57.8
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH---CCcEEEEcCCCCCCCCCCccc--chhhHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA---RGFAILGGPTTPIIGEGDEEA--NDRFVEQLVACAE 744 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~---~G~~V~~~~~~~~~G~G~~~~--~~~~~~~~~~D~~ 744 (954)
.|++|++||..... ....+.......+.. ..+.|+..|. ........ ........-..+.
T Consensus 71 ~pt~iiiHGw~~~~------------~~~~~~~~~~~all~~~~~d~NVI~VDW---s~~a~~~Y~~a~~n~~~vg~~la 135 (331)
T PF00151_consen 71 KPTVIIIHGWTGSG------------SSESWIQDMIKALLQKDTGDYNVIVVDW---SRGASNNYPQAVANTRLVGRQLA 135 (331)
T ss_dssp SEEEEEE--TT-TT-------------TTTHHHHHHHHHHCC--S-EEEEEEE----HHHHSS-HHHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCcCCcc------------cchhHHHHHHHHHHhhccCCceEEEEcc---hhhccccccchhhhHHHHHHHHH
Confidence 69999999953111 011122223333433 4788888444 11000000 0011122234445
Q ss_pred HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC--cccEEEEeccC
Q 002194 745 AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSGA 793 (954)
Q Consensus 745 ~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~~ 793 (954)
..+..|.+...+++++|.|+|||+||.+|..+.-.... ++..+....|+
T Consensus 136 ~~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPA 186 (331)
T PF00151_consen 136 KFLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPA 186 (331)
T ss_dssp HHHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B
T ss_pred HHHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcc
Confidence 55667775556889999999999999999998887655 68888888775
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.44 Score=52.93 Aligned_cols=117 Identities=11% Similarity=0.137 Sum_probs=66.3
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccC-C
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD-K 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD-g 410 (954)
..++.+.|+-||-.+++.... +.+++||+....+-.+..+. ...|+ ..+.|-+. +
T Consensus 229 ~svTal~F~d~gL~~aVGts~-------------G~v~iyDLRa~~pl~~kdh~--~e~pi---------~~l~~~~~~~ 284 (703)
T KOG2321|consen 229 PSVTALKFRDDGLHVAVGTST-------------GSVLIYDLRASKPLLVKDHG--YELPI---------KKLDWQDTDQ 284 (703)
T ss_pred CcceEEEecCCceeEEeeccC-------------CcEEEEEcccCCceeecccC--Cccce---------eeecccccCC
Confidence 347788999999998887633 38999999987665555432 22333 34566443 2
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+..++.. ....+-+|+- .+|.....+ ....++..+.+-|++..++++ ++.. ....|.++.=+
T Consensus 285 q~~v~S~-------------Dk~~~kiWd~--~~Gk~~asi-Ept~~lND~C~~p~sGm~f~A-ne~~-~m~~yyiP~LG 346 (703)
T KOG2321|consen 285 QNKVVSM-------------DKRILKIWDE--CTGKPMASI-EPTSDLNDFCFVPGSGMFFTA-NESS-KMHTYYIPSLG 346 (703)
T ss_pred CceEEec-------------chHHhhhccc--ccCCceeec-cccCCcCceeeecCCceEEEe-cCCC-cceeEEccccC
Confidence 2233331 1224566763 344333333 334447778888887755544 4443 24455554433
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.46 Score=49.06 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=37.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVC 260 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~ 260 (954)
.++..+|.||.++|+.+.+ +...|+.++.+|.-.+++.-.+... .+.+++..+|++++.
T Consensus 23 e~SGLTy~pd~~tLfaV~d--------~~~~i~els~~G~vlr~i~l~g~~D----~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQD--------EPGEIYELSLDGKVLRRIPLDGFGD----YEGITYLGNGRYVLS 81 (248)
T ss_dssp -EEEEEEETTTTEEEEEET--------TTTEEEEEETT--EEEEEE-SS-SS----EEEEEE-STTEEEEE
T ss_pred CccccEEcCCCCeEEEEEC--------CCCEEEEEcCCCCEEEEEeCCCCCC----ceeEEEECCCEEEEE
Confidence 4888999999998877653 4678999998765555543222222 568888888865553
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.22 Score=53.89 Aligned_cols=142 Identities=12% Similarity=0.008 Sum_probs=76.6
Q ss_pred ceEEEEEe-CCceeEcCC-C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccC
Q 002194 314 TQLVLVSL-DGTVKEIGP-P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (954)
Q Consensus 314 ~~l~~~~~-~G~~~~l~~-~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~ 390 (954)
.+||.+.+ +|..-.+-. . ..++-..||-||++|+..+.+. .+.+|.+.. .+...+.....
T Consensus 103 g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg-------------~V~vW~l~~----lv~a~~~~~~~ 165 (476)
T KOG0646|consen 103 GNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDG-------------AVLVWLLTD----LVSADNDHSVK 165 (476)
T ss_pred CcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCc-------------cEEEEEEEe----ecccccCCCcc
Confidence 45888888 886544433 3 6678889999999998887543 777887541 01110000111
Q ss_pred Cc-cccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCce
Q 002194 391 PI-AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (954)
Q Consensus 391 p~-~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~ 469 (954)
|. .|+.+--.+.++.-.+-|..-.. +.++.+..+.+|++ ..+..-.-...+..+..++.+|-++.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl-----------~TaS~D~t~k~wdl---S~g~LLlti~fp~si~av~lDpae~~ 231 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARL-----------YTASEDRTIKLWDL---SLGVLLLTITFPSSIKAVALDPAERV 231 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceE-----------EEecCCceEEEEEe---ccceeeEEEecCCcceeEEEcccccE
Confidence 11 11222122233333332211111 22345567788886 44432211334566788899999987
Q ss_pred EEEEEeccccceEEEEEcCCC
Q 002194 470 LVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~ 490 (954)
++....+ +.+|+.++.+
T Consensus 232 ~yiGt~~----G~I~~~~~~~ 248 (476)
T KOG0646|consen 232 VYIGTEE----GKIFQNLLFK 248 (476)
T ss_pred EEecCCc----ceEEeeehhc
Confidence 7766433 3466666543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.69 Score=49.08 Aligned_cols=124 Identities=15% Similarity=0.192 Sum_probs=79.0
Q ss_pred ccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCC------CceEEeecccccCceeeccCCce
Q 002194 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE------GPEILHKLDLRYGGISWCDDSLA 469 (954)
Q Consensus 396 ~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~------~~~~l~~~~~~~~~~~~spDg~~ 469 (954)
++.+.+-.+.|.|-....+.. + +....|.+|.+ |.++- ....|+.+...+..++|.|--.-
T Consensus 79 GHt~~vLDi~w~PfnD~vIAS-----g-------SeD~~v~vW~I-Pe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N 145 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIAS-----G-------SEDTKVMVWQI-PENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN 145 (472)
T ss_pred CccccccccccCccCCceeec-----C-------CCCceEEEEEC-CCcccccCcccceEEEeecceeEEEEeecccchh
Confidence 444556678999866543332 1 33446666665 44332 23456778888999999998777
Q ss_pred EEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCC
Q 002194 470 LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEG 549 (954)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (954)
++.++..++ .+.+++..+| + ..++-.+...+++ ++|+.||..++-...+
T Consensus 146 VLlsag~Dn---~v~iWnv~tg--e-ali~l~hpd~i~S------~sfn~dGs~l~TtckD------------------- 194 (472)
T KOG0303|consen 146 VLLSAGSDN---TVSIWNVGTG--E-ALITLDHPDMVYS------MSFNRDGSLLCTTCKD------------------- 194 (472)
T ss_pred hHhhccCCc---eEEEEeccCC--c-eeeecCCCCeEEE------EEeccCCceeeeeccc-------------------
Confidence 766655543 3555666665 2 2222225555666 8899999999887632
Q ss_pred CCCeEEEEECCCCCeE
Q 002194 550 NIPFLDLFDINTGSKE 565 (954)
Q Consensus 550 ~~~~l~~~d~~~g~~~ 565 (954)
..|.+||..+|+..
T Consensus 195 --KkvRv~dpr~~~~v 208 (472)
T KOG0303|consen 195 --KKVRVIDPRRGTVV 208 (472)
T ss_pred --ceeEEEcCCCCcEe
Confidence 34889999888754
|
|
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.01 Score=64.52 Aligned_cols=125 Identities=26% Similarity=0.298 Sum_probs=79.4
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC-cEEEEcCCC-CCCCC---
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG-FAILGGPTT-PIIGE--- 726 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G-~~V~~~~~~-~~~G~--- 726 (954)
+...++.|. .++.+ .-++|++|||.|-++.++-.+.++ ..|++.+ -+|+..+|+ |..|+
T Consensus 121 LYlNVW~P~-~~p~n---~tVlVWiyGGGF~sGt~SLdvYdG------------k~la~~envIvVs~NYRvG~FGFL~l 184 (601)
T KOG4389|consen 121 LYLNVWAPA-ADPYN---LTVLVWIYGGGFYSGTPSLDVYDG------------KFLAAVENVIVVSMNYRVGAFGFLYL 184 (601)
T ss_pred eEEEEeccC-CCCCC---ceEEEEEEcCccccCCcceeeecc------------ceeeeeccEEEEEeeeeeccceEEec
Confidence 566677784 23333 449999999988777665555432 2455544 444445554 22332
Q ss_pred -CCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--CCCcccEEEEeccCCC
Q 002194 727 -GDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAYN 795 (954)
Q Consensus 727 -G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~~ 795 (954)
|..+++. .-.+-|..-|+.|++++ -.-||++|.+.|.|+|+.-+.+=+.. ....|+-+|+.+|..+
T Consensus 185 ~~~~eaPG---NmGl~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 185 PGHPEAPG---NMGLLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred CCCCCCCC---ccchHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 3333333 34567888999999987 23699999999999998755432221 1146888888887654
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.48 Score=54.53 Aligned_cols=116 Identities=10% Similarity=0.033 Sum_probs=67.1
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce--EEEeccCCCcccCCccccccccCccceeeccC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD 409 (954)
..++++.|||---...++..+ .+.+.+||+.--. .++++.+. +-+.-+.|+|+
T Consensus 177 ESiRDV~fsp~~~~~F~s~~d------------sG~lqlWDlRqp~r~~~k~~AH~-------------GpV~c~nwhPn 231 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHD------------SGYLQLWDLRQPDRCEKKLTAHN-------------GPVLCLNWHPN 231 (839)
T ss_pred hhhhceeeccCCCceEEEecC------------CceEEEeeccCchhHHHHhhccc-------------CceEEEeecCC
Confidence 788999999944333333322 2389999997321 23344332 33455889998
Q ss_pred CCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE--eecccccCceeeccCCceE-EEEEeccccceEEEEE
Q 002194 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLAL-VYESWYKTRRTRTWVI 486 (954)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l-~~~~~~~~~~~~l~~~ 486 (954)
+..|+-- +....+-+|+. ++.....+ ......+..+.|-|+-++. +..+.-.. ..|+++
T Consensus 232 r~~lATG-------------GRDK~vkiWd~---t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~d--tsV~VW 293 (839)
T KOG0269|consen 232 REWLATG-------------GRDKMVKIWDM---TDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVD--TSVHVW 293 (839)
T ss_pred Cceeeec-------------CCCccEEEEec---cCCCccceeEEeecceeeeeeeccCccchhhhhhcccc--ceEEEE
Confidence 8755443 22346778885 44444333 3445567889999997764 44443333 345555
Q ss_pred cCCC
Q 002194 487 SPGS 490 (954)
Q Consensus 487 d~~~ 490 (954)
|+.-
T Consensus 294 DvrR 297 (839)
T KOG0269|consen 294 DVRR 297 (839)
T ss_pred eecc
Confidence 5443
|
|
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.043 Score=55.43 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=39.2
Q ss_pred HHHHHHHHCCcE---EEEcCCCCCCCCCCcccchhh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHH
Q 002194 703 TSVLLWLARGFA---ILGGPTTPIIGEGDEEANDRF---VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (954)
Q Consensus 703 ~~~~~la~~G~~---V~~~~~~~~~G~G~~~~~~~~---~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~ 776 (954)
.....|+++||. |+..++ |.+........ .......+.+.|+.+++. ... +|-|+||||||.++-++
T Consensus 20 ~~~~~l~~~GY~~~~vya~ty----g~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~--TGa-kVDIVgHS~G~~iaR~y 92 (219)
T PF01674_consen 20 TLAPYLKAAGYCDSEVYALTY----GSGNGSPSVQNAHMSCESAKQLRAFIDAVLAY--TGA-KVDIVGHSMGGTIARYY 92 (219)
T ss_dssp HHHHHHHHTT--CCCEEEE------S-CCHHTHHHHHHB-HHHHHHHHHHHHHHHHH--HT---EEEEEETCHHHHHHHH
T ss_pred HHHHHHHHcCCCcceeEeccC----CCCCCCCcccccccchhhHHHHHHHHHHHHHh--hCC-EEEEEEcCCcCHHHHHH
Confidence 457789999999 677444 22111111111 112235666666666654 334 89999999999999888
Q ss_pred HHh
Q 002194 777 LAH 779 (954)
Q Consensus 777 a~~ 779 (954)
+..
T Consensus 93 i~~ 95 (219)
T PF01674_consen 93 IKG 95 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.4 Score=49.39 Aligned_cols=240 Identities=17% Similarity=0.181 Sum_probs=123.8
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
+....+++++..++....+ ..+.+|+... + ......+..... ..
T Consensus 68 i~~~~~~~~~~~~~~~~~d---------------------------------~~~~~~~~~~-~-~~~~~~~~~~~~-~~ 111 (466)
T COG2319 68 ITSIAFSPDGELLLSGSSD---------------------------------GTIKLWDLDN-G-EKLIKSLEGLHD-SS 111 (466)
T ss_pred EEEEEECCCCcEEEEecCC---------------------------------CcEEEEEcCC-C-ceeEEEEeccCC-Cc
Confidence 4456778888777766543 3677888743 1 002222322111 13
Q ss_pred ccceee-cCCCCeEEEEEeeccccCCCCceEEEEEECCC--CceeecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 191 LNFVTW-SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT--GKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 191 ~~~~~w-SPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
+....+ ++++..++... ......+.+++..+ .....+...... +..+.|+|+++.++....
T Consensus 112 ~~~~~~~~~~~~~~~~~~-------~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~---- 175 (466)
T COG2319 112 VSKLALSSPDGNSILLAS-------SSLDGTVKLWDLSTPGKLIRTLEGHSES-----VTSLAFSPDGKLLASGSS---- 175 (466)
T ss_pred eeeEEEECCCcceEEecc-------CCCCccEEEEEecCCCeEEEEEecCccc-----EEEEEECCCCCEEEecCC----
Confidence 444555 88888444332 11133566666665 333333333332 567999999995554300
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-ccccccccCCCCc
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEK 344 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~-~~~~~~~~SpDGk 344 (954)
....+..+++ .+. ...+... ..+..++|+|+|+
T Consensus 176 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 211 (466)
T COG2319 176 --------------------------------------------LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG 211 (466)
T ss_pred --------------------------------------------CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc
Confidence 0123445555 333 2333333 6778889999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEE--eccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE--LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~--l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~ 422 (954)
.++..... ...+.+||...+.... +..+. ... ...|+|++..++..
T Consensus 212 ~~~~~~~~------------d~~i~~wd~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~------ 259 (466)
T COG2319 212 LLIASGSS------------DGTIRLWDLSTGKLLRSTLSGHS-------------DSV-VSSFSPDGSLLASG------ 259 (466)
T ss_pred eEEEEecC------------CCcEEEEECCCCcEEeeecCCCC-------------cce-eEeECCCCCEEEEe------
Confidence 44444111 2366688766333222 11111 111 11699999433322
Q ss_pred CCccccccCCCeEEEEecCCCCCCC-ceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 423 GDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
.....+.+++. ..... ...+..+...+..+.|+|++..++....+ + ...+| +..+.
T Consensus 260 -------~~d~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~-~~~~~--~~~~~ 316 (466)
T COG2319 260 -------SSDGTIRLWDL--RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD-G-TVRLW--DLETG 316 (466)
T ss_pred -------cCCCcEEEeee--cCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCC-C-cEEEE--EcCCC
Confidence 33446777775 11222 22222334556677999998888884444 3 25677 55543
|
|
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.099 Score=52.32 Aligned_cols=144 Identities=15% Similarity=0.118 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC-----CcccEEEEeccCCCCCCCC-------CCCccc-
Q 002194 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP-----HLFCCGIARSGAYNRTLTP-------FGFQNE- 806 (954)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p-----~~~~a~v~~~~~~~~~~~~-------~~~~~~- 806 (954)
..=+..++.+|.++..++ ++-++||||||.....++..+. ..+.-.|++++.++..... .....+
T Consensus 119 s~wlk~~msyL~~~Y~i~--k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~v~~~~~~ 196 (288)
T COG4814 119 SKWLKKAMSYLQKHYNIP--KFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTDVLKDGPG 196 (288)
T ss_pred HHHHHHHHHHHHHhcCCc--eeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchheeeccCcc
Confidence 344568889999997764 8999999999999998887652 1367777777777621111 001000
Q ss_pred -cchhhhcHHHHHhcCcccccCCC--CCCEEEEEeCC------CCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC--CCC
Q 002194 807 -DRTLWEATSTYVEMSPFMSANKL--KKPILLVHGEE------DNNSGTLTMQSDRFFNALKGHGALCRLVILPF--ESH 875 (954)
Q Consensus 807 -~~~~~~~~~~~~~~sp~~~~~~~--~~P~Lii~G~~------D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~H 875 (954)
..+.+ ..|... +..++ .+-+|+|.|+. |..|| ...+...+..+...++.++..+|+| +.|
T Consensus 197 ~~~t~y---~~y~~~----n~k~v~~~~evl~IaGDl~dg~~tDG~Vp--~assls~~~lf~~~~ksy~e~~~~Gk~a~H 267 (288)
T COG4814 197 LIKTPY---YDYIAK----NYKKVSPNTEVLLIAGDLDDGKQTDGAVP--WASSLSIYHLFKKNGKSYIESLYKGKDARH 267 (288)
T ss_pred ccCcHH---HHHHHh----cceeCCCCcEEEEEecccccCCcCCCcee--chHhHHHHHHhccCcceeEEEeeeCCcchh
Confidence 00000 111110 11111 35699999975 45677 7778888888888888777778886 467
Q ss_pred cCCCcccHHHHHHHHHHHHHH
Q 002194 876 GYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 876 ~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.-. .++ ..+...+..||-+
T Consensus 268 s~l-hen-~~v~~yv~~FLw~ 286 (288)
T COG4814 268 SKL-HEN-PTVAKYVKNFLWE 286 (288)
T ss_pred hcc-CCC-hhHHHHHHHHhhc
Confidence 643 232 4556667777643
|
|
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.017 Score=50.94 Aligned_cols=60 Identities=27% Similarity=0.277 Sum_probs=47.9
Q ss_pred CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
..|+||+.++.|..+| +..++++.++|... +++..++.||+... ....-+.+.+.+||..
T Consensus 34 ~~piL~l~~~~Dp~TP--~~~a~~~~~~l~~s----~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 34 APPILVLGGTHDPVTP--YEGARAMAARLPGS----RLVTVDGAGHGVYA-GGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCEEEEecCcCCCCc--HHHHHHHHHHCCCc----eEEEEeccCcceec-CCChHHHHHHHHHHHc
Confidence 4899999999999998 99999999988654 89999999999753 3334566666666654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=95.84 E-value=1.7 Score=44.60 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=30.9
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEecc
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD 383 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~ 383 (954)
-..+.++||||+..||++... +.|.++|+.|.+...|..
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~-------------G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAEST-------------GTIRVFDLMGSELFVIPP 82 (282)
T ss_pred chheEEEECCCCcEEEEEcCC-------------CeEEEEecccceeEEcCc
Confidence 456778999999999998743 389999999877665543
|
|
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.37 Score=50.11 Aligned_cols=220 Identities=16% Similarity=0.159 Sum_probs=109.1
Q ss_pred EEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC
Q 002194 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (954)
+++.-| .|+.+++-... +..|++|-.|--..... ..|..+-.........+.|.|+.. +.
T Consensus 4 v~t~~G-~v~V~v~G~~~------~~kp~ilT~HDvGlNh~----------scF~~ff~~~~m~~i~~~f~i~Hi---~a 63 (283)
T PF03096_consen 4 VETPYG-SVHVTVQGDPK------GNKPAILTYHDVGLNHK----------SCFQGFFNFEDMQEILQNFCIYHI---DA 63 (283)
T ss_dssp EEETTE-EEEEEEESS--------TTS-EEEEE--TT--HH----------HHCHHHHCSHHHHHHHTTSEEEEE---E-
T ss_pred eccCce-EEEEEEEecCC------CCCceEEEeccccccch----------HHHHHHhcchhHHHHhhceEEEEE---eC
Confidence 444454 57777774321 13799999986211000 001111111222334577888873 33
Q ss_pred CCC--CCcccchhhH----HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC
Q 002194 724 IGE--GDEEANDRFV----EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (954)
Q Consensus 724 ~G~--G~~~~~~~~~----~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~ 797 (954)
.|+ |....+..+. .++.+++..+++++ .+ +.+..+|--+|+++-+..|..+|+++-++|++++.....
T Consensus 64 PGqe~ga~~~p~~y~yPsmd~LAe~l~~Vl~~f----~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~ 137 (283)
T PF03096_consen 64 PGQEEGAATLPEGYQYPSMDQLAEMLPEVLDHF----GL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAA 137 (283)
T ss_dssp TTTSTT-----TT-----HHHHHCTHHHHHHHH----T-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S--
T ss_pred CCCCCCcccccccccccCHHHHHHHHHHHHHhC----Cc--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCc
Confidence 343 3333333332 23444444554444 33 469999999999999999999999999999998754311
Q ss_pred --------------CCCCCCccc--cchhh---------hc----------------H-------HHHHhc-CcccccCC
Q 002194 798 --------------LTPFGFQNE--DRTLW---------EA----------------T-------STYVEM-SPFMSANK 828 (954)
Q Consensus 798 --------------~~~~~~~~~--~~~~~---------~~----------------~-------~~~~~~-sp~~~~~~ 828 (954)
....+.... ....| .+ + +.|... +.......
T Consensus 138 gw~Ew~~~K~~~~~L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~ 217 (283)
T PF03096_consen 138 GWMEWFYQKLSSWLLYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPS 217 (283)
T ss_dssp -HHHHHHHHHH-------CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTT
T ss_pred cHHHHHHHHHhcccccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCC
Confidence 000011100 00000 00 0 111111 11123345
Q ss_pred CCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 829 LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 829 ~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
..+|+|++.|+.-+. .+.+.++..+|.. ...+++..+++|=... .+.+..+.+.+.=|++.
T Consensus 218 ~~c~vLlvvG~~Sp~----~~~vv~~ns~Ldp--~~ttllkv~dcGglV~-eEqP~klaea~~lFlQG 278 (283)
T PF03096_consen 218 LGCPVLLVVGDNSPH----VDDVVEMNSKLDP--TKTTLLKVADCGGLVL-EEQPGKLAEAFKLFLQG 278 (283)
T ss_dssp CCS-EEEEEETTSTT----HHHHHHHHHHS-C--CCEEEEEETT-TT-HH-HH-HHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCcc----hhhHHHHHhhcCc--ccceEEEecccCCccc-ccCcHHHHHHHHHHHcc
Confidence 569999999998865 6788899998854 3588888998766542 45555566666555543
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.81 Score=46.92 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=34.4
Q ss_pred eEeceEEEEccCCCCCCce-eeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECC
Q 002194 161 FYTGIGIHQLFPDGKLGQE-IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD 227 (954)
Q Consensus 161 ~~~~l~l~~~~~~g~~~~~-~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~ 227 (954)
.+....||.++. +.. .+.++++ +.++.+.|+|.|..++..+ +++..+||.+.++
T Consensus 168 ADhTA~iWs~Es----g~CL~~Y~GH~--GSVNsikfh~s~~L~lTaS-------GD~taHIW~~av~ 222 (481)
T KOG0300|consen 168 ADHTARIWSLES----GACLATYTGHT--GSVNSIKFHNSGLLLLTAS-------GDETAHIWKAAVN 222 (481)
T ss_pred cccceeEEeecc----ccceeeecccc--cceeeEEeccccceEEEcc-------CCcchHHHHHhhc
Confidence 335667888854 321 1223322 4789999999887666644 6778899975543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.03 Score=63.39 Aligned_cols=81 Identities=12% Similarity=0.141 Sum_probs=48.9
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
+.|.+||+.. + ...+.|+++. ..+..+.|+|=|.+.|- +.-..++-++|..-..+........
T Consensus 92 gtiK~wDlee-A--k~vrtLtgh~--~~~~sv~f~P~~~~~a~---------gStdtd~~iwD~Rk~Gc~~~~~s~~--- 154 (825)
T KOG0267|consen 92 GTIKVWDLEE-A--KIVRTLTGHL--LNITSVDFHPYGEFFAS---------GSTDTDLKIWDIRKKGCSHTYKSHT--- 154 (825)
T ss_pred Cceeeeehhh-h--hhhhhhhccc--cCcceeeeccceEEecc---------ccccccceehhhhccCceeeecCCc---
Confidence 5899999953 1 2344455433 36777889998876532 3335566666655333333322221
Q ss_pred cccccceeEecCCeEEEEE
Q 002194 243 NAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~ 261 (954)
.++..+.++|||++++..
T Consensus 155 -~vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 155 -RVVDVLRLSPDGRWVASG 172 (825)
T ss_pred -ceeEEEeecCCCceeecc
Confidence 126688999999998854
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.49 Score=49.02 Aligned_cols=85 Identities=13% Similarity=0.177 Sum_probs=55.9
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
+-|+|.++.. ++ -...+.+ +|..++...+.|+.-+|+.+.. ....|.++++.++....+..+-+ +.
T Consensus 115 GvIrVid~~~-~~--~~~~~~g--hG~sINeik~~p~~~qlvls~S--------kD~svRlwnI~~~~Cv~VfGG~e-gH 180 (385)
T KOG1034|consen 115 GVIRVIDVVS-GQ--CSKNYRG--HGGSINEIKFHPDRPQLVLSAS--------KDHSVRLWNIQTDVCVAVFGGVE-GH 180 (385)
T ss_pred eEEEEEecch-hh--hccceec--cCccchhhhcCCCCCcEEEEec--------CCceEEEEeccCCeEEEEecccc-cc
Confidence 4688888743 21 1223322 4568999999998877776543 35567777888887776654332 22
Q ss_pred cccccceeEecCCeEEEEE
Q 002194 243 NAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~ 261 (954)
...+-++.|++||.+|+..
T Consensus 181 rdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred cCcEEEEEEcCCCCeeecc
Confidence 3335689999999988855
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.66 Score=52.39 Aligned_cols=99 Identities=8% Similarity=0.020 Sum_probs=59.0
Q ss_pred CcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCC
Q 002194 365 PRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV 443 (954)
Q Consensus 365 ~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 443 (954)
.+.+.+||..+. +...|..+ ...++.+..++||.+++-. +..+.|.+|++
T Consensus 192 ek~lr~wDprt~~kimkLrGH-------------TdNVr~ll~~dDGt~~ls~-------------sSDgtIrlWdL--- 242 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLRGH-------------TDNVRVLLVNDDGTRLLSA-------------SSDGTIRLWDL--- 242 (735)
T ss_pred ccceEEeccccccceeeeecc-------------ccceEEEEEcCCCCeEeec-------------CCCceEEeeec---
Confidence 348999998854 44444433 2466788899999987765 45668889986
Q ss_pred CCCCceEE---eecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002194 444 QGEGPEIL---HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 444 ~g~~~~~l---~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 499 (954)
| +.+-+ ..+...+..+.-+|+=+.+++. .++ ..|++.|+... .+.+.+.
T Consensus 243 -g-qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG-~rd---~~i~~Tdl~n~-~~~tlic 294 (735)
T KOG0308|consen 243 -G-QQRCLATYIVHKEGVWALQSSPSFTHVYSG-GRD---GNIYRTDLRNP-AKSTLIC 294 (735)
T ss_pred -c-ccceeeeEEeccCceEEEeeCCCcceEEec-CCC---CcEEecccCCc-hhheEee
Confidence 2 22222 2233334444445555555554 332 45888888775 2334443
|
|
| >KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.013 Score=64.60 Aligned_cols=90 Identities=14% Similarity=0.113 Sum_probs=66.5
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH-HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (954)
.-+|+++|||.|... +... ...+.+.|+ +.|.-|+..+| +.+++..++...+++.-|.-
T Consensus 396 ~sli~HcHGGGfVAq--------sSkS----HE~YLr~Wa~aL~cPiiSVdY--------SLAPEaPFPRaleEv~fAYc 455 (880)
T KOG4388|consen 396 RSLIVHCHGGGFVAQ--------SSKS----HEPYLRSWAQALGCPIISVDY--------SLAPEAPFPRALEEVFFAYC 455 (880)
T ss_pred ceEEEEecCCceeee--------cccc----ccHHHHHHHHHhCCCeEEeee--------ccCCCCCCCcHHHHHHHHHH
Confidence 358999999965432 1111 124555666 47999998777 67777788889999999999
Q ss_pred HHHHcC---CCCCCcEEEEeeChHHHHHHHHHHh
Q 002194 749 EVVRRG---VAHPSKIAVGGHSYGAFMTANLLAH 779 (954)
Q Consensus 749 ~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~ 779 (954)
|++++. ....+||.+.|.|+||++...++.+
T Consensus 456 W~inn~allG~TgEriv~aGDSAGgNL~~~VaLr 489 (880)
T KOG4388|consen 456 WAINNCALLGSTGERIVLAGDSAGGNLCFTVALR 489 (880)
T ss_pred HHhcCHHHhCcccceEEEeccCCCcceeehhHHH
Confidence 999872 2346899999999999987766653
|
|
| >COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.062 Score=57.42 Aligned_cols=174 Identities=15% Similarity=0.104 Sum_probs=96.6
Q ss_pred CCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH
Q 002194 696 EFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (954)
Q Consensus 696 ~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 775 (954)
+|..........|.++|+-|+- .++.-| +......+....|+.+.+++...+- ...++.++|+|+|+-+--.
T Consensus 271 GWr~lDk~v~~~l~~~gvpVvG---vdsLRY---fW~~rtPe~~a~Dl~r~i~~y~~~w--~~~~~~liGySfGADvlP~ 342 (456)
T COG3946 271 GWRDLDKEVAEALQKQGVPVVG---VDSLRY---FWSERTPEQIAADLSRLIRFYARRW--GAKRVLLIGYSFGADVLPF 342 (456)
T ss_pred chhhhhHHHHHHHHHCCCceee---eehhhh---hhccCCHHHHHHHHHHHHHHHHHhh--CcceEEEEeecccchhhHH
Confidence 3555556677889999999998 333322 1222334677889999998887763 3469999999999987766
Q ss_pred HHHhCCCcccEEEEeccCCCCCC-CCCCCccccchhhhcHHHHHhcCcccccCCCCC-CEEEEEeC--CCCCCCCchHHH
Q 002194 776 LLAHAPHLFCCGIARSGAYNRTL-TPFGFQNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGE--EDNNSGTLTMQS 851 (954)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~-P~Lii~G~--~D~~v~~~~~~~ 851 (954)
+-.+-|...+..|....+..... ..+.+.-+...-+... ....+...+.++.. .+..|.|. +|..|| -
T Consensus 343 ~~n~L~~~~r~~v~~~~ll~l~~~~~fe~~v~gWlg~~~~---g~~~~~~~~~~l~~~~v~CiYG~~e~d~~Cp--~--- 414 (456)
T COG3946 343 AYNRLPPATRQRVRMVSLLGLGRTADFEISVEGWLGMAGE---GAGDVVPDIAKLPLARVQCIYGQEEKDTACP--S--- 414 (456)
T ss_pred HHHhCCHHHHHHHHHHHHHhccccceEEEEEeeeeccCCc---CCCCcchhhhhCCcceeEEEecCccccccCC--c---
Confidence 66665543332222222211110 0111110000000000 01233444555543 67888885 455665 2
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
|+..| ++.+.+|| ||.| .++...+.+.|++=++.
T Consensus 415 ------l~~~~--~~~v~lpG-gHHF--d~dy~~la~~il~~~~~ 448 (456)
T COG3946 415 ------LKAKG--VDTVKLPG-GHHF--DGDYEKLAKAILQGMRL 448 (456)
T ss_pred ------chhhc--ceeEecCC-Cccc--CccHHHHHHHHHHHHHh
Confidence 23333 46677898 6666 45556666777766533
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.9 Score=44.56 Aligned_cols=119 Identities=12% Similarity=0.155 Sum_probs=68.4
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
..+++.+|+||.+.|..+.+..+ .+.-.+.+|.-++.+.-.... ....+.|.-+|+
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~------------~iVElt~~GdlirtiPL~g~~------------DpE~Ieyig~n~ 141 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPA------------AIVELTKEGDLIRTIPLTGFS------------DPETIEYIGGNQ 141 (316)
T ss_pred ccccceeeCCCcceEEEecCCCc------------eEEEEecCCceEEEecccccC------------ChhHeEEecCCE
Confidence 55889999999999988875532 444445567666665542211 123456666665
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCC----C-ceEEee--c-ccccCceeeccCCceEEEEEeccccceEE
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE----G-PEILHK--L-DLRYGGISWCDDSLALVYESWYKTRRTRT 483 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~----~-~~~l~~--~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (954)
..+ ++. ....++++.+++.+.- . ...|.. . .....+++|+|+.+.++++.+++. ..|
T Consensus 142 fvi--~dE-----------R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P--~~I 206 (316)
T COG3204 142 FVI--VDE-----------RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP--IGI 206 (316)
T ss_pred EEE--Eeh-----------hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC--cEE
Confidence 221 111 1335555554211110 0 111211 1 234568999999999999987765 778
Q ss_pred EEEcCC
Q 002194 484 WVISPG 489 (954)
Q Consensus 484 ~~~d~~ 489 (954)
|.++..
T Consensus 207 ~~~~~~ 212 (316)
T COG3204 207 FEVTQS 212 (316)
T ss_pred EEEecC
Confidence 888743
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.62 Score=50.54 Aligned_cols=59 Identities=7% Similarity=0.105 Sum_probs=42.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
.+...+=+|+|.+|+-. ....+||+|.+.+|..-.+...... .+.-+.|+.||..|+..
T Consensus 83 ~v~al~s~n~G~~l~ag---------~i~g~lYlWelssG~LL~v~~aHYQ----~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAG---------TISGNLYLWELSSGILLNVLSAHYQ----SITCLKFSDDGSHIITG 141 (476)
T ss_pred ceeeeecCCCceEEEee---------cccCcEEEEEeccccHHHHHHhhcc----ceeEEEEeCCCcEEEec
Confidence 56777889999877652 2467999999999987554432222 26678899999998866
|
|
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.021 Score=58.13 Aligned_cols=53 Identities=21% Similarity=0.195 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC----CcccEEEEeccC
Q 002194 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP----HLFCCGIARSGA 793 (954)
Q Consensus 741 ~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p----~~~~a~v~~~~~ 793 (954)
.-...|++|+.+.-.-.+.+|.+.|||.||++|..+++..+ +++..+.+..++
T Consensus 66 ~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgP 122 (224)
T PF11187_consen 66 PQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGP 122 (224)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCC
Confidence 33456677776642223446999999999999999998843 467777777653
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.084 Score=60.26 Aligned_cols=150 Identities=13% Similarity=0.057 Sum_probs=83.3
Q ss_pred EEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcc----cHHHHHHHHCCcEEE
Q 002194 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIG----STSVLLWLARGFAIL 716 (954)
Q Consensus 641 ~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~la~~G~~V~ 716 (954)
.+.+....+..+..|++.-.+ ++. ..|+|||+.|||.++.-.......+|......+ ......|... ..+|
T Consensus 15 yl~~~~~~~~~lfyw~~~s~~-~~~---~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an~l 89 (415)
T PF00450_consen 15 YLPVNDNENAHLFYWFFESRN-DPE---DDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKF-ANLL 89 (415)
T ss_dssp EEEECTTTTEEEEEEEEE-SS-GGC---SS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGT-SEEE
T ss_pred EEecCCCCCcEEEEEEEEeCC-CCC---CccEEEEecCCceeccccccccccCceEEeecccccccccccccccc-cceE
Confidence 345555567789888885443 333 379999999999877655445555554443110 1222234444 4444
Q ss_pred EcCCCCCCCCCCcccchh---hHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEeeChHHHHHHHHHHh----C------CC
Q 002194 717 GGPTTPIIGEGDEEANDR---FVEQLVACAEAAVEEVVR-RGVAHPSKIAVGGHSYGAFMTANLLAH----A------PH 782 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~---~~~~~~~D~~~av~~l~~-~~~~d~~ri~l~G~S~GG~~a~~~a~~----~------p~ 782 (954)
..+..-.+|+........ ......+|+..++..... .+.....++.|+|-||||..+-.+|.. . +=
T Consensus 90 ~iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~i 169 (415)
T PF00450_consen 90 FIDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKI 169 (415)
T ss_dssp EE--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTS
T ss_pred EEeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhcccccccccc
Confidence 433222344433322222 234566777777764444 455556689999999999987666542 2 12
Q ss_pred cccEEEEeccCCC
Q 002194 783 LFCCGIARSGAYN 795 (954)
Q Consensus 783 ~~~a~v~~~~~~~ 795 (954)
.++++++.+|..+
T Consensus 170 nLkGi~IGng~~d 182 (415)
T PF00450_consen 170 NLKGIAIGNGWID 182 (415)
T ss_dssp EEEEEEEESE-SB
T ss_pred ccccceecCcccc
Confidence 3889999988755
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.11 Score=53.64 Aligned_cols=211 Identities=17% Similarity=0.154 Sum_probs=114.8
Q ss_pred eeeEeceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCC
Q 002194 159 MSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP 238 (954)
Q Consensus 159 ~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~ 238 (954)
+..+..|.|||.++ - .-.+.|++++ +.+....+ |.+.|+- ++....|.++|.++|+.....-+.
T Consensus 213 GlrDnTikiWD~n~-~--~c~~~L~GHt--GSVLCLqy--d~rviis---------GSSDsTvrvWDv~tge~l~tlihH 276 (499)
T KOG0281|consen 213 GLRDNTIKIWDKNS-L--ECLKILTGHT--GSVLCLQY--DERVIVS---------GSSDSTVRVWDVNTGEPLNTLIHH 276 (499)
T ss_pred ccccCceEEecccc-H--HHHHhhhcCC--CcEEeeec--cceEEEe---------cCCCceEEEEeccCCchhhHHhhh
Confidence 33346889999853 1 2234565544 34555554 4554433 445678888899999875543333
Q ss_pred CccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEE
Q 002194 239 DIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (954)
Q Consensus 239 ~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~ 318 (954)
-+. +-.+.++ +|-.+-++ .+ ....+|.
T Consensus 277 cea----VLhlrf~-ng~mvtcS----------------------kD--------------------------rsiaVWd 303 (499)
T KOG0281|consen 277 CEA----VLHLRFS-NGYMVTCS----------------------KD--------------------------RSIAVWD 303 (499)
T ss_pred cce----eEEEEEe-CCEEEEec----------------------CC--------------------------ceeEEEe
Confidence 222 3355565 45333332 00 1123444
Q ss_pred EEe-CC-ceeEc-CCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCcc
Q 002194 319 VSL-DG-TVKEI-GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIA 393 (954)
Q Consensus 319 ~~~-~G-~~~~l-~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~ 393 (954)
++. +. ..+++ ... ..+..+.|+ .|+|+..+.++ +|.+|+..+.+. +.|..+...
T Consensus 304 m~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDR-------------TikvW~~st~efvRtl~gHkRG------ 362 (499)
T KOG0281|consen 304 MASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDR-------------TIKVWSTSTCEFVRTLNGHKRG------ 362 (499)
T ss_pred ccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCc-------------eEEEEeccceeeehhhhccccc------
Confidence 443 21 22222 233 556666664 67888887554 899999997654 444443211
Q ss_pred ccccccCccceeec-cCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEE
Q 002194 394 FNSVRKGMRSINWR-SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVY 472 (954)
Q Consensus 394 ~~~~~~g~~~~~ws-pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~ 472 (954)
++-- -.|+ +++. -+....|.+|++ ..|.-.+.|.+++.-+.-+.| |.++|+.
T Consensus 363 ----------IAClQYr~r-lvVS------------GSSDntIRlwdi--~~G~cLRvLeGHEeLvRciRF--d~krIVS 415 (499)
T KOG0281|consen 363 ----------IACLQYRDR-LVVS------------GSSDNTIRLWDI--ECGACLRVLEGHEELVRCIRF--DNKRIVS 415 (499)
T ss_pred ----------ceehhccCe-EEEe------------cCCCceEEEEec--cccHHHHHHhchHHhhhheee--cCceeee
Confidence 1110 0122 1121 134567888886 344455777777777777888 6788887
Q ss_pred EEeccccceEEEEEcC
Q 002194 473 ESWYKTRRTRTWVISP 488 (954)
Q Consensus 473 ~~~~~~~~~~l~~~d~ 488 (954)
.+.++. .++|.+..
T Consensus 416 GaYDGk--ikvWdl~a 429 (499)
T KOG0281|consen 416 GAYDGK--IKVWDLQA 429 (499)
T ss_pred ccccce--EEEEeccc
Confidence 765433 55665543
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.8 Score=44.82 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=33.5
Q ss_pred EEEEEe-CCc-eeEcCCC---ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC
Q 002194 316 LVLVSL-DGT-VKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (954)
Q Consensus 316 l~~~~~-~G~-~~~l~~~---~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g 375 (954)
|-+.|. +|+ +..+-.+ ..+..++||||+.||+.+|+.+ ++.++.+..
T Consensus 206 IRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg-------------TlHiF~l~~ 257 (346)
T KOG2111|consen 206 IRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG-------------TLHIFSLRD 257 (346)
T ss_pred EEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC-------------eEEEEEeec
Confidence 455676 663 3344333 6778899999999999999654 777777764
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.18 E-value=3.5 Score=42.31 Aligned_cols=174 Identities=14% Similarity=0.157 Sum_probs=98.4
Q ss_pred CCceEEeecccccCceeeccCC-ceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEE
Q 002194 446 EGPEILHKLDLRYGGISWCDDS-LALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYV 524 (954)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l 524 (954)
++..--+....+.-.++++|-- +.++|+.... ..-+++|.++. .+++.+........|+. -.|||||++|
T Consensus 58 Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPG---tf~~vfD~~~~-~~pv~~~s~~~RHfyGH-----Gvfs~dG~~L 128 (366)
T COG3490 58 GKIVFATALPARGHGIAFHPALPRAVAFARRPG---TFAMVFDPNGA-QEPVTLVSQEGRHFYGH-----GVFSPDGRLL 128 (366)
T ss_pred CceeeeeecccccCCeecCCCCcceEEEEecCC---ceEEEECCCCC-cCcEEEecccCceeecc-----cccCCCCcEE
Confidence 3333333445556778999985 4566664433 45778888886 46777766555555543 3599999999
Q ss_pred EEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEec
Q 002194 525 IAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKES 604 (954)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s 604 (954)
+.+.++.+ .++..|-+||... ...++-+-... - +.. .+..+.+||+.++....+
T Consensus 129 YATEndfd----------------~~rGViGvYd~r~-~fqrvgE~~t~--G------iGp-Hev~lm~DGrtlvvanGG 182 (366)
T COG3490 129 YATENDFD----------------PNRGVIGVYDARE-GFQRVGEFSTH--G------IGP-HEVTLMADGRTLVVANGG 182 (366)
T ss_pred EeecCCCC----------------CCCceEEEEeccc-ccceecccccC--C------cCc-ceeEEecCCcEEEEeCCc
Confidence 88875432 2345677888763 33333221100 0 000 114577888888876552
Q ss_pred C--------------CCCceEEEEECCCCceeEeecCCCCCCCcCCCceEEEEEEcCCCeEEEEEEEc
Q 002194 605 K--------------TENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYL 658 (954)
Q Consensus 605 ~--------------~~p~~l~~~~~~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~ 658 (954)
- .+.+.+.+++..+|+..+-..++ +++..+..+.+.+ ..||..+.+.-|.
T Consensus 183 IethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp---~~l~~lSiRHld~-g~dgtvwfgcQy~ 246 (366)
T COG3490 183 IETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP---ASLRQLSIRHLDI-GRDGTVWFGCQYR 246 (366)
T ss_pred eecccccCccccchhhcCccEEEEeccccchhhhccCc---hhhhhcceeeeee-CCCCcEEEEEEee
Confidence 1 12355667776666532211111 1233344555554 4688888887775
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.36 Score=50.81 Aligned_cols=139 Identities=19% Similarity=0.304 Sum_probs=80.3
Q ss_pred EeceEEEEccCCCCC-CceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCC--ceeecccCC
Q 002194 162 YTGIGIHQLFPDGKL-GQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSP 238 (954)
Q Consensus 162 ~~~l~l~~~~~~g~~-~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g--~~~~lt~~~ 238 (954)
..+|++|...+ |.= -..+++++++ ..+-...|||.-+.++++.. -++...|| |+..+ ++.-.+...
T Consensus 233 ~~~I~lw~~~~-g~W~vd~~Pf~gH~--~SVEDLqWSptE~~vfaScS------~DgsIrIW--DiRs~~~~~~~~~kAh 301 (440)
T KOG0302|consen 233 VKGIHLWEPST-GSWKVDQRPFTGHT--KSVEDLQWSPTEDGVFASCS------CDGSIRIW--DIRSGPKKAAVSTKAH 301 (440)
T ss_pred ccceEeeeecc-CceeecCccccccc--cchhhhccCCccCceEEeee------cCceEEEE--EecCCCccceeEeecc
Confidence 35789998764 311 1234555433 47889999998888877653 33445555 55444 333333222
Q ss_pred CccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEE
Q 002194 239 DIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (954)
Q Consensus 239 ~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~ 318 (954)
.. .+..+.|+.+-.+|++... | |+-.||-
T Consensus 302 ~s----DVNVISWnr~~~lLasG~D----------------------------------------d-------Gt~~iwD 330 (440)
T KOG0302|consen 302 NS----DVNVISWNRREPLLASGGD----------------------------------------D-------GTLSIWD 330 (440)
T ss_pred CC----ceeeEEccCCcceeeecCC----------------------------------------C-------ceEEEEE
Confidence 22 2778889977766665410 0 3333444
Q ss_pred EEe--CCce-eEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc
Q 002194 319 VSL--DGTV-KEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (954)
Q Consensus 319 ~~~--~G~~-~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~ 374 (954)
+.. .|.+ ..+... ..++++.|+|....++.++.. +.+|.+||+.
T Consensus 331 LR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~------------D~QitiWDls 378 (440)
T KOG0302|consen 331 LRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE------------DNQITIWDLS 378 (440)
T ss_pred hhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC------------CCcEEEEEee
Confidence 433 3422 223333 788999999977666555533 2389999986
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.89 Score=50.65 Aligned_cols=213 Identities=13% Similarity=0.141 Sum_probs=108.0
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce--eecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
..+.+..||||++|+-+ +....+|-++|+..-.. .+-+.... +.....|.|=..+++...+...
T Consensus 53 ast~ik~s~DGqY~lAt--------G~YKP~ikvydlanLSLKFERhlDae~------V~feiLsDD~SK~v~L~~DR~I 118 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLAT--------GTYKPQIKVYDLANLSLKFERHLDAEV------VDFEILSDDYSKSVFLQNDRTI 118 (703)
T ss_pred ccceeEecCCCcEEEEe--------cccCCceEEEEcccceeeeeecccccc------eeEEEeccchhhheEeecCcee
Confidence 45678899999998875 45678888888765322 22222221 2222334444444444211111
Q ss_pred CCCCCCCCCCCCceeeccCCceeeech--h-hhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-ccccccccCC
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRT--F-QDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSP 341 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~--~-~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~-~~~~~~~~Sp 341 (954)
..- +..+..+..|. + .|+.-+...-..+.......||++++ .|. +..+... +.+..+..++
T Consensus 119 efH-------------ak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~ 185 (703)
T KOG2321|consen 119 EFH-------------AKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE 185 (703)
T ss_pred eeh-------------hhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC
Confidence 100 00000000000 0 01111222222333234567999999 774 3333333 5566677787
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEe------ccCCCcccCCccccccccCccceeeccCCCCce
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VREL------CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l------~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~ 414 (954)
-...|++.... +.+..||...+. +..| ..+++.+. ...+.++.|+-||=.++
T Consensus 186 ~hgLla~Gt~~-------------g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~--------~~svTal~F~d~gL~~a 244 (703)
T KOG2321|consen 186 EHGLLACGTED-------------GVVEFWDPRDKSRVGTLDAASSVNSHPGGDA--------APSVTALKFRDDGLHVA 244 (703)
T ss_pred ccceEEecccC-------------ceEEEecchhhhhheeeecccccCCCccccc--------cCcceEEEecCCceeEE
Confidence 77677766533 378888877432 2222 22222111 12357789999886655
Q ss_pred EEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec--ccccCceeeccC
Q 002194 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRYGGISWCDD 466 (954)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--~~~~~~~~~spD 466 (954)
+- ...+.++++|+ -..++-.+..+ ...+..+.|-+.
T Consensus 245 VG-------------ts~G~v~iyDL---Ra~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 245 VG-------------TSTGSVLIYDL---RASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred ee-------------ccCCcEEEEEc---ccCCceeecccCCccceeeeccccc
Confidence 54 33568899996 44454444333 334556777654
|
|
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.25 Score=54.61 Aligned_cols=132 Identities=15% Similarity=0.135 Sum_probs=84.5
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH-HCCcEEEEcCCCCCC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPII 724 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~ 724 (954)
+..+...+=++|.+..+...+ -|+.+|+-|-. .... .|..........|| +.|-.|+... .+
T Consensus 65 ~~~~~~~Qq~~y~n~~~~~~~---gPiFLmIGGEg--------p~~~---~wv~~~~~~~~~~AkkfgA~v~~lE---HR 127 (514)
T KOG2182|consen 65 SSNGKFFQQRFYNNNQWAKPG---GPIFLMIGGEG--------PESD---KWVGNENLTWLQWAKKFGATVFQLE---HR 127 (514)
T ss_pred cchhhhhhhheeeccccccCC---CceEEEEcCCC--------CCCC---CccccCcchHHHHHHHhCCeeEEee---ee
Confidence 334444555667776653222 69999987721 1111 12111112233444 5788888722 23
Q ss_pred CCCCccc-------chhh--HHHHHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCC
Q 002194 725 GEGDEEA-------NDRF--VEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (954)
Q Consensus 725 G~G~~~~-------~~~~--~~~~~~D~~~av~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (954)
=||.+.. +-.+ ..+.+.|+...++.+..+ +.-++.+.+..|.||-|.|++|+=.++|+++.++|+.+++.
T Consensus 128 FYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 128 FYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred ccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 3444321 1122 346789999999998776 45666799999999999999999999999999999887753
|
|
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.14 Score=49.39 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=48.8
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCC-CCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGE-GDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP 781 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~-G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p 781 (954)
.+.....+.||.|+..+....+-. -....+..+....++-+.-+..+++.. ..++.++++-||+||.+++.++-+.|
T Consensus 135 Pyi~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~ 212 (297)
T KOG3967|consen 135 PYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFP 212 (297)
T ss_pred hHHHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcC
Confidence 345555678999998444222111 001122333344455555555555543 45678999999999999999999987
Q ss_pred C
Q 002194 782 H 782 (954)
Q Consensus 782 ~ 782 (954)
+
T Consensus 213 ~ 213 (297)
T KOG3967|consen 213 D 213 (297)
T ss_pred C
Confidence 5
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.87 Score=51.54 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=21.7
Q ss_pred eEEEEEe-CCc-eeEcCCCccccccccCCCCcEEEEEeec
Q 002194 315 QLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSIH 352 (954)
Q Consensus 315 ~l~~~~~-~G~-~~~l~~~~~~~~~~~SpDGk~l~~~s~~ 352 (954)
.|..+|. +++ ++++.-. .+..+.||+||+++++.+.+
T Consensus 127 ~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 127 FICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp EEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-
T ss_pred CEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCC
Confidence 4778888 664 4445432 36788999999999999733
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.67 E-value=1.1 Score=45.30 Aligned_cols=108 Identities=9% Similarity=0.002 Sum_probs=58.3
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
..+.++|||+++++.+.+. .++..+.+..+++--....++..++ .
T Consensus 161 ~ns~~~snd~~~~~~Vgds---------------------------------~~Vf~y~id~~sey~~~~~~a~t~D--~ 205 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDS---------------------------------RRVFRYAIDDESEYIENIYEAPTSD--H 205 (344)
T ss_pred eeeeEEcCCCceEEEecCC---------------------------------CcceEEEeCCccceeeeeEecccCC--C
Confidence 4456677777777776553 5777888855442222222322222 3
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCC--eEEEEE
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS--TLLVCT 261 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG--~~l~~~ 261 (954)
-...+||......|... .++...||-+.-.+--.+..+. .....++.+..+.||+-| .+|+++
T Consensus 206 gF~~S~s~~~~~FAv~~-------Qdg~~~I~DVR~~~tpm~~~ss-trp~hnGa~R~c~Fsl~g~lDLLf~s 270 (344)
T KOG4532|consen 206 GFYNSFSENDLQFAVVF-------QDGTCAIYDVRNMATPMAEISS-TRPHHNGAFRVCRFSLYGLLDLLFIS 270 (344)
T ss_pred ceeeeeccCcceEEEEe-------cCCcEEEEEecccccchhhhcc-cCCCCCCceEEEEecCCCcceEEEEe
Confidence 45568998777777655 3345555544322211111211 112245558899999866 466665
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.63 E-value=10 Score=43.10 Aligned_cols=100 Identities=10% Similarity=0.159 Sum_probs=59.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
++++..|=+--++++..+++ .+|.|++.++ + .+.+.... +..
T Consensus 57 PvRa~kfiaRknWiv~GsDD---------------------------------~~IrVfnynt-~--ekV~~FeA--H~D 98 (794)
T KOG0276|consen 57 PVRAAKFIARKNWIVTGSDD---------------------------------MQIRVFNYNT-G--EKVKTFEA--HSD 98 (794)
T ss_pred chhhheeeeccceEEEecCC---------------------------------ceEEEEeccc-c--eeeEEeec--ccc
Confidence 45566666666777777665 5889998854 1 23333332 224
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCC-eEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS-TLLV 259 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG-~~l~ 259 (954)
.+...+-+|.--.++..+ ++-...+|.++-.= ...+...+..-. +-.+++.|.. ..++
T Consensus 99 yIR~iavHPt~P~vLtsS-------DDm~iKlW~we~~w-a~~qtfeGH~Hy----VMqv~fnPkD~ntFa 157 (794)
T KOG0276|consen 99 YIRSIAVHPTLPYVLTSS-------DDMTIKLWDWENEW-ACEQTFEGHEHY----VMQVAFNPKDPNTFA 157 (794)
T ss_pred ceeeeeecCCCCeEEecC-------CccEEEEeeccCce-eeeeEEcCcceE----EEEEEecCCCcccee
Confidence 788889999887777755 34466677766221 234444433322 5567777654 3444
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=94.58 E-value=8.2 Score=42.18 Aligned_cols=148 Identities=15% Similarity=0.113 Sum_probs=76.0
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCC--ccccccccCccceeeccCCC
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP--IAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p--~~~~~~~~g~~~~~wspDg~ 411 (954)
..++++.+||..++..- ... .......|+.++.+|...+.+.......... ..--..+.|..+++++|||+
T Consensus 87 ~Egi~~~~~g~~~is~E-~~~------~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~ 159 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSE-GGR------TGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR 159 (326)
T ss_pred hhHeEEecCCCEEEEeC-Ccc------CCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCC
Confidence 34566666665544332 210 0011237888888866555552211110000 01112345667899999999
Q ss_pred CceEEEEec---cCCCccccccCCCeEEEEecCCCCCC-CceEE----ee-----cccccCceeeccCCceEEEEEec--
Q 002194 412 STLYWAETQ---DGGDAKVEVTPRDIIYTQQAEPVQGE-GPEIL----HK-----LDLRYGGISWCDDSLALVYESWY-- 476 (954)
Q Consensus 412 ~i~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~g~-~~~~l----~~-----~~~~~~~~~~spDg~~l~~~~~~-- 476 (954)
.++...+.. ++.......+..-+|+.++. .+.+ ...+. .. ....+..+.+-+|++.|+.....
T Consensus 160 ~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~--~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~ 237 (326)
T PF13449_consen 160 TLFAAMESPLKQDGPRANPDNGSPLRILRYDP--KTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSP 237 (326)
T ss_pred EEEEEECccccCCCcccccccCceEEEEEecC--CCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCC
Confidence 777665533 22111111111234556653 3322 22222 11 34556778999999988887652
Q ss_pred -cccceEEEEEcCCC
Q 002194 477 -KTRRTRTWVISPGS 490 (954)
Q Consensus 477 -~~~~~~l~~~d~~~ 490 (954)
.+...+||.+++..
T Consensus 238 ~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 238 GTGNYKRIYRVDLSD 252 (326)
T ss_pred CccceEEEEEEEccc
Confidence 22457899999764
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=94.57 E-value=6.5 Score=40.51 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=11.5
Q ss_pred CeEEEEECCCCCeE
Q 002194 552 PFLDLFDINTGSKE 565 (954)
Q Consensus 552 ~~l~~~d~~~g~~~ 565 (954)
.+|+.+|+++|+..
T Consensus 222 ~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 222 GRLYALDLKTGKVV 235 (238)
T ss_dssp TEEEEEETTTTEEE
T ss_pred CEEEEEECCCCCEE
Confidence 46999999999754
|
... |
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.37 Score=64.02 Aligned_cols=75 Identities=11% Similarity=0.021 Sum_probs=48.9
Q ss_pred HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh---CCCcccE
Q 002194 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH---APHLFCC 786 (954)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~---~p~~~~a 786 (954)
..++.|+. ....|++.............+++.+.++.+. ...++.++|||+||.++..++.+ .++++..
T Consensus 1092 ~~~~~v~~---~~~~g~~~~~~~~~~l~~la~~~~~~i~~~~-----~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~ 1163 (1296)
T PRK10252 1092 DPQWSIYG---IQSPRPDGPMQTATSLDEVCEAHLATLLEQQ-----PHGPYHLLGYSLGGTLAQGIAARLRARGEEVAF 1163 (1296)
T ss_pred CCCCcEEE---EECCCCCCCCCCCCCHHHHHHHHHHHHHhhC-----CCCCEEEEEechhhHHHHHHHHHHHHcCCceeE
Confidence 45688887 3445555443333345556666655554431 12479999999999999999885 4677777
Q ss_pred EEEecc
Q 002194 787 GIARSG 792 (954)
Q Consensus 787 ~v~~~~ 792 (954)
++.+.+
T Consensus 1164 l~l~~~ 1169 (1296)
T PRK10252 1164 LGLLDT 1169 (1296)
T ss_pred EEEecC
Confidence 777654
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.3 Score=51.44 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=36.9
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC-Ccee--ecccCCCccccc-cccceeEecCCeEEEEE
Q 002194 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKAR--PLFQSPDIYLNA-IFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~-g~~~--~lt~~~~~~~~~-~~~~~~wspDG~~l~~~ 261 (954)
+.....|+|.++| +|....+ +....|..+..++ ++.. .+......++.+ .|..+.-|+||-++++.
T Consensus 382 g~~Lt~PS~d~~g-~vWtv~~-------g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi 451 (573)
T PRK13614 382 GSTLTRPSFSPQD-WVWTAGP-------GGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVI 451 (573)
T ss_pred CCCccCCcccCCC-CEEEeeC-------CCCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEE
Confidence 3457889999999 6665432 1223666655433 1211 000001111222 27789999999999877
|
|
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.044 Score=58.57 Aligned_cols=56 Identities=27% Similarity=0.262 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEec
Q 002194 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (954)
Q Consensus 736 ~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (954)
.++...|....+..|++.......+|+++|.||||++++|.=.++|+.+.++.+.+
T Consensus 144 seQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaS 199 (492)
T KOG2183|consen 144 SEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAAS 199 (492)
T ss_pred HHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhcc
Confidence 35678999999999988765666799999999999999999999999877765544
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.1 Score=54.01 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=40.8
Q ss_pred cEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC---CCcccEEEE
Q 002194 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFCCGIA 789 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~---p~~~~a~v~ 789 (954)
.-|+. ....|++.........+...+...+++..++-+ .++.+.|+|+||++|..+|.+- .+.++-++.
T Consensus 27 ~~v~~---l~a~g~~~~~~~~~~l~~~a~~yv~~Ir~~QP~-----GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~l 98 (257)
T COG3319 27 LPVYG---LQAPGYGAGEQPFASLDDMAAAYVAAIRRVQPE-----GPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGL 98 (257)
T ss_pred ceeec---cccCcccccccccCCHHHHHHHHHHHHHHhCCC-----CCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEE
Confidence 55565 444555432223333445555444544443222 3799999999999999998753 123444444
Q ss_pred ecc
Q 002194 790 RSG 792 (954)
Q Consensus 790 ~~~ 792 (954)
+..
T Consensus 99 lD~ 101 (257)
T COG3319 99 LDA 101 (257)
T ss_pred ecc
Confidence 443
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.52 Score=54.06 Aligned_cols=126 Identities=18% Similarity=0.190 Sum_probs=81.4
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC----
Q 002194 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE---- 726 (954)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~---- 726 (954)
.|...+++|.++. ++ ++..-||.+. +.+.... .......-+++||+++.-|. |..+.
T Consensus 16 ~i~fev~LP~~WN-gR------~~~~GgGG~~-----G~i~~~~------~~~~~~~~~~~G~A~~~TD~-Gh~~~~~~~ 76 (474)
T PF07519_consen 16 NIRFEVWLPDNWN-GR------FLQVGGGGFA-----GGINYAD------GKASMATALARGYATASTDS-GHQGSAGSD 76 (474)
T ss_pred eEEEEEECChhhc-cC------eEEECCCeee-----Ccccccc------cccccchhhhcCeEEEEecC-CCCCCcccc
Confidence 7888899998652 22 4444444322 1111100 00002244689999998333 11111
Q ss_pred CCccc-----chhhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 727 GDEEA-----NDRFVEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 727 G~~~~-----~~~~~~~~~~D~~~av~~l~~~~-~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
..++. -.+|....+.+...+.+.|.+.. ...|++-...|.|-||-.++++|-++|+.|.++|+.+|..+
T Consensus 77 ~~~~~~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~ 151 (474)
T PF07519_consen 77 DASFGNNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAIN 151 (474)
T ss_pred cccccCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHH
Confidence 11121 13455566777777888888763 35678999999999999999999999999999999999654
|
It also includes several bacterial homologues of unknown function. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.22 E-value=4 Score=44.93 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=36.3
Q ss_pred cCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCcc-----------CCCCC-CCeeeccCCcEEE
Q 002194 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVY-----------SDPGS-PMMRRTSTGTYVI 525 (954)
Q Consensus 458 ~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~-----------~~~~~-~~~~~spdG~~l~ 525 (954)
+..+..|.|.|+|+++.+-.+ .|+.+|+... .+|+..-....+... ...+. .|++.|.||+.|+
T Consensus 314 itDI~iSlDDrfLYvs~W~~G---dvrqYDISDP-~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHG---DVRQYDISDP-FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTT---EEEEEE-SST-TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred eEeEEEccCCCEEEEEcccCC---cEEEEecCCC-CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 466889999999999988764 5777777765 466655332211111 11122 3588999999999
Q ss_pred EEE
Q 002194 526 AKI 528 (954)
Q Consensus 526 ~~~ 528 (954)
++.
T Consensus 390 vTn 392 (461)
T PF05694_consen 390 VTN 392 (461)
T ss_dssp EE-
T ss_pred EEe
Confidence 886
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=7 Score=46.15 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=37.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce-----eecccCCCccccccccceeEecCCeEEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-----RPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
....++.|+||+.+|+... ....||+-.+.++.. +.+..... +..+.|.++| .++..
T Consensus 364 ~~~s~avS~~g~~~A~v~~--------~~~~l~vg~~~~~~~~~~~~~~~~~~~~------Lt~PS~d~~g-~vWtv 425 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISA--------DGDSVYVGSLTPGASIGVHSWGVTADGR------LTSPSWDGRG-DLWVV 425 (599)
T ss_pred CccceEEcCCCceEEEEcC--------CCcEEEEeccCCCCccccccceeeccCc------ccCCcCcCCC-CEEEe
Confidence 5678899999999999742 245788876544322 23332222 5688899888 56654
|
|
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.2 Score=51.66 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC----C-----CcccEEEEeccCCCCCCCCCCCccccch
Q 002194 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA----P-----HLFCCGIARSGAYNRTLTPFGFQNEDRT 809 (954)
Q Consensus 739 ~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~----p-----~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 809 (954)
...++...++.|.+. ....+|.|++||||+.+.+.++... + .+|..+|..+|-.+...
T Consensus 75 s~~~l~~~L~~L~~~--~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~----------- 141 (233)
T PF05990_consen 75 SGPALARFLRDLARA--PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDV----------- 141 (233)
T ss_pred HHHHHHHHHHHHHhc--cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHH-----------
Confidence 345555666666555 2346999999999999999886542 1 25667777776433110
Q ss_pred hhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCC
Q 002194 810 LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNN 843 (954)
Q Consensus 810 ~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~ 843 (954)
+...- ..+.+...++.+.+..+|..
T Consensus 142 -------f~~~~--~~~~~~~~~itvy~s~~D~A 166 (233)
T PF05990_consen 142 -------FRSQL--PDLGSSARRITVYYSRNDRA 166 (233)
T ss_pred -------HHHHH--HHHhhcCCCEEEEEcCCchH
Confidence 00000 02233347899999999865
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.12 E-value=4.4 Score=45.59 Aligned_cols=97 Identities=19% Similarity=0.146 Sum_probs=61.8
Q ss_pred CceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhh
Q 002194 217 SKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQ 296 (954)
Q Consensus 217 ~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 296 (954)
+...||++++.+|+...-.... ...+.+....|+.+-..|+...
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~--~h~~~v~~~~~~~~~~ciyS~~---------------------------------- 121 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTD--KHYGNVNEILDAQRLGCIYSVG---------------------------------- 121 (541)
T ss_pred CCccEEEEEecCCeEEEEEecC--CCCCcceeeecccccCceEecC----------------------------------
Confidence 4778899998888764332211 1222355666776665555430
Q ss_pred hhccCccccccccccccceEEEEEe-CCceeEcCCC--ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEec
Q 002194 297 DLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTT 373 (954)
Q Consensus 297 d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~--~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~ 373 (954)
+..++..++. ++...++... ..+.+.++||||+.++..+ .+|.+|++
T Consensus 122 ---------------ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as---------------~~ik~~~~ 171 (541)
T KOG4547|consen 122 ---------------ADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS---------------RQIKVLDI 171 (541)
T ss_pred ---------------CceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc---------------ceEEEEEc
Confidence 2234445555 6655555443 5678899999999998876 27999999
Q ss_pred cCceEE
Q 002194 374 DGIFVR 379 (954)
Q Consensus 374 ~g~~~~ 379 (954)
+++++-
T Consensus 172 ~~kevv 177 (541)
T KOG4547|consen 172 ETKEVV 177 (541)
T ss_pred cCceEE
Confidence 987653
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=94.07 E-value=8.2 Score=39.73 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=23.0
Q ss_pred cCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCC
Q 002194 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD 239 (954)
Q Consensus 197 SPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 239 (954)
.+++++|+... +...|+.+|+.+|+...-...+.
T Consensus 33 ~~~~~~v~~~~---------~~~~l~~~d~~tG~~~W~~~~~~ 66 (238)
T PF13360_consen 33 VPDGGRVYVAS---------GDGNLYALDAKTGKVLWRFDLPG 66 (238)
T ss_dssp EEETTEEEEEE---------TTSEEEEEETTTSEEEEEEECSS
T ss_pred EEeCCEEEEEc---------CCCEEEEEECCCCCEEEEeeccc
Confidence 44677777643 47899999998887654444433
|
... |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.01 E-value=8.8 Score=39.88 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=42.4
Q ss_pred eeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEE
Q 002194 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (954)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (954)
+++++.+ ..++..+|+||.+.|.-+. +....|.-++.+|.-.+.+.-..-.. .+.+.|.-+|+.++
T Consensus 79 kpi~g~~--~nvS~LTynp~~rtLFav~--------n~p~~iVElt~~GdlirtiPL~g~~D----pE~Ieyig~n~fvi 144 (316)
T COG3204 79 KPILGET--ANVSSLTYNPDTRTLFAVT--------NKPAAIVELTKEGDLIRTIPLTGFSD----PETIEYIGGNQFVI 144 (316)
T ss_pred ccccccc--ccccceeeCCCcceEEEec--------CCCceEEEEecCCceEEEecccccCC----hhHeEEecCCEEEE
Confidence 3454443 3589999999998876653 34567777887775555442211111 45788998887665
Q ss_pred E
Q 002194 260 C 260 (954)
Q Consensus 260 ~ 260 (954)
.
T Consensus 145 ~ 145 (316)
T COG3204 145 V 145 (316)
T ss_pred E
Confidence 3
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.096 Score=59.49 Aligned_cols=113 Identities=10% Similarity=0.085 Sum_probs=65.6
Q ss_pred eEEEEEe-CC-ceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCC
Q 002194 315 QLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (954)
Q Consensus 315 ~l~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p 391 (954)
.|-++|+ .+ ..+.|+.. ..+.++.|+|=|.+.+-.+. +.++.+||...........
T Consensus 93 tiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gSt-------------dtd~~iwD~Rk~Gc~~~~~-------- 151 (825)
T KOG0267|consen 93 TIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGST-------------DTDLKIWDIRKKGCSHTYK-------- 151 (825)
T ss_pred ceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccc-------------cccceehhhhccCceeeec--------
Confidence 4667788 55 56677766 77788899999988754442 3478889887332221111
Q ss_pred ccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCC
Q 002194 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDS 467 (954)
Q Consensus 392 ~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg 467 (954)
+...+++.+.|+|||+.++-- .....+-+||+ ..|.-......+.+.+..+-|.|-.
T Consensus 152 ----s~~~vv~~l~lsP~Gr~v~~g-------------~ed~tvki~d~--~agk~~~ef~~~e~~v~sle~hp~e 208 (825)
T KOG0267|consen 152 ----SHTRVVDVLRLSPDGRWVASG-------------GEDNTVKIWDL--TAGKLSKEFKSHEGKVQSLEFHPLE 208 (825)
T ss_pred ----CCcceeEEEeecCCCceeecc-------------CCcceeeeecc--cccccccccccccccccccccCchh
Confidence 222456678999999854432 22345667774 2222222233344555555555544
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.91 E-value=3.7 Score=43.52 Aligned_cols=108 Identities=11% Similarity=0.033 Sum_probs=64.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCC--CCCCceeeeecCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPD--GKLGQEIEIQGFPD 187 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~--g~~~~~~~lt~~~~ 187 (954)
-+.++.||.+|++||....+ ....+|.+..- ...-++.+|.+.++
T Consensus 58 CiNAlqFS~N~~~L~SGGDD---------------------------------~~~~~W~~de~~~~k~~KPI~~~~~~H 104 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDD---------------------------------MHGRVWNVDELMVRKTPKPIGVMEHPH 104 (609)
T ss_pred ccceeeeccCCeEEeecCCc---------------------------------ceeeeechHHHHhhcCCCCceeccCcc
Confidence 36689999999999987765 35567776310 00112344555444
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
...+....|-- |.+.+|. +....+|..-|+++.+...+...... .+.+..+.-+|-...++.+
T Consensus 105 ~SNIF~L~F~~-~N~~~~S--------G~~~~~VI~HDiEt~qsi~V~~~~~~--~~~VY~m~~~P~DN~~~~~ 167 (609)
T KOG4227|consen 105 RSNIFSLEFDL-ENRFLYS--------GERWGTVIKHDIETKQSIYVANENNN--RGDVYHMDQHPTDNTLIVV 167 (609)
T ss_pred ccceEEEEEcc-CCeeEec--------CCCcceeEeeecccceeeeeecccCc--ccceeecccCCCCceEEEE
Confidence 44677777764 5566674 33356788888888877766654431 1113445555655555544
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.83 E-value=7.5 Score=42.28 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=42.6
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
+...+|.-+-+.|++.. +-...|-+||+++|++.+.+...+.. +..+.|.|.--.+..+
T Consensus 246 vl~Ls~n~~~~nVLaSg--------saD~TV~lWD~~~g~p~~s~~~~~k~----Vq~l~wh~~~p~~LLs 304 (463)
T KOG0270|consen 246 VLALSWNRNFRNVLASG--------SADKTVKLWDVDTGKPKSSITHHGKK----VQTLEWHPYEPSVLLS 304 (463)
T ss_pred HHHHHhccccceeEEec--------CCCceEEEEEcCCCCcceehhhcCCc----eeEEEecCCCceEEEe
Confidence 45678888888888853 34677888899999998777644443 7899999876544443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=93.68 E-value=14 Score=41.23 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=30.4
Q ss_pred CeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeE
Q 002194 552 PFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (954)
Q Consensus 552 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~ 623 (954)
..|+.+|.++|+. +|....... . ...+....++.+++... ...++.++..+|+...
T Consensus 289 G~l~~~d~~tG~~--~W~~~~~~~-----~-----~~ssp~i~g~~l~~~~~----~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 289 GVVVALDRRSGSE--LWKNDELKY-----R-----QLTAPAVVGGYLVVGDF----EGYLHWLSREDGSFVA 344 (377)
T ss_pred CeEEEEECCCCcE--EEccccccC-----C-----ccccCEEECCEEEEEeC----CCEEEEEECCCCCEEE
Confidence 3599999998864 454421100 0 00111223555555432 2469999988887644
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.91 Score=47.24 Aligned_cols=198 Identities=12% Similarity=0.132 Sum_probs=102.8
Q ss_pred eceEEEEccCCCCCCce-eeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc-eeecccCCCc
Q 002194 163 TGIGIHQLFPDGKLGQE-IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPLFQSPDI 240 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~-~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~-~~~lt~~~~~ 240 (954)
..+.+||+++ ++. ..+-. +...+.+..|+ +| .++.++ .+-...+|.++..+.. .+++.-+..
T Consensus 257 sTvrvWDv~t----ge~l~tlih--HceaVLhlrf~-ng-~mvtcS-------kDrsiaVWdm~sps~it~rrVLvGHr- 320 (499)
T KOG0281|consen 257 STVRVWDVNT----GEPLNTLIH--HCEAVLHLRFS-NG-YMVTCS-------KDRSIAVWDMASPTDITLRRVLVGHR- 320 (499)
T ss_pred ceEEEEeccC----CchhhHHhh--hcceeEEEEEe-CC-EEEEec-------CCceeEEEeccCchHHHHHHHHhhhh-
Confidence 5889999965 332 22222 33478889998 34 555554 2335667766644421 233322222
Q ss_pred cccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEE
Q 002194 241 YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (954)
Q Consensus 241 ~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~ 320 (954)
+.+..+.| |.++|+.+ + +...|-+++
T Consensus 321 ---AaVNvVdf--d~kyIVsA---------------------S----------------------------gDRTikvW~ 346 (499)
T KOG0281|consen 321 ---AAVNVVDF--DDKYIVSA---------------------S----------------------------GDRTIKVWS 346 (499)
T ss_pred ---hheeeecc--ccceEEEe---------------------c----------------------------CCceEEEEe
Confidence 22455555 55677755 1 223466667
Q ss_pred e-CCceeEcCCC--ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccc
Q 002194 321 L-DGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNS 396 (954)
Q Consensus 321 ~-~G~~~~l~~~--~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~ 396 (954)
. +++-.+...+ .++.-..+ .||.++..+.+ .+|.+||+..+.. +.|..++
T Consensus 347 ~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSD-------------ntIRlwdi~~G~cLRvLeGHE----------- 400 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSD-------------NTIRLWDIECGACLRVLEGHE----------- 400 (499)
T ss_pred ccceeeehhhhcccccceehhc--cCeEEEecCCC-------------ceEEEEeccccHHHHHHhchH-----------
Confidence 6 7765444433 33332222 47777766643 3899999985543 3333322
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE---------eecccccCceeeccCC
Q 002194 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL---------HKLDLRYGGISWCDDS 467 (954)
Q Consensus 397 ~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l---------~~~~~~~~~~~~spDg 467 (954)
.-++-+.| |.++|+-- ...+.|-+|++ .++-+++.. ..+.+++..+.| |.
T Consensus 401 --eLvRciRF--d~krIVSG-------------aYDGkikvWdl--~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~ 459 (499)
T KOG0281|consen 401 --ELVRCIRF--DNKRIVSG-------------AYDGKIKVWDL--QAALDPRAPASTLCLRTLVEHSGRVFRLQF--DE 459 (499)
T ss_pred --Hhhhheee--cCceeeec-------------cccceEEEEec--ccccCCcccccchHHHhhhhccceeEEEee--cc
Confidence 12233444 44555432 22456777775 233333322 334555666666 55
Q ss_pred ceEEEEEecc
Q 002194 468 LALVYESWYK 477 (954)
Q Consensus 468 ~~l~~~~~~~ 477 (954)
..|+..+-++
T Consensus 460 fqIvsssHdd 469 (499)
T KOG0281|consen 460 FQIISSSHDD 469 (499)
T ss_pred eEEEeccCCC
Confidence 6666655443
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.42 E-value=5.5 Score=41.49 Aligned_cols=86 Identities=9% Similarity=0.103 Sum_probs=58.5
Q ss_pred CCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCC--CCCccCC
Q 002194 432 RDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS--SEDVYSD 509 (954)
Q Consensus 432 ~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~--~~~~~~~ 509 (954)
.++|-+.++.....+.+..+..++.++.-++.+-+|..|+.++..+ +-|.++|+.+| +...-..+. ..++|.
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG---TLIRIFdt~~g--~~l~E~RRG~d~A~iy~- 231 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG---TLIRIFDTEDG--TLLQELRRGVDRADIYC- 231 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc---EEEEEEEcCCC--cEeeeeecCCchheEEE-
Confidence 4678788761111223467788888899999999999998887654 45777788776 222222221 223444
Q ss_pred CCCCCeeeccCCcEEEEEE
Q 002194 510 PGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 510 ~~~~~~~~spdG~~l~~~~ 528 (954)
++||||++||+..+
T Consensus 232 -----iaFSp~~s~LavsS 245 (346)
T KOG2111|consen 232 -----IAFSPNSSWLAVSS 245 (346)
T ss_pred -----EEeCCCccEEEEEc
Confidence 89999999999987
|
|
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.31 Score=51.80 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh----C----CCcccEEEEeccCC
Q 002194 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH----A----PHLFCCGIARSGAY 794 (954)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~----~----p~~~~a~v~~~~~~ 794 (954)
.+-..++...+.+|.+...+ ++|.|+.||||.++++.++-+ . +..|+-+|..+|=.
T Consensus 171 ~~Sr~aLe~~lr~La~~~~~--~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDi 234 (377)
T COG4782 171 NYSRPALERLLRYLATDKPV--KRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDI 234 (377)
T ss_pred hhhHHHHHHHHHHHHhCCCC--ceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCC
Confidence 44567788899999887644 589999999999999987643 1 23567777777643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.31 Score=55.28 Aligned_cols=31 Identities=0% Similarity=-0.121 Sum_probs=21.4
Q ss_pred CceeEcCCCccccccccCCCCcEEEEEeecC
Q 002194 323 GTVKEIGPPAVYTSLDPSPDEKYILISSIHR 353 (954)
Q Consensus 323 G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~ 353 (954)
.++..+..+-.+.+..|+++|..|++..+..
T Consensus 250 ~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 250 PEPVVVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CCCeEEecccEeecceecCCCcEEEEccCcc
Confidence 3444444444566789999999999987553
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.69 Score=52.35 Aligned_cols=87 Identities=18% Similarity=0.377 Sum_probs=45.8
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
|..|...+.. .+.+||.+++ .++++... .+..+.||+||+.+++..
T Consensus 117 G~LL~~~~~~--------------~i~~yDw~~~~~i~~i~v~---------------~vk~V~Ws~~g~~val~t---- 163 (443)
T PF04053_consen 117 GNLLGVKSSD--------------FICFYDWETGKLIRRIDVS---------------AVKYVIWSDDGELVALVT---- 163 (443)
T ss_dssp SSSEEEEETT--------------EEEEE-TTT--EEEEESS----------------E-EEEEE-TTSSEEEEE-----
T ss_pred CcEEEEECCC--------------CEEEEEhhHcceeeEEecC---------------CCcEEEEECCCCEEEEEe----
Confidence 8888777622 5899999954 45555531 246789999999888871
Q ss_pred CCCccccccCCCeEEEEec--C-----CCCCC--CceEEeecccccCceeeccCCceEEEEE
Q 002194 422 GGDAKVEVTPRDIIYTQQA--E-----PVQGE--GPEILHKLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~--~-----~~~g~--~~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (954)
.+.+++++. + +.+|- ....+..-...+.+..|-.| .++|+.
T Consensus 164 ----------~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT 213 (443)
T PF04053_consen 164 ----------KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT 213 (443)
T ss_dssp ----------S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-
T ss_pred ----------CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc
Confidence 224555442 1 01111 12333333566777888665 666653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=93.15 E-value=3.2 Score=42.95 Aligned_cols=127 Identities=14% Similarity=0.175 Sum_probs=77.0
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCc-ccHHHHHHHHCCcEEEEc
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI-GSTSVLLWLARGFAILGG 718 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~G~~V~~~ 718 (954)
++..+++..| .++..++--+ +++.|++|-.|.=..... ..|... ....++.++.+ |.|..
T Consensus 23 ~e~~V~T~~G-~v~V~V~Gd~------~~~kpaiiTyhDlglN~~----------scFq~ff~~p~m~ei~~~-fcv~H- 83 (326)
T KOG2931|consen 23 QEHDVETAHG-VVHVTVYGDP------KGNKPAIITYHDLGLNHK----------SCFQGFFNFPDMAEILEH-FCVYH- 83 (326)
T ss_pred eeeeeccccc-cEEEEEecCC------CCCCceEEEecccccchH----------hHhHHhhcCHhHHHHHhh-eEEEe-
Confidence 4455665555 4777777422 113577888886311110 011111 12344556666 87777
Q ss_pred CCCCCCCC--CCcccchh----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEecc
Q 002194 719 PTTPIIGE--GDEEANDR----FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (954)
Q Consensus 719 ~~~~~~G~--G~~~~~~~----~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (954)
.+..|+ |....+.. ..+.+.+++..+++++ .-+-|.-+|.-+|+++-+..|..+|+++-++|++++
T Consensus 84 --V~~PGqe~gAp~~p~~y~yPsmd~LAd~l~~VL~~f------~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~ 155 (326)
T KOG2931|consen 84 --VDAPGQEDGAPSFPEGYPYPSMDDLADMLPEVLDHF------GLKSVIGMGVGAGAYILARFALNHPERVLGLVLINC 155 (326)
T ss_pred --cCCCccccCCccCCCCCCCCCHHHHHHHHHHHHHhc------CcceEEEecccccHHHHHHHHhcChhheeEEEEEec
Confidence 333443 21111222 2445666677776665 235689999999999999999999999999999986
Q ss_pred C
Q 002194 793 A 793 (954)
Q Consensus 793 ~ 793 (954)
.
T Consensus 156 ~ 156 (326)
T KOG2931|consen 156 D 156 (326)
T ss_pred C
Confidence 4
|
|
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.41 Score=50.66 Aligned_cols=117 Identities=21% Similarity=0.230 Sum_probs=70.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHC---C------cEEEEc
Q 002194 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR---G------FAILGG 718 (954)
Q Consensus 648 ~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~---G------~~V~~~ 718 (954)
.|.+|+-.-..|+.- ..++..+|++ ++||.|... + .|. .++..|... | |-|++
T Consensus 132 eGL~iHFlhvk~p~~-k~~k~v~PlL-l~HGwPGsv-------~----EFy----kfIPlLT~p~~hg~~~d~~FEVI~- 193 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQK-KKKKKVKPLL-LLHGWPGSV-------R----EFY----KFIPLLTDPKRHGNESDYAFEVIA- 193 (469)
T ss_pred cceeEEEEEecCCcc-ccCCcccceE-EecCCCchH-------H----HHH----hhhhhhcCccccCCccceeEEEec-
Confidence 688888887887653 3334456655 589986321 1 111 122233321 2 77888
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHH-HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEE
Q 002194 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVE-EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (954)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~av~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (954)
....|||.+.++...+-..++ ....+. .+...+ -++..|-|.-+|.-++..++..+|+.+.+.=
T Consensus 194 --PSlPGygwSd~~sk~GFn~~a-~ArvmrkLMlRLg---~nkffiqGgDwGSiI~snlasLyPenV~GlH 258 (469)
T KOG2565|consen 194 --PSLPGYGWSDAPSKTGFNAAA-TARVMRKLMLRLG---YNKFFIQGGDWGSIIGSNLASLYPENVLGLH 258 (469)
T ss_pred --cCCCCcccCcCCccCCccHHH-HHHHHHHHHHHhC---cceeEeecCchHHHHHHHHHhhcchhhhHhh
Confidence 456788888765433222111 112222 223333 4689999999999999999999998876653
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=5.4 Score=46.54 Aligned_cols=148 Identities=11% Similarity=0.116 Sum_probs=77.8
Q ss_pred eEEEEEeCCceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCcc
Q 002194 315 QLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIA 393 (954)
Q Consensus 315 ~l~~~~~~G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~ 393 (954)
.++.....+..+.+......+.|+|+++| ++....+..+ ..+..+..++. +....... ...
T Consensus 366 ~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~~-----------~~vv~~~~~g~~~~~~~~~~------~v~ 427 (573)
T PRK13614 366 TLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGGN-----------GRIVAYRPTGVAEGAQAPTV------TLT 427 (573)
T ss_pred EEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCCC-----------ceEEEEecCCCcccccccce------eec
Confidence 46655554555555555668899999998 6665542221 13333332221 11000000 000
Q ss_pred cccccc-CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-----ccccCceeeccCC
Q 002194 394 FNSVRK-GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-----DLRYGGISWCDDS 467 (954)
Q Consensus 394 ~~~~~~-g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-----~~~~~~~~~spDg 467 (954)
.....+ .+..+..|+||-+++..+.. ++..+|++-.+.-...+.++.|+.. ...+.+++|..++
T Consensus 428 ~~~l~g~~I~~lrvSrDG~R~Avi~~~----------~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~ 497 (573)
T PRK13614 428 ADWLAGRTVKELRVSREGVRALVISEQ----------NGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDS 497 (573)
T ss_pred ccccCCCeeEEEEECCCccEEEEEEEe----------CCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCC
Confidence 001112 25779999999999988432 2233455433211234555666432 2456778999998
Q ss_pred ceEEEEEeccccceEEEEEcCCCC
Q 002194 468 LALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
..++.....+ .+...+++.++++
T Consensus 498 sl~V~~~~~~-~~~~~~~v~v~~g 520 (573)
T PRK13614 498 TVVVTKASAT-SNVVPELLSVDAG 520 (573)
T ss_pred EEEEEeccCC-CcceEEEEEeCCC
Confidence 8666654333 2355677777554
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=3.3 Score=48.15 Aligned_cols=143 Identities=19% Similarity=0.087 Sum_probs=80.6
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
...++.|+||+.+|+... ...||+-... +..+.+..... +..+.|.++| .++.....
T Consensus 336 ~~s~avS~dg~~~A~v~~---------~~~l~vg~~~-~~~~~~~~~~~------Lt~PS~d~~g-~vWtv~~g------ 392 (557)
T PRK13615 336 ADAATLSADGRQAAVRNA---------SGVWSVGDGD-RDAVLLDTRPG------LVAPSLDAQG-YVWSTPAS------ 392 (557)
T ss_pred cccceEcCCCceEEEEcC---------CceEEEecCC-CcceeeccCCc------cccCcCcCCC-CEEEEeCC------
Confidence 367899999999999742 2366666533 45555544332 5688899998 67755110
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC----ccccccccCCCCcEE
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP----AVYTSLDPSPDEKYI 346 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~----~~~~~~~~SpDGk~l 346 (954)
....+.....+|+...+.-+ +.+..+.+|+||-++
T Consensus 393 -----------------------------------------~~~~l~~~~~~G~~~~v~v~~~~~~~I~~lrvSrDG~R~ 431 (557)
T PRK13615 393 -----------------------------------------DPRGLVAWGPDGVGHPVAVSWTATGRVVSLEVARDGARV 431 (557)
T ss_pred -----------------------------------------CceEEEEecCCCceEEeeccccCCCeeEEEEeCCCccEE
Confidence 00112222224444333222 468899999999999
Q ss_pred EEEeecCCcccccccCCCCcceEEEec--cCceEEEe-ccC-CCcccCCccccccccCccceeeccCCCCceEE
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTT--DGIFVREL-CDL-PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~--~g~~~~~l-~~~-~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~ 416 (954)
+....... ..+|++--+ +++..+.| +.. ... .....+.++.|..|++ |+..
T Consensus 432 Avi~~~~g----------~~~V~va~V~R~~~~P~~L~~~p~~l~--------~~l~~v~sl~W~~~~~-laVl 486 (557)
T PRK13615 432 LVQLETGA----------GPQLLVASIVRDGGVPTSLTTTPLELL--------ASPGTPLDATWVDELD-VATL 486 (557)
T ss_pred EEEEecCC----------CCEEEEEEEEeCCCcceEeeeccEEcc--------cCcCcceeeEEcCCCE-EEEE
Confidence 99864322 124554333 34444555 321 000 0112456789999888 4444
|
|
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.61 Score=52.76 Aligned_cols=151 Identities=13% Similarity=0.063 Sum_probs=79.3
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcc--------cHHHHHHHHC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIG--------STSVLLWLAR 711 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~la~~ 711 (954)
..+.+....+..+..+++.... ++. ..|+|+|+-|||.++.-......-+|.....-. ......|...
T Consensus 42 Gy~~v~~~~~~~lf~~f~es~~-~~~---~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~ 117 (437)
T PLN02209 42 GYIGIGEEENVQFFYYFIKSDK-NPQ---EDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKT 117 (437)
T ss_pred EEEEecCCCCeEEEEEEEecCC-CCC---CCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhc
Confidence 4455554456667777765432 222 379999999999776544333334443332110 0011133443
Q ss_pred CcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHHHHHHH-HcCCCCCCcEEEEeeChHHHHHHHHHHh----C----
Q 002194 712 GFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAVEEVV-RRGVAHPSKIAVGGHSYGAFMTANLLAH----A---- 780 (954)
Q Consensus 712 G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av~~l~-~~~~~d~~ri~l~G~S~GG~~a~~~a~~----~---- 780 (954)
- .++..+..-.+|+....... ..-....+|+..++.... ..+.....++.|+|.||||..+-.++.. .
T Consensus 118 a-nllfiDqPvGtGfSy~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~ 196 (437)
T PLN02209 118 A-NIIFLDQPVGSGFSYSKTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICC 196 (437)
T ss_pred C-cEEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhccccc
Confidence 3 34442322233433221111 111233466666665443 3444445689999999999866665532 1
Q ss_pred -C-CcccEEEEeccCCC
Q 002194 781 -P-HLFCCGIARSGAYN 795 (954)
Q Consensus 781 -p-~~~~a~v~~~~~~~ 795 (954)
+ =.++++++..|..+
T Consensus 197 ~~~inl~Gi~igng~td 213 (437)
T PLN02209 197 NPPINLQGYVLGNPITH 213 (437)
T ss_pred CCceeeeeEEecCcccC
Confidence 0 13678888888655
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.63 E-value=3.8 Score=48.26 Aligned_cols=107 Identities=13% Similarity=0.225 Sum_probs=62.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCc-eeeeecCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ-EIEIQGFPDG 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~-~~~lt~~~~~ 188 (954)
...++++|+||+.+|++..+ . ..+++-.+...++... .+.+. .+
T Consensus 364 ~~~s~avS~~g~~~A~v~~~-----------------------~---------~~l~vg~~~~~~~~~~~~~~~~---~~ 408 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISAD-----------------------G---------DSVYVGSLTPGASIGVHSWGVT---AD 408 (599)
T ss_pred CccceEEcCCCceEEEEcCC-----------------------C---------cEEEEeccCCCCccccccceee---cc
Confidence 45678999999999998653 0 2466655533221000 12221 23
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccc-cccceeEecCCeEEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNA-IFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~-~~~~~~wspDG~~l~~~ 261 (954)
.....|+|.++| +|... +. +.++..-|+++.. +|+...+.. + ++.+ .|..+.-|+||-++++.
T Consensus 409 ~~Lt~PS~d~~g-~vWtv-d~----~~~~~~vl~v~~~-~G~~~~V~~-~--~l~g~~I~~lrvSrDG~RvAvv 472 (599)
T PRK13613 409 GRLTSPSWDGRG-DLWVV-DR----DPADPRLLWLLQG-DGEPVEVRT-P--ELDGHRVVAVRVARDGVRVALI 472 (599)
T ss_pred CcccCCcCcCCC-CEEEe-cC----CCCCceEEEEEcC-CCcEEEeec-c--ccCCCEeEEEEECCCccEEEEE
Confidence 457889999998 65543 21 1222333666654 555544432 1 2222 47899999999999987
|
|
| >PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.35 Score=48.02 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=45.5
Q ss_pred cEEEEcCCCCCCCCCCc----ccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC
Q 002194 713 FAILGGPTTPIIGEGDE----EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~----~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~ 780 (954)
..|+++.|+-..-+... ..........+.|+.+|.++-+++.. +..+++|+|||.|+.+...++-..
T Consensus 46 ~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 46 CNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred CccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHH
Confidence 55666666544322211 11233455679999999998887742 235799999999999999998653
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.51 E-value=9.9 Score=44.29 Aligned_cols=134 Identities=10% Similarity=0.021 Sum_probs=73.9
Q ss_pred CCceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
.+..+.+........|+|+++| ++....+.. ...+.... .++...+.. +... ...
T Consensus 363 ~~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~-------------~~~l~~~~~~G~~~~v~v-~~~~---------~~~ 418 (557)
T PRK13615 363 DRDAVLLDTRPGLVAPSLDAQG-YVWSTPASD-------------PRGLVAWGPDGVGHPVAV-SWTA---------TGR 418 (557)
T ss_pred CCcceeeccCCccccCcCcCCC-CEEEEeCCC-------------ceEEEEecCCCceEEeec-cccC---------CCe
Confidence 4455555555668899999999 666554222 11122221 122222211 1111 123
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE-ee------cccccCceeeccCCceEEEE
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HK------LDLRYGGISWCDDSLALVYE 473 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~------~~~~~~~~~~spDg~~l~~~ 473 (954)
+..+..|+||-+++..++. .+.++|++-.+.- +++.++.| +. ....+.++.|..|++.++..
T Consensus 419 I~~lrvSrDG~R~Avi~~~----------~g~~~V~va~V~R-~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 419 VVSLEVARDGARVLVQLET----------GAGPQLLVASIVR-DGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred eEEEEeCCCccEEEEEEec----------CCCCEEEEEEEEe-CCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEe
Confidence 5678999999999998543 2234565544311 34444455 32 22356678999998866665
Q ss_pred EeccccceEEEEEcCCCC
Q 002194 474 SWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 474 ~~~~~~~~~l~~~d~~~~ 491 (954)
.... ....++++.++++
T Consensus 488 ~~~~-~~~~v~~v~v~g~ 504 (557)
T PRK13615 488 LAPD-GERQVELHQVGGP 504 (557)
T ss_pred ccCC-CCceEEEEECCCc
Confidence 3322 2356788888764
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.49 E-value=20 Score=39.70 Aligned_cols=160 Identities=18% Similarity=0.155 Sum_probs=80.2
Q ss_pred EEEEEe-C-C-ceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccC
Q 002194 316 LVLVSL-D-G-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDI 390 (954)
Q Consensus 316 l~~~~~-~-G-~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~ 390 (954)
+..++. . + ....+... ..+..+.|+|+++.++.... ....+.+|++..+ ....+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~------- 196 (466)
T COG2319 136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS------------LDGTIKLWDLRTGKPLSTLAG------- 196 (466)
T ss_pred EEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC------------CCCceEEEEcCCCceEEeecc-------
Confidence 445555 3 2 33334333 66678999999996666542 1237889998853 3333332
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceE--EeecccccCceeeccCCc
Q 002194 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI--LHKLDLRYGGISWCDDSL 468 (954)
Q Consensus 391 p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~--l~~~~~~~~~~~~spDg~ 468 (954)
....+..++|+|+++. ++.. . +....+.+|+. ..+.... +..+.... ...|+|++.
T Consensus 197 ------~~~~v~~~~~~~~~~~-~~~~-~----------~~d~~i~~wd~---~~~~~~~~~~~~~~~~~-~~~~~~~~~ 254 (466)
T COG2319 197 ------HTDPVSSLAFSPDGGL-LIAS-G----------SSDGTIRLWDL---STGKLLRSTLSGHSDSV-VSSFSPDGS 254 (466)
T ss_pred ------CCCceEEEEEcCCcce-EEEE-e----------cCCCcEEEEEC---CCCcEEeeecCCCCcce-eEeECCCCC
Confidence 1134567889999982 2221 0 12334556664 2222222 22222221 227999996
Q ss_pred eEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEE
Q 002194 469 ALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (954)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 527 (954)
.++... .++ ..++|.+.... ........+...+.. +.|+|++..++..
T Consensus 255 ~~~~~~-~d~-~~~~~~~~~~~---~~~~~~~~~~~~v~~------~~~~~~~~~~~~~ 302 (466)
T COG2319 255 LLASGS-SDG-TIRLWDLRSSS---SLLRTLSGHSSSVLS------VAFSPDGKLLASG 302 (466)
T ss_pred EEEEec-CCC-cEEEeeecCCC---cEEEEEecCCccEEE------EEECCCCCEEEEe
Confidence 555332 222 24555544333 112222222222222 5688888777663
|
|
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.3 Score=45.85 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 002194 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (954)
Q Consensus 738 ~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 779 (954)
.....+...++.+.++.. +.+|.++|||+||.+|..++..
T Consensus 45 ~~~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 45 SLYDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 344556666666665543 3689999999999999988875
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.42 E-value=24 Score=41.14 Aligned_cols=104 Identities=10% Similarity=0.046 Sum_probs=56.7
Q ss_pred cCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec---ccccCceeeccCCceEEEEEe
Q 002194 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL---DLRYGGISWCDDSLALVYESW 475 (954)
Q Consensus 399 ~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~---~~~~~~~~~spDg~~l~~~~~ 475 (954)
+.+..+.++|=+..++.. .++-.+.+|.- +-....+... ...+..++|||---.+++..+
T Consensus 399 g~v~~v~~nPF~~k~fls-------------~gDW~vriWs~----~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLS-------------VGDWTVRIWSE----DVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred cceEeeecCCCccceeee-------------eccceeEeccc----cCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 345667888877765544 12224555542 2122334322 223677999999888888776
Q ss_pred ccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 476 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.++ +..||.+-.+. ..|...-... .+..+.+.|++.|+.|+...
T Consensus 462 ~~G-~l~iWDLl~~~--~~Pv~s~~~~------~~~l~~~~~s~~g~~lavGd 505 (555)
T KOG1587|consen 462 GDG-NLDIWDLLQDD--EEPVLSQKVC------SPALTRVRWSPNGKLLAVGD 505 (555)
T ss_pred CCC-ceehhhhhccc--cCCccccccc------ccccceeecCCCCcEEEEec
Confidence 654 24455444333 2333221111 11223378999999988876
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.41 E-value=18 Score=44.36 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=37.2
Q ss_pred eecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEe
Q 002194 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (954)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (954)
..|||.+.+++..+.....-.......++.+..++. .......+. ..+..+.|+|.|+.++|+.
T Consensus 103 ~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~wsp~~~~l~yv~ 166 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGE-KLHPPEYEG---SKIQYASWSPLGNDLAYVL 166 (755)
T ss_pred ccChhhhhheeccCcccccceeeEEEEEEEEcCCCC-cccCcccCC---CeeEEEEEcCCCCEEEEEE
Confidence 778999999997653211112223445666666665 111111111 1145788999998888873
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.29 E-value=4.5 Score=43.64 Aligned_cols=121 Identities=14% Similarity=0.110 Sum_probs=75.5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
+....++...|.-|+.+ |.-.-||.++.+++.+..++...++.--...+.+...++| .|+|+....
T Consensus 116 RPLGl~f~~~ggdL~Va---------DAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g-~vyFTDSSs---- 181 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVA---------DAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEG-VVYFTDSSS---- 181 (376)
T ss_pred CcceEEeccCCCeEEEE---------ecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCC-eEEEecccc----
Confidence 45567888888666553 2467899999999998888765443211113466677755 566661100
Q ss_pred CCCCCCCCCCceeeccCCceeeech-hhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRT-FQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~-~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l 346 (954)
.++.|. ..+.+..+ ..++++++|. +...+.|-.+ ....+++.|||+.++
T Consensus 182 -------------------k~~~rd~~~a~l~g~---------~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfv 233 (376)
T KOG1520|consen 182 -------------------KYDRRDFVFAALEGD---------PTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFV 233 (376)
T ss_pred -------------------ccchhheEEeeecCC---------CccceEEecCcccchhhhhhcccccccccCCCCCCEE
Confidence 011111 01111111 3467899998 7777777776 777889999999999
Q ss_pred EEEeec
Q 002194 347 LISSIH 352 (954)
Q Consensus 347 ~~~s~~ 352 (954)
++....
T Consensus 234 l~~Et~ 239 (376)
T KOG1520|consen 234 LVAETT 239 (376)
T ss_pred EEEeec
Confidence 998743
|
|
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.43 Score=45.67 Aligned_cols=52 Identities=15% Similarity=0.053 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC----cccEEEEecc
Q 002194 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGIARSG 792 (954)
Q Consensus 739 ~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~~ 792 (954)
....+...++....+ ....+|.++|||+||.+|..++..... ....+++.++
T Consensus 10 ~~~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~ 65 (153)
T cd00741 10 LANLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGP 65 (153)
T ss_pred HHHHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCC
Confidence 344444444444433 234689999999999999998876543 3344444444
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.13 E-value=5.4 Score=44.45 Aligned_cols=34 Identities=6% Similarity=-0.049 Sum_probs=25.1
Q ss_pred ceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEE
Q 002194 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (954)
Q Consensus 314 ~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~ 347 (954)
..|++++. +++.+.+..+ .....++|+|+|+.++
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~ 199 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFF 199 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCCCccceECCCCCEEE
Confidence 46999999 5566666655 5567899999997743
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.98 E-value=3.6 Score=45.83 Aligned_cols=66 Identities=9% Similarity=0.002 Sum_probs=39.1
Q ss_pred ccceeeccCCCCceEEEEeccCCC---c----cccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceE
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGD---A----KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l 470 (954)
...+.|.|||+ |++......+.. . .......+.++.++. ++++.+.+..+-.....++|+|+|+.+
T Consensus 126 ~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p---dg~~~e~~a~G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 126 LNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP---DGGKLRVVAHGFQNPYGHSVDSWGDVF 198 (367)
T ss_pred ccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEec---CCCeEEEEecCcCCCccceECCCCCEE
Confidence 45789999996 444322110000 0 001122357888885 666677776665566789999998754
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.90 E-value=12 Score=38.86 Aligned_cols=71 Identities=14% Similarity=0.259 Sum_probs=44.5
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeec-C-CCC
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQG-F-PDG 188 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~-~-~~~ 188 (954)
+..++|.+-|+++|..+.+ ..+.||+...+. +. ..+|. - .++
T Consensus 16 ihdVs~D~~GRRmAtCSsD---------------------------------q~vkI~d~~~~s--~~-W~~Ts~Wrah~ 59 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSD---------------------------------QTVKIWDSTSDS--GT-WSCTSSWRAHD 59 (361)
T ss_pred eeeeeecccCceeeeccCC---------------------------------CcEEEEeccCCC--Cc-eEEeeeEEecC
Confidence 4568899999999998876 478888864322 22 22221 0 133
Q ss_pred CcccceeecC--CCCeEEEEEeeccccCCCCceEEEEE
Q 002194 189 AKLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVA 224 (954)
Q Consensus 189 ~~~~~~~wSP--DG~~iaf~~~~~~~~~~~~~~~l~~~ 224 (954)
+.+-.+.|.+ =|+-||.++. +....||-=
T Consensus 60 ~Si~rV~WAhPEfGqvvA~cS~-------Drtv~iWEE 90 (361)
T KOG2445|consen 60 GSIWRVVWAHPEFGQVVATCSY-------DRTVSIWEE 90 (361)
T ss_pred CcEEEEEecCccccceEEEEec-------CCceeeeee
Confidence 4677788865 5788888763 335566643
|
|
| >TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2 | Back alignment and domain information |
|---|
Probab=91.79 E-value=10 Score=42.34 Aligned_cols=144 Identities=14% Similarity=0.151 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC--------CCCCcc
Q 002194 734 RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT--------PFGFQN 805 (954)
Q Consensus 734 ~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~--------~~~~~~ 805 (954)
.+-....+=+..++++| ..+.+.+.+.|.|||-+-|+..++.-. -.|+|..-|+.+.... +-.|..
T Consensus 336 eyE~~I~~~I~~~L~~L----gF~~~qLILSGlSMGTfgAlYYga~l~--P~AIiVgKPL~NLGtiA~n~rL~RP~~F~T 409 (511)
T TIGR03712 336 EYEQGIINVIQEKLDYL----GFDHDQLILSGLSMGTFGALYYGAKLS--PHAIIVGKPLVNLGTIASRMRLDRPDEFGT 409 (511)
T ss_pred HHHHHHHHHHHHHHHHh----CCCHHHeeeccccccchhhhhhcccCC--CceEEEcCcccchhhhhccccccCCCCCch
Confidence 34333444444444444 357789999999999999999998752 3677777787664321 111111
Q ss_pred c--------cchhhhc----HHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002194 806 E--------DRTLWEA----TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (954)
Q Consensus 806 ~--------~~~~~~~----~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (954)
. ...-.++ .+.+++ -+.+.+--++.+.+..=.+|..- ...-.++...|...++++--.-+||
T Consensus 410 slDvl~~~~g~~s~~~i~~ln~~fW~--~f~~~d~S~T~F~i~YM~~DDYD---~~A~~~L~~~l~~~~~~v~~kG~~G- 483 (511)
T TIGR03712 410 ALDILLLNTGGTSSEDVVKLDNRFWK--KFKKSDLSKTTFAIAYMKNDDYD---PTAFQDLLPYLSKQGAQVMSKGIPG- 483 (511)
T ss_pred HHHhHHhhcCCCCHHHHHHHHHHHHH--HHhhcCcccceEEEEeeccccCC---HHHHHHHHHHHHhcCCEEEecCCCC-
Confidence 0 0000000 011111 11222222455555555555543 3455678888887777665555665
Q ss_pred CCcCCCcccHHHHHHHHHHHHHHh
Q 002194 874 SHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 874 ~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
.|.-. ...|..||-.+
T Consensus 484 RHNDd--------s~~i~~WF~n~ 499 (511)
T TIGR03712 484 RHNDD--------SPTVNSWFINF 499 (511)
T ss_pred CCCCC--------chHHHHHHHHH
Confidence 56532 13456666544
|
This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.17 Score=51.72 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=18.6
Q ss_pred CCcEEEEeeChHHHHHHHHHHh
Q 002194 758 PSKIAVGGHSYGAFMTANLLAH 779 (954)
Q Consensus 758 ~~ri~l~G~S~GG~~a~~~a~~ 779 (954)
..+|.++|||+||.++-.++..
T Consensus 77 ~~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred cccceEEEecccHHHHHHHHHH
Confidence 3589999999999999877663
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.52 Score=51.04 Aligned_cols=191 Identities=9% Similarity=0.072 Sum_probs=110.1
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
......++-+|++|++.. -..+|-.+|-.++....=....+ .+.++.|-.+.++++++
T Consensus 131 GPY~~~ytrnGrhlllgG---------rKGHlAa~Dw~t~~L~~Ei~v~E-----tv~Dv~~LHneq~~AVA-------- 188 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGG---------RKGHLAAFDWVTKKLHFEINVME-----TVRDVTFLHNEQFFAVA-------- 188 (545)
T ss_pred CCeeeeecCCccEEEecC---------Cccceeeeecccceeeeeeehhh-----hhhhhhhhcchHHHHhh--------
Confidence 356678899999999943 35677777766665532222222 26788898888888766
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCC-ceeEcCCCccccccccCCCCcEEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEIGPPAVYTSLDPSPDEKYILI 348 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G-~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (954)
....+|+||-.| +..-|-....+....|-|-- +|+.
T Consensus 189 ------------------------------------------QK~y~yvYD~~GtElHClk~~~~v~rLeFLPyH-fLL~ 225 (545)
T KOG1272|consen 189 ------------------------------------------QKKYVYVYDNNGTELHCLKRHIRVARLEFLPYH-FLLV 225 (545)
T ss_pred ------------------------------------------hhceEEEecCCCcEEeehhhcCchhhhcccchh-heee
Confidence 334588888855 56666555667778888864 4444
Q ss_pred EeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
+.+..+ -+...|+..++ +..+....+.. ..+.=.|-.. ++-. |
T Consensus 226 ~~~~~G------------~L~Y~DVS~GklVa~~~t~~G~~-------------~vm~qNP~Na-Vih~-----G----- 269 (545)
T KOG1272|consen 226 AASEAG------------FLKYQDVSTGKLVASIRTGAGRT-------------DVMKQNPYNA-VIHL-----G----- 269 (545)
T ss_pred ecccCC------------ceEEEeechhhhhHHHHccCCcc-------------chhhcCCccc-eEEE-----c-----
Confidence 443322 44555666433 22222211110 0111111110 1111 0
Q ss_pred cccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
..++.|-+|. |........+..+.+.+.++++.++|++++.+.-+. ...||.+.
T Consensus 270 --hsnGtVSlWS--P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr--~~kIWDlR 323 (545)
T KOG1272|consen 270 --HSNGTVSLWS--PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDR--KVKIWDLR 323 (545)
T ss_pred --CCCceEEecC--CCCcchHHHHHhcCCCcceEEECCCCcEEeeccccc--ceeEeeec
Confidence 2245666776 233333345566788899999999999999875443 25566554
|
|
| >smart00824 PKS_TE Thioesterase | Back alignment and domain information |
|---|
Probab=91.32 E-value=2.2 Score=42.85 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=25.9
Q ss_pred CCcEEEEeeChHHHHHHHHHHh---CCCcccEEEEecc
Q 002194 758 PSKIAVGGHSYGAFMTANLLAH---APHLFCCGIARSG 792 (954)
Q Consensus 758 ~~ri~l~G~S~GG~~a~~~a~~---~p~~~~a~v~~~~ 792 (954)
..++.++|||+||.++..++.+ .+..+..++.+.+
T Consensus 63 ~~~~~l~g~s~Gg~~a~~~a~~l~~~~~~~~~l~~~~~ 100 (212)
T smart00824 63 GRPFVLVGHSSGGLLAHAVAARLEARGIPPAAVVLLDT 100 (212)
T ss_pred CCCeEEEEECHHHHHHHHHHHHHHhCCCCCcEEEEEcc
Confidence 3578999999999999888775 3345666665543
|
Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa. |
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.91 Score=51.40 Aligned_cols=150 Identities=14% Similarity=0.068 Sum_probs=76.4
Q ss_pred EEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCC-----C---cccHHHHHHHHCC
Q 002194 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFP-----R---IGSTSVLLWLARG 712 (954)
Q Consensus 641 ~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~la~~G 712 (954)
.+++....+..+..|++.... ++. ..|+|+|+-|||.++.-......-+|.... . .-....-.|....
T Consensus 41 y~~v~~~~~~~lfy~f~es~~-~~~---~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~a 116 (433)
T PLN03016 41 YIGIGEDENVQFFYYFIKSEN-NPK---EDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMA 116 (433)
T ss_pred EEEecCCCCeEEEEEEEecCC-Ccc---cCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhcC
Confidence 344443445677777775432 222 379999999998776533223333332211 0 0000112334433
Q ss_pred cEEEEcCCCCCCCCCCcccchhhH--HHHHHHHHHHHHH-HHHcCCCCCCcEEEEeeChHHHHHHHHHHh----C-----
Q 002194 713 FAILGGPTTPIIGEGDEEANDRFV--EQLVACAEAAVEE-VVRRGVAHPSKIAVGGHSYGAFMTANLLAH----A----- 780 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~~--~~~~~D~~~av~~-l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~----~----- 780 (954)
- ++..+..-.+|+.......... ....+|+..++.. +...+..-..++.|+|.||||..+-.+|.. .
T Consensus 117 n-llfiDqPvGtGfSy~~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~ 195 (433)
T PLN03016 117 N-IIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCE 195 (433)
T ss_pred c-EEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccC
Confidence 3 3332322223332211111110 1223566655553 344454455689999999999876665542 1
Q ss_pred -CCcccEEEEeccCCC
Q 002194 781 -PHLFCCGIARSGAYN 795 (954)
Q Consensus 781 -p~~~~a~v~~~~~~~ 795 (954)
+=.++++++..|..+
T Consensus 196 ~~inLkGi~iGNg~t~ 211 (433)
T PLN03016 196 PPINLQGYMLGNPVTY 211 (433)
T ss_pred CcccceeeEecCCCcC
Confidence 114788888888655
|
|
| >KOG1551 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.03 E-value=1.2 Score=44.93 Aligned_cols=66 Identities=17% Similarity=0.086 Sum_probs=38.4
Q ss_pred ccCCCCCC-----EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 825 SANKLKKP-----ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 825 ~~~~~~~P-----~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
.+.+..+| +.++.+++|..+| -.....+.+.. .|..+++ .+ .||.-...-....+.+.|.+-|++.
T Consensus 296 ~v~~fp~Pvdpsl~ivv~A~~D~Yip--r~gv~~lQ~~W--Pg~eVr~--~e-gGHVsayl~k~dlfRR~I~d~L~R~ 366 (371)
T KOG1551|consen 296 HVANFPVPVDPSLIIVVQAKEDAYIP--RTGVRSLQEIW--PGCEVRY--LE-GGHVSAYLFKQDLFRRAIVDGLDRL 366 (371)
T ss_pred hhhcCCCCCCCCeEEEEEecCCcccc--ccCcHHHHHhC--CCCEEEE--ee-cCceeeeehhchHHHHHHHHHHHhh
Confidence 44454444 5667799999987 53334443332 3555554 44 4897543333455666788877764
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=91.01 E-value=6 Score=45.02 Aligned_cols=57 Identities=7% Similarity=0.103 Sum_probs=35.7
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT 228 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~ 228 (954)
..+..|++++.+-.|. +...+ +...+....|+|+..-+..+ +.+++..-||.+...+
T Consensus 122 sT~r~Wdvk~s~l~G~-~~~~G--H~~SvkS~cf~~~n~~vF~t------GgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGG-RLNLG--HTGSVKSECFMPTNPAVFCT------GGRDGEILLWDCRCNG 178 (720)
T ss_pred ceeeeeeeccceeecc-eeecc--cccccchhhhccCCCcceee------ccCCCcEEEEEEeccc
Confidence 5789999975321111 11222 22467888999998755443 4567888888877665
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=90.77 E-value=2.9 Score=44.80 Aligned_cols=39 Identities=8% Similarity=-0.106 Sum_probs=26.4
Q ss_pred CCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 446 EGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
+..+.+..+--.+..++||||++.|.++. ++. +|++...
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaD-RDE---kIRvs~y 180 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITAD-RDE---KIRVSRY 180 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEec-CCc---eEEEEec
Confidence 45556666666778899999999888874 332 3555443
|
|
| >KOG2521 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.57 E-value=6.1 Score=42.77 Aligned_cols=70 Identities=14% Similarity=0.085 Sum_probs=59.8
Q ss_pred CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcccC
Q 002194 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (954)
..+.|.+.+..|.++| ..+.+++.+..+..|..++-+-+.+..|.-........+.+...+|+.......
T Consensus 225 ~~~~ly~~s~~d~v~~--~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~~~~~ 294 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLP--ADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSVISSY 294 (350)
T ss_pred cccceeecCCcccccc--HHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhccccc
Confidence 4678888899999998 889999989999999999999999999987656667788899999999876543
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.38 E-value=9.5 Score=38.82 Aligned_cols=116 Identities=13% Similarity=0.035 Sum_probs=65.1
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce--EEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
..+..+|+|++|++.+.... +++.|.++... ...++.-+.. .+....+||....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~-------------~Vf~y~id~~sey~~~~~~a~t~-----------D~gF~~S~s~~~~ 216 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSR-------------RVFRYAIDDESEYIENIYEAPTS-----------DHGFYNSFSENDL 216 (344)
T ss_pred eeeeEEcCCCceEEEecCCC-------------cceEEEeCCccceeeeeEecccC-----------CCceeeeeccCcc
Confidence 56788999999999887433 78888887432 2222211111 1223456776665
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEE----eecccccCceeeccCCce-EEEEEeccccceEEEE
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EIL----HKLDLRYGGISWCDDSLA-LVYESWYKTRRTRTWV 485 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l----~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~~l~~ 485 (954)
..+.. .+ .+.+-+||+ ..-+.+ ... ..+.+.+....||+-|-. |+|-++ +.+++.+
T Consensus 217 ~FAv~--~Q-----------dg~~~I~DV--R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv 278 (344)
T KOG4532|consen 217 QFAVV--FQ-----------DGTCAIYDV--RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHV 278 (344)
T ss_pred eEEEE--ec-----------CCcEEEEEe--cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec---CcceEEE
Confidence 44443 33 334555554 111111 111 235677788899986643 444432 3467888
Q ss_pred EcCCCC
Q 002194 486 ISPGSK 491 (954)
Q Consensus 486 ~d~~~~ 491 (954)
+|+.++
T Consensus 279 ~D~R~~ 284 (344)
T KOG4532|consen 279 VDTRNY 284 (344)
T ss_pred EEcccC
Confidence 998876
|
|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.38 E-value=17 Score=42.74 Aligned_cols=84 Identities=13% Similarity=0.048 Sum_probs=52.7
Q ss_pred CCeEEEEecCCCCCCCceEEeec-ccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCC
Q 002194 432 RDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510 (954)
Q Consensus 432 ~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~ 510 (954)
.++|-+..+ +|.+.+.|... -....++...+=++.|+|+.|... +-.|-..++++. +.+++.+.......+
T Consensus 1089 lD~IevA~L---dG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRe-nPkIets~mDG~--NrRilin~DigLPNG-- 1160 (1289)
T KOG1214|consen 1089 LDKIEVALL---DGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRE-NPKIETSSMDGE--NRRILINTDIGLPNG-- 1160 (1289)
T ss_pred cchhheeec---CCceeeEEEeecccCcceEEeecccCceeecccccc-CCcceeeccCCc--cceEEeecccCCCCC--
Confidence 345555543 77777777443 345577888888899999988654 366888888885 556665554433222
Q ss_pred CCCCeeeccCCcEEEEE
Q 002194 511 GSPMMRRTSTGTYVIAK 527 (954)
Q Consensus 511 ~~~~~~~spdG~~l~~~ 527 (954)
+.|.|..+.|-|.
T Consensus 1161 ----Ltfdpfs~~LCWv 1173 (1289)
T KOG1214|consen 1161 ----LTFDPFSKLLCWV 1173 (1289)
T ss_pred ----ceeCcccceeeEE
Confidence 4555555554444
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=90.33 E-value=5.1 Score=43.02 Aligned_cols=38 Identities=8% Similarity=0.288 Sum_probs=23.2
Q ss_pred eEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 219 LRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 219 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
.++.++.++.+..+.+.-+-.. +..++||||+++|.++
T Consensus 132 ~~~di~s~~~~~~~~~lGhvSm-----l~dVavS~D~~~Iita 169 (390)
T KOG3914|consen 132 YSFDILSADSGRCEPILGHVSM-----LLDVAVSPDDQFIITA 169 (390)
T ss_pred eeeeeecccccCcchhhhhhhh-----hheeeecCCCCEEEEe
Confidence 3444444444555544332222 5689999999999876
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=90.19 E-value=15 Score=41.76 Aligned_cols=141 Identities=12% Similarity=0.103 Sum_probs=80.6
Q ss_pred ceEEEEEe-CCceeEcCC---CccccccccCCCCcEEEEEeecC-CcccccccCCCCcceEEEeccCceEEEeccCCCcc
Q 002194 314 TQLVLVSL-DGTVKEIGP---PAVYTSLDPSPDEKYILISSIHR-PYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE 388 (954)
Q Consensus 314 ~~l~~~~~-~G~~~~l~~---~~~~~~~~~SpDGk~l~~~s~~~-~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~ 388 (954)
.+|.++.. .++...+.- ......+.||-...+.+++-... +. .++..-+..+|+...++.+++.....
T Consensus 184 aNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~-----~g~~~~d~ciYE~~r~klqrvsvtsi-- 256 (545)
T PF11768_consen 184 ANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISV-----KGEPSADSCIYECSRNKLQRVSVTSI-- 256 (545)
T ss_pred ccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCC-----CCCceeEEEEEEeecCceeEEEEEEE--
Confidence 45777777 445444432 13334566666444444432211 10 01112255677777666655432111
Q ss_pred cCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCc
Q 002194 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSL 468 (954)
Q Consensus 389 ~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~ 468 (954)
| ....+...+++|+.++++.- -..+.|.+||. ......++........++|.|||.
T Consensus 257 --p-----L~s~v~~ca~sp~E~kLvlG-------------C~DgSiiLyD~----~~~~t~~~ka~~~P~~iaWHp~ga 312 (545)
T PF11768_consen 257 --P-----LPSQVICCARSPSEDKLVLG-------------CEDGSIILYDT----TRGVTLLAKAEFIPTLIAWHPDGA 312 (545)
T ss_pred --e-----cCCcceEEecCcccceEEEE-------------ecCCeEEEEEc----CCCeeeeeeecccceEEEEcCCCc
Confidence 1 12345678999999988876 23557889984 334555666666778899999999
Q ss_pred eEEEEEeccccceEEEEEcCC
Q 002194 469 ALVYESWYKTRRTRTWVISPG 489 (954)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~d~~ 489 (954)
.++..+.. ++|..+|..
T Consensus 313 i~~V~s~q----GelQ~FD~A 329 (545)
T PF11768_consen 313 IFVVGSEQ----GELQCFDMA 329 (545)
T ss_pred EEEEEcCC----ceEEEEEee
Confidence 88877543 345555544
|
|
| >KOG3975 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.18 E-value=9.1 Score=38.70 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=30.6
Q ss_pred CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 002194 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
..-+-+..|+.|.-|| ......+-+.+.+ .++++.. .+..|.|-
T Consensus 242 ~d~l~Fyygt~DgW~p--~~~~d~~kdd~~e--ed~~Lde-dki~HAFV 285 (301)
T KOG3975|consen 242 LDSLWFYYGTNDGWVP--SHYYDYYKDDVPE--EDLKLDE-DKIPHAFV 285 (301)
T ss_pred CcEEEEEccCCCCCcc--hHHHHHHhhhcch--hceeecc-ccCCccee
Confidence 4668888999999998 6665555555443 3456655 66789874
|
|
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.90 E-value=2.8 Score=47.28 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=81.2
Q ss_pred EEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCccc---HHHHHHHHCCcEEEE
Q 002194 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS---TSVLLWLARGFAILG 717 (954)
Q Consensus 641 ~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~la~~G~~V~~ 717 (954)
-+.+....+..+..|++.-.. .|.. -|+|||+-|||.++.-.+....-+|-....-+. ...-.|.... .++.
T Consensus 48 Yv~v~~~~~~~LFYwf~eS~~-~P~~---dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~a-NiLf 122 (454)
T KOG1282|consen 48 YVTVNESEGRQLFYWFFESEN-NPET---DPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEA-NILF 122 (454)
T ss_pred eEECCCCCCceEEEEEEEccC-CCCC---CCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccc-cEEE
Confidence 455655678889988885432 2333 699999999998876554443444422221111 0000122222 2222
Q ss_pred cCCCCCCCCCCcccch---hhHHHHHHHHHHHH-HHHHHcCCCCCCcEEEEeeChHHHHHHHHH----HhC-----C-Cc
Q 002194 718 GPTTPIIGEGDEEAND---RFVEQLVACAEAAV-EEVVRRGVAHPSKIAVGGHSYGAFMTANLL----AHA-----P-HL 783 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av-~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a----~~~-----p-~~ 783 (954)
.+-.-.+|+..+.... .--....+|...++ +|+.+.+..-.+.+.|+|-||+|..+-.+| ..+ | =-
T Consensus 123 Ld~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iN 202 (454)
T KOG1282|consen 123 LDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNIN 202 (454)
T ss_pred EecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCccc
Confidence 1111122332221111 11123345554444 577777776677899999999996554444 332 1 14
Q ss_pred ccEEEEeccCCC
Q 002194 784 FCCGIARSGAYN 795 (954)
Q Consensus 784 ~~a~v~~~~~~~ 795 (954)
+++.+...|+.|
T Consensus 203 LkG~~IGNg~td 214 (454)
T KOG1282|consen 203 LKGYAIGNGLTD 214 (454)
T ss_pred ceEEEecCcccC
Confidence 789999888765
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.82 E-value=34 Score=40.25 Aligned_cols=66 Identities=8% Similarity=-0.073 Sum_probs=35.1
Q ss_pred ceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEeecccccCceeeccCCce-EEEEEeccccc
Q 002194 403 SINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLA-LVYESWYKTRR 480 (954)
Q Consensus 403 ~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spDg~~-l~~~~~~~~~~ 480 (954)
.++|+|--+.++|..- ...++++|+ +-... ..+.-..+....+.|-||+++ .+|..-.+++
T Consensus 235 ~faf~p~~rn~lfi~~-------------prellv~dl---e~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~- 297 (1062)
T KOG1912|consen 235 QFAFSPHWRNILFITF-------------PRELLVFDL---EYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGR- 297 (1062)
T ss_pred hhhcChhhhceEEEEe-------------ccceEEEcc---hhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCe-
Confidence 4788998888888721 235777775 22221 111112233445778888765 4454433332
Q ss_pred eEEEE
Q 002194 481 TRTWV 485 (954)
Q Consensus 481 ~~l~~ 485 (954)
..||+
T Consensus 298 ltirv 302 (1062)
T KOG1912|consen 298 LTIRV 302 (1062)
T ss_pred EEEEE
Confidence 34444
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=89.61 E-value=0.45 Score=54.55 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=52.6
Q ss_pred CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC--C------cEEEEEeCCCCCcCCCc-ccHHHHHHHHHHHHHHh
Q 002194 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG--A------LCRLVILPFESHGYAAR-ESIMHVLWETDRWLQKY 897 (954)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g--~------~~~~~~~~~~~H~~~~~-~~~~~~~~~i~~fl~~~ 897 (954)
...+|+.||..|..|| +..+.++|+++...- . =++|...||++|..... ....+.+..+.+|.++=
T Consensus 353 GGKLI~~HG~aD~~I~--p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~G 427 (474)
T PF07519_consen 353 GGKLILYHGWADPLIP--PQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVENG 427 (474)
T ss_pred CCeEEEEecCCCCccC--CCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhCC
Confidence 4689999999999999 999999999987652 1 36899999999987544 23446778888888763
|
It also includes several bacterial homologues of unknown function. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 954 | ||||
| 2ecf_A | 741 | Crystal Structure Of Dipeptidyl Aminopeptidase Iv F | 6e-08 | ||
| 2gbc_A | 730 | Native Dpp-Iv (Cd26) From Rat Length = 730 | 1e-04 | ||
| 3o4j_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 4e-04 |
| >pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From Stenotrophomonas Maltophilia Length = 741 | Back alignment and structure |
|
| >pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat Length = 730 | Back alignment and structure |
|
| >pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 954 | |||
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 5e-32 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 4e-31 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 1e-25 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 5e-24 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 1e-20 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 3e-20 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 1e-19 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 3e-19 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 2e-18 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 2e-18 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 3e-17 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 7e-14 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 2e-12 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 4e-12 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 3e-11 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 4e-11 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 2e-10 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 3e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-10 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 9e-10 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 1e-09 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 2e-09 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 5e-09 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 1e-07 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 1e-07 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 2e-07 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 2e-07 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 2e-07 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 3e-07 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 2e-06 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 2e-06 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 3e-06 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 7e-06 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 8e-06 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 2e-05 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 2e-05 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 3e-05 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 5e-05 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 9e-05 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 1e-04 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 1e-04 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 2e-04 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 3e-04 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 4e-04 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 6e-04 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 8e-04 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 9e-04 |
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 5e-32
Identities = 58/315 (18%), Positives = 100/315 (31%), Gaps = 47/315 (14%)
Query: 606 TENTQYYIQSWPDKKSCQITDFPHPYPQLASLQK-ELIKYQRKDGVQLSATLYLPPG--Y 662
+ ++ I A + ++ + DG ++ A +Y P +
Sbjct: 357 RTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIYPPHSPDF 416
Query: 663 DPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL----GG 718
D P + ++ G R + + +RG + GG
Sbjct: 417 TGPADELPPYVVMAHGG--------PTSRVPAVLDLDV-----AYFTSRGIGVADVNYGG 463
Query: 719 PTTPIIGEGDE--EANDRF-----VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAF 771
T G G E VE A A A E G A +++AV G S G +
Sbjct: 464 ST----GYGRAYRERLRGRWGVVDVEDCAAVATALAE----EGTADRARLAVRGGSAGGW 515
Query: 772 MTANLLAHAPHLFCCGIARSGAYN---------RTLTPFGFQNEDRTLWEATSTYVEMSP 822
A+ L ++ CG + + E Y + +P
Sbjct: 516 TAASSLVS-TDVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSFEEFPERYRDRAP 574
Query: 823 FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES 882
A++++ P LL+ G ED Q DRF A+ G G + E HG+ +E+
Sbjct: 575 LTRADRVRVPFLLLQGLEDPV--CPPEQCDRFLEAVAGCGVPHAYLSFEGEGHGFRRKET 632
Query: 883 IMHVLWETDRWLQKY 897
++ L +
Sbjct: 633 MVRALEAELSLYAQV 647
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 4e-31
Identities = 90/722 (12%), Positives = 171/722 (23%), Gaps = 188/722 (26%)
Query: 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN 253
+ DG L S + ++ D G+ L + P
Sbjct: 27 LQGVVDGDKLLVV------GFSEGSVNAYL--YDGGETVKLNREPIN-----SVLDPHYG 73
Query: 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYAT 313
+++ E
Sbjct: 74 VGRVIL----------------------------------VRDVSKGAEQ---------- 89
Query: 314 TQLVLVSLDGTVKEIG--PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVW 371
L V+ +E L + ++ + +
Sbjct: 90 HALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYA----------L 139
Query: 372 TTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTP 431
G+ REL LP + + + + +L+ + GG
Sbjct: 140 DGGGL--RELARLP---GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-------- 186
Query: 432 RDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491
+ + + S R R + P
Sbjct: 187 ----------------LRVFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPRDG 228
Query: 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNI 551
V + S+D S + + +A + + + P+GN
Sbjct: 229 SVED---LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFIDGERVEAPQGNH 285
Query: 552 PFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQY 611
+ + K + S T +
Sbjct: 286 GRVV--------------LWRGKLV---TSHTSLSTPPRIVS------------------ 310
Query: 612 YIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLP 671
P + P + + L+ + DG ++ + P P
Sbjct: 311 ----LPSGEPLLEGGLPEDLRRSIA-GSRLVWVESFDGSRVPTYVLESGR----APTPGP 361
Query: 672 CLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL----GGPTTPIIGEG 727
+ + G S + A GF ++ G T G G
Sbjct: 362 TVVLVHGG--------PFAEDSDSWDTFAA-----SLAAAGFHVVMPNYRGST----GYG 404
Query: 728 DE--EANDRF-----VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780
+E +E + A A A E G+A S++ + G+SYG +MT L
Sbjct: 405 EEWRLKIIGDPCGGELEDVSAAARWARE----SGLA--SELYIMGYSYGGYMTLCALTMK 458
Query: 781 PHLFCCGIARSGAYN-----RTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILL 835
P LF G+A + + ++ + SP +++K+P+ L
Sbjct: 459 PGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLAL 518
Query: 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895
+H + + T R L G I+P H E + +L +L
Sbjct: 519 IHPQNASR--TPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLA 576
Query: 896 KY 897
Sbjct: 577 TQ 578
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 41/299 (13%), Positives = 82/299 (27%), Gaps = 44/299 (14%)
Query: 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL 707
+LS TL P G P + + + G + R
Sbjct: 14 GQDELSGTLLTPTGM--------PGVLFVHGW--------GGSQHHSLVRAR-------E 50
Query: 708 WLARGFAIL-----GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIA 762
+ G + G Q + +AA +++ IA
Sbjct: 51 AVGLGCICMTFDLRGH------EGYASMRQSVTRAQNLDDIKAAYDQLASLPYVDAHSIA 104
Query: 763 VGGHSYGAFMTANLLAHAPHLFCCGIA----RSGAYNRTLTPFGFQNEDRTLWEATSTYV 818
V G SYG +++A L P + + + +++ +
Sbjct: 105 VVGLSYGGYLSALLTRERPVEWLALRSPALYKDAHWDQPKVSLNADPDLMDYRRRALAPG 164
Query: 819 EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878
+ + + K +LLV E D + +A + ++ H +
Sbjct: 165 DNLALAACAQYKGDVLLVEAENDVI--VPHPVMRNYADAFT-NARSLTSRVIAGADHALS 221
Query: 879 ARESIMHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTE 937
+E WL + V + ++ ++ + Q V+ G G E
Sbjct: 222 VKEHQQEYTRALIDWLTEMVVGRRIALAKEVVAAR---KQLLKEQQGDAVSLPGQGSRE 277
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 5e-24
Identities = 42/287 (14%), Positives = 79/287 (27%), Gaps = 57/287 (19%)
Query: 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR 699
+ Y+ +++ +P +GP P + Y G G +E
Sbjct: 57 YRLTYKSFGNARITGWYAVPDK-----EGPHPAIVK-YHG------YNASYDGEIHEM-- 102
Query: 700 IGSTSVLLWLARGFAIL----------GGPTTPIIGE-------GDEEANDRFVEQLVAC 742
+ W G+A + G G + + + +
Sbjct: 103 ------VNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLD 156
Query: 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN----RTL 798
A A+E + ++I V G S G +T A + N +
Sbjct: 157 AVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDV 216
Query: 799 TPFGFQNEDR----------TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLT 848
E T +A T A+++K P+L+ G D T
Sbjct: 217 ALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKV--TPP 274
Query: 849 MQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895
+N L+ L + + H Y + + + L+
Sbjct: 275 STVFAAYNHLETKK---ELKVYRYFGHEYIPAFQTEKLAF-FKQILK 317
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 96.5 bits (240), Expect = 1e-20
Identities = 114/762 (14%), Positives = 223/762 (29%), Gaps = 146/762 (19%)
Query: 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAI 245
G +N + S DG+ + + S + D++ + + P+
Sbjct: 59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVT 118
Query: 246 F----DNFVWVNNSTLLVCTIPLLRGDPPKKPLVPL----GPKMQSNEKRDIIQVRTFQD 297
+ +V N+ + V P P + + N D +
Sbjct: 119 WSPVGHKLAYVWNNDIYVK-------IEPNLPSYRITWTGKEDIIYNGITDWV------- 164
Query: 298 LLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPS--PDEKYILISSIHRPY 355
Y+E++F Y+ S +G + Y + + P +Y S Y
Sbjct: 165 -----YEEEVFSAYSALWW---SPNG--TFL----AYAQFNDTEVPLIEYSFYSDESLQY 210
Query: 356 SFIVPCGRFPR--------QVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR 407
V +P+ + V TD + + P + + + W
Sbjct: 211 PKTVRV-PYPKAGAVNPTVKFFVVNTDSLSSVTN-ATSIQITAPASMLIGDHYLCDVTWA 268
Query: 408 SDKPSTLYWA-ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466
+ + +L W Q+ ++ + G ++ + + W
Sbjct: 269 TQERISLQWLRRIQN----------YSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR 318
Query: 467 SLALVYESWYKTRRTRTWVISP-GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVI 525
+ + G + + + T GT+ +
Sbjct: 319 FRPSEPHFTLDGNSFYKIISNEEGYRHIC-----------YFQIDKKDCTFITK-GTWEV 366
Query: 526 AKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI------WESDKEKYYETT 579
I+ + Y + N P G +L+ I ++ ++ +YY +
Sbjct: 367 IGIEALTSDYLYYISNEYKGMPGGR----NLYKIQLIDYTKVTCLSCELNPERCQYYSVS 422
Query: 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQ- 638
+ + S DK + D L ++Q
Sbjct: 423 FSKEAKY-----------YQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQM 471
Query: 639 -KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 697
+ + + + + + LPP +D SK P L Y G + + F
Sbjct: 472 PSKKLDFIILNETKFWYQMILPPHFDKSK--KYPLLLDVYAGP-----CSQKAD---TVF 521
Query: 698 PRIGSTSVLLWLARGFAI--LGGPTTPIIGE----------GDEEANDRFVEQLVACAEA 745
R+ + L + G + G+ G E D Q+
Sbjct: 522 -RLNWATYLA-STENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVED----QI-----E 570
Query: 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG-----AYNRTLTP 800
A + + G +IA+ G SYG ++T+ +L +F CGIA + Y+ T
Sbjct: 571 AARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYT- 629
Query: 801 FGFQNE----DRTLWEATSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFF 855
E T + Y + A K LL+HG D+N QS +
Sbjct: 630 -----ERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDN--VHFQQSAQIS 682
Query: 856 NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
AL G + + E HG A+ + H+ ++++
Sbjct: 683 KALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQC 724
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 92.3 bits (229), Expect = 3e-20
Identities = 38/281 (13%), Positives = 75/281 (26%), Gaps = 41/281 (14%)
Query: 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFW--------SYPGEFKSKDAAGQV--- 690
+ + G ++ L +P ++ LPC+ +P ++ + G +
Sbjct: 71 VTFSGYRGQRIKGWLLVPKL----EEEKLPCVVQYIGYNGGRGFPHDWLFWPSMGYICFV 126
Query: 691 ---RGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAV 747
RG + + + + G P G D + ++ A AV
Sbjct: 127 MDTRGQGSGWLKGDTPD----YPEGPVDPQYPGFMTRGILDPR--TYYYRRVFTDAVRAV 180
Query: 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-------- 799
E +I + G S G + + A + +
Sbjct: 181 EAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRRAVQLVDTHP 240
Query: 800 ----PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855
+ T A + K P L G DN T+ F
Sbjct: 241 YAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTV-----F 295
Query: 856 NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896
A + + I P+ +H + + + +K
Sbjct: 296 AAYNYYAGPKEIRIYPYNNHEGGGSFQAVEQVKFLKKLFEK 336
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 1e-19
Identities = 35/285 (12%), Positives = 74/285 (25%), Gaps = 62/285 (21%)
Query: 628 PHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAA 687
+ ++ + + + G ++ A P +G P L + G
Sbjct: 72 ESSFQ-VSFAECYDLYFTGVRGARIHAKYIKPKT-----EGKHPALIR-FHG-------Y 117
Query: 688 GQVRGSPNEFPRIGSTSVLLWLARGFAIL-------GGPTTPIIGEGDEEANDRFVEQLV 740
G N+ L ++A GF ++ GG + + G N + L
Sbjct: 118 SSNSGDWNDK--------LNYVAAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGHIIRGLD 169
Query: 741 ACAE------------AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788
A+ V+ ++ V G S G ++ A P +
Sbjct: 170 DDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVRKVVS 229
Query: 789 ARSGAYNRTLT------------PFGFQNEDRTLWEATSTYVEMSPFMS----ANKLKKP 832
+ + E + ++ A ++K
Sbjct: 230 EYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGD 289
Query: 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877
+L+ G D +N + + + + P H
Sbjct: 290 VLMCVGLMDQV--CPPSTVFAAYNNI---QSKKDIKVYPDYGHEP 329
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 3e-19
Identities = 71/310 (22%), Positives = 114/310 (36%), Gaps = 75/310 (24%)
Query: 624 ITDFPHPYPQLASLQK--ELIKYQRKDG-VQLSATLYLPPGYDPSKDGPLPCLFWSYPGE 680
+ D HPY + Q+ E DG L+ ++ P G+DP+K P + Y G
Sbjct: 470 LADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAGFDPAK--RYPVAVYVYGGP 527
Query: 681 FKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAI--LGGPTTPIIGE----------G 727
A+ V + +P G +LA +G+ + L TP G G
Sbjct: 528 -----ASQTV---TDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGALYGKQG 579
Query: 728 DEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787
E D QL V + ++ P++I V G S G +MT LLA A + CG
Sbjct: 580 TVEVAD----QL-----RGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACG 630
Query: 788 IARSGA---------------YNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKP 832
+A GA Y +N+ Y E L+ P
Sbjct: 631 VA--GAPVTDWGLYDSHYTERYMDLPA----RNDAG--------YREARVLTHIEGLRSP 676
Query: 833 ILLVHGEEDNN---SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889
+LL+HG D+N + + +AL+ G L+ P HG + +++ +
Sbjct: 677 LLLIHGMADDNVLFTNST-----SLMSALQKRGQPFELMTYPGAKHGLSGADALH--RYR 729
Query: 890 T-DRWLQKYC 898
+ +L +
Sbjct: 730 VAEAFLGRCL 739
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 2e-18
Identities = 73/418 (17%), Positives = 129/418 (30%), Gaps = 70/418 (16%)
Query: 507 YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLF--DINTGSK 564
Y + ++G + I + + + N P +++ I +
Sbjct: 341 YIKDTVENAIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRR----NIYRISIGSYPP 396
Query: 565 ERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQI 624
+ + + S Y D++ +
Sbjct: 397 SKKCVTCHLRKERCQYYTASFSDYAKYYAL------VCYGPGIPISTLHDGRTDQEIKIL 450
Query: 625 TDFPHPYPQLASLQKELIKYQ--RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFK 682
+ L ++Q + + D + L + LPP +D SK P L Y G
Sbjct: 451 EENKELENALKNIQLPKEEIKKLEVDEITLWYKMILPPQFDRSK--KYPLLIQVYGGP-- 506
Query: 683 SKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI--LGGPTTPIIGE----------GDEE 730
+ V + F + S L G I + G T G+ G E
Sbjct: 507 ---CSQSV---RSVF-AVNWISYLA-SKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYE 558
Query: 731 ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790
D Q+ AV + + G +IA+ G SYG ++++ LA LF CGIA
Sbjct: 559 VED----QI-----TAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAV 609
Query: 791 SG---------AYN-RTL-TPFGFQNEDRTLWEATSTYVEMSPFMSANKLK-KPILLVHG 838
+ Y R + P N + Y + A + LL+HG
Sbjct: 610 APVSSWEYYASVYTERFMGLPTKDDNLEH--------YKNSTVMARAEYFRNVDYLLIHG 661
Query: 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896
D+N S + AL + + ++HG + S H+ +L++
Sbjct: 662 TADDN--VHFQNSAQIAKALVNAQVDFQAMWYSDQNHGL-SGLSTNHLYTHMTHFLKQ 716
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 2e-18
Identities = 57/316 (18%), Positives = 99/316 (31%), Gaps = 63/316 (19%)
Query: 609 TQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDG-VQLSATLYLPPGYDPSKD 667
+ + + K S + + +P A + DG L L +P +DP+K
Sbjct: 426 RKVTVTN-IGKGSHTLLEAKNPDTGYAMPEIRTGTIMAADGQTPLYYKLTMPLHFDPAK- 483
Query: 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAI--LGGPTTPII 724
P + + Y G + + R +++A +G+A+ + +
Sbjct: 484 -KYPVIVYVYGG--------PHAQLVTKTW-RSSVGGWDIYMAQKGYAVFTVDSRGSANR 533
Query: 725 GE----------GDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA 774
G G E D Q+ V+ + + +I V G SYG FMT
Sbjct: 534 GAAFEQVIHRRLGQTEMAD----QM-----CGVDFLKSQSWVDADRIGVHGWSYGGFMTT 584
Query: 775 NLLAHAPHLFCCGIARSG---------AYN-RTLTPFGFQNEDRTLWEATSTYVEMSPFM 824
NL+ +F G+A Y R E Y +
Sbjct: 585 NLMLTHGDVFKVGVAGGPVIDWNRYAIMYGERYF---------DAPQENPEGYDAANLLK 635
Query: 825 SANKLKKPILLVHGEEDNN---SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881
A LK ++L+HG D +L F +A + P H +
Sbjct: 636 RAGDLKGRLMLIHGAIDPVVVWQHSL-----LFLDACVKARTYPDYYVYPSHEHNVMGPD 690
Query: 882 SIMHVLWETDRWLQKY 897
+ H+ R+ +
Sbjct: 691 RV-HLYETITRYFTDH 705
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 3e-17
Identities = 48/319 (15%), Positives = 87/319 (27%), Gaps = 63/319 (19%)
Query: 609 TQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQ--RKDGVQLSATLYLPPGYDPSK 666
+ KK + H + Q ++Y+ D L + P + +
Sbjct: 435 MVTVHNTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEIDDYNLPMQILKPATFTDTT 494
Query: 667 DGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAI--LGGPTTPI 723
P L + V + ++ G + G +
Sbjct: 495 --HYPLLLVVDGT-----PGSQSVAEKFEVSWE------TVMVSSHGAVVVKCDGRGSGF 541
Query: 724 IGE----------GDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMT 773
G G E D Q+ AV +++ +++AV G YG +++
Sbjct: 542 QGTKLLHEVRRRLGLLEEKD----QM-----EAVRTMLKEQYIDRTRVAVFGKDYGGYLS 592
Query: 774 ANLLAHAP----HLFCCGIARSG---------AYN-RTLTPFGFQNEDRTLWEATSTYVE 819
+L F CG A S A++ R L Y
Sbjct: 593 TYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYL---------GLHGLDNRAYEM 643
Query: 820 MSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878
+ L++ L++H D + L A L I P ESH +
Sbjct: 644 TKVAHRVSALEEQQFLIIHPTADEK--IHFQHTAELITQLIRGKANYSLQIYPDESHYFT 701
Query: 879 ARESIMHVLWETDRWLQKY 897
+ H+ + +
Sbjct: 702 SSSLKQHLYRSIINFFVEC 720
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 7e-14
Identities = 65/409 (15%), Positives = 121/409 (29%), Gaps = 96/409 (23%)
Query: 505 DVYSDPGSPMMRRTSTGTYVIA----KIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN 560
V G RT T Y N+ G Y++L L D++
Sbjct: 44 SVKVKTGDTYSSRTITKVYANNSGGLSFSIFNNRGKYVVLE------------LSTEDLH 91
Query: 561 TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620
+ + ++ + + D ++QL + + + + D+K
Sbjct: 92 SNT------------IVFGPNFLNTRMKLDYIVSQLVPIFDVDGNE--VEPFTSKQTDEK 137
Query: 621 SCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGE 680
I DF + GV++ L++P +P + PL + + + G
Sbjct: 138 HLIIDDF-----------LAFTFKDPETGVEIPYRLFVPKDVNPDRKYPL--VVFLH-G- 182
Query: 681 FKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG-----PTTPIIG----EGDEEA 731
AG+ RG+ N G+ ++W + ++ P P +
Sbjct: 183 ------AGE-RGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDRE 235
Query: 732 NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791
N E+ + + +++ ++I + G S G + T + P LF I
Sbjct: 236 NPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPIC 295
Query: 792 GAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQ 850
G + ++K PI + H E+D
Sbjct: 296 GGGD---------------------------VSKVERIKDIPIWVFHAEDDPVV--PVEN 326
Query: 851 SDRFFNALKGHGALCRLVILP---FESHGYAARESIMHVLWETD--RWL 894
S L G R E HG+ S + + WL
Sbjct: 327 SRVLVKKLAEIGGKVRYTEYEKGFMEKHGWDPHGSWIPTYENQEAIEWL 375
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 2e-12
Identities = 32/199 (16%), Positives = 54/199 (27%), Gaps = 18/199 (9%)
Query: 707 LWLARGFAIL-------GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPS 759
+ RGF +L G P + + E A
Sbjct: 46 GYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGL 105
Query: 760 KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819
+ + G S GAF+ LLA + L + L +
Sbjct: 106 PLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKLPQGQVVEDPGVL-----ALYQ 160
Query: 820 MSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878
P P+L +HG D+ + ++ AL+ H RL E G+
Sbjct: 161 APPATRGEAYGGVPLLHLHGSRDHI--VPLARMEKTLEALRPHYPEGRLARFVEEGAGHT 218
Query: 879 ARESIMHVLWETDRWLQKY 897
+ +L+ +
Sbjct: 219 LTPL---MARVGLAFLEHW 234
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* Length = 251 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 4e-12
Identities = 48/283 (16%), Positives = 84/283 (29%), Gaps = 68/283 (24%)
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWS--YPGEFKSKDAAGQVRGSPNEFPRIG 701
Y DG++L+A L +P P + G + +
Sbjct: 5 YIDCDGIKLNAYLDMPKN----NPEKCPLCIIIHGFTG---HSEERH--------IVAVQ 49
Query: 702 STSVLLWLA-RGFAIL-------GGPTTPIIGEGD-EEANDRFVEQLVACAEAAVEEVVR 752
L G A L G +G E+ + + + A V+ +
Sbjct: 50 E-----TLNEIGVATLRADMYGHGK------SDGKFEDHT---LFKWLTNILAVVDYAKK 95
Query: 753 RGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-----RTLTPFGFQNED 807
+ I + GHS G A + I S A RT G + +
Sbjct: 96 LD--FVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDP 153
Query: 808 RTLWEATSTYV-------------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854
+ + + + +K KP+L+VHG++D S F
Sbjct: 154 ENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEA--VPYEASVAF 211
Query: 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
K C+LV +P ++H Y + V ++ +
Sbjct: 212 SKQYKN----CKLVTIPGDTHCYDHHLEL--VTEAVKEFMLEQ 248
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} Length = 405 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 3e-11
Identities = 43/252 (17%), Positives = 77/252 (30%), Gaps = 54/252 (21%)
Query: 664 PSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723
P + LP K++D V G ++ L+ G++ +
Sbjct: 141 PFEGELLPGYAIISED--KAQDTLIVVGG-------GDTSREDLFYMLGYSGWEHDYNVL 191
Query: 724 I----GEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779
+ G+G N A AA+ ++ A KIA+ G S G + TA +
Sbjct: 192 MVDLPGQGK---NPNQGLHFEVDARAAISAILDWYQAPTEKIAIAGFSGGGYFTAQAVEK 248
Query: 780 APHLFCCGIARSGAYN-----------------------------------RTLTPFGFQ 804
+ IA + Y+ L + +Q
Sbjct: 249 DKRIKAW-IASTPIYDVAEVFRISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQ 307
Query: 805 NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864
+ + +E + + NK+ P L + G +++ L QS ++ K G
Sbjct: 308 FGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDS--ELMRQSQVLYDNFKQRGID 365
Query: 865 CRLVILPFESHG 876
L ES
Sbjct: 366 VTLRKFSSESGA 377
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 4e-11
Identities = 46/262 (17%), Positives = 74/262 (28%), Gaps = 45/262 (17%)
Query: 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL 707
DG+ + + +P G GP P + E + E ++ + L
Sbjct: 135 DGIPMPVYVRIPEG-----PGPHPAVIMLGGLE-----------STKEESFQMEN----L 174
Query: 708 WLARGFAILG--GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGG 765
L RG A GP G+G+ R A V+ + + I V G
Sbjct: 175 VLDRGMATATFDGP-----GQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLG 229
Query: 766 HSYGAFMTANLLAHAPHLFCCGIARSGAYN----RTLTPFGFQNEDRTLWEATSTYV--- 818
S G A P L C I+ G + TP ++ T
Sbjct: 230 RSLGGNYALKSAACEPRLAAC-ISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLH 288
Query: 819 ---EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875
+ +++ P ++HG D + D + LV+ H
Sbjct: 289 VHAALETRDVLSQIACPTYILHGVHDEVPLS---FVDTVLELVPAEHL--NLVVEKDGDH 343
Query: 876 GYAARESIMHVLWETDRWLQKY 897
+ E WL
Sbjct: 344 CCHNLGIRPRL--EMADWLYDV 363
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 2e-10
Identities = 37/244 (15%), Positives = 69/244 (28%), Gaps = 33/244 (13%)
Query: 656 LYLPPG--YDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713
+LPPG + G + P + G + L GF
Sbjct: 129 HFLPPGVWRQSVRAGRVRA-TLFLPPGPGPFPGIIDIFGIG---GGLLEYRASLLAGHGF 184
Query: 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMT 773
A L E + + E AV +++ I + G S GA +
Sbjct: 185 ATLA--LAYYNFEDLP---NNMDNISLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADIC 239
Query: 774 ANLLAHAPHLFCCGIARSGA--------------------YNRTLTPFGFQNEDRTLWEA 813
++ + ++ R F + + A
Sbjct: 240 LSMASFLKNVSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNA 299
Query: 814 TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPF 872
+ + K + PILL+ G++D+N + + L+ HG +++ P
Sbjct: 300 LVGGYKNPSMIPIEKAQGPILLIVGQDDHNWRSELY-AQTVSERLQAHGKEKPQIICYPG 358
Query: 873 ESHG 876
H
Sbjct: 359 TGHY 362
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} Length = 391 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 3e-10
Identities = 36/298 (12%), Positives = 71/298 (23%), Gaps = 45/298 (15%)
Query: 632 PQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR 691
+ E ++ + + P G +P + + G+
Sbjct: 80 EKKEGYILEKWEFYPFPKSVSTFLVLKPEH----LKGAVPGVLCIPGSGRTKEGLVGEPG 135
Query: 692 GSPNEFPRIGSTSV---LLWLARGFAIL-----------GGPTTPIIGEGDEEANDRFVE 737
+ V L + G+ + D + RF+
Sbjct: 136 ICDKLTEDYNNPKVSMALNMVKEGYVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLL 195
Query: 738 QL--------VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH-------APH 782
+L + + + +I + G S G L +
Sbjct: 196 ELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVLGVLDKDIYAFVYN 255
Query: 783 LFCCGIARSGAYNRTLTP---FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGE 839
F C F N R L Y P + A+ +PI+ G
Sbjct: 256 DFLCQTQERAVVMTKPDKENRRPFPNSIRHLIPGYWRYFNF-PDVVASLAPRPIIFTEGG 314
Query: 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVL--WETDRWLQ 895
D + A G P + A R+ + H+ ++ + +
Sbjct: 315 LD----RDFRLVQSAYAAS-GKPENAEFHHYP-KFADKAVRKDVEHLDEGLDSKTYFE 366
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 8e-10
Identities = 83/601 (13%), Positives = 154/601 (25%), Gaps = 190/601 (31%)
Query: 78 SSSNAVATEDEDNLEGRYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEEL 137
V E+ L Y+ I+ P + + QRD+ L+ + +
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR-LYNDNQVFAKY-NV 131
Query: 138 ARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG-----------QEIEIQ-GF 185
+R + L LR + + I G LG ++Q
Sbjct: 132 SRLQPYLK-LR-----QALLELRPAKNVLID-----GVLGSGKTWVALDVCLSYKVQCKM 180
Query: 186 PDGAKLNFVTW---SQDGKH-------LAFSIRID----AEDSSSSKLRVWVADVDTGKA 231
+ W +ID + SS +++ + +
Sbjct: 181 DFK-----IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 232 RPLFQSPDIYLNA--IFDNFVWVNNSTL----LVCTIPLL-------------------R 266
R L +S Y N + N V N L C I LL
Sbjct: 236 R-LLKSKP-YENCLLVLLN-VQ-NAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHIS 290
Query: 267 GDPPKKPLVP----------LGPKMQS--NEKRDI--IQVRTFQDLLKDEYDEDLFDYY- 311
D L P L + Q E ++ + ++D +D +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD--GLATWDNWK 348
Query: 312 -----ATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPY-SFIVPCGRFP 365
T ++ SL+ L+P+ K + V FP
Sbjct: 349 HVNCDKLTTIIESSLN-------------VLEPAEYRKM---------FDRLSV----FP 382
Query: 366 RQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425
+ D+ ++ + + + + + + K ST+
Sbjct: 383 P--SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VE-KQPKESTIS---------- 427
Query: 426 KVEVTPRDIIYT-QQAEPVQGEGPEILHK--LDLRYGGI-SWCDDSLALVYES--WY--- 476
I + V+ E LH+ +D Y ++ D L Y +Y
Sbjct: 428 ---------IPSIYLELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 477 -----KTRRTRTWVISPGSKDVAPRILFD--------RSSEDVYSDPGSPMMRRTSTGTY 523
+ + D R ++ GS + Y
Sbjct: 478 GHHLKNIEHPERM-------TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 524 --VIAKIKKENDEGTYILLNGNGATPEGNI---PFLDLFDINTGSKERIWESDKEKYYET 578
I + + +L+ E N+ + DL I ++ E +E
Sbjct: 531 KPYICDNDPKYERLVNAILD-FLPKIEENLICSKYTDLLRI-------ALMAEDEAIFEE 582
Query: 579 T 579
Sbjct: 583 A 583
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A Length = 303 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 9e-10
Identities = 39/258 (15%), Positives = 71/258 (27%), Gaps = 49/258 (18%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF-- 713
++ P + + G + + I + RG+
Sbjct: 72 VFYSEK----TTNQAPLFVFVHGGYW--------QEMDMSMSCSIVGP----LVRRGYRV 115
Query: 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVA-HPSKIAVGGHSYGAFM 772
A++ P + +EQL+ + + S + GH GA +
Sbjct: 116 AVMDYNLCP-------QVT---LEQLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHL 165
Query: 773 TANLLAHA-------PHLFCCGIARSGAYN-RTLTPFGFQNEDRTLWEATSTYVEMSPFM 824
A +L + I G Y+ R L+ N L +SP +
Sbjct: 166 LAQILMRPNVITAQRSKMVWALIFLCGVYDLRELSNLESVNPKNILGLNERNIESVSPML 225
Query: 825 SANKLKK-----PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA 879
I +V E D S T QS + + L+ G + H
Sbjct: 226 WEYTDVTVWNSTKIYVVAAEHD--STTFIEQSRHYADVLRKKGYKASFTLFKGYDHF--- 280
Query: 880 RESIMHVLWETDRWLQKY 897
I+ D + ++
Sbjct: 281 --DIIEETAIDDSDVSRF 296
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} Length = 398 | Back alignment and structure |
|---|
Score = 60.2 bits (145), Expect = 1e-09
Identities = 35/290 (12%), Positives = 72/290 (24%), Gaps = 47/290 (16%)
Query: 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPC--LFWSYPGEFKSKDAAGQVRGSPNEF 697
E ++ + + +P + P+P G + + N+
Sbjct: 93 EKWEFYPLPKCVSTFLVLIPDN----INKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDR 148
Query: 698 PRIGSTSVLLWLA-RGFAIL-----------GGPTTPIIGEGDEEANDRFVEQL------ 739
+ + L G+ + + D + R++ +L
Sbjct: 149 YKDPKLTQALNFVKEGYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLG 208
Query: 740 --VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC----CGIARSGA 793
+ + + +I V G S G L ++ + ++
Sbjct: 209 YASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVLGTLDTSIYAFVYNDFLCQTQE 268
Query: 794 YNRTLTP------FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTL 847
+T F N R L P + A +PI+L G D
Sbjct: 269 RAEVMTMPDKNGRRPFPNSIRHLIPDFWKNFNF-PDIVAALAPRPIILTEGGLD------ 321
Query: 848 TMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
D A G + I ++ + L L +
Sbjct: 322 -RDLDLVRKAYAIVGTPDNVKIYHYKKFSDPDTRKNVEYL---PEGLDRN 367
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 2e-09
Identities = 31/226 (13%), Positives = 62/226 (27%), Gaps = 44/226 (19%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
L+LP G P+ + + G + + + + L++G+A+
Sbjct: 55 LFLPEG------TPVGLFVFVHGG--------YWMAFDKSSWSHLAVG----ALSKGWAV 96
Query: 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775
+ + ++ AV + I + GHS G + A
Sbjct: 97 AMPSYEL--------CPEVRISEITQQISQAVTAAAKE---IDGPIVLAGHSAGGHLVAR 145
Query: 776 LLAHAPHLFCCG------IARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL 829
+L G + S + L P + + + SP N+
Sbjct: 146 MLDPEVLPEAVGARIRNVVPISPLSD--LRPLLRTSMNEKFKMDADAAIAESPVEMQNRY 203
Query: 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875
+ + G + Q+ A VI + H
Sbjct: 204 DAKVTVWVGGAE--RPAFLDQAIWLVEAWD-----ADHVIAFEKHH 242
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 5e-09
Identities = 34/243 (13%), Positives = 73/243 (30%), Gaps = 33/243 (13%)
Query: 657 YLPPG--YDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714
+LPPG +P + G P E + G+ + L +GFA
Sbjct: 146 FLPPGVRREPVRVG-RVRGTLFLPPEPGPFPGIVDMFGTG---GGLLEYRASLLAGKGFA 201
Query: 715 ILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA 774
++ + + +E E A+ ++ + + G S G +
Sbjct: 202 VMA-LAYYNYEDLPKTMETLHLEYF----EEAMNYLLSHPEVKGPGVGLLGISKGGELCL 256
Query: 775 NLLAHAPHLFCCGIARSGAYN---------RTLTPFGFQNED-----------RTLWEAT 814
++ + + + N TL P G + +
Sbjct: 257 SMASFLKGITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSP 316
Query: 815 STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPFE 873
+ F+ + + L + G++D+N + + L+ HG +++ P
Sbjct: 317 LEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEFYA-NEACKRLQAHGRRKPQIICYPET 375
Query: 874 SHG 876
H
Sbjct: 376 GHY 378
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 1e-07
Identities = 26/241 (10%), Positives = 51/241 (21%), Gaps = 39/241 (16%)
Query: 627 FPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYD----PSKDGPLPCLFWSYPGEFK 682
Q + A P + G + + K
Sbjct: 139 HLKSDNLAIQAQVLANSAYLE------AAKKSKYIIKQLEIPFEKGKITAHLHLTNTD-K 191
Query: 683 SKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL--GGPTTPIIGEGDEEANDRFVEQLV 740
G + + A+L P G + E
Sbjct: 192 PHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMP-----SVG-YSSKYPLTEDYS 245
Query: 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT- 799
+A + E+ ++ + G +G L + +
Sbjct: 246 RLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFAS 305
Query: 800 -------PFGFQNEDRTLWEATSTYVEM------------SPFMSANKLKKPILLVHGEE 840
P + + + + + F+S+ K K PIL + E
Sbjct: 306 PQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEG 365
Query: 841 D 841
D
Sbjct: 366 D 366
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 Length = 273 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 1e-07
Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 35/163 (21%)
Query: 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH-----------------APHLFC 785
A + + +V+ + I + GHS GA +LA +
Sbjct: 100 AVSNITRLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVK 157
Query: 786 CGIARSGAYNRTLTPFGFQN----------EDRTLWEATSTYVEMSPFMSANKLKKPILL 835
G Y+ + + ++E + V + ++ + L
Sbjct: 158 RVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHL 217
Query: 836 VHGEEDNNSGTL--TMQSDRFFNALKGHGALCRLVILPFESHG 876
VH D L Q++ + L+ + +L + H
Sbjct: 218 VHSYSD----ELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHN 256
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} Length = 276 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 35/272 (12%), Positives = 69/272 (25%), Gaps = 46/272 (16%)
Query: 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR 699
+ D + Y +++ P + PG G S E
Sbjct: 15 NKSTFSLNDTAWV--DFYQLQNPRQNENYTFPAIII-CPG-------GGYQHISQRES-- 62
Query: 700 IGSTSVLLWLA-RGFAI------LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVR 752
+ L +G+ + + + + L ++
Sbjct: 63 ---DPLALAFLAQGYQVLLLNYTVMN---------KGTNYNFLSQNLEEVQAVF--SLIH 108
Query: 753 RGVA----HPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDR 808
+ +P ++ + G S G + A G+ Y T FG+ ++
Sbjct: 109 QNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVI--LCYPVTSFTFGWPSDLS 166
Query: 809 TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868
E + P + H +D G S ++ + L H
Sbjct: 167 HFNFEIENISEYNISEKVTSSTPPTFIWHTADDE--GVPIYNSLKYCDRLSKHQVPFEAH 224
Query: 869 ILPFESHGYAAR-----ESIMHVLWETDRWLQ 895
HG + S + L RW+
Sbjct: 225 FFESGPHGVSLANRTTAPSDAYCLPSVHRWVS 256
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* Length = 268 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 40/268 (14%), Positives = 74/268 (27%), Gaps = 63/268 (23%)
Query: 653 SATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG 712
A +YLPPGY K L+ G GS N++ G +
Sbjct: 47 PARVYLPPGYSKDK--KYSVLYLL----------HGI-GGSENDWFEGGG---RANVIAD 90
Query: 713 FAILGGPTTPII---------GEGDEEANDRFVEQLVACAEAAVEEVVR------RGVAH 757
I G P+I G G + + F + L+ ++
Sbjct: 91 NLIAEGKIKPLIIVTPNTNAAGPGIADGYENFTKDLL-------NSLIPYIESNYSVYTD 143
Query: 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTY 817
A+ G S G + N+ F S A N F + +
Sbjct: 144 REHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPNTYPNERLFPDGGK--------- 194
Query: 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877
+A + K + + G D+ L R + ++ H +
Sbjct: 195 -------AAREKLKLLFIACGTNDS----LIGFGQRVHEYCVANNINHVYWLIQGGGHDF 243
Query: 878 AA-RESIMHVLWETDRWLQKYCVSNTAD 904
+ + + L + + ++ +
Sbjct: 244 NVWKPGLWNFL----QMADEAGLTRDGN 267
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* Length = 277 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 35/269 (13%), Positives = 61/269 (22%), Gaps = 53/269 (19%)
Query: 647 KDGVQLSATLYLPPGY-DPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV 705
T Y D P + PG G S E +
Sbjct: 11 TAAHPFQITAYWLDQISDFETAVDYPIMII-CPG-------GGFTYHSGREE-----API 57
Query: 706 LLWLA-RGFA-------ILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAH 757
+ G ++ G + + L A ++ + + AH
Sbjct: 58 ATRMMAAGMHTVVLNYQLIVGDQS------------VYPWALQQLG-ATIDWITTQASAH 104
Query: 758 ---PSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNR-----------TLTPFG 802
+I + G S G + A A + LT G
Sbjct: 105 HVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLTA-G 163
Query: 803 FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
F + T+ + KP + D + S ++ A+ H
Sbjct: 164 FPTTSAARNQITTDARLWAAQRLVTPASKPAFVWQTATD--ESVPPINSLKYVQAMLQHQ 221
Query: 863 ALCRLVILPFESHGYAARESIMHVLWETD 891
+ HG A + +
Sbjct: 222 VATAYHLFGSGIHGLALANHVTQKPGKDK 250
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} Length = 283 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 39/268 (14%), Positives = 70/268 (26%), Gaps = 39/268 (14%)
Query: 629 HPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAG 688
H + + Q + Q+ T YL + LP + PG
Sbjct: 9 HHHHENLYFQGMQVIKQKLTATCAQLTGYLHQPDTNAHQTNLPAIII-VPG-------GS 60
Query: 689 QVRGSPNEFPRIGSTSVLLWLA-RGFA--ILGGPTTPIIGEGDEEANDRFVEQLVACAEA 745
+ + + A G+ L + + ++
Sbjct: 61 YTHIPVAQAESLA-----MAFAGHGYQAFYLEYTLLT-------DQQPLGLAPVLDLG-R 107
Query: 746 AVEEVVRRGVAH---PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR------ 796
AV + + P +I G S G + A + + + A +
Sbjct: 108 AVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVVL 167
Query: 797 ----TLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSD 852
GF +D TL T T E++ N +P + +D +
Sbjct: 168 GYPVISPLLGFPKDDATLATWTPTPNELAADQHVNSDNQPTFIWTTADD--PIVPATNTL 225
Query: 853 RFFNALKGHGALCRLVILPFESHGYAAR 880
+ AL L + HG A
Sbjct: 226 AYATALATAKIPYELHVFKHGPHGLALA 253
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* Length = 403 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 20/149 (13%), Positives = 34/149 (22%), Gaps = 31/149 (20%)
Query: 655 TLYLPPGYDPSK-------DGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL 707
++ + DG S Q+
Sbjct: 185 WIFTTGDVTAEERPLAVLLDGEFWAQSMPVWPVLTSLTHRQQLPP--------------- 229
Query: 708 WLARGFAILGGPTTPIIGEGDEE--ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGG 765
A+ E N F + V+ + + V G
Sbjct: 230 ------AVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVIAPF-SDRADRTVVAG 282
Query: 766 HSYGAFMTANLLAHAPHLFCCGIARSGAY 794
S+G H P F C +++SG+Y
Sbjct: 283 QSFGGLSALYAGLHWPERFGCVLSQSGSY 311
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* Length = 297 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 2e-06
Identities = 45/289 (15%), Positives = 75/289 (25%), Gaps = 52/289 (17%)
Query: 623 QITDFPHPYPQLASLQKELIKYQ-RKDGVQLSATLYLPPGYDPSKDGPLPCLFW--SYPG 679
Q P Y ++K S +YLP GYDP+K +
Sbjct: 23 QYRPAPDSYLNPCPQAGRIVKETYTGINGTKSLNVYLPYGYDPNK--KYNIFYLMHGGGE 80
Query: 680 EFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII-----GEGDEEANDR 734
+ F +L AI+ G P+I G
Sbjct: 81 NENTI------------FSNDVKLQNIL----DHAIMNGELEPLIVVTPTFNGGNCTAQN 124
Query: 735 F----VEQLVACAEA-----AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC 785
F + ++ E+ A + A GG + G T ++ +
Sbjct: 125 FYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVA 184
Query: 786 CGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG 845
+ SG Y +P N + +K + + G ED
Sbjct: 185 YFMPLSGDYWYGNSPQDKANSIAEAINRS----------GLSKREYFVFAATGSEDIAYA 234
Query: 846 TLTMQSD------RFFNALKGHGALCRLVILPFESHGYAA-RESIMHVL 887
+ Q + F ++ P +H + R I L
Sbjct: 235 NMNPQIEAMKALPHFDYTSDFSKGNFYFLVAPGATHWWGYVRHYIYDAL 283
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 Length = 223 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 22/150 (14%), Positives = 37/150 (24%), Gaps = 29/150 (19%)
Query: 722 PIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP 781
I E + A A E +R + G+S GA + ++L+ P
Sbjct: 76 ERIDPTRFEQKS--ILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHP 133
Query: 782 HLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEED 841
+ + + + L++ G D
Sbjct: 134 GIVRLAALLRP------------------------MPVLDHVPATDLAGIRTLIIAGAAD 169
Query: 842 NNSGTLTMQSDRFFNALKGHGALCRLVILP 871
T L HGA I+P
Sbjct: 170 E---TYGPFVPALVTLLSRHGAEVDARIIP 196
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* Length = 278 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 7e-06
Identities = 36/289 (12%), Positives = 63/289 (21%), Gaps = 57/289 (19%)
Query: 624 ITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYP----- 678
I D + ++ + + R V +P P+ YP
Sbjct: 3 IADKGSVFYHFSATSFDSVDGTRHYRVWT----AVPNTTAPAS---------GYPILYML 49
Query: 679 -GE--FKSKDAAGQVRGSPNEFPRI-----GSTSVLLWLARGF------AILGGPTTPII 724
G D + S P I + +R +
Sbjct: 50 DGNAVMDRLDDELLKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGR 109
Query: 725 GEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784
++ F + L VE+ + + + GHSYG + F
Sbjct: 110 FSRKSGGSNNFRQLLETRIAPKVEQGLN---IDRQRRGLWGHSYGGLFVLDSWLS-SSYF 165
Query: 785 CCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNS 844
+ S + + ++ K + ++ G
Sbjct: 166 RSYYSASPSL---------------GRGYDALLSRVTAVEPLQFCTKHLAIMEGSATQGD 210
Query: 845 GTLTMQSD------RFFNALKGHGALCRLVILPFESHGYAARESIMHVL 887
T LK G P HG S L
Sbjct: 211 NRETHAVGVLSKIHTTLTILKDKGVNAVFWDFPNLGHGPMFNASFRQAL 259
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 8e-06
Identities = 32/215 (14%), Positives = 61/215 (28%), Gaps = 52/215 (24%)
Query: 196 WSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS 255
S DGK +AF + +WVAD++T ++ + ++ +I + W +S
Sbjct: 66 ISPDGKKIAFM----RANEEKKVSEIWVADLETLSSKKILEAKNI------RSLEWNEDS 115
Query: 256 TLLVCTIPLLRGDPP-----KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDY 310
L+ R D P EK T + + +E+++ F
Sbjct: 116 RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSS 175
Query: 311 YA-------------------TTQLVLVSLDGTVKE-----IGPPAVYTSLDPSPDEKYI 346
+ + +E + AV D + I
Sbjct: 176 GIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEKVSFYAV------DSDGERI 229
Query: 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL 381
L+ ++ DG V +
Sbjct: 230 LLYGKPEKK-------YMSEHNKLYIYDGKEVMGI 257
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} Length = 367 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 51/314 (16%), Positives = 86/314 (27%), Gaps = 96/314 (30%)
Query: 630 PYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLF----WSYPGEFKSKD 685
+P A ++ + + + G+ L+A LYLP + LP + + E S
Sbjct: 59 TFPLSAKVEHRKVTFANRYGITLAADLYLPKNRGGDR---LPAIVIGGPFGAVKEQSSGL 115
Query: 686 AAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEA 745
A G L + GG + D D A
Sbjct: 116 YA-------QTMAERG-FVTLAFDPSYTGESGG-QPRNVASPDINTED---------FSA 157
Query: 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL--------FCCGIARSGAYNRT 797
AV+ + + +I V G M N +A + + S YN +
Sbjct: 158 AVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKRVKAVVTSTMYDMTRVMSKGYNDS 217
Query: 798 LTPFGFQ------NEDRTL----------------------------------------- 810
+T + R
Sbjct: 218 VTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRA 277
Query: 811 ------WEATS--TYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861
W T+ +++ M ++ +PILL+HGE S+ + A
Sbjct: 278 VNSGNAWTMTTPLSFMNMPILTYIKEISPRPILLIHGERA----HSRYFSETAYAAAAEP 333
Query: 862 GALCRLVILPFESH 875
L+I+P SH
Sbjct: 334 K---ELLIVPGASH 344
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 Length = 226 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 26/119 (21%)
Query: 723 IIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782
+ EG + D + ++E + + I G+S GA + A+LL H +
Sbjct: 85 RLAEGIFDEED--LIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYEN 142
Query: 783 LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEED 841
+ V AN K + + G D
Sbjct: 143 ALKGAVLHHP------------------------MVPRRGMQLANLAGKSVFIAAGTND 177
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* Length = 270 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 45/296 (15%), Positives = 80/296 (27%), Gaps = 63/296 (21%)
Query: 626 DFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKD 685
L I +R DG+QL T P G G F +
Sbjct: 9 HHSSGRENLYFQGMATITLER-DGLQLVGTREEPFG------EIYDMAIIF-HG-FTAN- 58
Query: 686 AAGQVRGSPNEFPRIGSTSVLL--WLA-RGFAIL-----GGPTTPIIGEGDEEANDRFVE 737
R S + L A + G G+ D + + V
Sbjct: 59 -------------RNTSLLREIANSLRDENIASVRFDFNGH------GDSDGKFENMTVL 99
Query: 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-- 795
+ A A + V H I + GH+ G + + L P L + + A
Sbjct: 100 NEIEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLK 157
Query: 796 RTLTPFGFQNEDRTLWEATSTYV---------------EMSPFMSANKLKKPILLVHGEE 840
Q ++ + + + KP+ L+HG +
Sbjct: 158 GDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTD 217
Query: 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896
D + S ++ + L ++ H ++ + + T +LQ
Sbjct: 218 D-TVVSPNA-SKKYDQIYQNS----TLHLIEGADHCFSDSYQK-NAVNLTTDFLQN 266
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A Length = 251 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 5e-05
Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 36/203 (17%)
Query: 692 GSPNEFPRIGSTSVLLWLAR-GFAILGGPTTPIIG--EGDEEANDRFVEQLVACAEAAVE 748
GSPN+ + L R G+ + P G E + + A + AAV
Sbjct: 33 GSPNDMNFMAR-----ALQRSGYGVYV-PLFSGHGTVEPLDILTKGNPDIWWAESSAAVA 86
Query: 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY--NRTLTPF----- 801
+ + +K+ V G S G L P + G+ S L P
Sbjct: 87 HMTAKY----AKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLKYA 142
Query: 802 -------GFQNEDRTLWEATSTYV-EMSPFMS-----ANKLKKPILLVHGEEDNNSGTLT 848
G +E + + + F + N +K+P + +D
Sbjct: 143 EYMNRLAGKSDESTQILAYLPGQLAAIDQFATTVAADLNLVKQPTFIGQAGQD--ELVDG 200
Query: 849 MQSDRFFNALKGHGALCRLVILP 871
+ + +AL A
Sbjct: 201 RLAYQLRDALINA-ARVDFHWYD 222
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} Length = 209 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 9e-05
Identities = 18/123 (14%), Positives = 31/123 (25%), Gaps = 27/123 (21%)
Query: 722 PIIGEGDEEANDRFVEQLVACAEA---AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA 778
+ G G + +E L + V + + K+ G+S GA + N+
Sbjct: 62 KLRGLGGFTKENFDLESLDEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFL 121
Query: 779 HAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHG 838
F IA G + K + L +
Sbjct: 122 RGKINFDKIIAFHGMQLEDFEQ------------------------TVQLDDKHVFLSYA 157
Query: 839 EED 841
D
Sbjct: 158 PND 160
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 Length = 305 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 19/158 (12%), Positives = 32/158 (20%), Gaps = 34/158 (21%)
Query: 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 802
+ +G I + S A A + L I G N T
Sbjct: 93 LCTVYHWLQTKG---TQNIGLIAASLSA-RVAYEVISDLEL-SFLITAVGVVNLRDTLEK 147
Query: 803 FQNEDRTLWEATSTYVEM-------------------------SPFMSANKLKKPILLVH 837
D ++ S P++
Sbjct: 148 ALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFT 207
Query: 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875
D+ + ++ C+L L SH
Sbjct: 208 ANNDDW--VKQEEVYDMLAHIRTGH--CKLYSLLGSSH 241
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} Length = 258 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 30/233 (12%), Positives = 53/233 (22%), Gaps = 46/233 (19%)
Query: 628 PHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAA 687
P+P +A+ + S +Y P P + W G
Sbjct: 8 GAPFPAVANFDRSGPYTVSSQSEGPSCRIYRPRDLGQG-GVRHPVILWG-NG-------- 57
Query: 688 GQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAV 747
P+ + + S W + GF + T G G E E
Sbjct: 58 --TGAGPSTYAGLLS----HWASHGFVVAA-AETSNAGTGREMLACLDYLV----RENDT 106
Query: 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED 807
G + ++ GHS G + + + G
Sbjct: 107 PYGTYSGKLNTGRVGTSGHSQGGGGSIMAGQDTR------VRTTAPIQPYTLGLGH---- 156
Query: 808 RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860
S + + P+ L+ G D + +
Sbjct: 157 --------------DSASQRRQQGPMFLMSGGGDTIAFPYLNA-QPVYRRANV 194
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} Length = 223 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 47/263 (17%), Positives = 68/263 (25%), Gaps = 74/263 (28%)
Query: 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQV-----RGSPNEFPRIGS 702
V+L L +P G A G V GS PR
Sbjct: 20 GEVKLKGNLVIPNG------------------------ATGIVLFAHGSGSSRYSPRNRY 55
Query: 703 TSVLLWLARGFAILG----GPTTPIIGEGDEEANDRF----VEQLVACAEAAVEEVVRRG 754
+ +L G A L E + + R + L + A + +
Sbjct: 56 VAEVLQ-QAGLATLLIDLLTQ-----EEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNP 109
Query: 755 VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEAT 814
K+ G S G A P ++R G L
Sbjct: 110 DTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGG---------RPDLAPSALP--- 157
Query: 815 STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874
+K P LL+ G D + AL+ RLVI+P S
Sbjct: 158 -------------HVKAPTLLIVGGYDLPVIAMNED------ALEQLQTSKRLVIIPRAS 198
Query: 875 HGYAARESIMHVLWETDRWLQKY 897
H + ++ V W Y
Sbjct: 199 HLFEEPGALTAVAQLASEWFMHY 221
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* Length = 318 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 3e-04
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 12/94 (12%)
Query: 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGI----------ARSGAYNRTLTPFGFQNED 807
P+ ++V G + G +M A L +F G AR+ Y +
Sbjct: 10 PNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITT 69
Query: 808 RTLWEATSTYVEMSPFMSANKLKKPILLVHGEED 841
T + + +++ AN ++ I + G D
Sbjct: 70 PTANMKSWSGNQIASV--ANLGQRKIYMWTGSSD 101
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} Length = 282 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 4e-04
Identities = 46/264 (17%), Positives = 75/264 (28%), Gaps = 39/264 (14%)
Query: 649 GVQLSATLYLPPGYDPSKDGPLPCLFW------------SYPGEFKSKDAAGQVRGSPNE 696
++ +YLPP + G P L+W S G +S G V +P+
Sbjct: 27 NCKMKFAVYLPPKAE---TGKCPALYWLSGLTCTEQNFISKSGYHQSASEHGLVVIAPDT 83
Query: 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGD-------EEANDRFVEQLVACAEAAVEE 749
PR G I G + G G E+ E +
Sbjct: 84 SPR------------GCNIKGEDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQL 131
Query: 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRT 809
+ P ++++ GHS G P + A + N L P+G +
Sbjct: 132 INANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAPICNPVLCPWGKKAFSGY 191
Query: 810 LWEATSTYVEMSPFMSANKLKK---PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR 866
L S + IL+ G++D + D F A
Sbjct: 192 LGTDQSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLLDGQLLPDNFIAACTEKKIPVV 251
Query: 867 LVILPFESHGYAARESIM--HVLW 888
+ H Y + + H+
Sbjct: 252 FRLQEDYDHSYYFIATFITDHIRH 275
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A Length = 397 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 6e-04
Identities = 24/154 (15%), Positives = 38/154 (24%), Gaps = 20/154 (12%)
Query: 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL 709
S L +P G S GP P L W +P E + V
Sbjct: 61 ATASGVLLIPGGERCS--GPYPLLGWGHPTEALRAQEQAKEIRDAKGD----DPLVTRLA 114
Query: 710 ARGFAI-------LGGPTTPIIG--EGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSK 760
++G+ + LG EA+ + AA + K
Sbjct: 115 SQGYVVVGSDYLGLGKSNYAYHPYLHSASEASAT-----IDAMRAARSVLQHLKTPLSGK 169
Query: 761 IAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794
+ + G+S G +
Sbjct: 170 VMLSGYSQGGHTAMATQREIEAHLSKEFHLVASA 203
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} Length = 306 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 8e-04
Identities = 41/235 (17%), Positives = 61/235 (25%), Gaps = 65/235 (27%)
Query: 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL 709
T+Y P + + S + G+ S + WL
Sbjct: 81 GFGGGTIYYPRE-----NNTYGAIAIS------------------PGYT--GTQSSIAWL 115
Query: 710 ARGFAILG----GPTTPIIGEGDEEANDRFVEQLVACAE--AAVEEVVRRGVAHPSKIAV 763
A G T + D QL A + R S++AV
Sbjct: 116 GERIASHGFVVIAIDTN----TTLDQPDSRARQLNAALDYMLTDASSAVRNRIDASRLAV 171
Query: 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823
GHS G LA I LTP+
Sbjct: 172 MGHSMGGG-GTLRLASQRPDLKAAIP--------LTPWHLNK------------------ 204
Query: 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878
S + P L++ E D + T+ S F+N++ + L SH
Sbjct: 205 -SWRDITVPTLIIGAEYDTIASV-TLHSKPFYNSIPS-PTDKAYLELDGASHFAP 256
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 Length = 615 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 9e-04
Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 25/171 (14%)
Query: 647 KDGVQLSATLYLPPGYDPSKDGPLPCLF-WS-YPGEFKSKDAAGQVRGSPNEFPRIGSTS 704
+DGV+L + LP G P + + Y + SP+ + +
Sbjct: 33 RDGVKLHTVIVLPKG-----AKNAPIVLTRTPY-----DASGRTERLASPHMKDLLSAGD 82
Query: 705 VLLWLARGFAIL----------GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG 754
+++ G+ + G + A ++ +V+
Sbjct: 83 -DVFVEGGYIRVFQDVRGKYGSEGDYVMT--RPLRGPLNPSEVDHATDAWDTIDWLVKNV 139
Query: 755 VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN 805
K+ + G SY F L + + S + + F
Sbjct: 140 SESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWMGDDWFNY 190
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 954 | |||
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.92 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.91 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.9 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.89 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.89 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.89 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.89 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.88 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.88 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.88 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.88 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.88 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.88 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.88 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.88 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.87 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.87 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.87 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.86 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.86 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.86 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.86 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.86 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.86 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.85 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.85 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.85 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.85 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.85 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.85 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.85 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.85 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.84 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.84 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.84 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.84 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.83 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.83 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.83 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.83 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.83 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.83 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.83 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.82 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.82 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.82 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.82 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.82 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.82 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.82 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.81 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.81 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.81 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.81 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.8 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.8 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.8 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.8 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.8 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.8 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.8 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.8 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.8 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.79 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.79 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.79 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.79 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.79 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.78 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.78 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.77 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.77 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.77 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.77 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.77 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.77 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.77 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.76 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.76 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.76 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.76 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.76 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.76 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.76 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.76 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.76 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.75 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.75 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.74 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.74 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.74 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.74 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.74 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.74 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.73 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.73 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.73 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.72 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.72 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.72 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.72 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.72 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.72 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.72 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.71 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.71 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.71 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.71 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.71 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.7 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.7 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.7 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.7 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.7 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.7 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.7 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.69 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.69 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.69 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.69 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.69 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.68 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.68 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.68 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.68 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.68 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.68 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.67 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.67 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.67 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.67 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.67 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.66 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.66 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.66 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.66 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.66 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.66 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.65 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.65 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.65 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.65 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.65 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.65 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.65 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.65 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.65 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.65 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.65 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.64 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.64 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.64 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.64 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.64 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.64 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.64 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.64 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.64 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.63 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.63 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.63 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.63 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.63 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.63 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.63 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.63 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.63 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.62 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.62 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.62 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.61 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.61 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.61 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.61 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.61 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.61 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.61 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.61 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.61 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.61 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.61 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.61 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.61 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.6 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.6 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.6 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.6 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.6 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.59 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.59 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.59 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.59 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.59 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.59 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.59 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.59 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.59 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.59 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.59 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.59 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.59 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.59 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.59 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.59 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.59 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.58 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.58 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.58 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.57 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.57 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.57 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.57 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.56 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.56 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 99.56 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.56 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.56 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.56 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.55 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.55 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.55 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.55 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.55 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.55 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.55 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.54 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.54 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.54 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.54 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.54 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.54 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.54 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.54 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.53 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.53 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.53 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.53 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.53 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.52 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.52 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.52 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.52 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.52 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.52 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.51 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.51 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.51 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.51 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.5 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.5 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.5 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.5 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.5 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.5 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.49 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.49 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.49 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.49 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.49 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.49 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.49 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.49 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.48 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.48 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.48 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.48 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.48 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.48 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.48 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.47 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.47 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.47 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.47 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.46 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.46 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.46 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.46 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.46 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.46 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.45 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.45 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.45 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.45 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.45 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.45 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.44 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.44 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.44 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.44 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.44 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.43 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.43 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.43 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.43 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.43 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.42 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.42 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.41 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.41 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.41 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.41 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.41 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.4 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.39 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.39 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.39 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.39 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.38 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.38 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.38 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.37 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.37 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.37 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.36 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.36 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.36 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.35 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.35 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.34 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.33 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.33 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 99.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.32 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.32 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.29 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.29 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.29 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.29 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.29 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.29 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.27 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.26 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.26 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.26 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.24 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.23 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.23 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.22 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.21 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.21 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.21 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.21 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.2 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.2 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 99.18 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 99.18 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.17 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.16 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 99.15 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 99.15 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.15 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.14 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.13 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.13 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.13 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.13 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 99.12 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.11 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.09 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.09 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.09 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.09 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.09 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.08 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.08 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.08 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.08 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.07 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.06 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.04 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 99.03 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 99.01 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.01 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.0 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 98.98 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.97 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 98.96 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 98.95 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.94 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.91 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.91 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 98.9 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.89 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 98.88 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 98.83 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.83 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 98.81 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 98.79 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 98.79 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 98.78 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.72 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 98.71 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.69 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.69 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 98.69 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.68 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.67 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.67 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 98.66 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.66 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.65 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.65 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.63 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.61 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.6 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.58 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.57 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.56 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.56 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.56 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.55 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.55 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.54 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 98.53 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.51 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.5 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.49 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.48 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.47 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.47 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.47 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.47 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.46 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.44 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 98.44 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 98.42 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.41 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 98.4 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.4 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.39 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.38 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 98.38 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.38 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.37 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.36 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.32 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.31 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.28 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.28 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.27 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.27 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.23 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.23 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.22 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.21 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.21 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.2 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.19 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.19 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.14 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.14 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.13 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.08 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.07 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.07 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.03 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.03 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.02 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.02 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.99 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.99 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.98 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.98 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.94 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.91 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.81 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 97.78 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.77 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.73 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.66 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.64 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.62 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.54 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.53 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.49 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 97.38 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 97.33 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.28 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.27 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.26 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 97.19 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.07 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.07 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.01 |
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-56 Score=542.84 Aligned_cols=630 Identities=14% Similarity=0.089 Sum_probs=443.6
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeee-ecCCC
Q 002194 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEI-QGFPD 187 (954)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~l-t~~~~ 187 (954)
+...+++|||||++|+.. . ..|++|++.+ ++.+.+ .....
T Consensus 17 ~~~~~~~w~~dg~~~~~~-~----------------------------------~~i~~~~~~~----~~~~~~~~~~~~ 57 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ-E----------------------------------NNILVFNAEY----GNSSVFLENSTF 57 (740)
T ss_dssp CCCCCEEECSSSEEEEEE-T----------------------------------TEEEEEETTT----CCEEEEECTTTT
T ss_pred ccccccEECCCCcEEEEc-C----------------------------------CcEEEEECCC----CceEEEEechhh
Confidence 356689999999877765 3 3799999865 444444 22211
Q ss_pred CC-cccc--eeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecC
Q 002194 188 GA-KLNF--VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (954)
Q Consensus 188 ~~-~~~~--~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (954)
.. .+.. ++|||||++|+|..........+...++|++|+++|+.++++..+.. +..++|||||+.|+|+
T Consensus 58 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~-----~~~~~~SPdG~~la~~--- 129 (740)
T 4a5s_A 58 DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNN-----TQWVTWSPVGHKLAYV--- 129 (740)
T ss_dssp TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTT-----EEEEEECSSTTCEEEE---
T ss_pred hhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCc-----ceeeEECCCCCEEEEE---
Confidence 11 2333 89999999999987643222234458899999999999988865543 5689999999999988
Q ss_pred CCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCcc---c------
Q 002194 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAV---Y------ 334 (954)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~~---~------ 334 (954)
...+||++++ +|+.++++..+. +
T Consensus 130 -----------------------------------------------~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~ 162 (740)
T 4a5s_A 130 -----------------------------------------------WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITD 162 (740)
T ss_dssp -----------------------------------------------ETTEEEEESSTTSCCEECCSCCBTTTEEESBCC
T ss_pred -----------------------------------------------ECCeEEEEECCCCceEEEcCCCCccceecCccc
Confidence 2245899998 788888876421 1
Q ss_pred -----------cccccCCCCcEEEEEeecCCcc--ccc------------------ccC---CCCcceEEEeccC---c-
Q 002194 335 -----------TSLDPSPDEKYILISSIHRPYS--FIV------------------PCG---RFPRQVGVWTTDG---I- 376 (954)
Q Consensus 335 -----------~~~~~SpDGk~l~~~s~~~~~~--~~~------------------~~~---~~~~~l~l~d~~g---~- 376 (954)
..+.|||||++|||.+.+...- +.. |.. .-..+|++||+++ +
T Consensus 163 ~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~ 242 (740)
T 4a5s_A 163 WVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 242 (740)
T ss_dssp HHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS
T ss_pred ccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC
Confidence 2478999999999987554310 000 000 1112688999988 6
Q ss_pred --eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCC-------
Q 002194 377 --FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG------- 447 (954)
Q Consensus 377 --~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~------- 447 (954)
..+++..... +.+....+..++|||||+.++++..+. .....|+++++ ++++
T Consensus 243 ~~~~~~l~~~~~-------~~~~~~~~~~~~wspdg~~~~~~~~r~---------~~~~~i~~~d~---~tg~~~~~~~~ 303 (740)
T 4a5s_A 243 NATSIQITAPAS-------MLIGDHYLCDVTWATQERISLQWLRRI---------QNYSVMDICDY---DESSGRWNCLV 303 (740)
T ss_dssp CCCEEEECCCHH-------HHTSCEEEEEEEEEETTEEEEEEEESS---------TTEEEEEEEEE---ETTTTEEEECG
T ss_pred cceEEEecCCcc-------CCCCCeEEEEEEEeCCCeEEEEEeCCC---------CCEEEEEEEEC---CCCccccceeE
Confidence 5555543110 000112245689999999777764432 22347899996 4554
Q ss_pred ceEE--eecccc-----cCceeeccCCceEE-EEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeecc
Q 002194 448 PEIL--HKLDLR-----YGGISWCDDSLALV-YESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTS 519 (954)
Q Consensus 448 ~~~l--~~~~~~-----~~~~~~spDg~~l~-~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~sp 519 (954)
.+.+ ...... ...++|||||+.|+ +.+..++ ..+||+++++++ ..+.++...... . ..+++
T Consensus 304 ~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G-~~~l~~~~~~~~--~~~~lT~g~~~v-~-------~~~~~ 372 (740)
T 4a5s_A 304 ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG-YRHICYFQIDKK--DCTFITKGTWEV-I-------GIEAL 372 (740)
T ss_dssp GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS-CEEEEEEETTCS--SCEESCCSSSCE-E-------EEEEE
T ss_pred EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC-ceEEEEEECCCC--ceEecccCCEEE-E-------EEEEE
Confidence 3333 222222 23799999999998 6655544 588999999985 567777654322 1 12346
Q ss_pred CCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeE-EEeccC-cccccceeEEeccCCccccccccCCE
Q 002194 520 TGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE-RIWESD-KEKYYETTVALMSDQTEGDLYLNQLK 597 (954)
Q Consensus 520 dG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~ 597 (954)
||+.|+|..... +. .....+||.+++++++.+ +|+..- +. . .....++||+|+++
T Consensus 373 d~~~i~f~~~~~------------~~--~~~~~~ly~v~~~g~~~~~~lt~~~~~~----~-----~~~~~~~~S~dg~~ 429 (740)
T 4a5s_A 373 TSDYLYYISNEY------------KG--MPGGRNLYKIQLIDYTKVTCLSCELNPE----R-----CQYYSVSFSKEAKY 429 (740)
T ss_dssp CSSEEEEEESCG------------GG--CTTCBEEEEEETTEEEEEEESSTTTSTT----T-----BCBEEEEECTTSSE
T ss_pred eCCEEEEEEecC------------CC--CCceeEEEEEECCCCCcceeeccccCCC----C-----CceEEEEECCCCCE
Confidence 788888877320 01 123568999999987765 566331 00 0 00113679999999
Q ss_pred EEEEEecCCCCceEEEEECCCCceeEeecCCCC----CCCcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEE
Q 002194 598 ILTSKESKTENTQYYIQSWPDKKSCQITDFPHP----YPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCL 673 (954)
Q Consensus 598 l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~~~----~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~v 673 (954)
+++..+++. |+.+++++..+++..++...+.. +........+.+++ ..+|.++++++++|+++++.+ ++|+|
T Consensus 430 ~~~~~s~~~-~p~~~l~~~~~~~~~~~l~~n~~~~~~~~~~~~~~~~~~~~-~~dg~~l~~~~~~P~~~~~~~--~~P~v 505 (740)
T 4a5s_A 430 YQLRCSGPG-LPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFI-ILNETKFWYQMILPPHFDKSK--KYPLL 505 (740)
T ss_dssp EEEEECSBS-SCEEEEEETTTTEEEEEEECCHHHHHHHTTEECCEEEEEEE-EETTEEEEEEEEECTTCCTTS--CEEEE
T ss_pred EEEEeCCCC-CCEEEEEECCCCcEEEEeccChhhhhhhhhccCCccEEEEE-ccCCeEEEEEEEeCCCCCCCC--CccEE
Confidence 999999987 78899999888877676655432 22233344677777 789999999999999887654 59999
Q ss_pred EEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHH
Q 002194 674 FWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEE 749 (954)
Q Consensus 674 v~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~ 749 (954)
|++|||+..... . ..| ...+...+++ +||+|+++++++..++|..+.. ..+....++|+.+++++
T Consensus 506 v~~HGg~~~~~~-----~---~~~---~~~~~~~l~~~~G~~Vv~~D~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~i~~ 574 (740)
T 4a5s_A 506 LDVYAGPCSQKA-----D---TVF---RLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQ 574 (740)
T ss_dssp EECCCCTTCCCC-----C---CCC---CCSHHHHHHHTTCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHH
T ss_pred EEECCCCccccc-----c---ccc---CcCHHHHHHhcCCeEEEEEcCCCCCcCChhHHHHHHhhhCcccHHHHHHHHHH
Confidence 999998643210 1 111 1123455664 9999999888776665554322 23344678999999999
Q ss_pred HHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccc-cc--hhhhcHHHHHhcCccccc
Q 002194 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE-DR--TLWEATSTYVEMSPFMSA 826 (954)
Q Consensus 750 l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~sp~~~~ 826 (954)
|.+++.+|++||+|+||||||++|+++++++|++|+++|+++|+.++......+... .. ..+++.+.|...+|+..+
T Consensus 575 l~~~~~~d~~ri~i~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 654 (740)
T 4a5s_A 575 FSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRA 654 (740)
T ss_dssp HHTSTTEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBHHHHHHHHCCSSTTTTHHHHHHSCSGGGG
T ss_pred HHhcCCcCCccEEEEEECHHHHHHHHHHHhCCCceeEEEEcCCccchHHhhhHHHHHHcCCCCccccHHHHHhCCHHHHH
Confidence 998888999999999999999999999999999999999999988754332111110 11 125667788899999999
Q ss_pred CCCCC-CEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcccCC
Q 002194 827 NKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 827 ~~~~~-P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
+++++ |+||+||++|.+|| +.++.+++++|+..++++++++||+++|.+...+...++++.+.+||++++....
T Consensus 655 ~~i~~~P~Lii~G~~D~~v~--~~~~~~l~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 729 (740)
T 4a5s_A 655 ENFKQVEYLLIHGTADDNVH--FQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFSLPA 729 (740)
T ss_dssp GGGGGSEEEEEEETTCSSSC--THHHHHHHHHHHHTTCCCEEEEETTCCTTCCSHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred hcCCCCcEEEEEcCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCcCCCCccHHHHHHHHHHHHHHHcCCCC
Confidence 99997 99999999999999 9999999999999999999999999999986677788899999999999997543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-54 Score=528.93 Aligned_cols=628 Identities=17% Similarity=0.218 Sum_probs=443.2
Q ss_pred hhHHHhhc-----CCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCC
Q 002194 100 PEIREIVD-----APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDG 174 (954)
Q Consensus 100 ~~~~~~~~-----~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g 174 (954)
..+++++. ...+..++|||||++|+|.+.. +++... ..|++|++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~----------------------d~~~~~-----~~i~~~d~~~-- 73 (741)
T 2ecf_A 23 LTLEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGK----------------------DSDRNQ-----LDLWSYDIGS-- 73 (741)
T ss_dssp CCHHHHTSSSCTTCCCCEEEEECTTSSEEEEEECC----------------------SSCTTE-----EEEEEEETTT--
T ss_pred ccHHHHhccCCcCCCCCCCceEecCCCEEEEEecc----------------------CCCCcc-----cEEEEEECCC--
Confidence 34556664 3457789999999999999862 110001 3799999854
Q ss_pred CCCceeeeecCCCC-----------------------CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCC--
Q 002194 175 KLGQEIEIQGFPDG-----------------------AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-- 229 (954)
Q Consensus 175 ~~~~~~~lt~~~~~-----------------------~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g-- 229 (954)
++.+++...... ..+..++|||||++|+|.. ...||++|++++
T Consensus 74 --g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~----------~~~i~~~d~~~~~~ 141 (741)
T 2ecf_A 74 --GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPL----------GGELYLYDLKQEGK 141 (741)
T ss_dssp --CCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEE----------TTEEEEEESSSCST
T ss_pred --CceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEe----------CCcEEEEECCCCCc
Confidence 455555422111 1268899999999999976 278999999998
Q ss_pred -ceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccc
Q 002194 230 -KARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLF 308 (954)
Q Consensus 230 -~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~ 308 (954)
+.++++..... +..++|||||++|++.
T Consensus 142 ~~~~~l~~~~~~-----~~~~~~SPDG~~la~~----------------------------------------------- 169 (741)
T 2ecf_A 142 AAVRQLTHGEGF-----ATDAKLSPKGGFVSFI----------------------------------------------- 169 (741)
T ss_dssp TSCCBCCCSSSC-----EEEEEECTTSSEEEEE-----------------------------------------------
T ss_pred ceEEEcccCCcc-----cccccCCCCCCEEEEE-----------------------------------------------
Confidence 77788765443 6689999999999987
Q ss_pred cccccceEEEEEe-CCceeEcCCC-cc-----------------ccccccCCCCcEEEEEeecCCccc------------
Q 002194 309 DYYATTQLVLVSL-DGTVKEIGPP-AV-----------------YTSLDPSPDEKYILISSIHRPYSF------------ 357 (954)
Q Consensus 309 ~~~~~~~l~~~~~-~G~~~~l~~~-~~-----------------~~~~~~SpDGk~l~~~s~~~~~~~------------ 357 (954)
...+||++++ +|+.++++.. .. ...++|||||++|++.+.+.....
T Consensus 170 ---~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~ 246 (741)
T 2ecf_A 170 ---RGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRT 246 (741)
T ss_dssp ---ETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCE
T ss_pred ---eCCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcc
Confidence 1235999999 7888777764 21 477999999999999876532100
Q ss_pred -----cccc-C--CCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002194 358 -----IVPC-G--RFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (954)
Q Consensus 358 -----~~~~-~--~~~~~l~l~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (954)
..|. + .....|++||+++ ++.+.+..... ....+..++| |||+.|++......
T Consensus 247 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~~-pDg~~l~~~~~~~~------- 308 (741)
T 2ecf_A 247 DVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKE----------QDIYLARVNW-RDPQHLSFQRQSRD------- 308 (741)
T ss_dssp EEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSC----------SSEEEEEEEE-EETTEEEEEEEETT-------
T ss_pred cceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCC----------cceEEEEEEe-CCCCEEEEEEeccc-------
Confidence 0000 0 0112788999988 77666543210 1123457899 99999988733211
Q ss_pred ccCCCeEEEEecCCCCCCCceEEeeccc-----ccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCC
Q 002194 429 VTPRDIIYTQQAEPVQGEGPEILHKLDL-----RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (954)
Q Consensus 429 ~~~~~~l~~~~~~~~~g~~~~~l~~~~~-----~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 503 (954)
.....|+++++ .+++.+.+..... .+..++|||||+ +++.+..++ ..+||.++.+++ ...++....
T Consensus 309 -~~~~~i~~~d~---~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g-~~~l~~~~~~~~---~~~l~~~~~ 379 (741)
T 2ecf_A 309 -QKKLDLVEVTL---ASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTG-FQHLYRIDSKGK---AAALTHGNW 379 (741)
T ss_dssp -SSEEEEEEEET---TTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTS-SCEEEEECSSSC---EEESCCSSS
T ss_pred -CCeEEEEEEEC---CCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCC-ccEEEEEcCCCC---eeeeeecce
Confidence 22457999996 5666665543322 346899999999 666655544 378999998763 344443321
Q ss_pred CCccCCCCCCCe-eeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEe
Q 002194 504 EDVYSDPGSPMM-RRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVAL 582 (954)
Q Consensus 504 ~~~~~~~~~~~~-~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 582 (954)
.+.. + .|||||++|+|..... + ....+||.++++++..++|+...+ +.
T Consensus 380 -~v~~------~~~~s~dg~~l~~~~~~~------------~----~~~~~l~~~~~~g~~~~~l~~~~~------~~-- 428 (741)
T 2ecf_A 380 -SVDE------LLAVDEKAGLAYFRAGIE------------S----ARESQIYAVPLQGGQPQRLSKAPG------MH-- 428 (741)
T ss_dssp -CEEE------EEEEETTTTEEEEEECSS------------C----TTCBEEEEEETTCCCCEECCCSCS------EE--
T ss_pred -EEEe------EeEEeCCCCEEEEEEeCC------------C----CceEEEEEEEcCCCCeeecccCCC------ce--
Confidence 1111 3 5999999998887311 0 013458888887777777776332 11
Q ss_pred ccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEeecCCC-----CCCCc--CCCceEEEEEEcCCC-eEEEE
Q 002194 583 MSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPH-----PYPQL--ASLQKELIKYQRKDG-VQLSA 654 (954)
Q Consensus 583 ~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~~-----~~~~~--~~~~~~~~~~~~~~g-~~l~~ 654 (954)
..+|||||+++++..++...|.++++++..++..+.|+..+. .+... .....+.+++++.+| .++++
T Consensus 429 -----~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 503 (741)
T 2ecf_A 429 -----SASFARNASVYVDSWSNNSTPPQIELFRANGEKIATLVENDLADPKHPYARYREAQRPVEFGTLTAADGKTPLNY 503 (741)
T ss_dssp -----EEEECTTSSEEEEEEEETTEEEEEEEEETTSCEEECSSCCCSSSTTSTTHHHHTTCCCEEEEEEECTTSSCEEEE
T ss_pred -----EEEECCCCCEEEEEecCCCCCCeEEEEEcCCCeEEEeccCcccccccchhhhhccCCCcEEEEEEcCCCCEEEEE
Confidence 257999999999999999999999999987666666664322 12223 334688999999999 99999
Q ss_pred EEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCccc-HHHHHHHHCCcEEEEcCCCCCCCCCCcccc-
Q 002194 655 TLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS-TSVLLWLARGFAILGGPTTPIIGEGDEEAN- 732 (954)
Q Consensus 655 ~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~G~~V~~~~~~~~~G~G~~~~~- 732 (954)
+++.|+++++.+ +.|+||++||++..... ...|..... ..+..|+++||+|+.+++++..+.|..+..
T Consensus 504 ~~~~P~~~~~~~--~~p~vv~~hG~~~~~~~--------~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~s~~~~~~~ 573 (741)
T 2ecf_A 504 SVIKPAGFDPAK--RYPVAVYVYGGPASQTV--------TDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGA 573 (741)
T ss_dssp EEECCSSCCTTS--CEEEEEECCCSTTCCSC--------SSCCCCSHHHHHHHHHHHTTCEEEEECCTTCSSSCHHHHHT
T ss_pred EEEeCCCCCCCC--CcCEEEEEcCCCCcccc--------cccccccchhHHHHHHHhCCCEEEEEecCCCCCCChhhhHH
Confidence 999998765443 48999999998633210 011211100 357788999999999666544433322111
Q ss_pred --hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCcc-ccch
Q 002194 733 --DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN-EDRT 809 (954)
Q Consensus 733 --~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~-~~~~ 809 (954)
..+....++|+.+++++|.+++.+|+++|+|+||||||++++.+++++|++|+++|+++|+.++......+.. ....
T Consensus 574 ~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 653 (741)
T 2ecf_A 574 LYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAPVTDWGLYDSHYTERYMDL 653 (741)
T ss_dssp TTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCGGGSBHHHHHHHHCC
T ss_pred HhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEEEChHHHHHHHHHHhCCCceEEEEEcCCCcchhhhccccchhhcCC
Confidence 1223456899999999999998889999999999999999999999999999999999998764322111110 0123
Q ss_pred hhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHH
Q 002194 810 LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889 (954)
Q Consensus 810 ~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~ 889 (954)
++...+.|...+|+..+.++++|+||+||++|.+|| +.++.+++++|+..+++++++++|+++|.+.... ..++++.
T Consensus 654 ~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~-~~~~~~~ 730 (741)
T 2ecf_A 654 PARNDAGYREARVLTHIEGLRSPLLLIHGMADDNVL--FTNSTSLMSALQKRGQPFELMTYPGAKHGLSGAD-ALHRYRV 730 (741)
T ss_dssp TGGGHHHHHHHCSGGGGGGCCSCEEEEEETTCSSSC--THHHHHHHHHHHHTTCCCEEEEETTCCSSCCHHH-HHHHHHH
T ss_pred cccChhhhhhcCHHHHHhhCCCCEEEEccCCCCCCC--HHHHHHHHHHHHHCCCceEEEEECCCCCCCCCCc-hhHHHHH
Confidence 345567788889999999999999999999999998 9999999999999999999999999999986333 3788899
Q ss_pred HHHHHHHhcc
Q 002194 890 TDRWLQKYCV 899 (954)
Q Consensus 890 i~~fl~~~l~ 899 (954)
+.+||+++|+
T Consensus 731 i~~fl~~~l~ 740 (741)
T 2ecf_A 731 AEAFLGRCLK 740 (741)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999999985
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-53 Score=521.76 Aligned_cols=630 Identities=12% Similarity=0.066 Sum_probs=422.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
....++|||||++++ ...+ +.|++|++.+ ++..++.......
T Consensus 18 ~~~~~~~spdg~~~~-~~~d---------------------------------g~i~~~d~~~----g~~~~~~~~~~~~ 59 (723)
T 1xfd_A 18 HDPEAKWISDTEFIY-REQK---------------------------------GTVRLWNVET----NTSTVLIEGKKIE 59 (723)
T ss_dssp CCCCCCBSSSSCBCC-CCSS---------------------------------SCEEEBCGGG----CCCEEEECTTTTT
T ss_pred cccccEEcCCCcEEE-EeCC---------------------------------CCEEEEECCC----CcEEEEecccccc
Confidence 467899999999554 3332 3789999864 4444443211111
Q ss_pred --cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 190 --KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 190 --~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
.+..++|||||++|+|..........+....||++|+++++.++++..... ...+..++|||||+.|+|.
T Consensus 60 ~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~--~~~~~~~~~SPdG~~la~~------ 131 (723)
T 1xfd_A 60 SLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS--NAKLQYAGWGPKGQQLIFI------ 131 (723)
T ss_dssp TTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC--SCCCSBCCBCSSTTCEEEE------
T ss_pred ccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccc--cccccccEECCCCCEEEEE------
Confidence 378899999999999987432111122347899999999988777654321 1114579999999999987
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC--ccc----------
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVY---------- 334 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~--~~~---------- 334 (954)
...+||++++ +|+.++++.. ..+
T Consensus 132 --------------------------------------------~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~ 167 (723)
T 1xfd_A 132 --------------------------------------------FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY 167 (723)
T ss_dssp --------------------------------------------ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred --------------------------------------------ECCeEEEEECCCCceEEEecCCCCCceECcccceeE
Confidence 1235889998 7777777654 222
Q ss_pred --------cccccCCCCcEEEEEeecCCcc--ccc----------------c-cC--CCCcceEEEeccCceE-EEeccC
Q 002194 335 --------TSLDPSPDEKYILISSIHRPYS--FIV----------------P-CG--RFPRQVGVWTTDGIFV-RELCDL 384 (954)
Q Consensus 335 --------~~~~~SpDGk~l~~~s~~~~~~--~~~----------------~-~~--~~~~~l~l~d~~g~~~-~~l~~~ 384 (954)
..++|||||++|+|.+.+.... +.. + .+ .....+++||+++++. +.+...
T Consensus 168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC
Confidence 5799999999999988653210 000 0 00 1123789999987763 555432
Q ss_pred CCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec--cccc----
Q 002194 385 PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRY---- 458 (954)
Q Consensus 385 ~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--~~~~---- 458 (954)
... ......+..++|||||+.++++.... .....|+++++ .+++...+... ...+
T Consensus 248 ~~~-------~~~~~~~~~~~~SpDg~~l~~~~~~~---------~~~~~i~~~d~---~~g~~~~~~~~~~~~~~~~~~ 308 (723)
T 1xfd_A 248 DDP-------RMREYYITMVKWATSTKVAVTWLNRA---------QNVSILTLCDA---TTGVCTKKHEDESEAWLHRQN 308 (723)
T ss_dssp CCG-------GGSSEEEEEEEESSSSEEEEEEEETT---------SCEEEEEEEET---TTCCEEEEEEEECSSCCCCCC
T ss_pred ccC-------CCccceeEEEEEeCCCeEEEEEEcCC---------CCeEEEEEEeC---CCCcceEEEEeccCCEEeccC
Confidence 100 00112345789999999776653321 22457899996 56666555322 2222
Q ss_pred CceeeccCCceEEEE-Eeccc---cceEEEEEc-CCCCCCC---cEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEee
Q 002194 459 GGISWCDDSLALVYE-SWYKT---RRTRTWVIS-PGSKDVA---PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (954)
Q Consensus 459 ~~~~~spDg~~l~~~-~~~~~---~~~~l~~~d-~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~ 530 (954)
..++|||||+.|++. ...++ ...+||+++ .+++ . .+.++...... .. .++|||||++|+|....
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~~~~~l~~~~~~~-~~-----~~~~spdg~~l~~~~~~ 380 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS--SNDNIQSITSGDWDV-TK-----ILAYDEKGNKIYFLSTE 380 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS--SSCCCCBSCCSSSCE-EE-----EEEEETTTTEEEEEESS
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCC--CccceeEeecCCeEE-Ee-----eeEEcCCCCEEEEEEcC
Confidence 379999999999997 44332 146899999 4553 3 34444322111 11 15799999999988721
Q ss_pred ccCCCcEEEEecCCCCCCCCCCeEEEEECCCC-CeEEEecc--CcccccceeEEeccCCccccccccCCEEEEEEecCCC
Q 002194 531 ENDEGTYILLNGNGATPEGNIPFLDLFDINTG-SKERIWES--DKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTE 607 (954)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~ 607 (954)
. .....+||.++++++ +.+.|+.. ... .....+|||||+++++..+++..
T Consensus 381 ~----------------~~~~~~l~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~spdg~~l~~~~~~~~~ 433 (723)
T 1xfd_A 381 D----------------LPRRRQLYSANTVGNFNRQCLSCDLVENC-----------TYFSASFSHSMDFFLLKCEGPGV 433 (723)
T ss_dssp S----------------CTTCCEEEEECSSTTCCCBCSSTTSSSSC-----------CCCEEEECTTSSEEEEECCSSSS
T ss_pred C----------------CCcceEEEEEeCCCCCCcceecccccCCC-----------CeEEEEECCCCCEEEEEccCCCC
Confidence 1 012346888887765 44455432 110 01135799999999999999998
Q ss_pred CceEEEEECCCCceeEeecCCCC----CCCcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcC
Q 002194 608 NTQYYIQSWPDKKSCQITDFPHP----YPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKS 683 (954)
Q Consensus 608 p~~l~~~~~~~g~~~~Lt~~~~~----~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~ 683 (954)
|..++. +..+++...+...+.. +........+.+++++.+| ++++++++|+++++.+ ++|+||++||++...
T Consensus 434 p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~P~~~~~~~--~~p~vv~~HG~~~~~ 509 (723)
T 1xfd_A 434 PMVTVH-NTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEIDDY-NLPMQILKPATFTDTT--HYPLLLVVDGTPGSQ 509 (723)
T ss_dssp CCEEEE-ETTTCCEEEEEECCHHHHHHHHTSCCCBCCBCCEEETTE-EECCBEEBCSSCCSSS--CEEEEEECCCCTTCC
T ss_pred CeEEEE-ECCCCCEEEEeccChhhhhhhhhccCCCceEEEEEcCCc-eEEEEEEeCCCCCCCC--ccCEEEEEcCCCCcc
Confidence 876654 6555544333222211 1223334567888898899 9999999999875544 599999999986431
Q ss_pred cccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCccc---chhhHHHHHHHHHHHHHHHHHcCCCCCCc
Q 002194 684 KDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSK 760 (954)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~av~~l~~~~~~d~~r 760 (954)
.. . ..|. .......++++||+|+++++++..++|..+. ...+....++|+.+++++|.+++.+|++|
T Consensus 510 ~~-----~---~~~~--~~~~~~~l~~~G~~vv~~d~rG~g~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~ 579 (723)
T 1xfd_A 510 SV-----A---EKFE--VSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTR 579 (723)
T ss_dssp CC-----C---CCCC--CSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEE
T ss_pred cc-----C---cccc--ccHHHHHhhcCCEEEEEECCCCCccccHHHHHHHHhccCcccHHHHHHHHHHHHhCCCcChhh
Confidence 10 0 1111 0123445667999999977766555443321 12233467899999999999988889999
Q ss_pred EEEEeeChHHHHHHHHHHhC----CCcccEEEEeccCCCCCCCCCCCccc-cchhhhcHHHHHhcCcccccCCCC-CCEE
Q 002194 761 IAVGGHSYGAFMTANLLAHA----PHLFCCGIARSGAYNRTLTPFGFQNE-DRTLWEATSTYVEMSPFMSANKLK-KPIL 834 (954)
Q Consensus 761 i~l~G~S~GG~~a~~~a~~~----p~~~~a~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sp~~~~~~~~-~P~L 834 (954)
|+|+||||||++++.++.++ |++|+++|+.+|+.++......+... ...++...+.+...++...+.+++ +|+|
T Consensus 580 i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l 659 (723)
T 1xfd_A 580 VAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFL 659 (723)
T ss_dssp EEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSBHHHHHHHHCCCSSCCSSTTTTCTHHHHTSCCSCEEE
T ss_pred EEEEEECHHHHHHHHHHHhccccCCCeEEEEEEccCCcchHHhhhhccHhhcCCccCChhHHHhcChhhHHhhcCCCCEE
Confidence 99999999999999999999 99999999999987754321111000 011222333455667778888999 7999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 835 LVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 835 ii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
|+||++|.+|| +.++.+++++|+..++++++++||+++|.+...+....+++.+.+||+++|+
T Consensus 660 ii~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 722 (723)
T 1xfd_A 660 IIHPTADEKIH--FQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVECFR 722 (723)
T ss_dssp EEEETTCSSSC--HHHHHHHHHHHHHTTCCCEEEEETTCCSSCCCHHHHHHHHHHHHHHHTTTTC
T ss_pred EEEeCCCCCcC--HhHHHHHHHHHHHCCCCeEEEEECCCCcccccCcchHHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999999999999999999999986566778889999999998864
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-51 Score=504.89 Aligned_cols=624 Identities=14% Similarity=0.079 Sum_probs=424.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCC-
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG- 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~- 188 (954)
....++|||||+ +++...+ ++|++|++.+ ++.+++......
T Consensus 17 ~~~~~~~s~dg~-~~~~~~d---------------------------------~~i~~~~~~~----g~~~~~~~~~~~~ 58 (719)
T 1z68_A 17 KTFFPNWISGQE-YLHQSAD---------------------------------NNIVLYNIET----GQSYTILSNRTMK 58 (719)
T ss_dssp CCCCCEESSSSE-EEEECTT---------------------------------SCEEEEESSS----CCEEEEECHHHHH
T ss_pred CCCccEECCCCe-EEEEcCC---------------------------------CCEEEEEcCC----CcEEEEEcccccc
Confidence 455889999995 4444433 4799999854 555666421100
Q ss_pred -CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce---eecccCCCccccccccceeEecCCeEEEEEecC
Q 002194 189 -AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA---RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (954)
Q Consensus 189 -~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~---~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (954)
..+..++|||||++|+|..........++...||++|+++|+. ++++ .. +..++|||||+.|+|+
T Consensus 59 ~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~---~~-----~~~~~~SPDG~~la~~--- 127 (719)
T 1z68_A 59 SVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP---RP-----IQYLCWSPVGSKLAYV--- 127 (719)
T ss_dssp TTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC---SS-----BCCEEECSSTTCEEEE---
T ss_pred ccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC---cc-----cccceECCCCCEEEEE---
Confidence 0278899999999999987532100112357899999999987 5553 21 5689999999999987
Q ss_pred CCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCc--c--------
Q 002194 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPA--V-------- 333 (954)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~--~-------- 333 (954)
...+|+++++ +|+.++++..+ .
T Consensus 128 -----------------------------------------------~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~ 160 (719)
T 1z68_A 128 -----------------------------------------------YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPD 160 (719)
T ss_dssp -----------------------------------------------ETTEEEEESSTTSCCEECCCCCBTTTEEESSCC
T ss_pred -----------------------------------------------ECCeEEEEeCCCCCcEEEecCCCcCCeEccccc
Confidence 1235888888 77777776431 1
Q ss_pred ----------ccccccCCCCcEEEEEeecCCccc------------------cccc---CCCCcceEEEeccCceEE---
Q 002194 334 ----------YTSLDPSPDEKYILISSIHRPYSF------------------IVPC---GRFPRQVGVWTTDGIFVR--- 379 (954)
Q Consensus 334 ----------~~~~~~SpDGk~l~~~s~~~~~~~------------------~~~~---~~~~~~l~l~d~~g~~~~--- 379 (954)
...++|||||++|+|.+.+..... ..|. .....++++||+++++..
T Consensus 161 ~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~ 240 (719)
T 1z68_A 161 WVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQ 240 (719)
T ss_dssp HHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCE
T ss_pred ceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcccee
Confidence 147999999999999886532100 0000 011237889999876542
Q ss_pred EeccCCCcccCCccccccccCccceeeccCCCCceEE-EEeccCCCccccccCCCeEEEEe----cCCCCCCCceEEe--
Q 002194 380 ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW-AETQDGGDAKVEVTPRDIIYTQQ----AEPVQGEGPEILH-- 452 (954)
Q Consensus 380 ~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~-~~~~~~~~~~~~~~~~~~l~~~~----~~~~~g~~~~~l~-- 452 (954)
.+... ..+.+....+..++|||||+ +++. .+.. .....|++++ + .+++.+.+.
T Consensus 241 ~~~~~-------~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~---------~~~~~l~~~d~~~~~---~~g~~~~~~~~ 300 (719)
T 1z68_A 241 EVPVP-------AMIASSDYYFSWLTWVTDER-VCLQWLKRV---------QNVSVLSICDFREDW---QTWDCPKTQEH 300 (719)
T ss_dssp ECCCC-------HHHHTSCEEEEEEEESSSSE-EEEEEEESS---------TTEEEEEEEEECSSS---SSEECCGGGEE
T ss_pred EccCC-------ccCCCCcceEEEeEEeCCCe-EEEEEeccc---------cCeEEEEEEcccCCC---CCCceEEEEec
Confidence 22210 00001112346789999976 4444 2211 1234688998 5 444444443
Q ss_pred ---ecccccC-----ceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEE
Q 002194 453 ---KLDLRYG-----GISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYV 524 (954)
Q Consensus 453 ---~~~~~~~-----~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l 524 (954)
.....+. .+.|||||+.|++.........+||.++++++ +.+.++..... +.. +.++ ||++|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~--~~~~lt~~~~~-v~~------~~~~-d~~~i 370 (719)
T 1z68_A 301 IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE--NAIQITSGKWE-AIN------IFRV-TQDSL 370 (719)
T ss_dssp EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST--TCEECSCSSSC-EEE------EEEE-CSSEE
T ss_pred ccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC--ceEecccCceE-EEE------EEEE-eCCEE
Confidence 2333344 78999999999886544334578999999885 45555543221 221 4456 88988
Q ss_pred EEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCC--CeEEEeccCcccccceeEEeccCCccccccccCCEEEEEE
Q 002194 525 IAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTG--SKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSK 602 (954)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 602 (954)
+|..... .......+||.++++++ +.++|+..-.. .. . .....+||+|++++++..
T Consensus 371 ~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~---~~-~----~~~~~~~s~dg~~l~~~~ 428 (719)
T 1z68_A 371 FYSSNEF--------------EEYPGRRNIYRISIGSYPPSKKCVTCHLRK---ER-C----QYYTASFSDYAKYYALVC 428 (719)
T ss_dssp EEEESCG--------------GGCTTCBEEEEEECSSSSCCEEESSTTTTT---TT-B----CBEEEEECGGGSSEEEEE
T ss_pred EEEEecC--------------CCCCceEEEEEEeCCCCCCCceeccCccCC---CC-C----ceEEEEECCCCCEEEEEc
Confidence 8887320 00012356899998766 45666532100 00 0 001256899999999998
Q ss_pred ecCCCCceEEEEECCCCceeEeecCCCC----CCCcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECC
Q 002194 603 ESKTENTQYYIQSWPDKKSCQITDFPHP----YPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYP 678 (954)
Q Consensus 603 ~s~~~p~~l~~~~~~~g~~~~Lt~~~~~----~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hG 678 (954)
+++..| .++++++.+++..+++..+.. +........+.+++++.+ .++++++++|+++++.+ ++|+||++||
T Consensus 429 s~~~~p-~~~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~P~~~~~~~--~~p~vl~~hG 504 (719)
T 1z68_A 429 YGPGIP-ISTLHDGRTDQEIKILEENKELENALKNIQLPKEEIKKLEVDE-ITLWYKMILPPQFDRSK--KYPLLIQVYG 504 (719)
T ss_dssp CCBSSC-EEEEECSSSCCEEEEEECCHHHHHHTTSBCCCEEEEEEEEETT-EEEEEEEEECTTCCSSS--CEEEEEEECC
T ss_pred CCCCCC-eEEEEECCCCCEEEEeecchhhhhhhccccCCceEEEEEecCC-eEEEEEEEeCCCCCCCC--CccEEEEECC
Confidence 888877 688999888887777665542 233444467889999888 99999999999875443 5899999999
Q ss_pred CCCcCcccCccccCCCCCCCCcccHHHHHHH-HCCcEEEEcCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcC
Q 002194 679 GEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRG 754 (954)
Q Consensus 679 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~ 754 (954)
++..... ...| ...+...++ ++||+|+.+++++..+.|..+.. ..+....++|+.+++++|.+++
T Consensus 505 ~~~~~~~--------~~~~---~~~~~~~l~~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~ 573 (719)
T 1z68_A 505 GPCSQSV--------RSVF---AVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMG 573 (719)
T ss_dssp CTTBCCC--------CCCC---CCCHHHHHHHTTCCEEEEEECTTBSSSCHHHHGGGTTCTTHHHHHHHHHHHHHHHTTS
T ss_pred CCCcCcc--------cccc---hhhHHHHHHhcCCeEEEEEcCCCCCCCchhhHHHHhhccCcccHHHHHHHHHHHHhcC
Confidence 8643210 0111 112344454 69999999777655544433211 2234567899999999999988
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccc-cch--hhhcHHHHHhcCcccccCCCCC
Q 002194 755 VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE-DRT--LWEATSTYVEMSPFMSANKLKK 831 (954)
Q Consensus 755 ~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~sp~~~~~~~~~ 831 (954)
.+|++||+|+||||||++|+.++.++|++|+++|+++|+.++......+... .+. .++..+.|...+|...+.++++
T Consensus 574 ~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (719)
T 1z68_A 574 FIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYASVYTERFMGLPTKDDNLEHYKNSTVMARAEYFRN 653 (719)
T ss_dssp CEEEEEEEEEEETHHHHHHHHHHTTSSSCCSEEEEESCCCCTTTSBHHHHHHHHCCSSTTTTHHHHHHTCSGGGGGGGTT
T ss_pred CCCCceEEEEEECHHHHHHHHHHHhCCCceEEEEEcCCccChHHhccccchhhcCCcccccchhhhhhCCHhHHHhcCCC
Confidence 8999999999999999999999999999999999999988754321111000 011 1344566888889899999998
Q ss_pred -CEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 832 -PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 832 -P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
|+||+||++|.+|| +.++.+++++|+..++++++++||+++|.+ ..+....+++.+.+||+++|+
T Consensus 654 ~P~li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~-~~~~~~~~~~~i~~fl~~~l~ 719 (719)
T 1z68_A 654 VDYLLIHGTADDNVH--FQNSAQIAKALVNAQVDFQAMWYSDQNHGL-SGLSTNHLYTHMTHFLKQCFS 719 (719)
T ss_dssp SEEEEEEETTCSSSC--THHHHHHHHHHHHTTCCCEEEEETTCCTTC-CTHHHHHHHHHHHHHHHHHHC
T ss_pred CcEEEEEeCCCCCcC--HHHHHHHHHHHHHCCCceEEEEECcCCCCC-CcccHHHHHHHHHHHHHHhhC
Confidence 89999999999999 999999999999999999999999999998 455678889999999999873
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-51 Score=498.61 Aligned_cols=569 Identities=14% Similarity=0.104 Sum_probs=406.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..++|||| +.|+|.. ...||++|+++++.++++..... +..++|||||+.|+++
T Consensus 83 ~v~~~~~spd-~~~~~~~----------~~~i~~~d~~~~~~~~l~~~~~~-----~~~~~~SpdG~~la~~-------- 138 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLFT----------QGGLVGFDMLARKVTYLFDTNEE-----TASLDFSPVGDRVAYV-------- 138 (706)
T ss_dssp CCEEEEETTT-TEEEEEE----------TTEEEEEETTTTEEEEEECCTTC-----CTTCEECTTSSEEEEE--------
T ss_pred CceeEEECCC-CeEEEEE----------CCEEEEEECCCCceEEccCCccc-----ccCCcCCCCCCEEEEE--------
Confidence 4778999999 8899975 37999999999988888765443 6689999999999987
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C-----CceeEcCCC-cc---------
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D-----GTVKEIGPP-AV--------- 333 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~-----G~~~~l~~~-~~--------- 333 (954)
...+|+++++ + |+.++++.. ..
T Consensus 139 ------------------------------------------~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 176 (706)
T 2z3z_A 139 ------------------------------------------RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH 176 (706)
T ss_dssp ------------------------------------------ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred ------------------------------------------ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence 2246899999 7 887777665 22
Q ss_pred ------ccccccCCCCcEEEEEeecCCcccc-----------------ccc---CCCCcceEEEeccCceEEEeccCCCc
Q 002194 334 ------YTSLDPSPDEKYILISSIHRPYSFI-----------------VPC---GRFPRQVGVWTTDGIFVRELCDLPLA 387 (954)
Q Consensus 334 ------~~~~~~SpDGk~l~~~s~~~~~~~~-----------------~~~---~~~~~~l~l~d~~g~~~~~l~~~~~~ 387 (954)
+..+.|||||++|++.+.+...... .|. ......|++||+++++.+.+......
T Consensus 177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 256 (706)
T 2z3z_A 177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK 256 (706)
T ss_dssp GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence 3789999999999998743210000 000 01224799999998877666532111
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCC-CceEEeec-cc----ccCce
Q 002194 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-GPEILHKL-DL----RYGGI 461 (954)
Q Consensus 388 ~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-~~~~l~~~-~~----~~~~~ 461 (954)
...+..++|||||+.|++..... . .....|+++++ .++ ..+.+... .. .+..+
T Consensus 257 ----------~~~~~~~~~spdg~~l~~~~~~~--~------~~~~~v~~~d~---~~g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 257 ----------EKFLTNLSWSPDENILYVAEVNR--A------QNECKVNAYDA---ETGRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp ----------TCEEEEEEECTTSSEEEEEEECT--T------SCEEEEEEEET---TTCCEEEEEEEEECSSCCCCCSCC
T ss_pred ----------ceeEeeEEEECCCCEEEEEEeCC--C------CCeeEEEEEEC---CCCceeeEEEEccCCCeECccCCc
Confidence 12346799999999888862211 0 12347899996 555 44555322 11 13568
Q ss_pred eecc--CCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEE
Q 002194 462 SWCD--DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYIL 539 (954)
Q Consensus 462 ~~sp--Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~ 539 (954)
+||| ||+.|+ .+..++ ..+||.++.+++ ....++..... +.. .+.|||||++|+|.....
T Consensus 316 ~~sp~~dg~~l~-~~~~~g-~~~l~~~~~~~~--~~~~l~~~~~~-v~~-----~~~~spdg~~l~~~~~~~-------- 377 (706)
T 2z3z_A 316 TFLPGSNNQFIW-QSRRDG-WNHLYLYDTTGR--LIRQVTKGEWE-VTN-----FAGFDPKGTRLYFESTEA-------- 377 (706)
T ss_dssp EECTTCSSEEEE-EECTTS-SCEEEEEETTSC--EEEECCCSSSC-EEE-----EEEECTTSSEEEEEESSS--------
T ss_pred eeecCCCCEEEE-EEccCC-ccEEEEEECCCC--EEEecCCCCeE-EEe-----eeEEcCCCCEEEEEecCC--------
Confidence 9999 998554 444443 478999997653 33444432211 111 157999999999887211
Q ss_pred EecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002194 540 LNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (954)
Q Consensus 540 ~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g 619 (954)
. ....+||.+|+++++.++++...+ +. ..+|||||+++++..++...|.+++++++.++
T Consensus 378 ------~--~~~~~l~~~d~~~~~~~~l~~~~~------~~-------~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 378 ------S--PLERHFYCIDIKGGKTKDLTPESG------MH-------RTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp ------C--TTCBEEEEEETTCCCCEESCCSSS------EE-------EEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred ------C--CceEEEEEEEcCCCCceeccCCCc------eE-------EEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 0 013479999999998888874332 11 25799999999999999999999999999888
Q ss_pred ceeEeecCCCCCCCcCCCceEEEEEEcCCC-eEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCC
Q 002194 620 KSCQITDFPHPYPQLASLQKELIKYQRKDG-VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFP 698 (954)
Q Consensus 620 ~~~~Lt~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~ 698 (954)
+.+.++..+ .+........+.+++++.+| .++++++++|+++++.+ ++|+||++|||+..... . ..|.
T Consensus 437 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~--~~p~iv~~HGg~~~~~~-----~---~~~~ 505 (706)
T 2z3z_A 437 SHTLLEAKN-PDTGYAMPEIRTGTIMAADGQTPLYYKLTMPLHFDPAK--KYPVIVYVYGGPHAQLV-----T---KTWR 505 (706)
T ss_dssp EEEEEECC-------CCCCEEEEEEECTTSSSEEEEEEECCTTCCTTS--CEEEEEECCCCTTCCCC-----C---SCC-
T ss_pred eEeeccccc-hhhhcCCCCcEEEEEEcCCCCEEEEEEEEeCCCCCCCC--CccEEEEecCCCCceee-----c---cccc
Confidence 744555432 34444555678899999999 89999999999876544 48999999998643210 0 1121
Q ss_pred CcccHHHHHHHHCCcEEEEcCCCCCCCCCCccc---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH
Q 002194 699 RIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (954)
Q Consensus 699 ~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 775 (954)
.....++..|+++||.|+++++++..+.|..+. ...+....++|+.+++++|.+++.+|++|++|+||||||++|+.
T Consensus 506 ~~~~~~~~~la~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 585 (706)
T 2z3z_A 506 SSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTN 585 (706)
T ss_dssp ---CCHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHH
T ss_pred cCchHHHHHHHhCCcEEEEEecCCCcccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEEEChHHHHHHH
Confidence 111125778899999999976665544433221 12334567899999999999888889999999999999999999
Q ss_pred HHHhCCCcccEEEEeccCCCCCCCCCCCcc-ccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHH
Q 002194 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQN-EDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (954)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~ 854 (954)
++.++|++|+++|+++|+.++......+.. ....++...+.|...+|...+.++++|+|++||++|.+|| +++++++
T Consensus 586 ~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~--~~~~~~~ 663 (706)
T 2z3z_A 586 LMLTHGDVFKVGVAGGPVIDWNRYAIMYGERYFDAPQENPEGYDAANLLKRAGDLKGRLMLIHGAIDPVVV--WQHSLLF 663 (706)
T ss_dssp HHHHSTTTEEEEEEESCCCCGGGSBHHHHHHHHCCTTTCHHHHHHHCGGGGGGGCCSEEEEEEETTCSSSC--THHHHHH
T ss_pred HHHhCCCcEEEEEEcCCccchHHHHhhhhhhhcCCcccChhhhhhCCHhHhHHhCCCCEEEEeeCCCCCCC--HHHHHHH
Confidence 999999999999999998764322111110 0122345567788889999999999999999999999999 9999999
Q ss_pred HHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 855 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
+++|+..+++++++++|+++|.+... ....+++.+.+||+++|
T Consensus 664 ~~~l~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~~i~~fl~~~l 706 (706)
T 2z3z_A 664 LDACVKARTYPDYYVYPSHEHNVMGP-DRVHLYETITRYFTDHL 706 (706)
T ss_dssp HHHHHHHTCCCEEEEETTCCSSCCTT-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCeEEEEeCCCCCCCCcc-cHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998644 67788999999999875
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-49 Score=476.64 Aligned_cols=580 Identities=16% Similarity=0.155 Sum_probs=415.1
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccc----cccceeEe--cCCeE-EEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNA----IFDNFVWV--NNSTL-LVCT 261 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~----~~~~~~ws--pDG~~-l~~~ 261 (954)
..+..|+||+ +.++|+..+. +.++...||++ ..+++.++++..+...... .-..+.|+ |||+. |+|+
T Consensus 24 ~~~~~~~~s~--~~~~~~~~~~---~~~~~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 24 GRPACVGAVG--DEVWWVAPRP---AEAGRATLVRR-RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp SCCEEEEEET--TEEEEEEEET---TTTTEEEEEEE-CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred CccceeEEcC--CeEEEEecCc---ccCCcEEEEEE-CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 4688899995 4788887532 23557889998 5678888898765320000 00156677 99999 8887
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeC----CceeEcCC-----C-
Q 002194 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD----GTVKEIGP-----P- 331 (954)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~----G~~~~l~~-----~- 331 (954)
.. ...+||.++++ |+.++++. .
T Consensus 98 ~~------------------------------------------------~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~ 129 (662)
T 3azo_A 98 HF------------------------------------------------GDQRLYAFEPDAPGGAVPRPLTPVSAVGGG 129 (662)
T ss_dssp BT------------------------------------------------TTCCEEEECTTSTTCCCCEECSCCCCSTTC
T ss_pred EC------------------------------------------------CCCeEEEEcCCCCCCCCCEeccCCccCCCC
Confidence 11 12459999986 77888876 3
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC------ceEEEec-cCCCcccCCccccccccCccce
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG------IFVRELC-DLPLAEDIPIAFNSVRKGMRSI 404 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g------~~~~~l~-~~~~~~~~p~~~~~~~~g~~~~ 404 (954)
..+..++|||||++|+|.+.+..... + .....+|++|++++ ++.+.++ ... ..+..+
T Consensus 130 ~~~~~~~~spDg~~l~~~~~~~~~~~--~-~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~ 193 (662)
T 3azo_A 130 LRWADPVLLPERGEVWCMAEEFTGEG--P-SDVRRFLAAVPLDGSAAADRSAVRELSDDAH-------------RFVTGP 193 (662)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECSSS--T-TCEEEEEEEEETTSTTTTCGGGSEESSCSCS-------------SEECCC
T ss_pred ccccCcEECCCCCEEEEEEecccCCC--C-CCceeEEEEEECCCCccccCCceeEEEecCC-------------CcccCc
Confidence 56678999999999999986521000 0 00123899999998 7777776 432 123468
Q ss_pred eeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCC-CC---CceEEeec-ccccCceeeccCCceEEEEEecccc
Q 002194 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ-GE---GPEILHKL-DLRYGGISWCDDSLALVYESWYKTR 479 (954)
Q Consensus 405 ~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-g~---~~~~l~~~-~~~~~~~~~spDg~~l~~~~~~~~~ 479 (954)
+|||||+.|+|......+.. -....||++++ + ++ +.+.++.. ...+..+.|||||+ |+|.++.++
T Consensus 194 ~~SpDG~~la~~~~~~~~~~-----~~~~~i~~~d~---~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~- 263 (662)
T 3azo_A 194 RLSPDGRQAVWLAWDHPRMP-----WEGTELKTARV---TEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTG- 263 (662)
T ss_dssp EECTTSSEEEEEEECTTCCT-----TTCEEEEEEEE---CTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTS-
T ss_pred eECCCCCEEEEEECCCCCCC-----CCCcEEEEEEE---CCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCC-
Confidence 89999999988743221100 01347999997 4 34 55666654 56678899999999 778776654
Q ss_pred ceEEEEEcCCCCCCCcEEEecCCCCCccCC---CCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEE
Q 002194 480 RTRTWVISPGSKDVAPRILFDRSSEDVYSD---PGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDL 556 (954)
Q Consensus 480 ~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 556 (954)
..+||+++++++ +.+.++..... .... ++...+.|+|||+.++... . ...+||.
T Consensus 264 ~~~l~~~~~~~~--~~~~l~~~~~~-~~~p~w~~~~~~~~~~~~~~~~~~~~-------------------~-~~~~l~~ 320 (662)
T 3azo_A 264 WWNLHRVDPATG--AATQLCRREEE-FAGPLWTPGMRWFAPLANGLIAVVHG-------------------K-GAAVLGI 320 (662)
T ss_dssp SCEEEEECTTTC--CEEESSCCSSB-SSCCCCSTTCCSEEECTTSCEEEEEB-------------------S-SSCEEEE
T ss_pred CeEEEEEECCCC--ceeeccccccc-ccCccccccCceEeEeCCCEEEEEEE-------------------c-CccEEEE
Confidence 368999998775 44555443221 1110 0001134455554333222 1 2456999
Q ss_pred EECCCCCeEEEeccCcccccceeEEeccCCccccc-cccCCEEEEEEecCCCCceEEEEECCCCceeEeecCCCC-CCCc
Q 002194 557 FDINTGSKERIWESDKEKYYETTVALMSDQTEGDL-YLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHP-YPQL 634 (954)
Q Consensus 557 ~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~~~-~~~~ 634 (954)
+|+++++.++|+...+. +. .+ ++|++.+++...+...|..+|++++.+++.++|+..+.. +...
T Consensus 321 ~d~~~~~~~~l~~~~~~-----~~---------~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~ 386 (662)
T 3azo_A 321 LDPESGELVDAAGPWTE-----WA---------ATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPA 386 (662)
T ss_dssp EETTTTEEEECCSSCCE-----EE---------EEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGG
T ss_pred EECCCCcEEEecCCCCe-----EE---------EEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCcc
Confidence 99999988887655422 11 23 778999999999999999999999999999999876543 2333
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCC--CCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYD--PSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG 712 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~--~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G 712 (954)
.....+.+.+++.+|.++++++++|++++ ....+++|+||++||++..... ..| ...++.|+++|
T Consensus 387 ~~~~~~~~~~~~~dg~~i~~~~~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~~---------~~~----~~~~~~l~~~G 453 (662)
T 3azo_A 387 YYPEPQIRTFTAPDGREIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVP---------AVL----DLDVAYFTSRG 453 (662)
T ss_dssp GSCCCEEEEEECTTSCEEEEEEECCCCSSEECCTTCCCCEEEEECSSSSSCCC---------CSC----CHHHHHHHTTT
T ss_pred ccCcceEEEEEcCCCCEEEEEEECCCCccccCCCCCCccEEEEECCCCCccCc---------ccc----hHHHHHHHhCC
Confidence 33457889999889999999999998754 1112358999999998633211 112 24577889999
Q ss_pred cEEEEcCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEE
Q 002194 713 FAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (954)
|+|+.+++++..|+|.++.. ..+....++|+.+++++|.+++.+|++|++|+||||||+++++++.+ |++|+++|+
T Consensus 454 ~~v~~~d~rG~~~~G~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~-~~~~~~~v~ 532 (662)
T 3azo_A 454 IGVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS-TDVYACGTV 532 (662)
T ss_dssp CEEEEEECTTCSSSCHHHHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHH-CCCCSEEEE
T ss_pred CEEEEECCCCCCCccHHHHHhhccccccccHHHHHHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhC-cCceEEEEe
Confidence 99999999888889887542 23345678999999999999988999999999999999999999887 899999999
Q ss_pred eccCCCCCCC------CCC--Ccc-ccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHh
Q 002194 790 RSGAYNRTLT------PFG--FQN-EDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (954)
Q Consensus 790 ~~~~~~~~~~------~~~--~~~-~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~ 860 (954)
.+|+.++... .+. +.. ......+..+.|...+|+.++.++++|+||+||++|.+|| +.++++++++|+.
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~~~l~~ 610 (662)
T 3azo_A 533 LYPVLDLLGWADGGTHDFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCP--PEQCDRFLEAVAG 610 (662)
T ss_dssp ESCCCCHHHHHTTCSCGGGTTHHHHHTCCTTTCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSC--THHHHHHHHHHTT
T ss_pred cCCccCHHHHhcccccchhhHhHHHHhCCCccchhHHHhhChHhHhccCCCCEEEEeeCCCCCCC--HHHHHHHHHHHHH
Confidence 9998763211 000 000 0111124567788889999999999999999999999999 9999999999999
Q ss_pred CCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcccC
Q 002194 861 HGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 861 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (954)
.|++++++++|+++|.+...++...+++.+++||.++++..
T Consensus 611 ~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~ 651 (662)
T 3azo_A 611 CGVPHAYLSFEGEGHGFRRKETMVRALEAELSLYAQVFGVE 651 (662)
T ss_dssp SCCCEEEEEETTCCSSCCSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCEEEEEECCCCCCCCChHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999998766777889999999999998654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-49 Score=469.74 Aligned_cols=538 Identities=16% Similarity=0.140 Sum_probs=397.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..++|||||++|||.+. .++..+||.+ ++|+.+++|...... +..+.|||| ++++.+ ....+.
T Consensus 23 ~~~~~~~~~DG~~la~~s~------~~g~~~lw~~--~~g~~~~lt~~~~~~----~~~~~~spd-~~l~~~-~~~~g~- 87 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGF------SEGSVNAYLY--DGGETVKLNREPINS----VLDPHYGVG-RVILVR-DVSKGA- 87 (582)
T ss_dssp CEEEEEEEETTTEEEEEEE------ETTEEEEEEE--ETTEEEECCSSCCSE----ECEECTTCS-EEEEEE-ECSTTS-
T ss_pred chheeecCCCCCeEEEEEc------cCCceeEEEE--cCCCcEeeecccccc----cccccCCCC-eEEEEe-ccCCCC-
Confidence 4778899999999999875 3467888886 688999998766322 668999999 655543 110000
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--CCceeEcCCCccccccccCCCCcEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPPAVYTSLDPSPDEKYIL 347 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~--~G~~~~l~~~~~~~~~~~SpDGk~l~ 347 (954)
...+||.+++ +|...+++........+|||||+.++
T Consensus 88 ------------------------------------------~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~ 125 (582)
T 3o4h_A 88 ------------------------------------------EQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVV 125 (582)
T ss_dssp ------------------------------------------CCEEEEEEETTSTTCCEECTTSCSBEEEEEEECSSCEE
T ss_pred ------------------------------------------cceEEEEEeccCCCccccccCCCCceeeeeCCCCCeEE
Confidence 2246899998 77666777664445679999999998
Q ss_pred EEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
|.+.... .+.+||+++++.++++..+. .+++|||||+.|++.....
T Consensus 126 ~~s~~~~------------~~~l~d~~~g~~~~l~~~~~---------------~~~~~spDG~~la~~~~~~------- 171 (582)
T 3o4h_A 126 FTGATED------------RVALYALDGGGLRELARLPG---------------FGFVSDIRGDLIAGLGFFG------- 171 (582)
T ss_dssp EEEECSS------------CEEEEEEETTEEEEEEEESS---------------CEEEEEEETTEEEEEEEEE-------
T ss_pred EEecCCC------------CceEEEccCCcEEEeecCCC---------------ceEEECCCCCEEEEEEEcC-------
Confidence 8875432 56699999988888775331 4788999999998873322
Q ss_pred cccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCcc
Q 002194 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVY 507 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~ 507 (954)
.....||++++ ++++.+.|+.....+..++|||||+.|+ .+..++ ..+||++|++++ +.+ ++......+.
T Consensus 172 --~~~~~i~~~d~---~~g~~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~-~~~i~~~d~~~~--~~~-~~~~~~~~~~ 241 (582)
T 3o4h_A 172 --GGRVSLFTSNL---SSGGLRVFDSGEGSFSSASISPGMKVTA-GLETAR-EARLVTVDPRDG--SVE-DLELPSKDFS 241 (582)
T ss_dssp --TTEEEEEEEET---TTCCCEEECCSSCEEEEEEECTTSCEEE-EEECSS-CEEEEEECTTTC--CEE-ECCCSCSHHH
T ss_pred --CCCeEEEEEcC---CCCCceEeecCCCccccceECCCCCEEE-EccCCC-eeEEEEEcCCCC--cEE-EccCCCcChh
Confidence 12246999996 7778888888877788999999999999 333332 368999999986 334 4333222222
Q ss_pred CCCCCCCee--------eccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCccccccee
Q 002194 508 SDPGSPMMR--------RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (954)
Q Consensus 508 ~~~~~~~~~--------~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 579 (954)
. +. ||||| .+++.... ...+.+|++ |+..+ + ..+ .+
T Consensus 242 ~------~~~~~~~~~~~spdg-~~~~~~~~--------------------~g~~~l~~~--g~~~~-~-~~~-----~v 285 (582)
T 3o4h_A 242 S------YRPTAITWLGYLPDG-RLAVVARR--------------------EGRSAVFID--GERVE-A-PQG-----NH 285 (582)
T ss_dssp H------HCCSEEEEEEECTTS-CEEEEEEE--------------------TTEEEEEET--TEEEC-C-CSS-----EE
T ss_pred h------hhhccccceeEcCCC-cEEEEEEc--------------------CCcEEEEEE--CCeec-c-CCC-----ce
Confidence 2 45 99999 66665522 123667777 54332 1 111 11
Q ss_pred EEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEeecCCCCCCC---cCCCceEEEEEEcCCCeEEEEEE
Q 002194 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQ---LASLQKELIKYQRKDGVQLSATL 656 (954)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~~~~~~---~~~~~~~~~~~~~~~g~~l~~~l 656 (954)
. ..+|| |+ .+++..++...|.++|+++..+ +.++| .+.. ......+.+++++.+|.++++++
T Consensus 286 ~-------~~~~s-dg-~~l~~~s~~~~p~~l~~~d~~~-~~~~l-----~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 350 (582)
T 3o4h_A 286 G-------RVVLW-RG-KLVTSHTSLSTPPRIVSLPSGE-PLLEG-----GLPEDLRRSIAGSRLVWVESFDGSRVPTYV 350 (582)
T ss_dssp E-------EEEEE-TT-EEEEEEEETTEEEEEEEETTCC-EEECC-----CCCHHHHHTEEEEEEEEEECTTSCEEEEEE
T ss_pred E-------EEEec-CC-EEEEEEcCCCCCCeEEEEcCCC-ceEEE-----ecCCccccccCcceEEEEECCCCCEEEEEE
Confidence 1 24678 66 4567788888899999999755 55555 2222 44456789999999999999999
Q ss_pred EcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc---h
Q 002194 657 YLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---D 733 (954)
Q Consensus 657 ~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~ 733 (954)
+.|+++.+ +.|+||++||+++.... ..| ...++.|+++||+|+.+++++..|+|.++.. .
T Consensus 351 ~~p~~~~~----~~p~vv~~HG~~~~~~~---------~~~----~~~~~~l~~~G~~v~~~d~rG~~~~G~s~~~~~~~ 413 (582)
T 3o4h_A 351 LESGRAPT----PGPTVVLVHGGPFAEDS---------DSW----DTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIG 413 (582)
T ss_dssp EEETTSCS----SEEEEEEECSSSSCCCC---------SSC----CHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTT
T ss_pred EcCCCCCC----CCcEEEEECCCcccccc---------ccc----CHHHHHHHhCCCEEEEeccCCCCCCchhHHhhhhh
Confidence 99987533 48999999998643210 112 2467789999999999998888888887542 3
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCcc-----ccc
Q 002194 734 RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN-----EDR 808 (954)
Q Consensus 734 ~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~-----~~~ 808 (954)
.+....++|+.++++++.+++.+| +++|+||||||++|+.++.++|++|+++|+++|+.++......... ...
T Consensus 414 ~~~~~~~~d~~~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (582)
T 3o4h_A 414 DPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQ 491 (582)
T ss_dssp CTTTHHHHHHHHHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEEESCCCCHHHHHHTCCHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEEcCCccCHHHHhhcccchhHHHHHH
Confidence 445677899999999999998787 9999999999999999999999999999999998763210000000 000
Q ss_pred hhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHH
Q 002194 809 TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLW 888 (954)
Q Consensus 809 ~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~ 888 (954)
...+..+.+...+|+.++.++++|+|++||++|.+|| +.++++++++|+..|++++++++|+++|.+...+...++++
T Consensus 492 ~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~v~--~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~ 569 (582)
T 3o4h_A 492 LTGGSREIMRSRSPINHVDRIKEPLALIHPQNASRTP--LKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILL 569 (582)
T ss_dssp HTTTCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSC--HHHHHHHHHHHHHTTCCEEEEEETTCCSSCCBHHHHHHHHH
T ss_pred HcCcCHHHHHhcCHHHHHhcCCCCEEEEecCCCCCcC--HHHHHHHHHHHHhCCCCEEEEEECCCCCCCCChHHHHHHHH
Confidence 1114567788899999999999999999999999999 99999999999999999999999999999876677788999
Q ss_pred HHHHHHHHhccc
Q 002194 889 ETDRWLQKYCVS 900 (954)
Q Consensus 889 ~i~~fl~~~l~~ 900 (954)
.+.+||+++|+.
T Consensus 570 ~i~~fl~~~l~~ 581 (582)
T 3o4h_A 570 PAVFFLATQRER 581 (582)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 999999999853
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-47 Score=465.47 Aligned_cols=584 Identities=12% Similarity=0.096 Sum_probs=405.8
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCc--cccccccceeEecCCeEEEEEecCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI--YLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~--~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
+..| +|||++++|..... +.....||+++..+++.+.+++.... .....+..++|||||++|+|+......
T Consensus 76 ~~~p--~~dG~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~- 148 (710)
T 2xdw_A 76 YSCH--FKKGKRYFYFYNTG----LQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGS- 148 (710)
T ss_dssp ECCC--EEETTEEEEEEECS----SCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTC-
T ss_pred CCCC--EEECCEEEEEEEcC----CceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCC-
Confidence 4445 49999999988532 33455899999888877755432210 001125689999999999998221000
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l 346 (954)
...+|+++|+ +|+...++.. ..+.+++|||||+.|
T Consensus 149 -------------------------------------------~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l 185 (710)
T 2xdw_A 149 -------------------------------------------DWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGM 185 (710)
T ss_dssp -------------------------------------------SCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEE
T ss_pred -------------------------------------------ceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEE
Confidence 1236999999 8877665433 346789999999999
Q ss_pred EEEeecCCcc---cccccCCCCcceEEEeccCceE--EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 347 LISSIHRPYS---FIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 347 ~~~s~~~~~~---~~~~~~~~~~~l~l~d~~g~~~--~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
+|++...+.. ...+......+|++|++.+++. +.+...+.. ......+.|||||+.|++......
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~----------~~~~~~~~~SpDg~~l~~~~~~~~ 255 (710)
T 2xdw_A 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE----------PKWMGGAELSDDGRYVLLSIREGC 255 (710)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC----------TTCEEEEEECTTSCEEEEEEECSS
T ss_pred EEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCC----------CeEEEEEEEcCCCCEEEEEEEccC
Confidence 9998654310 0001112345799999986542 222221110 012346889999999888743210
Q ss_pred CCCccccccCCCeEEEEecCCCCC------C--CceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCC
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQG------E--GPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV 493 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g------~--~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~ 493 (954)
+....||++++ ++ + ..+.++...... ...|+|||+.|++.++.+..+.+|+.++++++..
T Consensus 256 --------~~~~~l~~~d~---~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~ 323 (710)
T 2xdw_A 256 --------DPVNRLWYCDL---QQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE 323 (710)
T ss_dssp --------SSCCEEEEEEG---GGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred --------CCccEEEEEEC---cccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 11458999996 33 3 466776554433 3469999999999988765457899999987521
Q ss_pred -CcEEEecCCCC-CccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCC-eEEEecc
Q 002194 494 -APRILFDRSSE-DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS-KERIWES 570 (954)
Q Consensus 494 -~~~~l~~~~~~-~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~ 570 (954)
..+.++..... .+.+ +.|++++ .+++..... ...+|+++|+.+|+ .+.|...
T Consensus 324 ~~~~~l~~~~~~~~~~~------~~~~~~~-~lv~~~~~~------------------g~~~l~~~~~~~g~~~~~l~~~ 378 (710)
T 2xdw_A 324 SKWKVLVPEHEKDVLEW------VACVRSN-FLVLCYLHD------------------VKNTLQLHDLATGALLKIFPLE 378 (710)
T ss_dssp GGCEEEECCCSSCEEEE------EEEETTT-EEEEEEEET------------------TEEEEEEEETTTCCEEEEECCC
T ss_pred ccceeccCCCCCCeEEE------EEEEcCC-EEEEEEEEC------------------CEEEEEEEECCCCCEEEecCCC
Confidence 12444433221 2222 5677544 444444211 23469999996665 4556543
Q ss_pred CcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCc--eeEeecCCCCCCCcCCCceEEEEEEcCC
Q 002194 571 DKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK--SCQITDFPHPYPQLASLQKELIKYQRKD 648 (954)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~--~~~Lt~~~~~~~~~~~~~~~~~~~~~~~ 648 (954)
.+. +.. .++++|++.+++..++...|..+|++++.+++ .+.+........+...+..+.+++++.|
T Consensus 379 ~~~-----v~~-------~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d 446 (710)
T 2xdw_A 379 VGS-----VVG-------YSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTVKGIDASDYQTVQIFYPSKD 446 (710)
T ss_dssp SSE-----EEE-------EECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECCCTTCCGGGEEEEEEEEECTT
T ss_pred Cce-----EEE-------EecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEeeecccCCcCccccEEEEEEEEcCC
Confidence 221 111 35788999999999999999999999998888 6667654322123345678999999999
Q ss_pred CeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCCCCCCC
Q 002194 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEG 727 (954)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G 727 (954)
|.+|++++++|+++... ++.|+||++|||+...... .|. .....|++ +||+|+.+++++..++|
T Consensus 447 g~~i~~~~~~p~~~~~~--~~~P~vl~~hGg~~~~~~~---------~~~----~~~~~l~~~~G~~v~~~d~rG~g~~g 511 (710)
T 2xdw_A 447 GTKIPMFIVHKKGIKLD--GSHPAFLYGYGGFNISITP---------NYS----VSRLIFVRHMGGVLAVANIRGGGEYG 511 (710)
T ss_dssp SCEEEEEEEEETTCCCS--SCSCEEEECCCCTTCCCCC---------CCC----HHHHHHHHHHCCEEEEECCTTSSTTH
T ss_pred CCEEEEEEEecCCCCCC--CCccEEEEEcCCCCCcCCC---------ccc----HHHHHHHHhCCcEEEEEccCCCCCCC
Confidence 99999999999886443 3589999999986432110 111 23457788 99999998888777776
Q ss_pred Ccccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCC--
Q 002194 728 DEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG-- 802 (954)
Q Consensus 728 ~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~-- 802 (954)
..+.. .......++|+.+++++|++++++|++||+|+|+|+||+++++++.++|++|+|+|+.+|+.++......
T Consensus 512 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~ 591 (710)
T 2xdw_A 512 ETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTI 591 (710)
T ss_dssp HHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTT
T ss_pred hHHHHhhhhhcCCchHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHhhccccCC
Confidence 55332 2334567899999999999999999999999999999999999999999999999999999875432110
Q ss_pred ---Cccccch--hhhcHHHHHhcCcccccC-----CCCC-CEEEEEeCCCCCCCCchHHHHHHHHHHHhC-------CCc
Q 002194 803 ---FQNEDRT--LWEATSTYVEMSPFMSAN-----KLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGH-------GAL 864 (954)
Q Consensus 803 ---~~~~~~~--~~~~~~~~~~~sp~~~~~-----~~~~-P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~-------g~~ 864 (954)
+..+.+. ..+..+.+..++|+.++. +++. |+||+||++|.+|| +.++.+++++|+.. |.+
T Consensus 592 ~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~pP~Li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~ 669 (710)
T 2xdw_A 592 GHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVV--PLHSLKFIATLQYIVGRSRKQNNP 669 (710)
T ss_dssp GGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSC--THHHHHHHHHHHHHTTTSTTCCSC
T ss_pred ChhHHHhCCCCCCHHHHHHHHHhCcHhhhcccccccCCCCcEEEEEeCCCCccC--hhHHHHHHHHHHhhhccccCCCcC
Confidence 0000000 112234566789999998 7886 99999999999999 99999999999987 899
Q ss_pred EEEEEeCCCCCcCCCc-ccHHHHHHHHHHHHHHhccc
Q 002194 865 CRLVILPFESHGYAAR-ESIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 865 ~~~~~~~~~~H~~~~~-~~~~~~~~~i~~fl~~~l~~ 900 (954)
+++++++++||++... ....+.+..+++||.++++.
T Consensus 670 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 706 (710)
T 2xdw_A 670 LLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNI 706 (710)
T ss_dssp EEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999998654 23567888999999999854
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-47 Score=462.78 Aligned_cols=581 Identities=14% Similarity=0.084 Sum_probs=403.8
Q ss_pred eeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCc--cccccccceeEecCCeEEEEEecCCCCCCCC
Q 002194 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI--YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (954)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~--~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (954)
+..+|||++|+|.+... +.....||+++.++++.++|+..... .....+..++|||||++|+|+......
T Consensus 73 ~~p~~dG~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~---- 144 (695)
T 2bkl_A 73 STPSRRNGRFFYVRTHK----DKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAA---- 144 (695)
T ss_dssp CCCEEETTEEEEEEECT----TCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTC----
T ss_pred CCCEEECCEEEEEEEcC----CCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCC----
Confidence 34459999999988532 33468899999988888888764321 001125689999999999998321100
Q ss_pred CCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCC-C-ccccccccCCCCcEEEE
Q 002194 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-P-AVYTSLDPSPDEKYILI 348 (954)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~-~-~~~~~~~~SpDGk~l~~ 348 (954)
...+|+++|+ +|+...... . ....+++|||||+.|+|
T Consensus 145 ----------------------------------------~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~ 184 (695)
T 2bkl_A 145 ----------------------------------------DEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYY 184 (695)
T ss_dssp ----------------------------------------SCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEE
T ss_pred ----------------------------------------ceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEE
Confidence 1246999999 776541111 1 22378999999999999
Q ss_pred EeecCCcccccccCCCCcceEEEeccCceE--EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~--~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
++.+.+............+|++|++.++.. +.+...+.. ......+.|||||+.|++.....
T Consensus 185 ~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~----------~~~~~~~~~SpDG~~l~~~~~~~------ 248 (695)
T 2bkl_A 185 EWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD----------PTTFLQSDLSRDGKYLFVYILRG------ 248 (695)
T ss_dssp EECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC----------TTCEEEEEECTTSCCEEEEEEET------
T ss_pred EEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC----------CEEEEEEEECCCCCEEEEEEeCC------
Confidence 986543100000011234799999986542 333332111 01234688999999998873221
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCC-CcEEEecCC-CC
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV-APRILFDRS-SE 504 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~-~~~~l~~~~-~~ 504 (954)
.....||+++. .+++.+.|+........+.| +||+ |++.++.+....+|+.++++++.. ..+.++... ..
T Consensus 249 ---~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 320 (695)
T 2bkl_A 249 ---WSENDVYWKRP---GEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSA 320 (695)
T ss_dssp ---TTEEEEEEECT---TCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSC
T ss_pred ---CCceEEEEEcC---CCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCC
Confidence 02447888874 55677888766555556666 7888 888877554457899999987521 124444332 11
Q ss_pred CccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEecc
Q 002194 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMS 584 (954)
Q Consensus 505 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 584 (954)
.+.+ ++|+ +..+++.... ....+|++++++++..+.+...... ..
T Consensus 321 ~l~~------~~~~--~~~lv~~~~~------------------dg~~~l~~~~~~g~~~~~l~~~~~~-----~v---- 365 (695)
T 2bkl_A 321 SLLS------VSIV--GGHLSLEYLK------------------DATSEVRVATLKGKPVRTVQLPGVG-----AA---- 365 (695)
T ss_dssp EEEE------EEEE--TTEEEEEEEE------------------TTEEEEEEEETTCCEEEECCCSSSS-----EE----
T ss_pred eEEE------EEEE--CCEEEEEEEE------------------CCEEEEEEEeCCCCeeEEecCCCCe-----EE----
Confidence 1111 4455 3344444421 1234689999876655555433211 01
Q ss_pred CCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEeecCCCCCCCcCCCceEEEEEEcCCCeEEEEEEEcCCCCCC
Q 002194 585 DQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDP 664 (954)
Q Consensus 585 ~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~ 664 (954)
...++++|++.+++..++...|..+|++++.+++.+.|+..+.. .+...+..+.+++++.||.+|+++++.|+++..
T Consensus 366 --~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~dg~~i~~~~~~p~~~~~ 442 (695)
T 2bkl_A 366 --SNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAKVDVP-MNPEQYQVEQVFYASKDGTKVPMFVVHRKDLKR 442 (695)
T ss_dssp --CCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEECCCS-SCGGGEEEEEEEEECTTSCEEEEEEEEETTCCC
T ss_pred --EEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecCCCC-CCHHHCeEEEEEEECCCCCEEEEEEEECCCCCC
Confidence 12467899999999999999999999999999988888765433 233446789999999999999999999988644
Q ss_pred CCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc---hhhHHHHHH
Q 002194 665 SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVA 741 (954)
Q Consensus 665 ~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~ 741 (954)
. ++.|+||++|||+...... .|. .....|+++||+|+.+++++..++|..+.. .......++
T Consensus 443 ~--~~~p~vl~~hGg~~~~~~~---------~~~----~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~ 507 (695)
T 2bkl_A 443 D--GNAPTLLYGYGGFNVNMEA---------NFR----SSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFD 507 (695)
T ss_dssp S--SCCCEEEECCCCTTCCCCC---------CCC----GGGHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHH
T ss_pred C--CCccEEEEECCCCccccCC---------CcC----HHHHHHHhCCCEEEEEecCCCCCcCHHHHHhhHhhcCCCcHH
Confidence 3 3589999999986432211 121 123468899999999888888778766432 234566789
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCC-Cccccchhh------hcH
Q 002194 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG-FQNEDRTLW------EAT 814 (954)
Q Consensus 742 D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~-~~~~~~~~~------~~~ 814 (954)
|+.+++++|++++++|++||+|+|+||||+++++++.++|++|+|+|+.+|+.++...... ........| +..
T Consensus 508 D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~ 587 (695)
T 2bkl_A 508 DFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSGRTWIPEYGTAEKPEDF 587 (695)
T ss_dssp HHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHCCTTSHHHH
T ss_pred HHHHHHHHHHHcCCCCcccEEEEEECHHHHHHHHHHHhCCcceEEEEEcCCccchhhccccCCCcchHHHhCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999885432100 000000011 123
Q ss_pred HHHHhcCcccccCCCC--CCEEEEEeCCCCCCCCchHHHHHHHHHHHh---CCCcEEEEEeCCCCCcCCC-cccHHHHHH
Q 002194 815 STYVEMSPFMSANKLK--KPILLVHGEEDNNSGTLTMQSDRFFNALKG---HGALCRLVILPFESHGYAA-RESIMHVLW 888 (954)
Q Consensus 815 ~~~~~~sp~~~~~~~~--~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~---~g~~~~~~~~~~~~H~~~~-~~~~~~~~~ 888 (954)
+.+..++|+.++.+++ +|+||+||++|.+|| +.++.+++++|+. .|.++++++++++||++.. .....+.+.
T Consensus 588 ~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~ 665 (695)
T 2bkl_A 588 KTLHAYSPYHHVRPDVRYPALLMMAADHDDRVD--PMHARKFVAAVQNSPGNPATALLRIEANAGHGGADQVAKAIESSV 665 (695)
T ss_dssp HHHHHHCGGGCCCSSCCCCEEEEEEETTCSSSC--THHHHHHHHHHHTSTTCCSCEEEEEETTCBTTBCSCHHHHHHHHH
T ss_pred HHHHhcChHhhhhhcCCCCCEEEEeeCCCCCCC--hHHHHHHHHHHHhhccCCCCEEEEEeCCCCcCCCCCHHHHHHHHH
Confidence 4456789999998876 699999999999999 9999999999998 6789999999999999854 344567788
Q ss_pred HHHHHHHHhcccC
Q 002194 889 ETDRWLQKYCVSN 901 (954)
Q Consensus 889 ~i~~fl~~~l~~~ 901 (954)
.+++||.++|+..
T Consensus 666 ~~~~fl~~~l~~~ 678 (695)
T 2bkl_A 666 DLYSFLFQVLDVQ 678 (695)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHcCCC
Confidence 8999999998643
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-46 Score=452.50 Aligned_cols=576 Identities=13% Similarity=0.092 Sum_probs=401.2
Q ss_pred eecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCC---ccccccccceeEecCCeEEEEEecCCCCCCCC
Q 002194 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD---IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (954)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~---~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (954)
..+++|.+++|..... .....-+|+...+++.. .|.+... .. ...+..+.|||||++|+|+......
T Consensus 83 ~p~~~g~~~y~~~~~~----~~~~~~~~r~~~~~~~~-vllD~n~la~~~-~~~l~~~~~SpDg~~lAy~~~~~G~---- 152 (693)
T 3iuj_A 83 APFREGRYHYFFKNDG----LQNQNVLWRQQEGKPAE-VFLDPNTLSPDG-TTALDQLSFSRDGRILAYSLSLAGS---- 152 (693)
T ss_dssp CCEEETTEEEEEEECS----SCSSCEEEEECTTSCCE-EEECGGGGSTTS-CCEEEEEEECTTSSEEEEEEECSSC----
T ss_pred CCEEECCEEEEEEEcC----CCceeEEEEeCCCCCcE-EEEehhhccCCC-cEEEEEEEECCCCCEEEEEEecCCC----
Confidence 3357899999877522 33445677766554443 2322111 11 1125678999999999998321110
Q ss_pred CCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCc-cccccccCCCCcEEEEE
Q 002194 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPA-VYTSLDPSPDEKYILIS 349 (954)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~-~~~~~~~SpDGk~l~~~ 349 (954)
....|+++|+ +|+........ ...+++|| ||+.|+|+
T Consensus 153 ----------------------------------------~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~ 191 (693)
T 3iuj_A 153 ----------------------------------------DWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYS 191 (693)
T ss_dssp ----------------------------------------CEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEE
T ss_pred ----------------------------------------ceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEE
Confidence 1256999999 88765553332 25789999 99999999
Q ss_pred eecCCcccccccCCCCcceEEEeccCce--EEEeccCCC-cccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPL-AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 350 s~~~~~~~~~~~~~~~~~l~l~d~~g~~--~~~l~~~~~-~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
+...+............+|++|++.+.. .+.+...+. .. ....++.|||||+.|++.....
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~----------~~~~~~~~SpDg~~l~~~~~~~------ 255 (693)
T 3iuj_A 192 SYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH----------HRYVGATVTEDDRFLLISAANS------ 255 (693)
T ss_dssp ESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC----------CSEEEEEECTTSCEEEEEEESS------
T ss_pred EecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC----------eEEEEEEEcCCCCEEEEEEccC------
Confidence 8664311111111234579999987543 234443221 00 1224678999999888873321
Q ss_pred ccccCCCeEEEEecCCCCCC--CceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCC-CcEEEecCCC
Q 002194 427 VEVTPRDIIYTQQAEPVQGE--GPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV-APRILFDRSS 503 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~--~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~-~~~~l~~~~~ 503 (954)
.....||++++ +++ +.+.++........+ |+++|+.|+|.++.+..+.+|+.++++++.. ..+.++....
T Consensus 256 ---~~~~~i~~~d~---~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 328 (693)
T 3iuj_A 256 ---TSGNRLYVKDL---SQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ 328 (693)
T ss_dssp ---SSCCEEEEEET---TSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred ---CCCcEEEEEEC---CCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC
Confidence 12358999996 433 567776554433333 8999999999988765568899999988632 1244443322
Q ss_pred CCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEec
Q 002194 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583 (954)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~ 583 (954)
.. +.|+++|++|++..... ...+|+++|++++..+.|...... .+.
T Consensus 329 ~~---------~~~s~~g~~lv~~~~~~------------------g~~~l~~~d~~g~~~~~l~~p~~~----~~~--- 374 (693)
T 3iuj_A 329 QV---------LTVHSGSGYLFAEYMVD------------------ATARVEQFDYEGKRVREVALPGLG----SVS--- 374 (693)
T ss_dssp SC---------EEEEEETTEEEEEEEET------------------TEEEEEEECTTSCEEEEECCSSSS----EEE---
T ss_pred CE---------EEEEEECCEEEEEEEEC------------------CeeEEEEEECCCCeeEEeecCCCc----eEE---
Confidence 21 36899999999887432 234699999998877777544321 111
Q ss_pred cCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEeecCCCCCCCcCCCceEEEEEEcCCCeEEEEEEEcCCCCC
Q 002194 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYD 663 (954)
Q Consensus 584 ~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~ 663 (954)
..++++|++.+++..++...|..+|.+++.+++.+.|+..+..+ +...+..+.+++++.||.+|++++++|+++.
T Consensus 375 ----~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~~~~~~-~~~~~~~~~~~~~~~dg~~i~~~l~~p~~~~ 449 (693)
T 3iuj_A 375 ----GFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRASAAPF-KPEDYVSEQRFYQSKDGTRVPLIISYRKGLK 449 (693)
T ss_dssp ----ECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEECCCSSC-CGGGEEEEEEEEECTTSCEEEEEEEEESSCC
T ss_pred ----eeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEeCCCCc-ChhhCeeEEEEEecCCCcEEEEEEEecCCCC
Confidence 24567899999999999999999999999999888888765432 2345678999999999999999999998764
Q ss_pred CCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc---hhhHHHHH
Q 002194 664 PSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLV 740 (954)
Q Consensus 664 ~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~ 740 (954)
.. ++.|+||++|||+..... ..| ......|+++||+|+.+++++..++|..+.. .......+
T Consensus 450 ~~--~~~P~ll~~hGg~~~~~~---------~~~----~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~ 514 (693)
T 3iuj_A 450 LD--GSNPTILYGYGGFDVSLT---------PSF----SVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVF 514 (693)
T ss_dssp CS--SCCCEEEECCCCTTCCCC---------CCC----CHHHHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHH
T ss_pred CC--CCccEEEEECCCCCcCCC---------Ccc----CHHHHHHHHCCCEEEEEeCCCCCccCHHHHHhhhhhcCCCcH
Confidence 43 358999999998533211 112 1345688999999999999888888766432 23445678
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCcc------ccchhh--h
Q 002194 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN------EDRTLW--E 812 (954)
Q Consensus 741 ~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~------~~~~~~--~ 812 (954)
+|+.+++++|++++++|++||+|+|+|+||+++++++.++|++|+|+|+.+|++|+..... +.. +.+.+. +
T Consensus 515 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~~~~~d~~~~~~-~~~~~~~~~~~g~p~~~~ 593 (693)
T 3iuj_A 515 DDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHT-FTAGTGWAYDYGTSADSE 593 (693)
T ss_dssp HHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCCTTTGGG-SGGGGGCHHHHCCTTSCH
T ss_pred HHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHhhCccceeEEEecCCcchhhhhcc-CCCchhHHHHcCCccCHH
Confidence 9999999999999999999999999999999999999999999999999999988543211 100 001111 1
Q ss_pred c-HHHHHhcCcccccCC-CCCC-EEEEEeCCCCCCCCchHHHHHHHHHHHhC---CCcEEEEEeCCCCCcCCCc-ccHHH
Q 002194 813 A-TSTYVEMSPFMSANK-LKKP-ILLVHGEEDNNSGTLTMQSDRFFNALKGH---GALCRLVILPFESHGYAAR-ESIMH 885 (954)
Q Consensus 813 ~-~~~~~~~sp~~~~~~-~~~P-~Lii~G~~D~~v~~~~~~~~~~~~~l~~~---g~~~~~~~~~~~~H~~~~~-~~~~~ 885 (954)
. .+.+..++|+.++.+ +++| +||+||++|.+|| +.++.+++++|+.. |+++++++++++||++... ....+
T Consensus 594 ~~~~~~~~~sp~~~~~~~~~~Pp~Li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~ 671 (693)
T 3iuj_A 594 AMFDYLKGYSPLHNVRPGVSYPSTMVTTADHDDRVV--PAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIE 671 (693)
T ss_dssp HHHHHHHHHCHHHHCCTTCCCCEEEEEEESSCSSSC--THHHHHHHHHHHHHCCSSSCEEEEEEC-------CHHHHHHH
T ss_pred HHHHHHHhcCHHHhhcccCCCCceeEEecCCCCCCC--hhHHHHHHHHHHhhCCCCCCEEEEEeCCCCCCCcccHHHHHH
Confidence 1 234667899999999 8998 9999999999999 99999999999987 5899999999999998653 45667
Q ss_pred HHHHHHHHHHHhcccC
Q 002194 886 VLWETDRWLQKYCVSN 901 (954)
Q Consensus 886 ~~~~i~~fl~~~l~~~ 901 (954)
.+..+++||.++|+..
T Consensus 672 ~~~~~~~fl~~~l~~~ 687 (693)
T 3iuj_A 672 QSADIYAFTLYEMGYR 687 (693)
T ss_dssp HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHcCCC
Confidence 8889999999998754
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-46 Score=454.61 Aligned_cols=580 Identities=14% Similarity=0.088 Sum_probs=393.0
Q ss_pred eecCCCCeEEEEEeeccccCCCCceEEEEEECC---CCceeecccCCCc--cccccccceeEecCCeEEEEEecCCCCCC
Q 002194 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD---TGKARPLFQSPDI--YLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~---~g~~~~lt~~~~~--~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
..+|||++++|.+... +.....||+++.. +++.+.|++.... .....+..+.|||||++|+|+......
T Consensus 113 ~p~pdG~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~-- 186 (741)
T 1yr2_A 113 LPQRRGASVFYSWNSG----LMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGS-- 186 (741)
T ss_dssp CCEEETTEEEEEEECS----SCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTC--
T ss_pred CCEEECCEEEEEEEcC----CCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCC--
Confidence 4459999999988633 3336899999987 7777776432210 000125689999999999998321000
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~ 347 (954)
...+|+++|+ +|+....... ..+.+++|||| +.|+
T Consensus 187 ------------------------------------------e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~ 223 (741)
T 1yr2_A 187 ------------------------------------------DWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALL 223 (741)
T ss_dssp ------------------------------------------SEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEE
T ss_pred ------------------------------------------ceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEE
Confidence 1246999999 7876554322 33468999999 9999
Q ss_pred EEeecCCcc-cccccCCCCcceEEEeccCceE--EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 348 ISSIHRPYS-FIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 348 ~~s~~~~~~-~~~~~~~~~~~l~l~d~~g~~~--~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
|++...+.. ..........+|++|++.++.. +.+...+.. ......+.|||||+.|++......
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~----------~~~~~~~~~SpDG~~l~~~~~~~~--- 290 (741)
T 1yr2_A 224 YSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL----------PKRGHGASVSSDGRWVVITSSEGT--- 290 (741)
T ss_dssp EEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC----------TTCEEEEEECTTSCEEEEEEECTT---
T ss_pred EEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC----------CeEEEEEEECCCCCEEEEEEEccC---
Confidence 998654310 0001122345799999875542 233222110 012346889999999988743211
Q ss_pred ccccccCCCeEEEEecCCCCCC--C-ceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGE--G-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~--~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 501 (954)
+....||++++ +++ + .+.|.........+ ++|||+.|++.++.+..+.+|+.++++++..+.+.++..
T Consensus 291 -----~~~~~l~~~d~---~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~ 361 (741)
T 1yr2_A 291 -----DPVNTVHVARV---TNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE 361 (741)
T ss_dssp -----CSCCEEEEEEE---ETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC
T ss_pred -----CCcceEEEEEC---CCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC
Confidence 12458999996 554 5 67776554433344 569999999998876556889999988741123444433
Q ss_pred CCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEE
Q 002194 502 SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVA 581 (954)
Q Consensus 502 ~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 581 (954)
....+.+ ++|+ +..+++..... ...+|++++++++..+.|...... .+.
T Consensus 362 ~~~~l~~------~~~~--~~~lv~~~~~d------------------g~~~l~~~~~~g~~~~~l~~~~~~----~v~- 410 (741)
T 1yr2_A 362 SKDNLES------VGIA--GNRLFASYIHD------------------AKSQVLAFDLDGKPAGAVSLPGIG----SAS- 410 (741)
T ss_dssp CSSEEEE------EEEE--BTEEEEEEEET------------------TEEEEEEEETTSCEEEECBCSSSC----EEE-
T ss_pred CCCeEEE------EEEE--CCEEEEEEEEC------------------CEEEEEEEeCCCCceeeccCCCCe----EEE-
Confidence 2221111 3333 45555554221 245699999877666666533211 111
Q ss_pred eccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEeecCCCCCCCcCCCceEEEEEEcCCCeEEEEEEEcCCC
Q 002194 582 LMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPG 661 (954)
Q Consensus 582 ~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~ 661 (954)
..++++|++.+++..++...|..+|++++.+++.+.|+... ...+...+..+.+++++.||.+|+++++.|++
T Consensus 411 ------~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~~~~-~~~~~~~~~~~~~~~~~~dg~~i~~~~~~p~~ 483 (741)
T 1yr2_A 411 ------GLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWEPVH-LTFDPADFRVEQVFYPSKDGTKVPMFIVRRKD 483 (741)
T ss_dssp ------EEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECSCCC-CSSCGGGEEEEEEEEECTTSCEEEEEEEEETT
T ss_pred ------EeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecCC-CCCChhHCEEEEEEEEcCCCCEEEEEEEecCC
Confidence 24678899999999999999999999999988877776522 22233456789999999999999999999987
Q ss_pred CCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc---hhhHHH
Q 002194 662 YDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQ 738 (954)
Q Consensus 662 ~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~ 738 (954)
+ +++.|+||++|||+...... .| ......|+++||+|+.+++++..++|..+.. ..+...
T Consensus 484 ~----~~~~p~vl~~hGg~~~~~~~---------~~----~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~ 546 (741)
T 1yr2_A 484 A----KGPLPTLLYGYGGFNVALTP---------WF----SAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRRDKKQN 546 (741)
T ss_dssp C----CSCCCEEEECCCCTTCCCCC---------CC----CHHHHHHHTTTCEEEEECCTTSSTTHHHHHHTTSGGGTHH
T ss_pred C----CCCCcEEEEECCCCCccCCC---------Cc----CHHHHHHHHCCcEEEEEecCCCCCCCHHHHHhhhhhcCCC
Confidence 5 23589999999986432110 12 1345578899999999888877777655432 223346
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCC-Cc----cccchh--h
Q 002194 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG-FQ----NEDRTL--W 811 (954)
Q Consensus 739 ~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~-~~----~~~~~~--~ 811 (954)
.++|+.+++++|++++++|++||+|+|+|+||+++++++.++|++|+++|+.+|+.++...... .. .+.+.+ .
T Consensus 547 ~~~D~~~~~~~l~~~~~~~~~ri~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~ 626 (741)
T 1yr2_A 547 VFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTAGRYWVDDYGYPEKE 626 (741)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSGGGSTTGGGGHHHHCCTTSH
T ss_pred cHHHHHHHHHHHHHcCCCChHHEEEEEECHHHHHHHHHHHhCchhheEEEecCCccccccccCCCCCchhHHHcCCCCCH
Confidence 6899999999999999999999999999999999999999999999999999999875431100 00 000111 1
Q ss_pred hcHHHHHhcCcccccCC-CCC-CEEEEEeCCCCCCCCchHHHHHHHHHHHh---CCCcEEEEEeCCCCCcCCCc-ccHHH
Q 002194 812 EATSTYVEMSPFMSANK-LKK-PILLVHGEEDNNSGTLTMQSDRFFNALKG---HGALCRLVILPFESHGYAAR-ESIMH 885 (954)
Q Consensus 812 ~~~~~~~~~sp~~~~~~-~~~-P~Lii~G~~D~~v~~~~~~~~~~~~~l~~---~g~~~~~~~~~~~~H~~~~~-~~~~~ 885 (954)
+..+.+..++|+.++.+ +++ |+||+||++|.+|| +.++.+++++|+. .|+++++++++++||++... ....+
T Consensus 627 ~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~--~~~~~~~~~~l~~~~~~g~~~~l~~~~~~gH~~~~~~~~~~~ 704 (741)
T 1yr2_A 627 ADWRVLRRYSPYHNVRSGVDYPAILVTTADTDDRVV--PGHSFKYTAALQTAAIGPKPHLIRIETRAGHGSGKPIDKQIE 704 (741)
T ss_dssp HHHHHHHTTCGGGCCCTTSCCCEEEEEECSCCSSSC--THHHHHHHHHHHHSCCCSSCEEEEEC---------CHHHHHH
T ss_pred HHHHHHHHcCchhhhhccCCCCCEEEEeeCCCCCCC--hhHHHHHHHHHhhhhcCCCCEEEEEeCCCCcCCCCCHHHHHH
Confidence 22345577899999987 885 99999999999999 9999999999999 88999999999999997543 33457
Q ss_pred HHHHHHHHHHHhcccCC
Q 002194 886 VLWETDRWLQKYCVSNT 902 (954)
Q Consensus 886 ~~~~i~~fl~~~l~~~~ 902 (954)
....+++||.++++...
T Consensus 705 ~~~~~~~fl~~~l~~~~ 721 (741)
T 1yr2_A 705 ETADVQAFLAHFTGLTP 721 (741)
T ss_dssp HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 88899999999996543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-43 Score=428.54 Aligned_cols=572 Identities=12% Similarity=0.060 Sum_probs=388.6
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEEC---CCC--ceeecccCCC----ccccccccceeEe-cCCeEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV---DTG--KARPLFQSPD----IYLNAIFDNFVWV-NNSTLLV 259 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~---~~g--~~~~lt~~~~----~~~~~~~~~~~ws-pDG~~l~ 259 (954)
..+.|. ++|++++|.+..+ +.....+|+.+. +++ ..+.+.+... ..+ ..+..+.|| |||++|+
T Consensus 118 ~~~~p~--~~g~~~yy~~~~~----g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~-~~~~~~~~S~PDG~~lA 190 (751)
T 2xe4_A 118 DMSAPY--VYGKYRYYTREVK----GKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAF-CDVMEVKPAPPEHDLVA 190 (751)
T ss_dssp EECCCE--EETTEEEEEEECT----TCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSC-CEEEEEEECTTTTCEEE
T ss_pred cCCCCe--EECCEEEEEEECC----CCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCe-EEEeeeEecCCCCCEEE
Confidence 445554 7899999987532 333457888886 554 4444433210 000 014578999 9999999
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCC--cccc
Q 002194 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP--AVYT 335 (954)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~--~~~~ 335 (954)
|+...... ...+||++|+ +| +. +... ....
T Consensus 191 y~~~~~G~--------------------------------------------~~~~l~v~dl~~g~~~--l~~~~~~~~~ 224 (751)
T 2xe4_A 191 FSVDMSGN--------------------------------------------EVYTIEFKRISDPSQT--IADKVSGTNG 224 (751)
T ss_dssp EEEESSSS--------------------------------------------SCEEEEEEETTCTTCC--CCCCEEEECS
T ss_pred EEEeCCCC--------------------------------------------ceEEEEEEECCCCCEe--CCccccCcee
Confidence 98321100 1246999999 77 52 2222 3356
Q ss_pred ccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE--EEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002194 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (954)
Q Consensus 336 ~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~--~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i 413 (954)
+++|||||+.|+|++.+... ...+|+++++.+++. +.+...+.. .....+.|||||+.|
T Consensus 225 ~~~WspDg~~l~y~~~d~~~--------~~~~v~~~~lgt~~~~~~lv~~~~~~-----------~~~~~~~~SpDg~~l 285 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETL--------RENKVWRHVMGKLQSEDVCLYEEHNP-----------LFSAFMYKAADTNTL 285 (751)
T ss_dssp CCEECSSTTEEEEEEECTTC--------CEEEEEEEETTSCGGGCEEEEECCCT-----------TCEEEEEECTTSSEE
T ss_pred eEEEecCCCEEEEEEECCCC--------CCCEEEEEECCCCchhcEEEEecCCC-----------ceEEEEEECCCCCEE
Confidence 89999999999999854321 123789999886532 233221110 112357899999999
Q ss_pred eEEEEeccCCCccccccCCCeEEEEecCCCCCC--Cc--eEEeecccccCceeeccC---CceEEEEEecc-ccceEEEE
Q 002194 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE--GP--EILHKLDLRYGGISWCDD---SLALVYESWYK-TRRTRTWV 485 (954)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~--~~--~~l~~~~~~~~~~~~spD---g~~l~~~~~~~-~~~~~l~~ 485 (954)
++.... .....||++++ +++ +. +.++... ..+.|++| |+.|+|.++.+ ..+.+||.
T Consensus 286 ~~~~~~----------~~~~~l~~~d~---~~~~~~~~~~~l~~~~---~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~ 349 (751)
T 2xe4_A 286 CIGSQS----------PETAEVHLLDL---RKGNAHNTLEIVRPRE---KGVRYDVQMHGTSHLVILTNEGGAVNHKLLI 349 (751)
T ss_dssp EEEEEC----------SSCEEEEEEES---SSCTTCCCEEESSCCC---TTCCEEEEEETTTEEEEEECTTTCTTCEEEE
T ss_pred EEEecC----------CCCceEEEEEC---CCCCCCceeEEeecCC---CCceEEEeeeeCCEEEEEeCCCCCCCcEEEE
Confidence 887432 12457999996 433 34 5554332 34557776 99999998876 44579999
Q ss_pred EcCCCCCCCc-E-EEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEEC----
Q 002194 486 ISPGSKDVAP-R-ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDI---- 559 (954)
Q Consensus 486 ~d~~~~~~~~-~-~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~---- 559 (954)
++++++ .+. . ++.......+ ..+++++++|++..... ...+|+++|+
T Consensus 350 ~d~~~~-~~~~~~li~~~~~~~l--------~~~~~~~~~lv~~~~~~------------------g~~~l~~~dl~~~~ 402 (751)
T 2xe4_A 350 APRGQP-SDWSHVLVDHSEDVFM--------ESIAVRSNYLVVAGRRA------------------GLTRIWTMMADSQD 402 (751)
T ss_dssp EETTST-TCCCCEEECCCSSEEE--------EEEEECSSEEEEEEEET------------------TEEEEEEEECCTTT
T ss_pred EcCCCc-ccceeeEECCCCCcEE--------EEEEEECCEEEEEEEeC------------------CEEEEEEEeccccc
Confidence 998753 122 2 3332211011 23566677777776321 2456899996
Q ss_pred ---CCCC-eEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEeecCCCC-CCCc
Q 002194 560 ---NTGS-KERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHP-YPQL 634 (954)
Q Consensus 560 ---~~g~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~~~-~~~~ 634 (954)
++++ .+.|.-.... ....+ + ....++++++.+++..++...|..+|.+++.+++.+.|+..+.. ....
T Consensus 403 ~~~~~g~~~~~l~l~~~~----~~~~~-~--~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~~~~~~~~~~~ 475 (751)
T 2xe4_A 403 GVFKAGTGLREVVMEEPI----FTVHL-V--ESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVKVREVGGGFDA 475 (751)
T ss_dssp SCCCTTTCCEECCCCCSS----CEEEE-C--GGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEEECCCCTTCCG
T ss_pred ccccCCccceEECCCCce----eEEEe-c--cCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEeccccccCCCc
Confidence 6676 6776433321 01111 0 00111568889999999999999999999999988888865432 1223
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcE
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (954)
..+..+.+++++.||.+|++++++|+++++. ++.|+||++|||+..... ..|. ...+.|+++||+
T Consensus 476 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~--~~~P~vl~~HGg~~~~~~---------~~~~----~~~~~l~~~G~~ 540 (751)
T 2xe4_A 476 ANYKVERRFATAPDQTKIPLSVVYHKDLDMS--QPQPCMLYGYGSYGLSMD---------PQFS----IQHLPYCDRGMI 540 (751)
T ss_dssp GGEEEEEEEEECTTCCEEEEEEEEETTSCTT--SCCCEEEECCCCTTCCCC---------CCCC----GGGHHHHTTTCE
T ss_pred cceEEEEEEEECCCCcEEEEEEEcCCCCCCC--CCccEEEEECCCCCcCCC---------Ccch----HHHHHHHhCCcE
Confidence 3456899999999999999999999876433 358999999998643221 1121 134578899999
Q ss_pred EEEcCCCCCCCCCCcccc----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEe
Q 002194 715 ILGGPTTPIIGEGDEEAN----DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (954)
Q Consensus 715 V~~~~~~~~~G~G~~~~~----~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (954)
|+.+++++..++|..+.. ..+....++|+.+++++|++++++|++||+|+|+|+||+++++++.++|++|+|+|+.
T Consensus 541 v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~a~~~p~~~~a~v~~ 620 (751)
T 2xe4_A 541 FAIAHIRGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAG 620 (751)
T ss_dssp EEEECCTTSCTTCTHHHHTTSSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEE
T ss_pred EEEEeeCCCCCcCcchhhccccccccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHHHHHHHHhCchheeEEEEe
Confidence 999999888888876432 2334578999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC----CCCCc----cccchh--hhcHHHHHhcCcccccCCCCCC-EEEEEeCCCCCCCCchHHHHHHHHHHH
Q 002194 791 SGAYNRTLT----PFGFQ----NEDRTL--WEATSTYVEMSPFMSANKLKKP-ILLVHGEEDNNSGTLTMQSDRFFNALK 859 (954)
Q Consensus 791 ~~~~~~~~~----~~~~~----~~~~~~--~~~~~~~~~~sp~~~~~~~~~P-~Lii~G~~D~~v~~~~~~~~~~~~~l~ 859 (954)
+|+.++... ...+. ...+.+ .+..+.+..++|+.++.++++| +||+||++|.+|| +.++.+++++|+
T Consensus 621 ~~~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~Pp~Lii~G~~D~~vp--~~~~~~~~~~L~ 698 (751)
T 2xe4_A 621 VPFVDVMTTMCDPSIPLTTGEWEEWGNPNEYKYYDYMLSYSPMDNVRAQEYPNIMVQCGLHDPRVA--YWEPAKWVSKLR 698 (751)
T ss_dssp SCCCCHHHHHTCTTSTTHHHHTTTTCCTTSHHHHHHHHHHCTGGGCCSSCCCEEEEEEETTCSSSC--THHHHHHHHHHH
T ss_pred CCcchHHhhhcccCcccchhhHHHcCCCCCHHHHHHHHhcChhhhhccCCCCceeEEeeCCCCCCC--HHHHHHHHHHHH
Confidence 998774211 00000 011111 1112345678999999999997 9999999999999 999999999999
Q ss_pred hCC---CcEEEEEeCCCCCcCCCcc-cHHHHHHHHHHHHHHhccc
Q 002194 860 GHG---ALCRLVILPFESHGYAARE-SIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 860 ~~g---~~~~~~~~~~~~H~~~~~~-~~~~~~~~i~~fl~~~l~~ 900 (954)
..+ ..+.+.++++++|++.... .....+..+++||.++|+.
T Consensus 699 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~Fl~~~l~~ 743 (751)
T 2xe4_A 699 ECKTDNNEILLNIDMESGHFSAKDRYKFWKESAIQQAFVCKHLKS 743 (751)
T ss_dssp HHCCSCCCEEEEEETTCCSSCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred hcCCCCceEEEEECCCCCCCCcCChhHHHHHHHHHHHHHHHHhCC
Confidence 884 4567777899999986433 3456667899999999864
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-35 Score=345.75 Aligned_cols=321 Identities=12% Similarity=0.062 Sum_probs=248.6
Q ss_pred CCeEEEEECCCCC--eEE-EeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEeecC
Q 002194 551 IPFLDLFDINTGS--KER-IWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDF 627 (954)
Q Consensus 551 ~~~l~~~d~~~g~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~ 627 (954)
...|+++|+++|+ .+. +.-.... .+ .. .+.+++++.+++..++...|+.+|.+++. ++.+.|+..
T Consensus 371 ~~~l~~~~~~~g~~~~~~~i~lp~~~----~~-~~------~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~~l~~~ 438 (711)
T 4hvt_A 371 VAKVVTFTLENEQWTKPVVLKLPYQN----AI-FG------MSSYEEEEEALITIENSIVPPTIYLWVKT-HELKIIRKA 438 (711)
T ss_dssp EEEEEEECEETTEECCCEEECCCSTT----CE-EE------EECCTTCSCEEEEEECSSSCCEEEEECTT-SCEEEEECC
T ss_pred EEEEEEEECCCCceEEEeccCCCCCe----EE-EE------EeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEEEEecC
Confidence 3468899987774 344 3322211 11 11 23467888999999999999999999987 888888877
Q ss_pred CCCCCCcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHH
Q 002194 628 PHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL 707 (954)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (954)
+..+. ...+.++.+++++.||.+|++++++|+++++.+ ++|+||++|||+...... .| .....+.
T Consensus 439 ~~~~~-~~~~~~e~v~~~s~DG~~i~~~l~~P~~~~~~~--~~P~vl~~HGG~~~~~~~---------~~---~~~~~q~ 503 (711)
T 4hvt_A 439 LYSFD-SENYVLEQKEATSFDGVKIPYFLVYKKGIKFDG--KNPTLLEAYGGFQVINAP---------YF---SRIKNEV 503 (711)
T ss_dssp SSCCC-GGGEEEEEEEEECTTSCEEEEEEEEETTCCCSS--CCCEEEECCCCTTCCCCC---------CC---CHHHHHH
T ss_pred CcccC-cccCeeEEEEEECCCCeEEEEEEEecCCCCCCC--CccEEEEECCCCCCCCCC---------cc---cHHHHHH
Confidence 54433 234578999999999999999999999865433 599999999986433211 11 1122357
Q ss_pred HHHCCcEEEEcCCCCCCCCCCccc---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcc
Q 002194 708 WLARGFAILGGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (954)
Q Consensus 708 la~~G~~V~~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~ 784 (954)
|+++||+|+.++++++.++|..+. ...+....++|+.+++++|++++.+|++||+|+|+|+||++++++++++|++|
T Consensus 504 la~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~~D~~aav~~L~~~~~~d~~rI~i~G~S~GG~la~~~a~~~pd~f 583 (711)
T 4hvt_A 504 WVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPELF 583 (711)
T ss_dssp TGGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGC
T ss_pred HHHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcHHHHHHHHHHHHHcCCCCcccEEEEeECHHHHHHHHHHHhCcCce
Confidence 899999999999999888887643 24456678999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccCCCCCCCCCCCc-----cccchhh--hcHHHHHhcCcccccCCCCC--CEEEEEeCCCCCCCCchHHHHHHH
Q 002194 785 CCGIARSGAYNRTLTPFGFQ-----NEDRTLW--EATSTYVEMSPFMSANKLKK--PILLVHGEEDNNSGTLTMQSDRFF 855 (954)
Q Consensus 785 ~a~v~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~sp~~~~~~~~~--P~Lii~G~~D~~v~~~~~~~~~~~ 855 (954)
+|+|+.+|++|+........ .+.+.++ +..+.+..+||+.+++++++ |+||+||++|.+|| +.++.+++
T Consensus 584 ~a~V~~~pv~D~~~~~~~~~~~~~~~~~G~p~~~~~~~~l~~~SP~~~v~~i~~~pPvLii~G~~D~~Vp--~~~s~~~~ 661 (711)
T 4hvt_A 584 GAVACEVPILDMIRYKEFGAGHSWVTEYGDPEIPNDLLHIKKYAPLENLSLTQKYPTVLITDSVLDQRVH--PWHGRIFE 661 (711)
T ss_dssp SEEEEESCCCCTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGSCCTTSCCCEEEEEEETTCCSSC--THHHHHHH
T ss_pred EEEEEeCCccchhhhhccccchHHHHHhCCCcCHHHHHHHHHcCHHHHHhhcCCCCCEEEEecCCCCcCC--hHHHHHHH
Confidence 99999999988643211000 0111111 23455778899999999987 99999999999999 99999999
Q ss_pred HHH-HhCCCcEEEEEeCCCCCcCCCc-ccHHHHHHHHHHHHHHhccc
Q 002194 856 NAL-KGHGALCRLVILPFESHGYAAR-ESIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 856 ~~l-~~~g~~~~~~~~~~~~H~~~~~-~~~~~~~~~i~~fl~~~l~~ 900 (954)
++| +..|++++++++|+++|++... ......+..+++||.++|+.
T Consensus 662 ~aL~~~~g~pv~l~~~p~~gHg~~~~~~~~~~~~~~i~~FL~~~Lg~ 708 (711)
T 4hvt_A 662 YVLAQNPNTKTYFLESKDSGHGSGSDLKESANYFINLYTFFANALKL 708 (711)
T ss_dssp HHHTTCTTCCEEEEEESSCCSSSCSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCEEEEEECCCCCcCcCCcchHHHHHHHHHHHHHHHhCC
Confidence 999 9999999999999999998543 33456677899999999853
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-23 Score=233.74 Aligned_cols=344 Identities=14% Similarity=0.102 Sum_probs=216.6
Q ss_pred CceeeeecCCCC---CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEec
Q 002194 177 GQEIEIQGFPDG---AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN 253 (954)
Q Consensus 177 ~~~~~lt~~~~~---~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp 253 (954)
+..++|+..+.. .....|+|||||++|+|.+. .++..+||++|+++++.++++...... +..+.|||
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~------~~g~~~l~~~d~~~g~~~~lt~~~~~~----~~~~~~sp 90 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGA------FDGPWNYYLLDLNTQVATQLTEGRGDN----TFGGFLSP 90 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEEC------TTSSCEEEEEETTTCEEEECCCSSCBC----SSSCEECT
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEc------CCCCceEEEEeCCCCceEEeeeCCCCC----ccceEEcC
Confidence 456677643311 12334999999999999874 346779999999999999998766532 33678999
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-
Q 002194 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP- 331 (954)
Q Consensus 254 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~- 331 (954)
||+.|+|.. ....||++++ +|+.+.+...
T Consensus 91 dg~~l~~~~-------------------------------------------------~~~~l~~~d~~~g~~~~~~~~~ 121 (388)
T 3pe7_A 91 DDDALFYVK-------------------------------------------------DGRNLMRVDLATLEENVVYQVP 121 (388)
T ss_dssp TSSEEEEEE-------------------------------------------------TTTEEEEEETTTCCEEEEEECC
T ss_pred CCCEEEEEe-------------------------------------------------CCCeEEEEECCCCcceeeeech
Confidence 999999871 1235899999 7776665433
Q ss_pred -ccc--cccccCCCCcEEEEEeecCCcccc---------cccCCCCcceEEEeccCceEEEeccCCCcccCCcccccccc
Q 002194 332 -AVY--TSLDPSPDEKYILISSIHRPYSFI---------VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (954)
Q Consensus 332 -~~~--~~~~~SpDGk~l~~~s~~~~~~~~---------~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~ 399 (954)
... ....++|||+.++........... .........|+++|+++++.+.++... .
T Consensus 122 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-------------~ 188 (388)
T 3pe7_A 122 AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN-------------Q 188 (388)
T ss_dssp TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES-------------S
T ss_pred hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC-------------c
Confidence 222 223459999999875432210000 000112358999999988887776532 1
Q ss_pred Cccceeecc-CCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecc--cccCceeeccCCceEEEEEec
Q 002194 400 GMRSINWRS-DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--LRYGGISWCDDSLALVYESWY 476 (954)
Q Consensus 400 g~~~~~wsp-Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~--~~~~~~~~spDg~~l~~~~~~ 476 (954)
.+..+.||| ||+.|+|..... .+ .....||++++ ++++.+.++... ..+..+.|||||+.|+|.+..
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~--~~-----~~~~~l~~~d~---~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 189 WLGHPIYRPYDDSTVAFCHEGP--HD-----LVDARMWLINE---DGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp CEEEEEEETTEEEEEEEEECSC--TT-----TSSCSEEEEET---TSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred cccccEECCCCCCEEEEEEecC--CC-----CCcceEEEEeC---CCCceEEeeeCCCCcccccceECCCCCEEEEEecC
Confidence 235688999 999999884311 00 12447999986 677777876654 245678999999999998876
Q ss_pred ccc-ceEEEEEcCCCCCCCcEEEecCCCCC-ccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeE
Q 002194 477 KTR-RTRTWVISPGSKDVAPRILFDRSSED-VYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFL 554 (954)
Q Consensus 477 ~~~-~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 554 (954)
.+. ...||++|++++ +.+.++...... ...... ...|||||++|++..... .+. .......|
T Consensus 259 ~~~~~~~l~~~d~~~g--~~~~l~~~~~~~~~~~~~~--~~~~spdg~~l~~~~~~~-----------~~~-~~~~~~~i 322 (388)
T 3pe7_A 259 KGSPDRFIYSADPETL--ENRQLTSMPACSHLMSNYD--GSLMVGDGSDAPVDVQDD-----------SGY-KIENDPFL 322 (388)
T ss_dssp TTCCCEEEEEECTTTC--CEEEEEEECCEEEEEECTT--SSEEEEEECCC------------------------CCCCEE
T ss_pred CCCCcceEEEEecCCC--ceEEEEcCCCceeeeecCC--CCeEccCCCcceeEeeec-----------ccc-ccCCCCEE
Confidence 542 246999999986 444444332200 000000 046999999999875210 000 01124569
Q ss_pred EEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCc
Q 002194 555 DLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (954)
Q Consensus 555 ~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~ 620 (954)
|+||+++++.++|+..... +.............++|||||+++++..... ...+||++++..+.
T Consensus 323 ~~~d~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 323 YVFNMKNGTQHRVARHDTS-WKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-GKPALYLATLPESV 386 (388)
T ss_dssp EEEETTTTEEEEEEECCCC-CCCBTTBSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCGGG
T ss_pred EEEeccCCceEEeccccCc-ccccccccccCCCCccCCCCCCEEEEEecCC-CceeEEEEECChhc
Confidence 9999999999999876631 0000000000122468999999999876654 45679999986553
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=235.24 Aligned_cols=329 Identities=14% Similarity=0.083 Sum_probs=206.8
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
...++|||||++|||.+.. ++ . .+||++++.+ ++.++++... +..
T Consensus 38 ~~~~~~SpDg~~l~~~~~~----------------------~g--~------~~l~~~d~~~----g~~~~lt~~~-~~~ 82 (388)
T 3pe7_A 38 FYQKCFTRDGSKLLFGGAF----------------------DG--P------WNYYLLDLNT----QVATQLTEGR-GDN 82 (388)
T ss_dssp TTSCCBCTTSCEEEEEECT----------------------TS--S------CEEEEEETTT----CEEEECCCSS-CBC
T ss_pred hcCccCCCCCCEEEEEEcC----------------------CC--C------ceEEEEeCCC----CceEEeeeCC-CCC
Confidence 3458999999999999873 11 1 2699999854 6677776422 113
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcccccccccee--EecCCeEEEEEecCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFV--WVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~--wspDG~~l~~~~~~~~~~ 268 (954)
...+.|||||++|+|... ...||++|+++++.+.++..+... ..... ++|||+.++.........
T Consensus 83 ~~~~~~spdg~~l~~~~~---------~~~l~~~d~~~g~~~~~~~~~~~~----~~~~~~~~~~dg~~l~~~~~~~~~~ 149 (388)
T 3pe7_A 83 TFGGFLSPDDDALFYVKD---------GRNLMRVDLATLEENVVYQVPAEW----VGYGTWVANSDCTKLVGIEIRREDW 149 (388)
T ss_dssp SSSCEECTTSSEEEEEET---------TTEEEEEETTTCCEEEEEECCTTE----EEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred ccceEEcCCCCEEEEEeC---------CCeEEEEECCCCcceeeeechhhc----ccccceeECCCCCeeccccccCccc
Confidence 447899999999999763 358999999999998887665532 22233 489999888652110000
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCC-CCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSP-DEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~Sp-DGk~ 345 (954)
.+ . . . ...+... ........|+++|+ +|+.+.++.. ..+..+.||| ||++
T Consensus 150 ~~------~-------~-~----~~~~~~~---------~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~ 202 (388)
T 3pe7_A 150 VP------L-------T-D----WKKFHEF---------YFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDST 202 (388)
T ss_dssp CC------C-------C-S----HHHHHHH---------GGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEE
T ss_pred cc------c-------c-c----cchhhhh---------hccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCE
Confidence 00 0 0 0 0000000 00013367999999 8888888765 6678899999 9999
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
|+|.+.... ......|++++.++++.+.++..... ..+..++|||||+.|+|.......
T Consensus 203 l~~~~~~~~-------~~~~~~l~~~d~~~~~~~~l~~~~~~-----------~~~~~~~~spdg~~l~~~~~~~~~--- 261 (388)
T 3pe7_A 203 VAFCHEGPH-------DLVDARMWLINEDGTNMRKVKTHAEG-----------ESCTHEFWVPDGSALVYVSYLKGS--- 261 (388)
T ss_dssp EEEEECSCT-------TTSSCSEEEEETTSCCCEESCCCCTT-----------EEEEEEEECTTSSCEEEEEEETTC---
T ss_pred EEEEEecCC-------CCCcceEEEEeCCCCceEEeeeCCCC-----------cccccceECCCCCEEEEEecCCCC---
Confidence 999985321 11134899999998887777653211 012457899999999887433211
Q ss_pred cccccCCCeEEEEecCCCCCCCceEEeeccc------ccCceeeccCCceEEEEEecc-----ccceEEEEEcCCCCCCC
Q 002194 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDL------RYGGISWCDDSLALVYESWYK-----TRRTRTWVISPGSKDVA 494 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~------~~~~~~~spDg~~l~~~~~~~-----~~~~~l~~~d~~~~~~~ 494 (954)
....|+++++ ++++.+.++.... ....+.|||||+.|++..... .....||+++++++ +
T Consensus 262 -----~~~~l~~~d~---~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~--~ 331 (388)
T 3pe7_A 262 -----PDRFIYSADP---ETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG--T 331 (388)
T ss_dssp -----CCEEEEEECT---TTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT--E
T ss_pred -----CcceEEEEec---CCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC--c
Confidence 1225999996 6777777755433 234568999999999875431 22367999999985 4
Q ss_pred cEEEecCCCCCc--cC--CCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCC
Q 002194 495 PRILFDRSSEDV--YS--DPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (954)
Q Consensus 495 ~~~l~~~~~~~~--~~--~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 563 (954)
...++....... .. ......++|||||++|+|.... ...++||++++..+.
T Consensus 332 ~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~------------------~g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 332 QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV------------------HGKPALYLATLPESV 386 (388)
T ss_dssp EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT------------------TSSCEEEEEECCGGG
T ss_pred eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecC------------------CCceeEEEEECChhc
Confidence 455654432000 00 0001116899999999998721 135679999987653
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=254.80 Aligned_cols=349 Identities=15% Similarity=0.085 Sum_probs=221.1
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002194 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (954)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~ 192 (954)
.++|||||++|+|...+ ... .|-++..++|+|++.+ ++.++|+..+ ..+.
T Consensus 66 ~~~~Spdg~~l~~~~~~----------------------~~~--~r~~~~~~~~~~d~~~----~~~~~l~~~~--~~~~ 115 (740)
T 4a5s_A 66 DYSISPDGQFILLEYNY----------------------VKQ--WRHSYTASYDIYDLNK----RQLITEERIP--NNTQ 115 (740)
T ss_dssp EEEECTTSSEEEEEEEE----------------------EEC--SSSCEEEEEEEEETTT----TEECCSSCCC--TTEE
T ss_pred ceEECCCCCEEEEEECC----------------------eee--EEEccceEEEEEECCC----CcEEEcccCC--Ccce
Confidence 37899999999998873 111 1112335899999965 6666665432 3688
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc--ccc------------cccceeEecCCeEE
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY--LNA------------IFDNFVWVNNSTLL 258 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~--~~~------------~~~~~~wspDG~~l 258 (954)
.|+|||||++|||++ ..+||++++++|+.+++|..+... +++ ....+.|||||+.|
T Consensus 116 ~~~~SPdG~~la~~~----------~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~l 185 (740)
T 4a5s_A 116 WVTWSPVGHKLAYVW----------NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFL 185 (740)
T ss_dssp EEEECSSTTCEEEEE----------TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEE
T ss_pred eeEECCCCCEEEEEE----------CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEE
Confidence 999999999999986 358999999999999998755421 111 11258899999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeec--cCCc-eeeechhhhhccCccccccccccccceEEEEEe-C---C---ceeEc
Q 002194 259 VCTIPLLRGDPPKKPLVPLGPKMQSN--EKRD-IIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D---G---TVKEI 328 (954)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~---G---~~~~l 328 (954)
+|...+..... .+.-. .... ..+. ...+.++..+.. ....+|+++|+ + | ..+++
T Consensus 186 a~~~~d~~~v~----------~~~~~~~~~~~~~~~~---~~~~~yp~~G~~---~~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 186 AYAQFNDTEVP----------LIEYSFYSDESLQYPK---TVRVPYPKAGAV---NPTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp EEEEEECTTCC----------EEEEEECCSTTCSSCE---EEEEECCBTTSC---CCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred EEEEEcccCCc----------eEEEEeecCCCCCCCc---ceeecCCCCcCc---CCeeEEEEEECCCCCCCCcceEEEe
Confidence 99854333221 00000 0000 0000 000111111110 12347999999 7 7 56677
Q ss_pred CC------C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce----E---EEeccCCCcccCCccc
Q 002194 329 GP------P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----V---RELCDLPLAEDIPIAF 394 (954)
Q Consensus 329 ~~------~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~----~---~~l~~~~~~~~~p~~~ 394 (954)
.. . ..+..++|||||+.+++..++... ...|++||+++++ . +.+.........
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~---------~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v---- 316 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQN---------YSVMDICDYDESSGRWNCLVARQHIEMSTTGWV---- 316 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT---------EEEEEEEEEETTTTEEEECGGGCEEEECSSSCS----
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCC---------EEEEEEEECCCCccccceeEEEEeeeccCCceE----
Confidence 64 2 456789999999988887755322 2279999998765 2 222110000000
Q ss_pred cccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEE
Q 002194 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 395 ~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (954)
+. .....++|||||+.++++.... ++..+||++++ ++++.++|+.+.+.+..+. ++||+.|+|.+
T Consensus 317 ~~--~~~~~p~fspDG~~l~~~~s~~---------~G~~~l~~~~~---~~~~~~~lT~g~~~v~~~~-~~d~~~i~f~~ 381 (740)
T 4a5s_A 317 GR--FRPSEPHFTLDGNSFYKIISNE---------EGYRHICYFQI---DKKDCTFITKGTWEVIGIE-ALTSDYLYYIS 381 (740)
T ss_dssp SS--SSCCCCEECTTSSEEEEEEECT---------TSCEEEEEEET---TCSSCEESCCSSSCEEEEE-EECSSEEEEEE
T ss_pred cc--CcCCCceEcCCCCEEEEEEEcC---------CCceEEEEEEC---CCCceEecccCCEEEEEEE-EEeCCEEEEEE
Confidence 00 0124688999999988663322 33568999996 7888899998888776654 46799999998
Q ss_pred ec--c-ccceEEEEEcCCCCCCCcE-EEecC---CCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCC
Q 002194 475 WY--K-TRRTRTWVISPGSKDVAPR-ILFDR---SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATP 547 (954)
Q Consensus 475 ~~--~-~~~~~l~~~d~~~~~~~~~-~l~~~---~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~ 547 (954)
+. + ..+.+||.++++++ ..+ .++.. .....+. ++|||||+++++.....
T Consensus 382 ~~~~~~~~~~~ly~v~~~g~--~~~~~lt~~~~~~~~~~~~------~~~S~dg~~~~~~~s~~---------------- 437 (740)
T 4a5s_A 382 NEYKGMPGGRNLYKIQLIDY--TKVTCLSCELNPERCQYYS------VSFSKEAKYYQLRCSGP---------------- 437 (740)
T ss_dssp SCGGGCTTCBEEEEEETTEE--EEEEESSTTTSTTTBCBEE------EEECTTSSEEEEEECSB----------------
T ss_pred ecCCCCCceeEEEEEECCCC--CcceeeccccCCCCCceEE------EEECCCCCEEEEEeCCC----------------
Confidence 76 3 24578999999875 222 44422 1111222 78999999998887321
Q ss_pred CCCCCeEEEEECCCCCeEEEeccC
Q 002194 548 EGNIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 548 ~~~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
..+.+++++.++++..+++...
T Consensus 438 --~~p~~~l~~~~~~~~~~~l~~n 459 (740)
T 4a5s_A 438 --GLPLYTLHSSVNDKGLRVLEDN 459 (740)
T ss_dssp --SSCEEEEEETTTTEEEEEEECC
T ss_pred --CCCEEEEEECCCCcEEEEeccC
Confidence 1456899999988877776544
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-22 Score=245.59 Aligned_cols=337 Identities=12% Similarity=0.062 Sum_probs=204.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++|||...+ .... +.++...|++|++.+ ++.++++......
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~----------------------~~~~--~~~~~~~i~~~d~~~----~~~~~l~~~~~~~ 113 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNV----------------------EPIY--QHSYTGYYVLSKIPH----GDPQSLDPPEVSN 113 (723)
T ss_dssp TCSEEEECTTSSEEEEEESC----------------------CCCS--SSCCCSEEEEEESSS----CCCEECCCTTCCS
T ss_pred ccceEEECCCCCEEEEEecC----------------------ccce--eecceeeEEEEECCC----CceEeccCCcccc
Confidence 36789999999999999764 1111 011124799999954 4445565332211
Q ss_pred -cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc--c------------ccccceeEecC
Q 002194 190 -KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL--N------------AIFDNFVWVNN 254 (954)
Q Consensus 190 -~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~--~------------~~~~~~~wspD 254 (954)
.+..++|||||++|||.+ ..+||++++++++.++++..+.... + ..+..+.||||
T Consensus 114 ~~~~~~~~SPdG~~la~~~----------~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpD 183 (723)
T 1xfd_A 114 AKLQYAGWGPKGQQLIFIF----------ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD 183 (723)
T ss_dssp CCCSBCCBCSSTTCEEEEE----------TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT
T ss_pred ccccccEECCCCCEEEEEE----------CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCC
Confidence 478899999999999986 2489999999999988886543211 0 01246999999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-
Q 002194 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP- 331 (954)
Q Consensus 255 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~- 331 (954)
|+.|++.................+. .... ...+.++.++.. .....|+++|+ +++ .+.+..+
T Consensus 184 g~~la~~~~~~~~~~~~~~~~~~~~-----~~~~-------~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~ 248 (723)
T 1xfd_A 184 GTRLAYAAINDSRVPIMELPTYTGS-----IYPT-------VKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPD 248 (723)
T ss_dssp SSEEEEEEEECTTSCEEEECCCSSS-----SSCC-------CEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCC
T ss_pred CCEEEEEEECCCccceEEeeccCCc-----CCCc-------ceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCc
Confidence 9999998543321100000000000 0000 000111111111 12357999999 776 3666542
Q ss_pred ------ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCcccee
Q 002194 332 ------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (954)
Q Consensus 332 ------~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~ 405 (954)
..+..++|||||++|++...+... ...|++||+++++...+.......... .....++
T Consensus 249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~---------~~~i~~~d~~~g~~~~~~~~~~~~~~~-------~~~~~~~ 312 (723)
T 1xfd_A 249 DPRMREYYITMVKWATSTKVAVTWLNRAQN---------VSILTLCDATTGVCTKKHEDESEAWLH-------RQNEEPV 312 (723)
T ss_dssp CGGGSSEEEEEEEESSSSEEEEEEEETTSC---------EEEEEEEETTTCCEEEEEEEECSSCCC-------CCCCCCE
T ss_pred cCCCccceeEEEEEeCCCeEEEEEEcCCCC---------eEEEEEEeCCCCcceEEEEeccCCEEe-------ccCCCce
Confidence 345679999999998877654321 237999999987766554311100000 0013688
Q ss_pred eccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCC---ceEEeecccccCc-eeeccCCceEEEEEeccc-cc
Q 002194 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG---PEILHKLDLRYGG-ISWCDDSLALVYESWYKT-RR 480 (954)
Q Consensus 406 wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~---~~~l~~~~~~~~~-~~~spDg~~l~~~~~~~~-~~ 480 (954)
|||||+.|++.....++.. ....+||+++. .++++ .+.++.+.+.+.. ++|||||+.|+|.+..+. ..
T Consensus 313 ~spdg~~l~~~~~~~~~~~-----~~~~~l~~~d~--~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 385 (723)
T 1xfd_A 313 FSKDGRKFFFIRAIPQGGR-----GKFYHITVSSS--QPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRR 385 (723)
T ss_dssp ECTTSCSEEEEEEECCSSS-----SCEEEEEEECS--SCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTC
T ss_pred EcCCCCeEEEEEecccCCC-----cceeEEEEEec--cCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcc
Confidence 9999999988733322210 11347888882 25666 6777765555544 699999999999887641 34
Q ss_pred eEEEEEcCCCCCCCcEEEecC--CCCCccCCCCCCCeeeccCCcEEEEEEe
Q 002194 481 TRTWVISPGSKDVAPRILFDR--SSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 481 ~~l~~~d~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (954)
.+||.++.+++ .....++.. +...+.. ++|||||+++++...
T Consensus 386 ~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~------~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 386 RQLYSANTVGN-FNRQCLSCDLVENCTYFS------ASFSHSMDFFLLKCE 429 (723)
T ss_dssp CEEEEECSSTT-CCCBCSSTTSSSSCCCCE------EEECTTSSEEEEECC
T ss_pred eEEEEEeCCCC-CCcceecccccCCCCeEE------EEECCCCCEEEEEcc
Confidence 78999998764 123333321 1111222 789999999998874
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-22 Score=251.16 Aligned_cols=392 Identities=13% Similarity=0.032 Sum_probs=238.1
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCC
Q 002194 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (954)
Q Consensus 108 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~ 187 (954)
......++||| ++|||++.+ +||+|++.+ ++.++|+.++
T Consensus 14 ~~~~~~~~~S~--~~iaf~~~~----------------------------------~l~~~~~~g----g~~~~lt~~~- 52 (1045)
T 1k32_A 14 PNLLLNPDIHG--DRIIFVCCD----------------------------------DLWEHDLKS----GSTRKIVSNL- 52 (1045)
T ss_dssp CCCCEEEEEET--TEEEEEETT----------------------------------EEEEEETTT----CCEEEEECSS-
T ss_pred cceEeCcEEeC--CEEEEEECC----------------------------------cEEEEECCC----CcEEEeeeCC-
Confidence 34567899995 699999874 899999854 6778887633
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc--ccccccceeEecCCeEEEEEecCC
Q 002194 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY--LNAIFDNFVWVNNSTLLVCTIPLL 265 (954)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~--~~~~~~~~~wspDG~~l~~~~~~~ 265 (954)
..+..++|||||++|||++... ..++..+||++++++|+.++++...... ....+..++|||||+ |+++....
T Consensus 53 -~~v~~~~~SPDG~~la~~s~~~---~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~~~~ 127 (1045)
T 1k32_A 53 -GVINNARFFPDGRKIAIRVMRG---SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN-LIISTDAM 127 (1045)
T ss_dssp -SEEEEEEECTTSSEEEEEEEES---TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC-EEEEECTT
T ss_pred -CcccCeEECCCCCEEEEEEeec---cCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCE-EEEEECCc
Confidence 4789999999999999987531 1135679999999999999998765430 000016899999999 55553221
Q ss_pred CCCCCCCCCCCCCCcee--eccCCceee--echhhh------hccC---ccccccc---cccccceEEEEEeCCceeEcC
Q 002194 266 RGDPPKKPLVPLGPKMQ--SNEKRDIIQ--VRTFQD------LLKD---EYDEDLF---DYYATTQLVLVSLDGTVKEIG 329 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~--~~~~~~~~~--~r~~~d------~l~~---~~d~~~~---~~~~~~~l~~~~~~G~~~~l~ 329 (954)
.... ....+. ...++.... .....+ .+.. ..+.... .-.....||..+.+|+.+.+.
T Consensus 128 ~~~~-------~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~ 200 (1045)
T 1k32_A 128 QPFS-------SMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV 200 (1045)
T ss_dssp SSST-------TCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE
T ss_pred CCCc-------ccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECc
Confidence 1000 000000 000000000 000000 0000 0000000 001235677655566667775
Q ss_pred CC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCccc---CC----c---------
Q 002194 330 PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAED---IP----I--------- 392 (954)
Q Consensus 330 ~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~---~p----~--------- 392 (954)
.. ..+..+.||+| .++|.+.... ...||.++.+++..+.++.+..... .| +
T Consensus 201 ~~~~~v~~~~~s~d--~l~~~~~~dg----------~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~ 268 (1045)
T 1k32_A 201 DMSTHVSSPVIVGH--RIYFITDIDG----------FGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIY 268 (1045)
T ss_dssp CCSSCCEEEEEETT--EEEEEECTTS----------SCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEE
T ss_pred CCCCcccceEEeCC--EEEEEEeccC----------ceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEE
Confidence 55 77788899988 6777764321 1245555555555454443221000 00 0
Q ss_pred ----------cccc-----------cccCccceeec-cCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceE
Q 002194 393 ----------AFNS-----------VRKGMRSINWR-SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (954)
Q Consensus 393 ----------~~~~-----------~~~g~~~~~ws-pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (954)
.+.. ....+..++|| |||+.+++.. .+.++++++ .+++.+.
T Consensus 269 ~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--------------~~~i~~~~~---~~~~~~~ 331 (1045)
T 1k32_A 269 IFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--------------RGQAFIQDV---SGTYVLK 331 (1045)
T ss_dssp EECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--------------TTEEEEECT---TSSBEEE
T ss_pred EecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE--------------cCEEEEEcC---CCCceEE
Confidence 0000 01135567888 8888777761 447888885 5566666
Q ss_pred Eeeccc-ccCceeeccCCceEEEEEeccccceEEE-EEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 451 LHKLDL-RYGGISWCDDSLALVYESWYKTRRTRTW-VISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 451 l~~~~~-~~~~~~~spDg~~l~~~~~~~~~~~~l~-~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
++.... .+..++|+ ||+.|++.+. ..+|| +++++++ +...++ .....+.. ++|||||++|++..
T Consensus 332 ~~~~~~~~~~~~~~s-dg~~l~~~s~----~~~l~~~~d~~~~--~~~~l~-~~~~~~~~------~~~SpDG~~la~~~ 397 (1045)
T 1k32_A 332 VPEPLRIRYVRRGGD-TKVAFIHGTR----EGDFLGIYDYRTG--KAEKFE-ENLGNVFA------MGVDRNGKFAVVAN 397 (1045)
T ss_dssp CSCCSCEEEEEECSS-SEEEEEEEET----TEEEEEEEETTTC--CEEECC-CCCCSEEE------EEECTTSSEEEEEE
T ss_pred ccCCCcceEEeeeEc-CCCeEEEEEC----CCceEEEEECCCC--CceEec-CCccceee------eEECCCCCEEEEEC
Confidence 665555 67789999 9999999875 25799 8998875 344444 22222222 78999999999876
Q ss_pred eeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecC---
Q 002194 529 KKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESK--- 605 (954)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~--- 605 (954)
. ...|++||+++++.+.+...... ....++|||||+++++.....
T Consensus 398 ~---------------------~~~v~~~d~~tg~~~~~~~~~~~-----------~v~~~~~SpDG~~la~~~~~~~~~ 445 (1045)
T 1k32_A 398 D---------------------RFEIMTVDLETGKPTVIERSREA-----------MITDFTISDNSRFIAYGFPLKHGE 445 (1045)
T ss_dssp T---------------------TSEEEEEETTTCCEEEEEECSSS-----------CCCCEEECTTSCEEEEEEEECSST
T ss_pred C---------------------CCeEEEEECCCCceEEeccCCCC-----------CccceEECCCCCeEEEEecCcccc
Confidence 2 23599999999998888743321 011357999999998877654
Q ss_pred ---CCCceEEEEECCCCceeEeecC
Q 002194 606 ---TENTQYYIQSWPDKKSCQITDF 627 (954)
Q Consensus 606 ---~~p~~l~~~~~~~g~~~~Lt~~ 627 (954)
..+..++++++.+++.+.++..
T Consensus 446 ~~~~~~~~i~l~d~~~g~~~~l~~~ 470 (1045)
T 1k32_A 446 TDGYVMQAIHVYDMEGRKIFAATTE 470 (1045)
T ss_dssp TCSCCEEEEEEEETTTTEEEECSCS
T ss_pred ccCCCCCeEEEEECCCCcEEEeeCC
Confidence 4457899999988877666643
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-22 Score=207.70 Aligned_cols=221 Identities=19% Similarity=0.205 Sum_probs=165.9
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
+..+.++++. +|..+.++++.|++. +++.|+||++||... ........+..|+++||.|+
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~p~~~----~~~~p~vv~~HG~~g---------------~~~~~~~~~~~l~~~G~~v~ 63 (241)
T 3f67_A 4 IIAGETSIPS-QGENMPAYHARPKNA----DGPLPIVIVVQEIFG---------------VHEHIRDLCRRLAQEGYLAI 63 (241)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEEETTC----CSCEEEEEEECCTTC---------------SCHHHHHHHHHHHHTTCEEE
T ss_pred ceeeeEEEec-CCcceEEEEecCCCC----CCCCCEEEEEcCcCc---------------cCHHHHHHHHHHHHCCcEEE
Confidence 5577888887 899999999999752 235899999999421 11112345677889999999
Q ss_pred EcCCCCCCCCCCccc----------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccE
Q 002194 717 GGPTTPIIGEGDEEA----------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~----------~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a 786 (954)
++++++..|...... .........+|+.+++++|.+++ +|+++|+++|||+||.+++.++.++|+ +++
T Consensus 64 ~~d~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~ 141 (241)
T 3f67_A 64 APELYFRQGDPNEYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKA 141 (241)
T ss_dssp EECTTTTTCCGGGCCSHHHHHHHTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCE
T ss_pred EecccccCCCCCchhhHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cce
Confidence 966643322111111 01123467899999999999987 888999999999999999999999977 778
Q ss_pred EEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEE
Q 002194 787 GIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR 866 (954)
Q Consensus 787 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~ 866 (954)
+|+..+....... .+...+|...+.++++|+|++||++|..+| ++++.++++.++..+.+++
T Consensus 142 ~v~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~P~l~~~g~~D~~~~--~~~~~~~~~~l~~~~~~~~ 203 (241)
T 3f67_A 142 AVAWYGKLVGEKS----------------LNSPKHPVDIAVDLNAPVLGLYGAKDASIP--QDTVETMRQALRAANATAE 203 (241)
T ss_dssp EEEESCCCSCCCC----------------SSSCCCHHHHGGGCCSCEEEEEETTCTTSC--HHHHHHHHHHHHHTTCSEE
T ss_pred EEEEeccccCCCc----------------cCCccCHHHhhhhcCCCEEEEEecCCCCCC--HHHHHHHHHHHHHcCCCcE
Confidence 8877765321110 012245566677889999999999999998 9999999999999999999
Q ss_pred EEEeCCCCCcCCC-------cccHHHHHHHHHHHHHHh
Q 002194 867 LVILPFESHGYAA-------RESIMHVLWETDRWLQKY 897 (954)
Q Consensus 867 ~~~~~~~~H~~~~-------~~~~~~~~~~i~~fl~~~ 897 (954)
++++|+++|.+.. .+.....++.+++||++|
T Consensus 204 ~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 241 (241)
T 3f67_A 204 IVVYPEADHAFNADYRASYHEESAKDGWQRMLAWFAQY 241 (241)
T ss_dssp EEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCcceecCCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 9999999999852 233467788899998754
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-22 Score=212.94 Aligned_cols=237 Identities=14% Similarity=0.124 Sum_probs=170.8
Q ss_pred EEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCC
Q 002194 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (954)
Q Consensus 642 ~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~ 721 (954)
.++.+.+|..+.+++..|....+ .++.|+||++|||++..+. .......+..|+++||.|+.+++
T Consensus 17 ~~~~~~~g~~l~~~~~~~~~~~~--~~~~p~vv~~HGgg~~~~~------------~~~~~~~~~~l~~~G~~v~~~d~- 81 (276)
T 3hxk_A 17 STFSLNDTAWVDFYQLQNPRQNE--NYTFPAIIICPGGGYQHIS------------QRESDPLALAFLAQGYQVLLLNY- 81 (276)
T ss_dssp EECCCBTTBEEEEECCCC--------CCBCEEEEECCSTTTSCC------------GGGSHHHHHHHHHTTCEEEEEEC-
T ss_pred ccccCCCCeEEEEEEeCCccccc--CCCCCEEEEEcCCccccCC------------chhhHHHHHHHHHCCCEEEEecC-
Confidence 34566788888876655542111 1458999999997533221 11123456788899999999555
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHh-CCCcccEEEEeccCCCCC
Q 002194 722 PIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAH-APHLFCCGIARSGAYNRT 797 (954)
Q Consensus 722 ~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~~~~~~~ 797 (954)
+|+|.+... ......+.|+.++++++.++. .+|+++|+|+|||+||.+++.++.+ .+.+++++|+.+|+.+..
T Consensus 82 --~g~g~s~~~-~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~ 158 (276)
T 3hxk_A 82 --TVMNKGTNY-NFLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFT 158 (276)
T ss_dssp --CCTTSCCCS-CTHHHHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTT
T ss_pred --ccCCCcCCC-CcCchHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHH
Confidence 455553322 234577899999999998874 3788999999999999999999998 678999999999987633
Q ss_pred CCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 002194 798 LTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (954)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (954)
.. +.......... ..+. ...++...+.++.+|+|++||++|..|| +.++.+++++++..+.+++++++++++|.+
T Consensus 159 ~~-~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 233 (276)
T 3hxk_A 159 FG-WPSDLSHFNFE-IENI-SEYNISEKVTSSTPPTFIWHTADDEGVP--IYNSLKYCDRLSKHQVPFEAHFFESGPHGV 233 (276)
T ss_dssp SS-CSSSSSSSCCC-CSCC-GGGBTTTTCCTTSCCEEEEEETTCSSSC--THHHHHHHHHHHTTTCCEEEEEESCCCTTC
T ss_pred hh-CCcchhhhhcC-chhh-hhCChhhccccCCCCEEEEecCCCceeC--hHHHHHHHHHHHHcCCCeEEEEECCCCCCc
Confidence 22 11110000000 1111 4567777888899999999999999999 999999999999999999999999999987
Q ss_pred CCcc------------cHHHHHHHHHHHHHHhcccC
Q 002194 878 AARE------------SIMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 878 ~~~~------------~~~~~~~~i~~fl~~~l~~~ 901 (954)
.... ....+++.+.+||+++.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~ 269 (276)
T 3hxk_A 234 SLANRTTAPSDAYCLPSVHRWVSWASDWLERQIKNL 269 (276)
T ss_dssp TTCSTTSCSSSTTCCHHHHTHHHHHHHHHHHHHHTT
T ss_pred cccCccccccccccCchHHHHHHHHHHHHHhCcccc
Confidence 5322 34678888999999987544
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-22 Score=221.29 Aligned_cols=231 Identities=19% Similarity=0.150 Sum_probs=173.8
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
...+.++++. +|.+|++++++|++. ++.|+||++||+.... .. .......|+++||.|+
T Consensus 125 ~~~~~v~~~~-dg~~i~~~l~~p~~~-----~~~P~vl~~hG~~~~~-----------~~----~~~~~~~l~~~G~~v~ 183 (386)
T 2jbw_A 125 PPAERHELVV-DGIPMPVYVRIPEGP-----GPHPAVIMLGGLESTK-----------EE----SFQMENLVLDRGMATA 183 (386)
T ss_dssp SCEEEEEEEE-TTEEEEEEEECCSSS-----CCEEEEEEECCSSCCT-----------TT----THHHHHHHHHTTCEEE
T ss_pred CCeEEEEEEe-CCEEEEEEEEcCCCC-----CCCCEEEEeCCCCccH-----------HH----HHHHHHHHHhCCCEEE
Confidence 5688899987 899999999999862 3589999999863110 01 1234677889999999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC
Q 002194 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (954)
.++ .+|+|.+............++.+++++|.+++.+|+++|+|+|+|+||++++.++.+ |++|+++|++ |+++.
T Consensus 184 ~~d---~rG~G~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~la~~~a~~-~~~~~a~v~~-~~~~~ 258 (386)
T 2jbw_A 184 TFD---GPGQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAAC-EPRLAACISW-GGFSD 258 (386)
T ss_dssp EEC---CTTSGGGTTTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHH-CTTCCEEEEE-SCCSC
T ss_pred EEC---CCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCCcCcccEEEEEEChHHHHHHHHHcC-CcceeEEEEe-ccCCh
Confidence 944 456666522211122334568889999999988899999999999999999999999 7899999999 88775
Q ss_pred CCCCCCCcc----------ccchhhhcH-HHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHH-HhCCCc
Q 002194 797 TLTPFGFQN----------EDRTLWEAT-STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNAL-KGHGAL 864 (954)
Q Consensus 797 ~~~~~~~~~----------~~~~~~~~~-~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l-~~~g~~ 864 (954)
......+.. .....++.. ..+..+++...+.++++|+|++||++|. |+ +.+++++++++ +. +
T Consensus 259 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-v~--~~~~~~l~~~l~~~---~ 332 (386)
T 2jbw_A 259 LDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VP--LSFVDTVLELVPAE---H 332 (386)
T ss_dssp STTGGGSCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SC--THHHHHHHHHSCGG---G
T ss_pred HHHHHhccHHHHHHHHHHhCCCCHHHHHHHHHHhCChhhhhcccCCCEEEEECCCCC-CC--HHHHHHHHHHhcCC---C
Confidence 322111100 000112222 4556778888889999999999999999 98 89999999988 54 5
Q ss_pred EEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcccC
Q 002194 865 CRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 865 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (954)
++++++++++|.+ ..+...+.+.+.+||+++++..
T Consensus 333 ~~~~~~~~~gH~~--~~~~~~~~~~i~~fl~~~l~~~ 367 (386)
T 2jbw_A 333 LNLVVEKDGDHCC--HNLGIRPRLEMADWLYDVLVAG 367 (386)
T ss_dssp EEEEEETTCCGGG--GGGTTHHHHHHHHHHHHHHTSS
T ss_pred cEEEEeCCCCcCC--ccchHHHHHHHHHHHHHhcCCc
Confidence 8999999999976 4556788899999999999754
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-21 Score=235.05 Aligned_cols=331 Identities=13% Similarity=0.152 Sum_probs=212.3
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc------------------cc--ccccce
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY------------------LN--AIFDNF 249 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~------------------~~--~~~~~~ 249 (954)
.+..++|||||++|+|.+..+ .++....||++|+++|+.++++...... +. ..+..+
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d---~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKD---SDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCS---SCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCceEecCCCEEEEEeccC---CCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 578899999999999987411 1223569999999999988877543210 00 125689
Q ss_pred eEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC---ce
Q 002194 250 VWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG---TV 325 (954)
Q Consensus 250 ~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G---~~ 325 (954)
+|||||+.|+++ ...+|+++++ +| ..
T Consensus 115 ~~SpDg~~l~~~--------------------------------------------------~~~~i~~~d~~~~~~~~~ 144 (741)
T 2ecf_A 115 QWSPDAQRLLFP--------------------------------------------------LGGELYLYDLKQEGKAAV 144 (741)
T ss_dssp EECTTSSEEEEE--------------------------------------------------ETTEEEEEESSSCSTTSC
T ss_pred EECCCCCEEEEE--------------------------------------------------eCCcEEEEECCCCCcceE
Confidence 999999999987 1246999999 77 77
Q ss_pred eEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcc---cCCcccc-ccccC
Q 002194 326 KEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE---DIPIAFN-SVRKG 400 (954)
Q Consensus 326 ~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~---~~p~~~~-~~~~g 400 (954)
++++.. ..+..++|||||++|+|.+. .+|++||+++++.++++...... ..+.+.. .....
T Consensus 145 ~~l~~~~~~~~~~~~SPDG~~la~~~~--------------~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~ 210 (741)
T 2ecf_A 145 RQLTHGEGFATDAKLSPKGGFVSFIRG--------------RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDR 210 (741)
T ss_dssp CBCCCSSSCEEEEEECTTSSEEEEEET--------------TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCC
T ss_pred EEcccCCcccccccCCCCCCEEEEEeC--------------CcEEEEecCCCCEEEeccCCccceeccccceeeeecccc
Confidence 777766 67788999999999999983 28999999988887776533210 0000000 00112
Q ss_pred ccceeeccCCCCceEEEEeccCCCc----------------cc----cccCCCeEEEEecCCCCC-CCceEEee---ccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDA----------------KV----EVTPRDIIYTQQAEPVQG-EGPEILHK---LDL 456 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~----------------~~----~~~~~~~l~~~~~~~~~g-~~~~~l~~---~~~ 456 (954)
...++|||||+.|+|.......... .+ .......|+++++ ++ ++.+.+.. ...
T Consensus 211 ~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~---~~~~~~~~~~~~~~~~~ 287 (741)
T 2ecf_A 211 HTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP---AEQAQTQWIDLGKEQDI 287 (741)
T ss_dssp CCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS---STTCCCEEECCCSCSSE
T ss_pred ccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC---CCCCceEEecCCCCcce
Confidence 4679999999999987321100000 00 0011237889986 56 66666642 344
Q ss_pred ccCceeeccCCceEEEEEe-ccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCC
Q 002194 457 RYGGISWCDDSLALVYESW-YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEG 535 (954)
Q Consensus 457 ~~~~~~~spDg~~l~~~~~-~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~ 535 (954)
.+..++| |||+.|++... .......|+++|+.++ +.+.+.......... ....++|||||+ +++....
T Consensus 288 ~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~--~~~~~~~spdg~-~~~~~~~----- 356 (741)
T 2ecf_A 288 YLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN--QQRVLAHETSPTWVP--LHNSLRFLDDGS-ILWSSER----- 356 (741)
T ss_dssp EEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC--CEEEEEEEECSSCCC--CCSCCEECTTSC-EEEEECT-----
T ss_pred EEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC--ceEEEEEcCCCCcCC--cCCceEECCCCe-EEEEecC-----
Confidence 5678999 99999999875 3334578999999986 344443322211000 001178999999 4454411
Q ss_pred cEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCC-CceEEEE
Q 002194 536 TYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTE-NTQYYIQ 614 (954)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~-p~~l~~~ 614 (954)
....+||.+|++++ .+.++..... +..+ ..|||||+.+++....... ...||.+
T Consensus 357 -------------~g~~~l~~~~~~~~-~~~l~~~~~~-----v~~~------~~~s~dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 357 -------------TGFQHLYRIDSKGK-AAALTHGNWS-----VDEL------LAVDEKAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp -------------TSSCEEEEECSSSC-EEESCCSSSC-----EEEE------EEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred -------------CCccEEEEEcCCCC-eeeeeecceE-----EEeE------eEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence 12356999998777 7777765432 1211 2489999998877664321 3457777
Q ss_pred ECCCCceeEeec
Q 002194 615 SWPDKKSCQITD 626 (954)
Q Consensus 615 ~~~~g~~~~Lt~ 626 (954)
+..++..++|+.
T Consensus 412 ~~~g~~~~~l~~ 423 (741)
T 2ecf_A 412 PLQGGQPQRLSK 423 (741)
T ss_dssp ETTCCCCEECCC
T ss_pred EcCCCCeeeccc
Confidence 765665677764
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-22 Score=208.32 Aligned_cols=230 Identities=13% Similarity=0.084 Sum_probs=148.8
Q ss_pred CCCceeEeecCCCCCCCcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCC
Q 002194 617 PDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNE 696 (954)
Q Consensus 617 ~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~ 696 (954)
..|+.+..+..+......-..+.+.+++ ..||.+|+++||+|++ ..+.|+||++||++.. .
T Consensus 9 ~~~~~r~~~~~~~~~~~~~~~~e~~~~~-~~dG~~i~g~l~~P~~-----~~~~p~Vl~~HG~g~~-------------~ 69 (259)
T 4ao6_A 9 HHGSMRHQMSWNGKDERKLSVQERGFSL-EVDGRTVPGVYWSPAE-----GSSDRLVLLGHGGTTH-------------K 69 (259)
T ss_dssp --------CEECSCCEEETTEEEEEEEE-EETTEEEEEEEEEESS-----SCCSEEEEEEC-------------------
T ss_pred ccCcceeeeccCCCccccCCceEEEEEE-eeCCeEEEEEEEeCCC-----CCCCCEEEEeCCCccc-------------c
Confidence 3455555554443222111222334444 4799999999999975 3358999999997421 1
Q ss_pred CCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc---------------------hhhHHHHHHHHHHHHHHHHHcCC
Q 002194 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---------------------DRFVEQLVACAEAAVEEVVRRGV 755 (954)
Q Consensus 697 ~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---------------------~~~~~~~~~D~~~av~~l~~~~~ 755 (954)
........++.|+++||+|+.++++ |+|.+... .......+.|..++++++...
T Consensus 70 ~~~~~~~~a~~la~~Gy~Vl~~D~r---G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~-- 144 (259)
T 4ao6_A 70 KVEYIEQVAKLLVGRGISAMAIDGP---GHGERASVQAGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAE-- 144 (259)
T ss_dssp --CHHHHHHHHHHHTTEEEEEECCC---C-------------CCGGGSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--
T ss_pred cchHHHHHHHHHHHCCCeEEeeccC---CCCCCCCcccccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--
Confidence 1111234678899999999995554 54443110 111234467888889988665
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEE
Q 002194 756 AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILL 835 (954)
Q Consensus 756 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Li 835 (954)
+|+++|+++|+|+||++++.+++..|+ ++|+|+..+..... ...++...+.++++|+||
T Consensus 145 ~d~~rv~~~G~S~GG~~a~~~a~~~pr-i~Aav~~~~~~~~~--------------------~~~~~~~~a~~i~~P~Li 203 (259)
T 4ao6_A 145 EGPRPTGWWGLSMGTMMGLPVTASDKR-IKVALLGLMGVEGV--------------------NGEDLVRLAPQVTCPVRY 203 (259)
T ss_dssp HCCCCEEEEECTHHHHHHHHHHHHCTT-EEEEEEESCCTTST--------------------THHHHHHHGGGCCSCEEE
T ss_pred cCCceEEEEeechhHHHHHHHHhcCCc-eEEEEEeccccccc--------------------cccchhhhhccCCCCEEE
Confidence 688999999999999999999999964 77766654432100 012344567789999999
Q ss_pred EEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 836 i~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
+||++|.+|| ++++.++++++.. .+++++++|+ +|... ...+..+.+++||++||+
T Consensus 204 ~hG~~D~~vp--~~~~~~l~~al~~--~~k~l~~~~G-~H~~~---p~~e~~~~~~~fl~~hLk 259 (259)
T 4ao6_A 204 LLQWDDELVS--LQSGLELFGKLGT--KQKTLHVNPG-KHSAV---PTWEMFAGTVDYLDQRLK 259 (259)
T ss_dssp EEETTCSSSC--HHHHHHHHHHCCC--SSEEEEEESS-CTTCC---CHHHHTHHHHHHHHHHCC
T ss_pred EecCCCCCCC--HHHHHHHHHHhCC--CCeEEEEeCC-CCCCc---CHHHHHHHHHHHHHHhcC
Confidence 9999999999 9999999999853 4578899998 55432 234667889999999985
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=239.63 Aligned_cols=349 Identities=14% Similarity=0.049 Sum_probs=212.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCce---eeeecCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE---IEIQGFP 186 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~---~~lt~~~ 186 (954)
.+..++|||||++|||.+.. + .. .+-+....|++|++.+ ++. ++++
T Consensus 61 ~~~~~~~SpDg~~la~~~~~--------------------~--~~--~~~s~~~~i~~~d~~~----g~~~~~~~l~--- 109 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDY--------------------S--KL--WRYSYTATYYIYDLSN----GEFVRGNELP--- 109 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEE--------------------E--EC--SSSCEEEEEEEEETTT----TEECCSSCCC---
T ss_pred ceeeEEECCCCCeEEEEecC--------------------c--ee--EEeecceEEEEEECCC----CccccceecC---
Confidence 36789999999999998762 0 00 0112235899999854 444 3332
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc-c-c------------ccccceeEe
Q 002194 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY-L-N------------AIFDNFVWV 252 (954)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~-~-~------------~~~~~~~ws 252 (954)
..+..++|||||++|||+. ..+||++++++|+.++++..+... + + .....+.||
T Consensus 110 --~~~~~~~~SPDG~~la~~~----------~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS 177 (719)
T 1z68_A 110 --RPIQYLCWSPVGSKLAYVY----------QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS 177 (719)
T ss_dssp --SSBCCEEECSSTTCEEEEE----------TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred --cccccceECCCCCEEEEEE----------CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence 2478899999999999975 348999999999988887544321 0 0 011479999
Q ss_pred cCCeEEEEEecCCCCCCCC-C--CCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce---
Q 002194 253 NNSTLLVCTIPLLRGDPPK-K--PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV--- 325 (954)
Q Consensus 253 pDG~~l~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~--- 325 (954)
|||+.|++...+......- . ...+.-+. .. .+.++..+.. .....|+++|+ +|+.
T Consensus 178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~--------~~-------~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~ 239 (719)
T 1z68_A 178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPR--------TI-------NIPYPKAGAK---NPVVRIFIIDTTYPAYVGP 239 (719)
T ss_dssp TTSSEEEEEEEECTTSCEEEEEECCSSSSCE--------EE-------EEECCBTTSC---CCEEEEEEEESSCHHHHCC
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCcc--------ce-------eecCCCCCCC---CCeeEEEEEECCCCCccce
Confidence 9999999985432221000 0 00000000 00 0011111100 13457999999 6654
Q ss_pred eEcCC------C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEe----ccCceEEEecc---CCCcccCC
Q 002194 326 KEIGP------P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWT----TDGIFVRELCD---LPLAEDIP 391 (954)
Q Consensus 326 ~~l~~------~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d----~~g~~~~~l~~---~~~~~~~p 391 (954)
.++.. . ..+..++|||||+.++...++... ...|++|| +++++.+.+.. ........
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~---------~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~ 310 (719)
T 1z68_A 240 QEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQN---------VSVLSICDFREDWQTWDCPKTQEHIEESRTGWAG 310 (719)
T ss_dssp EECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTT---------EEEEEEEEECSSSSSEECCGGGEEEEECSSSCSS
T ss_pred eEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccC---------eEEEEEEcccCCCCCCceEEEEecccccCCceEc
Confidence 24432 2 456789999997654443322211 12699999 77776655542 00000000
Q ss_pred ccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEE
Q 002194 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALV 471 (954)
Q Consensus 392 ~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~ 471 (954)
. .....+.|||||+.++++.... ++..+||++++ ++++.+.++...+.+..+.++ ||+.|+
T Consensus 311 ~------~~~~~~~~spdg~~l~~~~~~~---------~g~~~l~~~~~---~~~~~~~lt~~~~~v~~~~~~-d~~~i~ 371 (719)
T 1z68_A 311 G------FFVSTPVFSYDAISYYKIFSDK---------DGYKHIHYIKD---TVENAIQITSGKWEAINIFRV-TQDSLF 371 (719)
T ss_dssp S------SSCCCCEECTTSSCEEEEEECT---------TSCEEEEEESS---CSTTCEECSCSSSCEEEEEEE-CSSEEE
T ss_pred c------ccCCccEECCCCCeEEEEEEcc---------CCceEEEEEEC---CCCceEecccCceEEEEEEEE-eCCEEE
Confidence 0 0012678999999988863332 23558999986 667788888777777777778 999999
Q ss_pred EEEec--c-ccceEEEEEcCCCCCCCcEEEecC---CCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCC
Q 002194 472 YESWY--K-TRRTRTWVISPGSKDVAPRILFDR---SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGA 545 (954)
Q Consensus 472 ~~~~~--~-~~~~~l~~~d~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~ 545 (954)
|.+.. + ....+||.++.+++..++..++.. ....+.. ++|||||+++++.....
T Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~------~~~s~dg~~l~~~~s~~-------------- 431 (719)
T 1z68_A 372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYT------ASFSDYAKYYALVCYGP-------------- 431 (719)
T ss_dssp EEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEE------EEECGGGSSEEEEECCB--------------
T ss_pred EEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEE------EEECCCCCEEEEEcCCC--------------
Confidence 99875 1 234789999987642233444421 1111112 78999999998876221
Q ss_pred CCCCCCCeEEEEECCCCCeEEEeccC
Q 002194 546 TPEGNIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 546 ~~~~~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
..+.+++||+++++..+++...
T Consensus 432 ----~~p~~~l~d~~~g~~~~~~~~~ 453 (719)
T 1z68_A 432 ----GIPISTLHDGRTDQEIKILEEN 453 (719)
T ss_dssp ----SSCEEEEECSSSCCEEEEEECC
T ss_pred ----CCCeEEEEECCCCCEEEEeecc
Confidence 2346889999999877776654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-21 Score=218.45 Aligned_cols=256 Identities=15% Similarity=0.139 Sum_probs=186.0
Q ss_pred CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCC
Q 002194 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLG 278 (954)
Q Consensus 199 DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~ 278 (954)
.+++|+|+.... .+.....|+++|++++..+.++..... +..++|||||+.|++.....
T Consensus 142 ~~~~l~~~s~~~---~~~~~~~i~i~d~~g~~~~~l~~~~~~-----v~~~~~Spdg~~la~~s~~~------------- 200 (415)
T 2hqs_A 142 FRTRIAYVVQTN---GGQFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFES------------- 200 (415)
T ss_dssp TTCEEEEEEECS---SSSCCEEEEEEETTSCSCEEEEEESSC-----EEEEEECTTSSEEEEEECTT-------------
T ss_pred CCCEEEEEEecC---CCCccceEEEEcCCCCCCEEEeCCCCc-----ceeeEEcCCCCEEEEEEecC-------------
Confidence 488999987521 111127999999998888888765443 67899999999999872100
Q ss_pred CceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcc
Q 002194 279 PKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYS 356 (954)
Q Consensus 279 ~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~ 356 (954)
+...|+++|+ +|+.+.+... ..+..++|||||++|+|+.....
T Consensus 201 ---------------------------------~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g-- 245 (415)
T 2hqs_A 201 ---------------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG-- 245 (415)
T ss_dssp ---------------------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTS--
T ss_pred ---------------------------------CCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCC--
Confidence 2246999999 8887777765 67789999999999998874321
Q ss_pred cccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEE
Q 002194 357 FIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIY 436 (954)
Q Consensus 357 ~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~ 436 (954)
..+|++||+++++.+.++... ..+..++|||||+.|++.... +....||
T Consensus 246 --------~~~i~~~d~~~~~~~~l~~~~-------------~~~~~~~~spdg~~l~~~s~~----------~g~~~i~ 294 (415)
T 2hqs_A 246 --------SLNLYVMDLASGQIRQVTDGR-------------SNNTEPTWFPDSQNLAFTSDQ----------AGRPQVY 294 (415)
T ss_dssp --------SCEEEEEETTTCCEEECCCCS-------------SCEEEEEECTTSSEEEEEECT----------TSSCEEE
T ss_pred --------CceEEEEECCCCCEEeCcCCC-------------CcccceEECCCCCEEEEEECC----------CCCcEEE
Confidence 237999999988777766543 223578999999988887211 1234899
Q ss_pred EEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCee
Q 002194 437 TQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMR 516 (954)
Q Consensus 437 ~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 516 (954)
++++ .+++.+.++.....+..++|||||++|++....++ ...|++++++++ +...++... .+.. ++
T Consensus 295 ~~d~---~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g-~~~i~~~d~~~~--~~~~l~~~~--~~~~------~~ 360 (415)
T 2hqs_A 295 KVNI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG-QQHIAKQDLATG--GVQVLSSTF--LDET------PS 360 (415)
T ss_dssp EEET---TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS-CEEEEEEETTTC--CEEECCCSS--SCEE------EE
T ss_pred EEEC---CCCCEEEEecCCCcccCeEECCCCCEEEEEECcCC-ceEEEEEECCCC--CEEEecCCC--CcCC------eE
Confidence 9996 66677777666666778999999999999886643 367999999885 334444322 2222 78
Q ss_pred eccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcc
Q 002194 517 RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKE 573 (954)
Q Consensus 517 ~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 573 (954)
|+|||++|++..... ....||+||++++..++|+...+.
T Consensus 361 ~spdg~~l~~~s~~~------------------~~~~l~~~d~~g~~~~~l~~~~~~ 399 (415)
T 2hqs_A 361 LAPNGTMVIYSSSQG------------------MGSVLNLVSTDGRFKARLPATDGQ 399 (415)
T ss_dssp ECTTSSEEEEEEEET------------------TEEEEEEEETTSCCEEECCCSSSE
T ss_pred EcCCCCEEEEEEcCC------------------CccEEEEEECCCCcEEEeeCCCCC
Confidence 999999999987321 123699999999888888776643
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-21 Score=215.36 Aligned_cols=326 Identities=12% Similarity=0.088 Sum_probs=203.2
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
+..++|||||++|+|+.. .++..+||++++++++.++++...... ...+.|||||+.|+|..
T Consensus 38 ~~~~~~SpdG~~l~~~~~------~~g~~~l~~~d~~~~~~~~l~~~~~~~----~~~~~~spdg~~l~~~~-------- 99 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGD------FDGNRNYYLLNLETQQAVQLTEGKGDN----TFGGFISTDERAFFYVK-------- 99 (396)
T ss_dssp TTSCCBCTTSCEEEEEEC------TTSSCEEEEEETTTTEEEECCCSSCBC----TTTCEECTTSSEEEEEE--------
T ss_pred eecCcCCCCCCEEEEEEe------cCCCceEEEEECCCCcEEEeecCCCCc----cccceECCCCCEEEEEE--------
Confidence 678999999999999874 345678999999999999887655431 23488999999999871
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-cc-ccc-----------
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AV-YTS----------- 336 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~-~~~----------- 336 (954)
...+||++++ +|+.+++... .. ...
T Consensus 100 -----------------------------------------~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 138 (396)
T 3c5m_A 100 -----------------------------------------NELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTK 138 (396)
T ss_dssp -----------------------------------------TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSE
T ss_pred -----------------------------------------cCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCc
Confidence 1125888888 7776666542 11 111
Q ss_pred --------cccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeecc
Q 002194 337 --------LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS 408 (954)
Q Consensus 337 --------~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wsp 408 (954)
+.|||||+++++..... ......|+++|+++++.+.+.... ..+..+.|+|
T Consensus 139 ~~~~~~~~~~~spdg~~~~~~~~~~--------~~~~~~l~~~d~~~g~~~~~~~~~-------------~~~~~~~~sp 197 (396)
T 3c5m_A 139 LVGIEILKRDWQPLTSWEKFAEFYH--------TNPTCRLIKVDIETGELEVIHQDT-------------AWLGHPIYRP 197 (396)
T ss_dssp EEEEEEEGGGCCCCCSHHHHHHHHH--------TCCCEEEEEEETTTCCEEEEEEES-------------SCEEEEEEET
T ss_pred cccccccccccCCCCcceeeeeecc--------CCCcceEEEEECCCCcEEeeccCC-------------cccccceECC
Confidence 45566666555443100 012348999999988777666421 2235688999
Q ss_pred -CCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec--ccccCceeeccCCceEEEEEecccc-ceEEE
Q 002194 409 -DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRYGGISWCDDSLALVYESWYKTR-RTRTW 484 (954)
Q Consensus 409 -Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--~~~~~~~~~spDg~~l~~~~~~~~~-~~~l~ 484 (954)
||+.|+|... ++.. .....||++++ ++++.+.+... ...+..++|||||++|+|.+...+. ...|+
T Consensus 198 ~dg~~l~~~~~--~~~~-----~~~~~l~~~d~---~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 198 FDDSTVGFCHE--GPHD-----LVDARMWLVNE---DGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp TEEEEEEEEEC--SCSS-----SCSCCCEEEET---TSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred CCCCEEEEEec--CCCC-----CCCceEEEEEC---CCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 8988888732 1100 11257899996 66666777553 2346678999999999998765432 24599
Q ss_pred EEcCCCCCCCcEEEecCCCCCccCCCCCCCeeecc-CCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCC
Q 002194 485 VISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTS-TGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (954)
Q Consensus 485 ~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 563 (954)
++|+.++ +...+...... . +.|+| ||+++++..... + +.....+.........||+||+++++
T Consensus 268 ~~d~~~g--~~~~l~~~~~~--------~-~~~s~~dg~~l~~~~~~~--p---~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 268 KANPETL--ENEEVMVMPPC--------S-HLMSNFDGSLMVGDGCDA--P---VDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp EECTTTC--CEEEEEECCSE--------E-EEEECSSSSEEEEEECCC---------------CCCCCCEEEEEETTTTB
T ss_pred EEECCCC--CeEEeeeCCCC--------C-CCccCCCCceEEEecCCc--c---eeeccccccccCCCCcEEEEecccCc
Confidence 9999875 44444432211 1 67999 999887754110 0 00000000001124579999999998
Q ss_pred eEEEeccCcc-cccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEee
Q 002194 564 KERIWESDKE-KYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQIT 625 (954)
Q Consensus 564 ~~~l~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt 625 (954)
.++|+..... ..+.. ........+.|||||+.+++..... ...++|.+++.+++.+.+.
T Consensus 332 ~~~l~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~s~~~-~~~~l~~~~~~~~~~~~~~ 391 (396)
T 3c5m_A 332 AQKLCKHSTSWDVLDG--DRQITHPHPSFTPNDDGVLFTSDFE-GVPAIYIADVPESYKHLEH 391 (396)
T ss_dssp CCEEEECCCCCCCBTT--BSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCTTCC----
T ss_pred eEEccCCCCccccccc--cccCCCCCceEccCCCeEEEEecCC-CCceEEEEEEccccccccc
Confidence 8888765421 00000 0000112367999999998877654 3568999998887766554
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-21 Score=216.07 Aligned_cols=325 Identities=14% Similarity=0.095 Sum_probs=203.5
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
...++|||||++|+|+... .+ . ..||++++.+ ++.++++.. ...
T Consensus 38 ~~~~~~SpdG~~l~~~~~~----------------------~g--~------~~l~~~d~~~----~~~~~l~~~--~~~ 81 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDF----------------------DG--N------RNYYLLNLET----QQAVQLTEG--KGD 81 (396)
T ss_dssp TTSCCBCTTSCEEEEEECT----------------------TS--S------CEEEEEETTT----TEEEECCCS--SCB
T ss_pred eecCcCCCCCCEEEEEEec----------------------CC--C------ceEEEEECCC----CcEEEeecC--CCC
Confidence 5678999999999999763 11 1 3689999854 566666432 123
Q ss_pred cc-ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 191 LN-FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 191 ~~-~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.. .+.|||||++|+|+.. ..+||++++++++.++++..+. .|++||+.|++........
T Consensus 82 ~~~~~~~spdg~~l~~~~~---------~~~l~~~d~~~~~~~~~~~~~~----------~~~~~g~~l~~~~~~~~~~- 141 (396)
T 3c5m_A 82 NTFGGFISTDERAFFYVKN---------ELNLMKVDLETLEEQVIYTVDE----------EWKGYGTWVANSDCTKLVG- 141 (396)
T ss_dssp CTTTCEECTTSSEEEEEET---------TTEEEEEETTTCCEEEEEECCT----------TEEEEEEEEECTTSSEEEE-
T ss_pred ccccceECCCCCEEEEEEc---------CCcEEEEECCCCCcEEEEeccc----------ccCCCCCEEEeccCCcccc-
Confidence 33 4899999999999863 2379999999999888865443 2889999888751100000
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccc------cccceEEEEEe-CCceeEcCCC-ccccccccCC
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDY------YATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSP 341 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~------~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~Sp 341 (954)
... .......|+..+.+ .....||++++ +|+.+.+... ..+..+.|||
T Consensus 142 -----------~~~-------------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp 197 (396)
T 3c5m_A 142 -----------IEI-------------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRP 197 (396)
T ss_dssp -----------EEE-------------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEET
T ss_pred -----------ccc-------------cccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECC
Confidence 000 00001111111111 13467999999 8877777654 5677899999
Q ss_pred -CCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002194 342 -DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (954)
Q Consensus 342 -DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~ 420 (954)
||++|+|.+.. +. ......|+++++++++.+.+...... ..+..++|||||+.|+|.....
T Consensus 198 ~dg~~l~~~~~~-~~------~~~~~~l~~~d~~~~~~~~l~~~~~~-----------~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 198 FDDSTVGFCHEG-PH------DLVDARMWLVNEDGSNVRKIKEHAEG-----------ESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp TEEEEEEEEECS-CS------SSCSCCCEEEETTSCCCEESSCCCTT-----------EEEEEEEECTTSSCEEEEEEET
T ss_pred CCCCEEEEEecC-CC------CCCCceEEEEECCCCceeEeeccCCC-----------ccccceEECCCCCEEEEEecCC
Confidence 89999998742 11 11124799999988776666542100 1234689999999988873321
Q ss_pred cCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeecc-CCceEEEEEec------------cccceEEEEEc
Q 002194 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD-DSLALVYESWY------------KTRRTRTWVIS 487 (954)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~sp-Dg~~l~~~~~~------------~~~~~~l~~~d 487 (954)
. .....|+++++ .+++.+.+...... . +.|+| ||+.|++.... ......||+++
T Consensus 260 ~--------~~~~~l~~~d~---~~g~~~~l~~~~~~-~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d 326 (396)
T 3c5m_A 260 G--------QTDRVIYKANP---ETLENEEVMVMPPC-S-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLN 326 (396)
T ss_dssp T--------TCCEEEEEECT---TTCCEEEEEECCSE-E-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEE
T ss_pred C--------CccceEEEEEC---CCCCeEEeeeCCCC-C-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEe
Confidence 1 11234999996 66676666544332 2 89999 99988875421 01236799999
Q ss_pred CCCCCCCcEEEecCCCCC------ccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCC
Q 002194 488 PGSKDVAPRILFDRSSED------VYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINT 561 (954)
Q Consensus 488 ~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 561 (954)
++++ +.+.++...... ... ....++|+|||++|+|.... .....||.+|+++
T Consensus 327 ~~~~--~~~~l~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~s~~------------------~~~~~l~~~~~~~ 384 (396)
T 3c5m_A 327 TKAK--SAQKLCKHSTSWDVLDGDRQI--THPHPSFTPNDDGVLFTSDF------------------EGVPAIYIADVPE 384 (396)
T ss_dssp TTTT--BCCEEEECCCCCCCBTTBSST--TCCCCEECTTSSEEEEEECT------------------TSSCEEEEEECCT
T ss_pred cccC--ceEEccCCCCccccccccccC--CCCCceEccCCCeEEEEecC------------------CCCceEEEEEEcc
Confidence 9886 344554433210 000 01116799999999998721 1245799999998
Q ss_pred CCeEEEe
Q 002194 562 GSKERIW 568 (954)
Q Consensus 562 g~~~~l~ 568 (954)
++.+.+.
T Consensus 385 ~~~~~~~ 391 (396)
T 3c5m_A 385 SYKHLEH 391 (396)
T ss_dssp TCC----
T ss_pred ccccccc
Confidence 8766543
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-21 Score=214.14 Aligned_cols=244 Identities=14% Similarity=0.149 Sum_probs=166.8
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEc-CCCCC------------------CCCCCCccEEEEECCCCCcCcccCccccCCCC
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYL-PPGYD------------------PSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPN 695 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~-P~~~~------------------~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~ 695 (954)
..+..+.+++.+.+| +.+.+|+ |+... ....++.|+||++|||++..+....
T Consensus 60 ~~v~~~dv~~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~~------- 130 (365)
T 3ebl_A 60 EGVSSFDHIIDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASS------- 130 (365)
T ss_dssp TTEEEEEEEEETTTT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTTB-------
T ss_pred CCCceeeEEecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCch-------
Confidence 446678899998888 7788887 87531 1123468999999998654322111
Q ss_pred CCCCcccHHHHHHHHC-CcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC----CCCCC-cEEEEeeChH
Q 002194 696 EFPRIGSTSVLLWLAR-GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG----VAHPS-KIAVGGHSYG 769 (954)
Q Consensus 696 ~~~~~~~~~~~~la~~-G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~----~~d~~-ri~l~G~S~G 769 (954)
.....++..|+++ ||+|+.++|+...++ .++..++|+.++++|+.++. .+|++ ||+|+|+|+|
T Consensus 131 ---~~~~~~~~~la~~~g~~Vv~~dyR~~p~~--------~~~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~G 199 (365)
T 3ebl_A 131 ---TIYDSLCRRFVKLSKGVVVSVNYRRAPEH--------RYPCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSG 199 (365)
T ss_dssp ---HHHHHHHHHHHHHHTSEEEEECCCCTTTS--------CTTHHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHH
T ss_pred ---hhHHHHHHHHHHHCCCEEEEeeCCCCCCC--------CCcHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCcc
Confidence 0012355677775 999999887644322 23467899999999999764 68999 9999999999
Q ss_pred HHHHHHHHHhCCC---cccEEEEeccCCCCCCCCCCCc--------c--ccchhhhcH------HHHHhcCccc-ccCCC
Q 002194 770 AFMTANLLAHAPH---LFCCGIARSGAYNRTLTPFGFQ--------N--EDRTLWEAT------STYVEMSPFM-SANKL 829 (954)
Q Consensus 770 G~~a~~~a~~~p~---~~~a~v~~~~~~~~~~~~~~~~--------~--~~~~~~~~~------~~~~~~sp~~-~~~~~ 829 (954)
|++|+.++.+.++ .++++|+++|+++......... . .....|... ......+|+. ....+
T Consensus 200 G~la~~~a~~~~~~~~~~~g~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 279 (365)
T 3ebl_A 200 GNIAHHVAVRAADEGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRL 279 (365)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTCCCC
T ss_pred HHHHHHHHHHHHhcCCceeeEEEEccccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhh
Confidence 9999999987654 7999999999877432110000 0 000011000 0001112332 23344
Q ss_pred C----CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC---CcccHHHHHHHHHHHHHHhcccCC
Q 002194 830 K----KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA---ARESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 830 ~----~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~---~~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
+ .|+||+||+.|.. ..++.+++++|+..|+++++++||+++|.+. ..+...++++.+.+||+++++...
T Consensus 280 ~~~~~pP~Li~~G~~D~l----~~~~~~~~~~L~~~g~~v~l~~~~g~~H~f~~~~~~~~~~~~~~~i~~Fl~~~~~~~~ 355 (365)
T 3ebl_A 280 GGLPFAKSLIIVSGLDLT----CDRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLNANLYYGS 355 (365)
T ss_dssp TTSCCCCEEEEEETTSTT----HHHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSSCSHHHHHHHHHHHHHHHHHCC---
T ss_pred ccCCCCCEEEEEcCcccc----hhHHHHHHHHHHHCCCCEEEEEECCCcEEEeccCCCHHHHHHHHHHHHHHHHhhhccc
Confidence 4 5899999999965 4567899999999999999999999999875 345567899999999999986543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-20 Score=230.04 Aligned_cols=336 Identities=13% Similarity=0.121 Sum_probs=215.3
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCC
Q 002194 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (954)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~ 188 (954)
..+..++|||| ++++|.... .|++|++.+ ++.++++.. .
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~----------------------------------~i~~~d~~~----~~~~~l~~~--~ 120 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQG----------------------------------GLVGFDMLA----RKVTYLFDT--N 120 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETT----------------------------------EEEEEETTT----TEEEEEECC--T
T ss_pred cCceeEEECCC-CeEEEEECC----------------------------------EEEEEECCC----CceEEccCC--c
Confidence 35778999999 888888653 899999854 556666542 2
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC-----CceeecccCCCccc-cc---------cccceeEec
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-----GKARPLFQSPDIYL-NA---------IFDNFVWVN 253 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~-----g~~~~lt~~~~~~~-~~---------~~~~~~wsp 253 (954)
..+..++|||||++|+|+. ..+||++++++ ++.++++......+ ++ .+..+.|||
T Consensus 121 ~~~~~~~~SpdG~~la~~~----------~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp 190 (706)
T 2z3z_A 121 EETASLDFSPVGDRVAYVR----------NHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP 190 (706)
T ss_dssp TCCTTCEECTTSSEEEEEE----------TTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT
T ss_pred ccccCCcCCCCCCEEEEEE----------CCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC
Confidence 4688899999999999964 36899999999 88888876654321 00 025899999
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-
Q 002194 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP- 331 (954)
Q Consensus 254 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~- 331 (954)
||+.|++...+...... ...... ......... ..++..+. -....+|+++|+ +|+.+.+...
T Consensus 191 Dg~~la~~~~d~~~~~~-~~~~~~-----~~~~~~~~~-------~~y~~~g~---~~~~~~l~~~d~~~~~~~~~~~~~ 254 (706)
T 2z3z_A 191 KGSCLAFYRMDQSMVKP-TPIVDY-----HPLEAESKP-------LYYPMAGT---PSHHVTVGIYHLATGKTVYLQTGE 254 (706)
T ss_dssp TSSEEEEEEEECTTSCC-EEEEEC-----CSSSCEEEE-------ECCCBTTS---CCCEEEEEEEETTTTEEEECCCCS
T ss_pred CCCEEEEEEECCCCCce-EEeecc-----CCCCCceEE-------eeCCCCCC---CCCeeEEEEEECCCCceEeeccCC
Confidence 99999988533222100 000000 000000000 00111000 013467999999 7877666532
Q ss_pred ---ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeec
Q 002194 332 ---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (954)
Q Consensus 332 ---~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~ws 407 (954)
..+..++|||||++|++.+..... ....+++||++++ ..+.+......... .....++||
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~~--------~~~~v~~~d~~~g~~~~~~~~~~~~~~~--------~~~~~~~~s 318 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRAQ--------NECKVNAYDAETGRFVRTLFVETDKHYV--------EPLHPLTFL 318 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTTS--------CEEEEEEEETTTCCEEEEEEEEECSSCC--------CCCSCCEEC
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCCC--------CeeEEEEEECCCCceeeEEEEccCCCeE--------CccCCceee
Confidence 456789999999999998754321 1237999999977 66655432111000 012467899
Q ss_pred c--CCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCc-eeeccCCceEEEEEeccc-cceEE
Q 002194 408 S--DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG-ISWCDDSLALVYESWYKT-RRTRT 483 (954)
Q Consensus 408 p--Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~-~~~spDg~~l~~~~~~~~-~~~~l 483 (954)
| ||+. ++.. .. ++..+||.++. +++..+.++.+.+.+.. ++|||||+.|++.+..++ ....|
T Consensus 319 p~~dg~~-l~~~-~~---------~g~~~l~~~~~---~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l 384 (706)
T 2z3z_A 319 PGSNNQF-IWQS-RR---------DGWNHLYLYDT---TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF 384 (706)
T ss_dssp TTCSSEE-EEEE-CT---------TSSCEEEEEET---TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred cCCCCEE-EEEE-cc---------CCccEEEEEEC---CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence 9 9983 3331 11 23457888884 66677788777776665 799999999999886653 23689
Q ss_pred EEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCC
Q 002194 484 WVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (954)
Q Consensus 484 ~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 563 (954)
|.++++++ ..+.++.. ..+.. ++|||||+++++..... ...+.|++||+++++
T Consensus 385 ~~~d~~~~--~~~~l~~~--~~~~~------~~~spdg~~l~~~~~~~-----------------~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 385 YCIDIKGG--KTKDLTPE--SGMHR------TQLSPDGSAIIDIFQSP-----------------TVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEETTCC--CCEESCCS--SSEEE------EEECTTSSEEEEEEECS-----------------SCSCEEEEEESSSCE
T ss_pred EEEEcCCC--CceeccCC--CceEE------EEECCCCCEEEEEecCC-----------------CCCcEEEEEECCCCe
Confidence 99999885 34555421 22222 78999999999886321 123459999999887
Q ss_pred eEEEe
Q 002194 564 KERIW 568 (954)
Q Consensus 564 ~~~l~ 568 (954)
.+.++
T Consensus 438 ~~~~~ 442 (706)
T 2z3z_A 438 HTLLE 442 (706)
T ss_dssp EEEEE
T ss_pred Eeecc
Confidence 44443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.1e-21 Score=215.38 Aligned_cols=249 Identities=14% Similarity=0.114 Sum_probs=182.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..|++|++. + +..+.++... ..+..++|||||++|+|.+. .++...|+++|+++++.++++.....
T Consensus 159 ~~i~i~d~~--g--~~~~~l~~~~--~~v~~~~~Spdg~~la~~s~------~~~~~~i~~~d~~tg~~~~l~~~~~~-- 224 (415)
T 2hqs_A 159 YELRVSDYD--G--YNQFVVHRSP--QPLMSPAWSPDGSKLAYVTF------ESGRSALVIQTLANGAVRQVASFPRH-- 224 (415)
T ss_dssp EEEEEEETT--S--CSCEEEEEES--SCEEEEEECTTSSEEEEEEC------TTSSCEEEEEETTTCCEEEEECCSSC--
T ss_pred ceEEEEcCC--C--CCCEEEeCCC--CcceeeEEcCCCCEEEEEEe------cCCCcEEEEEECCCCcEEEeecCCCc--
Confidence 379999984 3 4556666533 46889999999999999874 33467999999999998888765542
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
+..++|||||+.|+++... + +..+||++|+
T Consensus 225 ---~~~~~~spdg~~la~~~~~---------------------------------------~-------g~~~i~~~d~~ 255 (415)
T 2hqs_A 225 ---NGAPAFSPDGSKLAFALSK---------------------------------------T-------GSLNLYVMDLA 255 (415)
T ss_dssp ---EEEEEECTTSSEEEEEECT---------------------------------------T-------SSCEEEEEETT
T ss_pred ---ccCEEEcCCCCEEEEEEec---------------------------------------C-------CCceEEEEECC
Confidence 6689999999999977210 0 3456999999
Q ss_pred CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
+|+.++++.. ..+..++|||||++|++.+.... ...|++||+++++.+.++... ..
T Consensus 256 ~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g----------~~~i~~~d~~~~~~~~l~~~~-------------~~ 312 (415)
T 2hqs_A 256 SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG----------RPQVYKVNINGGAPQRITWEG-------------SQ 312 (415)
T ss_dssp TCCEEECCCCSSCEEEEEECTTSSEEEEEECTTS----------SCEEEEEETTSSCCEECCCSS-------------SE
T ss_pred CCCEEeCcCCCCcccceEECCCCCEEEEEECCCC----------CcEEEEEECCCCCEEEEecCC-------------Cc
Confidence 8888888776 67788999999999999985321 227999999987766665432 12
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
+..++|||||+.|++.... +....|+++++ .+++.+.++... .+..++|+|||+.|++.+..++ .
T Consensus 313 ~~~~~~spdG~~l~~~~~~----------~g~~~i~~~d~---~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~-~ 377 (415)
T 2hqs_A 313 NQDADVSSDGKFMVMVSSN----------GGQQHIAKQDL---ATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGM-G 377 (415)
T ss_dssp EEEEEECTTSSEEEEEEEC----------SSCEEEEEEET---TTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETT-E
T ss_pred ccCeEECCCCCEEEEEECc----------CCceEEEEEEC---CCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCC-c
Confidence 3468999999988887221 12457999996 666777776554 6778999999999999887654 3
Q ss_pred eEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCC
Q 002194 481 TRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTG 521 (954)
Q Consensus 481 ~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG 521 (954)
..||+++++++ ....++. ....+.. ++|||--
T Consensus 378 ~~l~~~d~~g~--~~~~l~~-~~~~v~~------~~~~~~~ 409 (415)
T 2hqs_A 378 SVLNLVSTDGR--FKARLPA-TDGQVKF------PAWSPYL 409 (415)
T ss_dssp EEEEEEETTSC--CEEECCC-SSSEEEE------EEECCCC
T ss_pred cEEEEEECCCC--cEEEeeC-CCCCCcC------Ccccccc
Confidence 68999999874 3344433 2233333 7788754
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-21 Score=206.88 Aligned_cols=237 Identities=14% Similarity=0.096 Sum_probs=165.2
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCC-CCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDP-SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~-~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (954)
+..+.+++. .+|..+.+.+|+|+.... ..+++.|+||++|||.+..+. ... ....+..|+++||.|
T Consensus 2 m~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~p~vv~~HGgg~~~~~--------~~~----~~~~~~~l~~~G~~v 68 (277)
T 3bxp_A 2 MQVEQRTLN-TAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHS--------GRE----EAPIATRMMAAGMHT 68 (277)
T ss_dssp EEEEEEEEC-STTCCEEEEEEEECCCCSSSCCCCEEEEEEECCSTTTSCC--------CTT----HHHHHHHHHHTTCEE
T ss_pred cceEEEEec-cCCCcceEEEEeCCcccccccCCCccEEEEECCCccccCC--------Ccc----chHHHHHHHHCCCEE
Confidence 345677774 577889999999973210 112358999999997533221 111 124566788899999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhC------------
Q 002194 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHA------------ 780 (954)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~------------ 780 (954)
+.++++ |+|... . .....+.|+.++++++.++. .+|+++|+|+|||+||.+|+.++.+.
T Consensus 69 ~~~d~~---g~g~~~--~-~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~ 142 (277)
T 3bxp_A 69 VVLNYQ---LIVGDQ--S-VYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLD 142 (277)
T ss_dssp EEEECC---CSTTTC--C-CTTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCT
T ss_pred EEEecc---cCCCCC--c-cCchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcc
Confidence 996554 444211 1 23466788999999998763 36788999999999999999999985
Q ss_pred --CCcccEEEEeccCCCCCCCCCCCccccchhh-hcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHH
Q 002194 781 --PHLFCCGIARSGAYNRTLTPFGFQNEDRTLW-EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (954)
Q Consensus 781 --p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~ 857 (954)
+.+++++|+++|..+.... +... .... .....+...+|...+.++.+|+|++||++|.++| ++++.+++++
T Consensus 143 ~~~~~~~~~v~~~p~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~~~ 216 (277)
T 3bxp_A 143 HYQGQHAAIILGYPVIDLTAG---FPTT-SAARNQITTDARLWAAQRLVTPASKPAFVWQTATDESVP--PINSLKYVQA 216 (277)
T ss_dssp TCCCCCSEEEEESCCCBTTSS---SSSS-HHHHHHHCSCGGGSBGGGGCCTTSCCEEEEECTTCCCSC--THHHHHHHHH
T ss_pred cccCCcCEEEEeCCcccCCCC---CCCc-cccchhccchhhhcCHhhccccCCCCEEEEeeCCCCccC--hHHHHHHHHH
Confidence 6789999999998763321 1110 0000 0001223457777778888999999999999998 9999999999
Q ss_pred HHhCCCcEEEEEeCCCCCcCCCcc--------------cHHHHHHHHHHHHHHhc
Q 002194 858 LKGHGALCRLVILPFESHGYAARE--------------SIMHVLWETDRWLQKYC 898 (954)
Q Consensus 858 l~~~g~~~~~~~~~~~~H~~~~~~--------------~~~~~~~~i~~fl~~~l 898 (954)
++..+.+++++++++++|.+.... ....+++.+.+||+++.
T Consensus 217 l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 271 (277)
T 3bxp_A 217 MLQHQVATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQG 271 (277)
T ss_dssp HHHTTCCEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCeEEEEEeCCCCcccccccccccCccccccccchHHHHHHHHHHHHHhcc
Confidence 999999999999999999764332 24677889999998864
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=240.05 Aligned_cols=273 Identities=8% Similarity=-0.003 Sum_probs=190.6
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..|.|+|| +|+|+.. .++..+||.++.+++..++++.... +..+.|||||+.|++.
T Consensus 205 ~v~~~~~s~d--~l~~~~~------~dg~~~l~~~~~~g~~~~~l~~~~~------~~~~~~SpDG~~la~~-------- 262 (1045)
T 1k32_A 205 HVSSPVIVGH--RIYFITD------IDGFGQIYSTDLDGKDLRKHTSFTD------YYPRHLNTDGRRILFS-------- 262 (1045)
T ss_dssp CCEEEEEETT--EEEEEEC------TTSSCEEEEEETTSCSCEECCCCCS------SCEEEEEESSSCEEEE--------
T ss_pred cccceEEeCC--EEEEEEe------ccCceEEEEEeCCCCcceEecCCCC------cceeeEcCCCCEEEEE--------
Confidence 4556778876 7777653 4567899999998888888876553 4467999999999986
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC------------ccccc
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP------------AVYTS 336 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~------------~~~~~ 336 (954)
....||++++ .+....+... ..+..
T Consensus 263 ------------------------------------------~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~ 300 (1045)
T 1k32_A 263 ------------------------------------------KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFA 300 (1045)
T ss_dssp ------------------------------------------ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGE
T ss_pred ------------------------------------------eCCEEEEecCCceEeeeeccCcccccccccccccccce
Confidence 1234666666 3444433331 25778
Q ss_pred cccC-CCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 337 LDPS-PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 337 ~~~S-pDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
++|| |||++|++.+ . .++++|++.++..+.+..... ..+..++|+ ||+.++|
T Consensus 301 ~~~S~pdG~~la~~~-~-------------~~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~s-dg~~l~~ 353 (1045)
T 1k32_A 301 EDFSPLDGDLIAFVS-R-------------GQAFIQDVSGTYVLKVPEPLR------------IRYVRRGGD-TKVAFIH 353 (1045)
T ss_dssp EEEEECGGGCEEEEE-T-------------TEEEEECTTSSBEEECSCCSC------------EEEEEECSS-SEEEEEE
T ss_pred eeecCCCCCEEEEEE-c-------------CEEEEEcCCCCceEEccCCCc------------ceEEeeeEc-CCCeEEE
Confidence 9999 9999999988 1 289999998877666654321 034578999 9999888
Q ss_pred EEEeccCCCccccccCCCeEE-EEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCC
Q 002194 416 WAETQDGGDAKVEVTPRDIIY-TQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVA 494 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~ 494 (954)
. +....+| ++++ ++++.+.++.....+..++|||||++|++.... ..|+++|+.++ +
T Consensus 354 ~-------------s~~~~l~~~~d~---~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~----~~v~~~d~~tg--~ 411 (1045)
T 1k32_A 354 G-------------TREGDFLGIYDY---RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDR----FEIMTVDLETG--K 411 (1045)
T ss_dssp E-------------ETTEEEEEEEET---TTCCEEECCCCCCSEEEEEECTTSSEEEEEETT----SEEEEEETTTC--C
T ss_pred E-------------ECCCceEEEEEC---CCCCceEecCCccceeeeEECCCCCEEEEECCC----CeEEEEECCCC--c
Confidence 7 2245788 8986 677777777555667889999999999988654 36889999885 4
Q ss_pred cEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCccc
Q 002194 495 PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEK 574 (954)
Q Consensus 495 ~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~ 574 (954)
...+.......+.. ++|||||++|++.....+ +.........|++||+++++.+.++.....
T Consensus 412 ~~~~~~~~~~~v~~------~~~SpDG~~la~~~~~~~-----------~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~- 473 (1045)
T 1k32_A 412 PTVIERSREAMITD------FTISDNSRFIAYGFPLKH-----------GETDGYVMQAIHVYDMEGRKIFAATTENSH- 473 (1045)
T ss_dssp EEEEEECSSSCCCC------EEECTTSCEEEEEEEECS-----------STTCSCCEEEEEEEETTTTEEEECSCSSSB-
T ss_pred eEEeccCCCCCccc------eEECCCCCeEEEEecCcc-----------ccccCCCCCeEEEEECCCCcEEEeeCCCcc-
Confidence 45555333333333 889999999999874210 000001234699999999987777655422
Q ss_pred ccceeEEeccCCccccccccCCEEEEEEec
Q 002194 575 YYETTVALMSDQTEGDLYLNQLKILTSKES 604 (954)
Q Consensus 575 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s 604 (954)
.. .+.|||||+.+++....
T Consensus 474 ----~~-------~~~~spdG~~l~~~s~~ 492 (1045)
T 1k32_A 474 ----DY-------APAFDADSKNLYYLSYR 492 (1045)
T ss_dssp ----EE-------EEEECTTSCEEEEEESC
T ss_pred ----cC-------CceEcCCCCEEEEEecc
Confidence 11 25799999999886653
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=197.19 Aligned_cols=213 Identities=17% Similarity=0.169 Sum_probs=163.0
Q ss_pred ceE--EEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEE
Q 002194 638 QKE--LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (954)
Q Consensus 638 ~~~--~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (954)
+.| .+++++.+| ++.++++.|++ .+.|+||++||.+...+. .........+..|+++||.|
T Consensus 20 ~~e~~~~~~~~~~g-~l~~~~~~p~~------~~~p~vv~~HG~~~~~~~----------~~~~~~~~~~~~l~~~G~~v 82 (249)
T 2i3d_A 20 QGHMPEVIFNGPAG-RLEGRYQPSKE------KSAPIAIILHPHPQFGGT----------MNNQIVYQLFYLFQKRGFTT 82 (249)
T ss_dssp ----CEEEEEETTE-EEEEEEECCSS------TTCCEEEEECCCGGGTCC----------TTSHHHHHHHHHHHHTTCEE
T ss_pred cCceeEEEEECCCc-eEEEEEEcCCC------CCCCEEEEECCCcccCCC----------ccchHHHHHHHHHHHCCCEE
Confidence 345 889998888 89999998853 237999999995321110 00001124567788999999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
+. .+.+|+|.+..........++|+.++++++.++. .++++++++|||+||.+++.++.++|+ ++++|+++|..+
T Consensus 83 ~~---~d~~g~G~s~~~~~~~~~~~~d~~~~i~~l~~~~-~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~ 157 (249)
T 2i3d_A 83 LR---FNFRSIGRSQGEFDHGAGELSDAASALDWVQSLH-PDSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPN 157 (249)
T ss_dssp EE---ECCTTSTTCCSCCCSSHHHHHHHHHHHHHHHHHC-TTCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTT
T ss_pred EE---ECCCCCCCCCCCCCCccchHHHHHHHHHHHHHhC-CCCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchh
Confidence 99 4556677665433222344599999999999885 477899999999999999999999988 999999998754
Q ss_pred CCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHh-CCCcEEEEEeCCCC
Q 002194 796 RTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG-HGALCRLVILPFES 874 (954)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~ 874 (954)
... ...+.++++|+|++||++|..+| .+.++++++.++. .+.+++++++++++
T Consensus 158 ~~~------------------------~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 211 (249)
T 2i3d_A 158 TYD------------------------FSFLAPCPSSGLIINGDADKVAP--EKDVNGLVEKLKTQKGILITHRTLPGAN 211 (249)
T ss_dssp TSC------------------------CTTCTTCCSCEEEEEETTCSSSC--HHHHHHHHHHHTTSTTCCEEEEEETTCC
T ss_pred hhh------------------------hhhhcccCCCEEEEEcCCCCCCC--HHHHHHHHHHHhhccCCceeEEEECCCC
Confidence 210 12345678999999999999998 9999999999986 45689999999999
Q ss_pred CcCCCcccHHHHHHHHHHHHHHhccc
Q 002194 875 HGYAARESIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 875 H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (954)
|.+. +....+.+.+.+||++++..
T Consensus 212 H~~~--~~~~~~~~~i~~fl~~~l~~ 235 (249)
T 2i3d_A 212 HFFN--GKVDELMGECEDYLDRRLNG 235 (249)
T ss_dssp TTCT--TCHHHHHHHHHHHHHHHHTT
T ss_pred cccc--cCHHHHHHHHHHHHHHhcCC
Confidence 9985 56788899999999999864
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-21 Score=210.75 Aligned_cols=236 Identities=16% Similarity=0.109 Sum_probs=170.0
Q ss_pred cCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCc
Q 002194 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (954)
Q Consensus 634 ~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (954)
...+..+.+++++.+|.+|.++++.|++. .++.|+||++||+..... + ......|+++||
T Consensus 63 ~~~~~~~~~~~~~~dg~~i~~~~~~P~~~----~~~~p~vv~~HG~g~~~~------------~----~~~~~~l~~~G~ 122 (337)
T 1vlq_A 63 LKTVEAYDVTFSGYRGQRIKGWLLVPKLE----EEKLPCVVQYIGYNGGRG------------F----PHDWLFWPSMGY 122 (337)
T ss_dssp CSSEEEEEEEEECGGGCEEEEEEEEECCS----CSSEEEEEECCCTTCCCC------------C----GGGGCHHHHTTC
T ss_pred CCCeEEEEEEEEcCCCCEEEEEEEecCCC----CCCccEEEEEcCCCCCCC------------C----chhhcchhhCCC
Confidence 34456889999999999999999999763 235899999999742211 1 112346788999
Q ss_pred EEEEcCCCCCCCCCC--cccc----------------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChH
Q 002194 714 AILGGPTTPIIGEGD--EEAN----------------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYG 769 (954)
Q Consensus 714 ~V~~~~~~~~~G~G~--~~~~----------------------~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~G 769 (954)
+|+.+++++..+.+. +... .......+.|+.++++++.+++.+|+++|+++|+|+|
T Consensus 123 ~v~~~d~rG~g~s~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~G 202 (337)
T 1vlq_A 123 ICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQG 202 (337)
T ss_dssp EEEEECCTTCCCSSSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHH
T ss_pred EEEEecCCCCCCcccCCCCcccccccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHH
Confidence 999966654432211 1111 1223578999999999999998889999999999999
Q ss_pred HHHHHHHHHhCCCcccEEEEeccCCCCCCC-----CCCCccccchhh--------hcHHHHHhcCcccccCCCCCCEEEE
Q 002194 770 AFMTANLLAHAPHLFCCGIARSGAYNRTLT-----PFGFQNEDRTLW--------EATSTYVEMSPFMSANKLKKPILLV 836 (954)
Q Consensus 770 G~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-----~~~~~~~~~~~~--------~~~~~~~~~sp~~~~~~~~~P~Lii 836 (954)
|.+++.++.+.| +++++|+.+|....... ...........+ .....+..++|...+.++++|+|++
T Consensus 203 G~la~~~a~~~p-~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii 281 (337)
T 1vlq_A 203 GGIALAVSALSK-KAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFS 281 (337)
T ss_dssp HHHHHHHHHHCS-SCCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEE
T ss_pred HHHHHHHHhcCC-CccEEEECCCcccCHHHHHhcCCCcchHHHHHHHHhCchhHHHHHHhhhhccHHHHHHHcCCCEEEE
Confidence 999999999997 59999998885432100 000000000000 0011234456777888999999999
Q ss_pred EeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 837 HGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 837 ~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
||++|.++| ++++.+++++++. +++++++++++|.+. .....+.+.+||.++|.
T Consensus 282 ~G~~D~~~p--~~~~~~~~~~l~~---~~~~~~~~~~gH~~~----~~~~~~~~~~fl~~~l~ 335 (337)
T 1vlq_A 282 VGLMDNICP--PSTVFAAYNYYAG---PKEIRIYPYNNHEGG----GSFQAVEQVKFLKKLFE 335 (337)
T ss_dssp EETTCSSSC--HHHHHHHHHHCCS---SEEEEEETTCCTTTT----HHHHHHHHHHHHHHHHC
T ss_pred eeCCCCCCC--chhHHHHHHhcCC---CcEEEEcCCCCCCCc----chhhHHHHHHHHHHHHh
Confidence 999999998 9999999888764 589999999999963 23567889999999985
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9.7e-21 Score=225.41 Aligned_cols=295 Identities=9% Similarity=0.012 Sum_probs=195.5
Q ss_pred hHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCcee
Q 002194 101 EIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (954)
Q Consensus 101 ~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~ 180 (954)
.++.+... ++..++|||||++|||++.. + +.+.||.+.+ ++.+
T Consensus 15 ~~~~~~~~-~~~~~~~~~DG~~la~~s~~----------------------~----------g~~~lw~~~~----g~~~ 57 (582)
T 3o4h_A 15 DVERLIAV-EKYSLQGVVDGDKLLVVGFS----------------------E----------GSVNAYLYDG----GETV 57 (582)
T ss_dssp HHHHHHHS-CEEEEEEEETTTEEEEEEEE----------------------T----------TEEEEEEEET----TEEE
T ss_pred HHHHHhcc-chheeecCCCCCeEEEEEcc----------------------C----------CceeEEEEcC----CCcE
Confidence 34455555 57889999999999998862 1 2455666633 6777
Q ss_pred eeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEEC--CCCceeecccCCCccccccccceeEecCCeEE
Q 002194 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV--DTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (954)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~--~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l 258 (954)
+++... ...+..|+|||| +|+|+... ..++...+||++++ +++.. +++.... ....+|+|||+.+
T Consensus 58 ~lt~~~-~~~~~~~~~spd--~~l~~~~~---~~g~~~~~l~~~~~~~~g~~~-~l~~~~~------~~~~~~s~dg~~~ 124 (582)
T 3o4h_A 58 KLNREP-INSVLDPHYGVG--RVILVRDV---SKGAEQHALFKVNTSRPGEEQ-RLEAVKP------MRILSGVDTGEAV 124 (582)
T ss_dssp ECCSSC-CSEECEECTTCS--EEEEEEEC---STTSCCEEEEEEETTSTTCCE-ECTTSCS------BEEEEEEECSSCE
T ss_pred eeeccc-ccccccccCCCC--eEEEEecc---CCCCcceEEEEEeccCCCccc-cccCCCC------ceeeeeCCCCCeE
Confidence 776532 136889999999 68887752 12345679999998 65544 6765544 3367899999887
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCcccccc
Q 002194 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSL 337 (954)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~~~~~~ 337 (954)
+++.. ....++++++ +|+.++++.... .++
T Consensus 125 ~~~s~------------------------------------------------~~~~~~l~d~~~g~~~~l~~~~~-~~~ 155 (582)
T 3o4h_A 125 VFTGA------------------------------------------------TEDRVALYALDGGGLRELARLPG-FGF 155 (582)
T ss_dssp EEEEE------------------------------------------------CSSCEEEEEEETTEEEEEEEESS-CEE
T ss_pred EEEec------------------------------------------------CCCCceEEEccCCcEEEeecCCC-ceE
Confidence 76621 0112335588 888887776532 789
Q ss_pred ccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEE
Q 002194 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (954)
Q Consensus 338 ~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~ 417 (954)
+|||||++|++.+.+.... ..|++||+++++.+.++.... ....++|||||+.|+..
T Consensus 156 ~~spDG~~la~~~~~~~~~---------~~i~~~d~~~g~~~~l~~~~~-------------~~~~~~~SpDG~~l~~~- 212 (582)
T 3o4h_A 156 VSDIRGDLIAGLGFFGGGR---------VSLFTSNLSSGGLRVFDSGEG-------------SFSSASISPGMKVTAGL- 212 (582)
T ss_dssp EEEEETTEEEEEEEEETTE---------EEEEEEETTTCCCEEECCSSC-------------EEEEEEECTTSCEEEEE-
T ss_pred EECCCCCEEEEEEEcCCCC---------eEEEEEcCCCCCceEeecCCC-------------ccccceECCCCCEEEEc-
Confidence 9999999999988653211 279999999888888776432 23578999999988722
Q ss_pred EeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCcee--------eccCCceEEEEEeccccceEEEEEcCC
Q 002194 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGIS--------WCDDSLALVYESWYKTRRTRTWVISPG 489 (954)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~--------~spDg~~l~~~~~~~~~~~~l~~~d~~ 489 (954)
.. +....|+++++ ++++.+.++..+..+..++ ||||| .+++....++ ..+||.+
T Consensus 213 -~~---------~~~~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g-~~~l~~~--- 274 (582)
T 3o4h_A 213 -ET---------AREARLVTVDP---RDGSVEDLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREG-RSAVFID--- 274 (582)
T ss_dssp -EC---------SSCEEEEEECT---TTCCEEECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETT-EEEEEET---
T ss_pred -cC---------CCeeEEEEEcC---CCCcEEEccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCC-cEEEEEE---
Confidence 11 22347999996 6677665555666667778 99999 7777766554 3677776
Q ss_pred CCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEE
Q 002194 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (954)
Q Consensus 490 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 567 (954)
+ +... .....+.+ ++|| ||++++..... ...+.||++|+++ +.++|
T Consensus 275 -g--~~~~---~~~~~v~~------~~~s-dg~~l~~~s~~------------------~~p~~l~~~d~~~-~~~~l 320 (582)
T 3o4h_A 275 -G--ERVE---APQGNHGR------VVLW-RGKLVTSHTSL------------------STPPRIVSLPSGE-PLLEG 320 (582)
T ss_dssp -T--EEEC---CCSSEEEE------EEEE-TTEEEEEEEET------------------TEEEEEEEETTCC-EEECC
T ss_pred -C--Ceec---cCCCceEE------EEec-CCEEEEEEcCC------------------CCCCeEEEEcCCC-ceEEE
Confidence 2 1111 11122222 7789 88877554421 1235689999876 55555
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-21 Score=205.08 Aligned_cols=232 Identities=16% Similarity=0.125 Sum_probs=171.5
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
..+.++++. +|.++.++++.|+ +.|+||++||++.. ... ...++..|+++||.|+.
T Consensus 5 ~~~~~~~~~-~g~~l~~~~~~p~--------~~p~vv~~HG~~~~-----------~~~----~~~~~~~l~~~g~~v~~ 60 (290)
T 3ksr_A 5 KLSSIEIPV-GQDELSGTLLTPT--------GMPGVLFVHGWGGS-----------QHH----SLVRAREAVGLGCICMT 60 (290)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEEE--------SEEEEEEECCTTCC-----------TTT----THHHHHHHHTTTCEEEC
T ss_pred ceeeEEecC-CCeEEEEEEecCC--------CCcEEEEeCCCCCC-----------cCc----HHHHHHHHHHCCCEEEE
Confidence 456777876 7899999999986 27999999997421 111 22456778889999999
Q ss_pred cCCCCCCCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 718 GPTTPIIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
.+..|+|.+.... ......++|+.++++++.+++.+|+++|+|+|||+||.+++.++.++| ++++++++|...
T Consensus 61 ---~d~~G~g~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~ 135 (290)
T 3ksr_A 61 ---FDLRGHEGYASMRQSVTRAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALY 135 (290)
T ss_dssp ---CCCTTSGGGGGGTTTCBHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCC
T ss_pred ---eecCCCCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchh
Confidence 5666777765432 245677899999999999988888899999999999999999999987 788888888654
Q ss_pred CCCCCCCCcccc-------chhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002194 796 RTLTPFGFQNED-------RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (954)
Q Consensus 796 ~~~~~~~~~~~~-------~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (954)
... .|...... ...+.....+...++...+.++++|+|++||+.|..++ ..++.++++.++..+ +++++
T Consensus 136 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~--~~~~~~~~~~~~~~~-~~~~~ 211 (290)
T 3ksr_A 136 KDA-HWDQPKVSLNADPDLMDYRRRALAPGDNLALAACAQYKGDVLLVEAENDVIVP--HPVMRNYADAFTNAR-SLTSR 211 (290)
T ss_dssp CSS-CTTSBHHHHHHSTTHHHHTTSCCCGGGCHHHHHHHHCCSEEEEEEETTCSSSC--HHHHHHHHHHTTTSS-EEEEE
T ss_pred hhh-hhhcccccccCChhhhhhhhhhhhhccccHHHHHHhcCCCeEEEEecCCcccC--hHHHHHHHHHhccCC-CceEE
Confidence 221 11111000 00001111111222334556788999999999999998 999999999987765 78999
Q ss_pred EeCCCCCcCCCcccHHHHHHHHHHHHHHhcccCC
Q 002194 869 ILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 869 ~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
++++++|.+........+.+.+.+||++++....
T Consensus 212 ~~~~~gH~~~~~~~~~~~~~~i~~fl~~~~~~~~ 245 (290)
T 3ksr_A 212 VIAGADHALSVKEHQQEYTRALIDWLTEMVVGRR 245 (290)
T ss_dssp EETTCCTTCCSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred EcCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999986666677888999999999986543
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=214.10 Aligned_cols=221 Identities=19% Similarity=0.200 Sum_probs=157.6
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcc
Q 002194 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (954)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~ 730 (954)
.+.+++|.|++ .++.|+||++||+... .....+..|+++||.|+++++++ +|.+.
T Consensus 144 ~l~~~l~~P~~-----~~~~P~Vv~~hG~~~~-----------------~~~~~a~~La~~Gy~V~a~D~rG---~g~~~ 198 (422)
T 3k2i_A 144 RVRATLFLPPG-----PGPFPGIIDIFGIGGG-----------------LLEYRASLLAGHGFATLALAYYN---FEDLP 198 (422)
T ss_dssp TEEEEEEECSS-----SCCBCEEEEECCTTCS-----------------CCCHHHHHHHTTTCEEEEEECSS---STTSC
T ss_pred cEEEEEEcCCC-----CCCcCEEEEEcCCCcc-----------------hhHHHHHHHHhCCCEEEEEccCC---CCCCC
Confidence 58999999975 3458999999996311 01134778899999999966654 44332
Q ss_pred cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccc----
Q 002194 731 ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE---- 806 (954)
Q Consensus 731 ~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~---- 806 (954)
.. .....++|+.+++++|.++..+|+++|+|+||||||.+|+.++.++|+ ++++|+++|........+.+...
T Consensus 199 ~~--~~~~~~~d~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~ 275 (422)
T 3k2i_A 199 NN--MDNISLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYKHSSIPP 275 (422)
T ss_dssp SS--CSCEETHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEETTEEECC
T ss_pred CC--cccCCHHHHHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhcCCcCCC
Confidence 21 111236788999999999988899999999999999999999999987 99999998875322211111000
Q ss_pred -----------------cchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHH-HHHHHHHHhCCCc-EEE
Q 002194 807 -----------------DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS-DRFFNALKGHGAL-CRL 867 (954)
Q Consensus 807 -----------------~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~-~~~~~~l~~~g~~-~~~ 867 (954)
....+.........+....+.++++|+|++||++|.++| .... +.+.++|+..+++ +++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp--~~~~~~~~~~~l~~~g~~~~~l 353 (422)
T 3k2i_A 276 LGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVGQDDHNWR--SELYAQTVSERLQAHGKEKPQI 353 (422)
T ss_dssp CCBCGGGCEECTTSCEECTTCBCCCTTGGGSTTBCCGGGCCSCEEEEEETTCSSSC--HHHHHHHHHHHHHHTTCCCCEE
T ss_pred cccchhhcccCcchhHHHHHHHhhhhhcccccccccHHHCCCCEEEEEeCCCCCCC--HHHHHHHHHHHHHhcCCCCCEE
Confidence 000011111111223334567889999999999999998 7755 6899999999988 999
Q ss_pred EEeCCCCCcCCC---------------------------cccHHHHHHHHHHHHHHhcccC
Q 002194 868 VILPFESHGYAA---------------------------RESIMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 868 ~~~~~~~H~~~~---------------------------~~~~~~~~~~i~~fl~~~l~~~ 901 (954)
++||+++|.+.. .+..++.++.+++||+++|...
T Consensus 354 ~~~~gagH~~~~p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L~~~ 414 (422)
T 3k2i_A 354 ICYPGTGHYIEPPYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHLGGT 414 (422)
T ss_dssp EEETTCCSCCCSTTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEECCCCCEECCCCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999732 1446778999999999999754
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=210.45 Aligned_cols=226 Identities=17% Similarity=0.219 Sum_probs=166.7
Q ss_pred ceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 638 QKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 638 ~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
..+.++|.+. +|..+.+++|+|+++++.+ ++|+||++||++........+.... ..+..+ .........|+.|+
T Consensus 143 ~~~~~~~~~~~dg~~l~~~v~~P~~~~~~~--~~Pvvv~lHG~g~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~vv 217 (380)
T 3doh_A 143 DFLAFTFKDPETGVEIPYRLFVPKDVNPDR--KYPLVVFLHGAGERGTDNYLQVAGN-RGAVVW--AQPRYQVVHPCFVL 217 (380)
T ss_dssp GEEEEEEECTTTCCEEEEEEECCSSCCTTS--CEEEEEEECCGGGCSSSSSHHHHSS-TTTTGG--GSHHHHTTSCCEEE
T ss_pred cccceeeccCCCCcEEEEEEEcCCCCCCCC--CccEEEEECCCCCCCCchhhhhhcc-ccceee--cCccccccCCEEEE
Confidence 3577889988 9999999999999876544 4999999999854322211111100 001111 11223456889999
Q ss_pred EcCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 717 GGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
.+++++..++|..+.. .......+.|+.++++++.++..+|++||+|+||||||++++.++.++|++|+++|+++|.
T Consensus 218 ~pd~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~ 297 (380)
T 3doh_A 218 APQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGG 297 (380)
T ss_dssp EECCCTTCCSBTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCC
T ss_pred EecCCCCCcccccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCC
Confidence 9888766666554321 1122456788999999999987799999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCC-CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC
Q 002194 794 YNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (954)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 872 (954)
.+ + ..+.++. +|+|++||+.|..+| ++++++++++|+..|.++++++||+
T Consensus 298 ~~--------------------------~-~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~~~l~~~g~~~~~~~~~~ 348 (380)
T 3doh_A 298 GD--------------------------V-SKVERIKDIPIWVFHAEDDPVVP--VENSRVLVKKLAEIGGKVRYTEYEK 348 (380)
T ss_dssp CC--------------------------G-GGGGGGTTSCEEEEEETTCSSSC--THHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CC--------------------------h-hhhhhccCCCEEEEecCCCCccC--HHHHHHHHHHHHHCCCceEEEEecC
Confidence 41 1 1122333 899999999999999 9999999999999999999999999
Q ss_pred C---CCcCCCcccHHHHHH--HHHHHHHHh
Q 002194 873 E---SHGYAARESIMHVLW--ETDRWLQKY 897 (954)
Q Consensus 873 ~---~H~~~~~~~~~~~~~--~i~~fl~~~ 897 (954)
+ +|++.........+. .+++||.++
T Consensus 349 ~~h~~h~~~~H~~~~~~~~~~~i~~wL~~~ 378 (380)
T 3doh_A 349 GFMEKHGWDPHGSWIPTYENQEAIEWLFEQ 378 (380)
T ss_dssp THHHHTTCCTTCTHHHHHTCHHHHHHHHTC
T ss_pred CcccCCCCCCchhHHHhcCCHHHHHHHHhh
Confidence 8 444433334455556 889999875
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-20 Score=203.19 Aligned_cols=233 Identities=15% Similarity=0.152 Sum_probs=165.4
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAI 715 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V 715 (954)
+..+.+++++.+| .|.+++|.|++. +.|+||++|||++..+. ...+ ......|++ .||.|
T Consensus 61 ~~~~~~~~~~~~g-~i~~~~~~p~~~------~~p~vv~~HGgg~~~g~--------~~~~----~~~~~~la~~~g~~V 121 (326)
T 3ga7_A 61 MTTRTCAVPTPYG-DVTTRLYSPQPT------SQATLYYLHGGGFILGN--------LDTH----DRIMRLLARYTGCTV 121 (326)
T ss_dssp CEEEEEEECCTTS-CEEEEEEESSSS------CSCEEEEECCSTTTSCC--------TTTT----HHHHHHHHHHHCSEE
T ss_pred cceEEEEeecCCC-CeEEEEEeCCCC------CCcEEEEECCCCcccCC--------hhhh----HHHHHHHHHHcCCEE
Confidence 4458899999898 899999999741 24999999998644322 1122 235666777 79999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhCCCc------ccE
Q 002194 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPHL------FCC 786 (954)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~~------~~a 786 (954)
+..+++...++ .+...++|+.++++|+.++. .+|++||+|+|+|+||++|+.++.+.++. +++
T Consensus 122 ~~~dyr~~p~~--------~~~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~ 193 (326)
T 3ga7_A 122 IGIDYSLSPQA--------RYPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIA 193 (326)
T ss_dssp EEECCCCTTTS--------CTTHHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEE
T ss_pred EEeeCCCCCCC--------CCCcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceE
Confidence 99777644332 23456799999999999873 57999999999999999999999887654 899
Q ss_pred EEEeccCCCCCCCCCC--Ccccc-chhhhcHHH----H-----HhcCccc-----ccCCCCCCEEEEEeCCCCCCCCchH
Q 002194 787 GIARSGAYNRTLTPFG--FQNED-RTLWEATST----Y-----VEMSPFM-----SANKLKKPILLVHGEEDNNSGTLTM 849 (954)
Q Consensus 787 ~v~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~----~-----~~~sp~~-----~~~~~~~P~Lii~G~~D~~v~~~~~ 849 (954)
+|+.+|+++....... +.... ......... | ...+|.. .+.+...|+||+||+.|.++ .
T Consensus 194 ~vl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~~----~ 269 (326)
T 3ga7_A 194 ILLWYGLYGLQDSVSRRLFGGAWDGLTREDLDMYEKAYLRNDEDRESPWYCLFNNDLTRDVPPCFIASAEFDPLI----D 269 (326)
T ss_dssp EEEESCCCSCSCCHHHHHCCCTTTTCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCSSCCCCEEEEEETTCTTH----H
T ss_pred EEEeccccccCCChhHhhhcCCCCCCCHHHHHHHHHHhCCCCCccCCcccCCCcchhhcCCCCEEEEecCcCcCH----H
Confidence 9999998764321100 00000 000000000 1 1112221 22335569999999999874 5
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCCcCCCc----ccHHHHHHHHHHHHHHhccc
Q 002194 850 QSDRFFNALKGHGALCRLVILPFESHGYAAR----ESIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 850 ~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~fl~~~l~~ 900 (954)
++.+++++|+..|+++++++||+++|++... +...++++.+.+||.+++..
T Consensus 270 ~~~~~~~~l~~~g~~~~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l~~ 324 (326)
T 3ga7_A 270 DSRLLHQTLQAHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARMKT 324 (326)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCcEEEEEeCCCccchhhhcCccHHHHHHHHHHHHHHHHHhcc
Confidence 8899999999999999999999999998432 34578889999999999853
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=216.00 Aligned_cols=221 Identities=14% Similarity=0.194 Sum_probs=155.5
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcc
Q 002194 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (954)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~ 730 (954)
.+.+++|+|++ .++.|+||++||+... .....+..|+++||.|+++++++..+.....
T Consensus 160 ~l~~~l~~P~~-----~~~~P~Vv~lhG~~~~-----------------~~~~~a~~La~~Gy~Vla~D~rG~~~~~~~~ 217 (446)
T 3hlk_A 160 RVRGTLFLPPE-----PGPFPGIVDMFGTGGG-----------------LLEYRASLLAGKGFAVMALAYYNYEDLPKTM 217 (446)
T ss_dssp TEEEEEEECSS-----SCCBCEEEEECCSSCS-----------------CCCHHHHHHHTTTCEEEEECCSSSTTSCSCC
T ss_pred eEEEEEEeCCC-----CCCCCEEEEECCCCcc-----------------hhhHHHHHHHhCCCEEEEeccCCCCCCCcch
Confidence 58999999975 3458999999996311 0113477889999999996666543322211
Q ss_pred cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccc----
Q 002194 731 ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE---- 806 (954)
Q Consensus 731 ~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~---- 806 (954)
.. ..++|+.+++++|.++..+|+++|+|+||||||.+|+.++.++|+ ++++|+++|........+.+...
T Consensus 218 ~~-----~~~~d~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~ 291 (446)
T 3hlk_A 218 ET-----LHLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPP 291 (446)
T ss_dssp SE-----EEHHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECC
T ss_pred hh-----CCHHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCc
Confidence 11 237888999999999988999999999999999999999999987 99999998865322111100000
Q ss_pred -----------------cchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHH-HHHHHHHHHhCCCc-EEE
Q 002194 807 -----------------DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQ-SDRFFNALKGHGAL-CRL 867 (954)
Q Consensus 807 -----------------~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~-~~~~~~~l~~~g~~-~~~ 867 (954)
....+..............+.++++|+|++||++|.++| ..+ +.+++++|+..|++ +++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp--~~~~~~~~~~~l~~~g~~~~~l 369 (446)
T 3hlk_A 292 VGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWK--SEFYANEACKRLQAHGRRKPQI 369 (446)
T ss_dssp CCBCGGGCEECSSSCEECTTCBCCTTSGGGGGGBCCGGGCCSEEEEEEETTCCSSC--HHHHHHHHHHHHHHTTCCCCEE
T ss_pred cccchhccccccchHHHHHHHHhchhhccccccccCHHHCCCCEEEEEeCCCCCcC--hHHHHHHHHHHHHHcCCCCcEE
Confidence 000011111011112223467788999999999999998 745 47899999999988 899
Q ss_pred EEeCCCCCcCC---------------------------CcccHHHHHHHHHHHHHHhcccC
Q 002194 868 VILPFESHGYA---------------------------ARESIMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 868 ~~~~~~~H~~~---------------------------~~~~~~~~~~~i~~fl~~~l~~~ 901 (954)
++||+++|.+. ..++..+.++.+++||+++|...
T Consensus 370 ~~~pgagH~~~~p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L~~~ 430 (446)
T 3hlk_A 370 ICYPETGHYIEPPYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHLGGH 430 (446)
T ss_dssp EEETTBCSCCCSTTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEECCCCCeECCCCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999983 12235678899999999999653
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=205.98 Aligned_cols=221 Identities=16% Similarity=0.061 Sum_probs=155.2
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCCCCCCCCc
Q 002194 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDE 729 (954)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~ 729 (954)
.+++++|.|++ .++.|+||++|||.+..+.. .. ...+...|+. .||.|+.++++...++
T Consensus 66 ~i~~~~~~p~~-----~~~~p~vv~~HGGg~~~g~~--------~~----~~~~~~~la~~~g~~vv~~dyr~~p~~--- 125 (322)
T 3fak_A 66 GCAAEWVRAPG-----CQAGKAILYLHGGGYVMGSI--------NT----HRSMVGEISRASQAAALLLDYRLAPEH--- 125 (322)
T ss_dssp TEEEEEEECTT-----CCTTCEEEEECCSTTTSCCH--------HH----HHHHHHHHHHHHTSEEEEECCCCTTTS---
T ss_pred CeEEEEEeCCC-----CCCccEEEEEcCCccccCCh--------HH----HHHHHHHHHHhcCCEEEEEeCCCCCCC---
Confidence 38899999975 23589999999986432211 11 1134455665 6999999777643322
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc----ccEEEEeccCCCCCCCCCCCc-
Q 002194 730 EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL----FCCGIARSGAYNRTLTPFGFQ- 804 (954)
Q Consensus 730 ~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~~~~~~~~~~~~~~- 804 (954)
.++..++|+.++++|+.++ .+|++||+|+|+|+||++|+.++.+.++. ++++|+++|+++.......+.
T Consensus 126 -----~~~~~~~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~ 199 (322)
T 3fak_A 126 -----PFPAAVEDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFKT 199 (322)
T ss_dssp -----CTTHHHHHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTHHHH
T ss_pred -----CCCcHHHHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCCcCHHH
Confidence 2356779999999999998 67999999999999999999999886554 999999999987543211110
Q ss_pred --------cccchhhhcHHHH--------HhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002194 805 --------NEDRTLWEATSTY--------VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (954)
Q Consensus 805 --------~~~~~~~~~~~~~--------~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (954)
......|- ...| ...+|+....+...|+||+||+.|.+ ..++.+++++|+..|++++++
T Consensus 200 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~~----~~~~~~~~~~l~~~g~~~~~~ 274 (322)
T 3fak_A 200 RAEADPMVAPGGINKM-AARYLNGADAKHPYASPNFANLKGLPPLLIHVGRDEVL----LDDSIKLDAKAKADGVKSTLE 274 (322)
T ss_dssp TTTTCCSCCSSHHHHH-HHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEETTSTT----HHHHHHHHHHHHHTTCCEEEE
T ss_pred hCccCcccCHHHHHHH-HHHhcCCCCCCCcccCCCcccccCCChHhEEEcCcCcc----HHHHHHHHHHHHHcCCCEEEE
Confidence 00000000 0111 12244432222235999999999976 578899999999999999999
Q ss_pred EeCCCCCcCCC----cccHHHHHHHHHHHHHHhcccCC
Q 002194 869 ILPFESHGYAA----RESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 869 ~~~~~~H~~~~----~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
+||+++|.+.. .+...++++.+.+||++++....
T Consensus 275 ~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~~ 312 (322)
T 3fak_A 275 IWDDMIHVWHAFHPMLPEGKQAIVRVGEFMREQWAALA 312 (322)
T ss_dssp EETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC--
T ss_pred EeCCceeehhhccCCCHHHHHHHHHHHHHHHHHHhcch
Confidence 99999998743 33467888999999999987543
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=196.21 Aligned_cols=207 Identities=15% Similarity=0.094 Sum_probs=157.4
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (954)
+.+++++.+|.++.++++.|++ ++.|+||++||+... .......+..|+++||.|+.++
T Consensus 4 ~~~~~~~~~g~~l~~~~~~p~~------~~~p~vv~~hG~~~~---------------~~~~~~~~~~l~~~g~~v~~~d 62 (236)
T 1zi8_A 4 EGISIQSYDGHTFGALVGSPAK------APAPVIVIAQDIFGV---------------NAFMRETVSWLVDQGYAAVCPD 62 (236)
T ss_dssp TTCCEECTTSCEECEEEECCSS------CSEEEEEEECCTTBS---------------CHHHHHHHHHHHHTTCEEEEEC
T ss_pred ceEEEecCCCCeEEEEEECCCC------CCCCEEEEEcCCCCC---------------CHHHHHHHHHHHhCCcEEEecc
Confidence 3466788899999999999863 248999999996311 0111245667888999999954
Q ss_pred CCCCCCCCCccc-----------------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 002194 720 TTPIIGEGDEEA-----------------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (954)
Q Consensus 720 ~~~~~G~G~~~~-----------------~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 782 (954)
. .|+|.+.. .........+|+.++++++.++..++ ++++++|||+||.+++.++.++|
T Consensus 63 ~---~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~- 137 (236)
T 1zi8_A 63 L---YARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY- 137 (236)
T ss_dssp G---GGGTSTTCBCCTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC-
T ss_pred c---cccCCCcccccccchhhhhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC-
Confidence 4 44444321 11223456889999999998876544 69999999999999999999997
Q ss_pred cccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC
Q 002194 783 LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862 (954)
Q Consensus 783 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g 862 (954)
++++++.+|... .++...+.++++|+|++||++|..+| .+.++++++.++..+
T Consensus 138 -~~~~v~~~~~~~------------------------~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~~~ 190 (236)
T 1zi8_A 138 -VDRAVGYYGVGL------------------------EKQLNKVPEVKHPALFHMGGQDHFVP--APSRQLITEGFGANP 190 (236)
T ss_dssp -SSEEEEESCSSG------------------------GGCGGGGGGCCSCEEEEEETTCTTSC--HHHHHHHHHHHTTCT
T ss_pred -ccEEEEecCccc------------------------ccchhhhhhcCCCEEEEecCCCCCCC--HHHHHHHHHHHHhCC
Confidence 999998887421 01234556778999999999999998 999999999997765
Q ss_pred CcEEEEEeCCCCCcCCCcc-------cHHHHHHHHHHHHHHhccc
Q 002194 863 ALCRLVILPFESHGYAARE-------SIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 863 ~~~~~~~~~~~~H~~~~~~-------~~~~~~~~i~~fl~~~l~~ 900 (954)
+++++++++++|.+.... ..+.+++.+.+||+++++.
T Consensus 191 -~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 234 (236)
T 1zi8_A 191 -LLQVHWYEEAGHSFARTGSSGYVASAAALANERTLDFLVPLQSR 234 (236)
T ss_dssp -TEEEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGGGCC-
T ss_pred -CceEEEECCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhcCC
Confidence 799999999999875432 2457888999999998754
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=208.01 Aligned_cols=230 Identities=13% Similarity=0.105 Sum_probs=165.8
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcE
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (954)
.....+.+++.+.+|.+|+++++.|++ .++.|+||++||++.... .|. ....++++||.
T Consensus 78 ~~~~~~~~~~~~~~g~~l~~~~~~P~~-----~~~~p~vv~~HG~g~~~~-----------~~~-----~~~~~~~~G~~ 136 (346)
T 3fcy_A 78 SFAECYDLYFTGVRGARIHAKYIKPKT-----EGKHPALIRFHGYSSNSG-----------DWN-----DKLNYVAAGFT 136 (346)
T ss_dssp TTEEEEEEEEECGGGCEEEEEEEEESC-----SSCEEEEEEECCTTCCSC-----------CSG-----GGHHHHTTTCE
T ss_pred CceEEEEEEEEcCCCCEEEEEEEecCC-----CCCcCEEEEECCCCCCCC-----------Chh-----hhhHHHhCCcE
Confidence 345678899999999999999999975 235899999999753211 111 12367899999
Q ss_pred EEEcCCCCCCCCCCc-------------------ccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH
Q 002194 715 ILGGPTTPIIGEGDE-------------------EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (954)
Q Consensus 715 V~~~~~~~~~G~G~~-------------------~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 775 (954)
|+++++++..+.+.. .....++...+.|+.++++++..+..+|+++|+++|+|+||.+++.
T Consensus 137 v~~~D~rG~g~s~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~ 216 (346)
T 3fcy_A 137 VVAMDVRGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLA 216 (346)
T ss_dssp EEEECCTTSSSSCCCCCCCSSCCSBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHH
T ss_pred EEEEcCCCCCCCCCCCcccCCCCcCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHH
Confidence 999655543322211 1122345677899999999999988889999999999999999999
Q ss_pred HHHhCCCcccEEEEeccCCCCCCCCCCCc--ccc---------------chhhhcHHHHHhcCcccccCCCCCCEEEEEe
Q 002194 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQ--NED---------------RTLWEATSTYVEMSPFMSANKLKKPILLVHG 838 (954)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G 838 (954)
+++++|+ ++++|+++|+.......+... ... .........+...++...+.++++|+|+++|
T Consensus 217 ~a~~~p~-v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~P~lii~G 295 (346)
T 3fcy_A 217 CAALEPR-VRKVVSEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGDVLMCVG 295 (346)
T ss_dssp HHHHSTT-CCEEEEESCSSCCHHHHHHTTCCCGGGHHHHHHHHHHCTTCTTHHHHHHHHGGGCHHHHGGGCCSEEEEEEE
T ss_pred HHHhCcc-ccEEEECCCcccCHHHHhhccccccchHHHHHHHHhcCCCcchHHHHHHHhCcccHHHHHHhcCCCEEEEee
Confidence 9999987 999999998754210000000 000 0000111223334556677889999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
+.|.++| +..+.++++++.. +++++++|+++|.+. ..+.+.+.+||++
T Consensus 296 ~~D~~~~--~~~~~~~~~~~~~---~~~~~~~~~~gH~~~-----~~~~~~i~~fl~~ 343 (346)
T 3fcy_A 296 LMDQVCP--PSTVFAAYNNIQS---KKDIKVYPDYGHEPM-----RGFGDLAMQFMLE 343 (346)
T ss_dssp TTCSSSC--HHHHHHHHTTCCS---SEEEEEETTCCSSCC-----TTHHHHHHHHHHT
T ss_pred CCCCcCC--HHHHHHHHHhcCC---CcEEEEeCCCCCcCH-----HHHHHHHHHHHHH
Confidence 9999998 8888888876643 689999999999985 3557788999976
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-21 Score=204.43 Aligned_cols=239 Identities=20% Similarity=0.189 Sum_probs=158.8
Q ss_pred ceEEEEEEc-CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 638 QKELIKYQR-KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 638 ~~~~~~~~~-~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
..+.+++.+ .+|.++.+.+|+|+++++.+ ++|+||++||+...... |.... .....+++.||+|+
T Consensus 16 ~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~--~~p~vv~lHG~~~~~~~-----------~~~~~-~~~~~~~~~g~~vv 81 (280)
T 3i6y_A 16 WHKQYSHVSNTLNCAMRFAIYLPPQASTGA--KVPVLYWLSGLTCSDEN-----------FMQKA-GAQRLAAELGIAIV 81 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGGTTC--CEEEEEEECCTTCCSSH-----------HHHHS-CCHHHHHHHTCEEE
T ss_pred cEEEEEEeccccCCeeEEEEEeCCCCCCCC--CccEEEEecCCCCChhH-----------Hhhcc-cHHHHHhhCCeEEE
Confidence 345666655 47899999999999875433 59999999997432111 10000 12345667899999
Q ss_pred EcCCCCCC-----------CCCCcccc----------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH
Q 002194 717 GGPTTPII-----------GEGDEEAN----------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (954)
Q Consensus 717 ~~~~~~~~-----------G~G~~~~~----------~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 775 (954)
.++.++.. |.|.++.. ..+.....+|+ ++++.+...+ +++++|+|||+||++|+.
T Consensus 82 ~pd~~~~g~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~i~l~G~S~GG~~a~~ 157 (280)
T 3i6y_A 82 APDTSPRGEGVADDEGYDLGQGAGFYVNATQAPWNRHYQMYDYVVNEL---PELIESMFPV-SDKRAIAGHSMGGHGALT 157 (280)
T ss_dssp EECSSCCSTTCCCCSSTTSSTTCCTTCBCCSTTGGGTCBHHHHHHTHH---HHHHHHHSSE-EEEEEEEEETHHHHHHHH
T ss_pred EeCCcccccccCcccccccccCccccccccCCCccchhhHHHHHHHHH---HHHHHHhCCC-CCCeEEEEECHHHHHHHH
Confidence 96643110 11221110 01122233343 4445444434 679999999999999999
Q ss_pred HHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCC--CCEEEEEeCCCCCCCCchHH-HH
Q 002194 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLK--KPILLVHGEEDNNSGTLTMQ-SD 852 (954)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~--~P~Lii~G~~D~~v~~~~~~-~~ 852 (954)
++.++|++|+++|+++|.++....++...............+...+|...+.+++ +|+||+||+.|.+++ ... ++
T Consensus 158 ~a~~~p~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~--~~~~~~ 235 (280)
T 3i6y_A 158 IALRNPERYQSVSAFSPINNPVNCPWGQKAFTAYLGKDTDTWREYDASLLMRAAKQYVPALVDQGEADNFLA--EQLKPE 235 (280)
T ss_dssp HHHHCTTTCSCEEEESCCCCGGGSHHHHHHHHHHHCSCGGGTGGGCHHHHHHHCSSCCCEEEEEETTCTTHH--HHTCHH
T ss_pred HHHhCCccccEEEEeCCccccccCchHHHHHHHhcCCchHHHHhcCHHHHHHhcCCCccEEEEEeCCCcccc--chhhHH
Confidence 9999999999999999987643221110000000111223344566666666665 799999999999986 544 89
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 853 RFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
+++++|+..|+++++++||+++|.+. .....+.++++|+.++|+
T Consensus 236 ~~~~~l~~~g~~~~~~~~~g~~H~~~---~~~~~~~~~l~~~~~~l~ 279 (280)
T 3i6y_A 236 VLEAAASSNNYPLELRSHEGYDHSYY---FIASFIEDHLRFHSNYLN 279 (280)
T ss_dssp HHHHHHHHTTCCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCceEEEeCCCCccHH---HHHHhHHHHHHHHHhhcc
Confidence 99999999999999999999999863 234567888999999874
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=203.16 Aligned_cols=230 Identities=15% Similarity=0.135 Sum_probs=165.0
Q ss_pred CCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEE
Q 002194 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (954)
Q Consensus 636 ~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (954)
....+.+++++.+|..+.++++.|++ .++.|+||++||+.... .........++++||.|
T Consensus 53 ~~~~~~~~~~~~~g~~i~~~~~~P~~-----~~~~p~vv~~HG~~~~~---------------~~~~~~~~~l~~~g~~v 112 (318)
T 1l7a_A 53 GVKVYRLTYKSFGNARITGWYAVPDK-----EGPHPAIVKYHGYNASY---------------DGEIHEMVNWALHGYAT 112 (318)
T ss_dssp SEEEEEEEEEEGGGEEEEEEEEEESS-----CSCEEEEEEECCTTCCS---------------GGGHHHHHHHHHTTCEE
T ss_pred CeEEEEEEEEccCCCEEEEEEEeeCC-----CCCccEEEEEcCCCCCC---------------CCCcccccchhhCCcEE
Confidence 34578889998899999999999975 23589999999974210 00112334778899999
Q ss_pred EEcCCCCCCCCCCcccc--------------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH
Q 002194 716 LGGPTTPIIGEGDEEAN--------------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (954)
Q Consensus 716 ~~~~~~~~~G~G~~~~~--------------------~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 775 (954)
+.++++ |+|.+... ..++...+.|+.+++++|.++..+|+++|+++|||+||.+++.
T Consensus 113 ~~~d~r---g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 189 (318)
T 1l7a_A 113 FGMLVR---GQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIA 189 (318)
T ss_dssp EEECCT---TTSSSCCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHH
T ss_pred EEecCC---CCCCCCCcccccCCccccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHH
Confidence 996554 44443221 1124678999999999999998888899999999999999999
Q ss_pred HHHhCCCcccEEEEeccCCCCCC------CCCCCccccch------hhhc---HHHHHhcCcccccCCCCCCEEEEEeCC
Q 002194 776 LLAHAPHLFCCGIARSGAYNRTL------TPFGFQNEDRT------LWEA---TSTYVEMSPFMSANKLKKPILLVHGEE 840 (954)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~------~~~~~~~~~~~------~~~~---~~~~~~~sp~~~~~~~~~P~Lii~G~~ 840 (954)
++.++|+ ++++|+.+|...... ....+...... .... .......++...+.++++|+|++||++
T Consensus 190 ~a~~~~~-~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~g~~ 268 (318)
T 1l7a_A 190 AAALSDI-PKAAVADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLI 268 (318)
T ss_dssp HHHHCSC-CSEEEEESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETT
T ss_pred HhccCCC-ccEEEecCCcccCHHHHHhcCCcCccHHHHHHHhccCCcccHHHHHHhhccccHHHHHhhCCCCEEEEeccC
Confidence 9999976 788888887543100 00000000000 0000 111223456667788899999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
|..+| ++++.++++++.. +++++++++++|... .+..+.+.+||.++++
T Consensus 269 D~~~~--~~~~~~~~~~l~~---~~~~~~~~~~~H~~~-----~~~~~~~~~fl~~~l~ 317 (318)
T 1l7a_A 269 DKVTP--PSTVFAAYNHLET---KKELKVYRYFGHEYI-----PAFQTEKLAFFKQILK 317 (318)
T ss_dssp CSSSC--HHHHHHHHHHCCS---SEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHC
T ss_pred CCCCC--cccHHHHHhhcCC---CeeEEEccCCCCCCc-----chhHHHHHHHHHHHhC
Confidence 99998 8899888887754 489999999999842 4567889999999875
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-21 Score=205.45 Aligned_cols=239 Identities=17% Similarity=0.122 Sum_probs=165.7
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCC-CCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCc
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYD-PSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~-~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (954)
...+.+.+.+...+|..+...+| |+... ....++.|+||++|||++..+.. ......+..|+++||
T Consensus 15 ~~~~~~~v~~~~~~g~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~~~~------------~~~~~~~~~l~~~G~ 81 (283)
T 3bjr_A 15 LYFQGMQVIKQKLTATCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTHIPV------------AQAESLAMAFAGHGY 81 (283)
T ss_dssp --CCSSEEEEEECTTSSCEEEEE-EC--------CCEEEEEEECCSTTTCCCH------------HHHHHHHHHHHTTTC
T ss_pred cCCCCcceEEeecCCCceeEEEe-cCCccccccCCCCcEEEEECCCccccCCc------------cccHHHHHHHHhCCc
Confidence 33456678888889988888999 76421 00123589999999975322110 001235667888999
Q ss_pred EEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhCCCc-------
Q 002194 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPHL------- 783 (954)
Q Consensus 714 ~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~~------- 783 (954)
.|+.++++ |.|.+. ........|+.++++++.++. .+|+++|+|+||||||.+|+.++.++|++
T Consensus 82 ~v~~~d~~---g~~~~~---~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~ 155 (283)
T 3bjr_A 82 QAFYLEYT---LLTDQQ---PLGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNV 155 (283)
T ss_dssp EEEEEECC---CTTTCS---SCBTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTC
T ss_pred EEEEEecc---CCCccc---cCchhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCC
Confidence 99996654 444321 011345678889999998763 47788999999999999999999999877
Q ss_pred ------ccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHH
Q 002194 784 ------FCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (954)
Q Consensus 784 ------~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~ 857 (954)
++++|+.+|..+.... +.............+...++...+.++.+|+|++||++|..+| +.++.+++++
T Consensus 156 ~~~~~~~~~~v~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~p--~~~~~~~~~~ 230 (283)
T 3bjr_A 156 TPAMLKPNNVVLGYPVISPLLG---FPKDDATLATWTPTPNELAADQHVNSDNQPTFIWTTADDPIVP--ATNTLAYATA 230 (283)
T ss_dssp CHHHHCCSSEEEESCCCCTTSB---C--------CCCCCGGGGCGGGSCCTTCCCEEEEEESCCTTSC--THHHHHHHHH
T ss_pred CcCCCCccEEEEcCCccccccc---cccccchHHHHHHHhHhcCHHHhccCCCCCEEEEEcCCCCCCC--hHHHHHHHHH
Confidence 8999999998763211 1000000000001123456777778889999999999999998 9999999999
Q ss_pred HHhCCCcEEEEEeCCCCCcCCCcc------------cHHHHHHHHHHHHHHh
Q 002194 858 LKGHGALCRLVILPFESHGYAARE------------SIMHVLWETDRWLQKY 897 (954)
Q Consensus 858 l~~~g~~~~~~~~~~~~H~~~~~~------------~~~~~~~~i~~fl~~~ 897 (954)
++..+.+++++++++++|.+.... ....+.+.+.+||+++
T Consensus 231 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 282 (283)
T 3bjr_A 231 LATAKIPYELHVFKHGPHGLALANAQTAWKPDANQPHVAHWLTLALEWLADN 282 (283)
T ss_dssp HHHTTCCEEEEEECCCSHHHHHHHHHHSCC-------CCHHHHHHHHHHHHT
T ss_pred HHHCCCCeEEEEeCCCCcccccccccccccccccchhHHHHHHHHHHHHhhc
Confidence 999999999999999999764221 1246778888998764
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-21 Score=204.46 Aligned_cols=241 Identities=17% Similarity=0.182 Sum_probs=155.4
Q ss_pred eEEEEEE-cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 639 KELIKYQ-RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 639 ~~~~~~~-~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
.+.+++. ...|..+.+.+|+|++++. +++|+||++||+...... +... ......++++||+|+.
T Consensus 16 ~~~~~~~s~~~~~~~~~~v~~P~~~~~---~~~p~vv~lHG~~~~~~~-----------~~~~-~~~~~~~~~~g~~vv~ 80 (282)
T 3fcx_A 16 QKVFEHDSVELNCKMKFAVYLPPKAET---GKCPALYWLSGLTCTEQN-----------FISK-SGYHQSASEHGLVVIA 80 (282)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGGT---SCEEEEEEECCTTCCSHH-----------HHHH-SCCHHHHHHHTCEEEE
T ss_pred EEEEEEEchhcCCeeEEEEEcCCCCCC---CCCCEEEEEcCCCCCccc-----------hhhc-chHHHHhhcCCeEEEE
Confidence 3445555 3478899999999987543 359999999997532211 1000 0124567889999999
Q ss_pred cCC--CCCCCCC----------Ccc---cchhhHH---HHHHH-HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHH
Q 002194 718 GPT--TPIIGEG----------DEE---ANDRFVE---QLVAC-AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA 778 (954)
Q Consensus 718 ~~~--~~~~G~G----------~~~---~~~~~~~---~~~~D-~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~ 778 (954)
++. ++..+.| ... ....... ....+ +.++++++.+...+|++||+|+|+||||++|+.++.
T Consensus 81 ~d~~~rG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~ 160 (282)
T 3fcx_A 81 PDTSPRGCNIKGEDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICAL 160 (282)
T ss_dssp ECSCSSCCCC--------CCCCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHH
T ss_pred eccccCccccccccccccccCCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHH
Confidence 775 3332211 111 1111111 11222 234555555555588899999999999999999999
Q ss_pred hCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCC---CCCEEEEEeCCCCCCCCchHH--HHH
Q 002194 779 HAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL---KKPILLVHGEEDNNSGTLTMQ--SDR 853 (954)
Q Consensus 779 ~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~---~~P~Lii~G~~D~~v~~~~~~--~~~ 853 (954)
++|++|+++|+++|+++....++...............+...+|...+.++ .+|+|++||+.|.++| ..+ +++
T Consensus 161 ~~p~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~--~~~~~~~~ 238 (282)
T 3fcx_A 161 KNPGKYKSVSAFAPICNPVLCPWGKKAFSGYLGTDQSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLL--DGQLLPDN 238 (282)
T ss_dssp TSTTTSSCEEEESCCCCGGGSHHHHHHHHHHHC---CCGGGGCHHHHHTTCC---CCEEEEEETTCHHHH--TTSSCHHH
T ss_pred hCcccceEEEEeCCccCcccCchhHHHHHHhcCCchhhhhhcCHHHHHHhcccCCCcEEEEcCCCCcccc--cchhhHHH
Confidence 999999999999998763322111000000000111223344555444444 7899999999999986 444 668
Q ss_pred HHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
++++|+..|+++++++||+++|.+.. ....+.+.++|+.++|+
T Consensus 239 ~~~~l~~~g~~~~~~~~~g~~H~~~~---~~~~~~~~~~~~~~~l~ 281 (282)
T 3fcx_A 239 FIAACTEKKIPVVFRLQEDYDHSYYF---IATFITDHIRHHAKYLN 281 (282)
T ss_dssp HHHHHHHTTCCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCceEEEECCCCCcCHHH---HHhhhHHHHHHHHHhhc
Confidence 99999999999999999999998732 34567778899998874
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=200.82 Aligned_cols=239 Identities=17% Similarity=0.181 Sum_probs=158.1
Q ss_pred ceEEEEEEc-CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 638 QKELIKYQR-KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 638 ~~~~~~~~~-~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
..+.+++.+ ..|.++.+.+|+|+++++.+ ++|+||++||+...... |... ......+++.||+|+
T Consensus 14 ~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~--~~P~vv~lHG~~~~~~~-----------~~~~-~~~~~~~~~~g~~vv 79 (280)
T 3ls2_A 14 WHKQYTHSAVSTHCTMRFAVFLPPGASESN--KVPVLYWLSGLTCTDEN-----------FMQK-AGAFKKAAELGIAIV 79 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTCBTTB--CEEEEEEECCTTCCSHH-----------HHHH-SCCHHHHHHHTCEEE
T ss_pred eEEEEEEechhcCCceEEEEEcCCCCCCCC--CcCEEEEeCCCCCChhh-----------hhcc-hhHHHHHhhCCeEEE
Confidence 345666765 47889999999999876443 59999999997432111 1000 012445667899999
Q ss_pred EcCCC--CCC---------CCCCcccc----------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH
Q 002194 717 GGPTT--PII---------GEGDEEAN----------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (954)
Q Consensus 717 ~~~~~--~~~---------G~G~~~~~----------~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 775 (954)
.++.. +.. |.|.++.. ..+.....+++. .++.+...+ +++++|+|+||||++|+.
T Consensus 80 ~~d~~~~g~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~-~~~~~l~G~S~GG~~a~~ 155 (280)
T 3ls2_A 80 APDTSPRGDNVPNEDSYDFAQGAGFYVNATQAPYNTHFNMYDYVVNELP---ALIEQHFPV-TSTKAISGHSMGGHGALM 155 (280)
T ss_dssp ECCSSCCSTTSCCCSCTTSSTTCCTTCBCCSTTTTTTCBHHHHHHTHHH---HHHHHHSSE-EEEEEEEEBTHHHHHHHH
T ss_pred EeCCcccccccccccccccccCCccccccccccccccccHHHHHHHHHH---HHHHhhCCC-CCCeEEEEECHHHHHHHH
Confidence 96642 110 22222110 022233334433 444444333 479999999999999999
Q ss_pred HHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCC----CCEEEEEeCCCCCCCCchHH-
Q 002194 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLK----KPILLVHGEEDNNSGTLTMQ- 850 (954)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~----~P~Lii~G~~D~~v~~~~~~- 850 (954)
++.++|++|+++++++|+++....++...............+...+|...+.+++ +|+||+||+.|.+++ ...
T Consensus 156 ~a~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~--~~~~ 233 (280)
T 3ls2_A 156 IALKNPQDYVSASAFSPIVNPINCPWGVKAFTGYLGADKTTWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLD--EQLK 233 (280)
T ss_dssp HHHHSTTTCSCEEEESCCSCGGGSHHHHHHHHHHHCSCGGGTGGGCHHHHHHTCCGGGCCCEEEEEETTCTTCC--CCCC
T ss_pred HHHhCchhheEEEEecCccCcccCcchhhHHHhhcCchHHHHHhcCHHHHHHhccccCCCcEEEEEeCCCcccC--Cchh
Confidence 9999999999999999987643221110000001111223344556666666664 599999999999997 644
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 851 SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
+++++++|+..|+++++++||+++|.+.. ....+..+++|+.++|+
T Consensus 234 ~~~~~~~l~~~g~~~~~~~~~g~~H~~~~---~~~~~~~~~~~~~~~l~ 279 (280)
T 3ls2_A 234 PQNLVAVAKQKDYPLTLEMQTGYDHSYFF---ISSFIDQHLVFHHQYLS 279 (280)
T ss_dssp HHHHHHHHHHHTCCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCceEEEeCCCCCchhh---HHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999998732 34567788999999874
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.1e-20 Score=185.90 Aligned_cols=203 Identities=19% Similarity=0.164 Sum_probs=150.4
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
..+.+++++.+| +++++++.|++ +++.|+||++||+++..+.. .......++..|+++||.|+.
T Consensus 5 ~~~~~~~~~~~g-~l~~~~~~p~~-----~~~~~~vv~~HG~~~~~~~~----------~~~~~~~~~~~l~~~g~~v~~ 68 (208)
T 3trd_A 5 TNEDFLIQGPVG-QLEVMITRPKG-----IEKSVTGIICHPHPLHGGTM----------NNKVVTTLAKALDELGLKTVR 68 (208)
T ss_dssp SSSCEEEECSSS-EEEEEEECCSS-----CCCSEEEEEECSCGGGTCCT----------TCHHHHHHHHHHHHTTCEEEE
T ss_pred ccceEEEECCCc-eEEEEEEcCCC-----CCCCCEEEEEcCCCCCCCcc----------CCchHHHHHHHHHHCCCEEEE
Confidence 356788999999 99999998864 22479999999953221110 001112456778889999999
Q ss_pred cCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC
Q 002194 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~ 797 (954)
.+..|+|.+...........+|+.++++++.++ .+.++++++|||+||.+++.++ .+| +++++|+++|..+.
T Consensus 69 ---~d~~g~g~s~~~~~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~~~~~- 140 (208)
T 3trd_A 69 ---FNFRGVGKSQGRYDNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAPPVFY- 140 (208)
T ss_dssp ---ECCTTSTTCCSCCCTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESCCTTS-
T ss_pred ---EecCCCCCCCCCccchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEecccccc-
Confidence 555677776554333456789999999999987 3457999999999999999999 666 89999999986520
Q ss_pred CCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 002194 798 LTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (954)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (954)
.....+..+++|+|++||++|..+| ++.++++++++... ++++++++++|.+
T Consensus 141 -----------------------~~~~~~~~~~~p~l~i~g~~D~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~H~~ 192 (208)
T 3trd_A 141 -----------------------EGFASLTQMASPWLIVQGDQDEVVP--FEQVKAFVNQISSP---VEFVVMSGASHFF 192 (208)
T ss_dssp -----------------------GGGTTCCSCCSCEEEEEETTCSSSC--HHHHHHHHHHSSSC---CEEEEETTCCSSC
T ss_pred -----------------------CCchhhhhcCCCEEEEECCCCCCCC--HHHHHHHHHHccCc---eEEEEeCCCCCcc
Confidence 0112334558999999999999998 88888888876543 7999999999998
Q ss_pred CCcccHHHHHHHHHHHH
Q 002194 878 AARESIMHVLWETDRWL 894 (954)
Q Consensus 878 ~~~~~~~~~~~~i~~fl 894 (954)
... ..++.+.+.+||
T Consensus 193 ~~~--~~~~~~~i~~fl 207 (208)
T 3trd_A 193 HGR--LIELRELLVRNL 207 (208)
T ss_dssp TTC--HHHHHHHHHHHH
T ss_pred ccc--HHHHHHHHHHHh
Confidence 532 356666666665
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=186.55 Aligned_cols=208 Identities=19% Similarity=0.178 Sum_probs=160.0
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
+..+.++++. +|.++.++++.|++ +.|+||++||+.... ..+ .....+..|+++||.|+
T Consensus 10 ~~~~~~~~~~-~g~~l~~~~~~p~~-------~~p~vv~~hG~~~~~-----------~~~--~~~~~~~~l~~~G~~v~ 68 (223)
T 2o2g_A 10 PQEYAVSVSV-GEVKLKGNLVIPNG-------ATGIVLFAHGSGSSR-----------YSP--RNRYVAEVLQQAGLATL 68 (223)
T ss_dssp CCEEEEEEEE-TTEEEEEEEECCTT-------CCEEEEEECCTTCCT-----------TCH--HHHHHHHHHHHHTCEEE
T ss_pred ceeeEEEEec-CCeEEEEEEecCCC-------CceEEEEecCCCCCC-----------Ccc--chHHHHHHHHHCCCEEE
Confidence 5577888886 89999999999864 379999999963111 000 01235667888999999
Q ss_pred EcCCCCCCCCCCcccch------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEe
Q 002194 717 GGPTTPIIGEGDEEAND------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~~------~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (954)
. .+..|+|.+.... .......+|+.++++++..++.+|+++++++|||+||.+++.++.++|++++++|++
T Consensus 69 ~---~d~~g~g~s~~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~ 145 (223)
T 2o2g_A 69 L---IDLLTQEEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSR 145 (223)
T ss_dssp E---ECSSCHHHHHHHHHHCSSTTCHHHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEE
T ss_pred E---EcCCCcCCCCccchhhcccCcHHHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEe
Confidence 9 4555666653321 334567899999999999998889999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEe
Q 002194 791 SGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 870 (954)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~ 870 (954)
+|..+.. ...+.++++|+|++||++|..+| .. . .+.++..+.+++++++
T Consensus 146 ~~~~~~~-------------------------~~~~~~~~~P~l~i~g~~D~~~~--~~-~---~~~~~~~~~~~~~~~~ 194 (223)
T 2o2g_A 146 GGRPDLA-------------------------PSALPHVKAPTLLIVGGYDLPVI--AM-N---EDALEQLQTSKRLVII 194 (223)
T ss_dssp SCCGGGC-------------------------TTTGGGCCSCEEEEEETTCHHHH--HH-H---HHHHHHCCSSEEEEEE
T ss_pred CCCCCcC-------------------------HHHHhcCCCCEEEEEccccCCCC--HH-H---HHHHHhhCCCeEEEEe
Confidence 9853310 12345678999999999998875 33 2 3445555677999999
Q ss_pred CCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 871 PFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 871 ~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
++++|.+...+....+.+.+.+||+++|+
T Consensus 195 ~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 223 (223)
T 2o2g_A 195 PRASHLFEEPGALTAVAQLASEWFMHYLR 223 (223)
T ss_dssp TTCCTTCCSTTHHHHHHHHHHHHHHHHCC
T ss_pred CCCCcccCChHHHHHHHHHHHHHHHHhcC
Confidence 99999986556678889999999999873
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=189.75 Aligned_cols=227 Identities=19% Similarity=0.165 Sum_probs=159.5
Q ss_pred EEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCC
Q 002194 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (954)
Q Consensus 642 ~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~ 721 (954)
+++. .+|.+++++++.|++. +++.|+||++||.+.. .........+..|+++||.|++ +
T Consensus 4 ~~~~-~~g~~l~~~~~~p~~~----~~~~p~vvl~HG~~~~-------------~~~~~~~~~~~~l~~~g~~vi~---~ 62 (251)
T 2wtm_A 4 MYID-CDGIKLNAYLDMPKNN----PEKCPLCIIIHGFTGH-------------SEERHIVAVQETLNEIGVATLR---A 62 (251)
T ss_dssp EEEE-ETTEEEEEEEECCTTC----CSSEEEEEEECCTTCC-------------TTSHHHHHHHHHHHHTTCEEEE---E
T ss_pred eEEe-cCCcEEEEEEEccCCC----CCCCCEEEEEcCCCcc-------------cccccHHHHHHHHHHCCCEEEE---e
Confidence 4454 4889999999998641 1247999999996311 0001112356677889999999 6
Q ss_pred CCCCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC-
Q 002194 722 PIIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL- 798 (954)
Q Consensus 722 ~~~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~- 798 (954)
+.+|+|.+.... .......+|+.++++++.++..+ ++++++||||||.+++.++.++|++++++|+++|......
T Consensus 63 D~~G~G~S~~~~~~~~~~~~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 140 (251)
T 2wtm_A 63 DMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEI 140 (251)
T ss_dssp CCTTSTTSSSCGGGCCHHHHHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHH
T ss_pred cCCCCCCCCCccccCCHHHHHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHH
Confidence 667888775432 23456788999999999766444 4899999999999999999999999999999998643100
Q ss_pred ----------C-CCCCccccchhh------hcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhC
Q 002194 799 ----------T-PFGFQNEDRTLW------EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861 (954)
Q Consensus 799 ----------~-~~~~~~~~~~~~------~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~ 861 (954)
. ............ .........++...+.++++|+|++||++|..+| ++.++++.+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~--~~~~~~~~~~~~-- 216 (251)
T 2wtm_A 141 ARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVP--YEASVAFSKQYK-- 216 (251)
T ss_dssp HHHTEETTEECBTTBCCSEEEETTTEEEETHHHHHHTTCCHHHHHHHCCSCEEEEEETTCSSSC--HHHHHHHHHHSS--
T ss_pred HhhhhhccccCCchhcchHHhhhhccccchHHHHHHHccCHHHHHHhcCCCEEEEEeCCCCCcC--hHHHHHHHHhCC--
Confidence 0 000000000000 0001111233444566789999999999999998 888888877652
Q ss_pred CCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 862 GALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 862 g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
+++++++|+++|.+ .+....+.+.+.+||++++.
T Consensus 217 --~~~~~~~~~~gH~~--~~~~~~~~~~i~~fl~~~~~ 250 (251)
T 2wtm_A 217 --NCKLVTIPGDTHCY--DHHLELVTEAVKEFMLEQIA 250 (251)
T ss_dssp --SEEEEEETTCCTTC--TTTHHHHHHHHHHHHHHHHC
T ss_pred --CcEEEEECCCCccc--chhHHHHHHHHHHHHHHhcc
Confidence 57999999999998 67788899999999998874
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=199.41 Aligned_cols=236 Identities=14% Similarity=0.129 Sum_probs=157.0
Q ss_pred ceEEEEEEc-CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 638 QKELIKYQR-KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 638 ~~~~~~~~~-~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
..+.+++.+ ..|.++.+.+|+|+++. ++++|+||++||+...... |.... .....+.+.||+|+
T Consensus 14 ~~~~~~~~s~~~g~~~~~~v~~P~~~~---~~~~p~vv~lHG~~~~~~~-----------~~~~~-~~~~~~~~~g~~vv 78 (278)
T 3e4d_A 14 MQGVFSHQSETLKSEMTFAVYVPPKAI---HEPCPVVWYLSGLTCTHAN-----------VMEKG-EYRRMASELGLVVV 78 (278)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGG---TSCEEEEEEECCTTCCSHH-----------HHHHS-CCHHHHHHHTCEEE
T ss_pred cEEEEEEeccccCCcceEEEEcCCCCC---CCCCCEEEEEcCCCCCccc-----------hhhcc-cHHHHHhhCCeEEE
Confidence 345566654 47899999999998764 2359999999997422111 10000 02334556799999
Q ss_pred EcCCCCCCCCCCcccch-------------------------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHH
Q 002194 717 GGPTTPIIGEGDEEAND-------------------------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAF 771 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~~-------------------------~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~ 771 (954)
.++.+ |+|.+.... .+.....+ ++++++.+...+|+++++|+|||+||+
T Consensus 79 ~~d~~---g~G~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~~i~l~G~S~GG~ 152 (278)
T 3e4d_A 79 CPDTS---PRGNDVPDELTNWQMGKGAGFYLDATEEPWSEHYQMYSYVTE---ELPALIGQHFRADMSRQSIFGHSMGGH 152 (278)
T ss_dssp ECCSS---CCSTTSCCCTTCTTSBTTBCTTSBCCSTTTTTTCBHHHHHHT---HHHHHHHHHSCEEEEEEEEEEETHHHH
T ss_pred ecCCc---ccCcccccccccccccCCccccccCCcCcccchhhHHHHHHH---HHHHHHHhhcCCCcCCeEEEEEChHHH
Confidence 95543 443321110 11122222 355666666567889999999999999
Q ss_pred HHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCC--CCEEEEEeCCCCCCCCchH
Q 002194 772 MTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLK--KPILLVHGEEDNNSGTLTM 849 (954)
Q Consensus 772 ~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~--~P~Lii~G~~D~~v~~~~~ 849 (954)
+|+.++.++|++|+++|+++|+++....++...............+...+|...+.+++ +|+||+||+.|.+++ ..
T Consensus 153 ~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~--~~ 230 (278)
T 3e4d_A 153 GAMTIALKNPERFKSCSAFAPIVAPSSADWSEPALEKYLGADRAAWRRYDACSLVEDGARFPEFLIDQGKADSFLE--KG 230 (278)
T ss_dssp HHHHHHHHCTTTCSCEEEESCCSCGGGCTTTHHHHHHHHCSCGGGGGGGCHHHHHHTTCCCSEEEEEEETTCTTHH--HH
T ss_pred HHHHHHHhCCcccceEEEeCCcccccCCccchhhHHHhcCCcHHHHHhcChhhHhhcCCCCCcEEEEecCCCcccc--cc
Confidence 99999999999999999999987644333221100011111222334555655555543 599999999999976 42
Q ss_pred H-HHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 850 Q-SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 850 ~-~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
. ++++.++|+..|++++++++|+++|.+.. ....+.++++|+.++|+
T Consensus 231 ~~~~~~~~~l~~~g~~~~~~~~~g~~H~~~~---~~~~~~~~l~~~~~~l~ 278 (278)
T 3e4d_A 231 LRPWLFEEAIKGTDIGLTLRMHDRYDHSYYF---ISTFMDDHLKWHAERLG 278 (278)
T ss_dssp TCTHHHHHHHTTSSCEEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHcCCCceEEEeCCCCcCHHH---HHHHHHHHHHHHHHhcC
Confidence 2 78999999999999999999999998632 34567788899988863
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-19 Score=184.15 Aligned_cols=211 Identities=13% Similarity=0.091 Sum_probs=158.0
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
...+.+++++.+| ++.++++.|++-.+ .+.|+||++||++...+.. ........+..|+++||.|+
T Consensus 8 ~~~~~~~~~~~~g-~~~~~~~~p~~~~~---~~~~~vv~~HG~~~~~~~~----------~~~~~~~~~~~l~~~g~~v~ 73 (220)
T 2fuk_A 8 TESAALTLDGPVG-PLDVAVDLPEPDVA---VQPVTAIVCHPLSTEGGSM----------HNKVVTMAARALRELGITVV 73 (220)
T ss_dssp SSCEEEEEEETTE-EEEEEEECCCTTSC---CCSEEEEEECSCTTTTCST----------TCHHHHHHHHHHHTTTCEEE
T ss_pred ccceEEEEeCCCC-eEEEEEEeCCCCCc---cccCEEEEECCCCCcCCcc----------cchHHHHHHHHHHHCCCeEE
Confidence 3468889999898 89999999975111 2379999999964221110 00111245667888999999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC
Q 002194 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (954)
.+ +.+|+|.+...........+|+.++++++.++. +.++++++|||+||.+++.++.++ +++++|+++|..+.
T Consensus 74 ~~---d~~g~g~s~~~~~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~ 146 (220)
T 2fuk_A 74 RF---NFRSVGTSAGSFDHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGR 146 (220)
T ss_dssp EE---CCTTSTTCCSCCCTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTT
T ss_pred EE---ecCCCCCCCCCcccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccc
Confidence 94 455777665443444567899999999999874 667999999999999999999887 79999999987543
Q ss_pred CCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 002194 797 TLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876 (954)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 876 (954)
.. +. .+. ...|+|++||++|..+| .+.++++++.++ .+++++++++++|.
T Consensus 147 ~~---------------------~~---~~~-~~~p~l~i~g~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~H~ 196 (220)
T 2fuk_A 147 WD---------------------FS---DVQ-PPAQWLVIQGDADEIVD--PQAVYDWLETLE---QQPTLVRMPDTSHF 196 (220)
T ss_dssp BC---------------------CT---TCC-CCSSEEEEEETTCSSSC--HHHHHHHHTTCS---SCCEEEEETTCCTT
T ss_pred hh---------------------hh---hcc-cCCcEEEEECCCCcccC--HHHHHHHHHHhC---cCCcEEEeCCCCce
Confidence 21 00 111 25799999999999998 888888887764 35799999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhccc
Q 002194 877 YAARESIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 877 ~~~~~~~~~~~~~i~~fl~~~l~~ 900 (954)
+.. ....+.+.+.+||.+++..
T Consensus 197 ~~~--~~~~~~~~i~~~l~~~l~~ 218 (220)
T 2fuk_A 197 FHR--KLIDLRGALQHGVRRWLPA 218 (220)
T ss_dssp CTT--CHHHHHHHHHHHHGGGCSS
T ss_pred ehh--hHHHHHHHHHHHHHHHhhc
Confidence 854 3567888999999998853
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-18 Score=186.88 Aligned_cols=259 Identities=12% Similarity=0.036 Sum_probs=180.8
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC-CceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~~~~~~ 241 (954)
..|++|++.+ ++.+.+... ...+..++|||||++|++.. ...|+++|+++ ++..+++......
T Consensus 22 ~~i~~~d~~~----~~~~~~~~~--~~~v~~~~~spdg~~l~~~~----------~~~i~~~d~~~~~~~~~~~~~~~~~ 85 (297)
T 2ojh_A 22 SSIEIFNIRT----RKMRVVWQT--PELFEAPNWSPDGKYLLLNS----------EGLLYRLSLAGDPSPEKVDTGFATI 85 (297)
T ss_dssp EEEEEEETTT----TEEEEEEEE--SSCCEEEEECTTSSEEEEEE----------TTEEEEEESSSCCSCEECCCTTCCC
T ss_pred eeEEEEeCCC----CceeeeccC--CcceEeeEECCCCCEEEEEc----------CCeEEEEeCCCCCCceEeccccccc
Confidence 5899999854 555555543 24688999999999999964 34899999999 8888776544211
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
.+..+.|+|||+.|++..... + +...||.+++
T Consensus 86 ---~~~~~~~spdg~~l~~~~~~~--------------------------------------~-------~~~~l~~~~~ 117 (297)
T 2ojh_A 86 ---CNNDHGISPDGALYAISDKVE--------------------------------------F-------GKSAIYLLPS 117 (297)
T ss_dssp ---BCSCCEECTTSSEEEEEECTT--------------------------------------T-------SSCEEEEEET
T ss_pred ---cccceEECCCCCEEEEEEeCC--------------------------------------C-------CcceEEEEEC
Confidence 156899999999999872100 0 2456999998
Q ss_pred -CCceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002194 322 -DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 -~G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
++..+.+........++|||||++|+|...... ...+|.+++++++.+.+.... ..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~----------~~~l~~~~~~~~~~~~~~~~~-------------~~ 174 (297)
T 2ojh_A 118 TGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQ----------VFDIYSMDIDSGVETRLTHGE-------------GR 174 (297)
T ss_dssp TCCCCEECCSSSSEEEEEECTTSSEEEEEEEETT----------EEEEEEEETTTCCEEECCCSS-------------SC
T ss_pred CCCceEEeecCCCccceEECCCCCEEEEEECCCC----------ceEEEEEECCCCcceEcccCC-------------Cc
Confidence 777777776655777899999999998774432 114555556666666655432 23
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccc--
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT-- 478 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~-- 478 (954)
+..+.|+|||+.+++.... +....||.++. .++..+.+......+..+.|+|||++|++.+....
T Consensus 175 ~~~~~~s~dg~~l~~~~~~----------~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 175 NDGPDYSPDGRWIYFNSSR----------TGQMQIWRVRV---DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp EEEEEECTTSSEEEEEECT----------TSSCEEEEEET---TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred cccceECCCCCEEEEEecC----------CCCccEEEECC---CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCC
Confidence 4578999999987776211 22457788774 56677777766666778999999999999876532
Q ss_pred -----cceEEEEEcCCCCCCCcEEEec--CCCCCccCCCCCCCeeeccCCcEEEEEEe
Q 002194 479 -----RRTRTWVISPGSKDVAPRILFD--RSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 479 -----~~~~l~~~d~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (954)
....|++++++++ +...+.. .....+.. +.|+|||++|++...
T Consensus 242 ~~~~~~~~~l~~~d~~~~--~~~~~~~~~~~~~~~~~------~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGG--NVETLFDLFGGQGTMNS------PNWSPDGDEFAYVRY 291 (297)
T ss_dssp SCCSSEEEEEEEEETTSC--SCEEEEEEEESTTTSCS------CCBCTTSSEEEEEEE
T ss_pred cccccCceEEEEEecCCC--CceeeeccCCCCccccc------ceECCCCCEEEEEEe
Confidence 2367999999886 3333332 22222222 789999999999874
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-19 Score=200.38 Aligned_cols=236 Identities=17% Similarity=0.151 Sum_probs=166.6
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcE
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (954)
..+..+.+++++.||..+.++++.|++ .+ .++.|+||++||+.... . .+...+...|+++||.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~~~~~~p~~-~~--~~~~p~vv~~hG~~~~~-----------~---~~~~~~~~~l~~~G~~ 126 (367)
T 2hdw_A 64 AKVEHRKVTFANRYGITLAADLYLPKN-RG--GDRLPAIVIGGPFGAVK-----------E---QSSGLYAQTMAERGFV 126 (367)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEEEESS-CC--SSCEEEEEEECCTTCCT-----------T---SHHHHHHHHHHHTTCE
T ss_pred CCceeEEEEEecCCCCEEEEEEEeCCC-CC--CCCCCEEEEECCCCCcc-----------h---hhHHHHHHHHHHCCCE
Confidence 345678899999999999999999976 22 23589999999963110 0 1111356778899999
Q ss_pred EEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEec
Q 002194 715 ILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (954)
Q Consensus 715 V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (954)
|+.+ +.+|+|.+.... ......++|+.++++++.++..+|.++++++|||+||.+++.++.++| .++++|+++
T Consensus 127 v~~~---d~~g~g~s~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~ 202 (367)
T 2hdw_A 127 TLAF---DPSYTGESGGQPRNVASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTST 202 (367)
T ss_dssp EEEE---CCTTSTTSCCSSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEES
T ss_pred EEEE---CCCCcCCCCCcCccccchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEec
Confidence 9994 445666554321 225678899999999999998888899999999999999999999997 599999998
Q ss_pred cCCCC-----CCCC--------------------------CC----Cc---ccc--------------------------
Q 002194 792 GAYNR-----TLTP--------------------------FG----FQ---NED-------------------------- 807 (954)
Q Consensus 792 ~~~~~-----~~~~--------------------------~~----~~---~~~-------------------------- 807 (954)
|.... .... .. .. ...
T Consensus 203 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (367)
T 2hdw_A 203 MYDMTRVMSKGYNDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGN 282 (367)
T ss_dssp CCCHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTC
T ss_pred cccccHHHhhhhccccchHHHHHHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccc
Confidence 64210 0000 00 00 000
Q ss_pred chhhhcHHHHHhcCcccccCCCC-CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHH
Q 002194 808 RTLWEATSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886 (954)
Q Consensus 808 ~~~~~~~~~~~~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~ 886 (954)
.........+...++...+.+++ +|+|++||++|. + ..++++++++ .+.+++++++|+++|..........+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~i~~~PvLii~G~~D~--~--~~~~~~~~~~---~~~~~~~~~~~g~gH~~~~~~~~~~~ 355 (367)
T 2hdw_A 283 AWTMTTPLSFMNMPILTYIKEISPRPILLIHGERAH--S--RYFSETAYAA---AAEPKELLIVPGASHVDLYDRLDRIP 355 (367)
T ss_dssp CCBTTTHHHHTTSCSCTTGGGGTTSCEEEEEETTCT--T--HHHHHHHHHH---SCSSEEEEEETTCCTTHHHHCTTTSC
T ss_pred hhhhhhHHHhcCCChhHhHHhhcCCceEEEecCCCC--C--HHHHHHHHHh---CCCCeeEEEeCCCCeeeeecCchhHH
Confidence 00001123344556777888898 999999999998 6 7888888776 56789999999999974211111125
Q ss_pred HHHHHHHHHHhc
Q 002194 887 LWETDRWLQKYC 898 (954)
Q Consensus 887 ~~~i~~fl~~~l 898 (954)
.+.+.+||+++|
T Consensus 356 ~~~i~~fl~~~l 367 (367)
T 2hdw_A 356 FDRIAGFFDEHL 367 (367)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhC
Confidence 788999999875
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-19 Score=197.17 Aligned_cols=330 Identities=15% Similarity=0.165 Sum_probs=196.6
Q ss_pred hHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCcee
Q 002194 101 EIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (954)
Q Consensus 101 ~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~ 180 (954)
.+++++..+.+..++| ||++|||+... .+...+ .....||++++.+ ++.+
T Consensus 7 ~~~~l~~~~~~~~~~~--dG~~i~~~~~~-------------------~~~~~~-----~~~~~l~~~d~~~----~~~~ 56 (347)
T 2gop_A 7 NEKTFAKFAYLSDPRT--KGELVAYVLTK-------------------ANLKDN-----KYENTIVIENLKN----NARR 56 (347)
T ss_dssp ---CCCCSCEEEEEEE--ETTEEEEEEEE-------------------EETTTT-----EEEEEEEEEETTT----CCEE
T ss_pred CcccceeeEEcccceE--CCcEEEEEEee-------------------cCcccC-----CccceEEEEeCCC----CceE
Confidence 3456677777788899 99999998763 211111 1225899999854 5556
Q ss_pred eeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEE
Q 002194 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVC 260 (954)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~ 260 (954)
+| ..+..|+|||||++|+|.+... +++..+||++++++|+.++++..+. +..+.|||||+.|++
T Consensus 57 ~l------~~~~~~~~SpDg~~la~~~~~~----~~~~~~l~~~~~~~g~~~~l~~~~~------~~~~~wspdg~~l~~ 120 (347)
T 2gop_A 57 FI------ENATMPRISPDGKKIAFMRANE----EKKVSEIWVADLETLSSKKILEAKN------IRSLEWNEDSRKLLI 120 (347)
T ss_dssp EE------ESCEEEEECTTSSEEEEEEEET----TTTEEEEEEEETTTTEEEEEEEESE------EEEEEECTTSSEEEE
T ss_pred Ec------ccCCCeEECCCCCEEEEEEecc----CCCcceEEEEECCCCceEEEEcCCC------ccceeECCCCCEEEE
Confidence 65 2367899999999999987532 2357789999999999988876543 458999999999999
Q ss_pred EecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCCccccccc
Q 002194 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPPAVYTSLD 338 (954)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~~~~~~~~ 338 (954)
+........ .+ + ..+.+....++..+......+||++++ +|+. +.++.. .+..+.
T Consensus 121 ~~~~~~~~~-----~~----------------~-~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~ 177 (347)
T 2gop_A 121 VGFKRREDE-----DF----------------I-FEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGI 177 (347)
T ss_dssp EEECCCC-------------------------------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEE
T ss_pred EEccCCCcC-----Cc----------------E-EEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-Cccccc
Confidence 853210000 00 0 001111122221111113467999999 7876 677653 667889
Q ss_pred cCCCCcEEEEEeecCCcccccccCCC-CcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEE
Q 002194 339 PSPDEKYILISSIHRPYSFIVPCGRF-PRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (954)
Q Consensus 339 ~SpDGk~l~~~s~~~~~~~~~~~~~~-~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~ 417 (954)
||||| |+|++....... ... ...|++++ +++.+.++.. . ....+||||+.|+|..
T Consensus 178 ~spdg--~~~~~~~~~~~~----~~~~~~~l~~~d--~~~~~~l~~~-~---------------~~~~~spdg~~l~~~~ 233 (347)
T 2gop_A 178 WHRDK--IVVNVPHREIIP----QYFKFWDIYIWE--DGKEEKMFEK-V---------------SFYAVDSDGERILLYG 233 (347)
T ss_dssp EETTE--EEEEEECCCSSC----CSSCCEEEEEEE--TTEEEEEEEE-E---------------SEEEEEECSSCEEEEE
T ss_pred CCCCe--EEEEEecccccc----cccccccEEEeC--CCceEEeccC-c---------------ceeeECCCCCEEEEEE
Confidence 99999 777664322100 001 23677887 6666666542 1 1223599999998874
Q ss_pred EeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-ccccCc-eeeccCCceEEEEEeccccceEEEEEcCCCCCCCc
Q 002194 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGG-ISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP 495 (954)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~-~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 495 (954)
.....+ ......||+++ +++.+.++.. +..+.. +.|+ || +++....++ ..+|| ++ ++ +.
T Consensus 234 ~~~~~~-----~~~~~~l~~~d-----~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~-~~~l~-~~-~g---~~ 294 (347)
T 2gop_A 234 KPEKKY-----MSEHNKLYIYD-----GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEG-SVNLY-IW-DG---EI 294 (347)
T ss_dssp CCSSSC-----CCSSCEEEEEC-----SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEETT-EEEEE-EE-SS---SE
T ss_pred ccccCC-----ccccceEEEEC-----CCceEeccccCCcccCCccEEc-Cc--EEEEEecCC-cEEEE-Ec-CC---ce
Confidence 322110 01245788875 3455566543 455665 8999 88 666555444 47899 88 43 33
Q ss_pred EEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCc
Q 002194 496 RILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (954)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 572 (954)
..++.. ...+.. ++|+| . +++..... .....||.+| |+.++|+..+.
T Consensus 295 ~~~~~~-~~~v~~------~~~s~--~-~~~~~~~~-----------------~~~~~l~~~~---g~~~~lt~~n~ 341 (347)
T 2gop_A 295 KPIAKG-RHWIMG------FDVDE--I-VVYLKETA-----------------TRLRELFTWD---GEEKQLTDYND 341 (347)
T ss_dssp EEEECS-SSEEEE------EEESS--S-EEEEEECS-----------------SSCCEEEEES---SSEEECCCTTS
T ss_pred EEEecC-CCeEEe------eeeeC--c-EEEEEcCC-----------------CChHHheEeC---CcEEEeccccH
Confidence 444433 222222 67787 3 44443211 1223688888 67788887664
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-20 Score=200.80 Aligned_cols=231 Identities=17% Similarity=0.172 Sum_probs=165.3
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH-HCCc
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGF 713 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~ 713 (954)
..+..+.+++++.+|..|.+++|.|.+ ++.|+||++|||.+..+. ...+ ...+..|+ +.||
T Consensus 56 ~~~~~~~~~i~~~~G~~i~~~~~~P~~------~~~p~vv~~HGgG~~~g~--------~~~~----~~~~~~la~~~g~ 117 (317)
T 3qh4_A 56 AGVAVADDVVTGEAGRPVPVRIYRAAP------TPAPVVVYCHAGGFALGN--------LDTD----HRQCLELARRARC 117 (317)
T ss_dssp HCCEEEEEEEECTTSCEEEEEEEECSC------SSEEEEEEECCSTTTSCC--------TTTT----HHHHHHHHHHHTS
T ss_pred CcceEEEEEecCCCCCeEEEEEEecCC------CCCcEEEEECCCcCccCC--------hHHH----HHHHHHHHHHcCC
Confidence 345678899999999999999999974 248999999998543321 1111 23455666 4699
Q ss_pred EEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhCCC----cccE
Q 002194 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCC 786 (954)
Q Consensus 714 ~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a 786 (954)
.|+.++++...++ .+...++|+.++++|+.++ ..+|++||+|+|+|+||++|+.++.+.++ .+++
T Consensus 118 ~vv~~dyr~~p~~--------~~p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~ 189 (317)
T 3qh4_A 118 AVVSVDYRLAPEH--------PYPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIF 189 (317)
T ss_dssp EEEEECCCCTTTS--------CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCE
T ss_pred EEEEecCCCCCCC--------CCchHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeE
Confidence 9999777644332 2356788999999999886 45788999999999999999999987554 4999
Q ss_pred EEEeccCCCCCCCCCC--Cc-----c--ccchhhhcHHHHHh-------cCcccccCCCC--CCEEEEEeCCCCCCCCch
Q 002194 787 GIARSGAYNRTLTPFG--FQ-----N--EDRTLWEATSTYVE-------MSPFMSANKLK--KPILLVHGEEDNNSGTLT 848 (954)
Q Consensus 787 ~v~~~~~~~~~~~~~~--~~-----~--~~~~~~~~~~~~~~-------~sp~~~~~~~~--~P~Lii~G~~D~~v~~~~ 848 (954)
+++++|+++....... +. . .....|. .|.. .+|.. ...+. .|+||+||+.|.++
T Consensus 190 ~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~-~~~l~~lpP~li~~G~~D~~~---- 261 (317)
T 3qh4_A 190 QLLHQPVLDDRPTASRSEFRATPAFDGEAASLMWR---HYLAGQTPSPESVPGR-RGQLAGLPATLITCGEIDPFR---- 261 (317)
T ss_dssp EEEESCCCCSSCCHHHHHTTTCSSSCHHHHHHHHH---HHHTTCCCCTTTCGGG-CSCCTTCCCEEEEEEEESTTH----
T ss_pred EEEECceecCCCCcCHHHhcCCCCcCHHHHHHHHH---HhcCCCCCCcccCCCc-ccccCCCCceeEEecCcCCCc----
Confidence 9999998875411000 00 0 0001111 1111 12221 12222 49999999999874
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCCCcCC----CcccHHHHHHHHHHHHHHhcc
Q 002194 849 MQSDRFFNALKGHGALCRLVILPFESHGYA----ARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 849 ~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~----~~~~~~~~~~~i~~fl~~~l~ 899 (954)
.++.++.++|+..|+++++++||+++|++. ..+...++++.+.+||++++.
T Consensus 262 ~~~~~~a~~l~~~g~~~~l~~~~g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 316 (317)
T 3qh4_A 262 DEVLDYAQRLLGAGVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAFY 316 (317)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEEEETTHHHHCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHcCCCEEEEEeCCCccchhhhcCCchHHHHHHHHHHHHHHHHhC
Confidence 578899999999999999999999999863 234567888999999999874
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=215.13 Aligned_cols=248 Identities=16% Similarity=0.216 Sum_probs=172.9
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHH---HHHHHCCc
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV---LLWLARGF 713 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~la~~G~ 713 (954)
+..+.++++..||.+|++++|+|++. +++|+||++||..... .........+...+. +.|+++||
T Consensus 23 ~~~~~v~i~~~DG~~L~~~~~~P~~~-----~~~P~vl~~hgyg~~~-------~~~~~~~~~~~~~~~~~~~~la~~Gy 90 (615)
T 1mpx_A 23 YIKREVMIPMRDGVKLHTVIVLPKGA-----KNAPIVLTRTPYDASG-------RTERLASPHMKDLLSAGDDVFVEGGY 90 (615)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTC-----CSEEEEEEEESSCHHH-------HTCSSCCSSHHHHSCGGGHHHHHTTC
T ss_pred CEEEEEEEECCCCCEEEEEEEeCCCC-----CCeeEEEEEcCCCCcc-------ccccccccccccccchhHHHHHhCCe
Confidence 45678899999999999999999752 3589999999742110 000000000000111 68899999
Q ss_pred EEEEcCCCCCCCCCCcccch-----hhHH---HHHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCcc
Q 002194 714 AILGGPTTPIIGEGDEEAND-----RFVE---QLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (954)
Q Consensus 714 ~V~~~~~~~~~G~G~~~~~~-----~~~~---~~~~D~~~av~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~ 784 (954)
+|+..+++|..+.+...... .+.. ..++|+.++++||.++ ++.| .||+++|+||||++++++++..|+.+
T Consensus 91 ~Vv~~D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l 169 (615)
T 1mpx_A 91 IRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPAL 169 (615)
T ss_dssp EEEEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTE
T ss_pred EEEEECCCCCCCCCCccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCce
Confidence 99997766554443322111 1122 6789999999999998 7776 59999999999999999999888999
Q ss_pred cEEEEeccCCCCCC-CCC---CC-cc-----------------------cc----------------------chhhh--
Q 002194 785 CCGIARSGAYNRTL-TPF---GF-QN-----------------------ED----------------------RTLWE-- 812 (954)
Q Consensus 785 ~a~v~~~~~~~~~~-~~~---~~-~~-----------------------~~----------------------~~~~~-- 812 (954)
+|+|+.+++.|... ..+ +. .. .. ...|+
T Consensus 170 ~a~v~~~~~~d~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 249 (615)
T 1mpx_A 170 KVAVPESPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKL 249 (615)
T ss_dssp EEEEEESCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHH
T ss_pred EEEEecCCccccccccccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHHHHH
Confidence 99999999988422 111 00 00 00 00011
Q ss_pred -----cHHHHHhcCcccccCC--CCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCC---cEEEEEeCCCCCcCCC---
Q 002194 813 -----ATSTYVEMSPFMSANK--LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA---LCRLVILPFESHGYAA--- 879 (954)
Q Consensus 813 -----~~~~~~~~sp~~~~~~--~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~H~~~~--- 879 (954)
..+.|.+.||..++++ |++|+|++||..|.+ + ..++.++|++|+..|+ ++++++.|. +|....
T Consensus 250 ~~~~~~d~~w~~~Sp~~~~~~~~I~~P~Lii~G~~D~~-~--~~~~~~~~~aL~~~g~p~~~~~lvigp~-~H~~~~~~~ 325 (615)
T 1mpx_A 250 TEHAAYDAFWQEQALDKVMARTPLKVPTMWLQGLWDQE-D--MWGAIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDG 325 (615)
T ss_dssp HHTCSSCHHHHTTCHHHHHHTSCCCSCEEEEEETTCSS-C--SSHHHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCC
T ss_pred HhCCCcChhhhhcChhhhhhccCCCCCEEEeecccCcc-c--cccHHHHHHHHHhhcCCCcCCEEEECCC-CCCCccccc
Confidence 0133456788889999 999999999999997 7 7899999999998864 489999998 686510
Q ss_pred ---------ccc-HHHHHHHHHHHHHHhcccC
Q 002194 880 ---------RES-IMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 880 ---------~~~-~~~~~~~i~~fl~~~l~~~ 901 (954)
.+. .....+.+++||++||+..
T Consensus 326 ~~~~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 357 (615)
T 1mpx_A 326 SALGALNFEGDTARQFRHDVLRPFFDQYLVDG 357 (615)
T ss_dssp SEETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred cccCccccCcccchhhhhhHHHHHHHHHhcCC
Confidence 111 1233677899999999865
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=199.79 Aligned_cols=278 Identities=13% Similarity=0.048 Sum_probs=168.1
Q ss_pred CCEEEEEEecCCCCceEEEEECCCCceeEeecCCC-C-CCC---cCCCceEEEEEEcCCCeEEEEEEEcCCCC-CCCCCC
Q 002194 595 QLKILTSKESKTENTQYYIQSWPDKKSCQITDFPH-P-YPQ---LASLQKELIKYQRKDGVQLSATLYLPPGY-DPSKDG 668 (954)
Q Consensus 595 g~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~~-~-~~~---~~~~~~~~~~~~~~~g~~l~~~l~~P~~~-~~~~~~ 668 (954)
...+++...+...+...+++. .+|++.++..... + .+. ...+..+.+.+.+ +..+.+.+|+|++. .+ .+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~r~~~~~~~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~~P~~~~~~--~~ 81 (338)
T 2o7r_A 7 ETTGSSDPNTNLLKYLPIVLN-PDRTITRPIQIPSTAASPDPTSSSPVLTKDLALNP--LHNTFVRLFLPRHALYN--SA 81 (338)
T ss_dssp -----------CTTTCSCEEC-TTSCEECCSCCCBCCCCCCTTSSCSEEEEEEEEET--TTTEEEEEEEEGGGGGS--SC
T ss_pred CCceeeccCcccccccceEEC-CCCeEEecCCCCCCCCCCCcccCCCEEEEEEEecC--CCCeEEEEEeCCCCCcC--CC
Confidence 345555555544454445555 3565555422111 1 111 1335667788875 45578888999753 11 23
Q ss_pred CccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH-HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHH
Q 002194 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAV 747 (954)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av 747 (954)
+.|+||++|||.+..+... . .....++..|+ ++||.|+.+++++. +.. .....++|+.+++
T Consensus 82 ~~p~vv~~HGgg~~~~~~~--------~--~~~~~~~~~la~~~g~~vv~~d~rg~---~~~-----~~~~~~~d~~~~~ 143 (338)
T 2o7r_A 82 KLPLVVYFHGGGFILFSAA--------S--TIFHDFCCEMAVHAGVVIASVDYRLA---PEH-----RLPAAYDDAMEAL 143 (338)
T ss_dssp CEEEEEEECCSTTTSCCTT--------B--HHHHHHHHHHHHHHTCEEEEEECCCT---TTT-----CTTHHHHHHHHHH
T ss_pred CceEEEEEcCCcCcCCCCC--------c--hhHHHHHHHHHHHCCcEEEEecCCCC---CCC-----CCchHHHHHHHHH
Confidence 5899999999865432211 0 00123456677 78999999766543 322 1245688999999
Q ss_pred HHHHHcC------CCCCCcEEEEeeChHHHHHHHHHHhCCC--------cccEEEEeccCCCCCCCCCC--------C-c
Q 002194 748 EEVVRRG------VAHPSKIAVGGHSYGAFMTANLLAHAPH--------LFCCGIARSGAYNRTLTPFG--------F-Q 804 (954)
Q Consensus 748 ~~l~~~~------~~d~~ri~l~G~S~GG~~a~~~a~~~p~--------~~~a~v~~~~~~~~~~~~~~--------~-~ 804 (954)
+|+.++. .+|+++++|+|||+||++|+.++.++|+ +++++|+++|.++....... + .
T Consensus 144 ~~l~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~ 223 (338)
T 2o7r_A 144 QWIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEPGFGGSKRTGSELRLANDSRLP 223 (338)
T ss_dssp HHHHTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEEEEESCCCCCSSCCHHHHHTTTCSSSC
T ss_pred HHHHhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEEEEECCccCCCcCChhhhccCCCcccC
Confidence 9998863 2677899999999999999999999887 89999999998764321000 0 0
Q ss_pred -cccchhhhcH------HHHHhcCccc---------ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002194 805 -NEDRTLWEAT------STYVEMSPFM---------SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (954)
Q Consensus 805 -~~~~~~~~~~------~~~~~~sp~~---------~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (954)
......|... ......+|+. .+.++.+|+||+||++|.+++ .+.+++++|+..+.+++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~Lvi~G~~D~~~~----~~~~~~~~l~~~~~~~~~~ 299 (338)
T 2o7r_A 224 TFVLDLIWELSLPMGADRDHEYCNPTAESEPLYSFDKIRSLGWRVMVVGCHGDPMID----RQMELAERLEKKGVDVVAQ 299 (338)
T ss_dssp HHHHHHHHHHHSCTTCCTTSTTTCCC----CCTHHHHHHHHTCEEEEEEETTSTTHH----HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCcccCCCCCCcccccHhhhcCCCCCEEEEECCCCcchH----HHHHHHHHHHHCCCcEEEE
Confidence 0000011100 0000011221 112245699999999998863 5678899999999999999
Q ss_pred EeCCCCCcCCC--cccHHHHHHHHHHHHHHhcc
Q 002194 869 ILPFESHGYAA--RESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 869 ~~~~~~H~~~~--~~~~~~~~~~i~~fl~~~l~ 899 (954)
++++++|.+.. .+....+.+.+.+||.+++.
T Consensus 300 ~~~g~gH~~~~~~~~~~~~~~~~i~~Fl~~~~~ 332 (338)
T 2o7r_A 300 FDVGGYHAVKLEDPEKAKQFFVILKKFVVDSCT 332 (338)
T ss_dssp EESSCCTTGGGTCHHHHHHHHHHHHHHHC----
T ss_pred EECCCceEEeccChHHHHHHHHHHHHHHHhhcc
Confidence 99999998742 23346788899999988764
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-18 Score=206.34 Aligned_cols=333 Identities=11% Similarity=0.065 Sum_probs=204.8
Q ss_pred hHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCcee
Q 002194 101 EIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (954)
Q Consensus 101 ~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~ 180 (954)
++++++..+..+.+ +|||++++|...+ .+... ..||+.+.. + ++.+
T Consensus 66 ~~~~~~~~~~~~~p--~~dG~~~~~~~~~----------------------~~~~~------~~l~~~~~~--~--~~~~ 111 (710)
T 2xdw_A 66 RMTELYDYPKYSCH--FKKGKRYFYFYNT----------------------GLQNQ------RVLYVQDSL--E--GEAR 111 (710)
T ss_dssp HHHHHHCSCEECCC--EEETTEEEEEEEC----------------------SSCSS------CEEEEESST--T--SCCE
T ss_pred HHHHhhccccCCCC--EEECCEEEEEEEc----------------------CCceE------EEEEEEcCC--C--CCcE
Confidence 45666766565555 4999999999874 11111 256776542 2 4444
Q ss_pred eeec---CCCCC--cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCC
Q 002194 181 EIQG---FPDGA--KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS 255 (954)
Q Consensus 181 ~lt~---~~~~~--~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG 255 (954)
.|.. +..+. .+..++|||||++|||..+.. ++...+||++|+++|+..+++..... +..++|||||
T Consensus 112 ~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~----G~~~~~i~v~d~~tg~~~~~~~~~~~-----~~~~~wspDg 182 (710)
T 2xdw_A 112 VFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSAS----GSDWVTIKFMKVDGAKELPDVLERVK-----FSCMAWTHDG 182 (710)
T ss_dssp EEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEET----TCSCEEEEEEETTTTEEEEEEEEEEC-----SCCEEECTTS
T ss_pred EEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCC----CCceEEEEEEECCCCCCCcccccCcc-----cceEEEEeCC
Confidence 4421 22222 467899999999999988643 44456999999999988775432221 4579999999
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce--eEcCCC-
Q 002194 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV--KEIGPP- 331 (954)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~--~~l~~~- 331 (954)
+.|+|+......... .+.. ... ....+||++++ ++.. +.+...
T Consensus 183 ~~l~~~~~~~~~~~~------~~~~-------------------~~~--------~~~~~v~~~~l~t~~~~~~~v~~~~ 229 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKS------DGTE-------------------TST--------NLHQKLYYHVLGTDQSEDILCAEFP 229 (710)
T ss_dssp SEEEEEECCCCSSCC------SSSC-------------------CCC--------CCCCEEEEEETTSCGGGCEEEECCT
T ss_pred CEEEEEEECCccccc------cccc-------------------ccc--------CCCCEEEEEECCCCcccceEEeccC
Confidence 999998543221100 0000 000 02356999999 6642 333222
Q ss_pred ---ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC------c--eEEEeccCCCcccCCccccccccC
Q 002194 332 ---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG------I--FVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 332 ---~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g------~--~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
....++.|||||++|++.+..... ...+++++|+++ + ..+.++.... .
T Consensus 230 ~~~~~~~~~~~SpDg~~l~~~~~~~~~--------~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~-------------~ 288 (710)
T 2xdw_A 230 DEPKWMGGAELSDDGRYVLLSIREGCD--------PVNRLWYCDLQQESNGITGILKWVKLIDNFE-------------G 288 (710)
T ss_dssp TCTTCEEEEEECTTSCEEEEEEECSSS--------SCCEEEEEEGGGSSSSSCSSCCCEEEECSSS-------------S
T ss_pred CCCeEEEEEEEcCCCCEEEEEEEccCC--------CccEEEEEECcccccccCCccceEEeeCCCC-------------c
Confidence 335688999999999998854311 134899999986 4 4556554321 1
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCC---ceEEeeccc--ccCceeeccCCceEEEEEe
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG---PEILHKLDL--RYGGISWCDDSLALVYESW 475 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~---~~~l~~~~~--~~~~~~~spDg~~l~~~~~ 475 (954)
....|+|||+.++|..+.. .....|+++++ +++. .+.+..+.. .+..++|++++ .|++...
T Consensus 289 -~~~~~s~dg~~l~~~s~~~---------~~~~~l~~~d~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~ 354 (710)
T 2xdw_A 289 -EYDYVTNEGTVFTFKTNRH---------SPNYRLINIDF---TDPEESKWKVLVPEHEKDVLEWVACVRSN-FLVLCYL 354 (710)
T ss_dssp -CEEEEEEETTEEEEEECTT---------CTTCEEEEEET---TSCCGGGCEEEECCCSSCEEEEEEEETTT-EEEEEEE
T ss_pred -EEEEEeccCCEEEEEECCC---------CCCCEEEEEeC---CCCCcccceeccCCCCCCeEEEEEEEcCC-EEEEEEE
Confidence 1235999999988873321 22558999996 4443 356654432 46678898554 5555555
Q ss_pred ccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEE
Q 002194 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLD 555 (954)
Q Consensus 476 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 555 (954)
.++ ..+||++++.++. ....+. .+...+.+ ++++|||+.++|..... . ....||
T Consensus 355 ~~g-~~~l~~~~~~~g~-~~~~l~-~~~~~v~~------~~~s~d~~~l~~~~ss~--------------~---~P~~i~ 408 (710)
T 2xdw_A 355 HDV-KNTLQLHDLATGA-LLKIFP-LEVGSVVG------YSGQKKDTEIFYQFTSF--------------L---SPGIIY 408 (710)
T ss_dssp ETT-EEEEEEEETTTCC-EEEEEC-CCSSEEEE------EECCTTCSEEEEEEECS--------------S---CCCEEE
T ss_pred ECC-EEEEEEEECCCCC-EEEecC-CCCceEEE------EecCCCCCEEEEEEeCC--------------C---CCCEEE
Confidence 443 3789999985541 223332 22222222 66889998888876321 1 234599
Q ss_pred EEECCCCC--eEEEecc
Q 002194 556 LFDINTGS--KERIWES 570 (954)
Q Consensus 556 ~~d~~~g~--~~~l~~~ 570 (954)
+||+++++ .+.+...
T Consensus 409 ~~d~~tg~~~~~~l~~~ 425 (710)
T 2xdw_A 409 HCDLTKEELEPRVFREV 425 (710)
T ss_dssp EEETTSSSCCCEEEEEC
T ss_pred EEECCCCccceEEeeec
Confidence 99999988 6655543
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=212.98 Aligned_cols=251 Identities=14% Similarity=0.146 Sum_probs=174.8
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHH-HHHHHCCcEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV-LLWLARGFAI 715 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la~~G~~V 715 (954)
+..+.+++++.||.+|.+++|+|++. +++|+||++||...... .........|... .... +.|+++||+|
T Consensus 35 ~~~~~v~i~~~DG~~L~~~l~~P~~~-----~~~PvIl~~hpyg~~~~---~~~~~~~~~~~~~-~~~~~~~la~~GyaV 105 (652)
T 2b9v_A 35 YIKREVMVPMRDGVKLYTVIVIPKNA-----RNAPILLTRTPYNAKGR---ANRVPNALTMREV-LPQGDDVFVEGGYIR 105 (652)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTC-----CSEEEEEEEESSCHHHH---TCSSTTCSSHHHH-SCGGGHHHHHTTCEE
T ss_pred cEEEEEEEECCCCcEEEEEEEecCCC-----CCccEEEEECCCCCCcc---ccccccccccccc-ccchHHHHHhCCCEE
Confidence 45678899999999999999999762 35899999996321100 0000000000000 0012 6889999999
Q ss_pred EEcCCCCCCCCCCcccch-----hhH---HHHHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCcccE
Q 002194 716 LGGPTTPIIGEGDEEAND-----RFV---EQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (954)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~-----~~~---~~~~~D~~~av~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a 786 (954)
+..+++|..+.+..+... .+. ...++|+.++++||.++ +++| .||+++|+||||++++.++++.|+.|+|
T Consensus 106 v~~D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka 184 (652)
T 2b9v_A 106 VFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKV 184 (652)
T ss_dssp EEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEE
T ss_pred EEEecCcCCCCCCcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEE
Confidence 997777665544432211 122 26789999999999999 8877 5999999999999999999988899999
Q ss_pred EEEeccCCCCCC-CCC---CCcccc----------------------ch------------------------hhhc---
Q 002194 787 GIARSGAYNRTL-TPF---GFQNED----------------------RT------------------------LWEA--- 813 (954)
Q Consensus 787 ~v~~~~~~~~~~-~~~---~~~~~~----------------------~~------------------------~~~~--- 813 (954)
+|+.+++.|+.. ..+ +..... .. .|..
T Consensus 185 ~v~~~~~~d~~~~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (652)
T 2b9v_A 185 AAPESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHA 264 (652)
T ss_dssp EEEEEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHH
T ss_pred EEecccccccccccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHh
Confidence 999999988532 111 000000 00 0110
Q ss_pred ----HHHHHhcCcccccCC--CCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC--CcEEEEEeCCCCCcCCC------
Q 002194 814 ----TSTYVEMSPFMSANK--LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG--ALCRLVILPFESHGYAA------ 879 (954)
Q Consensus 814 ----~~~~~~~sp~~~~~~--~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~H~~~~------ 879 (954)
.+.|...||..++++ |++|+|++||..|.+ + ..++.++|++|+..+ +++++++.|. +|....
T Consensus 265 ~p~~d~yw~~~Sp~~~~~~~~I~~PvLiv~G~~D~~-~--~~~~~~~~~aL~~~g~~~~~~lvigp~-~H~~~~~~~~~~ 340 (652)
T 2b9v_A 265 HPAYDAFWQGQALDKILAQRKPTVPMLWEQGLWDQE-D--MWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTL 340 (652)
T ss_dssp CCSSSHHHHTTCHHHHHHHHCCCSCEEEEEETTCSS-C--SSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEE
T ss_pred CCCCChHHhcCChhhhhhcCCCCCCEEEEeecCCcc-c--cccHHHHHHHHHhcCCCCCCEEEECCC-CCCCcccccccC
Confidence 122455688888999 999999999999997 6 678999999999998 8899999997 797511
Q ss_pred -------cccHHHHHHHHHHHHHHhcccC
Q 002194 880 -------RESIMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 880 -------~~~~~~~~~~i~~fl~~~l~~~ 901 (954)
..+.....+.+++||++||+..
T Consensus 341 ~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 369 (652)
T 2b9v_A 341 GPLEFEGDTAHQYRRDVFRPFFDEYLKPG 369 (652)
T ss_dssp TTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred CccccccccchhhhhhHHHHHHHHHhCCC
Confidence 1112334678899999999864
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.7e-18 Score=200.55 Aligned_cols=345 Identities=12% Similarity=0.133 Sum_probs=224.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCcccccc--------ccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceee
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELAR--------PEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~ 181 (954)
.+..++|||||++|+....++...+++... ....+..+.+.+++......+....|.+|+.. + ...+.
T Consensus 223 ~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~--~--~~~~~ 298 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN--G--QLLQT 298 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--S--CEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC--C--cEEEE
Confidence 456789999999999887765544444332 23334556677766544434444678999973 2 33344
Q ss_pred eecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 182 lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
+.++ ...+...+|+|||+.|+.... ...|.+++.++.....+...... +..++|+|||+.|+..
T Consensus 299 ~~~h--~~~v~~~~~~~~~~~l~t~~~---------d~~i~~w~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~l~~~ 362 (577)
T 2ymu_A 299 LTGH--SSSVWGVAFSPDGQTIASASD---------DKTVKLWNRNGQHLQTLTGHSSS-----VWGVAFSPDGQTIASA 362 (577)
T ss_dssp ECCC--SSCEEEEEECTTSSEEEEEET---------TSCEEEEETTSCEEEEECCCSSC-----EEEEEECTTSSEEEEE
T ss_pred EecC--CCCeEEEEECCCCCEEEEEeC---------CCeEEEEeCCCCeeEEEeCCCCC-----EEEEEECCCCCEEEEE
Confidence 4432 246788899999999988652 34566667777766666543332 6688999999999876
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCC-ceeEcCCC-cccccccc
Q 002194 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEIGPP-AVYTSLDP 339 (954)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G-~~~~l~~~-~~~~~~~~ 339 (954)
. ....|.+++.++ ....+... ..+..++|
T Consensus 363 ~-------------------------------------------------~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~ 393 (577)
T 2ymu_A 363 S-------------------------------------------------DDKTVKLWNRNGQLLQTLTGHSSSVRGVAF 393 (577)
T ss_dssp E-------------------------------------------------TTSEEEEEETTCCEEEEEECCSSCEEEEEE
T ss_pred e-------------------------------------------------CCCEEEEEcCCCCEEEEecCCCCCeEEEEE
Confidence 1 112355556644 33444444 67788999
Q ss_pred CCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 340 SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
||||++|+..+.+ +.+.+|+.++...+.+..+. ..+..++|+||++.++..
T Consensus 394 s~dg~~l~~~~~d-------------~~v~~~~~~~~~~~~~~~~~-------------~~v~~~~~s~d~~~l~~~--- 444 (577)
T 2ymu_A 394 SPDGQTIASASDD-------------KTVKLWNRNGQLLQTLTGHS-------------SSVWGVAFSPDDQTIASA--- 444 (577)
T ss_dssp CTTSSCEEEEETT-------------SEEEEECTTCCEEEEEECCS-------------SCEEEEEECTTSSEEEEE---
T ss_pred CCCCCEEEEEeCC-------------CEEEEEeCCCCEEEEecCCC-------------CCeEEEEECCCCCEEEEE---
Confidence 9999999988743 37999998877666665432 334678999999977665
Q ss_pred ccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002194 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 499 (954)
+..+.|.+|+. ++.....+..+...+..++|+|||+.|+....+.. .+|| +.++ +.....
T Consensus 445 ----------~~d~~v~~w~~---~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~--i~iw--~~~~---~~~~~~ 504 (577)
T 2ymu_A 445 ----------SDDKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT--VKLW--NRNG---QLLQTL 504 (577)
T ss_dssp ----------ETTSEEEEEET---TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE--EEEE--ETTS---CEEEEE
T ss_pred ----------cCCCEEEEEEC---CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE--EEEE--cCCC---CEEEEE
Confidence 34557889985 66656667777778889999999999988765432 4444 5543 333333
Q ss_pred cCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCccccccee
Q 002194 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (954)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 579 (954)
..+...+.. ++|||||++|+.... ...|++||..+.....+....+. +
T Consensus 505 ~~h~~~v~~------l~~s~dg~~l~s~~~---------------------dg~v~lwd~~~~~~~~~~~h~~~-----v 552 (577)
T 2ymu_A 505 TGHSSSVRG------VAFSPDGQTIASASD---------------------DKTVKLWNRNGQLLQTLTGHSSS-----V 552 (577)
T ss_dssp ECCSSCEEE------EEECTTSSCEEEEET---------------------TSEEEEECTTSCEEEEEECCSSC-----E
T ss_pred eCCCCCEEE------EEEcCCCCEEEEEEC---------------------cCEEEEEeCCCCEEEEEcCCCCC-----E
Confidence 444444443 889999999887652 23589999765444444433321 2
Q ss_pred EEeccCCccccccccCCEEEEEEecCCCCceEEEEE
Q 002194 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQS 615 (954)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~ 615 (954)
.. .+|+|||++|+..... ..+++||
T Consensus 553 ~~-------~~fs~dg~~l~s~~~D----~~i~~Wd 577 (577)
T 2ymu_A 553 WG-------VAFSPDGQTIASASSD----KTVKLWN 577 (577)
T ss_dssp EE-------EEECTTSSCEEEEETT----SCEEEEC
T ss_pred EE-------EEEcCCCCEEEEEeCC----CEEEEeC
Confidence 22 4699999877643222 3366654
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-19 Score=190.10 Aligned_cols=202 Identities=17% Similarity=0.134 Sum_probs=142.9
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAAV 747 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av 747 (954)
.+.||++||... +...| ..++..|+++||.|++ .+.+|+|.+... .......++|+.+++
T Consensus 51 ~~~VlllHG~~~-----------s~~~~----~~la~~La~~Gy~Via---~Dl~GhG~S~~~~~~~~~~~~~~d~~~~~ 112 (281)
T 4fbl_A 51 RIGVLVSHGFTG-----------SPQSM----RFLAEGFARAGYTVAT---PRLTGHGTTPAEMAASTASDWTADIVAAM 112 (281)
T ss_dssp SEEEEEECCTTC-----------CGGGG----HHHHHHHHHTTCEEEE---CCCTTSSSCHHHHHTCCHHHHHHHHHHHH
T ss_pred CceEEEECCCCC-----------CHHHH----HHHHHHHHHCCCEEEE---ECCCCCCCCCccccCCCHHHHHHHHHHHH
Confidence 466889999521 11111 2467789999999999 677789988542 233456788999999
Q ss_pred HHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC-----------CCC-------Cccc---
Q 002194 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-----------PFG-------FQNE--- 806 (954)
Q Consensus 748 ~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-----------~~~-------~~~~--- 806 (954)
++|.+.. ++++|+||||||.+++.++.++|++++++|++++....... ... ...+
T Consensus 113 ~~l~~~~----~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (281)
T 4fbl_A 113 RWLEERC----DVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVK 188 (281)
T ss_dssp HHHHHHC----SEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCC
T ss_pred HHHHhCC----CeEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHH
Confidence 9997653 58999999999999999999999999999999986542110 000 0000
Q ss_pred -c---chhhhcHHHHHhc--CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCc
Q 002194 807 -D---RTLWEATSTYVEM--SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880 (954)
Q Consensus 807 -~---~~~~~~~~~~~~~--sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 880 (954)
. ...+.....+... .....+.++++|+||+||++|.+|| ++.++.+++++. +.+++++++|+++|.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~v~--~~~~~~l~~~l~--~~~~~l~~~~~~gH~~~~e 264 (281)
T 4fbl_A 189 ELAYPVTPVPAIKHLITIGAVAEMLLPRVKCPALIIQSREDHVVP--PHNGELIYNGIG--STEKELLWLENSYHVATLD 264 (281)
T ss_dssp CCCCSEEEGGGHHHHHHHHHHHHHHGGGCCSCEEEEEESSCSSSC--THHHHHHHHHCC--CSSEEEEEESSCCSCGGGS
T ss_pred HhhhccCchHHHHHHHHhhhhccccccccCCCEEEEEeCCCCCcC--HHHHHHHHHhCC--CCCcEEEEECCCCCcCccc
Confidence 0 0000111111000 0113456789999999999999999 999999988775 3468999999999987544
Q ss_pred ccHHHHHHHHHHHHHHh
Q 002194 881 ESIMHVLWETDRWLQKY 897 (954)
Q Consensus 881 ~~~~~~~~~i~~fl~~~ 897 (954)
.+.+.+.+.|.+||++|
T Consensus 265 ~~~e~v~~~i~~FL~~H 281 (281)
T 4fbl_A 265 NDKELILERSLAFIRKH 281 (281)
T ss_dssp TTHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 55778899999999986
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-19 Score=193.55 Aligned_cols=233 Identities=17% Similarity=0.182 Sum_probs=162.5
Q ss_pred CCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHC-CcE
Q 002194 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-GFA 714 (954)
Q Consensus 636 ~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G~~ 714 (954)
....+.+++++.+| ++.+++|.|++. .++.|+||++|||++..+. ...+ ...+..|+++ ||.
T Consensus 45 ~~~~~~~~i~~~~g-~l~~~~~~P~~~----~~~~p~vv~~HGGg~~~g~--------~~~~----~~~~~~la~~~g~~ 107 (310)
T 2hm7_A 45 VAEVREFDMDLPGR-TLKVRMYRPEGV----EPPYPALVYYHGGSWVVGD--------LETH----DPVCRVLAKDGRAV 107 (310)
T ss_dssp CSEEEEEEEEETTE-EEEEEEEECTTC----CSSEEEEEEECCSTTTSCC--------TTTT----HHHHHHHHHHHTSE
T ss_pred cceEEEEEeccCCC-eEEEEEEecCCC----CCCCCEEEEECCCccccCC--------hhHh----HHHHHHHHHhcCCE
Confidence 45678889998887 999999999753 2348999999998543221 1122 2456677775 999
Q ss_pred EEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhCCC----cccEE
Q 002194 715 ILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCG 787 (954)
Q Consensus 715 V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a~ 787 (954)
|+.++++ |.|.. .+....+|+.++++|+.++. .+|+++|+|+|||+||.+|+.++.+.|+ .++++
T Consensus 108 v~~~d~r---g~~~~-----~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~ 179 (310)
T 2hm7_A 108 VFSVDYR---LAPEH-----KFPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQ 179 (310)
T ss_dssp EEEECCC---CTTTS-----CTTHHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCE
T ss_pred EEEeCCC---CCCCC-----CCCccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEE
Confidence 9996665 44332 12456789999999998874 3678899999999999999999988765 69999
Q ss_pred EEeccCCCCC--CCCCCCccc-cchhhh--c----HHHH---------HhcCcccc--cCCCCCCEEEEEeCCCCCCCCc
Q 002194 788 IARSGAYNRT--LTPFGFQNE-DRTLWE--A----TSTY---------VEMSPFMS--ANKLKKPILLVHGEEDNNSGTL 847 (954)
Q Consensus 788 v~~~~~~~~~--~~~~~~~~~-~~~~~~--~----~~~~---------~~~sp~~~--~~~~~~P~Lii~G~~D~~v~~~ 847 (954)
|+++|..+.. .....+... ....+. . ...| ...+|... +..+ .|+||+||++|..
T Consensus 180 vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~-~P~lii~G~~D~~---- 254 (310)
T 2hm7_A 180 LLIYPSTGYDPAHPPASIEENAEGYLLTGGMMLWFRDQYLNSLEELTHPWFSPVLYPDLSGL-PPAYIATAQYDPL---- 254 (310)
T ss_dssp EEESCCCCCCTTSCCHHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTC-CCEEEEEEEECTT----
T ss_pred EEEcCCcCCCcccCCcchhhcCCCCCCCHHHHHHHHHHhCCCCCccCCccCCCCcCccccCC-CCEEEEEecCCCc----
Confidence 9999987754 110000000 000000 0 0001 01233321 2222 3999999999986
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCC----cccHHHHHHHHHHHHHHhc
Q 002194 848 TMQSDRFFNALKGHGALCRLVILPFESHGYAA----RESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 848 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~fl~~~l 898 (954)
..++..++++|+..|+++++++|++++|.+.. .+....+.+.+.+||++++
T Consensus 255 ~~~~~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 309 (310)
T 2hm7_A 255 RDVGKLYAEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 309 (310)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCEEEEEeCCCccchhhhcccChHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999998743 2345678899999999886
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.82 E-value=9.8e-19 Score=190.74 Aligned_cols=234 Identities=18% Similarity=0.130 Sum_probs=163.1
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCc
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGF 713 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~ 713 (954)
.....+.+++++.+| .+.+++|.|++ .++.|+||++|||.+..+. ...| ......|+. .||
T Consensus 61 ~~~~~~~~~i~~~~~-~i~~~iy~P~~-----~~~~p~vv~~HGGg~~~g~--------~~~~----~~~~~~La~~~g~ 122 (323)
T 3ain_A 61 EVGKIEDITIPGSET-NIKARVYYPKT-----QGPYGVLVYYHGGGFVLGD--------IESY----DPLCRAITNSCQC 122 (323)
T ss_dssp CCSEEEEEEEECSSS-EEEEEEEECSS-----CSCCCEEEEECCSTTTSCC--------TTTT----HHHHHHHHHHHTS
T ss_pred CccEEEEEEecCCCC-eEEEEEEecCC-----CCCCcEEEEECCCccccCC--------hHHH----HHHHHHHHHhcCC
Confidence 345678899988777 89999999975 2347999999998543221 1122 235566775 499
Q ss_pred EEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCC-C-CCCcEEEEeeChHHHHHHHHHHhCCCcc---cEEE
Q 002194 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGV-A-HPSKIAVGGHSYGAFMTANLLAHAPHLF---CCGI 788 (954)
Q Consensus 714 ~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~-~-d~~ri~l~G~S~GG~~a~~~a~~~p~~~---~a~v 788 (954)
.|+.++++ |.|.+. ++..++|+.++++|+.++.. . |+++|+|+|+|+||++|+.++.+.|++. +++|
T Consensus 123 ~Vv~~Dyr---g~~~~~-----~p~~~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~v 194 (323)
T 3ain_A 123 VTISVDYR---LAPENK-----FPAAVVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQV 194 (323)
T ss_dssp EEEEECCC---CTTTSC-----TTHHHHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEE
T ss_pred EEEEecCC---CCCCCC-----CcchHHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEE
Confidence 99996554 444432 24567899999999988631 1 7899999999999999999999887766 8999
Q ss_pred EeccCCCCCCCCCCCc--------ccc--chhhhc----H--HHHHhcCcccc-cCCCCCCEEEEEeCCCCCCCCchHHH
Q 002194 789 ARSGAYNRTLTPFGFQ--------NED--RTLWEA----T--STYVEMSPFMS-ANKLKKPILLVHGEEDNNSGTLTMQS 851 (954)
Q Consensus 789 ~~~~~~~~~~~~~~~~--------~~~--~~~~~~----~--~~~~~~sp~~~-~~~~~~P~Lii~G~~D~~v~~~~~~~ 851 (954)
+++|..+.......+. ... ...|.. . ......+|+.. +..+ .|+||++|+.|.. ..++
T Consensus 195 l~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~l-~P~lii~G~~D~l----~~~~ 269 (323)
T 3ain_A 195 LIYPAVSFDLITKSLYDNGEGFFLTREHIDWFGQQYLRSFADLLDFRFSPILADLNDL-PPALIITAEHDPL----RDQG 269 (323)
T ss_dssp EESCCCSCCSCCHHHHHHSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGSCCTTC-CCEEEEEETTCTT----HHHH
T ss_pred EEeccccCCCCCccHHHhccCCCCCHHHHHHHHHHhCCCCcccCCcccCcccCcccCC-CHHHEEECCCCcc----HHHH
Confidence 9999876432210000 000 000000 0 00011234332 1222 4999999999986 4678
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCC----cccHHHHHHHHHHHHHHhcc
Q 002194 852 DRFFNALKGHGALCRLVILPFESHGYAA----RESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~fl~~~l~ 899 (954)
..++++|+..|+++++++|++++|.+.. .+....+.+.+.+||++++.
T Consensus 270 ~~~a~~l~~ag~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 321 (323)
T 3ain_A 270 EAYANKLLQSGVQVTSVGFNNVIHGFVSFFPFIEQGRDAIGLIGYVLRKVFY 321 (323)
T ss_dssp HHHHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEECCCccccccccCcCHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999753 23457888999999999874
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-18 Score=208.45 Aligned_cols=317 Identities=14% Similarity=0.090 Sum_probs=201.2
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCC
Q 002194 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (954)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~ 188 (954)
..+..++||+| .++|+..+ +..+.. ..||++ . .+ +..++|+...
T Consensus 24 ~~~~~~~~s~~--~~~~~~~~---------------------~~~~~~------~~l~~~-~--~~--~~~~~l~~~~-- 67 (662)
T 3azo_A 24 GRPACVGAVGD--EVWWVAPR---------------------PAEAGR------ATLVRR-R--AD--GAEESALPAP-- 67 (662)
T ss_dssp SCCEEEEEETT--EEEEEEEE---------------------TTTTTE------EEEEEE-C--TT--SCEEESSCTT--
T ss_pred CccceeEEcCC--eEEEEecC---------------------cccCCc------EEEEEE-C--CC--CCcceeCCCC--
Confidence 46778889865 68887652 111111 255654 2 22 5566775432
Q ss_pred Cccc---------ceeec--CCCCe-EEEEEeeccccCCCCceEEEEEECC--C-CceeecccCCCccccccccceeEec
Q 002194 189 AKLN---------FVTWS--QDGKH-LAFSIRIDAEDSSSSKLRVWVADVD--T-GKARPLFQSPDIYLNAIFDNFVWVN 253 (954)
Q Consensus 189 ~~~~---------~~~wS--PDG~~-iaf~~~~~~~~~~~~~~~l~~~d~~--~-g~~~~lt~~~~~~~~~~~~~~~wsp 253 (954)
..+. .+.|| |||++ |+|+.. ...+||+++++ + ++.++++..+.......+..++|||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~--------~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp 139 (662)
T 3azo_A 68 WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF--------GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP 139 (662)
T ss_dssp CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT--------TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET
T ss_pred ccccccccccCCccceeeeecCCCeEEEEEEC--------CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC
Confidence 2333 56676 99999 999753 25789999998 6 8888998743110011156899999
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C------Ccee
Q 002194 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D------GTVK 326 (954)
Q Consensus 254 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~------G~~~ 326 (954)
||+.|+++....... .+ ..+..+||++++ + |+.+
T Consensus 140 Dg~~l~~~~~~~~~~--------------------------------~~-------~~~~~~i~~~~~~~~~~~~~~~~~ 180 (662)
T 3azo_A 140 ERGEVWCMAEEFTGE--------------------------------GP-------SDVRRFLAAVPLDGSAAADRSAVR 180 (662)
T ss_dssp TTTEEEEEEEEECSS--------------------------------ST-------TCEEEEEEEEETTSTTTTCGGGSE
T ss_pred CCCEEEEEEecccCC--------------------------------CC-------CCceeEEEEEECCCCccccCCcee
Confidence 999999883211000 00 003467999999 6 7888
Q ss_pred EcC-CC-ccccccccCCCCcEEEEEeecCCcccccccCCC-CcceEEEecc-Cc---eEEEeccCCCcccCCcccccccc
Q 002194 327 EIG-PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRF-PRQVGVWTTD-GI---FVRELCDLPLAEDIPIAFNSVRK 399 (954)
Q Consensus 327 ~l~-~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~-~~~l~l~d~~-g~---~~~~l~~~~~~~~~p~~~~~~~~ 399 (954)
+++ .. ..+..++|||||++|+|.+...+.. .+ ..+|++||++ ++ +.+.++... ..
T Consensus 181 ~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~------~~~~~~i~~~d~~~~g~~~~~~~l~~~~------------~~ 242 (662)
T 3azo_A 181 ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRM------PWEGTELKTARVTEDGRFADTRTLLGGP------------EE 242 (662)
T ss_dssp ESSCSCSSEECCCEECTTSSEEEEEEECTTCC------TTTCEEEEEEEECTTSCEEEEEEEEEET------------TB
T ss_pred EEEecCCCcccCceECCCCCEEEEEECCCCCC------CCCCcEEEEEEECCCCcccccEEeCCCC------------Cc
Confidence 888 65 6778899999999999988554210 11 2489999998 45 556665421 12
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeeccccc---------CceeeccCCceE
Q 002194 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRY---------GGISWCDDSLAL 470 (954)
Q Consensus 400 g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~---------~~~~~spDg~~l 470 (954)
.+..++|||||+ ++|..+. ++...||++++ ++++.++++...... ..++|+|||+.+
T Consensus 243 ~~~~~~~spdg~-l~~~~~~----------~~~~~l~~~~~---~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~ 308 (662)
T 3azo_A 243 AIAQAEWAPDGS-LIVATDR----------TGWWNLHRVDP---ATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIA 308 (662)
T ss_dssp CEEEEEECTTSC-EEEEECT----------TSSCEEEEECT---TTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEE
T ss_pred eEcceEECCCCe-EEEEECC----------CCCeEEEEEEC---CCCceeecccccccccCccccccCceEeEeCCCEEE
Confidence 345789999999 6665221 12347999985 567777776554443 345666777755
Q ss_pred EEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeee-ccCCcEEEEEEeeccCCCcEEEEecCCCCCCC
Q 002194 471 VYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRR-TSTGTYVIAKIKKENDEGTYILLNGNGATPEG 549 (954)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (954)
+.. .. + ..+||.++++++ +.+.++.. ...+ ..+ ++||+.++|..... .
T Consensus 309 ~~~-~~-~-~~~l~~~d~~~~--~~~~l~~~-~~~~--------~~~~s~~~~~~~~~~~~~-----------------~ 357 (662)
T 3azo_A 309 VVH-GK-G-AAVLGILDPESG--ELVDAAGP-WTEW--------AATLTVSGTRAVGVAASP-----------------R 357 (662)
T ss_dssp EEE-BS-S-SCEEEEEETTTT--EEEECCSS-CCEE--------EEEEEEETTEEEEEEEET-----------------T
T ss_pred EEE-Ec-C-ccEEEEEECCCC--cEEEecCC-CCeE--------EEEEecCCCEEEEEEcCC-----------------C
Confidence 444 44 3 478999999875 33444322 1111 123 78888887776322 1
Q ss_pred CCCeEEEEECCCCCeEEEeccC
Q 002194 550 NIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 550 ~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
....||++|+++++.++|+...
T Consensus 358 ~~~~i~~~d~~~g~~~~l~~~~ 379 (662)
T 3azo_A 358 TAYEVVELDTVTGRARTIGARH 379 (662)
T ss_dssp EEEEEEEEETTTCCEEEEESCC
T ss_pred CCCEEEEEECCCCceEEeecCC
Confidence 2346999999999999887655
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=192.80 Aligned_cols=238 Identities=16% Similarity=0.123 Sum_probs=161.2
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCCC------------CCCCCccEEEEECCCCCcCcccCccccCCCCCCCCccc
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDP------------SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS 702 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~------------~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~ 702 (954)
..+..+.+.+.. +..+.+.+|+|++... ...++.|+||++|||.+..+... . ....
T Consensus 68 ~~v~~~dv~~~~--~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~--------~--~~~~ 135 (351)
T 2zsh_A 68 DGVFSFDVLIDR--RINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSAN--------S--AIYD 135 (351)
T ss_dssp TTEEEEEEEEET--TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTT--------B--HHHH
T ss_pred CCceEEEEEecC--CCCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCCc--------c--hhHH
Confidence 345566777765 4557888999976420 11245899999999864332111 1 0012
Q ss_pred HHHHHHH-HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC----CCCCC-cEEEEeeChHHHHHHHH
Q 002194 703 TSVLLWL-ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG----VAHPS-KIAVGGHSYGAFMTANL 776 (954)
Q Consensus 703 ~~~~~la-~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~----~~d~~-ri~l~G~S~GG~~a~~~ 776 (954)
.++..|+ ++||.|+..++++. +.. .....++|+.++++|+.++. .+|++ +|+|+|||+||++|+.+
T Consensus 136 ~~~~~la~~~g~~vv~~d~rg~---~~~-----~~~~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~ 207 (351)
T 2zsh_A 136 TLCRRLVGLCKCVVVSVNYRRA---PEN-----PYPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNV 207 (351)
T ss_dssp HHHHHHHHHHTSEEEEECCCCT---TTS-----CTTHHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEecCCCC---CCC-----CCchhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHH
Confidence 3556777 78999999766543 222 22456789999999999864 47899 99999999999999999
Q ss_pred HHhCCC---cccEEEEeccCCCCCCCCCC--------Cccc--cchhhhcH------HHHHhcCcc----cccCCCCC-C
Q 002194 777 LAHAPH---LFCCGIARSGAYNRTLTPFG--------FQNE--DRTLWEAT------STYVEMSPF----MSANKLKK-P 832 (954)
Q Consensus 777 a~~~p~---~~~a~v~~~~~~~~~~~~~~--------~~~~--~~~~~~~~------~~~~~~sp~----~~~~~~~~-P 832 (954)
+.+.|+ +++++|+++|.++....... +... ....|... ......+|+ ..+.++++ |
T Consensus 208 a~~~~~~~~~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~pP 287 (351)
T 2zsh_A 208 ALRAGESGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPK 287 (351)
T ss_dssp HHHHHTTTCCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTSCCCTTCCCCE
T ss_pred HHHhhccCCCeeEEEEECCccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCccchhhCCCCC
Confidence 999887 89999999998763321100 0000 00001000 000011222 23444555 9
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCC---cccHHHHHHHHHHHHHH
Q 002194 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA---RESIMHVLWETDRWLQK 896 (954)
Q Consensus 833 ~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~---~~~~~~~~~~i~~fl~~ 896 (954)
+||+||++|.++ .++.+++++|+..+.+++++++++++|.+.. .+....+.+.+.+||++
T Consensus 288 ~Lii~G~~D~~~----~~~~~~~~~l~~~g~~~~~~~~~g~gH~~~~~~~~~~~~~~~~~i~~Fl~~ 350 (351)
T 2zsh_A 288 SLVVVAGLDLIR----DWQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNA 350 (351)
T ss_dssp EEEEEETTSTTH----HHHHHHHHHHHHTTCCEEEEEETTCCTTTTSSSCSHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCCcch----HHHHHHHHHHHHcCCCEEEEEECCCcEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 999999999874 4678899999999999999999999998854 25567788899999875
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-19 Score=192.97 Aligned_cols=237 Identities=21% Similarity=0.188 Sum_probs=164.4
Q ss_pred CCCceEEEEEEcCCCe-EEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CC
Q 002194 635 ASLQKELIKYQRKDGV-QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RG 712 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~-~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G 712 (954)
..+..+.+++++.+|. .+.+++|.|++. .++.|+||++|||.+..+.. ..+ ......|++ .|
T Consensus 47 ~~~~~~~~~i~~~~g~~~l~~~~~~P~~~----~~~~p~vv~~HGgg~~~g~~--------~~~----~~~~~~la~~~G 110 (323)
T 1lzl_A 47 DGVSLRELSAPGLDGDPEVKIRFVTPDNT----AGPVPVLLWIHGGGFAIGTA--------ESS----DPFCVEVARELG 110 (323)
T ss_dssp TTEEEEEEEECCSTTCCCEEEEEEEESSC----CSCEEEEEEECCSTTTSCCG--------GGG----HHHHHHHHHHHC
T ss_pred CCceEEEEEecCCCCCceeEEEEEecCCC----CCCCcEEEEECCCccccCCh--------hhh----HHHHHHHHHhcC
Confidence 3456788999998887 899999999741 23589999999986432211 111 234556776 59
Q ss_pred cEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhCCC----ccc
Q 002194 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFC 785 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~ 785 (954)
|.|+.+++ +|+|.+. ++...+|+.++++|+.++ ..+|+++|+|+|+|+||++|+.++.+.++ .++
T Consensus 111 ~~Vv~~d~---rg~~~~~-----~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~ 182 (323)
T 1lzl_A 111 FAVANVEY---RLAPETT-----FPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVA 182 (323)
T ss_dssp CEEEEECC---CCTTTSC-----TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCC
T ss_pred cEEEEecC---CCCCCCC-----CCchHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCee
Confidence 99999555 4555442 234578899999999874 24788899999999999999999988654 499
Q ss_pred EEEEeccCCCCCCCCCCCcc-ccchhhhc------HHHHH--------------hcCcccccCCCC--CCEEEEEeCCCC
Q 002194 786 CGIARSGAYNRTLTPFGFQN-EDRTLWEA------TSTYV--------------EMSPFMSANKLK--KPILLVHGEEDN 842 (954)
Q Consensus 786 a~v~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~--------------~~sp~~~~~~~~--~P~Lii~G~~D~ 842 (954)
++|+++|..+.......+.. .....|.. ...|. ..+|... ..+. +|+||+||++|.
T Consensus 183 ~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~~~~~~~P~li~~G~~D~ 261 (323)
T 1lzl_A 183 FQFLEIPELDDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRA-TDLTGLPPTYLSTMELDP 261 (323)
T ss_dssp EEEEESCCCCTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGC-SCCTTCCCEEEEEETTCT
T ss_pred EEEEECCccCCCcCchhHHHhccCCCCCHHHHHHHHHHhCCCCcccccccCCCcccCcccC-cccCCCChhheEECCcCC
Confidence 99999998775432100000 00000000 01111 1123221 1232 699999999998
Q ss_pred CCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCc---ccHHHHHHHHHHHHHHhccc
Q 002194 843 NSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR---ESIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 843 ~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~---~~~~~~~~~i~~fl~~~l~~ 900 (954)
. ..++.+++++|+..|+++++++||+++|.+... +....+++.+.+||++++..
T Consensus 262 ~----~~~~~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 318 (323)
T 1lzl_A 262 L----RDEGIEYALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLRS 318 (323)
T ss_dssp T----HHHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTCC
T ss_pred c----hHHHHHHHHHHHHcCCCEEEEEeCcCccCcccCccCHHHHHHHHHHHHHHHHHhcc
Confidence 6 467889999999999999999999999986422 23567889999999999853
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.9e-18 Score=204.38 Aligned_cols=330 Identities=13% Similarity=0.051 Sum_probs=203.8
Q ss_pred hhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCce
Q 002194 100 PEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE 179 (954)
Q Consensus 100 ~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~ 179 (954)
.++.+++.....+ ..+|||++++|...+ .+... ..||+.+.. + +..
T Consensus 61 ~~~~~~~~~~~~~--~p~~dG~~~~~~~~~----------------------~~~~~------~~l~~~~~~--~--~~~ 106 (695)
T 2bkl_A 61 ARFKELFYTDSVS--TPSRRNGRFFYVRTH----------------------KDKEK------AILYWRQGE--S--GQE 106 (695)
T ss_dssp HHHHHHHSCCEEC--CCEEETTEEEEEEEC----------------------TTCSS------CEEEEEEST--T--SCC
T ss_pred HHHHHhhccccCC--CCEEECCEEEEEEEc----------------------CCCeE------EEEEEEcCC--C--CCc
Confidence 3455666654433 445999999999875 11111 367887753 3 555
Q ss_pred eeeecCC---CC--CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecC
Q 002194 180 IEIQGFP---DG--AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN 254 (954)
Q Consensus 180 ~~lt~~~---~~--~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD 254 (954)
++|+... .+ ..+..++|||||++|||+.+.. +++..+|+++|+++|+..+........ ...++||||
T Consensus 107 ~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~----G~~~~~i~v~dl~tg~~~~~~~~~~~~----~~~~~wspD 178 (695)
T 2bkl_A 107 KVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPN----AADEAVLHVIDVDSGEWSKVDVIEGGK----YATPKWTPD 178 (695)
T ss_dssp EEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEET----TCSCCEEEEEETTTCCBCSSCCBSCCT----TCCCEECTT
T ss_pred EEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCC----CCceEEEEEEECCCCCCcCCcccCccc----ccceEEecC
Confidence 6665311 11 1577899999999999998643 555689999999999865121112111 258999999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc--eeEcCCC
Q 002194 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGPP 331 (954)
Q Consensus 255 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~--~~~l~~~ 331 (954)
|+.|+|+.....+. +.. . + .....+||++++ ++. .+.+...
T Consensus 179 g~~l~~~~~d~~~~---------~~~-------------------~---~-----~~~~~~v~~~~l~t~~~~~~lv~~~ 222 (695)
T 2bkl_A 179 SKGFYYEWLPTDPS---------IKV-------------------D---E-----RPGYTTIRYHTLGTEPSKDTVVHER 222 (695)
T ss_dssp SSEEEEEECCCCTT---------SCG-------------------G---G-----GGGGCEEEEEETTSCGGGCEEEECC
T ss_pred CCEEEEEEecCCCC---------Ccc-------------------c---c-----CCCCCEEEEEECCCCchhceEEEec
Confidence 99999984322111 000 0 0 003457999999 664 2344332
Q ss_pred ----ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeec
Q 002194 332 ----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (954)
Q Consensus 332 ----~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~ws 407 (954)
..+.++.|||||++|++.+..... ..++++++..+++.+.+..... +...+.|
T Consensus 223 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~---------~~~l~~~~~~~~~~~~l~~~~~-------------~~~~~~~- 279 (695)
T 2bkl_A 223 TGDPTTFLQSDLSRDGKYLFVYILRGWS---------ENDVYWKRPGEKDFRLLVKGVG-------------AKYEVHA- 279 (695)
T ss_dssp CCCTTCEEEEEECTTSCCEEEEEEETTT---------EEEEEEECTTCSSCEEEEECSS-------------CCEEEEE-
T ss_pred CCCCEEEEEEEECCCCCEEEEEEeCCCC---------ceEEEEEcCCCCceEEeecCCC-------------ceEEEEe-
Confidence 356689999999999998865411 2378888876666777665321 2234456
Q ss_pred cCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc---eEEeec--ccccCceeeccCCceEEEEEeccccceE
Q 002194 408 SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKL--DLRYGGISWCDDSLALVYESWYKTRRTR 482 (954)
Q Consensus 408 pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~---~~l~~~--~~~~~~~~~spDg~~l~~~~~~~~~~~~ 482 (954)
+||+ +++..+.. .....|+++++ ++++. +.+... ...+..++|+ + ..|++....++ ..+
T Consensus 280 ~~g~-l~~~s~~~---------~~~~~l~~~d~---~~~~~~~~~~l~~~~~~~~l~~~~~~-~-~~lv~~~~~dg-~~~ 343 (695)
T 2bkl_A 280 WKDR-FYVLTDEG---------APRQRVFEVDP---AKPARASWKEIVPEDSSASLLSVSIV-G-GHLSLEYLKDA-TSE 343 (695)
T ss_dssp ETTE-EEEEECTT---------CTTCEEEEEBT---TBCSGGGCEEEECCCSSCEEEEEEEE-T-TEEEEEEEETT-EEE
T ss_pred cCCc-EEEEECCC---------CCCCEEEEEeC---CCCCccCCeEEecCCCCCeEEEEEEE-C-CEEEEEEEECC-EEE
Confidence 7888 66653211 23568999986 44442 556543 3446677887 4 45666555544 378
Q ss_pred EEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCC
Q 002194 483 TWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTG 562 (954)
Q Consensus 483 l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 562 (954)
||+++++++ ....+.-.....+.+ ++++|||+.++|..... .....||+||++++
T Consensus 344 l~~~~~~g~--~~~~l~~~~~~~v~~------~~~s~d~~~l~~~~ss~-----------------~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 344 VRVATLKGK--PVRTVQLPGVGAASN------LMGLEDLDDAYYVFTSF-----------------TTPRQIYKTSVSTG 398 (695)
T ss_dssp EEEEETTCC--EEEECCCSSSSEECC------CBSCTTCSEEEEEEEET-----------------TEEEEEEEEETTTC
T ss_pred EEEEeCCCC--eeEEecCCCCeEEEE------eecCCCCCEEEEEEcCC-----------------CCCCEEEEEECCCC
Confidence 999998653 222232111122222 66899999998887432 12345999999999
Q ss_pred CeEEEeccC
Q 002194 563 SKERIWESD 571 (954)
Q Consensus 563 ~~~~l~~~~ 571 (954)
+.+.+....
T Consensus 399 ~~~~l~~~~ 407 (695)
T 2bkl_A 399 KSELWAKVD 407 (695)
T ss_dssp CEEEEEECC
T ss_pred cEEEEecCC
Confidence 988776544
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-19 Score=191.59 Aligned_cols=230 Identities=16% Similarity=0.121 Sum_probs=153.3
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAI 715 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V 715 (954)
...+.+++ +|..+ |+|++- .. ..|+||++|||.+..+.. .. ....+..|++ .||.|
T Consensus 58 ~~~~~~~~---~g~~~----~~p~~~--~~--~~~~vv~~HGgg~~~g~~--------~~----~~~~~~~la~~~g~~v 114 (322)
T 3k6k_A 58 VELTLTDL---GGVPC----IRQATD--GA--GAAHILYFHGGGYISGSP--------ST----HLVLTTQLAKQSSATL 114 (322)
T ss_dssp CEEEEEEE---TTEEE----EEEECT--TC--CSCEEEEECCSTTTSCCH--------HH----HHHHHHHHHHHHTCEE
T ss_pred ceEEEEEE---CCEeE----EecCCC--CC--CCeEEEEEcCCcccCCCh--------HH----HHHHHHHHHHhcCCEE
Confidence 33444444 67555 466541 11 245599999985432211 01 1134455665 49999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc----ccEEEEec
Q 002194 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL----FCCGIARS 791 (954)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~ 791 (954)
+.++++.. +.. .++..++|+.++++||.++ .+|+++|+|+|+|+||++|+.++.+.++. ++++|+++
T Consensus 115 ~~~dyr~~---~~~-----~~~~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~ 185 (322)
T 3k6k_A 115 WSLDYRLA---PEN-----PFPAAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLS 185 (322)
T ss_dssp EEECCCCT---TTS-----CTTHHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEES
T ss_pred EEeeCCCC---CCC-----CCchHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 99777543 222 2345678999999999988 46889999999999999999999887654 99999999
Q ss_pred cCCCCCCCCCCCccc-cchhh-------hcHHHHH--------hcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHH
Q 002194 792 GAYNRTLTPFGFQNE-DRTLW-------EATSTYV--------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (954)
Q Consensus 792 ~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~--------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (954)
|+++.......+... ....+ .....|. ..+|+....+...|+||+||++|.+ ..++.+++
T Consensus 186 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~G~~D~~----~~~~~~~~ 261 (322)
T 3k6k_A 186 PFVDLTLSRWSNSNLADRDFLAEPDTLGEMSELYVGGEDRKNPLISPVYADLSGLPEMLIHVGSEEAL----LSDSTTLA 261 (322)
T ss_dssp CCCCTTCCSHHHHHTGGGCSSSCHHHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEESSCTT----HHHHHHHH
T ss_pred CCcCcccCccchhhccCCCCcCCHHHHHHHHHHhcCCCCCCCCcCCcccccccCCCcEEEEECCcCcc----HHHHHHHH
Confidence 988754322111000 00000 0001111 1244443333447999999999976 57899999
Q ss_pred HHHHhCCCcEEEEEeCCCCCcCCC----cccHHHHHHHHHHHHHHhcccCC
Q 002194 856 NALKGHGALCRLVILPFESHGYAA----RESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 856 ~~l~~~g~~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
++|+..|+++++++||+++|.+.. .+....+++.+.+||++++....
T Consensus 262 ~~l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~~ 312 (322)
T 3k6k_A 262 ERAGAAGVSVELKIWPDMPHVFQMYGKFVNAADISIKEICHWISARISKLA 312 (322)
T ss_dssp HHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHCCCCEEEEEECCCccccccccccChHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999998743 23467888999999999986543
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-18 Score=181.16 Aligned_cols=225 Identities=12% Similarity=0.115 Sum_probs=153.9
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEc
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (954)
....++.+.||.++++++|.|++ +++.|+||++||+++..+. .. .+.......+++. |.|+.+
T Consensus 3 ~~~~~~~~~dg~~l~~~~~~p~~-----~~~~~~vv~~HG~~~~~~~--------~~---~~~~~~~~~l~~~-~~v~~~ 65 (275)
T 3h04_A 3 EIKYKVITKDAFALPYTIIKAKN-----QPTKGVIVYIHGGGLMFGK--------AN---DLSPQYIDILTEH-YDLIQL 65 (275)
T ss_dssp CEEEEEECTTSCEEEEEEECCSS-----SSCSEEEEEECCSTTTSCC--------TT---CSCHHHHHHHTTT-EEEEEE
T ss_pred ceEEEEecCCcEEEEEEEEccCC-----CCCCCEEEEEECCcccCCc--------hh---hhHHHHHHHHHhC-ceEEee
Confidence 45677888999999999999864 2347999999997532221 11 1122345555555 999995
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC
Q 002194 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (954)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (954)
+++ |.|.. .....++|+.++++++.++ .+.++++|+||||||.+++.++.+ ++++++|+++|..+...
T Consensus 66 d~~---~~~~~-----~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~~~~~~~ 133 (275)
T 3h04_A 66 SYR---LLPEV-----SLDCIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYGYSRINT 133 (275)
T ss_dssp CCC---CTTTS-----CHHHHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESCCSCSCS
T ss_pred ccc---cCCcc-----ccchhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEeccccccccc
Confidence 554 54433 2356788999999999887 567899999999999999999998 78999999999876421
Q ss_pred CCCC------------C-----------cc-ccchhhhcHHH-------------HH-------hcC-cccccCCCCCCE
Q 002194 799 TPFG------------F-----------QN-EDRTLWEATST-------------YV-------EMS-PFMSANKLKKPI 833 (954)
Q Consensus 799 ~~~~------------~-----------~~-~~~~~~~~~~~-------------~~-------~~s-p~~~~~~~~~P~ 833 (954)
.... . .. ........... +. .+. ....+.+++ |+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~ 212 (275)
T 3h04_A 134 EPFKTTNSYYAKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLP-PV 212 (275)
T ss_dssp HHHHSCCHHHHHHHTTSCHHHHHTTSCSSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTTCC-CE
T ss_pred cccccccchhhcccccchHHHHhcccCCCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhccCC-CE
Confidence 1000 0 00 00000000000 00 000 011225667 99
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccH--HHHHHHHHHHHHHhcc
Q 002194 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI--MHVLWETDRWLQKYCV 899 (954)
Q Consensus 834 Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~--~~~~~~i~~fl~~~l~ 899 (954)
|++||++|..+| +.++.++++.+. +.+++++++++|.+...... .++.+.+.+||++++.
T Consensus 213 lii~G~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 274 (275)
T 3h04_A 213 FIAHCNGDYDVP--VEESEHIMNHVP----HSTFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAITM 274 (275)
T ss_dssp EEEEETTCSSSC--THHHHHHHTTCS----SEEEEEECSSCSCTTSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCCCCCC--hHHHHHHHHhcC----CceEEEeCCCCCCcccCCchhHHHHHHHHHHHHHHHhc
Confidence 999999999998 888888876543 46899999999998655443 7889999999999873
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.80 E-value=8e-20 Score=195.87 Aligned_cols=236 Identities=13% Similarity=0.125 Sum_probs=152.7
Q ss_pred eEEEEEEc-CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 639 KELIKYQR-KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 639 ~~~~~~~~-~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
.+.+++.+ ..|.++.+.+|+|++++ ++++|+||++||+...... |... ......+++.||+|+.
T Consensus 22 ~~~~~~~s~~~~~~~~~~v~~P~~~~---~~~~p~vv~lHG~~~~~~~-----------~~~~-~~~~~~~~~~g~~vv~ 86 (283)
T 4b6g_A 22 QQVWAHHAQTLQCEMKFAVYLPNNPE---NRPLGVIYWLSGLTCTEQN-----------FITK-SGFQRYAAEHQVIVVA 86 (283)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCTT---CCCEEEEEEECCTTCCSHH-----------HHHH-SCTHHHHHHHTCEEEE
T ss_pred EEEEEEechhhCCceEEEEEeCCCCC---CCCCCEEEEEcCCCCCccc-----------hhhc-ccHHHHHhhCCeEEEE
Confidence 44555554 46889999999999865 2359999999997432111 1000 0124556778999999
Q ss_pred cCCC--CCC---------CCCCccc---c-------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHH
Q 002194 718 GPTT--PII---------GEGDEEA---N-------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (954)
Q Consensus 718 ~~~~--~~~---------G~G~~~~---~-------~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~ 776 (954)
++.. +.. |.|.++. . ..+.....+|+... +.+.. .++++++|+|+||||++|+.+
T Consensus 87 ~d~~~rg~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~-~~~~~~~l~G~S~GG~~a~~~ 162 (283)
T 4b6g_A 87 PDTSPRGEQVPNDDAYDLGQSAGFYLNATEQPWAANYQMYDYILNELPRL---IEKHF-PTNGKRSIMGHSMGGHGALVL 162 (283)
T ss_dssp ECSSCCSTTSCCCSSTTSBTTBCTTSBCCSTTGGGTCBHHHHHHTHHHHH---HHHHS-CEEEEEEEEEETHHHHHHHHH
T ss_pred eccccccccccccccccccCCCcccccCccCcccchhhHHHHHHHHHHHH---HHHhC-CCCCCeEEEEEChhHHHHHHH
Confidence 6632 111 2222211 0 01123333444444 33332 246799999999999999999
Q ss_pred HHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCC--CCEEEEEeCCCCCCCCchH-HHHH
Q 002194 777 LAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLK--KPILLVHGEEDNNSGTLTM-QSDR 853 (954)
Q Consensus 777 a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~--~P~Lii~G~~D~~v~~~~~-~~~~ 853 (954)
+.++|++|+++++++|+++....++...............+...+|...+.+++ .|+||+||+.|.+++ .. ++++
T Consensus 163 a~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~ 240 (283)
T 4b6g_A 163 ALRNQERYQSVSAFSPILSPSLVPWGEKAFTAYLGKDREKWQQYDANSLIQQGYKVQGMRIDQGLEDEFLP--TQLRTED 240 (283)
T ss_dssp HHHHGGGCSCEEEESCCCCGGGSHHHHHHHHHHHCSCGGGGGGGCHHHHHHHTCCCSCCEEEEETTCTTHH--HHTCHHH
T ss_pred HHhCCccceeEEEECCccccccCcchhhhHHhhcCCchHHHHhcCHHHHHHhcccCCCEEEEecCCCccCc--chhhHHH
Confidence 999999999999999987643221110000000011122334455655555443 499999999999976 42 2899
Q ss_pred HHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
++++|+..|++++++++|+++|.+. .....+..+++|+.++|
T Consensus 241 ~~~~l~~~g~~~~~~~~~g~~H~~~---~~~~~l~~~l~~~~~~l 282 (283)
T 4b6g_A 241 FIETCRAANQPVDVRFHKGYDHSYY---FIASFIGEHIAYHAAFL 282 (283)
T ss_dssp HHHHHHHHTCCCEEEEETTCCSSHH---HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCceEEEeCCCCcCHh---HHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999863 23456778889998876
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-20 Score=199.72 Aligned_cols=209 Identities=16% Similarity=0.157 Sum_probs=148.8
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEc
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (954)
...+.|. +..+...+|+|++. .++.|+||++|||++..+... .+ ...+..|+++||+|+.+
T Consensus 58 ~~~i~y~---~~~~~~~~~~p~~~----~~~~p~vv~~HGgg~~~~~~~--------~~----~~~~~~l~~~G~~v~~~ 118 (303)
T 4e15_A 58 VDHLRYG---EGRQLVDVFYSEKT----TNQAPLFVFVHGGYWQEMDMS--------MS----CSIVGPLVRRGYRVAVM 118 (303)
T ss_dssp EEEEECS---STTCEEEEEECTTC----CTTCCEEEEECCSTTTSCCGG--------GS----CTTHHHHHHTTCEEEEE
T ss_pred eeeeccC---CCCcEEEEEecCCC----CCCCCEEEEECCCcCcCCChh--------HH----HHHHHHHHhCCCEEEEe
Confidence 4455555 33456778888641 235899999999864432211 11 12466788999999996
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCC-------cccEEEEe
Q 002194 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPH-------LFCCGIAR 790 (954)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-------~~~a~v~~ 790 (954)
++++ .|.. .....+.|+.++++++.+. ...++++|+|+|||+||++++.++.+.+. +++++|++
T Consensus 119 d~r~---~~~~-----~~~~~~~d~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~ 190 (303)
T 4e15_A 119 DYNL---CPQV-----TLEQLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFL 190 (303)
T ss_dssp CCCC---TTTS-----CHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEE
T ss_pred cCCC---CCCC-----ChhHHHHHHHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEE
Confidence 6643 3332 2456788999999999874 33567899999999999999999986532 79999999
Q ss_pred ccCCCCCCCCCCC-ccccchhhhcHHHHHhcCcc-cccCCC----CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc
Q 002194 791 SGAYNRTLTPFGF-QNEDRTLWEATSTYVEMSPF-MSANKL----KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (954)
Q Consensus 791 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sp~-~~~~~~----~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (954)
+|+++........ ...........+.+...+|+ ..+.++ .+|+||+||++|..|+ ..++++++++|+..|.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~P~lii~G~~D~~v~--~~~~~~~~~~l~~~g~~ 268 (303)
T 4e15_A 191 CGVYDLRELSNLESVNPKNILGLNERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTF--IEQSRHYADVLRKKGYK 268 (303)
T ss_dssp SCCCCCHHHHTCTTTSGGGTTCCCTTTTTTTCGGGCCCCCGGGGTTSEEEEEEEEESCHHH--HHHHHHHHHHHHHHTCC
T ss_pred eeeeccHhhhcccccchhhhhcCCHHHHHHcCchhhcccccccCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHHCCCc
Confidence 9987742111000 00111112223344566777 566655 8999999999999988 99999999999999999
Q ss_pred EEEEEeCCCCCc
Q 002194 865 CRLVILPFESHG 876 (954)
Q Consensus 865 ~~~~~~~~~~H~ 876 (954)
++++++|+++|.
T Consensus 269 ~~~~~~~g~~H~ 280 (303)
T 4e15_A 269 ASFTLFKGYDHF 280 (303)
T ss_dssp EEEEEEEEEETT
T ss_pred eEEEEeCCCCch
Confidence 999999999995
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-17 Score=193.27 Aligned_cols=355 Identities=12% Similarity=0.103 Sum_probs=228.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccc--------cccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceee
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELA--------RPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~ 181 (954)
.+..+.++|||+.|+....++...+++.. .....+..+.+++++......+....|.+|+.. + .....
T Consensus 182 ~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~--~--~~~~~ 257 (577)
T 2ymu_A 182 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--G--QLLQT 257 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT--S--CEEEE
T ss_pred ceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC--C--CEEEE
Confidence 34567899999999988776443344322 223334556677766554444444678999863 2 33334
Q ss_pred eecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 182 lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
+.. ....+..++|+|||+.|+.... ...|.+++.++...+.+...... +..++|+|||+.|+..
T Consensus 258 ~~~--~~~~v~~v~~~~d~~~l~~~~~---------d~~i~~w~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~t~ 321 (577)
T 2ymu_A 258 LTG--HSSSVNGVAFRPDGQTIASASD---------DKTVKLWNRNGQLLQTLTGHSSS-----VWGVAFSPDGQTIASA 321 (577)
T ss_dssp ECC--CSSCEEEEEECTTSSEEEEEET---------TSCEEEEETTSCEEEEECCCSSC-----EEEEEECTTSSEEEEE
T ss_pred Eec--CCCCEEEEEEcCCCCEEEEEeC---------CCEEEEEeCCCcEEEEEecCCCC-----eEEEEECCCCCEEEEE
Confidence 433 2246888999999999988652 34567778766544444433322 6688999999999876
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-cccccccc
Q 002194 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDP 339 (954)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~ 339 (954)
. . ...|.++++ +.....+... ..+..++|
T Consensus 322 ~---------------------~----------------------------d~~i~~w~~~~~~~~~~~~~~~~v~~~~~ 352 (577)
T 2ymu_A 322 S---------------------D----------------------------DKTVKLWNRNGQHLQTLTGHSSSVWGVAF 352 (577)
T ss_dssp E---------------------T----------------------------TSCEEEEETTSCEEEEECCCSSCEEEEEE
T ss_pred e---------------------C----------------------------CCeEEEEeCCCCeeEEEeCCCCCEEEEEE
Confidence 1 1 123555667 4455555554 66788999
Q ss_pred CCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 340 SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
+|||++|+..+.+ +.+.+|+.++.....+..+. ..+..++|+|||+.++..
T Consensus 353 s~~g~~l~~~~~d-------------g~v~~~~~~~~~~~~~~~~~-------------~~v~~~~~s~dg~~l~~~--- 403 (577)
T 2ymu_A 353 SPDGQTIASASDD-------------KTVKLWNRNGQLLQTLTGHS-------------SSVRGVAFSPDGQTIASA--- 403 (577)
T ss_dssp CTTSSEEEEEETT-------------SEEEEEETTCCEEEEEECCS-------------SCEEEEEECTTSSCEEEE---
T ss_pred CCCCCEEEEEeCC-------------CEEEEEcCCCCEEEEecCCC-------------CCeEEEEECCCCCEEEEE---
Confidence 9999999987733 37899998877666655432 345679999999987765
Q ss_pred ccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002194 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 499 (954)
+..+.|.+|+. ++.....+..+...+..++|+||++.|+....+. .|.+++.++ +.....
T Consensus 404 ----------~~d~~v~~~~~---~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~----~v~~w~~~~---~~~~~~ 463 (577)
T 2ymu_A 404 ----------SDDKTVKLWNR---NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK----TVKLWNRNG---QLLQTL 463 (577)
T ss_dssp ----------ETTSEEEEECT---TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTS---CEEEEE
T ss_pred ----------eCCCEEEEEeC---CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCC----EEEEEECCC---CEEEEE
Confidence 33557889985 5555566677777788899999999998876543 244445544 222223
Q ss_pred cCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCccccccee
Q 002194 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (954)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 579 (954)
..+...+.. +.|+|||++|+.... ...|++||.++...+.+...... +
T Consensus 464 ~~~~~~v~~------~~~spd~~~las~~~---------------------d~~i~iw~~~~~~~~~~~~h~~~-----v 511 (577)
T 2ymu_A 464 TGHSSSVRG------VAFSPDGQTIASASD---------------------DKTVKLWNRNGQLLQTLTGHSSS-----V 511 (577)
T ss_dssp ECCSSCEEE------EEECTTSCEEEEEET---------------------TSEEEEEETTSCEEEEEECCSSC-----E
T ss_pred cCCCCCEEE------EEEcCCCCEEEEEeC---------------------CCEEEEEcCCCCEEEEEeCCCCC-----E
Confidence 333333333 789999999987762 23589999765544444433321 2
Q ss_pred EEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEee
Q 002194 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQIT 625 (954)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt 625 (954)
.. .+|||||+.|+.... -..+++|+..+.....+.
T Consensus 512 ~~-------l~~s~dg~~l~s~~~----dg~v~lwd~~~~~~~~~~ 546 (577)
T 2ymu_A 512 RG-------VAFSPDGQTIASASD----DKTVKLWNRNGQLLQTLT 546 (577)
T ss_dssp EE-------EEECTTSSCEEEEET----TSEEEEECTTSCEEEEEE
T ss_pred EE-------EEEcCCCCEEEEEEC----cCEEEEEeCCCCEEEEEc
Confidence 22 469999987764333 256889986443333343
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.7e-19 Score=191.50 Aligned_cols=232 Identities=17% Similarity=0.131 Sum_probs=159.4
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHC-CcEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-GFAI 715 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G~~V 715 (954)
...+.+++++.+| .+.+++|.|++ ..+.|+||++|||.+..+. ...+ ..+...|+++ ||.|
T Consensus 46 ~~~~~~~i~~~~g-~i~~~~~~p~~-----~~~~p~vv~~HGgg~~~g~--------~~~~----~~~~~~la~~~g~~v 107 (311)
T 2c7b_A 46 AETRDVHIPVSGG-SIRARVYFPKK-----AAGLPAVLYYHGGGFVFGS--------IETH----DHICRRLSRLSDSVV 107 (311)
T ss_dssp SEEEEEEEEETTE-EEEEEEEESSS-----CSSEEEEEEECCSTTTSCC--------TGGG----HHHHHHHHHHHTCEE
T ss_pred ceEEEEEecCCCC-cEEEEEEecCC-----CCCCcEEEEECCCcccCCC--------hhhh----HHHHHHHHHhcCCEE
Confidence 4578889998887 89999999975 1247999999997532221 1111 2355667775 9999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhCCC----cccEEE
Q 002194 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGI 788 (954)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v 788 (954)
+.+++ +|+|.+. ++...+|+.++++++.++. .+|+++|+|+|+|+||++|+.++.+.|+ .++++|
T Consensus 108 ~~~d~---rg~g~~~-----~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~v 179 (311)
T 2c7b_A 108 VSVDY---RLAPEYK-----FPTAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQV 179 (311)
T ss_dssp EEECC---CCTTTSC-----TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEE
T ss_pred EEecC---CCCCCCC-----CCccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEE
Confidence 99555 4555442 2345788899999998762 4678899999999999999999988765 599999
Q ss_pred EeccCCCCCCCCC-----------CCcccc--chhhhc----H--HHHHhcCcccc-cCCCCCCEEEEEeCCCCCCCCch
Q 002194 789 ARSGAYNRTLTPF-----------GFQNED--RTLWEA----T--STYVEMSPFMS-ANKLKKPILLVHGEEDNNSGTLT 848 (954)
Q Consensus 789 ~~~~~~~~~~~~~-----------~~~~~~--~~~~~~----~--~~~~~~sp~~~-~~~~~~P~Lii~G~~D~~v~~~~ 848 (954)
+++|..+...... .+.... ...+.. . ......+|+.. +..+ .|+||+||++|..+
T Consensus 180 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~-~P~lii~G~~D~~~---- 254 (311)
T 2c7b_A 180 LIYPVVNMTGVPTASLVEFGVAETTSLPIELMVWFGRQYLKRPEEAYDFKASPLLADLGGL-PPALVVTAEYDPLR---- 254 (311)
T ss_dssp EESCCCCCSSCCCHHHHHHHHCTTCSSCHHHHHHHHHHHCSSTTGGGSTTTCGGGSCCTTC-CCEEEEEETTCTTH----
T ss_pred EECCccCCccccccCCccHHHhccCCCCHHHHHHHHHHhCCCCccccCcccCcccccccCC-CcceEEEcCCCCch----
Confidence 9999877311000 000000 000000 0 00011233322 2233 39999999999875
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCCCcCCC----cccHHHHHHHHHHHHHHhcc
Q 002194 849 MQSDRFFNALKGHGALCRLVILPFESHGYAA----RESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 849 ~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~fl~~~l~ 899 (954)
.++..++++++..+.+++++++++++|.+.. .+....+.+.+.+||++++.
T Consensus 255 ~~~~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (311)
T 2c7b_A 255 DEGELYAYKMKASGSRAVAVRFAGMVHGFVSFYPFVDAGREALDLAAASIRSGLQ 309 (311)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCccccccccccCHHHHHHHHHHHHHHHHHhc
Confidence 3567788999999999999999999998752 24457888999999999874
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-17 Score=185.01 Aligned_cols=306 Identities=14% Similarity=0.085 Sum_probs=194.1
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..|+| ||++|+|+....+........+||++++++++.+++ .. +..+.|||||+.|+|......
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---~~------~~~~~~SpDg~~la~~~~~~~--- 81 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---EN------ATMPRISPDGKKIAFMRANEE--- 81 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE---ES------CEEEEECTTSSEEEEEEEETT---
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc---cc------CCCeEECCCCCEEEEEEeccC---
Confidence 5677888 999999987543222233478899999999988877 11 558999999999998721100
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~ 347 (954)
+ +..+||++++ +|+.++++.. . +..+.|||||++|+
T Consensus 82 ----------------------------------~-------~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~ 119 (347)
T 2gop_A 82 ----------------------------------K-------KVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLL 119 (347)
T ss_dssp ----------------------------------T-------TEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEE
T ss_pred ----------------------------------C-------CcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEE
Confidence 0 2356999999 7887777755 5 88899999999999
Q ss_pred EEeecCCccc------ccccC--------CCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCC
Q 002194 348 ISSIHRPYSF------IVPCG--------RFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (954)
Q Consensus 348 ~~s~~~~~~~------~~~~~--------~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~ 412 (954)
|.+...+... ..+.. .....|++|++++++. +.++. + .+..+.|||||
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--------------~~~~~~~spdg-- 182 (347)
T 2gop_A 120 IVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--------------RFSSGIWHRDK-- 182 (347)
T ss_dssp EEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E--------------TTCEEEEETTE--
T ss_pred EEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C--------------CcccccCCCCe--
Confidence 9985421000 00000 0124799999998877 66654 2 12468899999
Q ss_pred ceEEEEeccCCCccccccC-CCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccc----cceEEEEEc
Q 002194 413 TLYWAETQDGGDAKVEVTP-RDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT----RRTRTWVIS 487 (954)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~----~~~~l~~~d 487 (954)
++|.......... .. ...||+++ +++.+.++.. ..+. .+||||++|+|.+.... ...+||.++
T Consensus 183 ~~~~~~~~~~~~~----~~~~~~l~~~d-----~~~~~~l~~~-~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 183 IVVNVPHREIIPQ----YFKFWDIYIWE-----DGKEEKMFEK-VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp EEEEEECCCSSCC----SSCCEEEEEEE-----TTEEEEEEEE-ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred EEEEEeccccccc----ccccccEEEeC-----CCceEEeccC-ccee--eECCCCCEEEEEEccccCCccccceEEEEC
Confidence 6666332111000 01 33677765 4556677655 3333 44999999999876532 236899999
Q ss_pred CCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEE
Q 002194 488 PGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (954)
Q Consensus 488 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 567 (954)
++ +.+.++......+.. .+.|+ || +++..... ...+|| ++ +|+.+++
T Consensus 251 --~~--~~~~l~~~~~~~~~~-----~~~~s-dg--~~~~~~~~------------------~~~~l~-~~--~g~~~~~ 297 (347)
T 2gop_A 251 --GK--EVMGILDEVDRGVGQ-----AKIKD-GK--VYFTLFEE------------------GSVNLY-IW--DGEIKPI 297 (347)
T ss_dssp --SS--CEEESSTTCCSEEEE-----EEEET-TE--EEEEEEET------------------TEEEEE-EE--SSSEEEE
T ss_pred --CC--ceEeccccCCcccCC-----ccEEc-Cc--EEEEEecC------------------CcEEEE-Ec--CCceEEE
Confidence 32 344444332111110 15688 87 45544211 133577 77 5677777
Q ss_pred eccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEeecCCCCC
Q 002194 568 WESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPY 631 (954)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~~~~ 631 (954)
+..++. +.. .+|++ .+++...+...|.++|.++ |+.++||..|..+
T Consensus 298 ~~~~~~-----v~~-------~~~s~---~~~~~~~~~~~~~~l~~~~---g~~~~lt~~n~~~ 343 (347)
T 2gop_A 298 AKGRHW-----IMG-------FDVDE---IVVYLKETATRLRELFTWD---GEEKQLTDYNDPI 343 (347)
T ss_dssp ECSSSE-----EEE-------EEESS---SEEEEEECSSSCCEEEEES---SSEEECCCTTSTT
T ss_pred ecCCCe-----EEe-------eeeeC---cEEEEEcCCCChHHheEeC---CcEEEeccccHhH
Confidence 654321 121 35666 5778888888888999987 7788899887643
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-18 Score=179.17 Aligned_cols=221 Identities=17% Similarity=0.140 Sum_probs=151.8
Q ss_pred CCceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCc---ccHHHHHHHHC
Q 002194 636 SLQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI---GSTSVLLWLAR 711 (954)
Q Consensus 636 ~~~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~la~~ 711 (954)
....+.+++.+. +|..+.+++|+|+++++.+ ++|+||++||+..... .|... ....+..|+++
T Consensus 29 ~g~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~--~~P~vv~lHG~g~~~~-----------~~~~~~~~~~~~~~~l~~~ 95 (268)
T 1jjf_A 29 RGQVVNISYFSTATNSTRPARVYLPPGYSKDK--KYSVLYLLHGIGGSEN-----------DWFEGGGRANVIADNLIAE 95 (268)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEECTTCCTTS--CBCEEEEECCTTCCTT-----------TTTTTTTCHHHHHHHHHHT
T ss_pred CceEEEEEEeccccCCceEEEEEeCCCCCCCC--CccEEEEECCCCCCcc-----------hhhhccccHHHHHHHHHHc
Confidence 345677888765 6789999999999875533 5999999999753211 12111 12235567776
Q ss_pred ----CcEEEEcCCCCCCCCCCcccchhhHHHHHHH-HHHHHHHHHHcCCC--CCCcEEEEeeChHHHHHHHHHHhCCCcc
Q 002194 712 ----GFAILGGPTTPIIGEGDEEANDRFVEQLVAC-AEAAVEEVVRRGVA--HPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (954)
Q Consensus 712 ----G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D-~~~av~~l~~~~~~--d~~ri~l~G~S~GG~~a~~~a~~~p~~~ 784 (954)
||+|+.+++++. +.... ..+ ....++ +.++++++.++..+ |+++++|+|+|+||++|+.++.++|++|
T Consensus 96 g~~~~~~vv~~d~~~~---~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 170 (268)
T 1jjf_A 96 GKIKPLIIVTPNTNAA---GPGIA-DGY-ENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKF 170 (268)
T ss_dssp TSSCCCEEEEECCCCC---CTTCS-CHH-HHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTC
T ss_pred CCCCCEEEEEeCCCCC---Ccccc-ccH-HHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhh
Confidence 599999766533 22111 112 222333 45666777766444 8899999999999999999999999999
Q ss_pred cEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCC-EEEEEeCCCCCCCCchHHHHHHHHHHHhCCC
Q 002194 785 CCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKP-ILLVHGEEDNNSGTLTMQSDRFFNALKGHGA 863 (954)
Q Consensus 785 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P-~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~ 863 (954)
+++|+++|..+.... ...+.... .....+.| +|++||++|.++| . +++++++|+..|+
T Consensus 171 ~~~v~~s~~~~~~~~--------~~~~~~~~---------~~~~~~~pp~li~~G~~D~~v~--~--~~~~~~~l~~~g~ 229 (268)
T 1jjf_A 171 AYIGPISAAPNTYPN--------ERLFPDGG---------KAAREKLKLLFIACGTNDSLIG--F--GQRVHEYCVANNI 229 (268)
T ss_dssp SEEEEESCCTTSCCH--------HHHCTTTT---------HHHHHHCSEEEEEEETTCTTHH--H--HHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCCch--------hhhcCcch---------hhhhhcCceEEEEecCCCCCcc--H--HHHHHHHHHHCCC
Confidence 999999997553210 00010000 00112344 9999999999875 3 7789999999999
Q ss_pred cEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 864 LCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 864 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
++++++||+++|.+. .....+..+++||.++.
T Consensus 230 ~~~~~~~~g~~H~~~---~~~~~~~~~~~~l~~~~ 261 (268)
T 1jjf_A 230 NHVYWLIQGGGHDFN---VWKPGLWNFLQMADEAG 261 (268)
T ss_dssp CCEEEEETTCCSSHH---HHHHHHHHHHHHHHHHT
T ss_pred ceEEEEcCCCCcCHh---HHHHHHHHHHHHHHhcC
Confidence 999999999999873 23455678899998874
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-18 Score=181.33 Aligned_cols=227 Identities=17% Similarity=0.128 Sum_probs=160.7
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEc
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (954)
.+.+.+. .+|.++.++++.|++ .+.|+||++||+... ........++..|+++||.|+.
T Consensus 22 ~~~~~~~-~~g~~l~~~~~~p~~------~~~p~vv~~HG~~~~-------------~~~~~~~~~~~~l~~~G~~v~~- 80 (270)
T 3pfb_A 22 MATITLE-RDGLQLVGTREEPFG------EIYDMAIIFHGFTAN-------------RNTSLLREIANSLRDENIASVR- 80 (270)
T ss_dssp EEEEEEE-ETTEEEEEEEEECSS------SSEEEEEEECCTTCC-------------TTCHHHHHHHHHHHHTTCEEEE-
T ss_pred ceEEEec-cCCEEEEEEEEcCCC------CCCCEEEEEcCCCCC-------------ccccHHHHHHHHHHhCCcEEEE-
Confidence 4555554 689999999998863 137999999996421 0111123456678899999999
Q ss_pred CCCCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC
Q 002194 719 PTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (954)
Q Consensus 719 ~~~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (954)
.+..|+|.+... ........+|+.++++++.++... ++++++|||+||.+++.++.++|++++++|+++|....
T Consensus 81 --~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~--~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~ 156 (270)
T 3pfb_A 81 --FDFNGHGDSDGKFENMTVLNEIEDANAILNYVKTDPHV--RNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATL 156 (270)
T ss_dssp --ECCTTSTTSSSCGGGCCHHHHHHHHHHHHHHHHTCTTE--EEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTHH
T ss_pred --EccccccCCCCCCCccCHHHHHHhHHHHHHHHHhCcCC--CeEEEEEeCchhHHHHHHHHhCchhhcEEEEecccccc
Confidence 555677776543 223567789999999999886433 49999999999999999999999999999999986531
Q ss_pred CC------------CCCCCccc----c-chhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHH
Q 002194 797 TL------------TPFGFQNE----D-RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (954)
Q Consensus 797 ~~------------~~~~~~~~----~-~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~ 859 (954)
.. .+...... . .........+...++...+.++++|+|+++|++|..+| ...+.++++.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~ 234 (270)
T 3pfb_A 157 KGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVS--PNASKKYDQIYQ 234 (270)
T ss_dssp HHHHHHTEETTEECCTTSCCSEEEETTEEEEHHHHHHHHHCCHHHHHTTCCSCEEEEEETTCSSSC--THHHHHHHHHCS
T ss_pred chhhhhhhhhccccCcccccccccccccccchhHhhcccccCHHHHHhhCCccEEEEEcCCCCCCC--HHHHHHHHHhCC
Confidence 10 00000000 0 00001112334445566778899999999999999998 888888877643
Q ss_pred hCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 860 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
+++++++++++|.+. .+....+.+.+.+||+++
T Consensus 235 ----~~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~~~ 267 (270)
T 3pfb_A 235 ----NSTLHLIEGADHCFS-DSYQKNAVNLTTDFLQNN 267 (270)
T ss_dssp ----SEEEEEETTCCTTCC-THHHHHHHHHHHHHHC--
T ss_pred ----CCeEEEcCCCCcccC-ccchHHHHHHHHHHHhhc
Confidence 479999999999975 556778888888888764
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-18 Score=187.16 Aligned_cols=233 Identities=17% Similarity=0.150 Sum_probs=164.0
Q ss_pred eEEE-EEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 639 KELI-KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 639 ~~~~-~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
.+.+ .+...+|.+|.++++.|.+ .+.|+||++||+..... ....++..|+++||.|++
T Consensus 34 ~~~~~~~~~~dg~~l~~~~~~p~~------~~~p~vv~~HG~~~~~~---------------~~~~~~~~l~~~g~~vi~ 92 (342)
T 3hju_A 34 YQDLPHLVNADGQYLFCRYWKPTG------TPKALIFVSHGAGEHSG---------------RYEELARMLMGLDLLVFA 92 (342)
T ss_dssp TTSSCEEECTTSCEEEEEEECCSS------CCSEEEEEECCTTCCGG---------------GGHHHHHHHHTTTEEEEE
T ss_pred cccCceEEccCCeEEEEEEeCCCC------CCCcEEEEECCCCcccc---------------hHHHHHHHHHhCCCeEEE
Confidence 3444 6778899999999998863 23799999999742111 112456678888999999
Q ss_pred cCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCC
Q 002194 718 GPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (954)
.+.+|+|.+... .......++|+.++++++..+ .+.++++|+|||+||.+++.++.++|++++++|+++|..
T Consensus 93 ---~D~~G~G~S~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 167 (342)
T 3hju_A 93 ---HDHVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLV 167 (342)
T ss_dssp ---ECCTTSTTSCSSTTCCSCTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCC
T ss_pred ---EcCCCCcCCCCcCCCcCcHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECccc
Confidence 555677777542 233567789999999999887 455689999999999999999999999999999999876
Q ss_pred CCCCCCCC------------------Cccccch-h---hhcHHHHHh---------------------cCcccccCCCCC
Q 002194 795 NRTLTPFG------------------FQNEDRT-L---WEATSTYVE---------------------MSPFMSANKLKK 831 (954)
Q Consensus 795 ~~~~~~~~------------------~~~~~~~-~---~~~~~~~~~---------------------~sp~~~~~~~~~ 831 (954)
........ ....... . ......+.. .+....+.++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 247 (342)
T 3hju_A 168 LANPESATTFKVLAAKVLNLVLPNLSLGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTV 247 (342)
T ss_dssp SCCTTTTSHHHHHHHHHHHHHCTTCBCCCCCGGGSCSCHHHHHHHHTCTTCCCSCCBHHHHHHHHHHHHHHHHHGGGCCS
T ss_pred ccchhhhhHHHHHHHHHHHHhccccccCcccccccccchHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHhCCc
Confidence 53211000 0000000 0 000000000 011234677899
Q ss_pred CEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCc--ccHHHHHHHHHHHHHHhcccC
Q 002194 832 PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR--ESIMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 832 P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~--~~~~~~~~~i~~fl~~~l~~~ 901 (954)
|+|+++|++|..++ .+.+.++++.+.. .++++++++++||.+... +....++..+++||++++...
T Consensus 248 Pvlii~G~~D~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (342)
T 3hju_A 248 PFLLLQGSADRLCD--SKGAYLLMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTATA 315 (342)
T ss_dssp CEEEEEETTCSSSC--HHHHHHHHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CEEEEEeCCCcccC--hHHHHHHHHHcCC--CCceEEEECCCCchhhcCChHHHHHHHHHHHHHHhcccCCC
Confidence 99999999999998 8888888887753 357999999999987532 224567788999999998643
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=183.48 Aligned_cols=240 Identities=14% Similarity=0.019 Sum_probs=156.2
Q ss_pred CceEEEEEEcC-CCeEEEEEEEcCCCCCC--CCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCc
Q 002194 637 LQKELIKYQRK-DGVQLSATLYLPPGYDP--SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (954)
Q Consensus 637 ~~~~~~~~~~~-~g~~l~~~l~~P~~~~~--~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (954)
|..+.+++.+. .|..+.+++|+|++++. ..+++.|+||++||+.... ..|.... .....+...||
T Consensus 5 m~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~~-----------~~~~~~~-~~~~~~~~~~~ 72 (263)
T 2uz0_A 5 PAVMKIEYYSQVLDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGNH-----------NSWLKRT-NVERLLRGTNL 72 (263)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECC---------CCBCEEEEECCTTCCT-----------THHHHHS-CHHHHTTTCCC
T ss_pred ceEeEEEEechhhCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCCH-----------HHHHhcc-CHHHHHhcCCe
Confidence 55677788754 68899999999988621 1123589999999974211 1110000 12222334799
Q ss_pred EEEEcCCCCCCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEec
Q 002194 714 AILGGPTTPIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (954)
Q Consensus 714 ~V~~~~~~~~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (954)
+|+.+++. +.+.... ...+.....+|+...++.+..+..+|+++++|+|||+||++|+.++. +|++|+++|+++
T Consensus 73 ~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~ 148 (263)
T 2uz0_A 73 IVVMPNTS---NGWYTDTQYGFDYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFS 148 (263)
T ss_dssp EEEECCCT---TSTTSBCTTSCBHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEES
T ss_pred EEEEECCC---CCccccCCCcccHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEec
Confidence 99985543 3322221 22334555677777776654434568899999999999999999999 889999999999
Q ss_pred cCCCCCCCCCCCccc-cch----hhh--cHHHHHhcCcccccCCCC--CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC
Q 002194 792 GAYNRTLTPFGFQNE-DRT----LWE--ATSTYVEMSPFMSANKLK--KPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862 (954)
Q Consensus 792 ~~~~~~~~~~~~~~~-~~~----~~~--~~~~~~~~sp~~~~~~~~--~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g 862 (954)
|..+........... ... .+. ....+...+|...+.++. +|+|++||++|.++ ..+++++++|+..|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v----~~~~~~~~~l~~~g 224 (263)
T 2uz0_A 149 GALSFQNFSPESQNLGSPAYWRGVFGEIRDWTTSPYSLESLAKKSDKKTKLWAWCGEQDFLY----EANNLAVKNLKKLG 224 (263)
T ss_dssp CCCCSSSCCGGGTTCSCHHHHHHHHCCCSCTTTSTTSHHHHGGGCCSCSEEEEEEETTSTTH----HHHHHHHHHHHHTT
T ss_pred CCcchhhccccccccccchhHHHHcCChhhhccccCCHHHHHHhccCCCeEEEEeCCCchhh----HHHHHHHHHHHHCC
Confidence 987654321100000 000 000 011223445555666665 79999999999875 45789999999999
Q ss_pred CcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhccc
Q 002194 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 863 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (954)
.+++++++++ +|.+.. ....+..+++||.++++.
T Consensus 225 ~~~~~~~~~g-~H~~~~---~~~~~~~~~~~l~~~l~~ 258 (263)
T 2uz0_A 225 FDVTYSHSAG-THEWYY---WEKQLEVFLTTLPIDFKL 258 (263)
T ss_dssp CEEEEEEESC-CSSHHH---HHHHHHHHHHHSSSCCCC
T ss_pred CCeEEEECCC-CcCHHH---HHHHHHHHHHHHHhhccc
Confidence 9999999999 998631 245678889999888753
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-18 Score=180.30 Aligned_cols=205 Identities=17% Similarity=0.155 Sum_probs=153.2
Q ss_pred CceEEEEEEcC--CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcE
Q 002194 637 LQKELIKYQRK--DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (954)
Q Consensus 637 ~~~~~~~~~~~--~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (954)
...+.++++.. +|.. .+.+|+|... .+++.|+||++||+.... ..| ......|+++||.
T Consensus 23 ~~~~~~~~~~~~~~~~~-~~~l~~p~~~---~~~~~p~vv~~HG~~~~~-----------~~~----~~~~~~l~~~G~~ 83 (262)
T 1jfr_A 23 YATSQTSVSSLVASGFG-GGTIYYPTST---ADGTFGAVVISPGFTAYQ-----------SSI----AWLGPRLASQGFV 83 (262)
T ss_dssp SCEEEEEECTTTCSSSC-CEEEEEESCC---TTCCEEEEEEECCTTCCG-----------GGT----TTHHHHHHTTTCE
T ss_pred CCccceEecceeccCCC-ceeEEecCCC---CCCCCCEEEEeCCcCCCc-----------hhH----HHHHHHHHhCCCE
Confidence 34566666654 3332 4677888652 123589999999963211 111 2356778899999
Q ss_pred EEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHH----cCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEe
Q 002194 715 ILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVR----RGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (954)
Q Consensus 715 V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~----~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (954)
|+.+++ .|+|.+. .....|+..+++++.+ ...++.++++++|||+||.+++.++.++|+ ++++|++
T Consensus 84 v~~~d~---~g~g~~~------~~~~~d~~~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~ 153 (262)
T 1jfr_A 84 VFTIDT---NTTLDQP------DSRGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPL 153 (262)
T ss_dssp EEEECC---SSTTCCH------HHHHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEE
T ss_pred EEEeCC---CCCCCCC------chhHHHHHHHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEee
Confidence 999554 5666542 2345688899999988 345677899999999999999999999987 9999999
Q ss_pred ccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHH-HHHHHHHHHhCCCcEEEEE
Q 002194 791 SGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQ-SDRFFNALKGHGALCRLVI 869 (954)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~-~~~~~~~l~~~g~~~~~~~ 869 (954)
+|... ...+.++++|+|++||++|..++ .+. ++++++.++ .+.++++++
T Consensus 154 ~p~~~---------------------------~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~l~-~~~~~~~~~ 203 (262)
T 1jfr_A 154 TGWNT---------------------------DKTWPELRTPTLVVGADGDTVAP--VATHSKPFYESLP-GSLDKAYLE 203 (262)
T ss_dssp SCCCS---------------------------CCCCTTCCSCEEEEEETTCSSSC--TTTTHHHHHHHSC-TTSCEEEEE
T ss_pred cccCc---------------------------cccccccCCCEEEEecCccccCC--chhhHHHHHHHhh-cCCCceEEE
Confidence 87532 23345678999999999999998 887 999999884 356789999
Q ss_pred eCCCCCcCCCcccHHHHHHHHHHHHHHhcccC
Q 002194 870 LPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 870 ~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (954)
+++++|.+.. +....+.+.+.+||++++...
T Consensus 204 ~~~~~H~~~~-~~~~~~~~~i~~fl~~~l~~~ 234 (262)
T 1jfr_A 204 LRGASHFTPN-TSDTTIAKYSISWLKRFIDSD 234 (262)
T ss_dssp ETTCCTTGGG-SCCHHHHHHHHHHHHHHHSCC
T ss_pred eCCCCcCCcc-cchHHHHHHHHHHHHHHhcCc
Confidence 9999998753 344678899999999998654
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=191.96 Aligned_cols=238 Identities=15% Similarity=0.069 Sum_probs=162.8
Q ss_pred CCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEE
Q 002194 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (954)
Q Consensus 636 ~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (954)
.+..+.+++++.+|..+.+++|.|++. . .+.|+||++|||.+..+.. . ..........|+++||.|
T Consensus 79 ~~~~~~~~~~~~~g~~l~~~v~~p~~~--~--~~~p~vv~iHGgg~~~g~~--------~--~~~~~~~~~~la~~g~~v 144 (361)
T 1jkm_A 79 DVETSTETILGVDGNEITLHVFRPAGV--E--GVLPGLVYTHGGGMTILTT--------D--NRVHRRWCTDLAAAGSVV 144 (361)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEETTC--C--SCEEEEEEECCSTTTSSCS--------S--SHHHHHHHHHHHHTTCEE
T ss_pred CceeeeeeeecCCCCeEEEEEEeCCCC--C--CCCeEEEEEcCCccccCCC--------c--ccchhHHHHHHHhCCCEE
Confidence 345677888888888999999999752 1 2589999999986433221 1 001123466788899999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHh-----CCCcccEE
Q 002194 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAH-----APHLFCCG 787 (954)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~-----~p~~~~a~ 787 (954)
+.+++++..|. . +...+...+.|+.++++|+.++. .+| +|+|+|+|+||.+++.++.+ .|++++++
T Consensus 145 v~~d~r~~gg~---~-~~~~~~~~~~D~~~~~~~v~~~~~~~~~~--~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~ 218 (361)
T 1jkm_A 145 VMVDFRNAWTA---E-GHHPFPSGVEDCLAAVLWVDEHRESLGLS--GVVVQGESGGGNLAIATTLLAKRRGRLDAIDGV 218 (361)
T ss_dssp EEEECCCSEET---T-EECCTTHHHHHHHHHHHHHHHTHHHHTEE--EEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEE
T ss_pred EEEecCCCCCC---C-CCCCCCccHHHHHHHHHHHHhhHHhcCCC--eEEEEEECHHHHHHHHHHHHHHhcCCCcCcceE
Confidence 99776554322 1 12223556789999999998862 344 99999999999999999988 77789999
Q ss_pred EEeccCCCCCCCC---------CCCccccchhhh--c----HHHHH---------hcCcc----cccCCCCCCEEEEEeC
Q 002194 788 IARSGAYNRTLTP---------FGFQNEDRTLWE--A----TSTYV---------EMSPF----MSANKLKKPILLVHGE 839 (954)
Q Consensus 788 v~~~~~~~~~~~~---------~~~~~~~~~~~~--~----~~~~~---------~~sp~----~~~~~~~~P~Lii~G~ 839 (954)
|+++|.++..... ..+.......+. . ...|. ..+|+ ..+.++. |+||+||+
T Consensus 219 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~l~-P~Lii~G~ 297 (361)
T 1jkm_A 219 YASIPYISGGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLP-PFVVAVNE 297 (361)
T ss_dssp EEESCCCCCCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCC-CEEEEEET
T ss_pred EEECCccccccccccccccccCcchhhccCcccCHHHHHHHHHHhCCCCCCCCCcccCccccChhhHcCCC-ceEEEEcC
Confidence 9999987752110 000000000000 0 00010 12333 2335555 99999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC-C----cccH-HHHHHHHHHHHHHhc
Q 002194 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA-A----RESI-MHVLWETDRWLQKYC 898 (954)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~-~----~~~~-~~~~~~i~~fl~~~l 898 (954)
+|..+ .++.+++++|+..|++++++++++++|.+. . .+.. ..+.+.+.+||+++.
T Consensus 298 ~D~~~----~~~~~~~~~l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~~ 358 (361)
T 1jkm_A 298 LDPLR----DEGIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 358 (361)
T ss_dssp TCTTH----HHHHHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred cCcch----hhHHHHHHHHHHcCCCEEEEEeCCCccCccccccccccHHHHHHHHHHHHHHHHhh
Confidence 99875 378899999999999999999999999875 2 1333 677889999998864
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-17 Score=176.15 Aligned_cols=270 Identities=14% Similarity=0.138 Sum_probs=184.2
Q ss_pred CCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechh
Q 002194 216 SSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTF 295 (954)
Q Consensus 216 ~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 295 (954)
.....|+++|+++++.+.+...... +..++|+|||++|++.
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~-----v~~~~~spdg~~l~~~---------------------------------- 59 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPEL-----FEAPNWSPDGKYLLLN---------------------------------- 59 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSC-----CEEEEECTTSSEEEEE----------------------------------
T ss_pred CcceeEEEEeCCCCceeeeccCCcc-----eEeeEECCCCCEEEEE----------------------------------
Confidence 3467899999999988877665433 6789999999999976
Q ss_pred hhhccCccccccccccccceEEEEEe-C-CceeEcCCC---ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEE
Q 002194 296 QDLLKDEYDEDLFDYYATTQLVLVSL-D-GTVKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (954)
Q Consensus 296 ~d~l~~~~d~~~~~~~~~~~l~~~~~-~-G~~~~l~~~---~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l 370 (954)
....|+++++ + ++...+... ..+..++|||||++|++....... ...|++
T Consensus 60 ----------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~---------~~~l~~ 114 (297)
T 2ojh_A 60 ----------------SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFG---------KSAIYL 114 (297)
T ss_dssp ----------------ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTS---------SCEEEE
T ss_pred ----------------cCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCC---------cceEEE
Confidence 2346889999 7 777766643 456789999999999998843221 237888
Q ss_pred EeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceE
Q 002194 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (954)
Q Consensus 371 ~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (954)
++++++..+.+.... ....++|+|||+.++|.... +..-.||.++. .+++.+.
T Consensus 115 ~~~~~~~~~~~~~~~--------------~~~~~~~spdg~~l~~~~~~----------~~~~~l~~~~~---~~~~~~~ 167 (297)
T 2ojh_A 115 LPSTGGTPRLMTKNL--------------PSYWHGWSPDGKSFTYCGIR----------DQVFDIYSMDI---DSGVETR 167 (297)
T ss_dssp EETTCCCCEECCSSS--------------SEEEEEECTTSSEEEEEEEE----------TTEEEEEEEET---TTCCEEE
T ss_pred EECCCCceEEeecCC--------------CccceEECCCCCEEEEEECC----------CCceEEEEEEC---CCCcceE
Confidence 888777666655432 23467899999988876321 12236777775 5667777
Q ss_pred EeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEee
Q 002194 451 LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (954)
Q Consensus 451 l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~ 530 (954)
+......+..+.|+|||+.|++....++ ..+||.++.+++ ....+.... ..+.. +.|+|||++|++....
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~-~~~i~~~~~~~~--~~~~~~~~~-~~~~~------~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSRTG-QMQIWRVRVDGS--SVERITDSA-YGDWF------PHPSPSGDKVVFVSYD 237 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECTTS-SCEEEEEETTSS--CEEECCCCS-EEEEE------EEECTTSSEEEEEEEE
T ss_pred cccCCCccccceECCCCCEEEEEecCCC-CccEEEECCCCC--CcEEEecCC-cccCC------eEECCCCCEEEEEEcC
Confidence 7777777788999999999999876443 378999997764 333333221 12222 7899999999998743
Q ss_pred ccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecC
Q 002194 531 ENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESK 605 (954)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~ 605 (954)
.... ..+......|++||+++++.+.+....+. ......++|+|||+.+++.....
T Consensus 238 ~~~~----------~~~~~~~~~l~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 238 ADVF----------DHPRDLDVRVQLMDMDGGNVETLFDLFGG---------QGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TTCC----------SCCSSEEEEEEEEETTSCSCEEEEEEEES---------TTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCC----------cccccCceEEEEEecCCCCceeeeccCCC---------CcccccceECCCCCEEEEEEecc
Confidence 2100 00000124699999999988777642211 00112367999999998877654
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-18 Score=207.00 Aligned_cols=246 Identities=19% Similarity=0.216 Sum_probs=164.9
Q ss_pred EcCCCeE--EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcc------------------cCc----------------
Q 002194 645 QRKDGVQ--LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKD------------------AAG---------------- 688 (954)
Q Consensus 645 ~~~~g~~--l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~------------------~~~---------------- 688 (954)
+..||.+ |.+.+|+|++ .+++|+||..||....... .++
T Consensus 179 ~~~DG~~d~L~a~l~~P~~-----~~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~ 253 (763)
T 1lns_A 179 SEQRGENDLIKIQIIRPKS-----TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAK 253 (763)
T ss_dssp TTCSSSCCEEEEEEEECCC-----SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCC
T ss_pred cCCCCCeeeEEEEEEecCC-----CCcccEEEecCCcCCCCcccccccccccccccccccCccccccccccccccccccc
Confidence 4579998 9999999986 2359999987763221100 000
Q ss_pred ---cccCCCCCCCCc-ccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc-hhhHHHHHHHHHHHHHHHHHcC---------
Q 002194 689 ---QVRGSPNEFPRI-GSTSVLLWLARGFAILGGPTTPIIGEGDEEAN-DRFVEQLVACAEAAVEEVVRRG--------- 754 (954)
Q Consensus 689 ---~~~~~~~~~~~~-~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~-~~~~~~~~~D~~~av~~l~~~~--------- 754 (954)
....+...|... .......|+++||+|+. .+.+|+|.+.+. ..+.....+|+.++++||..+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~---~D~RG~G~S~G~~~~~~~~e~~D~~a~IdwL~~~~~~~~d~~~~ 330 (763)
T 1lns_A 254 ELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIY---VAGVGTRSSDGFQTSGDYQQIYSMTAVIDWLNGRARAYTSRKKT 330 (763)
T ss_dssp CCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEE---ECCTTSTTSCSCCCTTSHHHHHHHHHHHHHHTTSSCEESSTTCC
T ss_pred cccccccchhccccccccchHHHHHHCCCEEEE---ECCCcCCCCCCcCCCCCHHHHHHHHHHHHHHhhccccccccccc
Confidence 000000111110 12346789999999999 555666666543 2233467899999999998531
Q ss_pred -----CCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC---------CCCCCcccc---------chhh
Q 002194 755 -----VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL---------TPFGFQNED---------RTLW 811 (954)
Q Consensus 755 -----~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~---------~~~~~~~~~---------~~~~ 811 (954)
..+..||+++|+||||++++.+|+++|+.++|+|+.+|+.++.. ...++.... ...+
T Consensus 331 ~~v~q~~~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~~~~~ 410 (763)
T 1lns_A 331 HEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNL 410 (763)
T ss_dssp CEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGGG
T ss_pred ccccccCCCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhcccCCchhhhHHhHHHHhhhc
Confidence 12456999999999999999999999999999999998764210 000111000 0000
Q ss_pred ------------hc----------------HHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCC
Q 002194 812 ------------EA----------------TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA 863 (954)
Q Consensus 812 ------------~~----------------~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~ 863 (954)
.. ...|...++...+++|++|+|++||..|.+|| +.++.+++++++. ++
T Consensus 411 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~s~~~~l~~I~~PvLii~G~~D~~vp--~~~a~~l~~al~~-~~ 487 (763)
T 1lns_A 411 DGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVT--PEQAYNFWKALPE-GH 487 (763)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSC--THHHHHHHHHSCT-TC
T ss_pred CcchhhhHHHHHHHHHHHHHhhhhhccCchhHHhhccChhhHhhcCCCCEEEEEECCCCCCC--hHHHHHHHHhhcc-CC
Confidence 00 01233456778889999999999999999998 9999999999987 66
Q ss_pred cEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcccCC
Q 002194 864 LCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 864 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
++++++. +++|.........++.+.+.+||++||+...
T Consensus 488 ~~~l~i~-~~gH~~~~~~~~~~~~~~i~~Ffd~~Lkg~~ 525 (763)
T 1lns_A 488 AKHAFLH-RGAHIYMNSWQSIDFSETINAYFVAKLLDRD 525 (763)
T ss_dssp CEEEEEE-SCSSCCCTTBSSCCHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEe-CCcccCccccchHHHHHHHHHHHHHHhcCCC
Confidence 7777664 5689864322233567899999999998653
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=185.19 Aligned_cols=193 Identities=18% Similarity=0.151 Sum_probs=149.0
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.. .+.+|+|.+.. +.|+||++||+.... .....+...|+++||.|+.++ ..|+
T Consensus 79 ~~g~~-~~~~~~p~~~~-----~~p~vv~~HG~~~~~---------------~~~~~~~~~la~~G~~vv~~d---~~g~ 134 (306)
T 3vis_A 79 ADGFG-GGTIYYPRENN-----TYGAIAISPGYTGTQ---------------SSIAWLGERIASHGFVVIAID---TNTT 134 (306)
T ss_dssp CSSSC-CEEEEEESSCS-----CEEEEEEECCTTCCH---------------HHHHHHHHHHHTTTEEEEEEC---CSST
T ss_pred cCCCc-ceEEEeeCCCC-----CCCEEEEeCCCcCCH---------------HHHHHHHHHHHhCCCEEEEec---CCCC
Confidence 44543 35778886521 489999999963110 011245677888999999954 4566
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHc------CCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC
Q 002194 727 GDEEANDRFVEQLVACAEAAVEEVVRR------GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800 (954)
Q Consensus 727 G~~~~~~~~~~~~~~D~~~av~~l~~~------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~ 800 (954)
|.+. .....|+.++++++.+. ..+|+++++++|||+||.+++.++.++|+ ++++|+++|...
T Consensus 135 g~s~------~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~----- 202 (306)
T 3vis_A 135 LDQP------DSRARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHL----- 202 (306)
T ss_dssp TCCH------HHHHHHHHHHHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS-----
T ss_pred CCCc------chHHHHHHHHHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccC-----
Confidence 6652 23447888999999987 67888999999999999999999999987 999999988532
Q ss_pred CCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchH-HHHHHHHHHHhCCCcEEEEEeCCCCCcCCC
Q 002194 801 FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTM-QSDRFFNALKGHGALCRLVILPFESHGYAA 879 (954)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~-~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 879 (954)
...+.++++|+|++||++|..+| ++ +++++++.++..+ +++++++++++|.+.
T Consensus 203 ----------------------~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~~l~~~~-~~~~~~~~g~gH~~~- 256 (306)
T 3vis_A 203 ----------------------NKSWRDITVPTLIIGAEYDTIAS--VTLHSKPFYNSIPSPT-DKAYLELDGASHFAP- 256 (306)
T ss_dssp ----------------------CCCCTTCCSCEEEEEETTCSSSC--TTTTHHHHHHTCCTTS-CEEEEEETTCCTTGG-
T ss_pred ----------------------ccccccCCCCEEEEecCCCcccC--cchhHHHHHHHhccCC-CceEEEECCCCccch-
Confidence 12345678999999999999998 77 6999999888766 799999999999874
Q ss_pred cccHHHHHHHHHHHHHHhcccC
Q 002194 880 RESIMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 880 ~~~~~~~~~~i~~fl~~~l~~~ 901 (954)
.+....+.+.+.+||++++...
T Consensus 257 ~~~~~~~~~~i~~fl~~~l~~~ 278 (306)
T 3vis_A 257 NITNKTIGMYSVAWLKRFVDED 278 (306)
T ss_dssp GSCCHHHHHHHHHHHHHHHSCC
T ss_pred hhchhHHHHHHHHHHHHHccCc
Confidence 3334678889999999998654
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-17 Score=169.83 Aligned_cols=186 Identities=16% Similarity=0.096 Sum_probs=138.6
Q ss_pred CCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH--CCcEEEEcCCC----------------CCCCCCCc
Q 002194 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA--RGFAILGGPTT----------------PIIGEGDE 729 (954)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~G~~V~~~~~~----------------~~~G~G~~ 729 (954)
.+.|+||++||+... ...| ......|++ +||.|++++.. +..|+|.+
T Consensus 12 ~~~~~vv~~HG~~~~-----------~~~~----~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~ 76 (218)
T 1auo_A 12 PADACVIWLHGLGAD-----------RYDF----MPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPA 76 (218)
T ss_dssp CCSEEEEEECCTTCC-----------TTTT----HHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSS
T ss_pred CCCcEEEEEecCCCC-----------hhhH----HHHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCcc
Confidence 357999999996311 1112 245667777 99999996542 34455543
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHH-hCCCcccEEEEeccCCCCCCCCCCCcccc
Q 002194 730 EAN-DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA-HAPHLFCCGIARSGAYNRTLTPFGFQNED 807 (954)
Q Consensus 730 ~~~-~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~~~~~~~~~~~~~~~~~ 807 (954)
... ........+|+..+++++.+ ..+++++++++|||+||.+++.++. ++|++++++|+++|...... +..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~----~~~-- 149 (218)
T 1auo_A 77 RSISLEELEVSAKMVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFG----DEL-- 149 (218)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCC----TTC--
T ss_pred cccchHHHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCCch----hhh--
Confidence 222 22345567778888888776 3478889999999999999999999 99999999999999765300 000
Q ss_pred chhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHH
Q 002194 808 RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVL 887 (954)
Q Consensus 808 ~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~ 887 (954)
.....++++|+|++||++|..+| ++.++++++.++..|.++++++++ ++|.+. .+..
T Consensus 150 ---------------~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~~-----~~~~ 206 (218)
T 1auo_A 150 ---------------ELSASQQRIPALCLHGQYDDVVQ--NAMGRSAFEHLKSRGVTVTWQEYP-MGHEVL-----PQEI 206 (218)
T ss_dssp ---------------CCCHHHHTCCEEEEEETTCSSSC--HHHHHHHHHHHHTTTCCEEEEEES-CSSSCC-----HHHH
T ss_pred ---------------hhhhcccCCCEEEEEeCCCceec--HHHHHHHHHHHHhCCCceEEEEec-CCCccC-----HHHH
Confidence 00113457899999999999998 999999999999988899999999 999874 3456
Q ss_pred HHHHHHHHHhc
Q 002194 888 WETDRWLQKYC 898 (954)
Q Consensus 888 ~~i~~fl~~~l 898 (954)
+.+.+||.+++
T Consensus 207 ~~~~~~l~~~l 217 (218)
T 1auo_A 207 HDIGAWLAARL 217 (218)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 78999999886
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-17 Score=177.17 Aligned_cols=228 Identities=17% Similarity=0.161 Sum_probs=158.9
Q ss_pred EEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC
Q 002194 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (954)
Q Consensus 643 ~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (954)
.+...+|.++.++++.|.+ .+.|+||++||..... ..| ...+..|+++||.|++ .+
T Consensus 21 ~~~~~~g~~l~~~~~~~~~------~~~~~vv~~hG~~~~~-----------~~~----~~~~~~l~~~g~~v~~---~d 76 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPTG------TPKALIFVSHGAGEHS-----------GRY----EELARMLMGLDLLVFA---HD 76 (303)
T ss_dssp EEECTTSCEEEEEEECCSS------CCSEEEEEECCTTCCG-----------GGG----HHHHHHHHHTTEEEEE---EC
T ss_pred eEecCCCeEEEEEEeccCC------CCCeEEEEECCCCchh-----------hHH----HHHHHHHHhCCCcEEE---eC
Confidence 5778899999999998763 2379999999964211 011 2456778889999999 55
Q ss_pred CCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC-
Q 002194 723 IIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL- 798 (954)
Q Consensus 723 ~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~- 798 (954)
..|+|.+.... ......++|+.++++++.... +..+++++|||+||.+++.++.++|++++++|+++|......
T Consensus 77 ~~G~G~s~~~~~~~~~~~~~~~d~~~~l~~l~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~ 154 (303)
T 3pe6_A 77 HVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDY--PGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPE 154 (303)
T ss_dssp CTTSTTSCSSTTCCSSTHHHHHHHHHHHHHHHHHS--TTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcc--CCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchh
Confidence 66777775321 234677899999999998773 456899999999999999999999999999999998754210
Q ss_pred ----------------CCCCCccccchhh-----hcHHHHHh---------------------cCcccccCCCCCCEEEE
Q 002194 799 ----------------TPFGFQNEDRTLW-----EATSTYVE---------------------MSPFMSANKLKKPILLV 836 (954)
Q Consensus 799 ----------------~~~~~~~~~~~~~-----~~~~~~~~---------------------~sp~~~~~~~~~P~Lii 836 (954)
............+ .....+.. ......+.++++|+|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i 234 (303)
T 3pe6_A 155 SATTFKVLAAKVLNSVLPNLSSGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLL 234 (303)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCCCCCCGGGTCSCHHHHHHHHTCTTSCCSCCCHHHHHHHHHHHHHHHHHGGGCCSCEEEE
T ss_pred ccHHHHHHHHHHHHHhcccccCCccchhhhhcchhHHHHhccCccccccchhhhhHHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 0000000000000 00000000 01123467789999999
Q ss_pred EeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCc--ccHHHHHHHHHHHHHHhccc
Q 002194 837 HGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR--ESIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 837 ~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~--~~~~~~~~~i~~fl~~~l~~ 900 (954)
+|++|..++ ...++++++.+.. ..+++++++++||.+... +....+++.+++||++++..
T Consensus 235 ~g~~D~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~p~~~~~~~~~~~~~l~~~~~~ 296 (303)
T 3pe6_A 235 QGSADRLCD--SKGAYLLMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTAT 296 (303)
T ss_dssp EETTCSSBC--HHHHHHHHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHTTC-
T ss_pred eeCCCCCCC--hHHHHHHHHhccc--CCceEEEeCCCccceeccchHHHHHHHHHHHHHHhccCCC
Confidence 999999998 8888888887642 358999999999987432 22456778899999998753
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-16 Score=173.69 Aligned_cols=301 Identities=9% Similarity=0.011 Sum_probs=192.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccc---------cccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCcee
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELA---------RPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~ 180 (954)
.+..++|||||+.+++.........+... .....+..+.+++++......+ .+.|.+|++..........
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~ 89 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS 89 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSE
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeee
Confidence 45678899999999877654322222111 1222334556666654444333 5789999996532111222
Q ss_pred eeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeec--ccCCCccccccccceeEecCCeEE
Q 002194 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNNSTLL 258 (954)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~~~~wspDG~~l 258 (954)
.+........+..+.|+|||+.|+.... ...|.++++++++.... ...... .+..+.|+|||+.|
T Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l 156 (337)
T 1gxr_A 90 QLDCLNRDNYIRSCKLLPDGCTLIVGGE---------ASTLSIWDLAAPTPRIKAELTSSAP----ACYALAISPDSKVC 156 (337)
T ss_dssp EEECSCTTSBEEEEEECTTSSEEEEEES---------SSEEEEEECCCC--EEEEEEECSSS----CEEEEEECTTSSEE
T ss_pred cccccCCCCcEEEEEEcCCCCEEEEEcC---------CCcEEEEECCCCCcceeeecccCCC----ceEEEEECCCCCEE
Confidence 2221123347889999999999988652 45788888887763222 111221 16688999999988
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-cccc
Q 002194 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYT 335 (954)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~-~~~~ 335 (954)
+... ....|.++++ +++. ..+... ..+.
T Consensus 157 ~~~~-------------------------------------------------~dg~v~~~d~~~~~~~~~~~~~~~~i~ 187 (337)
T 1gxr_A 157 FSCC-------------------------------------------------SDGNIAVWDLHNQTLVRQFQGHTDGAS 187 (337)
T ss_dssp EEEE-------------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEe-------------------------------------------------CCCcEEEEeCCCCceeeeeecccCceE
Confidence 8761 1234778888 6653 344434 6788
Q ss_pred ccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 336 ~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
.++|+|||++|+..+.+ +.+.+||+.+++........ ..+..++|+|||+.++.
T Consensus 188 ~~~~~~~~~~l~~~~~d-------------g~i~~~d~~~~~~~~~~~~~-------------~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 188 CIDISNDGTKLWTGGLD-------------NTVRSWDLREGRQLQQHDFT-------------SQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEECS-------------SCEEEEEECTTSSEEEE
T ss_pred EEEECCCCCEEEEEecC-------------CcEEEEECCCCceEeeecCC-------------CceEEEEECCCCCEEEE
Confidence 99999999999988733 38999999876543332221 23467899999997776
Q ss_pred EEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCc
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP 495 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 495 (954)
. ...+.+++|++ .+++...+..+...+..++|+|||+.|+....++ .|.++++.++ +.
T Consensus 242 ~-------------~~~~~i~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~~~~~~~--~~ 299 (337)
T 1gxr_A 242 G-------------MESSNVEVLHV---NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN----LLNAWRTPYG--AS 299 (337)
T ss_dssp E-------------ETTSCEEEEET---TSSCEEEECCCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTC--CE
T ss_pred E-------------cCCCcEEEEEC---CCCCeEEEcCCccceeEEEECCCCCEEEEecCCC----cEEEEECCCC--eE
Confidence 5 33557899996 5556666666777788999999999988776432 4666666664 22
Q ss_pred EEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 496 RILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.... .....+.. +.|+|||++++...
T Consensus 300 ~~~~-~~~~~v~~------~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 300 IFQS-KESSSVLS------CDISVDDKYIVTGS 325 (337)
T ss_dssp EEEE-ECSSCEEE------EEECTTSCEEEEEE
T ss_pred EEEe-cCCCcEEE------EEECCCCCEEEEec
Confidence 2222 22222333 78999999988776
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-17 Score=170.54 Aligned_cols=214 Identities=16% Similarity=0.116 Sum_probs=153.5
Q ss_pred EEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC
Q 002194 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (954)
+...+|. ..++|.|.+ +.|+||++||+..... .| ...+..|+++||.|+. .+.
T Consensus 7 ~~~~~g~--~~~~~~~~~-------~~~~vv~~hG~~~~~~-----------~~----~~~~~~l~~~G~~v~~---~d~ 59 (238)
T 1ufo_A 7 RLTLAGL--SVLARIPEA-------PKALLLALHGLQGSKE-----------HI----LALLPGYAERGFLLLA---FDA 59 (238)
T ss_dssp EEEETTE--EEEEEEESS-------CCEEEEEECCTTCCHH-----------HH----HHTSTTTGGGTEEEEE---CCC
T ss_pred ccccCCE--EEEEEecCC-------CccEEEEECCCcccch-----------HH----HHHHHHHHhCCCEEEE---ecC
Confidence 3344664 445677754 3699999999632110 01 1123356778999999 555
Q ss_pred CCCCCcccch---h----------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEe
Q 002194 724 IGEGDEEAND---R----------FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (954)
Q Consensus 724 ~G~G~~~~~~---~----------~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (954)
.|+|.+.... . ......+|+.++++++.+++. ++++++|||+||.+++.++.++|+.+++++..
T Consensus 60 ~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~ 136 (238)
T 1ufo_A 60 PRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFI 136 (238)
T ss_dssp TTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEES
T ss_pred CCCccCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEe
Confidence 5666654321 1 245668899999999987653 68999999999999999999999989988888
Q ss_pred ccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCC-CCCEEEEEeCCCCCCCCchHHHHHHHHHHH-hCCC-cEEE
Q 002194 791 SGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALK-GHGA-LCRL 867 (954)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~-~~g~-~~~~ 867 (954)
++..........+.. -.....+...++...+.++ ++|+|++||++|..+| .+.++++++.++ ..+. ++++
T Consensus 137 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~~~~~~~~~~ 209 (238)
T 1ufo_A 137 GSGFPMKLPQGQVVE-----DPGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVP--LARMEKTLEALRPHYPEGRLAR 209 (238)
T ss_dssp CCSSCCCCCTTCCCC-----CHHHHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTT--HHHHHHHHHHHGGGCTTCCEEE
T ss_pred cCCccchhhhhhccC-----CcccchhhcCChhhhhhhccCCcEEEEECCCCCccC--cHHHHHHHHHHhhcCCCCceEE
Confidence 765332211111100 0113345556777777888 8999999999999998 899999999999 8877 8999
Q ss_pred EEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 868 VILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 868 ~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
+++++++|.+. .+..+.+.+||.+++.
T Consensus 210 ~~~~~~~H~~~-----~~~~~~~~~~l~~~l~ 236 (238)
T 1ufo_A 210 FVEEGAGHTLT-----PLMARVGLAFLEHWLE 236 (238)
T ss_dssp EEETTCCSSCC-----HHHHHHHHHHHHHHHH
T ss_pred EEeCCCCcccH-----HHHHHHHHHHHHHHHh
Confidence 99999999874 3456788999998874
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.9e-18 Score=178.89 Aligned_cols=198 Identities=16% Similarity=0.064 Sum_probs=139.4
Q ss_pred EEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH--CCcEEEEcCC---CCCCCCC
Q 002194 653 SATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA--RGFAILGGPT---TPIIGEG 727 (954)
Q Consensus 653 ~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~G~~V~~~~~---~~~~G~G 727 (954)
..+...|+. + ..+.|+||++||..... ..|. .++..|+. .++.++.++. ....|.|
T Consensus 53 l~y~~~p~~--~--~~~~plVI~LHG~G~~~-----------~~~~----~~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G 113 (285)
T 4fhz_A 53 LTFGRRGAA--P--GEATSLVVFLHGYGADG-----------ADLL----GLAEPLAPHLPGTAFVAPDAPEPCRANGFG 113 (285)
T ss_dssp CCEEEEESC--T--TCCSEEEEEECCTTBCH-----------HHHH----TTHHHHGGGSTTEEEEEECCSEECTTSSSC
T ss_pred ceeecCCCC--C--CCCCcEEEEEcCCCCCH-----------HHHH----HHHHHHHHhCCCeEEEecCCCcccccCCCc
Confidence 334445543 2 23589999999942110 0011 12344554 3788887542 2233445
Q ss_pred Ccccch------------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 728 DEEAND------------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 728 ~~~~~~------------~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
.++.+. ........++.+.++.+.++..+|++||+|+|+|+||++|+.++.++|+.|+++|++++...
T Consensus 114 ~~Wfd~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~ 193 (285)
T 4fhz_A 114 FQWFPIPWLDGSSETAAAEGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLL 193 (285)
T ss_dssp EESSCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCS
T ss_pred ccccccccccCcccchhhHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCcc
Confidence 443211 11223356677777877777779999999999999999999999999999999999987421
Q ss_pred CCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 002194 796 RTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875 (954)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H 875 (954)
. ++.+. ...+.++|+|++||++|.+|| ++++++++++|+..|.++++++|+++||
T Consensus 194 ~-----------------~~~~~------~~~~~~~Pvl~~hG~~D~~Vp--~~~~~~~~~~L~~~g~~~~~~~y~g~gH 248 (285)
T 4fhz_A 194 A-----------------PERLA------EEARSKPPVLLVHGDADPVVP--FADMSLAGEALAEAGFTTYGHVMKGTGH 248 (285)
T ss_dssp C-----------------HHHHH------HHCCCCCCEEEEEETTCSSSC--THHHHHHHHHHHHTTCCEEEEEETTCCS
T ss_pred C-----------------chhhh------hhhhhcCcccceeeCCCCCcC--HHHHHHHHHHHHHCCCCEEEEEECCCCC
Confidence 0 00111 112346899999999999999 9999999999999999999999999999
Q ss_pred cCCCcccHHHHHHHHHHHHHHhcc
Q 002194 876 GYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 876 ~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
.+. .+.++.+.+||+++|-
T Consensus 249 ~i~-----~~~l~~~~~fL~~~Lp 267 (285)
T 4fhz_A 249 GIA-----PDGLSVALAFLKERLP 267 (285)
T ss_dssp SCC-----HHHHHHHHHHHHHHCC
T ss_pred CCC-----HHHHHHHHHHHHHHCc
Confidence 985 3457789999999984
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.4e-18 Score=171.35 Aligned_cols=184 Identities=13% Similarity=0.057 Sum_probs=123.4
Q ss_pred CccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCccc-----chhhHHHHHHHH
Q 002194 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA-----NDRFVEQLVACA 743 (954)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~-----~~~~~~~~~~D~ 743 (954)
..++||++||..... ..|. ..+..|...||.|++++..+..+++.... .........+.+
T Consensus 21 a~~~Vv~lHG~G~~~-----------~~~~----~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~~~~~~~~~~~~~i 85 (210)
T 4h0c_A 21 AKKAVVMLHGRGGTA-----------ADII----SLQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQQNQPALDSALALV 85 (210)
T ss_dssp CSEEEEEECCTTCCH-----------HHHH----GGGGTSSCTTEEEEEECCGGGCSSSSCTTSCGGGGTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCH-----------HHHH----HHHHHhCCCCeEEEeecCCCCCccccccCCCcccchHHHHHHHHHH
Confidence 368999999942110 0010 12233445799999977654433322211 111222333344
Q ss_pred HHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcc
Q 002194 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823 (954)
Q Consensus 744 ~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 823 (954)
...++.+.+. .+|++||+++|+|+||++|+.++.++|++|+++|+++|.+...... . ...
T Consensus 86 ~~~~~~~~~~-~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~~~~----~------------~~~--- 145 (210)
T 4h0c_A 86 GEVVAEIEAQ-GIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQELA----I------------GNY--- 145 (210)
T ss_dssp HHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSSSCC----G------------GGC---
T ss_pred HHHHHHHHHh-CCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCChhhh----h------------hhh---
Confidence 4444444444 4899999999999999999999999999999999998853211000 0 000
Q ss_pred cccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 824 ~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
.....++|+|++||++|.+|| +++++++++.|+..|.++++++||+++|.+. .+.++.+.+||.
T Consensus 146 -~~~~~~~Pvl~~hG~~D~~vp--~~~~~~~~~~L~~~g~~v~~~~ypg~gH~i~-----~~el~~i~~wL~ 209 (210)
T 4h0c_A 146 -KGDFKQTPVFISTGNPDPHVP--VSRVQESVTILEDMNAAVSQVVYPGRPHTIS-----GDEIQLVNNTIL 209 (210)
T ss_dssp -CBCCTTCEEEEEEEESCTTSC--HHHHHHHHHHHHHTTCEEEEEEEETCCSSCC-----HHHHHHHHHTTT
T ss_pred -hhhccCCceEEEecCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCCcC-----HHHHHHHHHHHc
Confidence 011235799999999999999 9999999999999999999999999999985 233456666654
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-17 Score=183.62 Aligned_cols=240 Identities=13% Similarity=0.077 Sum_probs=160.4
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCc--ccHHHHHHHHCCcE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI--GSTSVLLWLARGFA 714 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~la~~G~~ 714 (954)
++.+.+++.+.||..+.++.+.|........++.|+||++||.+..... |... ...++..|+++||.
T Consensus 25 ~~~~~~~~~~~dG~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~~~~~~-----------~~~~~~~~~~a~~l~~~G~~ 93 (377)
T 1k8q_A 25 YPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATN-----------WISNLPNNSLAFILADAGYD 93 (377)
T ss_dssp CCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGG-----------GSSSCTTTCHHHHHHHTTCE
T ss_pred CCceEEEeEcCCCCEEEEEEecCCCCCccccCCCCeEEEECCCCCchhh-----------hhcCCCcccHHHHHHHCCCC
Confidence 4568888999999999998886653110011247899999997533221 1111 12356678899999
Q ss_pred EEEcCCCCCCCCCCcccc-----------hhhHHHHHH-HHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 002194 715 ILGGPTTPIIGEGDEEAN-----------DRFVEQLVA-CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (954)
Q Consensus 715 V~~~~~~~~~G~G~~~~~-----------~~~~~~~~~-D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 782 (954)
|++ .+.+|+|.+... ........+ |+.++++++.+.. +.+++.++||||||.+++.++.++|+
T Consensus 94 vi~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~~--~~~~~~lvG~S~Gg~ia~~~a~~~p~ 168 (377)
T 1k8q_A 94 VWL---GNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPK 168 (377)
T ss_dssp EEE---CCCTTSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHH
T ss_pred EEE---ecCCCCCCCCCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHhc--CcCceEEEEechhhHHHHHHHhcCch
Confidence 999 666677777542 123455666 9999999987763 34689999999999999999999988
Q ss_pred ---cccEEEEeccCCCCCCCCCCCc-------------------cccchhh-----------------------------
Q 002194 783 ---LFCCGIARSGAYNRTLTPFGFQ-------------------NEDRTLW----------------------------- 811 (954)
Q Consensus 783 ---~~~a~v~~~~~~~~~~~~~~~~-------------------~~~~~~~----------------------------- 811 (954)
+++++|+++|..........+. ......+
T Consensus 169 ~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (377)
T 1k8q_A 169 LAKRIKTFYALAPVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDT 248 (377)
T ss_dssp HHTTEEEEEEESCCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCG
T ss_pred hhhhhhEEEEeCCchhcccchhHHHHHHhhccHHHHhhcCccccCcHHHHHHHHHHHhhCCccHHHHHHHHHHHhcCCCc
Confidence 8999999998754321110000 0000000
Q ss_pred -----hcHHH----------------------------------------HHhcC-cccccCCCCCCEEEEEeCCCCCCC
Q 002194 812 -----EATST----------------------------------------YVEMS-PFMSANKLKKPILLVHGEEDNNSG 845 (954)
Q Consensus 812 -----~~~~~----------------------------------------~~~~s-p~~~~~~~~~P~Lii~G~~D~~v~ 845 (954)
+.... |.... +...+.++++|+|++||++|.++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~ 328 (377)
T 1k8q_A 249 MNLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLAD 328 (377)
T ss_dssp GGSCGGGHHHHHTTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSC
T ss_pred ccCCHHHHHHHhccCCCCccHHHHHHHHHHHhcCCeeeccCCcchhhHHHcCCCCCcccCHhhCCCCEEEEEeCCCcccC
Confidence 00000 00000 122367889999999999999998
Q ss_pred CchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCC--cccHHHHHHHHHHHHHHh
Q 002194 846 TLTMQSDRFFNALKGHGALCRLVILPFESHGYAA--RESIMHVLWETDRWLQKY 897 (954)
Q Consensus 846 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~--~~~~~~~~~~i~~fl~~~ 897 (954)
++.++++++.+... .++++++++||.... .+....+.+.|.+||++|
T Consensus 329 --~~~~~~~~~~~~~~---~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 377 (377)
T 1k8q_A 329 --PHDVDLLLSKLPNL---IYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGTD 377 (377)
T ss_dssp --HHHHHHHHTTCTTE---EEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHTC
T ss_pred --HHHHHHHHHhCcCc---ccEEecCCCCceEEEecCCcHHHHHHHHHHHhccC
Confidence 88888877766432 248899999998642 356778889999999753
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.5e-18 Score=189.81 Aligned_cols=233 Identities=17% Similarity=0.190 Sum_probs=160.9
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
...+.++++. +|..++++++.+ + +.+.|+||++||+..... .+.......++++||.|+
T Consensus 133 ~~~~~~~i~~-~~~~l~~~~~~~-~-----~~~~p~vv~~HG~~~~~~--------------~~~~~~~~~~~~~g~~vi 191 (405)
T 3fnb_A 133 IPLKSIEVPF-EGELLPGYAIIS-E-----DKAQDTLIVVGGGDTSRE--------------DLFYMLGYSGWEHDYNVL 191 (405)
T ss_dssp CCCEEEEEEE-TTEEEEEEEECC-S-----SSCCCEEEEECCSSCCHH--------------HHHHHTHHHHHHTTCEEE
T ss_pred CCcEEEEEeE-CCeEEEEEEEcC-C-----CCCCCEEEEECCCCCCHH--------------HHHHHHHHHHHhCCcEEE
Confidence 3467778876 688999998843 2 223699999999521100 001112225668999999
Q ss_pred EcCCCCCCCCCCcccch-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 717 GGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
. .+.+|+|.+.... .+......|+.+++++|..+. ++|+|+|||+||++++.++.++| +++++|+.+|+.+
T Consensus 192 ~---~D~~G~G~s~~~~~~~~~~~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~ 263 (405)
T 3fnb_A 192 M---VDLPGQGKNPNQGLHFEVDARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYD 263 (405)
T ss_dssp E---ECCTTSTTGGGGTCCCCSCTHHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSC
T ss_pred E---EcCCCCcCCCCCCCCCCccHHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCC
Confidence 9 5566777774321 122244788889999987654 68999999999999999999998 8999999999876
Q ss_pred CCCC-----------CCCCcc---------ccchhhh---------------cHHHHHhcCcccccCCCCCCEEEEEeCC
Q 002194 796 RTLT-----------PFGFQN---------EDRTLWE---------------ATSTYVEMSPFMSANKLKKPILLVHGEE 840 (954)
Q Consensus 796 ~~~~-----------~~~~~~---------~~~~~~~---------------~~~~~~~~sp~~~~~~~~~P~Lii~G~~ 840 (954)
.... +..... .....|. ....+....+...+.++++|+||+||++
T Consensus 264 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~ 343 (405)
T 3fnb_A 264 VAEVFRISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAG 343 (405)
T ss_dssp HHHHHHHHCC------------------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGGCCSCEEEEEETT
T ss_pred HHHHHHHhhhhhhhCcHHHHHHHHHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhhCCCCEEEEecCC
Confidence 2110 000000 0000000 0122223344444778899999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcC--CCcccHHHHHHHHHHHHHHhccc
Q 002194 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY--AARESIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~--~~~~~~~~~~~~i~~fl~~~l~~ 900 (954)
|..+| +.++.++++.++..+.++++++++++.|.. ...++...+.+.|.+||+++++.
T Consensus 344 D~~v~--~~~~~~l~~~l~~~~~~~~l~~~~~~~h~gh~~~~~~~~~~~~~i~~fL~~~l~~ 403 (405)
T 3fnb_A 344 EDSEL--MRQSQVLYDNFKQRGIDVTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIFKK 403 (405)
T ss_dssp SCHHH--HHHHHHHHHHHHHTTCCEEEEEECTTTTCCSGGGGGGHHHHHHHHHHHHHHHHC-
T ss_pred CcCCC--hHHHHHHHHHhccCCCCceEEEEcCCccchhccccchHHHHHHHHHHHHHHHhCc
Confidence 99988 999999999999999899999997665542 24567788899999999999853
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-18 Score=179.60 Aligned_cols=201 Identities=15% Similarity=0.122 Sum_probs=147.3
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (954)
+...++-.+|..+.+.+|.|++ .+.|+||++|||.+..+.. ..| ..++..|+++||.|+.++
T Consensus 39 ~~~~i~~~~~~~~~~~~~~p~~------~~~p~vv~~HGgg~~~~~~--------~~~----~~~~~~l~~~G~~v~~~d 100 (262)
T 2pbl_A 39 ARLNLSYGEGDRHKFDLFLPEG------TPVGLFVFVHGGYWMAFDK--------SSW----SHLAVGALSKGWAVAMPS 100 (262)
T ss_dssp EEEEEESSSSTTCEEEEECCSS------SCSEEEEEECCSTTTSCCG--------GGC----GGGGHHHHHTTEEEEEEC
T ss_pred CccccccCCCCCceEEEEccCC------CCCCEEEEEcCcccccCCh--------HHH----HHHHHHHHhCCCEEEEeC
Confidence 3444554566667778888864 2379999999975322111 112 134567888999999966
Q ss_pred CCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC------CCcccEEEEeccC
Q 002194 720 TTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA------PHLFCCGIARSGA 793 (954)
Q Consensus 720 ~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~------p~~~~a~v~~~~~ 793 (954)
++ |.+. ......++|+.++++++..+.. ++++|+||||||.+++.++.+. |++++++|+++|+
T Consensus 101 ~~---~~~~-----~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~ 169 (262)
T 2pbl_A 101 YE---LCPE-----VRISEITQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPL 169 (262)
T ss_dssp CC---CTTT-----SCHHHHHHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCC
T ss_pred CC---CCCC-----CChHHHHHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCc
Confidence 64 4332 2356778999999999988753 6899999999999999999887 7899999999998
Q ss_pred CCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002194 794 YNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (954)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (954)
++.......+ ...........+...+|...+.++++|+|++||++|..++ .++++++++.++ +++++++++
T Consensus 170 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~~~-----~~~~~~~~~ 240 (262)
T 2pbl_A 170 SDLRPLLRTS--MNEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAERPAF--LDQAIWLVEAWD-----ADHVIAFEK 240 (262)
T ss_dssp CCCGGGGGST--THHHHCCCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHH--HHHHHHHHHHHT-----CEEEEETTC
T ss_pred cCchHHHhhh--hhhhhCCCHHHHHhcCcccccCCCCCCEEEEEeCCCCccc--HHHHHHHHHHhC-----CeEEEeCCC
Confidence 7642211011 0111122344556778888888899999999999999988 899999999886 689999999
Q ss_pred CCcCC
Q 002194 874 SHGYA 878 (954)
Q Consensus 874 ~H~~~ 878 (954)
+|...
T Consensus 241 ~H~~~ 245 (262)
T 2pbl_A 241 HHFNV 245 (262)
T ss_dssp CTTTT
T ss_pred CcchH
Confidence 99874
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-17 Score=165.89 Aligned_cols=180 Identities=14% Similarity=0.083 Sum_probs=132.7
Q ss_pred CccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC----------CCCCCCccc---chhh
Q 002194 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP----------IIGEGDEEA---NDRF 735 (954)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~----------~~G~G~~~~---~~~~ 735 (954)
+.| ||++||..... ..| ......|+ .||.|+.++... ..|+|.... ....
T Consensus 16 ~~p-vv~lHG~g~~~-----------~~~----~~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~ 78 (209)
T 3og9_A 16 LAP-LLLLHSTGGDE-----------HQL----VEIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLES 78 (209)
T ss_dssp SCC-EEEECCTTCCT-----------TTT----HHHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHH
T ss_pred CCC-EEEEeCCCCCH-----------HHH----HHHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHH
Confidence 478 99999953111 111 12344444 899999966321 223333211 1223
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHH
Q 002194 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATS 815 (954)
Q Consensus 736 ~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (954)
.....+++.+.++.+.++..+|+++++|+||||||.+++.++.++|++++++|+++|.......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~---------------- 142 (209)
T 3og9_A 79 LDEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDFE---------------- 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCccc----------------
Confidence 4556777778888887776789999999999999999999999999999999999986442110
Q ss_pred HHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 816 TYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 816 ~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
.......+|+|++||++|.+|| +++++++++.|+..+.++++.+|+ ++|.+. .+..+.+.+||+
T Consensus 143 --------~~~~~~~~p~li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~-~gH~~~-----~~~~~~~~~~l~ 206 (209)
T 3og9_A 143 --------QTVQLDDKHVFLSYAPNDMIVP--QKNFGDLKGDLEDSGCQLEIYESS-LGHQLT-----QEEVLAAKKWLT 206 (209)
T ss_dssp --------CCCCCTTCEEEEEECTTCSSSC--HHHHHHHHHHHHHTTCEEEEEECS-STTSCC-----HHHHHHHHHHHH
T ss_pred --------ccccccCCCEEEEcCCCCCccC--HHHHHHHHHHHHHcCCceEEEEcC-CCCcCC-----HHHHHHHHHHHH
Confidence 1123457899999999999999 999999999999999999999998 699984 345688899998
Q ss_pred Hh
Q 002194 896 KY 897 (954)
Q Consensus 896 ~~ 897 (954)
++
T Consensus 207 ~~ 208 (209)
T 3og9_A 207 ET 208 (209)
T ss_dssp HH
T ss_pred hh
Confidence 74
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-17 Score=174.07 Aligned_cols=227 Identities=13% Similarity=0.088 Sum_probs=153.9
Q ss_pred ceEEEEE-EcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 638 QKELIKY-QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 638 ~~~~~~~-~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
..+.+++ .+.+|.++.+..+.+++ .+.|+||++||+.... ..+ ........++++||.|+
T Consensus 10 ~~~~~~~~~~~~g~~l~~~~~~~~~------~~~~~vv~~HG~~~~~-----------~~~--~~~~~~~~l~~~g~~v~ 70 (270)
T 3llc_A 10 ETHAITVGQGSDARSIAALVRAPAQ------DERPTCIWLGGYRSDM-----------TGT--KALEMDDLAASLGVGAI 70 (270)
T ss_dssp EEEEEEESSGGGCEEEEEEEECCSS------TTSCEEEEECCTTCCT-----------TSH--HHHHHHHHHHHHTCEEE
T ss_pred CcceEEEeeccCcceEEEEeccCCC------CCCCeEEEECCCcccc-----------ccc--hHHHHHHHHHhCCCcEE
Confidence 3455555 56699999888776542 1268999999963110 000 01124556678999999
Q ss_pred EcCCCCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh---CC---CcccEEE
Q 002194 717 GGPTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH---AP---HLFCCGI 788 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~---~p---~~~~a~v 788 (954)
. .+..|+|.+... ........+|+.++++++. .++++++|||+||.+++.++.+ +| ++++++|
T Consensus 71 ~---~d~~G~G~s~~~~~~~~~~~~~~d~~~~~~~l~------~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~i 141 (270)
T 3llc_A 71 R---FDYSGHGASGGAFRDGTISRWLEEALAVLDHFK------PEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMV 141 (270)
T ss_dssp E---ECCTTSTTCCSCGGGCCHHHHHHHHHHHHHHHC------CSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEE
T ss_pred E---eccccCCCCCCccccccHHHHHHHHHHHHHHhc------cCCeEEEEeChHHHHHHHHHHHHHhccccccccceeE
Confidence 9 555677776443 2345667888888888873 5689999999999999999999 99 8999999
Q ss_pred EeccCCCCCCCC-C-CCcc--------------------c-cchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCC
Q 002194 789 ARSGAYNRTLTP-F-GFQN--------------------E-DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG 845 (954)
Q Consensus 789 ~~~~~~~~~~~~-~-~~~~--------------------~-~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~ 845 (954)
+++|..+..... + .+.. . ..........+........+.++++|+|++||++|..+|
T Consensus 142 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~v~ 221 (270)
T 3llc_A 142 LIAPAPDFTSDLIEPLLGDRERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVP 221 (270)
T ss_dssp EESCCTTHHHHTTGGGCCHHHHHHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCCCCSCEEEEEETTCSSSC
T ss_pred EecCcccchhhhhhhhhhhhhhhhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhcCCCCEEEEecCCCCCCC
Confidence 999875421100 0 0000 0 000001112233334455677889999999999999998
Q ss_pred CchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 846 TLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 846 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.+.+.++++.+.. .+++++++++++|.+...+....+.+.+.+||++
T Consensus 222 --~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~~ 268 (270)
T 3llc_A 222 --YQHALKLVEHLPA--DDVVLTLVRDGDHRLSRPQDIDRMRNAIRAMIEP 268 (270)
T ss_dssp --HHHHHHHHHTSCS--SSEEEEEETTCCSSCCSHHHHHHHHHHHHHHHC-
T ss_pred --HHHHHHHHHhcCC--CCeeEEEeCCCcccccccccHHHHHHHHHHHhcC
Confidence 8888888877643 3589999999999876556666666777777654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-15 Score=169.81 Aligned_cols=357 Identities=14% Similarity=0.091 Sum_probs=215.6
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
+.|++|++.. ++.... +..+..+..++|||||++|+++.. ....|+++|+.+++.......+..
T Consensus 12 ~~v~v~d~~~----~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~--------~d~~i~v~d~~~~~~~~~~~~~~~-- 75 (391)
T 1l0q_A 12 DNISVIDVTS----NKVTAT--IPVGSNPMGAVISPDGTKVYVANA--------HSNDVSIIDTATNNVIATVPAGSS-- 75 (391)
T ss_dssp TEEEEEETTT----TEEEEE--EECSSSEEEEEECTTSSEEEEEEG--------GGTEEEEEETTTTEEEEEEECSSS--
T ss_pred CEEEEEECCC----CeEEEE--eecCCCcceEEECCCCCEEEEECC--------CCCeEEEEECCCCeEEEEEECCCC--
Confidence 4799999854 333222 222335788999999999877642 246899999988887665554442
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
+..++|+|||+.|+++.. ....|+++|+
T Consensus 76 ---v~~~~~spdg~~l~~~~~------------------------------------------------~~~~v~v~d~~ 104 (391)
T 1l0q_A 76 ---PQGVAVSPDGKQVYVTNM------------------------------------------------ASSTLSVIDTT 104 (391)
T ss_dssp ---EEEEEECTTSSEEEEEET------------------------------------------------TTTEEEEEETT
T ss_pred ---ccceEECCCCCEEEEEEC------------------------------------------------CCCEEEEEECC
Confidence 678999999999987610 1245888898
Q ss_pred CCceeEcCC-CccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTVKEIGP-PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~~~l~~-~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
+++...... ...+..++|+|||++|+++... .+.+++||+.+++........ ..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------~~~v~~~d~~~~~~~~~~~~~-------------~~ 159 (391)
T 1l0q_A 105 SNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG------------DKTVSVINTVTKAVINTVSVG-------------RS 159 (391)
T ss_dssp TTEEEEEEECSSSEEEEEECTTSSEEEEEETT------------TTEEEEEETTTTEEEEEEECC-------------SS
T ss_pred CCeEEEEEeCCCCcceEEECCCCCEEEEEeCC------------CCEEEEEECCCCcEEEEEecC-------------CC
Confidence 775544333 3567889999999999877633 238999999876554332211 23
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
+..+.|+|||+.+++. . ...+.|++|++ .+++..........+..++|+|||+.|+....... .
T Consensus 160 ~~~~~~~~dg~~l~~~-~-----------~~~~~v~~~d~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~-~ 223 (391)
T 1l0q_A 160 PKGIAVTPDGTKVYVA-N-----------FDSMSISVIDT---VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKY-F 223 (391)
T ss_dssp EEEEEECTTSSEEEEE-E-----------TTTTEEEEEET---TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSS-C
T ss_pred cceEEECCCCCEEEEE-e-----------CCCCEEEEEEC---CCCeEEEEEecCCCccceEECCCCCEEEEEecCcC-C
Confidence 4578999999976554 1 22457999996 44444444444556678999999999988865211 2
Q ss_pred eEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECC
Q 002194 481 TRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN 560 (954)
Q Consensus 481 ~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 560 (954)
..|+++|+.++ +......... .... +.|+|||+++++... ....|++||++
T Consensus 224 ~~v~~~d~~~~--~~~~~~~~~~-~~~~------~~~s~dg~~l~~s~~--------------------~d~~v~v~d~~ 274 (391)
T 1l0q_A 224 NTVSMIDTGTN--KITARIPVGP-DPAG------IAVTPDGKKVYVALS--------------------FXNTVSVIDTA 274 (391)
T ss_dssp CEEEEEETTTT--EEEEEEECCS-SEEE------EEECTTSSEEEEEET--------------------TTTEEEEEETT
T ss_pred CcEEEEECCCC--eEEEEEecCC-CccE------EEEccCCCEEEEEcC--------------------CCCEEEEEECC
Confidence 56888888875 3333322221 1222 789999998876651 12359999999
Q ss_pred CCCeEEEeccCccccc-ceeEEeccCC---ccccccccC--C------EEEEEEecCCCCceEEEEECCCCceeEeecCC
Q 002194 561 TGSKERIWESDKEKYY-ETTVALMSDQ---TEGDLYLNQ--L------KILTSKESKTENTQYYIQSWPDKKSCQITDFP 628 (954)
Q Consensus 561 ~g~~~~l~~~~~~~~~-~~~~~~~~~~---~~~~~s~dg--~------~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~ 628 (954)
+++...........+. .......... ....|+.+. . .+.+. +.......|+|+..+|.... ..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~--~~~~~~~~~~W~~~~g~~~~--~~- 349 (391)
T 1l0q_A 275 TNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFT--DLSKDATEWKWDFGDGSSSK--KQ- 349 (391)
T ss_dssp TTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEE--ECCBSCSEEEEECSSSCEEC--SS-
T ss_pred CCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEE--eCCCCceEEEEECCCCcccC--cC-
Confidence 9887655443321110 0000110000 011233322 1 13333 23334568899987776422 11
Q ss_pred CCCCCcC--CCceEEEEEEcCCC--eEEEEEEEcCCC
Q 002194 629 HPYPQLA--SLQKELIKYQRKDG--VQLSATLYLPPG 661 (954)
Q Consensus 629 ~~~~~~~--~~~~~~~~~~~~~g--~~l~~~l~~P~~ 661 (954)
.+...+. ..-...+++.+.+| .+++...+.+++
T Consensus 350 ~~~~~~~~~g~y~~~~~~~~~~g~~~~~~~~~v~~~~ 386 (391)
T 1l0q_A 350 NPTHTYSETGIYTVRLTVSNSNGTDSQISTVNVVLKG 386 (391)
T ss_dssp SCEECCSSCEEEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred CCeEEeCCCceEEEEEEEECCCCcEEEEEEEEEEcCC
Confidence 1211222 12245667778888 356666666543
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-18 Score=185.45 Aligned_cols=226 Identities=16% Similarity=0.103 Sum_probs=154.4
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH-HCCcEEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAIL 716 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~ 716 (954)
..+.+++++.+| .+.+++| +. .++.|+||++|||.+..+. ...+ ..+...|+ ..||.|+
T Consensus 55 ~~~~~~i~~~~g-~i~~~~y-~~------~~~~p~vv~~HGgg~~~g~--------~~~~----~~~~~~la~~~g~~Vv 114 (311)
T 1jji_A 55 RVEDRTIKGRNG-DIRVRVY-QQ------KPDSPVLVYYHGGGFVICS--------IESH----DALCRRIARLSNSTVV 114 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEE-ES------SSSEEEEEEECCSTTTSCC--------TGGG----HHHHHHHHHHHTSEEE
T ss_pred eEEEEEecCCCC-cEEEEEE-cC------CCCceEEEEECCcccccCC--------hhHh----HHHHHHHHHHhCCEEE
Confidence 478888988887 8999998 42 2348999999998543221 1111 23566677 5899999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhCCCc----ccEEEE
Q 002194 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAPHL----FCCGIA 789 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~----~~a~v~ 789 (954)
.+++ +|+|.+.. +....|+.++++|+.++ ..+|+++|+|+|+|+||++|+.++.+.+++ ++++|+
T Consensus 115 ~~dy---rg~g~~~~-----p~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl 186 (311)
T 1jji_A 115 SVDY---RLAPEHKF-----PAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQIL 186 (311)
T ss_dssp EEEC---CCTTTSCT-----THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred EecC---CCCCCCCC-----CCcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 9555 45555432 34567888999998875 247888999999999999999999887655 999999
Q ss_pred eccCCCCCCCCCCC---------cccc--chhhhc----H--HHHHhcCccc-ccCCCCCCEEEEEeCCCCCCCCchHHH
Q 002194 790 RSGAYNRTLTPFGF---------QNED--RTLWEA----T--STYVEMSPFM-SANKLKKPILLVHGEEDNNSGTLTMQS 851 (954)
Q Consensus 790 ~~~~~~~~~~~~~~---------~~~~--~~~~~~----~--~~~~~~sp~~-~~~~~~~P~Lii~G~~D~~v~~~~~~~ 851 (954)
++|..+.......+ .... ...|.. . ......+|+. .+..+ .|+||+||+.|..+ .++
T Consensus 187 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~-~P~li~~G~~D~l~----~~~ 261 (311)
T 1jji_A 187 IYPVVNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENL-PPALIITAEYDPLR----DEG 261 (311)
T ss_dssp ESCCCCSSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTC-CCEEEEEEEECTTH----HHH
T ss_pred eCCccCCCCCCccHHHhcCCCccCCHHHHHHHHHHhCCCCccCCCcccCcccccccCC-ChheEEEcCcCcch----HHH
Confidence 99987743211000 0000 000000 0 0001123332 12222 59999999999874 567
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCCc----ccHHHHHHHHHHHHHH
Q 002194 852 DRFFNALKGHGALCRLVILPFESHGYAAR----ESIMHVLWETDRWLQK 896 (954)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~fl~~ 896 (954)
.+++++|+..|+++++++|++++|.+... +....+.+.+.+||++
T Consensus 262 ~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 262 EVFGQMLRRAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEEECCCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 88999999999999999999999987532 3456777888888864
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-17 Score=169.73 Aligned_cols=198 Identities=13% Similarity=0.092 Sum_probs=143.0
Q ss_pred EEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCC--------------
Q 002194 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT-------------- 721 (954)
Q Consensus 656 l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~-------------- 721 (954)
++.|+. +.+.|+||++||+..... .| ......|+++||.|++++..
T Consensus 14 ~~~p~~-----~~~~~~vv~lHG~~~~~~-----------~~----~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~ 73 (232)
T 1fj2_A 14 AIVPAA-----RKATAAVIFLHGLGDTGH-----------GW----AEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPS 73 (232)
T ss_dssp EEECCS-----SCCSEEEEEECCSSSCHH-----------HH----HHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEEC
T ss_pred cccCCC-----CCCCceEEEEecCCCccc-----------hH----HHHHHHHhcCCcEEEecCCCcccccccccccccc
Confidence 456654 235799999999632100 01 12333445579999996332
Q ss_pred --CCCCCCCcc-cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC
Q 002194 722 --PIIGEGDEE-ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (954)
Q Consensus 722 --~~~G~G~~~-~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (954)
+..|+.... ..........+|+.++++++.+ ..+|+++++++|||+||.+++.++.++|++++++|+++|..+...
T Consensus 74 w~d~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~ 152 (232)
T 1fj2_A 74 WFDIIGLSPDSQEDESGIKQAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRA 152 (232)
T ss_dssp SSCBCCCSTTCCBCHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGG
T ss_pred ccccccCCcccccccHHHHHHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCc
Confidence 334441111 1223355677888888888887 557889999999999999999999999999999999998654211
Q ss_pred CCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc--EEEEEeCCCCCc
Q 002194 799 TPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL--CRLVILPFESHG 876 (954)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~--~~~~~~~~~~H~ 876 (954)
. + ......+.++++|+|++||++|..++ .+.++++++.++..+.+ ++++++++++|.
T Consensus 153 ~---~----------------~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~H~ 211 (232)
T 1fj2_A 153 S---F----------------PQGPIGGANRDISILQCHGDCDPLVP--LMFGSLTVEKLKTLVNPANVTFKTYEGMMHS 211 (232)
T ss_dssp G---S----------------CSSCCCSTTTTCCEEEEEETTCSSSC--HHHHHHHHHHHHHHSCGGGEEEEEETTCCSS
T ss_pred c---c----------------cccccccccCCCCEEEEecCCCccCC--HHHHHHHHHHHHHhCCCCceEEEEeCCCCcc
Confidence 0 0 00112345678999999999999998 89999999999988854 999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhccc
Q 002194 877 YAARESIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 877 ~~~~~~~~~~~~~i~~fl~~~l~~ 900 (954)
+. .+..+.+.+||++++..
T Consensus 212 ~~-----~~~~~~i~~~l~~~l~~ 230 (232)
T 1fj2_A 212 SC-----QQEMMDVKQFIDKLLPP 230 (232)
T ss_dssp CC-----HHHHHHHHHHHHHHSCC
T ss_pred cC-----HHHHHHHHHHHHHhcCC
Confidence 83 34458899999999853
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.6e-17 Score=196.65 Aligned_cols=330 Identities=11% Similarity=0.029 Sum_probs=198.5
Q ss_pred hHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccC-CCCCCce
Q 002194 101 EIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP-DGKLGQE 179 (954)
Q Consensus 101 ~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-~g~~~~~ 179 (954)
++.+++.....+ .++|||++++|...+ .+... ..||+.+... ++ +..
T Consensus 101 ~~~~~~~~~~~~--~p~pdG~~~~~~~~~----------------------~~~~~------~~l~~~~~~~~~~--~~~ 148 (741)
T 1yr2_A 101 RMKALIDYERFG--LPQRRGASVFYSWNS----------------------GLMNQ------SQLLVRPADAPVG--TKG 148 (741)
T ss_dssp HHHHHSCCCEEC--CCEEETTEEEEEEEC----------------------SSCSS------CEEEEEETTSCTT--CCC
T ss_pred HHHHhhcccccC--CCEEECCEEEEEEEc----------------------CCCeE------EEEEEEcCCccCC--CCC
Confidence 344555543433 346999999999875 11111 3678777531 02 344
Q ss_pred eeeec---CCCCC--cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecC
Q 002194 180 IEIQG---FPDGA--KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN 254 (954)
Q Consensus 180 ~~lt~---~~~~~--~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD 254 (954)
+.|.. ++.+. .+..++|||||++|||..+.. +++..+||++|+++|+..+.+..... +..++||||
T Consensus 149 ~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~----G~e~~~i~v~dl~tg~~~~~~~~~~~-----~~~~~wspD 219 (741)
T 1yr2_A 149 RVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDG----GSDWRTVKFVGVADGKPLADELKWVK-----FSGLAWLGN 219 (741)
T ss_dssp EEEECGGGCC----EEEEEEEECTTSSEEEEEEEET----TCSEEEEEEEETTTCCEEEEEEEEEE-----SCCCEESTT
T ss_pred EEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCC----CCceEEEEEEECCCCCCCCccCCCce-----eccEEEECC
Confidence 55421 12222 567899999999999998643 44457999999999987654221111 357999999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc--eeEcCCC
Q 002194 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGPP 331 (954)
Q Consensus 255 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~--~~~l~~~ 331 (954)
+.|+|+....... +.. +... ....+||++++ ++. .+.+...
T Consensus 220 -~~l~~~~~~~~~~---------~~~------------------~~~~--------~~~~~v~~~~lgt~~~~~~lv~~~ 263 (741)
T 1yr2_A 220 -DALLYSRFAEPKE---------GQA------------------FQAL--------NYNQTVWLHRLGTPQSADQPVFAT 263 (741)
T ss_dssp -SEEEEEECCCC-----------------------------------C--------CCCCEEEEEETTSCGGGCEEEECC
T ss_pred -CEEEEEEecCccc---------ccc------------------cccC--------CCCCEEEEEECCCCchhCEEEecc
Confidence 9999984322110 000 0000 02346889998 554 2334332
Q ss_pred ----ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc--e-EEEeccCCCcccCCccccccccCccce
Q 002194 332 ----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--F-VRELCDLPLAEDIPIAFNSVRKGMRSI 404 (954)
Q Consensus 332 ----~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~--~-~~~l~~~~~~~~~p~~~~~~~~g~~~~ 404 (954)
..+.++.|||||++|++.+..... ...+++++|++++ + .+.|..... +...+
T Consensus 264 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~--------~~~~l~~~d~~~~~~~~~~~l~~~~~-------------~~~~~ 322 (741)
T 1yr2_A 264 PELPKRGHGASVSSDGRWVVITSSEGTD--------PVNTVHVARVTNGKIGPVTALIPDLK-------------AQWDF 322 (741)
T ss_dssp TTCTTCEEEEEECTTSCEEEEEEECTTC--------SCCEEEEEEEETTEECCCEEEECSSS-------------SCEEE
T ss_pred CCCCeEEEEEEECCCCCEEEEEEEccCC--------CcceEEEEECCCCCCcccEEecCCCC-------------ceEEE
Confidence 246789999999999998854311 1348999999876 5 566654321 11223
Q ss_pred eeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCC--CCceEEeec-ccccCceeeccCCceEEEEEeccccce
Q 002194 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG--EGPEILHKL-DLRYGGISWCDDSLALVYESWYKTRRT 481 (954)
Q Consensus 405 ~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g--~~~~~l~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~ 481 (954)
++|||+.|++..+.. .....|+++++ ++ ++.+.+... +..+..++|+ +..|++....++ ..
T Consensus 323 -~~~dg~~l~~~s~~~---------~~~~~l~~~d~---~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg-~~ 386 (741)
T 1yr2_A 323 -VDGVGDQLWFVSGDG---------APLKKIVRVDL---SGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDA-KS 386 (741)
T ss_dssp -EEEETTEEEEEECTT---------CTTCEEEEEEC---SSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETT-EE
T ss_pred -EeccCCEEEEEECCC---------CCCCEEEEEeC---CCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECC-EE
Confidence 569999988874321 22568999996 44 244555433 2334456665 556777665554 37
Q ss_pred EEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCC
Q 002194 482 RTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINT 561 (954)
Q Consensus 482 ~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 561 (954)
+||+++++++ ....+.-.....+.. ++++|||+.++|..... .....||+||+++
T Consensus 387 ~l~~~~~~g~--~~~~l~~~~~~~v~~------~~~s~d~~~l~~~~ss~-----------------~~P~~i~~~d~~t 441 (741)
T 1yr2_A 387 QVLAFDLDGK--PAGAVSLPGIGSASG------LSGRPGDRHAYLSFSSF-----------------TQPATVLALDPAT 441 (741)
T ss_dssp EEEEEETTSC--EEEECBCSSSCEEEE------EECCBTCSCEEEEEEET-----------------TEEEEEEEEETTT
T ss_pred EEEEEeCCCC--ceeeccCCCCeEEEE------eecCCCCCEEEEEEcCC-----------------CCCCEEEEEECCC
Confidence 8999998653 233332111122222 67889999888876322 1234599999999
Q ss_pred CCeEEEec
Q 002194 562 GSKERIWE 569 (954)
Q Consensus 562 g~~~~l~~ 569 (954)
++.+.+..
T Consensus 442 g~~~~l~~ 449 (741)
T 1yr2_A 442 AKTTPWEP 449 (741)
T ss_dssp TEEEECSC
T ss_pred CcEEEEec
Confidence 98766654
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.9e-18 Score=190.71 Aligned_cols=228 Identities=12% Similarity=0.061 Sum_probs=152.4
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
...+.++++. +|..++++++.|++ .++.|+||++||+.... ..........++++||.|+
T Consensus 166 ~~~~~v~i~~-~g~~l~~~~~~P~~-----~~~~P~vv~~hG~~~~~--------------~~~~~~~~~~l~~~G~~V~ 225 (415)
T 3mve_A 166 YIIKQLEIPF-EKGKITAHLHLTNT-----DKPHPVVIVSAGLDSLQ--------------TDMWRLFRDHLAKHDIAML 225 (415)
T ss_dssp SEEEEEEEEC-SSSEEEEEEEESCS-----SSCEEEEEEECCTTSCG--------------GGGHHHHHHTTGGGTCEEE
T ss_pred CCeEEEEEEE-CCEEEEEEEEecCC-----CCCCCEEEEECCCCccH--------------HHHHHHHHHHHHhCCCEEE
Confidence 4577888886 88899999999975 23589999999963110 0011123456778999999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC
Q 002194 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (954)
. .+.+|+|.+...... .........+++++.+...+|+++|+|+|||+||++++.++..+|++++++|+++|+.+.
T Consensus 226 ~---~D~~G~G~s~~~~~~-~~~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~ 301 (415)
T 3mve_A 226 T---VDMPSVGYSSKYPLT-EDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHD 301 (415)
T ss_dssp E---ECCTTSGGGTTSCCC-SCTTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSH
T ss_pred E---ECCCCCCCCCCCCCC-CCHHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCcccc
Confidence 9 555667766432110 011122256778888887788999999999999999999999998999999999987541
Q ss_pred CCCCCC----Cccc---------cchhhhcH---HHHHhcCcccc----cCCCCCCEEEEEeCCCCCCCCchHHHHHHHH
Q 002194 797 TLTPFG----FQNE---------DRTLWEAT---STYVEMSPFMS----ANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (954)
Q Consensus 797 ~~~~~~----~~~~---------~~~~~~~~---~~~~~~sp~~~----~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (954)
...... .... ........ ..+..+++... +.++++|+|++||++|.++| ..++..+++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp--~~~~~~l~~ 379 (415)
T 3mve_A 302 IFASPQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSP--YSDNQMVAF 379 (415)
T ss_dssp HHHCHHHHTTSCHHHHHHHHHHTTCSSBCHHHHHHHGGGGCTTTTTTTTSSCBSSCEEEEEETTCSSSC--HHHHHHHHH
T ss_pred ccccHHHHHHhHHHHHHHHHHHhCCCccCHHHHHHHHhhcCcccccccccCCCCCCEEEEEeCCCCCCC--HHHHHHHHH
Confidence 110000 0000 00000000 11222333221 45788999999999999998 888777665
Q ss_pred HHHhCCCcEEEEEeCC-CCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 857 ALKGHGALCRLVILPF-ESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 857 ~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
.+.+++++++++ ..|. ........+.+||++++.
T Consensus 380 ----~~~~~~l~~i~g~~~h~-----~~~~~~~~i~~fL~~~L~ 414 (415)
T 3mve_A 380 ----FSTYGKAKKISSKTITQ-----GYEQSLDLAIKWLEDELL 414 (415)
T ss_dssp ----TBTTCEEEEECCCSHHH-----HHHHHHHHHHHHHHHHHT
T ss_pred ----hCCCceEEEecCCCccc-----chHHHHHHHHHHHHHHhc
Confidence 456679999998 2232 456778899999999874
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-16 Score=169.36 Aligned_cols=268 Identities=13% Similarity=0.141 Sum_probs=175.7
Q ss_pred CCCCceecCC----CCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecC
Q 002194 110 PLPALSFSPQ----RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF 185 (954)
Q Consensus 110 ~~~~~~~SPD----G~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~ 185 (954)
.+..++|||+ |+.|+..+.+ ..|.||++.. +.......+.+
T Consensus 34 ~V~~v~~~~~~~~~~~~l~tgs~D---------------------------------~~v~vW~~~~-~~~~~~~~l~g- 78 (321)
T 3ow8_A 34 AIWSVAWGTNKKENSETVVTGSLD---------------------------------DLVKVWKWRD-ERLDLQWSLEG- 78 (321)
T ss_dssp CEEEEEEC-------CEEEEEETT---------------------------------SCEEEEEEET-TEEEEEEEECC-
T ss_pred cEEEEEEecCCCCCCCEEEEEcCC---------------------------------CCEEEEECCC-CCeeeeeeecc-
Confidence 5678899885 5678877765 5788999853 11001112333
Q ss_pred CCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCC
Q 002194 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (954)
Q Consensus 186 ~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~ 265 (954)
+...+..+.|+|+++.++..+ ....|.++|+.+++........... +..++|+|||+.|+...
T Consensus 79 -h~~~v~~~~~~~~~~~l~s~s---------~D~~i~lWd~~~~~~~~~~~~~~~~----~~~~~~spdg~~l~~g~--- 141 (321)
T 3ow8_A 79 -HQLGVVSVDISHTLPIAASSS---------LDAHIRLWDLENGKQIKSIDAGPVD----AWTLAFSPDSQYLATGT--- 141 (321)
T ss_dssp -CSSCEEEEEECSSSSEEEEEE---------TTSEEEEEETTTTEEEEEEECCTTC----CCCEEECTTSSEEEEEC---
T ss_pred -CCCCEEEEEECCCCCEEEEEe---------CCCcEEEEECCCCCEEEEEeCCCcc----EEEEEECCCCCEEEEEc---
Confidence 223688899999999888754 2567888898887664443322222 55799999999998761
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-ccccccccCCC
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPD 342 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~-~~~~~~~~SpD 342 (954)
....+.++++ +++ ...+... ..+..++||||
T Consensus 142 ----------------------------------------------~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spd 175 (321)
T 3ow8_A 142 ----------------------------------------------HVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPD 175 (321)
T ss_dssp ----------------------------------------------TTSEEEEEETTTCSEEEEEECSSSCEEEEEECTT
T ss_pred ----------------------------------------------CCCcEEEEEcCCCceeEEecCCCceEEEEEECCC
Confidence 1234667777 553 3333333 56788999999
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
|++|+..+.+ +.|.+||+.+++. ..+..+ ...+..++|+|||+.|+..
T Consensus 176 g~~lasg~~d-------------g~i~iwd~~~~~~~~~~~~h-------------~~~v~~l~~spd~~~l~s~----- 224 (321)
T 3ow8_A 176 GKYLASGAID-------------GIINIFDIATGKLLHTLEGH-------------AMPIRSLTFSPDSQLLVTA----- 224 (321)
T ss_dssp SSEEEEEETT-------------SCEEEEETTTTEEEEEECCC-------------SSCCCEEEECTTSCEEEEE-----
T ss_pred CCEEEEEcCC-------------CeEEEEECCCCcEEEEEccc-------------CCceeEEEEcCCCCEEEEE-----
Confidence 9999988743 3899999986654 333322 1345789999999976655
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecC
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 501 (954)
+..+.|.+|++ ..+.....+..+...+..++|+|||+.|+..+.++. |.++|+.++ +.......
T Consensus 225 --------s~dg~i~iwd~--~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~----v~iwd~~~~--~~~~~~~~ 288 (321)
T 3ow8_A 225 --------SDDGYIKIYDV--QHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS----VKVWDVGTR--TCVHTFFD 288 (321)
T ss_dssp --------CTTSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC----EEEEETTTT--EEEEEECC
T ss_pred --------cCCCeEEEEEC--CCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc----EEEEeCCCC--EEEEEEcC
Confidence 44567899996 233334455666677888999999999888765543 444455553 33333333
Q ss_pred CCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 502 SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 502 ~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+...+.. ++|+|||++|+...
T Consensus 289 h~~~v~~------v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 289 HQDQVWG------VKYNGNGSKIVSVG 309 (321)
T ss_dssp CSSCEEE------EEECTTSSEEEEEE
T ss_pred CCCcEEE------EEECCCCCEEEEEe
Confidence 4444444 88999999988765
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-17 Score=170.25 Aligned_cols=203 Identities=15% Similarity=0.075 Sum_probs=144.9
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---h-hHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---R-FVEQLVACAEA 745 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~-~~~~~~~D~~~ 745 (954)
.|+||++||..... ..| ...+..|+++||.|++ .+..|+|.+.... . ......+|+.+
T Consensus 22 ~~~vv~~HG~~~~~-----------~~~----~~~~~~l~~~G~~v~~---~d~~g~g~s~~~~~~~~~~~~~~~~d~~~ 83 (251)
T 3dkr_A 22 DTGVVLLHAYTGSP-----------NDM----NFMARALQRSGYGVYV---PLFSGHGTVEPLDILTKGNPDIWWAESSA 83 (251)
T ss_dssp SEEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEE---CCCTTCSSSCTHHHHHHCCHHHHHHHHHH
T ss_pred CceEEEeCCCCCCH-----------HHH----HHHHHHHHHCCCEEEe---cCCCCCCCCChhhhcCcccHHHHHHHHHH
Confidence 68899999963211 111 3467778889999999 6667788774321 2 34566889999
Q ss_pred HHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccc-------------cch---
Q 002194 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE-------------DRT--- 809 (954)
Q Consensus 746 av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~-------------~~~--- 809 (954)
+++++.++ .++++++|||+||.+++.++.++|++++++++.+|.............. ...
T Consensus 84 ~i~~l~~~----~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (251)
T 3dkr_A 84 AVAHMTAK----YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLKYAEYMNRLAGKSDESTQIL 159 (251)
T ss_dssp HHHHHHTT----CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHh----cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHHHHHHHHHHhhcccCcchhhHH
Confidence 99999876 5699999999999999999999999999999998876532110000000 000
Q ss_pred --hhhcHHHHHhc--CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHH
Q 002194 810 --LWEATSTYVEM--SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH 885 (954)
Q Consensus 810 --~~~~~~~~~~~--sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~ 885 (954)
.......+... .....+.++++|+|++||++|..+| +..+.++++.+... .+++++++++++|.+....+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~ 236 (251)
T 3dkr_A 160 AYLPGQLAAIDQFATTVAADLNLVKQPTFIGQAGQDELVD--GRLAYQLRDALINA-ARVDFHWYDDAKHVITVNSAHHA 236 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSBC--TTHHHHHHHHCTTC-SCEEEEEETTCCSCTTTSTTHHH
T ss_pred hhhHHHHHHHHHHHHHHhccccccCCCEEEEecCCCcccC--hHHHHHHHHHhcCC-CCceEEEeCCCCcccccccchhH
Confidence 00000000000 1234567789999999999999998 89999999988764 56899999999999865555888
Q ss_pred HHHHHHHHHHHh
Q 002194 886 VLWETDRWLQKY 897 (954)
Q Consensus 886 ~~~~i~~fl~~~ 897 (954)
+.+.+.+||+++
T Consensus 237 ~~~~i~~fl~~~ 248 (251)
T 3dkr_A 237 LEEDVIAFMQQE 248 (251)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.5e-16 Score=185.23 Aligned_cols=408 Identities=10% Similarity=0.058 Sum_probs=213.8
Q ss_pred CCCCceecCCCCEEEEEecCCC-----------CCccccccccceeeeeeecCCCCC-CcceeeEeceEEEEccCCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRAL-----------PPLEELARPEEKLAGLRIDGKCNT-RSRMSFYTGIGIHQLFPDGKLG 177 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~l~~~~~~g~~~ 177 (954)
.+..++|||||++||....+.. ..+..+..+...+..+.+++++.. ....+.+..|.+|+... +
T Consensus 105 ~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~----~ 180 (611)
T 1nr0_A 105 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP----F 180 (611)
T ss_dssp CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT----B
T ss_pred ceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC----C
Confidence 5678999999999998765311 112233444555667778877643 34444457899999743 2
Q ss_pred c-eeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCC---CccccccccceeEec
Q 002194 178 Q-EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP---DIYLNAIFDNFVWVN 253 (954)
Q Consensus 178 ~-~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~---~~~~~~~~~~~~wsp 253 (954)
+ ...+.+ +...+..++|||||+.|+... ....|.++|+.+++........ .......+..++|+|
T Consensus 181 ~~~~~l~~--H~~~V~~v~fspdg~~las~s---------~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp 249 (611)
T 1nr0_A 181 KFKSTFGE--HTKFVHSVRYNPDGSLFASTG---------GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249 (611)
T ss_dssp EEEEEECC--CSSCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred eEeeeecc--ccCceEEEEECCCCCEEEEEE---------CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC
Confidence 2 223333 224688999999999988765 2456777788777654433110 001122377899999
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhh-hccCcccc-ccccccccceEEEEEe-CCcee-EcC
Q 002194 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD-LLKDEYDE-DLFDYYATTQLVLVSL-DGTVK-EIG 329 (954)
Q Consensus 254 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d-~l~~~~d~-~~~~~~~~~~l~~~~~-~G~~~-~l~ 329 (954)
||+.|+....+..-.... ...+.....-... ....+ .+....++ ..+.......+..++. ++... .+.
T Consensus 250 dg~~l~s~s~D~~v~lWd---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~ 321 (611)
T 1nr0_A 250 DGTKIASASADKTIKIWN---VATLKVEKTIPVG-----TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY 321 (611)
T ss_dssp TSSEEEEEETTSEEEEEE---TTTTEEEEEEECC-----SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEe---CCCCceeeeecCC-----CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc
Confidence 999998774322111000 0000000000000 00000 00000000 0111112334556666 55433 233
Q ss_pred CC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEecc--CCCc--------cc---------
Q 002194 330 PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD--LPLA--------ED--------- 389 (954)
Q Consensus 330 ~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~--~~~~--------~~--------- 389 (954)
.. ..+..++|||||++|+..+.+. .+.+||+.+++...+.. +... ..
T Consensus 322 gh~~~v~~l~~spdg~~l~s~s~D~-------------~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~ 388 (611)
T 1nr0_A 322 GHNKAITALSSSADGKTLFSADAEG-------------HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDD 388 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTS-------------CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTT
T ss_pred CCCCCEEEEEEeCCCCEEEEEeCCC-------------cEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCC
Confidence 33 6788999999999999887443 67778776543322210 0000 00
Q ss_pred ------------------------CCc--cc--c-----------------------ccccCccceeeccCCCCceEEEE
Q 002194 390 ------------------------IPI--AF--N-----------------------SVRKGMRSINWRSDKPSTLYWAE 418 (954)
Q Consensus 390 ------------------------~p~--~~--~-----------------------~~~~g~~~~~wspDg~~i~~~~~ 418 (954)
.+. .+ + .....+..++|||||+.++..
T Consensus 389 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasg-- 466 (611)
T 1nr0_A 389 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVG-- 466 (611)
T ss_dssp EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEE--
T ss_pred ceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEe--
Confidence 000 00 0 000112345666666654443
Q ss_pred eccCCCccccccCCCeEEEEecCCCCCCCceEE--eecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcE
Q 002194 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (954)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (954)
+..+.|.+|++ .++....+ ..+...+..++|||||+.|+..+.+.. .+||.+... + +..
T Consensus 467 -----------s~D~~v~lwd~---~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~--v~~w~~~~~-~--~~~ 527 (611)
T 1nr0_A 467 -----------GQDSKVHVYKL---SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK--VIPYSVANN-F--ELA 527 (611)
T ss_dssp -----------ETTSEEEEEEE---ETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC--EEEEEGGGT-T--EES
T ss_pred -----------CCCCeEEEEEc---cCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCC--EEEEEcCCC-C--cee
Confidence 34567888886 44433222 345667888999999999988765543 556654421 1 110
Q ss_pred E--EecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeE--EEeccCc
Q 002194 497 I--LFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE--RIWESDK 572 (954)
Q Consensus 497 ~--l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~--~l~~~~~ 572 (954)
. +...+...+.. ++|||||++|+.... ...+++||++++... .+.....
T Consensus 528 ~~~~~~~H~~~V~~------v~fspdg~~lasgs~---------------------D~~v~lW~~~~~~~~~~~~~~~h~ 580 (611)
T 1nr0_A 528 HTNSWTFHTAKVAC------VSWSPDNVRLATGSL---------------------DNSVIVWNMNKPSDHPIIIKGAHA 580 (611)
T ss_dssp CCCCCCCCSSCEEE------EEECTTSSEEEEEET---------------------TSCEEEEETTCTTSCCEEETTSST
T ss_pred eeeeeeecccceeE------EEECCCCCEEEEEEC---------------------CCcEEEEECCCcccccchhhccCc
Confidence 0 11112233333 899999999988762 124999999876532 2211110
Q ss_pred ccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEEC
Q 002194 573 EKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSW 616 (954)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~ 616 (954)
. ..+.. .+|+||+. ++ +... -..+.+|++
T Consensus 581 ~---~~v~~-------v~fs~d~~-l~-s~~~---D~~i~lW~~ 609 (611)
T 1nr0_A 581 M---SSVNS-------VIWLNETT-IV-SAGQ---DSNIKFWNV 609 (611)
T ss_dssp T---SCEEE-------EEEEETTE-EE-EEET---TSCEEEEEC
T ss_pred c---cCeeE-------EEEcCCCE-EE-EecC---CCCEEEEec
Confidence 0 01222 46899986 43 3332 234777765
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-15 Score=182.64 Aligned_cols=329 Identities=11% Similarity=0.067 Sum_probs=198.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
....++|||||++||+.... .+.+|++.. + ...+.++++. .
T Consensus 20 ~~~~~~~spdg~~l~~~~~~----------------------------------~v~l~~~~~-~--~~~~~~~~h~--~ 60 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGT----------------------------------SVYTVPVGS-L--TDTEIYTEHS--H 60 (611)
T ss_dssp CCCCCEECTTSSEEEEEETT----------------------------------EEEEEETTC-S--SCCEEECCCS--S
T ss_pred ceeEEeeCCCCCEEEeCCCC----------------------------------EEEEecCCC-c--ccCeEecCCC--C
Confidence 45678999999999998753 789999853 2 2334454433 4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCcee---ecccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR---PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~---~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
.+...+|||||++||.... ...|.++|+.+++.. .+..... .+..++|+|||+.|+.+.....
T Consensus 61 ~v~~~~~spdg~~lasg~~---------d~~v~lWd~~~~~~~~~~~~~~~~~-----~v~~v~fs~dg~~l~~~~~~~~ 126 (611)
T 1nr0_A 61 QTTVAKTSPSGYYCASGDV---------HGNVRIWDTTQTTHILKTTIPVFSG-----PVKDISWDSESKRIAAVGEGRE 126 (611)
T ss_dssp CEEEEEECTTSSEEEEEET---------TSEEEEEESSSTTCCEEEEEECSSS-----CEEEEEECTTSCEEEEEECCSS
T ss_pred ceEEEEECCCCcEEEEEeC---------CCCEEEeECCCCcceeeEeecccCC-----ceEEEEECCCCCEEEEEECCCC
Confidence 6889999999999998652 456777787654322 1211222 2778999999999987621000
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-ccccccccCCCCcE
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKY 345 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-~~~~~~~~SpDGk~ 345 (954)
....|+.++.......+... ..+..++|+|||+.
T Consensus 127 ---------------------------------------------~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~ 161 (611)
T 1nr0_A 127 ---------------------------------------------RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF 161 (611)
T ss_dssp ---------------------------------------------CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSC
T ss_pred ---------------------------------------------ceeEEEEeeCCCCcceecCCCCCceEEEECCCCCe
Confidence 11235555532223334444 67889999999985
Q ss_pred -EEEEeecCCcccccccCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 346 -ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 346 -l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
|+..+.+ +.+.+||....+.. .+.. +...+..++|+|||+.++..
T Consensus 162 ~l~s~s~D-------------~~v~lwd~~~~~~~~~l~~-------------H~~~V~~v~fspdg~~las~------- 208 (611)
T 1nr0_A 162 RIISGSDD-------------NTVAIFEGPPFKFKSTFGE-------------HTKFVHSVRYNPDGSLFAST------- 208 (611)
T ss_dssp EEEEEETT-------------SCEEEEETTTBEEEEEECC-------------CSSCEEEEEECTTSSEEEEE-------
T ss_pred EEEEEeCC-------------CeEEEEECCCCeEeeeecc-------------ccCceEEEEECCCCCEEEEE-------
Confidence 5555532 38999998765432 2322 22456789999999966554
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEe-------ecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcE
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILH-------KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (954)
+..+.|.+|++ .++.....+. .+...+..++|+|||+.|+..+.++. |.++|+.++ +..
T Consensus 209 ------s~D~~i~lwd~--~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~----v~lWd~~~~--~~~ 274 (611)
T 1nr0_A 209 ------GGDGTIVLYNG--VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT----IKIWNVATL--KVE 274 (611)
T ss_dssp ------ETTSCEEEEET--TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE----EEEEETTTT--EEE
T ss_pred ------ECCCcEEEEEC--CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe----EEEEeCCCC--cee
Confidence 34567889985 2333333332 35567788999999999988765543 444455554 212
Q ss_pred EEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCccccc
Q 002194 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYY 576 (954)
Q Consensus 497 ~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 576 (954)
........ ... .......+++.++.... ...+.+||..+++..+.......
T Consensus 275 ~~~~~~~~-~~~----~~~~~~~~~~~l~s~s~---------------------d~~i~~~~~~~~~~~~~~~gh~~--- 325 (611)
T 1nr0_A 275 KTIPVGTR-IED----QQLGIIWTKQALVSISA---------------------NGFINFVNPELGSIDQVRYGHNK--- 325 (611)
T ss_dssp EEEECCSS-GGG----CEEEEEECSSCEEEEET---------------------TCCEEEEETTTTEEEEEECCCSS---
T ss_pred eeecCCCC-ccc----eeEEEEEcCCEEEEEeC---------------------CCcEEEEeCCCCCcceEEcCCCC---
Confidence 21111100 000 00122235665555441 12488999988765444322211
Q ss_pred ceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEe
Q 002194 577 ETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQI 624 (954)
Q Consensus 577 ~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~L 624 (954)
.+.. .+|+|||+.++..... ..+.+|++.+++...+
T Consensus 326 -~v~~-------l~~spdg~~l~s~s~D----~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 326 -AITA-------LSSSADGKTLFSADAE----GHINSWDISTGISNRV 361 (611)
T ss_dssp -CEEE-------EEECTTSSEEEEEETT----SCEEEEETTTCCEEEC
T ss_pred -CEEE-------EEEeCCCCEEEEEeCC----CcEEEEECCCCceeee
Confidence 1222 4689999987644433 4699999988865443
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-16 Score=163.32 Aligned_cols=185 Identities=14% Similarity=0.154 Sum_probs=137.9
Q ss_pred CCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH--CCcEEEEcCCC----------------CCCCCCCc
Q 002194 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA--RGFAILGGPTT----------------PIIGEGDE 729 (954)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~G~~V~~~~~~----------------~~~G~G~~ 729 (954)
.+.|+||++||+.... ..| ......|++ +||.|+.++.. +..|+|.+
T Consensus 22 ~~~~~vv~lHG~~~~~-----------~~~----~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~ 86 (226)
T 3cn9_A 22 NADACIIWLHGLGADR-----------TDF----KPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPA 86 (226)
T ss_dssp TCCEEEEEECCTTCCG-----------GGG----HHHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSST
T ss_pred CCCCEEEEEecCCCCh-----------HHH----HHHHHHHhhcCCCcEEEeecCCCCccccCCCCcccccccccccccc
Confidence 3589999999964211 011 245667777 99999996543 34456543
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHH-hCCCcccEEEEeccCCCCCCCCCCCcccc
Q 002194 730 EAN-DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA-HAPHLFCCGIARSGAYNRTLTPFGFQNED 807 (954)
Q Consensus 730 ~~~-~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~~~~~~~~~~~~~~~~~ 807 (954)
... ........+|+..+++.+.+ ..+++++++++|||+||.+++.++. ++|++++++|+++|..+....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~-------- 157 (226)
T 3cn9_A 87 RAIDEDQLNASADQVIALIDEQRA-KGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDD-------- 157 (226)
T ss_dssp TCBCHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGG--------
T ss_pred ccccchhHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchh--------
Confidence 222 23345567777777777766 3477889999999999999999999 999999999999986432100
Q ss_pred chhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHH
Q 002194 808 RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVL 887 (954)
Q Consensus 808 ~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~ 887 (954)
+ .. ...++++|+|+++|++|..+| ++.++++++.++..|.++++++++ ++|.+. .+..
T Consensus 158 ---~-------~~----~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~~-----~~~~ 215 (226)
T 3cn9_A 158 ---L-------AL----DERHKRIPVLHLHGSQDDVVD--PALGRAAHDALQAQGVEVGWHDYP-MGHEVS-----LEEI 215 (226)
T ss_dssp ---C-------CC----CTGGGGCCEEEEEETTCSSSC--HHHHHHHHHHHHHTTCCEEEEEES-CCSSCC-----HHHH
T ss_pred ---h-------hh----cccccCCCEEEEecCCCCccC--HHHHHHHHHHHHHcCCceeEEEec-CCCCcc-----hhhH
Confidence 0 01 114567899999999999998 999999999999998899999999 999874 3446
Q ss_pred HHHHHHHHHhc
Q 002194 888 WETDRWLQKYC 898 (954)
Q Consensus 888 ~~i~~fl~~~l 898 (954)
+.+.+||+++|
T Consensus 216 ~~i~~~l~~~l 226 (226)
T 3cn9_A 216 HDIGAWLRKRL 226 (226)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhhC
Confidence 78999998874
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=179.01 Aligned_cols=228 Identities=16% Similarity=0.147 Sum_probs=148.3
Q ss_pred eEEEEEE---cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEE
Q 002194 639 KELIKYQ---RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (954)
Q Consensus 639 ~~~~~~~---~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (954)
...++|. ..+|..+.+++|.|++.. .+.|+||++||+..... .+.......++++||.|
T Consensus 24 ~~~~~~~~~~~~~~~~l~~~~~~P~~~~----~~~p~vv~lHG~~~~~~--------------~~~~~~~~~l~~~g~~v 85 (304)
T 3d0k_A 24 RNAIPYLDDDRNADRPFTLNTYRPYGYT----PDRPVVVVQHGVLRNGA--------------DYRDFWIPAADRHKLLI 85 (304)
T ss_dssp EEEEEECC---CTTCCEEEEEEECTTCC----TTSCEEEEECCTTCCHH--------------HHHHHTHHHHHHHTCEE
T ss_pred CceEEecccCCCCCceEEEEEEeCCCCC----CCCcEEEEeCCCCCCHH--------------HHHHHHHHHHHHCCcEE
Confidence 3456666 678899999999998642 24799999999742211 01012355677899999
Q ss_pred EEcCCCCC---------CCC--CCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC-c
Q 002194 716 LGGPTTPI---------IGE--GDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-L 783 (954)
Q Consensus 716 ~~~~~~~~---------~G~--G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~ 783 (954)
+.++++.. .|+ |.+..........+.|+.++++++.++..+|+++|+|+|||+||.+++.++.++|+ +
T Consensus 86 ~~~d~~~~~~p~~~~~~~g~~~g~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~ 165 (304)
T 3d0k_A 86 VAPTFSDEIWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAP 165 (304)
T ss_dssp EEEECCTTTSCHHHHTTTTTCBCTTSCBCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTT
T ss_pred EEeCCccccCCCccccccCccccccCCCCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCc
Confidence 99777632 033 33322211222345678899999998877899999999999999999999999985 7
Q ss_pred ccEEEEec-cCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCC--Cc-------------
Q 002194 784 FCCGIARS-GAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG--TL------------- 847 (954)
Q Consensus 784 ~~a~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~--~~------------- 847 (954)
++++|+.+ |.++.......+...... ...+|......+++|+|++||++|.++. .+
T Consensus 166 ~~~~vl~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~p~li~~G~~D~~~~~p~~~~~~~~~~~~~~~ 237 (304)
T 3d0k_A 166 FHAVTAANPGWYTLPTFEHRFPEGLDG--------VGLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHR 237 (304)
T ss_dssp CSEEEEESCSSCCCSSTTSBTTTSSBT--------TTCCHHHHHHHHHSCCEEEEETTCCCC--CCSCCSHHHHTTCSSH
T ss_pred eEEEEEecCcccccCCccccCccccCC--------CCCCHHHHHhhhcCCEEEEEeCCCCCccccccccChhhhccCccH
Confidence 88888655 554432111000000000 0112322233446899999999998741 00
Q ss_pred hHHHHHHHHHHH----hCCCc--EEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 848 TMQSDRFFNALK----GHGAL--CRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 848 ~~~~~~~~~~l~----~~g~~--~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
...+.++++.++ ..|++ ++++++|+++|.+ ......+.+||....
T Consensus 238 ~~~~~~~~~~l~~~a~~~g~~~~~~~~~~pg~gH~~------~~~~~~~~~~~~~~~ 288 (304)
T 3d0k_A 238 YARARHYYEAGQRAAAQRGLPFGWQLQVVPGIGHDG------QAMSQVCASLWFDGR 288 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEEEETTCCSCH------HHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEEeCCCCCch------HHHHHHHHHHHhhhh
Confidence 245667777776 56766 9999999999987 244567778876543
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=164.41 Aligned_cols=181 Identities=15% Similarity=0.112 Sum_probs=135.6
Q ss_pred CccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCccc---------chhhHHHH
Q 002194 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA---------NDRFVEQL 739 (954)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~---------~~~~~~~~ 739 (954)
+.|+||++||+... ...| ......|+. ||.|+.+++ +..|+|.+.. ........
T Consensus 37 ~~~~vv~~HG~~~~-----------~~~~----~~~~~~l~~-g~~v~~~~~-d~~g~g~s~~~~~~~~~~~~~~~~~~~ 99 (226)
T 2h1i_A 37 SKPVLLLLHGTGGN-----------ELDL----LPLAEIVDS-EASVLSVRG-NVLENGMPRFFRRLAEGIFDEEDLIFR 99 (226)
T ss_dssp TSCEEEEECCTTCC-----------TTTT----HHHHHHHHT-TSCEEEECC-SEEETTEEESSCEEETTEECHHHHHHH
T ss_pred CCcEEEEEecCCCC-----------hhHH----HHHHHHhcc-CceEEEecC-cccCCcchhhccccCccCcChhhHHHH
Confidence 47999999996411 1112 234555555 999999532 4556665421 11223344
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHh
Q 002194 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819 (954)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (954)
+.++.+.++++.++..+++++++++|||+||.+++.++.++|++++++|+++|......
T Consensus 100 ~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~--------------------- 158 (226)
T 2h1i_A 100 TKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG--------------------- 158 (226)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS---------------------
T ss_pred HHHHHHHHHHHHhhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc---------------------
Confidence 66677777777777777889999999999999999999999999999999998754211
Q ss_pred cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 820 ~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
......+++|+|+++|+.|..++ ...++++++.++..+.++++ ++++++|.+. .+..+.+.+||.++|
T Consensus 159 ---~~~~~~~~~p~l~~~G~~D~~~~--~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~l 226 (226)
T 2h1i_A 159 ---MQLANLAGKSVFIAAGTNDPICS--SAESEELKVLLENANANVTM-HWENRGHQLT-----MGEVEKAKEWYDKAF 226 (226)
T ss_dssp ---CCCCCCTTCEEEEEEESSCSSSC--HHHHHHHHHHHHTTTCEEEE-EEESSTTSCC-----HHHHHHHHHHHHHHC
T ss_pred ---cccccccCCcEEEEeCCCCCcCC--HHHHHHHHHHHHhcCCeEEE-EeCCCCCCCC-----HHHHHHHHHHHHHhC
Confidence 11123347899999999999998 89999999999998888998 9999999984 455788999998864
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=165.93 Aligned_cols=189 Identities=14% Similarity=0.126 Sum_probs=132.6
Q ss_pred CccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHC-----CcEEEEcCC----------------CCCCCCC
Q 002194 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-----GFAILGGPT----------------TPIIGEG 727 (954)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-----G~~V~~~~~----------------~~~~G~G 727 (954)
+.|+||++||...... .| ..+...|+.+ ||.|+.++. ++..|.+
T Consensus 22 ~~p~vv~lHG~g~~~~-----------~~----~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 86 (239)
T 3u0v_A 22 HSASLIFLHGSGDSGQ-----------GL----RMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKIT 86 (239)
T ss_dssp CCEEEEEECCTTCCHH-----------HH----HHHHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSS
T ss_pred CCcEEEEEecCCCchh-----------hH----HHHHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCC
Confidence 4799999999531100 01 1244555554 688888554 1222222
Q ss_pred Cccc-chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccc
Q 002194 728 DEEA-NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE 806 (954)
Q Consensus 728 ~~~~-~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~ 806 (954)
.... .........+++...++.+.+ ..+|.++++|+|||+||++|+.++.++|++++++|+++|..+...
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~-------- 157 (239)
T 3u0v_A 87 NDCPEHLESIDVMCQVLTDLIDEEVK-SGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKAS-------- 157 (239)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTC--------
T ss_pred cccccchhhHHHHHHHHHHHHHHHHH-hCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchh--------
Confidence 2211 112334455666666666554 347889999999999999999999999999999999998754211
Q ss_pred cchhhhcHHHHHhcCcccccCCCCCC-EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHH
Q 002194 807 DRTLWEATSTYVEMSPFMSANKLKKP-ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH 885 (954)
Q Consensus 807 ~~~~~~~~~~~~~~sp~~~~~~~~~P-~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~ 885 (954)
.... .+. .....+| +|++||++|..+| +++++++++.|+..+.+++++++++++|.+. .+
T Consensus 158 --~~~~---~~~-------~~~~~~pp~li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~-----~~ 218 (239)
T 3u0v_A 158 --AVYQ---ALQ-------KSNGVLPELFQCHGTADELVL--HSWAEETNSMLKSLGVTTKFHSFPNVYHELS-----KT 218 (239)
T ss_dssp --HHHH---HHH-------HCCSCCCCEEEEEETTCSSSC--HHHHHHHHHHHHHTTCCEEEEEETTCCSSCC-----HH
T ss_pred --HHHH---HHH-------hhccCCCCEEEEeeCCCCccC--HHHHHHHHHHHHHcCCcEEEEEeCCCCCcCC-----HH
Confidence 0000 000 1234566 9999999999999 9999999999999999999999999999985 45
Q ss_pred HHHHHHHHHHHhccc
Q 002194 886 VLWETDRWLQKYCVS 900 (954)
Q Consensus 886 ~~~~i~~fl~~~l~~ 900 (954)
..+.+.+||.+++..
T Consensus 219 ~~~~~~~~l~~~l~~ 233 (239)
T 3u0v_A 219 ELDILKLWILTKLPG 233 (239)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhCCC
Confidence 678899999999854
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-17 Score=177.53 Aligned_cols=216 Identities=8% Similarity=0.018 Sum_probs=146.4
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH-HCCcEEEEcCCCCCCCCCCcc
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEE 730 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~G~G~~~ 730 (954)
+.++++.|.+ ++.|+||++|||++..+.. .. ...+...|+ +.||.|+.+++++.. .
T Consensus 84 ~~~~~~~p~~------~~~p~vv~lHGgg~~~~~~--------~~----~~~~~~~la~~~g~~vi~~D~r~~~---~-- 140 (326)
T 3d7r_A 84 MQVFRFNFRH------QIDKKILYIHGGFNALQPS--------PF----HWRLLDKITLSTLYEVVLPIYPKTP---E-- 140 (326)
T ss_dssp EEEEEEESTT------CCSSEEEEECCSTTTSCCC--------HH----HHHHHHHHHHHHCSEEEEECCCCTT---T--
T ss_pred EEEEEEeeCC------CCCeEEEEECCCcccCCCC--------HH----HHHHHHHHHHHhCCEEEEEeCCCCC---C--
Confidence 5667788864 2369999999985322110 00 112345566 469999997765432 1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc----ccEEEEeccCCCCCCCCCCCc-c
Q 002194 731 ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL----FCCGIARSGAYNRTLTPFGFQ-N 805 (954)
Q Consensus 731 ~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~~~~~~~~~~~~~~-~ 805 (954)
......++|+.++++++.++ +++++++|+||||||.+|+.++.+.|++ ++++|+++|.++......... .
T Consensus 141 ---~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~~~~~~~ 215 (326)
T 3d7r_A 141 ---FHIDDTFQAIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSNKDISDA 215 (326)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTTCCHH
T ss_pred ---CCchHHHHHHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCChhHHhh
Confidence 12356789999999999887 6788999999999999999999887666 999999999876543211111 0
Q ss_pred c-cchhh-------hcHHHHH--------hcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEE
Q 002194 806 E-DRTLW-------EATSTYV--------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869 (954)
Q Consensus 806 ~-~~~~~-------~~~~~~~--------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~ 869 (954)
. ....+ .....|. ..+|+...-+.-+|+||+||++|.. ..++.++.++++..+.++++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~----~~~~~~~~~~l~~~~~~~~~~~ 291 (326)
T 3d7r_A 216 LIEQDAVLSQFGVNEIMKKWANGLPLTDKRISPINGTIEGLPPVYMFGGGREMT----HPDMKLFEQMMLQHHQYIEFYD 291 (326)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHTTSCTTSTTTSGGGSCCTTCCCEEEEEETTSTT----HHHHHHHHHHHHHTTCCEEEEE
T ss_pred hcccCcccCHHHHHHHHHHhcCCCCCCCCeECcccCCcccCCCEEEEEeCcccc----hHHHHHHHHHHHHCCCcEEEEE
Confidence 0 00000 0001111 1123221111225999999999963 5678889999999999999999
Q ss_pred eCCCCCcCCC--cccHHHHHHHHHHHHHHhcc
Q 002194 870 LPFESHGYAA--RESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 870 ~~~~~H~~~~--~~~~~~~~~~i~~fl~~~l~ 899 (954)
+|+++|.+.. .+....+.+.+.+||++++.
T Consensus 292 ~~g~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 323 (326)
T 3d7r_A 292 YPKMVHDFPIYPIRQSHKAIKQIAKSIDEDVT 323 (326)
T ss_dssp ETTCCTTGGGSSSHHHHHHHHHHHHHHTSCCC
T ss_pred eCCCcccccccCCHHHHHHHHHHHHHHHHHhh
Confidence 9999998753 25567888999999987763
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-18 Score=180.01 Aligned_cols=200 Identities=13% Similarity=0.117 Sum_probs=135.9
Q ss_pred CCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHH----HHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHH
Q 002194 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW----LARGFAILGGPTTPIIGEGDEEANDRFVEQLVACA 743 (954)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----a~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~ 743 (954)
++.|+||++|||++..+.. +... ....+..| +++||.|+.+++++. +.. .....++|+
T Consensus 39 ~~~p~vv~lHGgg~~~g~~------~~~~----~~~~~~~L~~~a~~~g~~vi~~d~r~~---~~~-----~~~~~~~d~ 100 (273)
T 1vkh_A 39 NTREAVIYIHGGAWNDPEN------TPND----FNQLANTIKSMDTESTVCQYSIEYRLS---PEI-----TNPRNLYDA 100 (273)
T ss_dssp TCCEEEEEECCSTTTCTTC------CGGG----GHHHHHHHHHHCTTCCEEEEEECCCCT---TTS-----CTTHHHHHH
T ss_pred CCCeEEEEECCCcccCCcC------ChHH----HHHHHHHHhhhhccCCcEEEEeecccC---CCC-----CCCcHHHHH
Confidence 3589999999975432110 0001 12345556 479999999776432 221 123567899
Q ss_pred HHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-----------------CCcccEEEEeccCCCCCCCCCCCcc-
Q 002194 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-----------------PHLFCCGIARSGAYNRTLTPFGFQN- 805 (954)
Q Consensus 744 ~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-----------------p~~~~a~v~~~~~~~~~~~~~~~~~- 805 (954)
.++++++.++ ++.++++|+||||||.+|+.++.+. |++++++|+++|+++..........
T Consensus 101 ~~~~~~l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~ 178 (273)
T 1vkh_A 101 VSNITRLVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEY 178 (273)
T ss_dssp HHHHHHHHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGG
T ss_pred HHHHHHHHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhcccH
Confidence 9999999887 5678999999999999999999885 6889999999987652110000000
Q ss_pred ---------ccchhhh-cHHHHHhcCccc--ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002194 806 ---------EDRTLWE-ATSTYVEMSPFM--SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (954)
Q Consensus 806 ---------~~~~~~~-~~~~~~~~sp~~--~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (954)
.....|. .. ...++.. ...++++|+||+||++|..|| ++++++++++++..+.++++++++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~~~l~~~~~~~~~~~~~~~ 253 (273)
T 1vkh_A 179 DCFTRLAFPDGIQMYEEEP---SRVMPYVKKALSRFSIDMHLVHSYSDELLT--LRQTNCLISCLQDYQLSFKLYLDDLG 253 (273)
T ss_dssp HHHHHHHCTTCGGGCCCCH---HHHHHHHHHHHHHHTCEEEEEEETTCSSCC--THHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHHHHhcccccchhhcc---cccChhhhhcccccCCCEEEEecCCcCCCC--hHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 0000011 00 0111110 112267899999999999998 99999999999999999999999999
Q ss_pred CCcCCCcccHHHHHHHHHHHH
Q 002194 874 SHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 874 ~H~~~~~~~~~~~~~~i~~fl 894 (954)
+|.+. .+. .++.+.|.+||
T Consensus 254 gH~~~-~~~-~~~~~~i~~fl 272 (273)
T 1vkh_A 254 LHNDV-YKN-GKVAKYIFDNI 272 (273)
T ss_dssp SGGGG-GGC-HHHHHHHHHTC
T ss_pred ccccc-ccC-hHHHHHHHHHc
Confidence 99974 333 67777777775
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-16 Score=159.36 Aligned_cols=197 Identities=15% Similarity=0.119 Sum_probs=139.0
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccH--HHHHHHHCCcEEE
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST--SVLLWLARGFAIL 716 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~G~~V~ 716 (954)
.+...+. .+|.++++++|.|.+ +.|+||++||+.... ..| .. ....|+++||.|+
T Consensus 4 ~~~~~~~-~~g~~l~~~~~~~~~-------~~~~vv~~hG~~~~~-----------~~~----~~~~~~~~l~~~G~~v~ 60 (207)
T 3bdi_A 4 LQEEFID-VNGTRVFQRKMVTDS-------NRRSIALFHGYSFTS-----------MDW----DKADLFNNYSKIGYNVY 60 (207)
T ss_dssp CEEEEEE-ETTEEEEEEEECCTT-------CCEEEEEECCTTCCG-----------GGG----GGGTHHHHHHTTTEEEE
T ss_pred ceeEEEe-eCCcEEEEEEEeccC-------CCCeEEEECCCCCCc-----------ccc----chHHHHHHHHhCCCeEE
Confidence 3444444 489999999999864 268999999974211 111 23 5678889999999
Q ss_pred EcCCCCCCCCCCc---ccchhhHHH-HHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEecc
Q 002194 717 GGPTTPIIGEGDE---EANDRFVEQ-LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (954)
Q Consensus 717 ~~~~~~~~G~G~~---~~~~~~~~~-~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (954)
.+ +..|+|.+ ..... .. ..+++.+.+..+.+. .+.++++++|||+||.+++.++.++|++++++|+++|
T Consensus 61 ~~---d~~g~g~s~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~ 133 (207)
T 3bdi_A 61 AP---DYPGFGRSASSEKYGI--DRGDLKHAAEFIRDYLKA--NGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAP 133 (207)
T ss_dssp EE---CCTTSTTSCCCTTTCC--TTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred EE---cCCcccccCcccCCCC--CcchHHHHHHHHHHHHHH--cCCCceEEEEECccHHHHHHHHHhCchhheEEEEeCC
Confidence 94 44566666 33211 11 233444444444443 2446999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC
Q 002194 793 AYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (954)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 872 (954)
.... . + ...+.++++|+|+++|++|..++ ....+++++.+. +++++++++
T Consensus 134 ~~~~---~--~-------------------~~~~~~~~~p~l~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~ 183 (207)
T 3bdi_A 134 AWVE---S--L-------------------KGDMKKIRQKTLLVWGSKDHVVP--IALSKEYASIIS----GSRLEIVEG 183 (207)
T ss_dssp CSCG---G--G-------------------HHHHTTCCSCEEEEEETTCTTTT--HHHHHHHHHHST----TCEEEEETT
T ss_pred cccc---c--h-------------------hHHHhhccCCEEEEEECCCCccc--hHHHHHHHHhcC----CceEEEeCC
Confidence 5210 0 0 12345678999999999999998 888888887763 458999999
Q ss_pred CCCcCCCcccHHHHHHHHHHHHHH
Q 002194 873 ESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 873 ~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
++|.+. .+....+.+.+.+||++
T Consensus 184 ~~H~~~-~~~~~~~~~~i~~fl~~ 206 (207)
T 3bdi_A 184 SGHPVY-IEKPEEFVRITVDFLRN 206 (207)
T ss_dssp CCSCHH-HHSHHHHHHHHHHHHHT
T ss_pred CCCCcc-ccCHHHHHHHHHHHHhh
Confidence 999863 34456677778888764
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-17 Score=191.70 Aligned_cols=237 Identities=19% Similarity=0.167 Sum_probs=162.5
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHH-HHHHHCCcEEEE
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV-LLWLARGFAILG 717 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la~~G~~V~~ 717 (954)
.+.++++..||.+|.+.+|.|++ .+++|+||+.||....... . ..|. ..+ ..|+++||+|+.
T Consensus 9 ~~~v~i~~~DG~~L~~~~~~P~~-----~~~~P~vv~~~~~g~~~~~-----~---~~y~----~~~~~~la~~Gy~vv~ 71 (587)
T 3i2k_A 9 ASNVMVPMRDGVRLAVDLYRPDA-----DGPVPVLLVRNPYDKFDVF-----A---WSTQ----STNWLEFVRDGYAVVI 71 (587)
T ss_dssp EEEEEEECTTSCEEEEEEEEECC-----SSCEEEEEEEESSCTTCHH-----H---HHTT----TCCTHHHHHTTCEEEE
T ss_pred EEEEEEECCCCCEEEEEEEECCC-----CCCeeEEEEECCcCCCccc-----c---ccch----hhHHHHHHHCCCEEEE
Confidence 46789999999999999999975 2358999999874211000 0 0010 023 688999999999
Q ss_pred cCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC-CCC
Q 002194 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA-YNR 796 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~-~~~ 796 (954)
.+ .+|+|.+.+....+....+|+.++++||.+++..+ .+|+++|+||||++++.++++.|+.++|+|+.++. .+.
T Consensus 72 ~D---~RG~G~S~g~~~~~~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~ 147 (587)
T 3i2k_A 72 QD---TRGLFASEGEFVPHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLY 147 (587)
T ss_dssp EE---CTTSTTCCSCCCTTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTC
T ss_pred Ec---CCCCCCCCCccccccchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCccccc
Confidence 44 45666654432223567899999999999887665 79999999999999999999988999999999988 664
Q ss_pred CCCC---CCCccc-cchhhh------------------------------------------------------------
Q 002194 797 TLTP---FGFQNE-DRTLWE------------------------------------------------------------ 812 (954)
Q Consensus 797 ~~~~---~~~~~~-~~~~~~------------------------------------------------------------ 812 (954)
.... -+.... ....|.
T Consensus 148 ~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (587)
T 3i2k_A 148 RAPWYGPGGALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVD 227 (587)
T ss_dssp CCCCSCTTCCCCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHTCHHHHHTCSSTTCCHHHHHHCTHHHHTTTT
T ss_pred ccceeecCCccccchHHHHHHHhhhhcccccccCCccchhhhhhhhhhhhHHHHHHhcCCcccchhccccchhHHhhhhc
Confidence 3210 000000 000010
Q ss_pred ---cHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC---------Cc
Q 002194 813 ---ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA---------AR 880 (954)
Q Consensus 813 ---~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~---------~~ 880 (954)
..+.|...++...+++|++|+|+++|..|.. ...+.++|++|+..++ .++++-|. .|... ..
T Consensus 228 ~~~~d~yw~~~s~~~~l~~I~vPvL~v~Gw~D~~----~~~~~~~~~~l~~~~~-~~L~iGPw-~H~~~~~~~g~~~~g~ 301 (587)
T 3i2k_A 228 HPDNDESWQSISLFERLGGLATPALITAGWYDGF----VGESLRTFVAVKDNAD-ARLVVGPW-SHSNLTGRNADRKFGI 301 (587)
T ss_dssp CCSCCHHHHTTCCHHHHTTCCCCEEEEEEEECTT----HHHHHHHHHHHTTTSC-EEEEEEEE-ETTBCSSEETTEECCG
T ss_pred CCCCChHHhcCChhhhhccCCCCEEEEccCCCcc----chHHHHHHHHHhhcCC-CEEEECCc-cccCccccCCCcccCC
Confidence 0112333455567889999999999999976 3457889999987765 47777665 46521 11
Q ss_pred cc---HHHHHHHHHHHHHHhcccCC
Q 002194 881 ES---IMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 881 ~~---~~~~~~~i~~fl~~~l~~~~ 902 (954)
.. ..+..+.+++||++||+...
T Consensus 302 ~~~~~~~~~~~~~~~wFD~~Lkg~~ 326 (587)
T 3i2k_A 302 AATYPIQEATTMHKAFFDRHLRGET 326 (587)
T ss_dssp GGSCCHHHHHHHHHHHHHHHHSCCT
T ss_pred ccccccchhhHHHHHHHHHHhcCCC
Confidence 11 12334889999999998654
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-16 Score=161.78 Aligned_cols=196 Identities=14% Similarity=0.100 Sum_probs=138.2
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002194 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (954)
Q Consensus 648 ~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G 727 (954)
++..+...++.|.. .+.|+||++||+... ...| ......|+ .||.|+.++.....+.|
T Consensus 14 ~~~~l~~~~~~~~~------~~~p~vv~lHG~g~~-----------~~~~----~~~~~~l~-~~~~vv~~d~~~~~~~g 71 (223)
T 3b5e_A 14 TDLAFPYRLLGAGK------ESRECLFLLHGSGVD-----------ETTL----VPLARRIA-PTATLVAARGRIPQEDG 71 (223)
T ss_dssp CSSSSCEEEESTTS------SCCCEEEEECCTTBC-----------TTTT----HHHHHHHC-TTSEEEEECCSEEETTE
T ss_pred cCCCceEEEeCCCC------CCCCEEEEEecCCCC-----------HHHH----HHHHHhcC-CCceEEEeCCCCCcCCc
Confidence 34456655554432 124899999996311 1111 12344444 49999996643211111
Q ss_pred Ccc--------cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC
Q 002194 728 DEE--------ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (954)
Q Consensus 728 ~~~--------~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~ 799 (954)
.++ ..........+|+.+.++++.++..+|+++++++|||+||.+|+.++.++|++++++|+++|.......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~ 151 (223)
T 3b5e_A 72 FRWFERIDPTRFEQKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDHV 151 (223)
T ss_dssp EESSCEEETTEECHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSSC
T ss_pred cccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCcccc
Confidence 111 112234556788888888888775678899999999999999999999999999999999986542100
Q ss_pred CCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCC
Q 002194 800 PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA 879 (954)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 879 (954)
.....+++|+|++||++|..|| .+.++ +++.++..|.++++++|+ ++|.+.
T Consensus 152 ------------------------~~~~~~~~P~li~~G~~D~~v~--~~~~~-~~~~l~~~g~~~~~~~~~-~gH~~~- 202 (223)
T 3b5e_A 152 ------------------------PATDLAGIRTLIIAGAADETYG--PFVPA-LVTLLSRHGAEVDARIIP-SGHDIG- 202 (223)
T ss_dssp ------------------------CCCCCTTCEEEEEEETTCTTTG--GGHHH-HHHHHHHTTCEEEEEEES-CCSCCC-
T ss_pred ------------------------ccccccCCCEEEEeCCCCCcCC--HHHHH-HHHHHHHCCCceEEEEec-CCCCcC-
Confidence 1223457899999999999998 89999 999999999999999999 899984
Q ss_pred cccHHHHHHHHHHHHHHhc
Q 002194 880 RESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 880 ~~~~~~~~~~i~~fl~~~l 898 (954)
.+..+.+.+||.+.+
T Consensus 203 ----~~~~~~i~~~l~~~~ 217 (223)
T 3b5e_A 203 ----DPDAAIVRQWLAGPI 217 (223)
T ss_dssp ----HHHHHHHHHHHHCC-
T ss_pred ----HHHHHHHHHHHHhhh
Confidence 233567889987654
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-16 Score=165.94 Aligned_cols=202 Identities=15% Similarity=0.146 Sum_probs=142.9
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAAV 747 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av 747 (954)
.|+||++||..... ..| ...+..|+++||.|+. .+..|+|.+... ........+|+.+++
T Consensus 40 ~~~vv~~HG~~~~~-----------~~~----~~~~~~l~~~G~~v~~---~d~~G~G~s~~~~~~~~~~~~~~d~~~~i 101 (270)
T 3rm3_A 40 PVGVLLVHGFTGTP-----------HSM----RPLAEAYAKAGYTVCL---PRLKGHGTHYEDMERTTFHDWVASVEEGY 101 (270)
T ss_dssp SEEEEEECCTTCCG-----------GGT----HHHHHHHHHTTCEEEE---CCCTTCSSCHHHHHTCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCh-----------hHH----HHHHHHHHHCCCEEEE---eCCCCCCCCccccccCCHHHHHHHHHHHH
Confidence 58999999963211 011 2457778889999999 666788877542 233566789999999
Q ss_pred HHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC-----------CC------CCccc--c-
Q 002194 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-----------PF------GFQNE--D- 807 (954)
Q Consensus 748 ~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-----------~~------~~~~~--~- 807 (954)
+++.++ .++++++|||+||.+++.++.++|+ ++++|+++|..+.... .+ .+... .
T Consensus 102 ~~l~~~----~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (270)
T 3rm3_A 102 GWLKQR----CQTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKE 176 (270)
T ss_dssp HHHHTT----CSEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEEECCCCCCSCTTCCC
T ss_pred HHHHhh----CCcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHHHHhCccccccchHh
Confidence 999876 5699999999999999999999999 9999999986542100 00 00000 0
Q ss_pred ----chhhhcHHHHHh--cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcc
Q 002194 808 ----RTLWEATSTYVE--MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (954)
Q Consensus 808 ----~~~~~~~~~~~~--~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (954)
.........+.. .+....+.++++|+|+++|++|..+| +..+.++++.+.. .+++++++|+++|.+....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~ 252 (270)
T 3rm3_A 177 LAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVP--PGNADIIFQGISS--TEKEIVRLRNSYHVATLDY 252 (270)
T ss_dssp CCCSEEEHHHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSC--TTHHHHHHHHSCC--SSEEEEEESSCCSCGGGST
T ss_pred hcccccChhHHHHHHHHHHHHHhhhhhcCCCEEEEECCCCcccC--HHHHHHHHHhcCC--CcceEEEeCCCCcccccCc
Confidence 000000000000 01223566789999999999999998 8889888887753 4679999999999986544
Q ss_pred cHHHHHHHHHHHHHHhc
Q 002194 882 SIMHVLWETDRWLQKYC 898 (954)
Q Consensus 882 ~~~~~~~~i~~fl~~~l 898 (954)
....+.+.+.+||+++.
T Consensus 253 ~~~~~~~~i~~fl~~~~ 269 (270)
T 3rm3_A 253 DQPMIIERSLEFFAKHA 269 (270)
T ss_dssp THHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhcC
Confidence 55788999999999864
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-15 Score=183.57 Aligned_cols=273 Identities=14% Similarity=0.103 Sum_probs=177.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..++|||||++|||+.+.. +++...||++|+++|+..+.+..... ...++|+ ||+.|+|+.......
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~----G~~~~~i~v~dl~tg~~~~~~~~~~k-----~~~~~Ws-Dg~~l~y~~~~~~~~- 198 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLA----GSDWREIHLMDVESKQPLETPLKDVK-----FSGISWL-GNEGFFYSSYDKPDG- 198 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECS----SCCEEEEEEEETTTCSEEEEEEEEEE-----SCCCEEE-TTTEEEEEESSCCC--
T ss_pred EEEEEEECCCCCEEEEEEecC----CCceEEEEEEECCCCCCCccccCCce-----eccEEEe-CCCEEEEEEecCccc-
Confidence 466789999999999988633 55568999999999987665321110 3578999 999999984332100
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC--ceeEcCCC-c----cccccccCC
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--TVKEIGPP-A----VYTSLDPSP 341 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G--~~~~l~~~-~----~~~~~~~Sp 341 (954)
+ . +... ....+||++++ ++ +.+.+... . ...++.|||
T Consensus 199 --------~-~------------------~~~~--------~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp 243 (693)
T 3iuj_A 199 --------S-E------------------LSAR--------TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE 243 (693)
T ss_dssp -----------------------------------------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT
T ss_pred --------c-c------------------cccc--------CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC
Confidence 0 0 0000 02356899988 54 33455443 3 356789999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCc--eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~--~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
||++|++.+..... ..+++++|++++ +.+.++.... .... .|++||+.++|..+.
T Consensus 244 Dg~~l~~~~~~~~~---------~~~i~~~d~~~~~~~~~~l~~~~~-------------~~~~-~~~~~g~~l~~~t~~ 300 (693)
T 3iuj_A 244 DDRFLLISAANSTS---------GNRLYVKDLSQENAPLLTVQGDLD-------------ADVS-LVDNKGSTLYLLTNR 300 (693)
T ss_dssp TSCEEEEEEESSSS---------CCEEEEEETTSTTCCCEEEECSSS-------------SCEE-EEEEETTEEEEEECT
T ss_pred CCCEEEEEEccCCC---------CcEEEEEECCCCCCceEEEeCCCC-------------ceEE-EEeccCCEEEEEECC
Confidence 99999998754321 248999999865 5566654321 1112 288999988887432
Q ss_pred ccCCCccccccCCCeEEEEecCCCCCCCc---eEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcE
Q 002194 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~---~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (954)
. .....|+++++ +++.. +.++.....+. .|+++|+.|++....++ ..+|++++++++ ...
T Consensus 301 ~---------~~~~~l~~~d~---~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g-~~~l~~~d~~g~--~~~ 363 (693)
T 3iuj_A 301 D---------APNRRLVTVDA---ANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDA-TARVEQFDYEGK--RVR 363 (693)
T ss_dssp T---------CTTCEEEEEET---TSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETT-EEEEEEECTTSC--EEE
T ss_pred C---------CCCCEEEEEeC---CCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECC-eeEEEEEECCCC--eeE
Confidence 1 12568999996 44444 56665544433 89999999999887665 378999999864 333
Q ss_pred EEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccC
Q 002194 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 497 ~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
.+.-.....+.. +.+++|++.++|.... .+ ..+.||.+|+++++.+.+....
T Consensus 364 ~l~~p~~~~~~~------~~~~~d~~~l~~~~ss--------------~~---tP~~l~~~d~~~g~~~~l~~~~ 415 (693)
T 3iuj_A 364 EVALPGLGSVSG------FNGKHDDPALYFGFEN--------------YA---QPPTLYRFEPKSGAISLYRASA 415 (693)
T ss_dssp EECCSSSSEEEE------CCCCTTCSCEEEEEEC--------------SS---SCCEEEEECTTTCCEEEEECCC
T ss_pred EeecCCCceEEe------eecCCCCCEEEEEecC--------------CC---CCCEEEEEECCCCeEEEEEeCC
Confidence 332211111111 4578899988887632 11 2346999999999988887655
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-16 Score=171.30 Aligned_cols=238 Identities=13% Similarity=0.076 Sum_probs=154.4
Q ss_pred ceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 638 QKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 638 ~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
+.+.+++.+. .|.++.++ +.|. + .++|+||++||++... ....|... ......+++.||+|+
T Consensus 8 ~v~~~~~~S~~~~~~i~v~-~~p~-~-----~~~p~vvllHG~~~~~---------~~~~w~~~-~~~~~~~~~~~~~vv 70 (304)
T 1sfr_A 8 PVEYLQVPSPSMGRDIKVQ-FQSG-G-----ANSPALYLLDGLRAQD---------DFSGWDIN-TPAFEWYDQSGLSVV 70 (304)
T ss_dssp CCEEEEEEETTTTEEEEEE-EECC-S-----TTBCEEEEECCTTCCS---------SSCHHHHH-CCHHHHHTTSSCEEE
T ss_pred eEEEEEEECccCCCceEEE-ECCC-C-----CCCCEEEEeCCCCCCC---------CcchhhcC-CCHHHHHhcCCeEEE
Confidence 4677788775 46777776 4443 2 2489999999963100 00011100 012345667899999
Q ss_pred EcCCCCCCCCCCccc---------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEE
Q 002194 717 GGPTTPIIGEGDEEA---------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~---------~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (954)
.++..+..++..... ...+.....+|+... +.++..+++++++|+|+||||++|+.++.++|++|+++
T Consensus 71 ~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~---i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~ 147 (304)
T 1sfr_A 71 MPVGGQSSFYSDWYQPACGKAGCQTYKWETFLTSELPGW---LQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYA 147 (304)
T ss_dssp EECCCTTCTTCBCSSCEEETTEEECCBHHHHHHTHHHHH---HHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEE
T ss_pred EECCCCCccccccCCccccccccccccHHHHHHHHHHHH---HHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEE
Confidence 977754433321100 112222223444444 44433477789999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCCC---------c-cccchhhh--cHHHHHhcCcccccCCC---CCCEEEEEeCCCC----------
Q 002194 788 IARSGAYNRTLTPFGF---------Q-NEDRTLWE--ATSTYVEMSPFMSANKL---KKPILLVHGEEDN---------- 842 (954)
Q Consensus 788 v~~~~~~~~~~~~~~~---------~-~~~~~~~~--~~~~~~~~sp~~~~~~~---~~P~Lii~G~~D~---------- 842 (954)
|+++|.++.....+.. . ......|. ....+...+|...+.++ ++|+||+||+.|.
T Consensus 148 v~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~l~~~~~pi~l~~G~~D~~~~~~~~~~~ 227 (304)
T 1sfr_A 148 GAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPA 227 (304)
T ss_dssp EEESCCSCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHH
T ss_pred EEECCccCccccchhhhhhHhhhhccccchHHhcCCcchhhhHhcCHHHHHHHhhhcCCeEEEEecCCCCcccccccccc
Confidence 9999987643211000 0 00000111 12345666777666555 5899999999998
Q ss_pred ----CCCCchHHHHHHHHHHHhCC-CcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhccc
Q 002194 843 ----NSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 843 ----~v~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (954)
.++ ..++++++++|+..| +++++.+|++++|.+. .....+..++.||.++|..
T Consensus 228 ~~~e~~~--~~~~~~~~~~L~~~G~~~v~~~~~~~g~H~~~---~w~~~l~~~l~~l~~~l~~ 285 (304)
T 1sfr_A 228 KFLEGFV--RTSNIKFQDAYNAGGGHNGVFDFPDSGTHSWE---YWGAQLNAMKPDLQRALGA 285 (304)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHTC
T ss_pred chhHHHH--HHHHHHHHHHHHhCCCCceEEEecCCCccCHH---HHHHHHHHHHHHHHHhcCC
Confidence 556 889999999999999 9999999977799753 2345567889999999864
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-15 Score=168.29 Aligned_cols=287 Identities=8% Similarity=0.045 Sum_probs=189.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++|+....+ +.|.+|++.. + .....+.. +..
T Consensus 34 ~v~~~~~s~~~~~l~~~~~d---------------------------------g~i~vwd~~~-~--~~~~~~~~--h~~ 75 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKD---------------------------------SSASVWYSLN-G--ERLGTLDG--HTG 75 (369)
T ss_dssp CEEEEEECTTSCEEEEEESS---------------------------------SCEEEEETTT-C--CEEEEECC--CSS
T ss_pred eEEEEEEcCCCCEEEEEeCC---------------------------------CEEEEEeCCC-c--hhhhhhhh--cCC
Confidence 46678999999999988765 4799999854 2 22333432 234
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..+.|+|||+.|+.... ...|.++|+++++.......... +..+.|+|||+.|++......
T Consensus 76 ~v~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~~~~--- 138 (369)
T 3zwl_B 76 TIWSIDVDCFTKYCVTGSA---------DYSIKLWDVSNGQCVATWKSPVP-----VKRVEFSPCGNYFLAILDNVM--- 138 (369)
T ss_dssp CEEEEEECTTSSEEEEEET---------TTEEEEEETTTCCEEEEEECSSC-----EEEEEECTTSSEEEEEECCBT---
T ss_pred cEEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCcEEEEeecCCC-----eEEEEEccCCCEEEEecCCcc---
Confidence 6889999999999988652 45788889988877665553332 678999999999987721100
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC------------ceeEcCCC---cc
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG------------TVKEIGPP---AV 333 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G------------~~~~l~~~---~~ 333 (954)
. ....|.++++ .+ ....+... ..
T Consensus 139 --------------------------------~---------~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 139 --------------------------------K---------NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp --------------------------------T---------BCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred --------------------------------C---------CCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 0 1123444454 22 11112111 26
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC-ceE-EEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
+..++|+|||+.|+....+ +.|.+||+.. ... ..+..+. ..+..+.|+|||+
T Consensus 178 ~~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~ 231 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHKD-------------GKISKYDVSNNYEYVDSIDLHE-------------KSISDMQFSPDLT 231 (369)
T ss_dssp EEEEEECGGGCEEEEEETT-------------SEEEEEETTTTTEEEEEEECCS-------------SCEEEEEECTTSS
T ss_pred eeEEEEcCCCCEEEEEcCC-------------CEEEEEECCCCcEeEEEEecCC-------------CceeEEEECCCCC
Confidence 7788999999999887733 3899999986 333 3333221 3456799999999
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEecccc----------ce
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR----------RT 481 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~----------~~ 481 (954)
.++.. +..+.|.+|++ ..++..........+..+.|+|+++.+++....+.. ..
T Consensus 232 ~l~~~-------------~~d~~i~v~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 295 (369)
T 3zwl_B 232 YFITS-------------SRDTNSFLVDV---STLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKF 295 (369)
T ss_dssp EEEEE-------------ETTSEEEEEET---TTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------C
T ss_pred EEEEe-------------cCCceEEEEEC---CCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcc
Confidence 77665 33568999996 545554444466667889999999999998755421 11
Q ss_pred EEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCC
Q 002194 482 RTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINT 561 (954)
Q Consensus 482 ~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 561 (954)
.+.+++..++ +.......+...+.. ++|+|||++|+.... ...|++|++++
T Consensus 296 ~i~~~d~~~~--~~~~~~~~~~~~v~~------~~~s~~~~~l~s~~~---------------------dg~v~iw~~~~ 346 (369)
T 3zwl_B 296 EARFYHKIFE--EEIGRVQGHFGPLNT------VAISPQGTSYASGGE---------------------DGFIRLHHFEK 346 (369)
T ss_dssp EEEEEETTTC--CEEEEEECCSSCEEE------EEECTTSSEEEEEET---------------------TSEEEEEEECH
T ss_pred eeEEEecCCC--cchhheecccCcEEE------EEECCCCCEEEEEcC---------------------CCeEEEEECcc
Confidence 5666777664 333333333333333 789999998887762 23488888875
Q ss_pred CC
Q 002194 562 GS 563 (954)
Q Consensus 562 g~ 563 (954)
+.
T Consensus 347 ~~ 348 (369)
T 3zwl_B 347 SY 348 (369)
T ss_dssp HH
T ss_pred cc
Confidence 43
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-16 Score=165.59 Aligned_cols=180 Identities=16% Similarity=0.103 Sum_probs=130.6
Q ss_pred CccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCccc---------chhhHHHH
Q 002194 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA---------NDRFVEQL 739 (954)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~---------~~~~~~~~ 739 (954)
+.|+||++||+..... .| ......|+ .+|.|+.+++ +..|+|.+.. ........
T Consensus 61 ~~p~vv~~HG~~~~~~-----------~~----~~~~~~l~-~~~~v~~~~~-d~~g~g~s~~~~~~~~~~~~~~~~~~~ 123 (251)
T 2r8b_A 61 GAPLFVLLHGTGGDEN-----------QF----FDFGARLL-PQATILSPVG-DVSEHGAARFFRRTGEGVYDMVDLERA 123 (251)
T ss_dssp TSCEEEEECCTTCCHH-----------HH----HHHHHHHS-TTSEEEEECC-SEEETTEEESSCBCGGGCBCHHHHHHH
T ss_pred CCcEEEEEeCCCCCHh-----------HH----HHHHHhcC-CCceEEEecC-CcCCCCCcccccCCCCCcCCHHHHHHH
Confidence 4799999999631100 01 12333344 4699999632 3445554321 11223455
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHh
Q 002194 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819 (954)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (954)
++|+.++++++.++. +.++++|+|||+||++++.++.++|++++++|+++|..+...
T Consensus 124 ~~~~~~~l~~~~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~--------------------- 180 (251)
T 2r8b_A 124 TGKMADFIKANREHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP--------------------- 180 (251)
T ss_dssp HHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC---------------------
T ss_pred HHHHHHHHHHHHhcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc---------------------
Confidence 788888888887764 678999999999999999999999999999999999754321
Q ss_pred cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 820 ~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
......+++|+|++||++|.++| ++++++++++++..+.++++ .+++++|.+. .+..+.+.+||.+++.
T Consensus 181 ---~~~~~~~~~P~li~~g~~D~~~~--~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~l~ 249 (251)
T 2r8b_A 181 ---KISPAKPTRRVLITAGERDPICP--VQLTKALEESLKAQGGTVET-VWHPGGHEIR-----SGEIDAVRGFLAAYGG 249 (251)
T ss_dssp ---CCCCCCTTCEEEEEEETTCTTSC--HHHHHHHHHHHHHHSSEEEE-EEESSCSSCC-----HHHHHHHHHHHGGGC-
T ss_pred ---cccccccCCcEEEeccCCCccCC--HHHHHHHHHHHHHcCCeEEE-EecCCCCccC-----HHHHHHHHHHHHHhcC
Confidence 01223457899999999999998 99999999999987777777 5666799984 3446789999998875
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-15 Score=167.21 Aligned_cols=289 Identities=12% Similarity=0.120 Sum_probs=174.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCce--eeeecCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE--IEIQGFPD 187 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~--~~lt~~~~ 187 (954)
.+..++|||||++||..+.+ ..|.||++.. +.. .......+
T Consensus 18 ~v~~l~~sp~g~~las~~~D---------------------------------~~i~iw~~~~----~~~~~~~~~~~~h 60 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGD---------------------------------RRIRIWGTEG----DSWICKSVLSEGH 60 (345)
T ss_dssp CEEEEEECTTSSCEEEEETT---------------------------------SCEEEEEEET----TEEEEEEEECSSC
T ss_pred cEEEEEECCCCCEEEEEcCC---------------------------------CeEEEEEcCC----Ccceeeeeecccc
Confidence 45678999999999998876 5799999854 221 11111112
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeec--ccCCCccccccccceeEecCCeEEEEEecCC
Q 002194 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (954)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~~~~wspDG~~l~~~~~~~ 265 (954)
...+..++|||||++|+... .++...|| +.+++....+ ...... .+..++|+|||+.|+...
T Consensus 61 ~~~v~~~~~sp~g~~l~s~s-------~D~~v~iw--~~~~~~~~~~~~~~~h~~----~v~~v~~sp~~~~l~s~s--- 124 (345)
T 3fm0_A 61 QRTVRKVAWSPCGNYLASAS-------FDATTCIW--KKNQDDFECVTTLEGHEN----EVKSVAWAPSGNLLATCS--- 124 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEE-------TTSCEEEE--EECCC-EEEEEEECCCSS----CEEEEEECTTSSEEEEEE---
T ss_pred CCcEEEEEECCCCCEEEEEE-------CCCcEEEE--EccCCCeEEEEEccCCCC----CceEEEEeCCCCEEEEEE---
Confidence 24688999999999998865 33444555 5445432222 122222 277899999999998761
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc----eeEcCCC-cccccccc
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----VKEIGPP-AVYTSLDP 339 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~----~~~l~~~-~~~~~~~~ 339 (954)
. ...|.++++ ++. ...+... ..+..++|
T Consensus 125 ------------------~----------------------------D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (345)
T 3fm0_A 125 ------------------R----------------------------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW 158 (345)
T ss_dssp ------------------T----------------------------TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred ------------------C----------------------------CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence 1 123556666 432 2233333 66788999
Q ss_pred CCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 340 SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
+|||++|+..+.+ +.+.+|+...+....+.... ++...+..++|+|||+.|+..
T Consensus 159 ~p~~~~l~s~s~d-------------~~i~~w~~~~~~~~~~~~~~----------~h~~~v~~l~~sp~g~~l~s~--- 212 (345)
T 3fm0_A 159 HPSQELLASASYD-------------DTVKLYREEEDDWVCCATLE----------GHESTVWSLAFDPSGQRLASC--- 212 (345)
T ss_dssp CSSSSCEEEEETT-------------SCEEEEEEETTEEEEEEEEC----------CCSSCEEEEEECTTSSEEEEE---
T ss_pred CCCCCEEEEEeCC-------------CcEEEEEecCCCEEEEEEec----------CCCCceEEEEECCCCCEEEEE---
Confidence 9999999988743 38999998866533222211 122445789999999976654
Q ss_pred ccCCCccccccCCCeEEEEecCCCCCCCc-----------e---EEee-cccccCceeeccCCceEEEEEeccccceEEE
Q 002194 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGP-----------E---ILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-----------~---~l~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~ 484 (954)
+..+.|.+|+.. ..+... + .+.. +...+..++|+|++..|+.++.++. .++|
T Consensus 213 ----------s~D~~v~iW~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~--i~vw 279 (345)
T 3fm0_A 213 ----------SDDRTVRIWRQY-LPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA--IRVF 279 (345)
T ss_dssp ----------ETTSCEEEEEEE-CTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC--EEEE
T ss_pred ----------eCCCeEEEeccc-cCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe--EEEE
Confidence 334466666630 111110 1 1111 3445677999999999988876554 7788
Q ss_pred EEcCCCCCCCcEE-E----ecCCCCCccCCCCCCCeeeccCCc-EEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEE
Q 002194 485 VISPGSKDVAPRI-L----FDRSSEDVYSDPGSPMMRRTSTGT-YVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFD 558 (954)
Q Consensus 485 ~~d~~~~~~~~~~-l----~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 558 (954)
..+.......+.. + ...+...+.. ++|+|++. .|+.... ...|++|+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~------v~~~p~~~~~laS~s~---------------------Dg~v~~W~ 332 (345)
T 3fm0_A 280 QEDPNSDPQQPTFSLTAHLHQAHSQDVNC------VAWNPKEPGLLASCSD---------------------DGEVAFWK 332 (345)
T ss_dssp EECTTSCTTSCCEEEEEEETTSSSSCEEE------EEECSSSTTEEEEEET---------------------TSCEEEEE
T ss_pred EeCCCCCcceeeEEEEeeecccccCcEeE------eEEeCCCceEEEEcCC---------------------CCcEEEEE
Confidence 8775542112211 1 1223333333 88999985 6655541 22488999
Q ss_pred CCCCC
Q 002194 559 INTGS 563 (954)
Q Consensus 559 ~~~g~ 563 (954)
+.+++
T Consensus 333 ~~~~~ 337 (345)
T 3fm0_A 333 YQRPE 337 (345)
T ss_dssp ECC--
T ss_pred ecCCC
Confidence 87665
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.8e-16 Score=164.89 Aligned_cols=208 Identities=15% Similarity=0.126 Sum_probs=137.0
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCC---cccHHHHHHHHC--
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR---IGSTSVLLWLAR-- 711 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~---~~~~~~~~la~~-- 711 (954)
.+.+.+++.+.+| .+.+++|+|+++++.+ ++|+||++||++.... .|.. .....+..|+++
T Consensus 39 g~~~~~~~~s~~~-~~~~~vy~P~~~~~~~--~~Pvlv~lHG~~~~~~-----------~~~~~~~~~~~~~~~l~~~g~ 104 (297)
T 1gkl_A 39 GRIVKETYTGING-TKSLNVYLPYGYDPNK--KYNIFYLMHGGGENEN-----------TIFSNDVKLQNILDHAIMNGE 104 (297)
T ss_dssp CEEEEEEEEETTE-EEEEEEEECTTCCTTS--CCEEEEEECCTTCCTT-----------STTSTTTCHHHHHHHHHHTTS
T ss_pred ceEEEEEEEcCCC-EEEEEEEeCCCCCCCC--CCCEEEEECCCCCCcc-----------hhhcccchHHHHHHHHHHcCC
Confidence 4567888988876 8999999999986543 5999999999753211 1111 012345566776
Q ss_pred --CcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC---------CCCCCcEEEEeeChHHHHHHHHHHhC
Q 002194 712 --GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---------VAHPSKIAVGGHSYGAFMTANLLAHA 780 (954)
Q Consensus 712 --G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---------~~d~~ri~l~G~S~GG~~a~~~a~~~ 780 (954)
+|+|+.+++++..+ ....+....++|++..++...... ..|+++++|+|+||||++|+.++.++
T Consensus 105 ~~~~ivv~pd~~~~~~-----~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~ 179 (297)
T 1gkl_A 105 LEPLIVVTPTFNGGNC-----TAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNC 179 (297)
T ss_dssp SCCEEEEECCSCSTTC-----CTTTHHHHHHHTHHHHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCcCCcc-----chHHHHHHHHHHHHHHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhC
Confidence 49999977654322 122333444555555544321111 13677899999999999999999999
Q ss_pred CCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHh
Q 002194 781 PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (954)
Q Consensus 781 p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~ 860 (954)
|++|+++++++|.+.... ...........+... ..+.....++++.+|+.|.. ..+++++.++|+.
T Consensus 180 p~~f~~~v~~sg~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~G~~D~~----~~~~~~l~~~L~~ 245 (297)
T 1gkl_A 180 LDYVAYFMPLSGDYWYGN-------SPQDKANSIAEAINR---SGLSKREYFVFAATGSEDIA----YANMNPQIEAMKA 245 (297)
T ss_dssp TTTCCEEEEESCCCCBSS-------SHHHHHHHHHHHHHH---HTCCTTSCEEEEEEETTCTT----HHHHHHHHHHHHT
T ss_pred chhhheeeEeccccccCC-------ccchhhhHHHHHHhh---ccCCcCcEEEEEEeCCCccc----chhHHHHHHHHHH
Confidence 999999999999753211 000000011111111 11222345677789999975 5678999999999
Q ss_pred CC----------CcEEEEEeCCCCCcC
Q 002194 861 HG----------ALCRLVILPFESHGY 877 (954)
Q Consensus 861 ~g----------~~~~~~~~~~~~H~~ 877 (954)
.| +++++.++|+++|.+
T Consensus 246 ~g~~~~~~~~~~~~~~~~~~~g~gH~~ 272 (297)
T 1gkl_A 246 LPHFDYTSDFSKGNFYFLVAPGATHWW 272 (297)
T ss_dssp STTCCBBSCTTTCCEEEEEETTCCSSH
T ss_pred cCCccccccccCCceEEEECCCCCcCH
Confidence 98 699999999999975
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-15 Score=170.41 Aligned_cols=282 Identities=11% Similarity=0.135 Sum_probs=175.4
Q ss_pred CCCCCceecCCCC-EEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEc----cCCCCC----Cce
Q 002194 109 PPLPALSFSPQRD-KILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQL----FPDGKL----GQE 179 (954)
Q Consensus 109 ~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~----~~~g~~----~~~ 179 (954)
..+..++|||||+ +||....+ +.|.+|++ .. +.. ...
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~d---------------------------------g~i~iw~~~~~~~~-~~~~~~~~~~ 91 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKN---------------------------------SVARLARIVETDQE-GKKYWKLTII 91 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETB---------------------------------TEEEEEEEEEC-------CEEEEEE
T ss_pred CceEEEEECCCCCcEEEEecCC---------------------------------ceEEEEEEecccCC-cccccccccc
Confidence 4688999999999 99887764 46888888 43 210 012
Q ss_pred eeeec-CC-------CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeE
Q 002194 180 IEIQG-FP-------DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW 251 (954)
Q Consensus 180 ~~lt~-~~-------~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w 251 (954)
..+.. +. +...+..+.|||||+.|+.... ...|.+++.++.....+...... +..+.|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~i~~~~~~~~~~~~~~~~~-----v~~~~~ 157 (425)
T 1r5m_A 92 AELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVE---------NGELRLWNKTGALLNVLNFHRAP-----IVSVKW 157 (425)
T ss_dssp EEEECCCCCC------CBCEEEEEECTTSSEEEEEET---------TSCEEEEETTSCEEEEECCCCSC-----EEEEEE
T ss_pred ccccccccccccccCCCCceEEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCeeeeccCCCcc-----EEEEEE
Confidence 22221 00 1226888999999999998652 34566667555555555433332 678999
Q ss_pred ecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee-EcC
Q 002194 252 VNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIG 329 (954)
Q Consensus 252 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-~l~ 329 (954)
+|||+.|++.. ....|.++++ +++.. .+.
T Consensus 158 ~~~~~~l~~~~-------------------------------------------------~d~~i~iwd~~~~~~~~~~~ 188 (425)
T 1r5m_A 158 NKDGTHIISMD-------------------------------------------------VENVTILWNVISGTVMQHFE 188 (425)
T ss_dssp CTTSSEEEEEE-------------------------------------------------TTCCEEEEETTTTEEEEEEC
T ss_pred CCCCCEEEEEe-------------------------------------------------cCCeEEEEECCCCcEEEEee
Confidence 99999888761 1123556666 55332 222
Q ss_pred CC-cc---------------ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCc
Q 002194 330 PP-AV---------------YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPI 392 (954)
Q Consensus 330 ~~-~~---------------~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~ 392 (954)
.. .. +..+.|+|++. ++....+ +.+.+||+..++. ..+..+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------g~i~~~d~~~~~~~~~~~~~-------- 246 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPK-------------GAIFVYQITEKTPTGKLIGH-------- 246 (425)
T ss_dssp CC---------------CCCBSCCEEEETTE-EEEECGG-------------GCEEEEETTCSSCSEEECCC--------
T ss_pred ccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCC-------------CeEEEEEcCCCceeeeeccC--------
Confidence 22 22 78899999876 4443322 3899999986533 222221
Q ss_pred cccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEE
Q 002194 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVY 472 (954)
Q Consensus 393 ~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~ 472 (954)
...+..++|+||++.++.. +..+.|.+|++ ..+.....+..+...+..+.|+||| .|+.
T Consensus 247 -----~~~i~~~~~~~~~~~l~~~-------------~~d~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~ 305 (425)
T 1r5m_A 247 -----HGPISVLEFNDTNKLLLSA-------------SDDGTLRIWHG--GNGNSQNCFYGHSQSIVSASWVGDD-KVIS 305 (425)
T ss_dssp -----SSCEEEEEEETTTTEEEEE-------------ETTSCEEEECS--SSBSCSEEECCCSSCEEEEEEETTT-EEEE
T ss_pred -----CCceEEEEECCCCCEEEEE-------------cCCCEEEEEEC--CCCccceEecCCCccEEEEEECCCC-EEEE
Confidence 1345679999999966654 33557889986 3334445555567778889999999 5555
Q ss_pred EEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCC
Q 002194 473 ESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIP 552 (954)
Q Consensus 473 ~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (954)
...+ ..|.++++.++ +...........+.. +.|+|+|++|+.... ..
T Consensus 306 ~~~d----~~i~i~d~~~~--~~~~~~~~~~~~i~~------~~~s~~~~~l~~~~~---------------------dg 352 (425)
T 1r5m_A 306 CSMD----GSVRLWSLKQN--TLLALSIVDGVPIFA------GRISQDGQKYAVAFM---------------------DG 352 (425)
T ss_dssp EETT----SEEEEEETTTT--EEEEEEECTTCCEEE------EEECTTSSEEEEEET---------------------TS
T ss_pred EeCC----CcEEEEECCCC--cEeEecccCCccEEE------EEEcCCCCEEEEEEC---------------------CC
Confidence 5433 34677777664 333333333333333 789999998887762 12
Q ss_pred eEEEEECCCCC
Q 002194 553 FLDLFDINTGS 563 (954)
Q Consensus 553 ~l~~~d~~~g~ 563 (954)
.|++||+.+++
T Consensus 353 ~i~i~~~~~~~ 363 (425)
T 1r5m_A 353 QVNVYDLKKLN 363 (425)
T ss_dssp CEEEEECHHHH
T ss_pred eEEEEECCCCc
Confidence 48899987665
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-14 Score=161.05 Aligned_cols=275 Identities=9% Similarity=-0.032 Sum_probs=175.4
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
...++|||||++|++..... ........|+++|+++++.......... ...++|+|||+.++++..
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~--~~~~~~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~------- 108 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQS--RKLDKGGVVYRLDPVTLEVTQAIHNDLK-----PFGATINNTTQTLWFGNT------- 108 (353)
T ss_dssp EEEEEEETTTTEEEEEECCC--TTTEESEEEEEECTTTCCEEEEEEESSC-----CCSEEEETTTTEEEEEET-------
T ss_pred ccceEECCCCCEEEEEcCCC--cCCCCCccEEEEcCCCCeEEEEEecCCC-----cceEEECCCCCEEEEEec-------
Confidence 45689999999997765311 0001267899999998877655443332 458899999998887611
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-c---------cccccc
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-A---------VYTSLD 338 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~-~---------~~~~~~ 338 (954)
....|+++|+ +|+. ..+... . ....+.
T Consensus 109 -----------------------------------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (353)
T 3vgz_A 109 -----------------------------------------VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELV 147 (353)
T ss_dssp -----------------------------------------TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEE
T ss_pred -----------------------------------------CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEE
Confidence 1235888888 6654 333222 1 145689
Q ss_pred cCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002194 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (954)
Q Consensus 339 ~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~ 418 (954)
|||||++|++..... ...|++||.++++......... ..+..++|+|||+.+++.
T Consensus 148 ~s~dg~~l~~~~~~~-----------~~~i~~~d~~~~~~~~~~~~~~------------~~~~~~~~s~dg~~l~~~-- 202 (353)
T 3vgz_A 148 ADDATNTVYISGIGK-----------ESVIWVVDGGNIKLKTAIQNTG------------KMSTGLALDSEGKRLYTT-- 202 (353)
T ss_dssp EETTTTEEEEEEESS-----------SCEEEEEETTTTEEEEEECCCC------------TTCCCCEEETTTTEEEEE--
T ss_pred ECCCCCEEEEEecCC-----------CceEEEEcCCCCceEEEecCCC------------CccceEEECCCCCEEEEE--
Confidence 999999988876322 2379999998766543322110 123568999999977665
Q ss_pred eccCCCccccccCCCeEEEEecCCCCCCCce-EEee----cccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCC
Q 002194 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHK----LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV 493 (954)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~-~l~~----~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~ 493 (954)
...+.+++++. .+++.. .+.. .......++|+|||+.|++....+ ..|+++|+.++
T Consensus 203 -----------~~~~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~---~~v~~~d~~~~-- 263 (353)
T 3vgz_A 203 -----------NADGELITIDT---ADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA---AEVLVVDTRNG-- 263 (353)
T ss_dssp -----------CTTSEEEEEET---TTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS---SEEEEEETTTC--
T ss_pred -----------cCCCeEEEEEC---CCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC---CEEEEEECCCC--
Confidence 23457889985 444333 3322 122234589999999987765433 46899999875
Q ss_pred CcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcc
Q 002194 494 APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKE 573 (954)
Q Consensus 494 ~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 573 (954)
+........ ... .+.|+|||++++.... ....|++||+++++..........
T Consensus 264 ~~~~~~~~~--~~~------~~~~s~dg~~l~v~~~--------------------~~~~v~~~d~~~~~~~~~~~~~~~ 315 (353)
T 3vgz_A 264 NILAKVAAP--ESL------AVLFNPARNEAYVTHR--------------------QAGKVSVIDAKSYKVVKTFDTPTH 315 (353)
T ss_dssp CEEEEEECS--SCC------CEEEETTTTEEEEEET--------------------TTTEEEEEETTTTEEEEEEECCSE
T ss_pred cEEEEEEcC--CCc------eEEECCCCCEEEEEEC--------------------CCCeEEEEECCCCeEEEEEecCCC
Confidence 222222211 111 1789999998776651 123599999998887665543321
Q ss_pred cccceeEEeccCCccccccccCCEEEEEEec
Q 002194 574 KYYETTVALMSDQTEGDLYLNQLKILTSKES 604 (954)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s 604 (954)
.. ..+|+|||+.+++....
T Consensus 316 -----~~-------~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 316 -----PN-------SLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -----EE-------EEEECTTSCEEEEEEEC
T ss_pred -----CC-------eEEEcCCCCEEEEEEcc
Confidence 11 25689999988887776
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-15 Score=168.39 Aligned_cols=243 Identities=17% Similarity=0.153 Sum_probs=154.4
Q ss_pred CceEEEEEEcCC--C--eEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH-HC
Q 002194 637 LQKELIKYQRKD--G--VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-AR 711 (954)
Q Consensus 637 ~~~~~~~~~~~~--g--~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~ 711 (954)
....++.|.+.| | ..+.+++++|.+. +++.|+|++.||...... ..+.........++..|+ ++
T Consensus 41 ~~~~~i~Y~s~d~~G~~~~~~g~l~~P~~~----~~~~PvV~~~HG~~~~~~-------~~ps~~~~~~~~~~~~lal~~ 109 (377)
T 4ezi_A 41 LQLYKINYKTQSPDGNLTIASGLVAMPIHP----VGQVGIISYQHGTRFERN-------DVPSRNNEKNYIYLAAYGNSA 109 (377)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEESSC----SSCEEEEEEECCCCCSTT-------CSGGGCCGGGHHHHHHHTTTT
T ss_pred cEEEEEEEEEECCCCCEEEEEEEEEECCCC----CCCCcEEEEeCCCcCCcc-------cCCCcCcccchHHHHHHHHhC
Confidence 456778887765 4 4688999999862 246999999999752110 001000001123456688 99
Q ss_pred CcEEEEcCCCCCCCCCCccc-c-----hhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCC--
Q 002194 712 GFAILGGPTTPIIGEGDEEA-N-----DRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPH-- 782 (954)
Q Consensus 712 G~~V~~~~~~~~~G~G~~~~-~-----~~~~~~~~~D~~~av~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-- 782 (954)
||+|+.+|++ |+|.+.. . .......+.|.+.++..+.+. +..+.++|+++|||+||+++++++...|+
T Consensus 110 Gy~Vv~~D~r---G~G~s~~~~~~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~ 186 (377)
T 4ezi_A 110 GYMTVMPDYL---GLGDNELTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEY 186 (377)
T ss_dssp CCEEEEECCT---TSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHC
T ss_pred CcEEEEeCCC---CCCCCCCCCcccccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhC
Confidence 9999995554 5554432 1 111223345555555444443 44467899999999999999999887543
Q ss_pred ---cccEEEEeccCCCCCCC-------C--C-----C------------Ccc-------ccchhhh--------------
Q 002194 783 ---LFCCGIARSGAYNRTLT-------P--F-----G------------FQN-------EDRTLWE-------------- 812 (954)
Q Consensus 783 ---~~~a~v~~~~~~~~~~~-------~--~-----~------------~~~-------~~~~~~~-------------- 812 (954)
.++++++.++++|.... . . + +.. ......+
T Consensus 187 ~~l~l~g~~~~~~p~dl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~yp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 266 (377)
T 4ezi_A 187 PDLPVSAVAPGSAPYGWEETMHFVMLEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTLIPELMDGYHAVDEILQ 266 (377)
T ss_dssp TTSCCCEEEEESCCCCHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHCCSSCHHHHBCTTHHHHHHHHTSSCSCHHHHHH
T ss_pred CCCceEEEEecCcccCHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHhccCHHHHhCHHHHHHHHHHhhcccchhhhhh
Confidence 58899999887662110 0 0 0 000 0000000
Q ss_pred ----------cHH---HHH-hcCc-cc--------ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEE
Q 002194 813 ----------ATS---TYV-EMSP-FM--------SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869 (954)
Q Consensus 813 ----------~~~---~~~-~~sp-~~--------~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~ 869 (954)
... .+. ..+| +. .-.++++|+||+||++|.+|| +.++++++++++..|. ++++.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~Pvli~hG~~D~~Vp--~~~~~~l~~~l~~~G~-v~~~~ 343 (377)
T 4ezi_A 267 ALPQDPLLIFQPKFSNGIISKTDRNTEILKINFNHYDFKPTAPLLLVGTKGDRDVP--YAGAEMAYHSFRKYSD-FVWIK 343 (377)
T ss_dssp HSCSSGGGGBCHHHHHHHHTTCSTTHHHHHHHHCCCCSCCSSCEEEEECTTCSSSC--HHHHHHHHHHHHTTCS-CEEEE
T ss_pred ccCCCHHHHhchhhhhhcccccchHHHHHHHHhcccCCCCCCCEEEEecCCCCCCC--HHHHHHHHHHHHhcCC-EEEEE
Confidence 000 000 0111 10 012457899999999999999 9999999999999999 99999
Q ss_pred eCC--CCCcCCCcccHHHHHHHHHHHHHHhccc
Q 002194 870 LPF--ESHGYAARESIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 870 ~~~--~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (954)
|++ .+|... .......+++||++++..
T Consensus 344 ~~~~~~~H~~~----~~~~~~~~~~wl~~~~~~ 372 (377)
T 4ezi_A 344 SVSDALDHVQA----HPFVLKEQVDFFKQFERQ 372 (377)
T ss_dssp ESCSSCCTTTT----HHHHHHHHHHHHHHHHTS
T ss_pred cCCCCCCccCh----HHHHHHHHHHHHHHhhcc
Confidence 999 899764 245678899999999864
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.70 E-value=6e-16 Score=167.68 Aligned_cols=227 Identities=15% Similarity=0.145 Sum_probs=145.2
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
..+.+++.. +|..+....+.+.. .++..|+||++||++.... .| ...+..|+++||.|++
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~p~vv~~hG~~~~~~-----------~~----~~~~~~l~~~g~~v~~ 78 (315)
T 4f0j_A 19 PVHYLDFTS-QGQPLSMAYLDVAP----KKANGRTILLMHGKNFCAG-----------TW----ERTIDVLADAGYRVIA 78 (315)
T ss_dssp CCEEEEEEE-TTEEEEEEEEEECC----SSCCSCEEEEECCTTCCGG-----------GG----HHHHHHHHHTTCEEEE
T ss_pred cceeEEEec-CCCCeeEEEeecCC----CCCCCCeEEEEcCCCCcch-----------HH----HHHHHHHHHCCCeEEE
Confidence 466777764 56666655554422 1224699999999642111 11 2456778889999999
Q ss_pred cCCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCC
Q 002194 718 GPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (954)
.+.+|+|.+.... .......+|+.++++.+ +.+++.++|||+||.+++.++.++|++++++|+++|..
T Consensus 79 ---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 149 (315)
T 4f0j_A 79 ---VDQVGFCKSSKPAHYQYSFQQLAANTHALLERL------GVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIG 149 (315)
T ss_dssp ---ECCTTSTTSCCCSSCCCCHHHHHHHHHHHHHHT------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSC
T ss_pred ---eecCCCCCCCCCCccccCHHHHHHHHHHHHHHh------CCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcc
Confidence 5666777775432 23344455555554442 44689999999999999999999999999999999853
Q ss_pred CCCCC----CCCC-------------------------cc---ccchhhh---------------------cHHHHHhcC
Q 002194 795 NRTLT----PFGF-------------------------QN---EDRTLWE---------------------ATSTYVEMS 821 (954)
Q Consensus 795 ~~~~~----~~~~-------------------------~~---~~~~~~~---------------------~~~~~~~~s 821 (954)
..... .... .. .....|. ........+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (315)
T 4f0j_A 150 LEDWKALGVPWRSVDDWYRRDLQTSAEGIRQYQQATYYAGEWRPEFDRWVQMQAGMYRGKGRESVAWNSALTYDMIFTQP 229 (315)
T ss_dssp SSCHHHHTCCCCCHHHHHHHHTTCCHHHHHHHHHHHTSTTCCCGGGHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHCC
T ss_pred cCCcccccchhhhhHHHHhhcccCChHHHHHHHHHHHhccccCCchHHHHHHHHHHhhccCcchhhHHHHHhcCccccch
Confidence 21100 0000 00 0000000 001112223
Q ss_pred cccccCCCCCCEEEEEeCCCCCCCCchHHH------------HHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHH
Q 002194 822 PFMSANKLKKPILLVHGEEDNNSGTLTMQS------------DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889 (954)
Q Consensus 822 p~~~~~~~~~P~Lii~G~~D~~v~~~~~~~------------~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~ 889 (954)
....+.++++|+|++||++|..+| ..+. .+..+.+.....++++++++++||... .++...+.+.
T Consensus 230 ~~~~l~~~~~P~lii~G~~D~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~p~~~~~~ 306 (315)
T 4f0j_A 230 VVYELDRLQMPTLLLIGEKDNTAI--GKDAAPAELKARLGNYAQLGKDAARRIPQATLVEFPDLGHTPQ-IQAPERFHQA 306 (315)
T ss_dssp CGGGGGGCCSCEEEEEETTCCCCT--TGGGSCHHHHTTSCCHHHHHHHHHHHSTTEEEEEETTCCSCHH-HHSHHHHHHH
T ss_pred hhhhcccCCCCeEEEEecCCCcCc--cccccccccccccccchhhhhHHHhhcCCceEEEeCCCCcchh-hhCHHHHHHH
Confidence 445678889999999999999987 5444 455555555556789999999999863 5566777788
Q ss_pred HHHHHHH
Q 002194 890 TDRWLQK 896 (954)
Q Consensus 890 i~~fl~~ 896 (954)
|.+||++
T Consensus 307 i~~fl~~ 313 (315)
T 4f0j_A 307 LLEGLQT 313 (315)
T ss_dssp HHHHHCC
T ss_pred HHHHhcc
Confidence 8888764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-16 Score=172.13 Aligned_cols=284 Identities=10% Similarity=0.050 Sum_probs=161.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++||..+.+ .. ...+..|++|+... +...............
T Consensus 44 ~V~~v~fSpDG~~las~s~d----------------------~~-----~~wd~~v~~~~~~~-~~~~~~~~~~~~~~~~ 95 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSL----------------------SS-----RTWGGSIWVFKDPE-GAPNESLCTAGVQTEA 95 (357)
T ss_dssp EEEEEEECSSSCEEEEEECS----------------------SS-----SSCCEEEEEESSCC----CGGGCSEEEECSS
T ss_pred CEEEEEECCCCCEEEEEcCC----------------------CC-----ccccCeEEEEECCC-CCcceeEecccCCCCC
Confidence 46789999999999998764 00 01124688888743 2111111111111223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+...+|+||++.|+ .. . ...|.++|+.+++...+...........+..++|+|||+.|+...
T Consensus 96 ~V~~~~~s~d~~~l~-~s-------~--dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs------- 158 (357)
T 4g56_B 96 GVTDVAWVSEKGILV-AS-------D--SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG------- 158 (357)
T ss_dssp CEEEEEEETTTEEEE-EE-------T--TSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE-------
T ss_pred CEEEEEEcCCCCEEE-EE-------C--CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe-------
Confidence 588899999987554 33 2 235666677666543322111111122267899999999998761
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee-EcCCC-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-~l~~~-~~~~~~~~SpDGk~l 346 (954)
....|.++|+ +++.. .+... ..+..++|+||++.+
T Consensus 159 ------------------------------------------~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 159 ------------------------------------------KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp ------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred ------------------------------------------CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence 1234667788 66543 34433 677889999999765
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
+++... ++.|.+||+..++........ .....+..++|+||+..++...
T Consensus 197 ~~s~~~------------dg~v~~wd~~~~~~~~~~~~~----------~~~~~v~~v~~sp~~~~~la~g--------- 245 (357)
T 4g56_B 197 FLSCGE------------DGRILLWDTRKPKPATRIDFC----------ASDTIPTSVTWHPEKDDTFACG--------- 245 (357)
T ss_dssp EEEEET------------TSCEEECCTTSSSCBCBCCCT----------TCCSCEEEEEECTTSTTEEEEE---------
T ss_pred eeeecc------------CCceEEEECCCCceeeeeeec----------cccccccchhhhhcccceEEEe---------
Confidence 444422 237999999855432211111 1112346789999987655541
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCc
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDV 506 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~ 506 (954)
+..+.|.+|++ .++...+.+......+..++|+|||+.++++...++ .|+++|++++ +... +..+...+
T Consensus 246 ---~~d~~i~~wd~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~---~i~iwd~~~~--~~~~-~~~H~~~V 314 (357)
T 4g56_B 246 ---DETGNVSLVNI--KNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDC---TVAVLDADFS--EVFR-DLSHRDFV 314 (357)
T ss_dssp ---ESSSCEEEEES--SCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTS---CEEEECTTSC--EEEE-ECCCSSCE
T ss_pred ---ecccceeEEEC--CCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCC---EEEEEECCCC--cEeE-ECCCCCCE
Confidence 23457889996 344445566666777889999999866544444433 2555677764 2222 22333334
Q ss_pred cCCCCCCCeeecc-CCcEEEEEE
Q 002194 507 YSDPGSPMMRRTS-TGTYVIAKI 528 (954)
Q Consensus 507 ~~~~~~~~~~~sp-dG~~l~~~~ 528 (954)
.. ++|+| ||++|+...
T Consensus 315 ~~------vafsP~d~~~l~s~s 331 (357)
T 4g56_B 315 TG------VAWSPLDHSKFTTVG 331 (357)
T ss_dssp EE------EEECSSSTTEEEEEE
T ss_pred EE------EEEeCCCCCEEEEEc
Confidence 44 88998 788887665
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-15 Score=168.67 Aligned_cols=241 Identities=12% Similarity=0.075 Sum_probs=163.1
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
+..++|||||++|+++... + ..|++|++.+ ++.... +..+..
T Consensus 34 ~~~~~~s~dg~~l~~~~~~----------------------d----------~~i~v~d~~~----~~~~~~--~~~~~~ 75 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAH----------------------S----------NDVSIIDTAT----NNVIAT--VPAGSS 75 (391)
T ss_dssp EEEEEECTTSSEEEEEEGG----------------------G----------TEEEEEETTT----TEEEEE--EECSSS
T ss_pred cceEEECCCCCEEEEECCC----------------------C----------CeEEEEECCC----CeEEEE--EECCCC
Confidence 4578999999998776531 0 3799999854 333222 222236
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
+..++|||||++|+++.. ....|+++|+.+++.......... +..++|+|||+.|+++..
T Consensus 76 v~~~~~spdg~~l~~~~~--------~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~------- 135 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNM--------ASSTLSVIDTTSNTVAGTVKTGKS-----PLGLALSPDGKKLYVTNN------- 135 (391)
T ss_dssp EEEEEECTTSSEEEEEET--------TTTEEEEEETTTTEEEEEEECSSS-----EEEEEECTTSSEEEEEET-------
T ss_pred ccceEECCCCCEEEEEEC--------CCCEEEEEECCCCeEEEEEeCCCC-----cceEEECCCCCEEEEEeC-------
Confidence 788999999999988642 246799999999887666554432 568999999998876610
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCC-CccccccccCCCCcEEEE
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-PAVYTSLDPSPDEKYILI 348 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~-~~~~~~~~~SpDGk~l~~ 348 (954)
....|+++|+ +++...... ......++|+|||++|++
T Consensus 136 -----------------------------------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~ 174 (391)
T 1l0q_A 136 -----------------------------------------GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYV 174 (391)
T ss_dssp -----------------------------------------TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEE
T ss_pred -----------------------------------------CCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEE
Confidence 2245888898 775444333 355678899999999977
Q ss_pred EeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (954)
+... .+.+++||+.+++........ ..+..++|+|||+.+++....
T Consensus 175 ~~~~------------~~~v~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~~g~~l~~~~~~--------- 220 (391)
T 1l0q_A 175 ANFD------------SMSISVIDTVTNSVIDTVKVE-------------AAPSGIAVNPEGTKAYVTNVD--------- 220 (391)
T ss_dssp EETT------------TTEEEEEETTTTEEEEEEECS-------------SEEEEEEECTTSSEEEEEEEC---------
T ss_pred EeCC------------CCEEEEEECCCCeEEEEEecC-------------CCccceEECCCCCEEEEEecC---------
Confidence 6533 237999999876654433221 234578999999977665210
Q ss_pred ccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 429 VTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 429 ~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
...+.|++|++ .+++..........+..++|+|||+.|+++...+ ..|+++|+.++
T Consensus 221 -~~~~~v~~~d~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d---~~v~v~d~~~~ 276 (391)
T 1l0q_A 221 -KYFNTVSMIDT---GTNKITARIPVGPDPAGIAVTPDGKKVYVALSFX---NTVSVIDTATN 276 (391)
T ss_dssp -SSCCEEEEEET---TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT---TEEEEEETTTT
T ss_pred -cCCCcEEEEEC---CCCeEEEEEecCCCccEEEEccCCCEEEEEcCCC---CEEEEEECCCC
Confidence 13568999996 4444333333344466789999999998776544 35777888775
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-16 Score=167.51 Aligned_cols=237 Identities=14% Similarity=0.147 Sum_probs=153.4
Q ss_pred CCceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcE
Q 002194 636 SLQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (954)
Q Consensus 636 ~~~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (954)
..+.+.+++.+. .|.++.++ |+|++ .|+||++||+.... ....|... ....+.+++.||+
T Consensus 8 ~~~~~~~~~~S~~~~~~~~~~-~~P~~--------~p~vvllHG~~~~~---------~~~~w~~~-~~~~~~~~~~~~~ 68 (280)
T 1r88_A 8 AAPYENLMVPSPSMGRDIPVA-FLAGG--------PHAVYLLDAFNAGP---------DVSNWVTA-GNAMNTLAGKGIS 68 (280)
T ss_dssp CCCCEEEEEEETTTTEEEEEE-EECCS--------SSEEEEECCSSCCS---------SSCHHHHT-SCHHHHHTTSSSE
T ss_pred CCCEEEEEEECcccCCcceEE-EeCCC--------CCEEEEECCCCCCC---------Chhhhhhc-ccHHHHHhcCCeE
Confidence 345778888875 68899998 78864 27999999973100 00011000 0134556778999
Q ss_pred EEEcCCCCCCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEecc
Q 002194 715 ILGGPTTPIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (954)
Q Consensus 715 V~~~~~~~~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (954)
|+.++..+..++..... ...+.....+|+... +.++..+|+++++|+|+||||++|+.++.++|++|+++|+++|
T Consensus 69 vv~pd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg 145 (280)
T 1r88_A 69 VVAPAGGAYSMYTNWEQDGSKQWDTFLSAELPDW---LAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSG 145 (280)
T ss_dssp EEEECCCTTSTTSBCSSCTTCBHHHHHHTHHHHH---HHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred EEEECCCCCCccCCCCCCCCCcHHHHHHHHHHHH---HHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECC
Confidence 99977744333321111 122323334454444 4443447888999999999999999999999999999999999
Q ss_pred CCCCCCCCC-C-----Ccc----ccchhhhc--HHHHHhcCcccccCCC---CCCEEEEE----eCCCCC-------CCC
Q 002194 793 AYNRTLTPF-G-----FQN----EDRTLWEA--TSTYVEMSPFMSANKL---KKPILLVH----GEEDNN-------SGT 846 (954)
Q Consensus 793 ~~~~~~~~~-~-----~~~----~~~~~~~~--~~~~~~~sp~~~~~~~---~~P~Lii~----G~~D~~-------v~~ 846 (954)
.++...... . ... .....|.. ...+...+|+..+.++ ..|+||+| |+.|.. ++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~- 224 (280)
T 1r88_A 146 FLYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEA- 224 (280)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHCCCTHHHHCCGGGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHH-
T ss_pred ccCcCCccchhhHHHHhhhccccchhhhcCCCchhhhHhcCHHHHHHhhhccCCeEEEEeccCCCCCCcccccchhHHH-
Confidence 876422100 0 000 00001111 1234556777666555 57999999 999983 46
Q ss_pred chHHHHHHHHHHHhCC-CcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 847 LTMQSDRFFNALKGHG-ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 847 ~~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
..++++++++|+..| +++++.+|++++|.+.. ....+...+.||.+-+.
T Consensus 225 -~~~~~~~~~~L~~~g~~~~~~~~~~~g~H~~~~---w~~~l~~~l~~~~~~~~ 274 (280)
T 1r88_A 225 -MGNSRMFYNQYRSVGGHNGHFDFPASGDNGWGS---WAPQLGAMSGDIVGAIR 274 (280)
T ss_dssp -HHHHHHHHHHHHHTTCCSEEEECCSSCCSSHHH---HHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHCCCcceEEEecCCCCcChhH---HHHHHHHHHHHHHHHHh
Confidence 889999999999999 99999999888998632 23445566677766553
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.3e-15 Score=167.79 Aligned_cols=278 Identities=9% Similarity=0.043 Sum_probs=172.1
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
...++|||||++|+....+ +.+++|++.. +..... +.....
T Consensus 59 ~~~~~~s~~g~~l~~~~~d---------------------------------~~v~i~d~~~----~~~~~~--~~~~~~ 99 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLD---------------------------------GHDFLFNTII----RDGSKM--LKRADY 99 (420)
T ss_dssp CTTCEEEEEETTEEEEEET---------------------------------TEEEEEECCS----EETTTT--SCSCCE
T ss_pred ccceeeeecCCeEEEEEcC---------------------------------CcEEEEEecc----cceeeE--EecCCc
Confidence 4578999999999998875 4789999853 221111 222234
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
.....|+|||+.|+.... ...|.++++++++........... +..++|+|||+.|+...
T Consensus 100 ~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~s-------- 158 (420)
T 3vl1_A 100 TAVDTAKLQMRRFILGTT---------EGDIKVLDSNFNLQREIDQAHVSE----ITKLKFFPSGEALISSS-------- 158 (420)
T ss_dssp EEEEEECSSSCEEEEEET---------TSCEEEECTTSCEEEEETTSSSSC----EEEEEECTTSSEEEEEE--------
T ss_pred eEEEEEecCCCEEEEEEC---------CCCEEEEeCCCcceeeecccccCc----cEEEEECCCCCEEEEEe--------
Confidence 455679999999998652 456788888888776664333322 77899999999888761
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-ccccccccCCCCcEEE
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYIL 347 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~-~~~~~~~~SpDGk~l~ 347 (954)
....|.++++ +++ ...+... ..+..++|+|||+.|+
T Consensus 159 -----------------------------------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 197 (420)
T 3vl1_A 159 -----------------------------------------QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197 (420)
T ss_dssp -----------------------------------------TTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEE
T ss_pred -----------------------------------------CCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEE
Confidence 1235778888 664 4445444 7788999999999999
Q ss_pred EEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCccc-C-Ccc---------ccccccCccceeeccCCCCceE
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAED-I-PIA---------FNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~-~-p~~---------~~~~~~g~~~~~wspDg~~i~~ 415 (954)
..+.+ +.+.+||+..++. ..+........ + ... .......+..++|+|||+.++.
T Consensus 198 s~~~d-------------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 264 (420)
T 3vl1_A 198 SASLD-------------GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 264 (420)
T ss_dssp EEETT-------------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE
T ss_pred EEcCC-------------CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE
Confidence 87743 3799999986554 33332211100 0 000 0011234567889999987765
Q ss_pred EEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe-ecccccCceeeccCCc-eEEEEEeccccceEEEEEcCCCCCC
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDDSL-ALVYESWYKTRRTRTWVISPGSKDV 493 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~l~~~d~~~~~~ 493 (954)
. ...+.|.+|++ ..+.....+. .+...+..++|+|+|+ .|+.. ..++ .|.++|+.++..
T Consensus 265 ~-------------~~dg~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g-~~dg---~i~vwd~~~~~~ 325 (420)
T 3vl1_A 265 G-------------HVSGVITVHNV--FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG-YENG---MLAQWDLRSPEC 325 (420)
T ss_dssp E-------------ETTSCEEEEET--TTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE-ETTS---EEEEEETTCTTS
T ss_pred E-------------cCCCeEEEEEC--CCCceeEEcccccCCCceeEEEeCCCCCEEEEE-eCCC---eEEEEEcCCCcC
Confidence 5 33557899996 2333333332 2455678899999999 55554 3332 466667766522
Q ss_pred CcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 494 APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 494 ~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
....+.......+. ..++++|++++...
T Consensus 326 ~~~~~~~~~~~~v~-------~~~~~~~~~l~s~~ 353 (420)
T 3vl1_A 326 PVGEFLINEGTPIN-------NVYFAAGALFVSSG 353 (420)
T ss_dssp CSEEEEESTTSCEE-------EEEEETTEEEEEET
T ss_pred chhhhhccCCCCce-------EEEeCCCCEEEEec
Confidence 22333322222222 23566777666543
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.2e-17 Score=170.86 Aligned_cols=225 Identities=13% Similarity=0.079 Sum_probs=143.2
Q ss_pred CceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHH-HHHCC--
Q 002194 637 LQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL-WLARG-- 712 (954)
Q Consensus 637 ~~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-la~~G-- 712 (954)
...+.+++.+. .|.++.+++|+|+++++.+ ++|+|+++||++... ... .+ ...... .++.|
T Consensus 16 ~~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~--~~Pvl~~lhG~~~~~-----~~~----~~----~~~~~~~~~~~g~~ 80 (275)
T 2qm0_A 16 SNTEQWKMYSKLEGKEYQIHISKPKQPAPDS--GYPVIYVLDGNAFFQ-----TFH----EA----VKIQSVRAEKTGVS 80 (275)
T ss_dssp TTEEEEEEECTTTCCEEEEEEECCSSCCCTT--CEEEEEEESHHHHHH-----HHH----HH----HHHHGGGHHHHCCC
T ss_pred CCceEEEEEecCCCCEEEEEEECCCCCCCCC--CccEEEEecChHHHH-----HHH----HH----HHHHhhcchhcCCC
Confidence 35778888886 7899999999999987654 599999999963100 000 00 001111 23467
Q ss_pred -cEEEEcCCCCCCCC---------CCccc-------------chhhHHHHHHH-H-HHHHHHHHHcCCCCCCcEEEEeeC
Q 002194 713 -FAILGGPTTPIIGE---------GDEEA-------------NDRFVEQLVAC-A-EAAVEEVVRRGVAHPSKIAVGGHS 767 (954)
Q Consensus 713 -~~V~~~~~~~~~G~---------G~~~~-------------~~~~~~~~~~D-~-~~av~~l~~~~~~d~~ri~l~G~S 767 (954)
++|+.+++.+...+ +.... ........+.+ + .+.+.++.++..+|+++++|+|||
T Consensus 81 ~~ivV~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S 160 (275)
T 2qm0_A 81 PAIIVGVGYPIEGAFSGEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHX 160 (275)
T ss_dssp CCEEEEEECSCSSSCCHHHHHHHHCSSCCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEET
T ss_pred CeEEEEECCCCCCcCcccccccccCCCCccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEec
Confidence 99998666442111 10000 00000111222 1 234556666666888999999999
Q ss_pred hHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCc
Q 002194 768 YGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTL 847 (954)
Q Consensus 768 ~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~ 847 (954)
|||++|+.++.++|+.|+++++.+|.+.+. . .......+.+.... .......|++++||+.|..++
T Consensus 161 ~GG~~a~~~~~~~p~~f~~~~~~s~~~~~~-------~--~~~~~~~~~~~~~~---~~~~~~~~~~l~~G~~D~~~~-- 226 (275)
T 2qm0_A 161 LGGLFALHILFTNLNAFQNYFISSPSIWWN-------N--KSVLEKEENLIIEL---NNAKFETGVFLTVGSLEREHM-- 226 (275)
T ss_dssp HHHHHHHHHHHHCGGGCSEEEEESCCTTHH-------H--HGGGGGTTHHHHHH---HTCSSCEEEEEEEETTSCHHH--
T ss_pred chhHHHHHHHHhCchhhceeEEeCceeeeC-------h--HHHHHHHHHHHhhh---cccCCCceEEEEeCCcccchh--
Confidence 999999999999999999999999874210 0 00001111111110 023456799999999999877
Q ss_pred hHHHHHHHHHH---HhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 848 TMQSDRFFNAL---KGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 848 ~~~~~~~~~~l---~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
..++++++++| +..|+++++.++|+++|+... ...+...++||
T Consensus 227 ~~~~~~~~~~L~~~~~~g~~~~~~~~~g~~H~~~~----~~~l~~~l~~l 272 (275)
T 2qm0_A 227 VVGANELSERLLQVNHDKLKFKFYEAEGENHASVV----PTSLSKGLRFI 272 (275)
T ss_dssp HHHHHHHHHHHHHCCCTTEEEEEEEETTCCTTTHH----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcccCCceEEEEECCCCCccccH----HHHHHHHHHHH
Confidence 89999999999 567889999999999996531 22334455554
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-14 Score=158.81 Aligned_cols=276 Identities=9% Similarity=-0.021 Sum_probs=166.5
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce-eecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~ 241 (954)
..|.+|++.+ ++........ .... .++|||||++|+++.. +...|+++|+++++. .........
T Consensus 20 ~~v~~~d~~~----~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~--------~~~~i~~~d~~~~~~~~~~~~~~~~- 84 (331)
T 3u4y_A 20 RRISFFSTDT----LEILNQITLG-YDFV-DTAITSDCSNVVVTSD--------FCQTLVQIETQLEPPKVVAIQEGQS- 84 (331)
T ss_dssp TEEEEEETTT----CCEEEEEECC-CCEE-EEEECSSSCEEEEEES--------TTCEEEEEECSSSSCEEEEEEECSS-
T ss_pred CeEEEEeCcc----cceeeeEEcc-CCcc-eEEEcCCCCEEEEEeC--------CCCeEEEEECCCCceeEEecccCCC-
Confidence 3789999854 3333222222 2245 8999999998887653 245999999998875 332222222
Q ss_pred ccccccc-eeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEE
Q 002194 242 LNAIFDN-FVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (954)
Q Consensus 242 ~~~~~~~-~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~ 320 (954)
... ++|+|||++|+.. . . .+ +...|++++
T Consensus 85 ----~~~~~~~s~dg~~l~~~-~---------------------~-----------------~~-------~~~~i~v~d 114 (331)
T 3u4y_A 85 ----SMADVDITPDDQFAVTV-T---------------------G-----------------LN-------HPFNMQSYS 114 (331)
T ss_dssp ----CCCCEEECTTSSEEEEC-C---------------------C-----------------SS-------SSCEEEEEE
T ss_pred ----CccceEECCCCCEEEEe-c---------------------C-----------------CC-------CcccEEEEE
Confidence 335 8999999999832 0 0 00 112688899
Q ss_pred e-CCceeEc-CCCccccccccCCCCcEEEEEeecCCcccccccCCCCcc-eEEEeccCc-eEEEeccCCCcccCCccccc
Q 002194 321 L-DGTVKEI-GPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQ-VGVWTTDGI-FVRELCDLPLAEDIPIAFNS 396 (954)
Q Consensus 321 ~-~G~~~~l-~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~-l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~ 396 (954)
+ +++.... ........++|||||++|++..... .. +.+|+++.. .......... .
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------------~~~i~~~~~~~~g~~~~~~~~~~---------~ 173 (331)
T 3u4y_A 115 FLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSS------------ANTVRRFKIDADGVLFDTGQEFI---------S 173 (331)
T ss_dssp TTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETT------------TTEEEEEEECTTCCEEEEEEEEE---------C
T ss_pred CCCCCeEEEEECCCCccceEECCCCCEEEEEecCC------------CceEEEEEECCCCcEeecCCccc---------c
Confidence 8 6754443 3335567899999999988776432 25 888888732 2211100000 0
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc---eEEeecccccCceeeccCCceEEEE
Q 002194 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVYE 473 (954)
Q Consensus 397 ~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~---~~l~~~~~~~~~~~~spDg~~l~~~ 473 (954)
...++..++|+|||+.+++. . ...+.|++|++ .+++. .........+..++|+|||++|+++
T Consensus 174 ~~~~~~~~~~spdg~~l~v~-~-----------~~~~~v~v~d~---~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 238 (331)
T 3u4y_A 174 GGTRPFNITFTPDGNFAFVA-N-----------LIGNSIGILET---QNPENITLLNAVGTNNLPGTIVVSRDGSTVYVL 238 (331)
T ss_dssp SSSSEEEEEECTTSSEEEEE-E-----------TTTTEEEEEEC---SSTTSCEEEEEEECSSCCCCEEECTTSSEEEEE
T ss_pred CCCCccceEECCCCCEEEEE-e-----------CCCCeEEEEEC---CCCcccceeeeccCCCCCceEEECCCCCEEEEE
Confidence 01234678999999976654 1 12457899996 44443 2223344556789999999988876
Q ss_pred EeccccceEEEEEcCCCCCCCcEEEe--cCC----CCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCC
Q 002194 474 SWYKTRRTRTWVISPGSKDVAPRILF--DRS----SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATP 547 (954)
Q Consensus 474 ~~~~~~~~~l~~~d~~~~~~~~~~l~--~~~----~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~ 547 (954)
...+ ..|+++|+.++ +...+. ... ..... ....+.|+|||++|++...
T Consensus 239 ~~~~---~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~v~~~------------------ 292 (331)
T 3u4y_A 239 TEST---VDVFNFNQLSG--TLSFVKSFGHGLLIDPRPLF---GANQMALNKTETKLFISAN------------------ 292 (331)
T ss_dssp CSSE---EEEEEEETTTT--EEEEEEEEECCCCCCCGGGT---TCCCEEECTTSSEEEEEET------------------
T ss_pred EcCC---CEEEEEECCCC--ceeeecccccccccCCCCcc---cccceEECCCCCEEEEecC------------------
Confidence 5432 45889998875 221121 111 00001 0112689999999887762
Q ss_pred CCCCCeEEEEECCCCCeEEE
Q 002194 548 EGNIPFLDLFDINTGSKERI 567 (954)
Q Consensus 548 ~~~~~~l~~~d~~~g~~~~l 567 (954)
+...|.+||+++.....+
T Consensus 293 --~~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 293 --ISRELKVFTISGKVVGYV 310 (331)
T ss_dssp --TTTEEEEEETTSCEEEEC
T ss_pred --CCCcEEEEEecCCcccce
Confidence 123599999987665444
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.1e-15 Score=162.30 Aligned_cols=283 Identities=10% Similarity=-0.016 Sum_probs=175.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCce-eeeecCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE-IEIQGFPDG 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~-~~lt~~~~~ 188 (954)
.+..++|||||++|++.... .... .....|++|+..+ ++. +.+. .+
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~---------------------~~~~-----~~~~~v~~~d~~~----~~~~~~~~---~~ 88 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQ---------------------SRKL-----DKGGVVYRLDPVT----LEVTQAIH---ND 88 (353)
T ss_dssp SEEEEEEETTTTEEEEEECC---------------------CTTT-----EESEEEEEECTTT----CCEEEEEE---ES
T ss_pred CccceEECCCCCEEEEEcCC---------------------CcCC-----CCCccEEEEcCCC----CeEEEEEe---cC
Confidence 34578999999999776642 0000 0014789988753 332 2232 22
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc-----cccccceeEecCCeEEEEEec
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-----NAIFDNFVWVNNSTLLVCTIP 263 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~-----~~~~~~~~wspDG~~l~~~~~ 263 (954)
.....+.|+|||++|+++.. ....|+++|+++++.......+.... ......+.|+|||+.++++..
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~--------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 160 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNT--------VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI 160 (353)
T ss_dssp SCCCSEEEETTTTEEEEEET--------TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE
T ss_pred CCcceEEECCCCCEEEEEec--------CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEec
Confidence 35678999999998887642 24589999999888754443322100 001346899999999887610
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCC-C-ccccccccC
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-P-AVYTSLDPS 340 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~-~-~~~~~~~~S 340 (954)
. ....|+++|+ +++...... . .....++||
T Consensus 161 ---------------------~--------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 161 ---------------------G--------------------------KESVIWVVDGGNIKLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp ---------------------S--------------------------SSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred ---------------------C--------------------------CCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence 0 1245889998 776544433 3 457789999
Q ss_pred CCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002194 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (954)
Q Consensus 341 pDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~ 420 (954)
|||++|++... .+.+++||+.+++.......... +.......++|+|||+.+++. .
T Consensus 194 ~dg~~l~~~~~-------------~~~i~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~-~-- 249 (353)
T 3vgz_A 194 SEGKRLYTTNA-------------DGELITIDTADNKILSRKKLLDD--------GKEHFFINISLDTARQRAFIT-D-- 249 (353)
T ss_dssp TTTTEEEEECT-------------TSEEEEEETTTTEEEEEEECCCS--------SSCCCEEEEEEETTTTEEEEE-E--
T ss_pred CCCCEEEEEcC-------------CCeEEEEECCCCeEEEEEEcCCC--------CCCcccceEEECCCCCEEEEE-e--
Confidence 99999888763 23789999987665433221110 001223468999999976544 1
Q ss_pred cCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEec
Q 002194 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD 500 (954)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~ 500 (954)
...+.|++++. .+++......... ...++|+|||++|+++...+ ..|+++|+.++ +......
T Consensus 250 ---------~~~~~v~~~d~---~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~---~~v~~~d~~~~--~~~~~~~ 311 (353)
T 3vgz_A 250 ---------SKAAEVLVVDT---RNGNILAKVAAPE-SLAVLFNPARNEAYVTHRQA---GKVSVIDAKSY--KVVKTFD 311 (353)
T ss_dssp ---------SSSSEEEEEET---TTCCEEEEEECSS-CCCEEEETTTTEEEEEETTT---TEEEEEETTTT--EEEEEEE
T ss_pred ---------CCCCEEEEEEC---CCCcEEEEEEcCC-CceEEECCCCCEEEEEECCC---CeEEEEECCCC--eEEEEEe
Confidence 12458999996 4444433322222 35699999999887775443 46888998875 2222222
Q ss_pred CCCCCccCCCCCCCeeeccCCcEEEEEEe
Q 002194 501 RSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 501 ~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (954)
... .... ++|+|||++|+....
T Consensus 312 ~~~-~~~~------~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 312 TPT-HPNS------LALSADGKTLYVSVK 333 (353)
T ss_dssp CCS-EEEE------EEECTTSCEEEEEEE
T ss_pred cCC-CCCe------EEEcCCCCEEEEEEc
Confidence 211 1122 789999998887764
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=184.97 Aligned_cols=248 Identities=13% Similarity=0.136 Sum_probs=160.1
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccc------cCC--CCCCCCcccHHHHHH
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQV------RGS--PNEFPRIGSTSVLLW 708 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~l 708 (954)
+..+.+.++..||.+|.+.+|+|++ .+++|+||+.||...........+ .+. ...+..+....++.|
T Consensus 39 ~~~~~v~i~~~DG~~L~a~l~~P~~-----~~~~P~vl~~~pyg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l 113 (560)
T 3iii_A 39 IMEKDGTVEMRDGEKLYINIFRPNK-----DGKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSFTPEESPDPGFW 113 (560)
T ss_dssp EEEEEEEEECTTSCEEEEEEEECSS-----SSCEEEEEEEESSCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCCHHHH
T ss_pred EEEEEEEEECCCCcEEEEEEEecCC-----CCCCCEEEEecCCCCCcccccccccccccccccccccccccccCCCHHHH
Confidence 4467899999999999999999975 246999999987432210000000 000 000110101136789
Q ss_pred HHCCcEEEEcCCCCCCCCCCcccc-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEE
Q 002194 709 LARGFAILGGPTTPIIGEGDEEAN-DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (954)
Q Consensus 709 a~~G~~V~~~~~~~~~G~G~~~~~-~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (954)
+++||+|+..+. +|+|.+.+. ..+.....+|+.++++||.+++.+| .||+++|+||||++++.+|+..|+.++|+
T Consensus 114 a~~Gy~vv~~D~---RG~G~S~G~~~~~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p~~l~ai 189 (560)
T 3iii_A 114 VPNDYVVVKVAL---RGSDKSKGVLSPWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKAM 189 (560)
T ss_dssp GGGTCEEEEEEC---TTSTTCCSCBCTTSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCCTTEEEE
T ss_pred HhCCCEEEEEcC---CCCCCCCCccccCChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCCCceEEE
Confidence 999999999555 455555432 2334578999999999999998877 89999999999999999999999999999
Q ss_pred EEeccCCCCCC---CCCCCcccc-chhh----------------------h--cH-HHHHhcCcccccCCCCCCEEEEEe
Q 002194 788 IARSGAYNRTL---TPFGFQNED-RTLW----------------------E--AT-STYVEMSPFMSANKLKKPILLVHG 838 (954)
Q Consensus 788 v~~~~~~~~~~---~~~~~~~~~-~~~~----------------------~--~~-~~~~~~sp~~~~~~~~~P~Lii~G 838 (954)
|+.+|+.|... ..-+..... ...| + .. +.|...++ .+++|++|+|+++|
T Consensus 190 v~~~~~~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~~d~~W~~~~~--~~~~I~vPvl~v~G 267 (560)
T 3iii_A 190 IPWEGLNDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFDDFWKQRQV--PLSQIKTPLLTCAS 267 (560)
T ss_dssp EEESCCCBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCSSCHHHHTTBC--CGGGCCSCEEEEEE
T ss_pred EecCCcccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCCcchHhhccCC--chhhCCCCEEEeCC
Confidence 99999877321 000000000 0001 0 00 12222233 57889999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcccCC
Q 002194 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
-.|..+. ...+.+.|++++..+ +.+.+.++ +|+.. .......+.+++||++||+...
T Consensus 268 w~D~~~~--~~g~l~~y~~l~~~~--k~l~ih~~-~~~~~--~~~~~~~~~~~~wfD~~LkG~~ 324 (560)
T 3iii_A 268 WSTQGLH--NRGSFEGFKQAASEE--KWLYVHGR-KEWES--YYARENLERQKSFFDFYLKEEN 324 (560)
T ss_dssp GGGTTTT--HHHHHHHHHHCCCSS--EEEEEESS-CHHHH--HHSHHHHHHHHHHHHHHTSCCC
T ss_pred cCCCccc--chhHHHHHHhccccC--cEEEECCC-CCcCc--ccChhHHHHHHHHHHHHhCCCC
Confidence 9997554 677778888776443 34544332 23210 0012456788999999998654
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=162.59 Aligned_cols=218 Identities=10% Similarity=0.144 Sum_probs=140.2
Q ss_pred EEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC
Q 002194 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (954)
+...+|..+ .+|.|++ ++.|+||++|||.|..++. ..+ .......+++.||.|+.++|+..
T Consensus 9 ~~~~~~~~~--~~y~p~~------~~~p~iv~~HGGg~~~g~~--------~~~---~~~~~~~l~~~g~~Vi~vdYrla 69 (274)
T 2qru_A 9 QTLANGATV--TIYPTTT------EPTNYVVYLHGGGMIYGTK--------SDL---PEELKELFTSNGYTVLALDYLLA 69 (274)
T ss_dssp EECTTSCEE--EEECCSS------SSCEEEEEECCSTTTSCCG--------GGC---CHHHHHHHHTTTEEEEEECCCCT
T ss_pred ccccCCeeE--EEEcCCC------CCCcEEEEEeCccccCCCh--------hhc---hHHHHHHHHHCCCEEEEeCCCCC
Confidence 344466544 6787753 2479999999986543321 111 12344556778999999777632
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHH---hCCCcccEEEEeccCCCCCCCC
Q 002194 724 IGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA---HAPHLFCCGIARSGAYNRTLTP 800 (954)
Q Consensus 724 ~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~---~~p~~~~a~v~~~~~~~~~~~~ 800 (954)
+...++..++|+.++++|+.++.. ++++|+|+|+|+||++|+.++. ..+.+++++|+++|..+.....
T Consensus 70 --------Pe~~~p~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~~~~~~ 140 (274)
T 2qru_A 70 --------PNTKIDHILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDLEFIK 140 (274)
T ss_dssp --------TTSCHHHHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSCSGGGG
T ss_pred --------CCCCCcHHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEcccccccccC
Confidence 223567889999999999998743 2689999999999999999987 3467789999888876521100
Q ss_pred C----CCc---c---------c--cchhhhc-H------------HHHHhc--------Cccc--ccCCCCCCEEEEEeC
Q 002194 801 F----GFQ---N---------E--DRTLWEA-T------------STYVEM--------SPFM--SANKLKKPILLVHGE 839 (954)
Q Consensus 801 ~----~~~---~---------~--~~~~~~~-~------------~~~~~~--------sp~~--~~~~~~~P~Lii~G~ 839 (954)
. .+. . . ....+.. . ..+... .++. .+.++ .|+||++|+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-pP~li~~G~ 219 (274)
T 2qru_A 141 EPRKLLKQAISAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGDWSAYALSDETLKTF-PPCFSTASS 219 (274)
T ss_dssp SCCCSCSSCCCSGGGTTSCCSSCCSCCTTCTTHHHHHHHHHTTCHHHHHTCCTTSCCGGGCCCHHHHHTS-CCEEEEEET
T ss_pred CchhhccccccHHHHhhhcccCCCCCCccccchhhhhhhhhhcchhhccCcccccccccCCCChhhhcCC-CCEEEEEec
Confidence 0 000 0 0 0000000 0 001000 0010 12345 799999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCc---ccHHHHHHHHHHHHHH
Q 002194 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR---ESIMHVLWETDRWLQK 896 (954)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~---~~~~~~~~~i~~fl~~ 896 (954)
.|..++ ..+++++.+++. +++++++++++|++... ....++.+.+.+||++
T Consensus 220 ~D~~~~--~~~~~~l~~~~~----~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~fl~~ 273 (274)
T 2qru_A 220 SDEEVP--FRYSKKIGRTIP----ESTFKAVYYLEHDFLKQTKDPSVITLFEQLDSWLKE 273 (274)
T ss_dssp TCSSSC--THHHHHHHHHST----TCEEEEECSCCSCGGGGTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCcC--HHHHHHHHHhCC----CcEEEEcCCCCcCCccCcCCHHHHHHHHHHHHHHhh
Confidence 999988 788877776553 46999999999998422 2234667888888875
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=178.54 Aligned_cols=222 Identities=12% Similarity=0.100 Sum_probs=138.0
Q ss_pred cCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCC----CCCCCCcccHHHHHHH
Q 002194 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGS----PNEFPRIGSTSVLLWL 709 (954)
Q Consensus 634 ~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~----~~~~~~~~~~~~~~la 709 (954)
...+..+.+++++.+|.++++++++|++. +++.|+||++||+........+ ..+. ...|.......++.|+
T Consensus 87 ~~g~~~e~v~~~~~~g~~l~~~l~~P~~~----~~~~P~Vv~~HG~g~~~~~~~~-~~g~~~~~~~~y~~~~~~~a~~la 161 (398)
T 3nuz_A 87 REGYRLEKWEFYPLPKCVSTFLVLIPDNI----NKPVPAILCIPGSGGNKEGLAG-EPGIAPKLNDRYKDPKLTQALNFV 161 (398)
T ss_dssp CSSEEEEEEEECCSTTBCEEEEEEEESSC----CSCEEEEEEECCTTCCHHHHHT-CCCSSSTTCCSTTCTTTCHHHHHH
T ss_pred cCCEEEEEEEEEcCCCcEEEEEEEeCCCC----CCCccEEEEEcCCCCCcccccc-cccccccccccccchHHHHHHHHH
Confidence 34456788999999999999999999863 3469999999997432110000 0000 0011100013678899
Q ss_pred HCCcEEEEcCCCCCCCCCCccc----------------------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeC
Q 002194 710 ARGFAILGGPTTPIIGEGDEEA----------------------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHS 767 (954)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~----------------------~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S 767 (954)
++||+|++++++ |+|.+.. ...+....+.|+.++++||.+++.+|++||+|+|||
T Consensus 162 ~~Gy~Vl~~D~r---G~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S 238 (398)
T 3nuz_A 162 KEGYIAVAVDNP---AAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFS 238 (398)
T ss_dssp TTTCEEEEECCT---TSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEG
T ss_pred HCCCEEEEecCC---CCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEC
Confidence 999999996554 4444421 112334456899999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCcccEEEEeccCCCCCC-----CC---C---CCccccchhhhcHHHHHhcCcccccCC-CCCCEEE
Q 002194 768 YGAFMTANLLAHAPHLFCCGIARSGAYNRTL-----TP---F---GFQNEDRTLWEATSTYVEMSPFMSANK-LKKPILL 835 (954)
Q Consensus 768 ~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~-----~~---~---~~~~~~~~~~~~~~~~~~~sp~~~~~~-~~~P~Li 835 (954)
|||++|+.+++.. ++++|+|+.+++..... .. . .+....... .+..+...+....+.. ...|+||
T Consensus 239 ~GG~~a~~~aa~~-~~i~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~d~~~~~~~~ap~PlLi 315 (398)
T 3nuz_A 239 LGTEPMMVLGTLD-TSIYAFVYNDFLCQTQERAEVMTMPDKNGRRPFPNSIRHL--IPDFWKNFNFPDIVAALAPRPIIL 315 (398)
T ss_dssp GGHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHCCCCCTTSCCCCSSCGGGC--CTTHHHHCCHHHHHHHTTTSCEEE
T ss_pred HhHHHHHHHHhcC-CcEEEEEEecccccchhhhhhhccccccccccCCccHHHh--cchHhhhCCHHHHHHhhCCCcEEE
Confidence 9999999998887 57899988765433100 00 0 000000000 0001111121111111 2469999
Q ss_pred EEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC
Q 002194 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP 871 (954)
Q Consensus 836 i~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~ 871 (954)
+||+.|.. ..+.+++++++.. ..++++++||
T Consensus 316 i~G~~D~~----v~~~~~~y~~~g~-~~~~~~~~~p 346 (398)
T 3nuz_A 316 TEGGLDRD----LDLVRKAYAIVGT-PDNVKIYHYK 346 (398)
T ss_dssp CSCBCHHH----HHHHHHHHHHHTC-TTSEEECCCG
T ss_pred eeCCchHH----HHHHHHHHHHcCC-CcceEEEEeC
Confidence 99999954 5667777776643 2567887777
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-15 Score=163.16 Aligned_cols=229 Identities=11% Similarity=0.082 Sum_probs=143.2
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEc
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (954)
.+...+...+|.+++++.+.|++-.+ .+.|+||++||..... ..| ...+..|+++||.|++
T Consensus 7 ~~~~~i~~~dG~~l~~~~~~p~~~~~---~~~~~VvllHG~g~~~-----------~~~----~~~~~~L~~~G~~Vi~- 67 (305)
T 1tht_A 7 TIAHVLRVNNGQELHVWETPPKENVP---FKNNTILIASGFARRM-----------DHF----AGLAEYLSTNGFHVFR- 67 (305)
T ss_dssp CEEEEEEETTTEEEEEEEECCCTTSC---CCSCEEEEECTTCGGG-----------GGG----HHHHHHHHTTTCCEEE-
T ss_pred ceEEEEEcCCCCEEEEEEecCcccCC---CCCCEEEEecCCccCc-----------hHH----HHHHHHHHHCCCEEEE-
Confidence 35566788899999999988753111 1358899999953110 011 2456678889999999
Q ss_pred CCCCCCCC-CCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 719 PTTPIIGE-GDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 719 ~~~~~~G~-G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
+|.+|+ |.+... ........+|+.++++++.+.+ .++++++||||||.+|+.++.+ | +++++|+.++..+
T Consensus 68 --~D~rGh~G~S~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~~~~ 140 (305)
T 1tht_A 68 --YDSLHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD-L-ELSFLITAVGVVN 140 (305)
T ss_dssp --ECCCBCC--------CCCHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESCCSC
T ss_pred --eeCCCCCCCCCCcccceehHHHHHHHHHHHHHHHhCC---CCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecCchh
Confidence 566676 766442 1224566789999999997543 4689999999999999999988 6 7999998877533
Q ss_pred CCC-----CCCCC---c----ccc-chh-h-hcHHHH----Hhc------CcccccCCCCCCEEEEEeCCCCCCCCchHH
Q 002194 796 RTL-----TPFGF---Q----NED-RTL-W-EATSTY----VEM------SPFMSANKLKKPILLVHGEEDNNSGTLTMQ 850 (954)
Q Consensus 796 ~~~-----~~~~~---~----~~~-~~~-~-~~~~~~----~~~------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~ 850 (954)
... ....+ . ... ... . .....+ ... +....+.++++|+|++||++|..+| +..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~vp--~~~ 218 (305)
T 1tht_A 141 LRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVK--QEE 218 (305)
T ss_dssp HHHHHHHHHSSCGGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSC--HHH
T ss_pred HHHHHHHHhhhhhhhcchhhCcccccccccccCHHHHHHHHHhccccchhhHHHHHhhcCCCEEEEEeCCCCccC--HHH
Confidence 100 00000 0 000 000 0 000111 111 1234567899999999999999998 888
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCcCCCcc-cHHHHHHHHHHHHHHh
Q 002194 851 SDRFFNALKGHGALCRLVILPFESHGYAARE-SIMHVLWETDRWLQKY 897 (954)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~-~~~~~~~~i~~fl~~~ 897 (954)
++++++.+.. .+++++++|++||.+.... ....+++.+.+|....
T Consensus 219 ~~~l~~~i~~--~~~~l~~i~~agH~~~e~p~~~~~fl~~~~~~~~~~ 264 (305)
T 1tht_A 219 VYDMLAHIRT--GHCKLYSLLGSSHDLGENLVVLRNFYQSVTKAAIAM 264 (305)
T ss_dssp HHHHHTTCTT--CCEEEEEETTCCSCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CCcEEEEeCCCCCchhhCchHHHHHHHHHHHHHHHh
Confidence 8877765432 3479999999999974211 1223445555555444
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=172.95 Aligned_cols=306 Identities=9% Similarity=0.105 Sum_probs=176.9
Q ss_pred hcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCce-eeeec
Q 002194 106 VDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE-IEIQG 184 (954)
Q Consensus 106 ~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~-~~lt~ 184 (954)
...+.+..++|||||+.++++... .+......+.++.|++|++.. +.. +.+..
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~----------------------~g~~~~~~~~d~~v~iw~~~~----~~~~~~~~~ 63 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTV----------------------SGTVDANFSTDSSLELWSLLA----ADSEKPIAS 63 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCB----------------------SSCCCSSCCCCCCCEEEESSS----GGGCSCSCC
T ss_pred hhhhhcceEeeCCCCCCEEEEEec----------------------CcccccccCCCCeEEEEEccC----CCCCcEEEE
Confidence 344467889999999944444421 000000011124789999854 221 12222
Q ss_pred CCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC----C-ceeecccCCCccccccccceeEecC-CeEE
Q 002194 185 FPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT----G-KARPLFQSPDIYLNAIFDNFVWVNN-STLL 258 (954)
Q Consensus 185 ~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~----g-~~~~lt~~~~~~~~~~~~~~~wspD-G~~l 258 (954)
+.....+..+.|||||+.|+.... ...|.++++.+ . ....+..+.. .+..+.|+|| +++|
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~---------dg~v~vw~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l 129 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALD---------NGSLELYSTNEANNAINSMARFSNHSS-----SVKTVKFNAKQDNVL 129 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEES---------SSCEEEECCSSTTSCCCEEEECCCSSS-----CCCEEEECSSSTTBE
T ss_pred EecCCceEEEEECCCCCeEEEEcc---------CCeEEEeecccccccccchhhccCCcc-----ceEEEEEcCCCCCEE
Confidence 333347889999999999988652 34566666665 2 2233332222 2778999999 7777
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-------eeEc--
Q 002194 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-------VKEI-- 328 (954)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-------~~~l-- 328 (954)
+... ....|.++++ +++ ...+
T Consensus 130 ~s~~-------------------------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~ 160 (416)
T 2pm9_A 130 ASGG-------------------------------------------------NNGEIFIWDMNKCTESPSNYTPLTPGQ 160 (416)
T ss_dssp EEEC-------------------------------------------------SSSCEEBCBTTTTSSCTTTCCCBCCCC
T ss_pred EEEc-------------------------------------------------CCCeEEEEECCCCcccccccccccccc
Confidence 7651 1123556666 443 1111
Q ss_pred -CCC-ccccccccCCCC-cEEEEEeecCCcccccccCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccce
Q 002194 329 -GPP-AVYTSLDPSPDE-KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSI 404 (954)
Q Consensus 329 -~~~-~~~~~~~~SpDG-k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~ 404 (954)
... ..+..++|+||| +.|+..+. ++.+.+||++.++.. .+...... .+....+..+
T Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~iwd~~~~~~~~~~~~~~~~-------~~~~~~v~~~ 220 (416)
T 2pm9_A 161 SMSSVDEVISLAWNQSLAHVFASAGS-------------SNFASIWDLKAKKEVIHLSYTSPN-------SGIKQQLSVV 220 (416)
T ss_dssp SCCSSCCCCEEEECSSCTTEEEEESS-------------SSCEEEEETTTTEEEEEECCCCCS-------SCCCCCEEEE
T ss_pred ccCCCCCeeEEEeCCCCCcEEEEEcC-------------CCCEEEEECCCCCcceEEeccccc-------cccCCceEEE
Confidence 122 667889999994 55555542 238999999876543 33321100 0112345779
Q ss_pred eeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCC-ceEEe-ecccccCceeecc-CCceEEEEEeccccce
Q 002194 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILH-KLDLRYGGISWCD-DSLALVYESWYKTRRT 481 (954)
Q Consensus 405 ~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~-~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~ 481 (954)
+|+|||+.+++..... .....|.+|++ ..+.. ...+. .+...+..++|+| |++.|+....++
T Consensus 221 ~~~~~~~~~l~~~~~d---------~~~~~i~~~d~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg---- 285 (416)
T 2pm9_A 221 EWHPKNSTRVATATGS---------DNDPSILIWDL--RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN---- 285 (416)
T ss_dssp EECSSCTTEEEEEECC---------SSSCCCCEEET--TSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS----
T ss_pred EECCCCCCEEEEEECC---------CCCceEEEEeC--CCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCC----
Confidence 9999997665552110 01127888886 23223 34444 5667788899999 888888776443
Q ss_pred EEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCC-cEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECC
Q 002194 482 RTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTG-TYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN 560 (954)
Q Consensus 482 ~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 560 (954)
.|.++++.++ +.......+...+.. +.|+||| +.++... ....|.+||+.
T Consensus 286 ~v~~wd~~~~--~~~~~~~~~~~~v~~------~~~s~~~~~~l~s~~---------------------~d~~i~iw~~~ 336 (416)
T 2pm9_A 286 TVLLWNPESA--EQLSQFPARGNWCFK------TKFAPEAPDLFACAS---------------------FDNKIEVQTLQ 336 (416)
T ss_dssp EEEEECSSSC--CEEEEEECSSSCCCC------EEECTTCTTEEEECC---------------------SSSEEEEEESC
T ss_pred CEEEeeCCCC--ccceeecCCCCceEE------EEECCCCCCEEEEEe---------------------cCCcEEEEEcc
Confidence 4666777764 333333333333333 8999999 5665544 12348888887
Q ss_pred CCCe
Q 002194 561 TGSK 564 (954)
Q Consensus 561 ~g~~ 564 (954)
+++.
T Consensus 337 ~~~~ 340 (416)
T 2pm9_A 337 NLTN 340 (416)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-14 Score=164.18 Aligned_cols=306 Identities=11% Similarity=0.025 Sum_probs=185.4
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCC-ccccccccceeEecCCeEEEEEecCCC
Q 002194 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD-IYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~-~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
+..+..++|+| ++.++++.. ....|+++|+++++..+...... ......+..++|+|||+.++...
T Consensus 122 ~~~~~~~~~s~-~~~~~~~~~--------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~---- 188 (433)
T 3bws_A 122 GFQPKSVRFID-NTRLAIPLL--------EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQM---- 188 (433)
T ss_dssp SSCBCCCEESS-SSEEEEEBT--------TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEG----
T ss_pred CCCceEEEEeC-CCeEEEEeC--------CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEEC----
Confidence 34566899999 556766542 23468999999888766433211 00111256789999998777550
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-ccccccccCCCC
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDE 343 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~-~~~~~~~~SpDG 343 (954)
....|+++++ +++. ..+... ..+..++|+|||
T Consensus 189 ---------------------------------------------~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (433)
T 3bws_A 189 ---------------------------------------------QANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIR 223 (433)
T ss_dssp ---------------------------------------------GGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTT
T ss_pred ---------------------------------------------CCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCC
Confidence 2245788888 6643 334333 567789999999
Q ss_pred cEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 344 k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
++++++... .+.|++||+++++........ ..+..++|+|||+.+++.......
T Consensus 224 ~~l~~~~~~------------~~~i~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~~g~~l~~~~~~~~~- 277 (433)
T 3bws_A 224 DLVYCSNWI------------SEDISVIDRKTKLEIRKTDKI-------------GLPRGLLLSKDGKELYIAQFSASN- 277 (433)
T ss_dssp TEEEEEETT------------TTEEEEEETTTTEEEEECCCC-------------SEEEEEEECTTSSEEEEEEEESCT-
T ss_pred CEEEEEecC------------CCcEEEEECCCCcEEEEecCC-------------CCceEEEEcCCCCEEEEEECCCCc-
Confidence 999877632 238999999866543322211 234678999999977665221110
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCC
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 503 (954)
. ....+.|++|++ .+++..........+..++|+|||+.|++....+ ..|++++++++ +....... .
T Consensus 278 -~---~~~dg~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~---~~v~v~d~~~~--~~~~~~~~-~ 344 (433)
T 3bws_A 278 -Q---ESGGGRLGIYSM---DKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCC---SKIEVYDLKEK--KVQKSIPV-F 344 (433)
T ss_dssp -T---CSCCEEEEEEET---TTTEEEEEEEEEECEEEEEECSSTTEEEEEETTT---TEEEEEETTTT--EEEEEEEC-S
T ss_pred -c---ccCCCeEEEEEC---CCCcEEeeccCCCCcceEEECCCCCEEEEEecCC---CEEEEEECCCC--cEEEEecC-C
Confidence 0 013558999996 4444444444444667899999999988876554 35777888764 22222221 1
Q ss_pred CCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEec
Q 002194 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583 (954)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~ 583 (954)
..+.. +.|+|||++++......+......+.. .+....|++||+++++.......... +.
T Consensus 345 ~~~~~------~~~s~dg~~l~~~~~~~~~~~~~~~~~------g~~dg~v~~~d~~~~~~~~~~~~~~~-----~~--- 404 (433)
T 3bws_A 345 DKPNT------IALSPDGKYLYVSCRGPNHPTEGYLKK------GLVLGKVYVIDTTTDTVKEFWEAGNQ-----PT--- 404 (433)
T ss_dssp SSEEE------EEECTTSSEEEEEECCCCCTTTCTTSC------CSSCCEEEEEETTTTEEEEEEECSSS-----EE---
T ss_pred CCCCe------EEEcCCCCEEEEEecCCCccccccccc------cccceEEEEEECCCCcEEEEecCCCC-----Cc---
Confidence 22222 789999998888763211000000000 01134699999999887766554321 11
Q ss_pred cCCccccccccCCEEEEEEecCCCCceEEEEECC
Q 002194 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWP 617 (954)
Q Consensus 584 ~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~ 617 (954)
..+|+|||+.+++.... ...++++++.
T Consensus 405 ----~~~~s~dg~~l~~~~~~---d~~i~v~~~~ 431 (433)
T 3bws_A 405 ----GLDVSPDNRYLVISDFL---DHQIRVYRRD 431 (433)
T ss_dssp ----EEEECTTSCEEEEEETT---TTEEEEEEET
T ss_pred ----eEEEcCCCCEEEEEECC---CCeEEEEEec
Confidence 25689999888765432 2467777753
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-14 Score=160.57 Aligned_cols=263 Identities=10% Similarity=0.073 Sum_probs=170.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++|+..+.+ +.|.+|++.. + .....+.. ...
T Consensus 57 ~v~~~~~s~d~~~l~s~s~D---------------------------------g~v~iWd~~~-~--~~~~~~~~--~~~ 98 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQD---------------------------------GKLIIWDSYT-T--NKVHAIPL--RSS 98 (340)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------TEEEEEETTT-C--CEEEEEEC--SSS
T ss_pred ceEEEEECCCCCEEEEEeCC---------------------------------CcEEEEECCC-C--CcceEeec--CCc
Confidence 46678999999999998876 5799999854 2 22233332 223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce-----eecccCCCccccccccceeEecCCeEEEEEecC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-----RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (954)
.+....|+|||+.|+.... ...+.++++.+++. +.+..+.. .+..+.|+++++++...
T Consensus 99 ~v~~~~~s~~~~~l~s~~~---------d~~v~iw~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~l~s~s--- 161 (340)
T 1got_B 99 WVMTCAYAPSGNYVACGGL---------DNICSIYNLKTREGNVRVSRELAGHTG-----YLSCCRFLDDNQIVTSS--- 161 (340)
T ss_dssp CEEEEEECTTSSEEEEEET---------TCEEEEEETTTCSBSCEEEEEEECCSS-----CEEEEEEEETTEEEEEE---
T ss_pred cEEEEEECCCCCEEEEEeC---------CCeEEEEECccCCCcceeEEEecCCCc-----cEEEEEECCCCcEEEEE---
Confidence 6788999999999887542 45667777765431 11222222 26678899999844332
Q ss_pred CCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-ccccccccCC
Q 002194 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSP 341 (954)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~-~~~~~~~~Sp 341 (954)
....|.++|+ +++. ..+... +.+..++|+|
T Consensus 162 -----------------------------------------------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~ 194 (340)
T 1got_B 162 -----------------------------------------------GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194 (340)
T ss_dssp -----------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred -----------------------------------------------CCCcEEEEECCCCcEEEEEcCCCCceEEEEECC
Confidence 2234777788 6653 344444 7788999999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~ 420 (954)
||+.|+..+.+ +.+.+||+..+. ...+..+ ...+..++|+|||+.++..
T Consensus 195 ~~~~l~sg~~d-------------~~v~~wd~~~~~~~~~~~~h-------------~~~v~~v~~~p~~~~l~s~---- 244 (340)
T 1got_B 195 DTRLFVSGACD-------------ASAKLWDVREGMCRQTFTGH-------------ESDINAICFFPNGNAFATG---- 244 (340)
T ss_dssp TSSEEEEEETT-------------SCEEEEETTTCSEEEEECCC-------------SSCEEEEEECTTSSEEEEE----
T ss_pred CCCEEEEEeCC-------------CcEEEEECCCCeeEEEEcCC-------------cCCEEEEEEcCCCCEEEEE----
Confidence 99998887743 389999998554 3333322 1345689999999876554
Q ss_pred cCCCccccccCCCeEEEEecCCCCCCCceEEeecc---cccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEE
Q 002194 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD---LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (954)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~---~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 497 (954)
+..+.|.+|++ ..++........ ..+..++|+|||+.|+....+. .|.++|..++ ....
T Consensus 245 ---------s~d~~v~iwd~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~----~i~vwd~~~~--~~~~ 306 (340)
T 1got_B 245 ---------SDDATCRLFDL---RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF----NCNVWDALKA--DRAG 306 (340)
T ss_dssp ---------ETTSCEEEEET---TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS----EEEEEETTTC--CEEE
T ss_pred ---------cCCCcEEEEEC---CCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCC----eEEEEEcccC--cEee
Confidence 34557889996 333322222222 2456789999999988876543 3555666554 3333
Q ss_pred EecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 498 LFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 498 l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
....+...+.. +.|+|||++|+...
T Consensus 307 ~~~~h~~~v~~------~~~s~dg~~l~s~s 331 (340)
T 1got_B 307 VLAGHDNRVSC------LGVTDDGMAVATGS 331 (340)
T ss_dssp EEECCSSCEEE------EEECTTSSCEEEEE
T ss_pred EeecCCCcEEE------EEEcCCCCEEEEEc
Confidence 33444444443 78999999988776
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-16 Score=175.03 Aligned_cols=153 Identities=8% Similarity=0.047 Sum_probs=106.7
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCC---CCCCCCcccHHHHHHHHC
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGS---PNEFPRIGSTSVLLWLAR 711 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~---~~~~~~~~~~~~~~la~~ 711 (954)
..+..+.+++++.+|..+++++++|++. +++.|+||++||+........+..... ...+......++..|+++
T Consensus 83 ~g~~~e~v~~~~~~g~~l~~~l~~P~~~----~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~ 158 (391)
T 3g8y_A 83 EGYILEKWEFYPFPKSVSTFLVLKPEHL----KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKE 158 (391)
T ss_dssp TTEEEEEEEECCSTTCCEEEEEEEETTC----CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTT
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEeCCCC----CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHC
Confidence 4466788999999999999999999763 345899999999643211000000000 000110011467889999
Q ss_pred CcEEEEcCCCCCCCCCCcccch----------------------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChH
Q 002194 712 GFAILGGPTTPIIGEGDEEAND----------------------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYG 769 (954)
Q Consensus 712 G~~V~~~~~~~~~G~G~~~~~~----------------------~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~G 769 (954)
||+|+++++ +|+|.+.... .+....+.|+.+++++|.+++.+|++||+|+|+|||
T Consensus 159 G~~Vl~~D~---rg~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~G 235 (391)
T 3g8y_A 159 GYVAVAVDN---AAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLG 235 (391)
T ss_dssp TCEEEECCC---TTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGG
T ss_pred CCEEEEecC---CCccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChh
Confidence 999999554 4555543210 112233589999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 770 AFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 770 G~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
|++|+.+++.. ++++++|+.+++..
T Consensus 236 G~~al~~a~~~-~~i~a~v~~~~~~~ 260 (391)
T 3g8y_A 236 TEPMMVLGVLD-KDIYAFVYNDFLCQ 260 (391)
T ss_dssp HHHHHHHHHHC-TTCCEEEEESCBCC
T ss_pred HHHHHHHHHcC-CceeEEEEccCCCC
Confidence 99999998887 67999998877654
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.4e-16 Score=168.02 Aligned_cols=127 Identities=16% Similarity=0.145 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCc
Q 002194 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSP 822 (954)
Q Consensus 743 ~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 822 (954)
+.+++..+.+.. .++.++|||+||.+++.++.++|++++++|+++|... ..+
T Consensus 186 ~~~~l~~l~~~~----~~~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~------------------------~~~ 237 (328)
T 1qlw_A 186 TVANLSKLAIKL----DGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGEC------------------------PKP 237 (328)
T ss_dssp HHHHHHHHHHHH----TSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCC------------------------CCG
T ss_pred HHHHHHHHHHHh----CCceEEEECcccHHHHHHHHhChhheeEEEEeCCCCC------------------------CCH
Confidence 344444554432 2899999999999999999999999999999987531 011
Q ss_pred ccccCCCCCCEEEEEeCCCCCCCCch-----HHHHHHHHHHHhCCCcEEEEEeCCCC-----CcCCCcccHHHHHHHHHH
Q 002194 823 FMSANKLKKPILLVHGEEDNNSGTLT-----MQSDRFFNALKGHGALCRLVILPFES-----HGYAARESIMHVLWETDR 892 (954)
Q Consensus 823 ~~~~~~~~~P~Lii~G~~D~~v~~~~-----~~~~~~~~~l~~~g~~~~~~~~~~~~-----H~~~~~~~~~~~~~~i~~ 892 (954)
......+++|+|++||++|..+| . ++++++++.++..|.+++++++|++| |.+....+..++.+.+.+
T Consensus 238 ~~~~~~~~~PvLii~G~~D~~~p--~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~gi~G~~H~~~~~~~~~~~~~~i~~ 315 (328)
T 1qlw_A 238 EDVKPLTSIPVLVVFGDHIEEFP--RWAPRLKACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILD 315 (328)
T ss_dssp GGCGGGTTSCEEEEECSSCTTCT--TTHHHHHHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHH
T ss_pred HHHhhccCCCEEEEeccCCcccc--chhhHHHHHHHHHHHHHHhCCCceEEEcCCCCcCCCcccchhccCHHHHHHHHHH
Confidence 11122356899999999999998 7 88999999999999999999999665 987655557889999999
Q ss_pred HHHHhcc
Q 002194 893 WLQKYCV 899 (954)
Q Consensus 893 fl~~~l~ 899 (954)
||++++.
T Consensus 316 fl~~~~~ 322 (328)
T 1qlw_A 316 WIGRNTA 322 (328)
T ss_dssp HHHHTCC
T ss_pred HHHhccc
Confidence 9999864
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-15 Score=159.72 Aligned_cols=213 Identities=15% Similarity=0.143 Sum_probs=136.4
Q ss_pred EEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC
Q 002194 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (954)
Q Consensus 643 ~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (954)
++...||.+++...+- + -|.||++||.+.... .| ......|+++||.|++ ++
T Consensus 2 ~~~~~~g~~l~y~~~G--------~--g~~vvllHG~~~~~~-----------~w----~~~~~~l~~~g~~vi~---~D 53 (271)
T 3ia2_A 2 TFVAKDGTQIYFKDWG--------S--GKPVLFSHGWLLDAD-----------MW----EYQMEYLSSRGYRTIA---FD 53 (271)
T ss_dssp EEECTTSCEEEEEEES--------S--SSEEEEECCTTCCGG-----------GG----HHHHHHHHTTTCEEEE---EC
T ss_pred eEEcCCCCEEEEEccC--------C--CCeEEEECCCCCcHH-----------HH----HHHHHHHHhCCceEEE---ec
Confidence 3567899998776652 1 245888999642110 11 1345567789999999 66
Q ss_pred CCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh-CCCcccEEEEeccCCCCCC-
Q 002194 723 IIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH-APHLFCCGIARSGAYNRTL- 798 (954)
Q Consensus 723 ~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~~~~~~~~- 798 (954)
.+|+|.+..+ ........+|+.+.++.+ +.+++.++||||||.+++.+++. .|++++++|++++......
T Consensus 54 ~~G~G~S~~~~~~~~~~~~a~d~~~~l~~l------~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~ 127 (271)
T 3ia2_A 54 RRGFGRSDQPWTGNDYDTFADDIAQLIEHL------DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQ 127 (271)
T ss_dssp CTTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBC
T ss_pred CCCCccCCCCCCCCCHHHHHHHHHHHHHHh------CCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCCccccC
Confidence 6788887543 233456677877777765 34689999999999977666555 4889999999876432110
Q ss_pred ---CCCCCcccc-----chhhhc--------------------------------------------HHHHHhcCccccc
Q 002194 799 ---TPFGFQNED-----RTLWEA--------------------------------------------TSTYVEMSPFMSA 826 (954)
Q Consensus 799 ---~~~~~~~~~-----~~~~~~--------------------------------------------~~~~~~~sp~~~~ 826 (954)
.+....... ...... ...+...+....+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 207 (271)
T 3ia2_A 128 KPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDM 207 (271)
T ss_dssp BTTBTTSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCBCHHHH
T ss_pred CCCCcccccHHHHHHHHHHHHhhHHHHHHHhhHhhhccccccccCHHHHHHHHhhhhhccHHHHHHHHHHhhccCCcccc
Confidence 000000000 000000 0001111222345
Q ss_pred CCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
.++++|+|++||++|.++| ++.+.+++..+.. ..++.++|++||.+. .+..+.+.+.+.+||.
T Consensus 208 ~~i~~P~Lvi~G~~D~~~p--~~~~~~~~~~~~~---~~~~~~~~~~gH~~~-~e~p~~~~~~i~~Fl~ 270 (271)
T 3ia2_A 208 AKIDVPTLVIHGDGDQIVP--FETTGKVAAELIK---GAELKVYKDAPHGFA-VTHAQQLNEDLLAFLK 270 (271)
T ss_dssp TTCCSCEEEEEETTCSSSC--GGGTHHHHHHHST---TCEEEEETTCCTTHH-HHTHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEEeCCCCcCC--hHHHHHHHHHhCC---CceEEEEcCCCCccc-ccCHHHHHHHHHHHhh
Confidence 7889999999999999998 7775555554422 368999999999874 5667788888888875
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.3e-16 Score=162.00 Aligned_cols=187 Identities=14% Similarity=0.141 Sum_probs=131.0
Q ss_pred EEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch
Q 002194 654 ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND 733 (954)
Q Consensus 654 ~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~ 733 (954)
+.+|+|+....+ .++.|+||++||+.... ......+..|+++||.|+.+++++. +.
T Consensus 34 ~~~~~p~~~~~~-g~~~p~vv~~HG~~~~~---------------~~~~~~~~~l~~~G~~v~~~d~~~s---~~----- 89 (258)
T 2fx5_A 34 CRIYRPRDLGQG-GVRHPVILWGNGTGAGP---------------STYAGLLSHWASHGFVVAAAETSNA---GT----- 89 (258)
T ss_dssp EEEEEESSTTGG-GCCEEEEEEECCTTCCG---------------GGGHHHHHHHHHHTCEEEEECCSCC---TT-----
T ss_pred EEEEeCCCCccc-CCCceEEEEECCCCCCc---------------hhHHHHHHHHHhCCeEEEEecCCCC---cc-----
Confidence 778888752211 12589999999974210 1122456778899999999766521 11
Q ss_pred hhHHHHHHHHHHHHHHHHHc---------CCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCc
Q 002194 734 RFVEQLVACAEAAVEEVVRR---------GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQ 804 (954)
Q Consensus 734 ~~~~~~~~D~~~av~~l~~~---------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~ 804 (954)
..|+..+++++.+. ..+|.++++++||||||.+++.++ .+++++++|+++|..... .
T Consensus 90 ------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a--~~~~v~~~v~~~~~~~~~----~-- 155 (258)
T 2fx5_A 90 ------GREMLACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQPYTLGL----G-- 155 (258)
T ss_dssp ------SHHHHHHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT--TSTTCCEEEEEEECCSST----T--
T ss_pred ------HHHHHHHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc--cCcCeEEEEEecCccccc----c--
Confidence 12334455555442 246778999999999999999887 446899999998753210 0
Q ss_pred cccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHH-HHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccH
Q 002194 805 NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQ-SDRFFNALKGHGALCRLVILPFESHGYAARESI 883 (954)
Q Consensus 805 ~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~ 883 (954)
.....+.++++|+|++||++|..+| ... +.++++. .+.+++++++++++|.+.. +..
T Consensus 156 ----------------~~~~~~~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~---~~~~~~~~~~~g~~H~~~~-~~~ 213 (258)
T 2fx5_A 156 ----------------HDSASQRRQQGPMFLMSGGGDTIAF--PYLNAQPVYRR---ANVPVFWGERRYVSHFEPV-GSG 213 (258)
T ss_dssp ----------------CCGGGGGCCSSCEEEEEETTCSSSC--HHHHTHHHHHH---CSSCEEEEEESSCCTTSST-TTC
T ss_pred ----------------cchhhhccCCCCEEEEEcCCCcccC--chhhHHHHHhc---cCCCeEEEEECCCCCcccc-chH
Confidence 0112456688999999999999998 775 7777766 4567999999999998753 334
Q ss_pred HHHHHHHHHHHHHhccc
Q 002194 884 MHVLWETDRWLQKYCVS 900 (954)
Q Consensus 884 ~~~~~~i~~fl~~~l~~ 900 (954)
..+.+.+.+||++++..
T Consensus 214 ~~~~~~i~~fl~~~l~~ 230 (258)
T 2fx5_A 214 GAYRGPSTAWFRFQLMD 230 (258)
T ss_dssp GGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 57788899999988854
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.8e-16 Score=151.17 Aligned_cols=172 Identities=12% Similarity=0.058 Sum_probs=123.0
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~ 749 (954)
.|+||++||.... ...+ ........|+++||.|+. .+.+|+|.+..... .....+++..++++
T Consensus 4 ~~~vv~~HG~~~~-----------~~~~--~~~~~~~~l~~~g~~v~~---~d~~g~g~s~~~~~-~~~~~~~~~~~~~~ 66 (176)
T 2qjw_A 4 RGHCILAHGFESG-----------PDAL--KVTALAEVAERLGWTHER---PDFTDLDARRDLGQ-LGDVRGRLQRLLEI 66 (176)
T ss_dssp SCEEEEECCTTCC-----------TTSH--HHHHHHHHHHHTTCEEEC---CCCHHHHTCGGGCT-TCCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCC-----------ccHH--HHHHHHHHHHHCCCEEEE---eCCCCCCCCCCCCC-CCCHHHHHHHHHHH
Confidence 6899999996311 0111 112456678889999999 55566666543211 12233444555666
Q ss_pred HHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCC
Q 002194 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL 829 (954)
Q Consensus 750 l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ 829 (954)
+.+.. +.++++++|||+||.+++.++.++| ++++|+++|..+.... ....++
T Consensus 67 ~~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~~------------------------~~~~~~ 118 (176)
T 2qjw_A 67 ARAAT--EKGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGPL------------------------PALDAA 118 (176)
T ss_dssp HHHHH--TTSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTTB------------------------CCCCCC
T ss_pred HHhcC--CCCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCcccc------------------------Cccccc
Confidence 66553 3479999999999999999999997 9999999987542110 004567
Q ss_pred CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
++|+|++||++|..+| ...+.++++.+ +++++++ +++|.+ .+....+.+.+.+||++
T Consensus 119 ~~P~l~i~g~~D~~~~--~~~~~~~~~~~-----~~~~~~~-~~~H~~--~~~~~~~~~~i~~fl~~ 175 (176)
T 2qjw_A 119 AVPISIVHAWHDELIP--AADVIAWAQAR-----SARLLLV-DDGHRL--GAHVQAASRAFAELLQS 175 (176)
T ss_dssp SSCEEEEEETTCSSSC--HHHHHHHHHHH-----TCEEEEE-SSCTTC--TTCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCccC--HHHHHHHHHhC-----CceEEEe-CCCccc--cccHHHHHHHHHHHHHh
Confidence 8999999999999998 89999998887 3588888 889998 35667777888888764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-14 Score=155.64 Aligned_cols=297 Identities=9% Similarity=-0.007 Sum_probs=175.1
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCC
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (954)
.+.|+++++.++.+.. ....|.++|+++++.......+... . .++|+|||+.|+++..
T Consensus 2 ~~~~~~~~~~~~v~~~--------~~~~v~~~d~~~~~~~~~~~~~~~~----~-~~~~s~dg~~l~~~~~--------- 59 (331)
T 3u4y_A 2 NAMFQTTSNFGIVVEQ--------HLRRISFFSTDTLEILNQITLGYDF----V-DTAITSDCSNVVVTSD--------- 59 (331)
T ss_dssp -----CCCCEEEEEEG--------GGTEEEEEETTTCCEEEEEECCCCE----E-EEEECSSSCEEEEEES---------
T ss_pred ceeEcCCCCEEEEEec--------CCCeEEEEeCcccceeeeEEccCCc----c-eEEEcCCCCEEEEEeC---------
Confidence 3567788877666542 2568999999998886665544322 4 7899999998887610
Q ss_pred CCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc--eeEcCCCccccc-cccCCCCcEEEE
Q 002194 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGPPAVYTS-LDPSPDEKYILI 348 (954)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~--~~~l~~~~~~~~-~~~SpDGk~l~~ 348 (954)
....|+++|+ +++ ...+........ ++|||||++|+
T Consensus 60 ---------------------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~- 99 (331)
T 3u4y_A 60 ---------------------------------------FCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV- 99 (331)
T ss_dssp ---------------------------------------TTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE-
T ss_pred ---------------------------------------CCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEE-
Confidence 2346889999 776 344444444455 89999999999
Q ss_pred EeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (954)
...... ....+++||+++++........ .....++|+|||+.+++. ..
T Consensus 100 ~~~~~~---------~~~~i~v~d~~~~~~~~~~~~~-------------~~~~~~~~spdg~~l~~~-~~--------- 147 (331)
T 3u4y_A 100 TVTGLN---------HPFNMQSYSFLKNKFISTIPIP-------------YDAVGIAISPNGNGLILI-DR--------- 147 (331)
T ss_dssp ECCCSS---------SSCEEEEEETTTTEEEEEEECC-------------TTEEEEEECTTSSCEEEE-EE---------
T ss_pred EecCCC---------CcccEEEEECCCCCeEEEEECC-------------CCccceEECCCCCEEEEE-ec---------
Confidence 442211 0127999999876654332211 223578999999976554 11
Q ss_pred ccCCCe-EEEEecCCCCCCCce----EEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCc-EEEecCC
Q 002194 429 VTPRDI-IYTQQAEPVQGEGPE----ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP-RILFDRS 502 (954)
Q Consensus 429 ~~~~~~-l~~~~~~~~~g~~~~----~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~-~~l~~~~ 502 (954)
..+. +++|+++ ..+... ...........++|+|||++|+++...+ ..|+++++.++.... .......
T Consensus 148 --~~~~~i~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~---~~v~v~d~~~~~~~~~~~~~~~~ 220 (331)
T 3u4y_A 148 --SSANTVRRFKID--ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG---NSIGILETQNPENITLLNAVGTN 220 (331)
T ss_dssp --TTTTEEEEEEEC--TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT---TEEEEEECSSTTSCEEEEEEECS
T ss_pred --CCCceEEEEEEC--CCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCC---CeEEEEECCCCcccceeeeccCC
Confidence 1234 7777752 223321 1122233456789999999988876544 357788887752100 2222211
Q ss_pred CCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEe
Q 002194 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVAL 582 (954)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 582 (954)
..... ++|+|||++++.... ....|++||+++++.+.+.......... ...
T Consensus 221 -~~~~~------~~~spdg~~l~v~~~--------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~ 271 (331)
T 3u4y_A 221 -NLPGT------IVVSRDGSTVYVLTE--------------------STVDVFNFNQLSGTLSFVKSFGHGLLID--PRP 271 (331)
T ss_dssp -SCCCC------EEECTTSSEEEEECS--------------------SEEEEEEEETTTTEEEEEEEEECCCCCC--CGG
T ss_pred -CCCce------EEECCCCCEEEEEEc--------------------CCCEEEEEECCCCceeeecccccccccC--CCC
Confidence 11112 789999998877642 1224899999999876554322110000 000
Q ss_pred ccCCccccccccCCEEEEEEecCCCCceEEEEECCCCcee
Q 002194 583 MSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (954)
Q Consensus 583 ~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~ 622 (954)
.......+|||||+++++.... ...+.++++.+....
T Consensus 272 ~~~~~~~~~spdg~~l~v~~~~---~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 272 LFGANQMALNKTETKLFISANI---SRELKVFTISGKVVG 308 (331)
T ss_dssp GTTCCCEEECTTSSEEEEEETT---TTEEEEEETTSCEEE
T ss_pred cccccceEECCCCCEEEEecCC---CCcEEEEEecCCccc
Confidence 0000124799999988776543 346889997665433
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-15 Score=164.07 Aligned_cols=231 Identities=10% Similarity=0.067 Sum_probs=142.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+...+||||+ +|+... . ...|.++|+++++...............+..++|+|||++|+...
T Consensus 84 ~v~~~~~s~d~-~l~~~s-------~--dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs------- 146 (344)
T 4gqb_B 84 GVADLTWVGER-GILVAS-------D--SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS------- 146 (344)
T ss_dssp CEEEEEEETTT-EEEEEE-------T--TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE-------
T ss_pred CEEEEEEeCCC-eEEEEE-------C--CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe-------
Confidence 57889999996 566543 2 346667777776543222110001112277899999999998761
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~-~~~~~~~~SpDGk~l 346 (954)
....|.++|+ +|+. ..+... ..+..++|+|||+.+
T Consensus 147 ------------------------------------------~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 147 ------------------------------------------KDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp ------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred ------------------------------------------CCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 1234667788 7754 344444 778899999999866
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
+++... ++.|.+||+..++ ...+..... ...+..++|+|++..++...
T Consensus 185 l~s~s~------------D~~v~iwd~~~~~~~~~~~~~~~-----------~~~~~~~~~~p~~~~~l~sg-------- 233 (344)
T 4gqb_B 185 FLSCSE------------DNRILLWDTRCPKPASQIGCSAP-----------GYLPTSLAWHPQQSEVFVFG-------- 233 (344)
T ss_dssp EEEEET------------TSCEEEEETTSSSCEEECC---------------CCCEEEEEECSSCTTEEEEE--------
T ss_pred eeeecc------------ccccccccccccceeeeeeccee-----------eccceeeeecCCCCcceEEe--------
Confidence 554422 2389999998654 333322110 01235789999877665541
Q ss_pred cccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCC
Q 002194 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~ 505 (954)
+..+.|.+||+ .++.....+..+...+..++|+|||..++++...++ .|.++|+.++ + ...+..+...
T Consensus 234 ----~~dg~v~~wd~--~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~---~i~vwd~~~~--~-~~~~~~H~~~ 301 (344)
T 4gqb_B 234 ----DENGTVSLVDT--KSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC---SLAVLDSSLS--E-LFRSQAHRDF 301 (344)
T ss_dssp ----ETTSEEEEEES--CC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTS---CEEEECTTCC--E-EEEECCCSSC
T ss_pred ----ccCCcEEEEEC--CCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC---eEEEEECCCC--c-EEEEcCCCCC
Confidence 23457899996 345555677777788899999999976444443333 2555577664 2 2233444444
Q ss_pred ccCCCCCCCeeeccCCcEEEEEE
Q 002194 506 VYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 506 ~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+.. ++|+|||+.++...
T Consensus 302 V~~------v~~sp~~~~llas~ 318 (344)
T 4gqb_B 302 VRD------ATWSPLNHSLLTTV 318 (344)
T ss_dssp EEE------EEECSSSTTEEEEE
T ss_pred EEE------EEEeCCCCeEEEEE
Confidence 554 89999998766554
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-15 Score=164.94 Aligned_cols=203 Identities=10% Similarity=0.062 Sum_probs=135.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..++|||||+.|+..+ ++....|.++|+.+++.......... +..++|||||++|+...
T Consensus 135 ~~~~v~fSpDg~~la~as-------~~~d~~i~iwd~~~~~~~~~~~~~~~-----V~~v~fspdg~~l~s~s------- 195 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIAS-------SKVPAIMRIIDPSDLTEKFEIETRGE-----VKDLHFSTDGKVVAYIT------- 195 (365)
T ss_dssp CEEEEEECTTSSCEEEEE-------SCSSCEEEEEETTTTEEEEEEECSSC-----CCEEEECTTSSEEEEEC-------
T ss_pred CEEEEEEcCCCCEEEEEE-------CCCCCEEEEeECCCCcEEEEeCCCCc-----eEEEEEccCCceEEecc-------
Confidence 355689999999998865 33356788899998877655443332 77899999999998761
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee-E-cCC-C-ccccccccCCCCc
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-E-IGP-P-AVYTSLDPSPDEK 344 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-~-l~~-~-~~~~~~~~SpDGk 344 (954)
...+.+++. +|... . ... . ..+..++|||||+
T Consensus 196 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~ 232 (365)
T 4h5i_A 196 -------------------------------------------GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT 232 (365)
T ss_dssp -------------------------------------------SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE
T ss_pred -------------------------------------------ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC
Confidence 123556666 55322 2 222 2 5678899999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
.++..+..... ...+++|++.......+..... .+....+..++|||||+.|+..
T Consensus 233 ~l~~~s~d~~~---------~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~V~~~~~Spdg~~lasg-------- 287 (365)
T 4h5i_A 233 VLIAASLKKGK---------GIVLTKISIKSGNTSVLRSKQV--------TNRFKGITSMDVDMKGELAVLA-------- 287 (365)
T ss_dssp EEEEEEESSSC---------CEEEEEEEEETTEEEEEEEEEE--------ESSCSCEEEEEECTTSCEEEEE--------
T ss_pred EEEEEecCCcc---------eeEEeecccccceecceeeeee--------cCCCCCeEeEEECCCCCceEEE--------
Confidence 99988755321 1257788877554322211100 0112345789999999977765
Q ss_pred ccccccCCCeEEEEecCCCCCCCc-eEE-eecccccCceeeccCCceEEEEEeccccceEEEEEcCC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGP-EIL-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~-~~l-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~ 489 (954)
+..+.|.+|++ .+++. ..+ ..+...+..++|||||++|+..+.++. .+||.++.+
T Consensus 288 -----s~D~~V~iwd~---~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t--vrvw~ip~~ 344 (365)
T 4h5i_A 288 -----SNDNSIALVKL---KDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANT--IHIIKLPLN 344 (365)
T ss_dssp -----ETTSCEEEEET---TTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSE--EEEEECCTT
T ss_pred -----cCCCEEEEEEC---CCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCe--EEEEEcCCC
Confidence 34567999996 44433 333 456778899999999999998877665 777777543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.9e-15 Score=161.06 Aligned_cols=284 Identities=11% Similarity=0.048 Sum_probs=156.4
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcccc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (954)
.|++|.+... .++...+...........++|||||+ |+++... ++...|+++++++++.+.+...... .
T Consensus 17 ~i~v~~~d~~--tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~------~~~~~v~~~~~~~g~~~~~~~~~~~--~ 85 (347)
T 3hfq_A 17 GIYQGTLDTT--AKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKE------DDEGGIAAWQIDGQTAHKLNTVVAP--G 85 (347)
T ss_dssp EEEEEEEETT--TTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEE------TTEEEEEEEEEETTEEEEEEEEEEE--S
T ss_pred CEEEEEEcCC--CCeEEEeeeeeccCCcceEEEccCCe-EEEEEec------CCCceEEEEEecCCcEEEeeeeecC--C
Confidence 5666666322 24444433222223577789999999 7665531 2357899999888877666541110 0
Q ss_pred ccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--
Q 002194 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-- 321 (954)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-- 321 (954)
..+..++|+|||+.|+++.. ....+.++++
T Consensus 86 ~~p~~~a~spdg~~l~~~~~------------------------------------------------~~~~v~v~~~~~ 117 (347)
T 3hfq_A 86 TPPAYVAVDEARQLVYSANY------------------------------------------------HKGTAEVMKIAA 117 (347)
T ss_dssp CCCSEEEEETTTTEEEEEET------------------------------------------------TTTEEEEEEECT
T ss_pred CCCEEEEECCCCCEEEEEeC------------------------------------------------CCCEEEEEEeCC
Confidence 11457899999999987711 1122334444
Q ss_pred CCceeEcCC---C----------ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc-CceEEEeccCCCc
Q 002194 322 DGTVKEIGP---P----------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLA 387 (954)
Q Consensus 322 ~G~~~~l~~---~----------~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~-g~~~~~l~~~~~~ 387 (954)
+|..+.+.. . .....++|||||+ +++.... ...+++|+++ ++....+......
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~------------~~~v~~~~~~~~g~~~~~~~~~~~ 184 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG------------SDKVYVYNVSDAGQLSEQSVLTME 184 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT------------TTEEEEEEECTTSCEEEEEEEECC
T ss_pred CCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC------------CCEEEEEEECCCCcEEEeeeEEcC
Confidence 443332211 1 1245689999999 5554422 2379999998 5544433221110
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec---c------ccc
Q 002194 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL---D------LRY 458 (954)
Q Consensus 388 ~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~---~------~~~ 458 (954)
...+++.++|+|||+.+++. . ...+.+.+++++. .+++.+.+... . ...
T Consensus 185 ---------~g~~p~~~~~spdg~~l~v~-~-----------~~~~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~ 242 (347)
T 3hfq_A 185 ---------AGFGPRHLVFSPDGQYAFLA-G-----------ELSSQIASLKYDT-QTGAFTQLGIVKTIPADYTAHNGA 242 (347)
T ss_dssp ---------TTCCEEEEEECTTSSEEEEE-E-----------TTTTEEEEEEEET-TTTEEEEEEEEESSCTTCCSCCEE
T ss_pred ---------CCCCCceEEECCCCCEEEEE-e-----------CCCCEEEEEEecC-CCCceEEeeeeeecCCCCCCCCcc
Confidence 01244578999999966554 1 1234666666521 23343333211 1 224
Q ss_pred CceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEec--CCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCc
Q 002194 459 GGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD--RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGT 536 (954)
Q Consensus 459 ~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~ 536 (954)
..++|||||++|+++...++ ...+|.++.++ ....+.. ........ ++|+|||++|+......
T Consensus 243 ~~i~~spdG~~l~v~~~~~~-~v~v~~~~~~g---~~~~~~~~~~~~~~~~~------~~~spdg~~l~v~~~~~----- 307 (347)
T 3hfq_A 243 AAIRLSHDGHFLYVSNRGYN-TLAVFAVTADG---HLTLIQQISTEGDFPRD------FDLDPTEAFVVVVNQNT----- 307 (347)
T ss_dssp EEEEECTTSCEEEEEEETTT-EEEEEEECGGG---CEEEEEEEECSSSCCCE------EEECTTSSEEEEEETTT-----
T ss_pred eeEEECCCCCEEEEEeCCCC-EEEEEEECCCC---cEEEeEEEecCCCCcCe------EEECCCCCEEEEEEcCC-----
Confidence 55899999999877655433 24555555332 2222221 11111111 78999999988776210
Q ss_pred EEEEecCCCCCCCCCCeEEEEECCCCCeEEEec
Q 002194 537 YILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (954)
Q Consensus 537 ~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 569 (954)
+.-.+|.+|.++|+.+.+..
T Consensus 308 -------------~~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 308 -------------DNATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp -------------TEEEEEEECTTTCCEEEEEE
T ss_pred -------------CcEEEEEEeCCCCeEEeccc
Confidence 12234555788888776643
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-14 Score=189.73 Aligned_cols=378 Identities=11% Similarity=0.024 Sum_probs=219.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||+.++..... .+.+|++.. + .....+. .....
T Consensus 800 ~v~~~~~s~dg~~l~~~~~~----------------------------------~v~~~d~~~-~--~~~~~~~-~~~~~ 841 (1249)
T 3sfz_A 800 IVKCCSWSADGDKIIVAAKN----------------------------------KVLLFDIHT-S--GLLAEIH-TGHHS 841 (1249)
T ss_dssp CBCCCCBCTTSSEEEEEETT----------------------------------EEEEEETTT-C--CEEEEEE-CSSSS
T ss_pred eEEEEEECCCCCEEEEEcCC----------------------------------cEEEEEecC-C--CceeEEc-CCCCC
Confidence 45678999999999998763 789999854 2 1222222 12334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....|||||+.++... ....|.+++.+++............ +..++|+|||+.|+....+..-..
T Consensus 842 ~v~~~~~sp~~~~l~~~~---------~dg~v~vwd~~~~~~~~~~~~h~~~----v~~v~~spdg~~l~s~s~dg~v~v 908 (1249)
T 3sfz_A 842 TIQYCDFSPYDHLAVIAL---------SQYCVELWNIDSRLKVADCRGHLSW----VHGVMFSPDGSSFLTASDDQTIRV 908 (1249)
T ss_dssp CCCEEEECSSTTEEEEEC---------SSSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceEEEEEcCCCCEEEEEe---------CCCeEEEEEcCCCceeeecCCCccc----eEEEEECCCCCEEEEEeCCCeEEE
Confidence 788999999999988854 2456788888887665443333322 778999999999887744322110
Q ss_pred CC------CCCCCCCCc-----------eeecc-----------CCce-eeechhhhhccCcccccccc-ccccceEEEE
Q 002194 270 PK------KPLVPLGPK-----------MQSNE-----------KRDI-IQVRTFQDLLKDEYDEDLFD-YYATTQLVLV 319 (954)
Q Consensus 270 ~~------~~~~~~~~~-----------~~~~~-----------~~~~-~~~r~~~d~l~~~~d~~~~~-~~~~~~l~~~ 319 (954)
.. ......... ..... .... .........+....++..+. -...+.|+++
T Consensus 909 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~ 988 (1249)
T 3sfz_A 909 WETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKII 988 (1249)
T ss_dssp EEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEE
T ss_pred EEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEE
Confidence 00 000000000 00000 0000 00000000000111111111 1133567777
Q ss_pred Ee-CCcee-EcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccc
Q 002194 320 SL-DGTVK-EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNS 396 (954)
Q Consensus 320 ~~-~G~~~-~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~ 396 (954)
++ ++... .+... ..+..++|||||++|+..+.+ +.+.+|++.+++...+..+.
T Consensus 989 d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-------------g~i~vwd~~~~~~~~~~~~~----------- 1044 (1249)
T 3sfz_A 989 ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED-------------SVIQVWNWQTGDYVFLQAHQ----------- 1044 (1249)
T ss_dssp ETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS-------------SBEEEEETTTTEEECCBCCS-----------
T ss_pred EcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC-------------CEEEEEECCCCceEEEecCC-----------
Confidence 87 66433 33333 778899999999999988743 38999999987655433221
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEec
Q 002194 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (954)
Q Consensus 397 ~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 476 (954)
..+..+.|+||++ ++.. +..+.+.+|++ .++.....+..+...+..++|+|||+.|+..+.+
T Consensus 1045 --~~v~~~~~~~~~~-l~~~-------------~~dg~v~vwd~--~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d 1106 (1249)
T 3sfz_A 1045 --ETVKDFRLLQDSR-LLSW-------------SFDGTVKVWNV--ITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD 1106 (1249)
T ss_dssp --SCEEEEEECSSSE-EEEE-------------ESSSEEEEEET--TTTCCCEEEECCSSCCCCEEECSSSSSCEEECCS
T ss_pred --CcEEEEEEcCCCc-EEEE-------------ECCCcEEEEEC--CCCceeEEEcccCCcEEEEEECCCCCEEEEEcCC
Confidence 3456789999886 2222 33557999996 4455556677778888999999999999887655
Q ss_pred cccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEE
Q 002194 477 KTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDL 556 (954)
Q Consensus 477 ~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 556 (954)
+. |.+++..++ .+......+...+.. ++|||||++++.... ...|++
T Consensus 1107 ~~----v~iwd~~~~--~~~~~l~~h~~~v~~------~~~s~dg~~lat~~~---------------------dg~i~v 1153 (1249)
T 3sfz_A 1107 KT----AKIWSFDLL--SPLHELKGHNGCVRC------SAFSLDGILLATGDD---------------------NGEIRI 1153 (1249)
T ss_dssp SC----CCEECSSSS--SCSBCCCCCSSCEEE------EEECSSSSEEEEEET---------------------TSCCCE
T ss_pred Cc----EEEEECCCc--ceeeeeccCCCcEEE------EEECCCCCEEEEEeC---------------------CCEEEE
Confidence 43 445555554 222222222222333 789999999988762 123889
Q ss_pred EECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCce
Q 002194 557 FDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (954)
Q Consensus 557 ~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~ 621 (954)
||+.+++.......... ..........-...+|||||+.++.. + ..+.+|++.+++.
T Consensus 1154 wd~~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~fs~dg~~l~s~--~----g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1154 WNVSDGQLLHSCAPISV--EEGTATHGGWVTDVCFSPDSKTLVSA--G----GYLKWWNVATGDS 1210 (1249)
T ss_dssp EESSSSCCCCCCCCCC---------CCSCCCEEEECTTSSCEEEE--S----SSEEEBCSSSCBC
T ss_pred EECCCCceEEEeccccc--cccccccCceEEEEEECCCCCEEEEC--C----CeEEEEECCCCce
Confidence 99988775433211100 00000000111236799999988643 2 5799999888764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-14 Score=160.27 Aligned_cols=289 Identities=10% Similarity=0.067 Sum_probs=167.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+..++|||||++|+..+... .+--...|++++...+................+..++|+||+++|+..
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~---~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s------- 112 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLS---SRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVAS------- 112 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSS---SSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEE-------
T ss_pred CCEEEEEECCCCCEEEEEcCCC---CccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEE-------
Confidence 4688999999999998865311 111145788888776654322111111111226789999999877644
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE-----cCCC-ccccccccCC
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-----IGPP-AVYTSLDPSP 341 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~-----l~~~-~~~~~~~~Sp 341 (954)
....|.++|+ +++... .... ..+..++|||
T Consensus 113 -------------------------------------------~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 149 (357)
T 4g56_B 113 -------------------------------------------DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS 149 (357)
T ss_dssp -------------------------------------------TTSCEEEC--------CCCCEEECCCSSCEEEEEECS
T ss_pred -------------------------------------------CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC
Confidence 1123555566 543221 1122 6678899999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~ 420 (954)
||++|+..+.+ +.|.+||+.+++.. .+..+ ...+..++|+|+++.+++..
T Consensus 150 dg~~l~sgs~d-------------g~v~iwd~~~~~~~~~~~~h-------------~~~v~~v~~s~~~~~~~~s~--- 200 (357)
T 4g56_B 150 DGTQAVSGGKD-------------FSVKVWDLSQKAVLKSYNAH-------------SSEVNCVAACPGKDTIFLSC--- 200 (357)
T ss_dssp SSSEEEEEETT-------------SCEEEEETTTTEEEEEECCC-------------SSCEEEEEECTTCSSCEEEE---
T ss_pred CCCEEEEEeCC-------------CeEEEEECCCCcEEEEEcCC-------------CCCEEEEEEccCCCceeeee---
Confidence 99999987743 38999999876543 33322 13456789999998665541
Q ss_pred cCCCccccccCCCeEEEEecCCCCCCCceEEe--ecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002194 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (954)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 498 (954)
+..+.|.+|++ ..+.....+. .....+..++|+|++..++.....++ .|.++|+.++ +....
T Consensus 201 ---------~~dg~v~~wd~--~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~---~i~~wd~~~~--~~~~~ 264 (357)
T 4g56_B 201 ---------GEDGRILLWDT--RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG---NVSLVNIKNP--DSAQT 264 (357)
T ss_dssp ---------ETTSCEEECCT--TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS---CEEEEESSCG--GGCEE
T ss_pred ---------ccCCceEEEEC--CCCceeeeeeeccccccccchhhhhcccceEEEeeccc---ceeEEECCCC--cEeEE
Confidence 23457889986 2333223222 23445677999999766555544433 3556666664 33333
Q ss_pred ecCCCCCccCCCCCCCeeeccCCcE-EEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccc
Q 002194 499 FDRSSEDVYSDPGSPMMRRTSTGTY-VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 577 (954)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 577 (954)
.......+.. ++|+|+|+. |+.... ...|++||+++++..+.....+.
T Consensus 265 ~~~~~~~v~~------l~~sp~~~~~lasgs~---------------------D~~i~iwd~~~~~~~~~~~H~~~---- 313 (357)
T 4g56_B 265 SAVHSQNITG------LAYSYHSSPFLASISE---------------------DCTVAVLDADFSEVFRDLSHRDF---- 313 (357)
T ss_dssp ECCCSSCEEE------EEECSSSSCCEEEEET---------------------TSCEEEECTTSCEEEEECCCSSC----
T ss_pred EeccceeEEE------EEEcCCCCCEEEEEeC---------------------CCEEEEEECCCCcEeEECCCCCC----
Confidence 4444444443 789999864 544431 12499999999877665433321
Q ss_pred eeEEeccCCccccccc-cCCEEEEEEecCCCCceEEEEECCC
Q 002194 578 TTVALMSDQTEGDLYL-NQLKILTSKESKTENTQYYIQSWPD 618 (954)
Q Consensus 578 ~~~~~~~~~~~~~~s~-dg~~l~~~~~s~~~p~~l~~~~~~~ 618 (954)
+.. .+||| |++.|+. .+. -..+++|++..
T Consensus 314 -V~~-------vafsP~d~~~l~s-~s~---Dg~v~iW~~~~ 343 (357)
T 4g56_B 314 -VTG-------VAWSPLDHSKFTT-VGW---DHKVLHHHLPS 343 (357)
T ss_dssp -EEE-------EEECSSSTTEEEE-EET---TSCEEEEECC-
T ss_pred -EEE-------EEEeCCCCCEEEE-EcC---CCeEEEEECCC
Confidence 222 46898 6665543 332 24588888754
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=168.85 Aligned_cols=186 Identities=16% Similarity=0.115 Sum_probs=128.6
Q ss_pred CCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcc-----------------
Q 002194 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE----------------- 730 (954)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~----------------- 730 (954)
+++|+||++||+.... .. ....+..|+++||+|+++++++ +|.+.
T Consensus 96 ~~~P~Vv~~HG~~~~~-----------~~----~~~~a~~La~~Gy~V~~~d~~g---~g~s~~~~~~~~~~~~~~~~~~ 157 (383)
T 3d59_A 96 EKYPLVVFSHGLGAFR-----------TL----YSAIGIDLASHGFIVAAVEHRD---RSASATYYFKDQSAAEIGDKSW 157 (383)
T ss_dssp SCEEEEEEECCTTCCT-----------TT----THHHHHHHHHTTCEEEEECCCS---SCSSEEEECSSHHHHHHTCCEE
T ss_pred CCCCEEEEcCCCCCCc-----------hH----HHHHHHHHHhCceEEEEeccCC---CCccceeecCCccccccCCcee
Confidence 3699999999963110 11 2356788999999999966654 33221
Q ss_pred -------cch------hhHHHHHHHHHHHHHHHHH--------------------cCCCCCCcEEEEeeChHHHHHHHHH
Q 002194 731 -------AND------RFVEQLVACAEAAVEEVVR--------------------RGVAHPSKIAVGGHSYGAFMTANLL 777 (954)
Q Consensus 731 -------~~~------~~~~~~~~D~~~av~~l~~--------------------~~~~d~~ri~l~G~S~GG~~a~~~a 777 (954)
... .......+|+..++++|.+ ...+|++||+++|||+||.+++.++
T Consensus 158 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~~a 237 (383)
T 3d59_A 158 LYLRTLKQEEETHIRNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQTL 237 (383)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHHHH
T ss_pred eeccccCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHHHH
Confidence 000 1122336799999999976 4557888999999999999999998
Q ss_pred HhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHH
Q 002194 778 AHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (954)
Q Consensus 778 ~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~ 857 (954)
.+.+ +|+++|+++|... +. . .....++++|+|++||++|..+ ... +..++
T Consensus 238 ~~~~-~v~a~v~~~~~~~----p~----~----------------~~~~~~i~~P~Lii~g~~D~~~----~~~-~~~~~ 287 (383)
T 3d59_A 238 SEDQ-RFRCGIALDAWMF----PL----G----------------DEVYSRIPQPLFFINSEYFQYP----ANI-IKMKK 287 (383)
T ss_dssp HHCT-TCCEEEEESCCCT----TC----C----------------GGGGGSCCSCEEEEEETTTCCH----HHH-HHHHT
T ss_pred hhCC-CccEEEEeCCccC----CC----c----------------hhhhccCCCCEEEEecccccch----hhH-HHHHH
Confidence 8874 6999999987421 00 0 0122567899999999999753 332 33466
Q ss_pred HHhCCCcEEEEEeCCCCCcCCC------------------cccH----HHHHHHHHHHHHHhcccC
Q 002194 858 LKGHGALCRLVILPFESHGYAA------------------RESI----MHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 858 l~~~g~~~~~~~~~~~~H~~~~------------------~~~~----~~~~~~i~~fl~~~l~~~ 901 (954)
+...+.+++++++++++|.+.. ..+. +.+.+.+++||+++|+..
T Consensus 288 l~~~~~~~~~~~~~g~~H~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~~~L~~~ 353 (383)
T 3d59_A 288 CYSPDKERKMITIRGSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLAFLQKHLGLH 353 (383)
T ss_dssp TCCTTSCEEEEEETTCCGGGGSGGGGSSCHHHHHHTTSSCSSCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhcCCceEEEEeCCCcCCCcccHhhhhhHHhhhhhcccCCcCHHHHHHHHHHHHHHHHHHHcCCc
Confidence 6666788999999999998621 1112 233356999999999654
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.4e-15 Score=157.21 Aligned_cols=214 Identities=17% Similarity=0.203 Sum_probs=138.6
Q ss_pred EEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC
Q 002194 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (954)
+.+.+|.+++...+-|+ + .|.||++||.+... ..| ...+..|+++||.|++ .+.
T Consensus 3 ~~~~~g~~l~y~~~g~~------~--~~~vvllHG~~~~~-----------~~w----~~~~~~l~~~g~~vi~---~D~ 56 (275)
T 1a88_A 3 VTTSDGTNIFYKDWGPR------D--GLPVVFHHGWPLSA-----------DDW----DNQMLFFLSHGYRVIA---HDR 56 (275)
T ss_dssp EECTTSCEEEEEEESCT------T--SCEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEE---ECC
T ss_pred EEccCCCEEEEEEcCCC------C--CceEEEECCCCCch-----------hhH----HHHHHHHHHCCceEEE---EcC
Confidence 45678988887766442 1 36799999964211 111 2345678889999999 667
Q ss_pred CCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCcccEEEEeccCCCCCC--
Q 002194 724 IGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTL-- 798 (954)
Q Consensus 724 ~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~~~~-- 798 (954)
+|+|.+... ........+|+.+.++.+ +.+++.++||||||.+++.+++++ |++++++|++++......
T Consensus 57 ~G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~ 130 (275)
T 1a88_A 57 RGHGRSDQPSTGHDMDTYAADVAALTEAL------DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKS 130 (275)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCB
T ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHHHHc------CCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCCCcccccC
Confidence 788887543 223556677888877776 235899999999999999988776 899999999886421100
Q ss_pred --CCCCCccc----------------------------c-------ch----hhhc-----H-------HHHHhcCcccc
Q 002194 799 --TPFGFQNE----------------------------D-------RT----LWEA-----T-------STYVEMSPFMS 825 (954)
Q Consensus 799 --~~~~~~~~----------------------------~-------~~----~~~~-----~-------~~~~~~sp~~~ 825 (954)
.+...... . .. .|.. . ..+...+....
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (275)
T 1a88_A 131 DTNPDGLPLEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDD 210 (275)
T ss_dssp TTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHH
T ss_pred ccCcccCCHHHHHHHHHHHhhhHHHHHHhhhccccccccCcccccCHHHHHHHHHHhhhcchHhHHHHHhhhhhcccccc
Confidence 00000000 0 00 0000 0 00111122234
Q ss_pred cCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 826 ~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+.++++|+|+++|++|..+| +....+.+..+. .++++++++++||... .+..+.+.+.|.+||.
T Consensus 211 l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 274 (275)
T 1a88_A 211 LKRIDVPVLVAHGTDDQVVP--YADAAPKSAELL---ANATLKSYEGLPHGML-STHPEVLNPDLLAFVK 274 (275)
T ss_dssp HHHCCSCEEEEEETTCSSSC--STTTHHHHHHHS---TTEEEEEETTCCTTHH-HHCHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEecCCCccCC--cHHHHHHHHhhC---CCcEEEEcCCCCccHH-HhCHHHHHHHHHHHhh
Confidence 56789999999999999998 665544443332 2479999999999874 5667788888999985
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-14 Score=160.39 Aligned_cols=239 Identities=15% Similarity=0.123 Sum_probs=145.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..+.|||||+.|+... ....|.++|+++++........... +..++|+|||+.|+...
T Consensus 125 ~v~~v~~s~dg~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~h~~~----v~~~~~~p~~~~l~s~s------- 184 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGA---------EDRLIRIWDIENRKIVMILQGHEQD----IYSLDYFPSGDKLVSGS------- 184 (393)
T ss_dssp BEEEEEECTTSSEEEEEE---------TTSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTSSEEEEEE-------
T ss_pred eEEEEEECCCCCEEEEEc---------CCCeEEEEECCCCcEEEEEccCCCC----EEEEEEcCCCCEEEEec-------
Confidence 367899999999998855 2457788898888765554433332 67899999999988661
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE-cCCCccccccccCC-CCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPPAVYTSLDPSP-DEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~-l~~~~~~~~~~~Sp-DGk~l 346 (954)
....|.++|+ +++... +.....+..++|+| ||++|
T Consensus 185 ------------------------------------------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (393)
T 1erj_A 185 ------------------------------------------GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 222 (393)
T ss_dssp ------------------------------------------TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEE
T ss_pred ------------------------------------------CCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEE
Confidence 1234667788 665433 33335677889999 99999
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
+..+.+ +.+.+||+.++.. ..+...... ..++...+..++|+|||+.++..
T Consensus 223 ~~~s~d-------------~~v~iwd~~~~~~~~~~~~~~~~------~~~h~~~v~~v~~~~~g~~l~s~--------- 274 (393)
T 1erj_A 223 AAGSLD-------------RAVRVWDSETGFLVERLDSENES------GTGHKDSVYSVVFTRDGQSVVSG--------- 274 (393)
T ss_dssp EEEETT-------------SCEEEEETTTCCEEEEEC------------CCCSSCEEEEEECTTSSEEEEE---------
T ss_pred EEEcCC-------------CcEEEEECCCCcEEEeecccccC------CCCCCCCEEEEEECCCCCEEEEE---------
Confidence 888743 3899999986543 333211000 01222446789999999876554
Q ss_pred cccccCCCeEEEEecCCCC----------CCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCc
Q 002194 426 KVEVTPRDIIYTQQAEPVQ----------GEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP 495 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~----------g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 495 (954)
+..+.|.+|++.... +.....+..+...+..++|+|++++|+..+.++ .|.++|..++ ++
T Consensus 275 ----s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~----~v~iwd~~~~--~~ 344 (393)
T 1erj_A 275 ----SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR----GVLFWDKKSG--NP 344 (393)
T ss_dssp ----ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS----EEEEEETTTC--CE
T ss_pred ----eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC----eEEEEECCCC--eE
Confidence 335578888861110 000122334555677899999999988776543 3666677664 33
Q ss_pred EEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 496 RILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
......+...+......+...|+|++.+++...
T Consensus 345 ~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 345 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred EEEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 444444444333300000012345777777665
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-16 Score=176.60 Aligned_cols=269 Identities=10% Similarity=-0.040 Sum_probs=163.0
Q ss_pred CCCCceecCCCCEEEEEecCCCC----CccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecC
Q 002194 110 PLPALSFSPQRDKILFLKRRALP----PLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF 185 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~ 185 (954)
.+.+++|||||+.||..+.+... ....+..+...+..+.++|++. ..+|++.. + +...+..+
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~----------~~~~~~~~-~---~~~~~~~~ 82 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEF----------ENKLDFEL-A---QQNGLLNS 82 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCC----------CCTTTTSC-C---CSSCSSTT
T ss_pred cEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCC----------cceEEEEe-C---CCceEeec
Confidence 68899999999999998876221 1112223334445566666651 11222221 1 11112112
Q ss_pred CCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCC
Q 002194 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (954)
Q Consensus 186 ~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~ 265 (954)
.....+...+|||||++||-.. . ...+.+++.++ ....+. ....--...+..++|||||+.|+.+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s-------~--dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs--- 148 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLS-------N--NGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN--- 148 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEE-------T--TSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE---
T ss_pred CCCCcEEEEEECCCCCEEEEEe-------C--CCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEc---
Confidence 2234789999999999999876 3 33455556443 222232 22100011266899999999999871
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc--------eeEc----CCC-
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--------VKEI----GPP- 331 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~--------~~~l----~~~- 331 (954)
..+.|.++++ ++. ...+ ...
T Consensus 149 ----------------------------------------------~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~ 182 (588)
T 2j04_A 149 ----------------------------------------------EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSK 182 (588)
T ss_dssp ----------------------------------------------TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC
T ss_pred ----------------------------------------------CCCEEEEEECCCCccccccceeeeeeeccccccc
Confidence 1234556676 553 2333 222
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEE----EeccCCCcccCCccccccccCccceeec
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR----ELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~----~l~~~~~~~~~p~~~~~~~~g~~~~~ws 407 (954)
..+.+++||||| |+..+.+ +.+++|+++++... .+.. +.+..+.+++|+
T Consensus 183 ~~V~sVawSPdg--Laass~D-------------~tVrlWd~~~~~~~~~~~tL~~------------~h~~~V~svaFs 235 (588)
T 2j04_A 183 DWVTHIVWYEDV--LVAALSN-------------NSVFSMTVSASSHQPVSRMIQN------------ASRRKITDLKIV 235 (588)
T ss_dssp CCEEEEEEETTE--EEEEETT-------------CCEEEECCCSSSSCCCEEEEEC------------CCSSCCCCEEEE
T ss_pred ccEEEEEEcCCc--EEEEeCC-------------CeEEEEECCCCccccceeeecc------------cccCcEEEEEEE
Confidence 578899999999 5555533 38999999976532 2321 112346788999
Q ss_pred cCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe-ecccccCceee--ccCCceEEEEEeccccceEEE
Q 002194 408 SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISW--CDDSLALVYESWYKTRRTRTW 484 (954)
Q Consensus 408 pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~--spDg~~l~~~~~~~~~~~~l~ 484 (954)
|+.|+.. . .+.|.+|+. .+++...+. ++...+..++| |||++.|+.+.+. + . +||
T Consensus 236 --g~~LASa-------------~-~~tIkLWd~---~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ed-G-~-klw 293 (588)
T 2j04_A 236 --DYKVVLT-------------C-PGYVHKIDL---KNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKT-S-Y-KVL 293 (588)
T ss_dssp --TTEEEEE-------------C-SSEEEEEET---TTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSC-E-E-EEE
T ss_pred --CCEEEEE-------------e-CCeEEEEEC---CCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCC-C-C-EEE
Confidence 5555444 2 358999996 555553443 56667888999 9999887776433 2 2 688
Q ss_pred EEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEE
Q 002194 485 VISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (954)
Q Consensus 485 ~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 527 (954)
..+ . ++++|||..+++.
T Consensus 294 ~~d--~------------------------~~~spd~~l~a~~ 310 (588)
T 2j04_A 294 LED--E------------------------LHVTADNIIAPYL 310 (588)
T ss_dssp ESS--S------------------------EEEECCCSSHHHH
T ss_pred eec--c------------------------EEECCCceEEEEc
Confidence 765 1 5688999877764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-14 Score=177.50 Aligned_cols=262 Identities=11% Similarity=0.082 Sum_probs=175.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++||+...+ +.|.+|++.+ + .....+.. +..
T Consensus 15 ~v~~i~~sp~~~~la~~~~~---------------------------------g~v~iwd~~~-~--~~~~~~~~--~~~ 56 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYS---------------------------------GRVEIWNYET-Q--VEVRSIQV--TET 56 (814)
T ss_dssp CEEEEEECSSSSEEEEEETT---------------------------------SEEEEEETTT-T--EEEEEEEC--CSS
T ss_pred ceEEEEECCCCCEEEEEeCC---------------------------------CEEEEEECCC-C--ceEEEEec--CCC
Confidence 56789999999999998865 5799999854 2 23344443 334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..+.|||||++|++... ...|.+++..+++........... +..++|+|||+.|+...
T Consensus 57 ~v~~~~~s~~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~------- 116 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSD---------DFRIRVFNYNTGEKVVDFEAHPDY----IRSIAVHPTKPYVLSGS------- 116 (814)
T ss_dssp CEEEEEEEGGGTEEEEEET---------TSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSSSEEEEEE-------
T ss_pred cEEEEEEeCCCCEEEEEeC---------CCeEEEEECCCCcEEEEEecCCCC----EEEEEEeCCCCEEEEEc-------
Confidence 7899999999999998652 567888898887765443322222 77899999999988661
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ce-eEcCCC-ccccccccCC-CCc
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TV-KEIGPP-AVYTSLDPSP-DEK 344 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~-~~l~~~-~~~~~~~~Sp-DGk 344 (954)
....|.++++ ++ .. ..+... ..+..++|+| ||+
T Consensus 117 ------------------------------------------~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 154 (814)
T 3mkq_A 117 ------------------------------------------DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154 (814)
T ss_dssp ------------------------------------------TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE
T ss_pred ------------------------------------------CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC
Confidence 1234667777 44 32 333333 6788899999 888
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeecc--CCCCceEEEEecc
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRS--DKPSTLYWAETQD 421 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wsp--Dg~~i~~~~~~~~ 421 (954)
.|+..+.+ +.+.+||+.++.. ..+... ....+..+.|+| ||+.++..
T Consensus 155 ~l~~~~~d-------------g~v~vwd~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~l~~~----- 204 (814)
T 3mkq_A 155 TFASGCLD-------------RTVKVWSLGQSTPNFTLTTG------------QERGVNYVDYYPLPDKPYMITA----- 204 (814)
T ss_dssp EEEEEETT-------------SEEEEEETTCSSCSEEEECC------------CTTCCCEEEECCSTTCCEEEEE-----
T ss_pred EEEEEeCC-------------CeEEEEECCCCcceeEEecC------------CCCCEEEEEEEECCCCCEEEEE-----
Confidence 88887743 3899999975432 222221 113456789999 88866655
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecC
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 501 (954)
+..+.|.+|+. .++.....+..+...+..++|+|||+.|+..+.++ .|.++++.++ ........
T Consensus 205 --------~~dg~i~~~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~v~vwd~~~~--~~~~~~~~ 268 (814)
T 3mkq_A 205 --------SDDLTIKIWDY--QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG----TLKIWNSSTY--KVEKTLNV 268 (814)
T ss_dssp --------CTTSEEEEEET--TTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS----CEEEEETTTC--SEEEEECC
T ss_pred --------eCCCEEEEEEC--CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC----eEEEEECCCC--cEEEEeec
Confidence 34568999996 23333444555667788899999999888776443 2555666664 33333333
Q ss_pred CCCCccCCCCCCCeeeccCCcE
Q 002194 502 SSEDVYSDPGSPMMRRTSTGTY 523 (954)
Q Consensus 502 ~~~~~~~~~~~~~~~~spdG~~ 523 (954)
....+.. ++|+|+|+.
T Consensus 269 ~~~~v~~------~~~~~~~~~ 284 (814)
T 3mkq_A 269 GLERSWC------IATHPTGRK 284 (814)
T ss_dssp SSSSEEE------EEECTTCGG
T ss_pred CCCcEEE------EEEccCCCc
Confidence 3333333 788999974
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-14 Score=158.61 Aligned_cols=284 Identities=14% Similarity=0.123 Sum_probs=161.1
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..|++|.+.... ++.+.++.. .......++|||||++|+++...+ +.++...+|.++.++|+.+++.......
T Consensus 27 ~~i~~~~~d~~~--g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~---~~~~~v~~~~~~~~~g~~~~~~~~~~~~- 99 (361)
T 3scy_A 27 KGIYTFRFNEET--GESLPLSDA-EVANPSYLIPSADGKFVYSVNEFS---KDQAAVSAFAFDKEKGTLHLLNTQKTMG- 99 (361)
T ss_dssp CEEEEEEEETTT--CCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCS---STTCEEEEEEEETTTTEEEEEEEEECSS-
T ss_pred CCEEEEEEeCCC--CCEEEeecc-cCCCCceEEECCCCCEEEEEEccC---CCCCcEEEEEEeCCCCcEEEeeEeccCC-
Confidence 367888774322 555555433 334667789999999998876411 1234566788887777776665432111
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
.....+++ ||+.|+++.. ....+.++++
T Consensus 100 -~~p~~~~~--dg~~l~~~~~------------------------------------------------~~~~v~~~~~~ 128 (361)
T 3scy_A 100 -ADPCYLTT--NGKNIVTANY------------------------------------------------SGGSITVFPIG 128 (361)
T ss_dssp -SCEEEEEE--CSSEEEEEET------------------------------------------------TTTEEEEEEBC
T ss_pred -CCcEEEEE--CCCEEEEEEC------------------------------------------------CCCEEEEEEeC
Confidence 00223444 9998887611 1223555555
Q ss_pred -CCceeEcCC-----C----------ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce-------E
Q 002194 322 -DGTVKEIGP-----P----------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-------V 378 (954)
Q Consensus 322 -~G~~~~l~~-----~----------~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-------~ 378 (954)
+|....+.. + .....++|||||++|++..... ..+++|+++... .
T Consensus 129 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------------~~v~v~~~~~~~~~~~~~~l 196 (361)
T 3scy_A 129 QDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT------------DQIHKFNINPNANADNKEKF 196 (361)
T ss_dssp TTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT------------TEEEEEEECTTCCTTTCCCC
T ss_pred CCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC------------CEEEEEEEcCCCCcccccce
Confidence 333222210 0 1224589999999998876322 378888877322 2
Q ss_pred EEe-----ccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEee
Q 002194 379 REL-----CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK 453 (954)
Q Consensus 379 ~~l-----~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~ 453 (954)
... ...+ ...+++.++|+|||+.+++. . ...+.|.+|++ .+++.+.+..
T Consensus 197 ~~~~~~~~~~~~-----------~~~~~~~~~~spdg~~l~v~-~-----------~~~~~v~v~~~---~~g~~~~~~~ 250 (361)
T 3scy_A 197 LTKGTPEAFKVA-----------PGSGPRHLIFNSDGKFAYLI-N-----------EIGGTVIAFRY---ADGMLDEIQT 250 (361)
T ss_dssp EEEEEEEEEECC-----------TTCCEEEEEECTTSSEEEEE-E-----------TTTCEEEEEEE---ETTEEEEEEE
T ss_pred eecccccceecC-----------CCCCCeEEEEcCCCCEEEEE-c-----------CCCCeEEEEEe---cCCceEEeEE
Confidence 111 1110 11345679999999966554 1 12457888886 3444433322
Q ss_pred cc------cccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCC-CCCccCCCCCCCeeeccCCcEEEE
Q 002194 454 LD------LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS-SEDVYSDPGSPMMRRTSTGTYVIA 526 (954)
Q Consensus 454 ~~------~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~spdG~~l~~ 526 (954)
.. .....++|||||++|+++.........+|.++..++ ....+.... ...... ++|+|||++|+.
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g--~~~~~~~~~~g~~~~~------~~~spdg~~l~~ 322 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG--TLTKVGYQLTGIHPRN------FIITPNGKYLLV 322 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC--CEEEEEEEECSSCCCE------EEECTTSCEEEE
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC--cEEEeeEecCCCCCce------EEECCCCCEEEE
Confidence 11 123478999999998776544123467777776654 222222111 111111 789999999887
Q ss_pred EEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEe
Q 002194 527 KIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (954)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 568 (954)
.... .+.-.+|.+|.++|+.+.+.
T Consensus 323 ~~~~------------------~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 323 ACRD------------------TNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp EETT------------------TTEEEEEEECTTTCCEEECS
T ss_pred EECC------------------CCCEEEEEEECCCCcEeecc
Confidence 7621 12234666788888876653
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-15 Score=154.60 Aligned_cols=129 Identities=15% Similarity=0.141 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCc
Q 002194 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSP 822 (954)
Q Consensus 743 ~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 822 (954)
+...++...+. .+|++||+++|+|+||.+++.++.++|+.|+++|+++|..... ..+. .
T Consensus 117 i~~li~~~~~~-gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~~sG~lp~~-----------------~~~~---~ 175 (246)
T 4f21_A 117 VNKLIDSQVNQ-GIASENIILAGFSQGGIIATYTAITSQRKLGGIMALSTYLPAW-----------------DNFK---G 175 (246)
T ss_dssp HHHHHHHHHHC--CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEEESCCCTTH-----------------HHHS---T
T ss_pred HHHHHHHHHHc-CCChhcEEEEEeCchHHHHHHHHHhCccccccceehhhccCcc-----------------cccc---c
Confidence 33333433333 5899999999999999999999999999999999999853210 0000 0
Q ss_pred ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 823 FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 823 ~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
.......++|+|++||+.|.+|| ++.++++++.|+..|.++++..||++||.+. .+.++.+.+||++.|+
T Consensus 176 ~~~~~~~~~Pvl~~HG~~D~vVp--~~~~~~~~~~L~~~g~~v~~~~y~g~gH~i~-----~~~l~~~~~fL~k~l~ 245 (246)
T 4f21_A 176 KITSINKGLPILVCHGTDDQVLP--EVLGHDLSDKLKVSGFANEYKHYVGMQHSVC-----MEEIKDISNFIAKTFK 245 (246)
T ss_dssp TCCGGGTTCCEEEEEETTCSSSC--HHHHHHHHHHHHTTTCCEEEEEESSCCSSCC-----HHHHHHHHHHHHHHTT
T ss_pred cccccccCCchhhcccCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCccC-----HHHHHHHHHHHHHHhC
Confidence 00011235899999999999999 9999999999999999999999999999985 3456789999999874
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-15 Score=157.51 Aligned_cols=214 Identities=16% Similarity=0.230 Sum_probs=138.7
Q ss_pred EEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC
Q 002194 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (954)
+...+|.+++...+-|+ + .|.||++||.+... ..| ...+..|+++||.|++ .|.
T Consensus 4 ~~~~~g~~l~y~~~g~~------~--~~~vvllHG~~~~~-----------~~w----~~~~~~L~~~g~~vi~---~D~ 57 (276)
T 1zoi_A 4 VTTKDGVQIFYKDWGPR------D--APVIHFHHGWPLSA-----------DDW----DAQLLFFLAHGYRVVA---HDR 57 (276)
T ss_dssp EECTTSCEEEEEEESCT------T--SCEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEE---ECC
T ss_pred EECCCCcEEEEEecCCC------C--CCeEEEECCCCcch-----------hHH----HHHHHHHHhCCCEEEE---ecC
Confidence 45678988887766442 1 36799999964211 111 2345678889999999 677
Q ss_pred CCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCcccEEEEeccCCCCCC--
Q 002194 724 IGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTL-- 798 (954)
Q Consensus 724 ~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~~~~-- 798 (954)
+|+|.+... ........+|+.+.++.+ +.+++.++||||||.+++.+++++ |++++++|++++......
T Consensus 58 ~G~G~S~~~~~~~~~~~~~~d~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~ 131 (276)
T 1zoi_A 58 RGHGRSSQVWDGHDMDHYADDVAAVVAHL------GIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQT 131 (276)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCCCSCCBCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCCCcccccc
Confidence 788888543 223556678888887776 235899999999999999988876 899999999886421100
Q ss_pred --CCCCCc----------------------------c-c------cch----hhhc-----H-------HHHHhcCcccc
Q 002194 799 --TPFGFQ----------------------------N-E------DRT----LWEA-----T-------STYVEMSPFMS 825 (954)
Q Consensus 799 --~~~~~~----------------------------~-~------~~~----~~~~-----~-------~~~~~~sp~~~ 825 (954)
.+.... . . ... .|.. . ..+...+....
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (276)
T 1zoi_A 132 PGNPGGLPKSVFDGFQAQVASNRAQFYRDVPAGPFYGYNRPGVEASEGIIGNWWRQGMIGSAKAHYDGIVAFSQTDFTED 211 (276)
T ss_dssp SSCTTSBCHHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHH
T ss_pred ccccccccHHHHHHHHHHHHHhHHHHHHHhhhccccccccccccccHHHHHHHHhhhhhhhHHHHHHHHHHhcccchhhh
Confidence 000000 0 0 000 0000 0 00011122234
Q ss_pred cCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 826 ~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+.++++|+|+++|++|..+| +....+.+..+. .+.+++++|++||... .++...+.+.|.+||+
T Consensus 212 l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 275 (276)
T 1zoi_A 212 LKGIQQPVLVMHGDDDQIVP--YENSGVLSAKLL---PNGALKTYKGYPHGMP-TTHADVINADLLAFIR 275 (276)
T ss_dssp HHHCCSCEEEEEETTCSSSC--STTTHHHHHHHS---TTEEEEEETTCCTTHH-HHTHHHHHHHHHHHHT
T ss_pred ccccCCCEEEEEcCCCcccC--hHHHHHHHHhhC---CCceEEEcCCCCCchh-hhCHHHHHHHHHHHhc
Confidence 56789999999999999998 764444443332 2479999999999874 4567788888888874
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-14 Score=162.19 Aligned_cols=279 Identities=15% Similarity=0.148 Sum_probs=177.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||+.|+..+.+ +.|.+|++.+ + ...+.+.++ ..
T Consensus 110 ~V~~~~~~p~~~~l~s~s~D---------------------------------g~i~vwd~~~-~--~~~~~l~~h--~~ 151 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASED---------------------------------ATIKVWDYET-G--DFERTLKGH--TD 151 (410)
T ss_dssp CEEEEEECSSSSEEEEEESS---------------------------------SCEEEEETTT-C--CCCEEECCC--SS
T ss_pred cEEEEEEcCCCCEEEEEeCC---------------------------------CeEEEEECCC-C--cEEEEEecc--CC
Confidence 46678999999999988876 5799999854 2 223344433 24
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....|+|||+.|+... . ...|.++|+.+++........... +..+.|+|||+.|+...
T Consensus 152 ~V~~v~~~~~~~~l~sgs-------~--D~~i~iwd~~~~~~~~~~~~h~~~----V~~v~~~p~~~~l~s~s------- 211 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCS-------A--DMTIKLWDFQGFECIRTMHGHDHN----VSSVSIMPNGDHIVSAS------- 211 (410)
T ss_dssp CEEEEEECTTSSEEEEEE-------T--TSCCCEEETTSSCEEECCCCCSSC----EEEEEECSSSSEEEEEE-------
T ss_pred cEEEEEEcCCCCEEEEEe-------C--CCeEEEEeCCCCceeEEEcCCCCC----EEEEEEeCCCCEEEEEe-------
Confidence 688999999999888755 2 345666688777665443333322 77899999999888661
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~-~~~~~~~~SpDGk~l 346 (954)
....|.++|+ +|. ...+... ..+..+.|+|||+.|
T Consensus 212 ------------------------------------------~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l 249 (410)
T 1vyh_C 212 ------------------------------------------RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI 249 (410)
T ss_dssp ------------------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred ------------------------------------------CCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEE
Confidence 1234777788 664 3344444 667788999999999
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEE-------
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE------- 418 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~------- 418 (954)
+..+.+ +.+.+||+.+++.. .+..+. ..+..++|+|++........
T Consensus 250 ~s~s~D-------------~~v~vwd~~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~~~~~~~~~~~~~~ 303 (410)
T 1vyh_C 250 ASCSND-------------QTVRVWVVATKECKAELREHR-------------HVVECISWAPESSYSSISEATGSETKK 303 (410)
T ss_dssp EEEETT-------------SCEEEEETTTCCEEEEECCCS-------------SCEEEEEECCSCGGGGGGGCCSCC---
T ss_pred EEEcCC-------------CeEEEEECCCCceeeEecCCC-------------ceEEEEEEcCcccccchhhhccccccc
Confidence 888744 38999999865443 332221 23456788887532100000
Q ss_pred eccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002194 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (954)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 498 (954)
....+..-+..+..+.|.+|++ .++.....+..+...+..++|+|+|++|+..+.++ .|.++|..++ +....
T Consensus 304 ~~~~g~~l~sgs~D~~i~iwd~--~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~----~i~vwd~~~~--~~~~~ 375 (410)
T 1vyh_C 304 SGKPGPFLLSGSRDKTIKMWDV--STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK----TLRVWDYKNK--RCMKT 375 (410)
T ss_dssp ----CCEEEEEETTSEEEEEET--TTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT----EEEEECCTTS--CCCEE
T ss_pred cCCCCCEEEEEeCCCeEEEEEC--CCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCC----eEEEEECCCC--ceEEE
Confidence 0000000011134567999996 33333455566677788899999999998776543 3555566554 22333
Q ss_pred ecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
...+...+.. +.|+|+|.+|+...
T Consensus 376 ~~~h~~~v~~------l~~~~~~~~l~sgs 399 (410)
T 1vyh_C 376 LNAHEHFVTS------LDFHKTAPYVVTGS 399 (410)
T ss_dssp EECCSSCEEE------EEECSSSSCEEEEE
T ss_pred EcCCCCcEEE------EEEcCCCCEEEEEe
Confidence 3334444444 88999999988766
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-14 Score=157.90 Aligned_cols=267 Identities=11% Similarity=-0.023 Sum_probs=178.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCcccccc--------------ccceeeeeeecCCCCCCcceeeEeceEEEEccCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELAR--------------PEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGK 175 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~ 175 (954)
.+..++|||||+.|+... ++...++++.. ....+..+.+++++......+..+.|.+|++.. +.
T Consensus 53 ~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~ 130 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA-PT 130 (337)
T ss_dssp CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC-C-
T ss_pred ceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC-CC
Confidence 577899999999999887 44444443332 223345566777655444344446799999854 21
Q ss_pred CCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCC
Q 002194 176 LGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS 255 (954)
Q Consensus 176 ~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG 255 (954)
......+.. ....+..+.|+|||+.|+.... ...|+++|+.+++........... +..+.|+|||
T Consensus 131 ~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~---------dg~v~~~d~~~~~~~~~~~~~~~~----i~~~~~~~~~ 195 (337)
T 1gxr_A 131 PRIKAELTS--SAPACYALAISPDSKVCFSCCS---------DGNIAVWDLHNQTLVRQFQGHTDG----ASCIDISNDG 195 (337)
T ss_dssp -EEEEEEEC--SSSCEEEEEECTTSSEEEEEET---------TSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTS
T ss_pred cceeeeccc--CCCceEEEEECCCCCEEEEEeC---------CCcEEEEeCCCCceeeeeecccCc----eEEEEECCCC
Confidence 001222322 2236788999999999888652 457888898887765544333322 6789999999
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE-cCCCcc
Q 002194 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPPAV 333 (954)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~-l~~~~~ 333 (954)
+.|+... ....|.++|+ +++... +.....
T Consensus 196 ~~l~~~~-------------------------------------------------~dg~i~~~d~~~~~~~~~~~~~~~ 226 (337)
T 1gxr_A 196 TKLWTGG-------------------------------------------------LDNTVRSWDLREGRQLQQHDFTSQ 226 (337)
T ss_dssp SEEEEEE-------------------------------------------------TTSEEEEEETTTTEEEEEEECSSC
T ss_pred CEEEEEe-------------------------------------------------cCCcEEEEECCCCceEeeecCCCc
Confidence 9888761 1235778888 665433 333366
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i 413 (954)
+..++|+|||+.|++.+.+ +.+.+|++.+++...+..+. ..+..++|+|||+.+
T Consensus 227 v~~~~~s~~~~~l~~~~~~-------------~~i~~~~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l 280 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGMES-------------SNVEVLHVNKPDKYQLHLHE-------------SCVLSLKFAYCGKWF 280 (337)
T ss_dssp EEEEEECTTSSEEEEEETT-------------SCEEEEETTSSCEEEECCCS-------------SCEEEEEECTTSSEE
T ss_pred eEEEEECCCCCEEEEEcCC-------------CcEEEEECCCCCeEEEcCCc-------------cceeEEEECCCCCEE
Confidence 7889999999999988743 37999999977655444322 345689999999976
Q ss_pred eEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEE
Q 002194 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (954)
+.. +..+.|.+|++ ..++..........+..++|+|||+.|+....++. .++|.+
T Consensus 281 ~~~-------------~~dg~i~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~iw~~ 335 (337)
T 1gxr_A 281 VST-------------GKDNLLNAWRT---PYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK--ATVYEV 335 (337)
T ss_dssp EEE-------------ETTSEEEEEET---TTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSC--EEEEEE
T ss_pred EEe-------------cCCCcEEEEEC---CCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCe--EEEEEE
Confidence 655 33568999996 55555444556667788999999999888765432 566654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.1e-14 Score=161.23 Aligned_cols=258 Identities=10% Similarity=0.078 Sum_probs=164.7
Q ss_pred ceEEEEccCCCCCCceeeeec---C-CCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCC
Q 002194 164 GIGIHQLFPDGKLGQEIEIQG---F-PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD 239 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~---~-~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 239 (954)
.|++|++.+ ++..+... + .....+..++|+|||+.++... ....|+++|+++++.........
T Consensus 145 ~i~~~d~~~----g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~---------~d~~v~~~d~~~~~~~~~~~~~~ 211 (433)
T 3bws_A 145 GMDVLDINS----GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQM---------QANAVHVFDLKTLAYKATVDLTG 211 (433)
T ss_dssp SEEEEETTT----CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEG---------GGTEEEEEETTTCCEEEEEECSS
T ss_pred eEEEEECCC----CeEeeecCcccccccCCceeEEEEcCCCEEEEEEC---------CCCEEEEEECCCceEEEEEcCCC
Confidence 689999854 33333211 1 1122577789999997655532 25689999998877654433222
Q ss_pred ccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEE
Q 002194 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (954)
Q Consensus 240 ~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~ 319 (954)
.. +..++|+|||+.++++.. ....|+++
T Consensus 212 ~~----~~~~~~~~~~~~l~~~~~------------------------------------------------~~~~i~~~ 239 (433)
T 3bws_A 212 KW----SKILLYDPIRDLVYCSNW------------------------------------------------ISEDISVI 239 (433)
T ss_dssp SS----EEEEEEETTTTEEEEEET------------------------------------------------TTTEEEEE
T ss_pred CC----eeEEEEcCCCCEEEEEec------------------------------------------------CCCcEEEE
Confidence 22 568899999998887610 12358889
Q ss_pred Ee-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCcccccc
Q 002194 320 SL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV 397 (954)
Q Consensus 320 ~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~ 397 (954)
|+ +++....... ..+..++|+|||++|++.......-. ..++.|++||+.+++.......+
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-----~~dg~i~~~d~~~~~~~~~~~~~------------ 302 (433)
T 3bws_A 240 DRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQE-----SGGGRLGIYSMDKEKLIDTIGPP------------ 302 (433)
T ss_dssp ETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTC-----SCCEEEEEEETTTTEEEEEEEEE------------
T ss_pred ECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccc-----cCCCeEEEEECCCCcEEeeccCC------------
Confidence 98 7765444433 66788999999999998874331000 01348999999876554333211
Q ss_pred ccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEecc
Q 002194 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 398 ~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
..+..++|+|||+.+++.. ...+.|++|++ .+++..........+..++|+|||+.|+......
T Consensus 303 -~~~~~~~~~~~g~~l~~~~------------~~~~~v~v~d~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 366 (433)
T 3bws_A 303 -GNKRHIVSGNTENKIYVSD------------MCCSKIEVYDL---KEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGP 366 (433)
T ss_dssp -ECEEEEEECSSTTEEEEEE------------TTTTEEEEEET---TTTEEEEEEECSSSEEEEEECTTSSEEEEEECCC
T ss_pred -CCcceEEECCCCCEEEEEe------------cCCCEEEEEEC---CCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCC
Confidence 2345789999998766541 23458999996 4444444444555677899999999988876543
Q ss_pred cc-----------ceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 478 TR-----------RTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 478 ~~-----------~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+. ...|+++|+.++ +........ ..+.. ++|+|||++|+...
T Consensus 367 ~~~~~~~~~~g~~dg~v~~~d~~~~--~~~~~~~~~-~~~~~------~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 367 NHPTEGYLKKGLVLGKVYVIDTTTD--TVKEFWEAG-NQPTG------LDVSPDNRYLVISD 419 (433)
T ss_dssp CCTTTCTTSCCSSCCEEEEEETTTT--EEEEEEECS-SSEEE------EEECTTSCEEEEEE
T ss_pred CccccccccccccceEEEEEECCCC--cEEEEecCC-CCCce------EEEcCCCCEEEEEE
Confidence 21 137999998875 333333221 12222 78999999988765
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-14 Score=166.72 Aligned_cols=223 Identities=12% Similarity=0.048 Sum_probs=148.7
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
+...+.+.+.+|..++.... + ..|+||++||++.... .| ...+..|+++||.|+.
T Consensus 2 p~i~~~~~~~dG~~l~y~~~---G-------~gp~VV~lHG~~~~~~-----------~~----~~l~~~La~~Gy~Vi~ 56 (456)
T 3vdx_A 2 PFITVGQENSTSIDLYYEDH---G-------TGVPVVLIHGFPLSGH-----------SW----ERQSAALLDAGYRVIT 56 (456)
T ss_dssp CEEEEEEETTEEEEEEEEEE---S-------SSEEEEEECCTTCCGG-----------GG----TTHHHHHHHHTEEEEE
T ss_pred CeEeecccccCCeEEEEEEe---C-------CCCEEEEECCCCCcHH-----------HH----HHHHHHHHHCCcEEEE
Confidence 34556667788888875443 1 2588999999742211 12 1356678899999999
Q ss_pred cCCCCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCcccEEEEeccCC
Q 002194 718 GPTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAY 794 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~ 794 (954)
.+.+|+|.+... ........+|+.++++++ +.++++++|||+||.+++.+++.+ |++++++|++++..
T Consensus 57 ---~D~rG~G~S~~~~~~~s~~~~a~dl~~~l~~l------~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~ 127 (456)
T 3vdx_A 57 ---YDRRGFGQSSQPTTGYDYDTFAADLNTVLETL------DLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLE 127 (456)
T ss_dssp ---ECCTTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCC
T ss_pred ---ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCcc
Confidence 566678877543 234566788888888876 346899999999999999988887 89999999999865
Q ss_pred CCCCCCCCCcccc--chh--------------h------------------hcHHHHH---------------------h
Q 002194 795 NRTLTPFGFQNED--RTL--------------W------------------EATSTYV---------------------E 819 (954)
Q Consensus 795 ~~~~~~~~~~~~~--~~~--------------~------------------~~~~~~~---------------------~ 819 (954)
............. ... + .....+. .
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (456)
T 3vdx_A 128 PFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWY 207 (456)
T ss_dssp SCCBCCSSCCSCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTTTTSBTTTBCHHHHHHHHHHHHTSCTTHHHHGGGGTT
T ss_pred cccccccccccccchHHHHHHHHHhhhccchHHHHHHHHHHhcccccccccccHHHHHHHhhhccccchhhhhhhhhhhh
Confidence 4221110000000 000 0 0000000 1
Q ss_pred cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 820 ~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
.+....+.++++|+|+++|++|..+| +....+.+.... .+++++++++++|.+. .+....+.+.+.+||++++.
T Consensus 208 ~d~~~~l~~i~~PvLiI~G~~D~~vp--~~~~~~~l~~~~---~~~~~~~i~gagH~~~-~e~p~~v~~~I~~FL~~~l~ 281 (456)
T 3vdx_A 208 TDFRADIPRIDVPALILHGTGDRTLP--IENTARVFHKAL---PSAEYVEVEGAPHGLL-WTHAEEVNTALLAFLAKALE 281 (456)
T ss_dssp CCCTTTSTTCCSCCEEEEETTCSSSC--GGGTHHHHHHHC---TTSEEEEETTCCSCTT-TTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhCCCCEEEEEeCCCCCcC--HHHHHHHHHHHC---CCceEEEeCCCCCcch-hhCHHHHHHHHHHHHHHhhc
Confidence 12234467789999999999999998 774433333321 2368999999999875 46778899999999998875
Q ss_pred c
Q 002194 900 S 900 (954)
Q Consensus 900 ~ 900 (954)
.
T Consensus 282 ~ 282 (456)
T 3vdx_A 282 A 282 (456)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.6e-14 Score=151.90 Aligned_cols=290 Identities=11% Similarity=-0.019 Sum_probs=168.9
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCC-cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
..|++|++.+ ++........... ....++|||||++|+++.. ....|+++|+.+++.......+...
T Consensus 11 ~~v~~~d~~~----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~--------~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 11 DKLVVIDTEK----MAVDKVITIADAGPTPMVPMVAPGGRIAYATVN--------KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp TEEEEEETTT----TEEEEEEECTTCTTCCCCEEECTTSSEEEEEET--------TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred CeEEEEECCC----CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC--------CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 4789999853 3332221122211 3678999999999887642 2468999999988765433322200
Q ss_pred -ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEE
Q 002194 242 -LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (954)
Q Consensus 242 -~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~ 320 (954)
....+..++|+|||+.|+++....... ..... .....|++++
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~-------------------------------~~~~~------~~~~~i~v~d 121 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLE-------------------------------LTHFE------VQPTRVALYD 121 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEEC-------------------------------SSCEE------ECCCEEEEEE
T ss_pred cccccccceEECCCCCEEEEEecccccc-------------------------------ccccc------ccCceEEEEE
Confidence 000155899999999988772100000 00000 0125688999
Q ss_pred e-CCcee-EcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccc
Q 002194 321 L-DGTVK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVR 398 (954)
Q Consensus 321 ~-~G~~~-~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~ 398 (954)
+ +++.. .+..+.....++|||||++|++.+ +.+++||+++++.........
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---------------~~i~~~d~~~~~~~~~~~~~~------------ 174 (337)
T 1pby_B 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLG---------------RDLHVMDPEAGTLVEDKPIQS------------ 174 (337)
T ss_dssp TTTTEEEEEEECCSSCCCEEECTTSSCEEEES---------------SSEEEEETTTTEEEEEECSTT------------
T ss_pred CCCCcEEEEEeCCCCcceeEECCCCCEEEEeC---------------CeEEEEECCCCcEeeeeeccc------------
Confidence 8 66543 333345567889999999998872 179999998776543322110
Q ss_pred cCccceeeccCCCCceEEE------------EeccCCCccccccCCCeEEEEecCCCCCCCceEEe--ecccccCceeec
Q 002194 399 KGMRSINWRSDKPSTLYWA------------ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWC 464 (954)
Q Consensus 399 ~g~~~~~wspDg~~i~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~--~~~~~~~~~~~s 464 (954)
....+.|+|||+.+++.. ....++.... ......|+++++ .+++...+. ........++|+
T Consensus 175 -~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~d~---~~~~~~~~~~~~~~~~~~~~~~s 249 (337)
T 1pby_B 175 -WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP-TAYRTGLLTMDL---ETGEMAMREVRIMDVFYFSTAVN 249 (337)
T ss_dssp -TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG-GGEEEEEEEEET---TTCCEEEEEEEECSSCEEEEEEC
T ss_pred -cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccc-cccccceEEEeC---CCCCceEeecCCCCCceeeEEEC
Confidence 012347999999765431 0000000000 011126788886 555554332 223344568999
Q ss_pred cCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCC
Q 002194 465 DDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNG 544 (954)
Q Consensus 465 pDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~ 544 (954)
|||++|++. + ..|+++|+.++ +........ ..... ++|+|||++|+....
T Consensus 250 ~dg~~l~~~---~---~~v~~~d~~~~--~~~~~~~~~-~~~~~------~~~s~dg~~l~~~~~--------------- 299 (337)
T 1pby_B 250 PAKTRAFGA---Y---NVLESFDLEKN--ASIKRVPLP-HSYYS------VNVSTDGSTVWLGGA--------------- 299 (337)
T ss_dssp TTSSEEEEE---E---SEEEEEETTTT--EEEEEEECS-SCCCE------EEECTTSCEEEEESB---------------
T ss_pred CCCCEEEEe---C---CeEEEEECCCC--cCcceecCC-Cceee------EEECCCCCEEEEEcC---------------
Confidence 999998877 1 46888998875 222222211 11122 789999998876531
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEec
Q 002194 545 ATPEGNIPFLDLFDINTGSKERIWE 569 (954)
Q Consensus 545 ~~~~~~~~~l~~~d~~~g~~~~l~~ 569 (954)
...|++||+++++......
T Consensus 300 ------~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 300 ------LGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp ------SSEEEEEETTTCCEEEEEE
T ss_pred ------CCcEEEEECcCCcEEEEEE
Confidence 2359999999887655443
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.4e-14 Score=182.80 Aligned_cols=278 Identities=12% Similarity=0.062 Sum_probs=177.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++||..+.+ +.|.+|++.+ + .....+.+ +..
T Consensus 617 ~v~~~~~s~~~~~l~s~~~d---------------------------------~~i~vw~~~~-~--~~~~~~~~--h~~ 658 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCGAD---------------------------------KTLQVFKAET-G--EKLLDIKA--HED 658 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SCEEEEETTT-C--CEEEEECC--CSS
T ss_pred cEEEEEECCCCCEEEEEeCC---------------------------------CeEEEEECCC-C--CEEEEecc--CCC
Confidence 45678999999999988775 5799999854 2 22334433 334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCe--EEEEEecCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST--LLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~--~l~~~~~~~~~ 267 (954)
.+..++|||||+.|+.... ...|.++|+.+++........... +..+.|+|+++ .++..
T Consensus 659 ~v~~~~~s~~~~~l~s~~~---------d~~v~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~sg------ 719 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCSA---------DKKVKIWDSATGKLVHTYDEHSEQ----VNCCHFTNKSNHLLLATG------ 719 (1249)
T ss_dssp CEEEEEECTTSSEEEEEET---------TSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSSSCCEEEEE------
T ss_pred CEEEEEEecCCCEEEEEeC---------CCeEEEEECCCCceEEEEcCCCCc----EEEEEEecCCCceEEEEE------
Confidence 7889999999999988652 457888899888765544333322 67899999654 44433
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-ccccccccCCCCc
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEK 344 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~-~~~~~~~~SpDGk 344 (954)
+ ....|.++|+ +++ ...+... ..+..++|+|||+
T Consensus 720 ---------------~----------------------------~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~ 756 (1249)
T 3sfz_A 720 ---------------S----------------------------NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE 756 (1249)
T ss_dssp ---------------E----------------------------TTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT
T ss_pred ---------------e----------------------------CCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC
Confidence 0 1234777788 664 3344444 7788999999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
+|+..+.+ +.+.+||+..+.. ..+...................+..++|+|||+.++..
T Consensus 757 ~l~s~s~d-------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~------- 816 (1249)
T 3sfz_A 757 LLASCSAD-------------GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA------- 816 (1249)
T ss_dssp EEEEEESS-------------SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE-------
T ss_pred EEEEEECC-------------CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE-------
Confidence 99988744 3899999986543 33322111100000000112245678999999977765
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEe-ecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCC
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 502 (954)
..+.+++|++ .++.....+. .+...+..++|+|+|+.++....+.. +.+++..++ ........+
T Consensus 817 -------~~~~v~~~d~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~----v~vwd~~~~--~~~~~~~~h 881 (1249)
T 3sfz_A 817 -------AKNKVLLFDI--HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC----VELWNIDSR--LKVADCRGH 881 (1249)
T ss_dssp -------ETTEEEEEET--TTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSC----EEEEETTTT--EEEEEECCC
T ss_pred -------cCCcEEEEEe--cCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCe----EEEEEcCCC--ceeeecCCC
Confidence 1357888986 3333333332 45667888999999999888755432 455555553 223333334
Q ss_pred CCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 503 SEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
...+.. +.|+|||++++...
T Consensus 882 ~~~v~~------v~~spdg~~l~s~s 901 (1249)
T 3sfz_A 882 LSWVHG------VMFSPDGSSFLTAS 901 (1249)
T ss_dssp SSCEEE------EEECTTSSEEEEEE
T ss_pred ccceEE------EEECCCCCEEEEEe
Confidence 333433 78899998887765
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.7e-15 Score=159.19 Aligned_cols=234 Identities=11% Similarity=0.092 Sum_probs=161.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|+|++..++..+.+ ..|.+|++.. + ...+.+.. ...
T Consensus 82 ~v~~~~~~~~~~~l~s~s~D---------------------------------~~i~lWd~~~-~--~~~~~~~~--~~~ 123 (321)
T 3ow8_A 82 GVVSVDISHTLPIAASSSLD---------------------------------AHIRLWDLEN-G--KQIKSIDA--GPV 123 (321)
T ss_dssp CEEEEEECSSSSEEEEEETT---------------------------------SEEEEEETTT-T--EEEEEEEC--CTT
T ss_pred CEEEEEECCCCCEEEEEeCC---------------------------------CcEEEEECCC-C--CEEEEEeC--CCc
Confidence 35578899999999888775 5899999854 2 12233332 223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+...+|||||+.|+... ....|.++++++++........... +..++|+|||+.|+...
T Consensus 124 ~~~~~~~spdg~~l~~g~---------~dg~v~i~~~~~~~~~~~~~~~~~~----v~~~~~spdg~~lasg~------- 183 (321)
T 3ow8_A 124 DAWTLAFSPDSQYLATGT---------HVGKVNIFGVESGKKEYSLDTRGKF----ILSIAYSPDGKYLASGA------- 183 (321)
T ss_dssp CCCCEEECTTSSEEEEEC---------TTSEEEEEETTTCSEEEEEECSSSC----EEEEEECTTSSEEEEEE-------
T ss_pred cEEEEEECCCCCEEEEEc---------CCCcEEEEEcCCCceeEEecCCCce----EEEEEECCCCCEEEEEc-------
Confidence 577899999999998854 3567888888877654433333222 66899999999998761
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~-~~~~~~~~SpDGk~l 346 (954)
....|.++|+ +++. ..+... ..+..++|||||++|
T Consensus 184 ------------------------------------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l 221 (321)
T 3ow8_A 184 ------------------------------------------IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLL 221 (321)
T ss_dssp ------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEE
T ss_pred ------------------------------------------CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEE
Confidence 1234777888 7754 344444 678899999999999
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
+..+.+ +.|.+||+..+.. ..+..+. ..+..++|+|||+.++..
T Consensus 222 ~s~s~d-------------g~i~iwd~~~~~~~~~~~~h~-------------~~v~~~~~sp~~~~l~s~--------- 266 (321)
T 3ow8_A 222 VTASDD-------------GYIKIYDVQHANLAGTLSGHA-------------SWVLNVAFCPDDTHFVSS--------- 266 (321)
T ss_dssp EEECTT-------------SCEEEEETTTCCEEEEECCCS-------------SCEEEEEECTTSSEEEEE---------
T ss_pred EEEcCC-------------CeEEEEECCCcceeEEEcCCC-------------CceEEEEECCCCCEEEEE---------
Confidence 887743 3899999985543 3333321 345679999999976654
Q ss_pred cccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEE
Q 002194 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (954)
+..+.|.+|++ .++.....+..+...+..++|+|||+.|+..+.++. .+||..
T Consensus 267 ----s~D~~v~iwd~--~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~--i~vwd~ 319 (321)
T 3ow8_A 267 ----SSDKSVKVWDV--GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQE--IHIYDC 319 (321)
T ss_dssp ----ETTSCEEEEET--TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCC--EEEEEC
T ss_pred ----eCCCcEEEEeC--CCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCe--EEEEeC
Confidence 34557899996 233333445566677888999999999987765543 666653
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-15 Score=158.25 Aligned_cols=235 Identities=13% Similarity=0.098 Sum_probs=147.9
Q ss_pred ceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 638 QKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 638 ~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
+.+.+++.+. .|.++..+ +|+++ + |+||++||++.. .....|.... .....++++||+|+
T Consensus 5 ~~~~~~~~s~~~~~~~~v~--~~p~~------~-~~v~llHG~~~~---------~~~~~w~~~~-~~~~~l~~~~~~vv 65 (280)
T 1dqz_A 5 PVEYLQVPSASMGRDIKVQ--FQGGG------P-HAVYLLDGLRAQ---------DDYNGWDINT-PAFEEYYQSGLSVI 65 (280)
T ss_dssp CEEEEEEEETTTTEEEEEE--EECCS------S-SEEEECCCTTCC---------SSSCHHHHHS-CHHHHHTTSSSEEE
T ss_pred eEEEEEEECcccCceeEEE--EcCCC------C-CEEEEECCCCCC---------CCcccccccC-cHHHHHhcCCeEEE
Confidence 4566777655 56677655 45443 1 489999996310 0001111000 12345667899999
Q ss_pred EcCCCCCCCCCCccc---------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEE
Q 002194 717 GGPTTPIIGEGDEEA---------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~---------~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (954)
.++..+..++..... ...+.....+|+... +.++..+++++++|+|+||||++|+.++.++|++|+++
T Consensus 66 ~pd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~---i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~ 142 (280)
T 1dqz_A 66 MPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAW---LQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYA 142 (280)
T ss_dssp EECCCTTCTTSBCSSSCTTTTCCSCCBHHHHHHTHHHHH---HHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEE
T ss_pred EECCCCCccccCCCCCCccccccccccHHHHHHHHHHHH---HHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEE
Confidence 977654333321100 112222223444444 44433467789999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCC-Cc-----c----ccchhhhc--HHHHHhcCcccccCCC---CCCEEEEEeCCCC----------
Q 002194 788 IARSGAYNRTLTPFG-FQ-----N----EDRTLWEA--TSTYVEMSPFMSANKL---KKPILLVHGEEDN---------- 842 (954)
Q Consensus 788 v~~~~~~~~~~~~~~-~~-----~----~~~~~~~~--~~~~~~~sp~~~~~~~---~~P~Lii~G~~D~---------- 842 (954)
|+++|.++....... +. . .....|.. ...+...+|...+.++ .+|+++.||+.|.
T Consensus 143 v~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~l~~~~~~~~l~~G~~D~~~~~~~~~~~ 222 (280)
T 1dqz_A 143 ASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPA 222 (280)
T ss_dssp EEESCCCCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHH
T ss_pred EEecCcccccCcchhhhHHHHhhhccCcCHHHhcCCCCchhhhhcCHHHHHHHHHhcCCeEEEEeCCCCcccccccccch
Confidence 999998764321000 00 0 00011111 1345666777666554 5799999999997
Q ss_pred ----CCCCchHHHHHHHHHHHhCC-CcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 843 ----NSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 843 ----~v~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
.++ ..++++++++|+..| +++++.++++++|.+. .....+...+.||.+.|+
T Consensus 223 ~~~e~~~--~~~~~~~~~~L~~~g~~~~~~~~~~~g~H~~~---~w~~~l~~~l~~l~~~l~ 279 (280)
T 1dqz_A 223 KFLEGLT--LRTNQTFRDTYAADGGRNGVFNFPPNGTHSWP---YWNEQLVAMKADIQHVLN 279 (280)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHH
T ss_pred hhHHHHH--HHHHHHHHHHHHhCCCCceEEEecCCCccChH---HHHHHHHHHHHHHHHHhC
Confidence 455 789999999999999 9999999988899863 234455677788877663
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.1e-16 Score=172.97 Aligned_cols=234 Identities=13% Similarity=0.110 Sum_probs=153.9
Q ss_pred EEcCCCeEEEEEEEcCCCC-CCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH----HCCc---EE
Q 002194 644 YQRKDGVQLSATLYLPPGY-DPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL----ARGF---AI 715 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~-~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la----~~G~---~V 715 (954)
+...||.++.+..+.|.+- .+...++.|+||++||.+.... .|. ..+..|+ ..|| .|
T Consensus 25 ~~~~dg~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~~~-----------~~~----~~~~~L~~~~~~~G~~~~~v 89 (398)
T 2y6u_A 25 LCATDRLELTYDVYTSAERQRRSRTATRLNLVFLHGSGMSKV-----------VWE----YYLPRLVAADAEGNYAIDKV 89 (398)
T ss_dssp SSTTCCCEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCCGG-----------GGG----GGGGGSCCCBTTTTEEEEEE
T ss_pred ccCCCceEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCcHH-----------HHH----HHHHHHHHhhhhcCcceeEE
Confidence 4567999999999988641 0111234689999999743221 111 2233455 3489 99
Q ss_pred EEcCCCCCCCCCCcccc-------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEE
Q 002194 716 LGGPTTPIIGEGDEEAN-------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (954)
Q Consensus 716 ~~~~~~~~~G~G~~~~~-------~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (954)
++ .+..|+|.+... ........+|+.++++.+.....+++.++.++||||||.+++.++.++|++++++|
T Consensus 90 i~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv 166 (398)
T 2y6u_A 90 LL---IDQVNHGDSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLI 166 (398)
T ss_dssp EE---ECCTTSHHHHHHTTTTBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEE
T ss_pred EE---EcCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEE
Confidence 99 666788877542 12345667777777776532212444569999999999999999999999999999
Q ss_pred EeccCCCCCC--------CCCC---Ccc-----------c---c----------chhhh--c---HHHHHh---------
Q 002194 789 ARSGAYNRTL--------TPFG---FQN-----------E---D----------RTLWE--A---TSTYVE--------- 819 (954)
Q Consensus 789 ~~~~~~~~~~--------~~~~---~~~-----------~---~----------~~~~~--~---~~~~~~--------- 819 (954)
+++|...... .... ... . . ...+. . .+.+..
T Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (398)
T 2y6u_A 167 LIEPVVITRKAIGAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGD 246 (398)
T ss_dssp EESCCCSCCCCCSCCCTTCCTTCCCCCHHHHHHHHHTCCCEESSHHHHHHHHHHTSTTTTSCHHHHHHHHHHHEEC----
T ss_pred EeccccccccccccccccccccccccchhhHHHhhhhccccCCCHHHHHHHhhcCcccccCCHHHHHHHHHhcCcccccc
Confidence 9998755311 0000 000 0 0 00000 0 001100
Q ss_pred ---------------------------cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC
Q 002194 820 ---------------------------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (954)
Q Consensus 820 ---------------------------~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 872 (954)
.+....+.++++|+|++||++|..+| +..++++++.+. .++++++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~~~--~~~~~~l~~~~~----~~~~~~~~~ 320 (398)
T 2y6u_A 247 DEDGGPVRTKMEQAQNLLCYMNMQTFAPFLISNVKFVRKRTIHIVGARSNWCP--PQNQLFLQKTLQ----NYHLDVIPG 320 (398)
T ss_dssp ----CCEEESSCHHHHHHTTSCGGGTHHHHHHHGGGCCSEEEEEEETTCCSSC--HHHHHHHHHHCS----SEEEEEETT
T ss_pred ccCCCceEecCCchhhhhhhcccccchHHHHHhccccCCCEEEEEcCCCCCCC--HHHHHHHHHhCC----CceEEEeCC
Confidence 01123456789999999999999998 888887777653 479999999
Q ss_pred CCCcCCCcccHHHHHHHHHHHHHHhcccCC
Q 002194 873 ESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 873 ~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
+||... .+....+.+.|.+||.+++...+
T Consensus 321 ~gH~~~-~e~p~~~~~~i~~fl~~~~~~~~ 349 (398)
T 2y6u_A 321 GSHLVN-VEAPDLVIERINHHIHEFVLTSP 349 (398)
T ss_dssp CCTTHH-HHSHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccch-hcCHHHHHHHHHHHHHHHHHhHH
Confidence 999864 45677889999999999886543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-14 Score=156.63 Aligned_cols=317 Identities=9% Similarity=0.032 Sum_probs=191.2
Q ss_pred eeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEE
Q 002194 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (954)
Q Consensus 179 ~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l 258 (954)
...+.++ ...+..++|||||+.|+.... ...|.++++.+++........... +..++|+|||+.|
T Consensus 25 ~~~l~~h--~~~v~~~~~s~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l 89 (369)
T 3zwl_B 25 AIKLTGH--ERPLTQVKYNKEGDLLFSCSK---------DSSASVWYSLNGERLGTLDGHTGT----IWSIDVDCFTKYC 89 (369)
T ss_dssp EEEEECC--SSCEEEEEECTTSCEEEEEES---------SSCEEEEETTTCCEEEEECCCSSC----EEEEEECTTSSEE
T ss_pred cEEEEEe--eceEEEEEEcCCCCEEEEEeC---------CCEEEEEeCCCchhhhhhhhcCCc----EEEEEEcCCCCEE
Confidence 3445443 346899999999999888652 457888888887765544333322 6789999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee-EcCCCccccc
Q 002194 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPPAVYTS 336 (954)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-~l~~~~~~~~ 336 (954)
+... ....|.++++ +++.. .+.....+..
T Consensus 90 ~s~~-------------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~v~~ 120 (369)
T 3zwl_B 90 VTGS-------------------------------------------------ADYSIKLWDVSNGQCVATWKSPVPVKR 120 (369)
T ss_dssp EEEE-------------------------------------------------TTTEEEEEETTTCCEEEEEECSSCEEE
T ss_pred EEEe-------------------------------------------------CCCeEEEEECCCCcEEEEeecCCCeEE
Confidence 8761 1235778888 66543 3333377888
Q ss_pred cccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccc--cCccceeeccCCCCc
Q 002194 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVR--KGMRSINWRSDKPST 413 (954)
Q Consensus 337 ~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~--~g~~~~~wspDg~~i 413 (954)
+.|+|||+.|+....... ...+.+.+|++..... ..+....... ........ ..+..++|+|||+.+
T Consensus 121 ~~~~~~~~~l~~~~~~~~--------~~~g~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l 190 (369)
T 3zwl_B 121 VEFSPCGNYFLAILDNVM--------KNPGSINIYEIERDSATHELTKVSEEP--IHKIITHEGLDAATVAGWSTKGKYI 190 (369)
T ss_dssp EEECTTSSEEEEEECCBT--------TBCCEEEEEEEEECTTTCCEEEECSSC--SEEEECCTTCCCEEEEEECGGGCEE
T ss_pred EEEccCCCEEEEecCCcc--------CCCCEEEEEEecCCccceeecccccce--eeeccCCcCccceeEEEEcCCCCEE
Confidence 999999999998874310 1124889999874321 1111100000 00000111 145678999999977
Q ss_pred eEEEEeccCCCccccccCCCeEEEEecCCCC-CCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCC
Q 002194 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ-GEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKD 492 (954)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~ 492 (954)
+.. +..+.|.+|++ .. +.....+..+...+..++|+|||+.|+....++ .|+++|+.++
T Consensus 191 ~~~-------------~~dg~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~v~d~~~~- 250 (369)
T 3zwl_B 191 IAG-------------HKDGKISKYDV--SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDT----NSFLVDVSTL- 250 (369)
T ss_dssp EEE-------------ETTSEEEEEET--TTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTC-
T ss_pred EEE-------------cCCCEEEEEEC--CCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCc----eEEEEECCCC-
Confidence 665 33568999996 22 222344455667788899999999998875443 4777777765
Q ss_pred CCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCc
Q 002194 493 VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (954)
Q Consensus 493 ~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 572 (954)
+....... ...+.. +.|+|+|++++...... ...++.... ......+++||+.+++.........
T Consensus 251 -~~~~~~~~-~~~~~~------~~~~~~~~~l~~~~~~~---~~~~~~~~~----~~~~~~i~~~d~~~~~~~~~~~~~~ 315 (369)
T 3zwl_B 251 -QVLKKYET-DCPLNT------AVITPLKEFIILGGGQE---AKDVTTTSA----NEGKFEARFYHKIFEEEIGRVQGHF 315 (369)
T ss_dssp -CEEEEEEC-SSCEEE------EEECSSSSEEEEEECCC--------------------CEEEEEETTTCCEEEEEECCS
T ss_pred -ceeeeecC-CCCcee------EEecCCCceEEEeecCC---CceEEEEec----CCCcceeEEEecCCCcchhheeccc
Confidence 23333321 122222 78999999999887321 112221111 1123469999999887765554332
Q ss_pred ccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002194 573 EKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (954)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g 619 (954)
. .+. ..+|+||++.++.... ...+.+|++.++
T Consensus 316 ~----~v~-------~~~~s~~~~~l~s~~~----dg~v~iw~~~~~ 347 (369)
T 3zwl_B 316 G----PLN-------TVAISPQGTSYASGGE----DGFIRLHHFEKS 347 (369)
T ss_dssp S----CEE-------EEEECTTSSEEEEEET----TSEEEEEEECHH
T ss_pred C----cEE-------EEEECCCCCEEEEEcC----CCeEEEEECccc
Confidence 1 122 2468999987765433 356888887654
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.64 E-value=8.4e-15 Score=155.50 Aligned_cols=212 Identities=16% Similarity=0.184 Sum_probs=135.9
Q ss_pred EEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC
Q 002194 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (954)
+++.+|.+++...+- + .|.||++||.+... ..| ...+..|+++||.|++ .+.
T Consensus 3 ~~~~~g~~l~y~~~g--------~--~~~vvllHG~~~~~-----------~~~----~~~~~~L~~~g~~vi~---~D~ 54 (273)
T 1a8s_A 3 FTTRDGTQIYYKDWG--------S--GQPIVFSHGWPLNA-----------DSW----ESQMIFLAAQGYRVIA---HDR 54 (273)
T ss_dssp EECTTSCEEEEEEES--------C--SSEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEE---ECC
T ss_pred EecCCCcEEEEEEcC--------C--CCEEEEECCCCCcH-----------HHH----hhHHhhHhhCCcEEEE---ECC
Confidence 566788888755441 1 36799999964211 111 2345678889999999 666
Q ss_pred CCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCcccEEEEeccCCCCCC--
Q 002194 724 IGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTL-- 798 (954)
Q Consensus 724 ~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~~~~-- 798 (954)
+|+|.+... ........+|+.++++.+ +.+++.++||||||.+++.+++++ |++++++|++++......
T Consensus 55 ~G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~ 128 (273)
T 1a8s_A 55 RGHGRSSQPWSGNDMDTYADDLAQLIEHL------DLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKT 128 (273)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEcccCcccccC
Confidence 788887543 223456677777777664 346899999999999999877765 899999999886321100
Q ss_pred --CCCCCccc----------------------------c-------ch----hhhc------------HHHHHhcCcccc
Q 002194 799 --TPFGFQNE----------------------------D-------RT----LWEA------------TSTYVEMSPFMS 825 (954)
Q Consensus 799 --~~~~~~~~----------------------------~-------~~----~~~~------------~~~~~~~sp~~~ 825 (954)
........ . .. .|.. ...+...+....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (273)
T 1a8s_A 129 EANPGGLPMEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTED 208 (273)
T ss_dssp SSCTTSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHH
T ss_pred ccccccCcHHHHHHHHHHhHhhHHHHHHHhhcccccCcCCcccccCHHHHHHHHHhccccchhHHHHHHHHHhccChhhh
Confidence 00000000 0 00 0000 000111122334
Q ss_pred cCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 826 ~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+.++++|+|+++|++|..+| +....+.+..+. .++++++++++||... .+..+.+.+.|.+||.
T Consensus 209 l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 272 (273)
T 1a8s_A 209 LKKIDVPTLVVHGDADQVVP--IEASGIASAALV---KGSTLKIYSGAPHGLT-DTHKDQLNADLLAFIK 272 (273)
T ss_dssp HHTCCSCEEEEEETTCSSSC--STTTHHHHHHHS---TTCEEEEETTCCSCHH-HHTHHHHHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCccCC--hHHHHHHHHHhC---CCcEEEEeCCCCCcch-hhCHHHHHHHHHHHHh
Confidence 56889999999999999998 765544444332 2368999999999874 5567788888999985
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.5e-14 Score=159.28 Aligned_cols=267 Identities=12% Similarity=0.137 Sum_probs=168.2
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
+.|++|++.+ +....+....+...+..++|+|||+.|+.... ...|.++++++++...........
T Consensus 113 ~~v~lw~~~~----~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~- 178 (401)
T 4aez_A 113 RNVYVWNADS----GSVSALAETDESTYVASVKWSHDGSFLSVGLG---------NGLVDIYDVESQTKLRTMAGHQAR- 178 (401)
T ss_dssp TEEEEEETTT----CCEEEEEECCTTCCEEEEEECTTSSEEEEEET---------TSCEEEEETTTCCEEEEECCCSSC-
T ss_pred CeEEEeeCCC----CcEeEeeecCCCCCEEEEEECCCCCEEEEECC---------CCeEEEEECcCCeEEEEecCCCCc-
Confidence 4799999954 44433332323347889999999999988652 457788888877655444333322
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
+..+.| +++.|+... ....|.++++
T Consensus 179 ---v~~~~~--~~~~l~~~~-------------------------------------------------~dg~i~i~d~~ 204 (401)
T 4aez_A 179 ---VGCLSW--NRHVLSSGS-------------------------------------------------RSGAIHHHDVR 204 (401)
T ss_dssp ---EEEEEE--ETTEEEEEE-------------------------------------------------TTSEEEEEETT
T ss_pred ---eEEEEE--CCCEEEEEc-------------------------------------------------CCCCEEEEecc
Confidence 667888 556666551 1234667777
Q ss_pred CC--ceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCcccccc
Q 002194 322 DG--TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSV 397 (954)
Q Consensus 322 ~G--~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~ 397 (954)
.+ ....+... ..+..++|+|||++|+..+.+ +.+.+||+..+.. ..+..+
T Consensus 205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-------------~~v~iwd~~~~~~~~~~~~~------------- 258 (401)
T 4aez_A 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND-------------NVVQIWDARSSIPKFTKTNH------------- 258 (401)
T ss_dssp SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTCSSEEEEECCC-------------
T ss_pred cCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC-------------CeEEEccCCCCCccEEecCC-------------
Confidence 22 23344444 778899999999999988743 3899999986543 333322
Q ss_pred ccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEecc
Q 002194 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 398 ~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
...+..++|+|+|+.+++.... +..+.|.+|++ ..++..........+..++|+|+|+.|+.+....
T Consensus 259 ~~~v~~~~~~p~~~~ll~~~~g----------s~d~~i~i~d~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~ 325 (401)
T 4aez_A 259 NAAVKAVAWCPWQSNLLATGGG----------TMDKQIHFWNA---ATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFP 325 (401)
T ss_dssp SSCCCEEEECTTSTTEEEEECC----------TTTCEEEEEET---TTCCEEEEEECSSCEEEEEECSSSSEEEEEECTT
T ss_pred cceEEEEEECCCCCCEEEEecC----------CCCCEEEEEEC---CCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecC
Confidence 1345789999999987775110 13568999996 4455444445566788899999999999876433
Q ss_pred ccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEE
Q 002194 478 TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLF 557 (954)
Q Consensus 478 ~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 557 (954)
.+...||.+. ++..........+...+.. +.|+|||++|+.... ...|++|
T Consensus 326 dg~i~v~~~~--~~~~~~~~~~~~h~~~v~~------~~~s~dg~~l~s~~~---------------------dg~i~iw 376 (401)
T 4aez_A 326 DNNLSIWSYS--SSGLTKQVDIPAHDTRVLY------SALSPDGRILSTAAS---------------------DENLKFW 376 (401)
T ss_dssp TCEEEEEEEE--TTEEEEEEEEECCSSCCCE------EEECTTSSEEEEECT---------------------TSEEEEE
T ss_pred CCcEEEEecC--CccceeEEEecCCCCCEEE------EEECCCCCEEEEEeC---------------------CCcEEEE
Confidence 3234555544 4211111112233333333 789999999887652 2359999
Q ss_pred ECCCCCeE
Q 002194 558 DINTGSKE 565 (954)
Q Consensus 558 d~~~g~~~ 565 (954)
|+.+++..
T Consensus 377 ~~~~~~~~ 384 (401)
T 4aez_A 377 RVYDGDHV 384 (401)
T ss_dssp ECCC----
T ss_pred ECCCCccc
Confidence 99877643
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.3e-15 Score=154.67 Aligned_cols=200 Identities=12% Similarity=0.079 Sum_probs=130.4
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAV 747 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av 747 (954)
.|.||++||..... ..| ......|+++||.|++ .+.+|+|.+.... .......+|+.+++
T Consensus 16 ~~~vvllHG~~~~~-----------~~~----~~~~~~L~~~g~~vi~---~D~~GhG~s~~~~~~~~~~~~~~d~~~~~ 77 (247)
T 1tqh_A 16 ERAVLLLHGFTGNS-----------ADV----RMLGRFLESKGYTCHA---PIYKGHGVPPEELVHTGPDDWWQDVMNGY 77 (247)
T ss_dssp SCEEEEECCTTCCT-----------HHH----HHHHHHHHHTTCEEEE---CCCTTSSSCHHHHTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCh-----------HHH----HHHHHHHHHCCCEEEe---cccCCCCCCHHHhcCCCHHHHHHHHHHHH
Confidence 36788999953110 011 1345567789999999 6777888663321 12445567788888
Q ss_pred HHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC-C--CC---ccc-------cchhh-hc
Q 002194 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-F--GF---QNE-------DRTLW-EA 813 (954)
Q Consensus 748 ~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-~--~~---~~~-------~~~~~-~~ 813 (954)
+++.+.+ .+++.|+||||||.+++.++.++| ++++|++++........ . .+ ... ..... ..
T Consensus 78 ~~l~~~~---~~~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (247)
T 1tqh_A 78 EFLKNKG---YEKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQE 152 (247)
T ss_dssp HHHHHHT---CCCEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHcC---CCeEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHHHHHHHHHhhcccccchHHHHhh
Confidence 8887654 258999999999999999999997 88888765432210000 0 00 000 00000 00
Q ss_pred HH-----------HHHh--cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCc
Q 002194 814 TS-----------TYVE--MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880 (954)
Q Consensus 814 ~~-----------~~~~--~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 880 (954)
.. .+.. .+....+.++++|+|++||++|..+| ++.++++++.+.. ..++++++|++||.....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p--~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~e 228 (247)
T 1tqh_A 153 MEKFKQTPMKTLKALQELIADVRDHLDLIYAPTFVVQARHDEMIN--PDSANIIYNEIES--PVKQIKWYEQSGHVITLD 228 (247)
T ss_dssp HHHHTTSCCTTHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSC--TTHHHHHHHHCCC--SSEEEEEETTCCSSGGGS
T ss_pred hhcccCCCHHHHHHHHHHHHHHHhhcccCCCCEEEEecCCCCCCC--cchHHHHHHhcCC--CceEEEEeCCCceeeccC
Confidence 00 0000 01223567789999999999999998 8888888776643 347999999999997544
Q ss_pred ccHHHHHHHHHHHHHH
Q 002194 881 ESIMHVLWETDRWLQK 896 (954)
Q Consensus 881 ~~~~~~~~~i~~fl~~ 896 (954)
+..+.+.+.+.+||++
T Consensus 229 ~~~~~~~~~i~~Fl~~ 244 (247)
T 1tqh_A 229 QEKDQLHEDIYAFLES 244 (247)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh
Confidence 4467888999999976
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.64 E-value=8.4e-14 Score=153.36 Aligned_cols=270 Identities=10% Similarity=0.066 Sum_probs=164.1
Q ss_pred CCCCcee-----cC-CCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCC---Cc-e
Q 002194 110 PLPALSF-----SP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL---GQ-E 179 (954)
Q Consensus 110 ~~~~~~~-----SP-DG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~---~~-~ 179 (954)
.+..++| +| ||+.|+..+.+ ..|.+|++...... +. .
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D---------------------------------~~v~iWd~~~~~~~~~~~~~~ 69 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRD---------------------------------KTVMIWKLYEEEQNGYFGIPH 69 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETT---------------------------------SCEEEEEECSSCCSSBSEEEE
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCC---------------------------------CEEEEEECCcCCccccccccc
Confidence 3456667 66 99999988876 57899998532111 11 1
Q ss_pred eeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEE
Q 002194 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (954)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (954)
..+.+ +...+...+|+|||+.|+... ....|.++|+.+++........... +..++|+|||+.|+
T Consensus 70 ~~l~~--h~~~V~~~~~~~~~~~l~s~s---------~D~~v~lwd~~~~~~~~~~~~h~~~----v~~v~~sp~~~~l~ 134 (343)
T 2xzm_R 70 KALTG--HNHFVSDLALSQENCFAISSS---------WDKTLRLWDLRTGTTYKRFVGHQSE----VYSVAFSPDNRQIL 134 (343)
T ss_dssp EEECC--CSSCEEEEEECSSTTEEEEEE---------TTSEEEEEETTSSCEEEEEECCCSC----EEEEEECSSTTEEE
T ss_pred chhcc--CCCceEEEEECCCCCEEEEEc---------CCCcEEEEECCCCcEEEEEcCCCCc----EEEEEECCCCCEEE
Confidence 22333 224688899999999888754 2557788898887664433322222 67899999999988
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCC-ceeEcC---CC-ccc
Q 002194 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEIG---PP-AVY 334 (954)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G-~~~~l~---~~-~~~ 334 (954)
... ....|.++++.+ ....+. .. ..+
T Consensus 135 s~~-------------------------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 135 SAG-------------------------------------------------AEREIKLWNILGECKFSSAEKENHSDWV 165 (343)
T ss_dssp EEE-------------------------------------------------TTSCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred EEc-------------------------------------------------CCCEEEEEeccCCceeeeecccCCCcee
Confidence 661 112355666633 222222 12 456
Q ss_pred cccccCCCC----------cEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccce
Q 002194 335 TSLDPSPDE----------KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSI 404 (954)
Q Consensus 335 ~~~~~SpDG----------k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~ 404 (954)
..+.|+|++ .+|+..+. ++.+.+||..+.....+..+. ..+..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~-------------d~~i~iwd~~~~~~~~~~~h~-------------~~v~~~ 219 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGW-------------DGRLKVWNTNFQIRYTFKAHE-------------SNVNHL 219 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEET-------------TSEEEEEETTTEEEEEEECCS-------------SCEEEE
T ss_pred eeeeeccccccccccCCCCCEEEEEcC-------------CCEEEEEcCCCceeEEEcCcc-------------ccceEE
Confidence 778888887 56666653 348999996654444433322 345679
Q ss_pred eeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEE
Q 002194 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (954)
Q Consensus 405 ~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~ 484 (954)
+|+|||+.|+.. +..+.|.+|++ ...............+..++|+||++.|+... +++ .+||
T Consensus 220 ~~s~~g~~l~sg-------------s~dg~v~iwd~--~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~-d~~--v~iw 281 (343)
T 2xzm_R 220 SISPNGKYIATG-------------GKDKKLLIWDI--LNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQG--VKIF 281 (343)
T ss_dssp EECTTSSEEEEE-------------ETTCEEEEEES--SCCSSCSEEEECSSCEEEEEECSSSCEEEEEE-SSC--EEEE
T ss_pred EECCCCCEEEEE-------------cCCCeEEEEEC--CCCcccceeecCCCcEEEEEECCCCCEEEEEC-CCC--EEEE
Confidence 999999976655 44568899995 23333333333344578899999998776543 322 5555
Q ss_pred EEcCCCCCCCcEEEec-C----------CCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 485 VISPGSKDVAPRILFD-R----------SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 485 ~~d~~~~~~~~~~l~~-~----------~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.+ .++......... . ....+. .++|+|||++|+...
T Consensus 282 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~------~~~~sp~g~~l~sg~ 328 (343)
T 2xzm_R 282 NL--MTQSKAPVCTIEAEPITKAEGQKGKNPQCT------SLAWNALGKKLFAGF 328 (343)
T ss_dssp ES--SSCCSCSEEECCCCSGGGBTTBCCSCCCEE------EEEECSSSCCEEEEE
T ss_pred Ee--CCCCCCceEEeecCcchhhhhhcCCCCceE------EEEECCCCCeEEEec
Confidence 44 433112211111 0 111111 278999999998776
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-13 Score=150.63 Aligned_cols=264 Identities=12% Similarity=0.091 Sum_probs=149.2
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..|++|++..++ ..+.+........+..++|||||++|++... .++...+|.++.++++.+.+.......
T Consensus 15 ~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 15 QQIHVWNLNHEG---ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR------PEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp TEEEEEEECTTS---CEEEEEEEECSSCCCCEEECTTSSEEEEEET------TTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred CeEEEEEECCCC---cEEEeeeEecCCCCceEEECCCCCEEEEeec------CCCeEEEEEecCCCCceeeccccccCC-
Confidence 478999985322 2233322223346788999999999888653 223444444544477765543322111
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
.+..++|+|||+.|+++.. ....|+++++
T Consensus 85 --~~~~~~~s~dg~~l~~~~~------------------------------------------------~~~~i~~~d~~ 114 (343)
T 1ri6_A 85 --SLTHISTDHQGQFVFVGSY------------------------------------------------NAGNVSVTRLE 114 (343)
T ss_dssp --CCSEEEECTTSSEEEEEET------------------------------------------------TTTEEEEEEEE
T ss_pred --CCcEEEEcCCCCEEEEEec------------------------------------------------CCCeEEEEECC
Confidence 1568999999998887611 1123555565
Q ss_pred CCc---ee-EcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEec--cCCCcccCCccc
Q 002194 322 DGT---VK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELC--DLPLAEDIPIAF 394 (954)
Q Consensus 322 ~G~---~~-~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l~--~~~~~~~~p~~~ 394 (954)
+|. .. .+........++|||||++|++..... ..+.+|+++. +....+. .....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------------~~v~~~d~~~~~~~~~~~~~~~~~~------- 175 (343)
T 1ri6_A 115 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ------------DRICLFTVSDDGHLVAQDPAEVTTV------- 175 (343)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG------------TEEEEEEECTTSCEEEEEEEEEECS-------
T ss_pred CCccccccccccCCCCceEEEECCCCCEEEEecCCC------------CEEEEEEecCCCceeeecccccccC-------
Confidence 442 22 222225577899999999998776222 2799999986 5544322 11100
Q ss_pred cccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec---c------cccCceeecc
Q 002194 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL---D------LRYGGISWCD 465 (954)
Q Consensus 395 ~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~---~------~~~~~~~~sp 465 (954)
....++.++|+|||+.+++. . ...+.+.+|+++. .+++.+.+... . .....++|+|
T Consensus 176 --~~~~~~~~~~~pdg~~l~~~-~-----------~~~~~i~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 240 (343)
T 1ri6_A 176 --EGAGPRHMVFHPNEQYAYCV-N-----------ELNSSVDVWELKD-PHGNIECVQTLDMMPENFSDTRWAADIHITP 240 (343)
T ss_dssp --TTCCEEEEEECTTSSEEEEE-E-----------TTTTEEEEEESSC-TTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred --CCCCcceEEECCCCCEEEEE-e-----------CCCCEEEEEEecC-CCCcEEEEeeccccCccccccCCccceEECC
Confidence 01234578999999976554 1 1245788888621 22333322111 1 1223589999
Q ss_pred CCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
||++|+++...++ ...+|.++..++............ .+.. ++|+|||++|+...
T Consensus 241 dg~~l~v~~~~~~-~i~v~d~~~~~~~~~~~~~~~~~~-~~~~------~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 241 DGRHLYACDRTAS-LITVFSVSEDGSVLSKEGFQPTET-QPRG------FNVDHSGKYLIAAG 295 (343)
T ss_dssp TSSEEEEEETTTT-EEEEEEECTTSCCEEEEEEEECSS-SCCC------EEECTTSSEEEEEC
T ss_pred CCCEEEEEecCCC-EEEEEEEcCCCCceEEeeeecCCC-ccce------EEECCCCCEEEEec
Confidence 9999877654332 355555554343212121121111 1222 78999999888765
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.6e-14 Score=153.02 Aligned_cols=289 Identities=10% Similarity=0.049 Sum_probs=167.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce-eecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
.+...+|||||+.|+-.++.. .+--...+|.++...... ...... .......+..++|+||++++...
T Consensus 32 ~v~~~~fs~dG~~l~~~sd~~---~r~Wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~d~~l~~~s------- 100 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGASSLS---GRCWAGSLWLFKDPCAAPNEGFCSA-GVQTEAGVADLTWVGERGILVAS------- 100 (344)
T ss_dssp EEEEEEECTTSCEEEEEECCS---SSCCCEEEEEESSGGGTTCGGGCSE-EEEESSCEEEEEEETTTEEEEEE-------
T ss_pred CEEEEEECCCCCEEEEEeCCc---eEEeeceeeeeccccccCCcceeee-eeccCCCEEEEEEeCCCeEEEEE-------
Confidence 577889999999888655211 111123455554221111 101000 00001126689999998755433
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE-----cCCC-ccccccccCC
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-----IGPP-AVYTSLDPSP 341 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~-----l~~~-~~~~~~~~Sp 341 (954)
..+.|.++|+ +|+... +... ..+..++|||
T Consensus 101 -------------------------------------------~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp 137 (344)
T 4gqb_B 101 -------------------------------------------DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS 137 (344)
T ss_dssp -------------------------------------------TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT
T ss_pred -------------------------------------------CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC
Confidence 1234666677 553221 1122 6788999999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~ 420 (954)
||++|+..+.+ +.|.+||+.+++. +.+..+ ...+..++|+||++.+++..
T Consensus 138 dg~~l~sgs~d-------------~~i~iwd~~~~~~~~~~~~h-------------~~~V~~~~~~~~~~~~l~s~--- 188 (344)
T 4gqb_B 138 SGTQAVSGSKD-------------ICIKVWDLAQQVVLSSYRAH-------------AAQVTCVAASPHKDSVFLSC--- 188 (344)
T ss_dssp TSSEEEEEETT-------------SCEEEEETTTTEEEEEECCC-------------SSCEEEEEECSSCTTEEEEE---
T ss_pred CCCEEEEEeCC-------------CeEEEEECCCCcEEEEEcCc-------------CCceEEEEecCCCCCceeee---
Confidence 99999988743 3899999986654 333322 24457799999998765541
Q ss_pred cCCCccccccCCCeEEEEecCCCCCCCceEEe--ecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002194 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (954)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 498 (954)
+..+.|.+||+ ..+.....+. .....+..++|+|++..++.....++ .|.++|+.++ +....
T Consensus 189 ---------s~D~~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg---~v~~wd~~~~--~~~~~ 252 (344)
T 4gqb_B 189 ---------SEDNRILLWDT--RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG---TVSLVDTKST--SCVLS 252 (344)
T ss_dssp ---------ETTSCEEEEET--TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS---EEEEEESCC----CCEE
T ss_pred ---------ccccccccccc--cccceeeeeecceeeccceeeeecCCCCcceEEeccCC---cEEEEECCCC--cEEEE
Confidence 23457889996 3333334442 22334567899997665554444432 3556677664 33333
Q ss_pred ecCCCCCccCCCCCCCeeeccCCcE-EEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccc
Q 002194 499 FDRSSEDVYSDPGSPMMRRTSTGTY-VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 577 (954)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 577 (954)
...+...+.. ++|+|||.. |+.... ...|++||+.+++..++....+.
T Consensus 253 ~~~h~~~v~~------v~fsp~g~~~lasgs~---------------------D~~i~vwd~~~~~~~~~~~H~~~---- 301 (344)
T 4gqb_B 253 SAVHSQCVTG------LVFSPHSVPFLASLSE---------------------DCSLAVLDSSLSELFRSQAHRDF---- 301 (344)
T ss_dssp EECCSSCEEE------EEECSSSSCCEEEEET---------------------TSCEEEECTTCCEEEEECCCSSC----
T ss_pred EcCCCCCEEE------EEEccCCCeEEEEEeC---------------------CCeEEEEECCCCcEEEEcCCCCC----
Confidence 4444444444 889999964 554441 22499999999876655433321
Q ss_pred eeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002194 578 TTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (954)
Q Consensus 578 ~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g 619 (954)
+.. .+|+||++.++.+.+.. ..+.+|+++++
T Consensus 302 -V~~-------v~~sp~~~~llas~s~D---~~v~~w~v~~~ 332 (344)
T 4gqb_B 302 -VRD-------ATWSPLNHSLLTTVGWD---HQVVHHVVPTE 332 (344)
T ss_dssp -EEE-------EEECSSSTTEEEEEETT---SCEEEEECCC-
T ss_pred -EEE-------EEEeCCCCeEEEEEcCC---CeEEEEECCCC
Confidence 222 47999998877665532 34777876553
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-16 Score=158.86 Aligned_cols=190 Identities=15% Similarity=0.125 Sum_probs=132.2
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccH-HHHHHHHCCcEEEEcCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST-SVLLWLARGFAILGGPTTPIIG 725 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~G~~V~~~~~~~~~G 725 (954)
.+|.+++++.+.|++ ..+.|+||++||+..... .| ... ....|+++||.|+. .+..|
T Consensus 14 ~~g~~l~~~~~~p~~-----~~~~~~vv~~hG~~~~~~-----------~~---~~~~~~~~l~~~G~~v~~---~d~~g 71 (210)
T 1imj_A 14 VQGQALFFREALPGS-----GQARFSVLLLHGIRFSSE-----------TW---QNLGTLHRLAQAGYRAVA---IDLPG 71 (210)
T ss_dssp ETTEEECEEEEECSS-----SCCSCEEEECCCTTCCHH-----------HH---HHHTHHHHHHHTTCEEEE---ECCTT
T ss_pred eCCeEEEEEEeCCCC-----CCCCceEEEECCCCCccc-----------ee---ecchhHHHHHHCCCeEEE---ecCCC
Confidence 489999999998864 123789999999642110 01 111 36678889999999 45556
Q ss_pred CCCcccch--hhHHHHH--HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCC
Q 002194 726 EGDEEAND--RFVEQLV--ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF 801 (954)
Q Consensus 726 ~G~~~~~~--~~~~~~~--~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~ 801 (954)
+|.+.... ....... +|+..+++.+ +.++++++|||+||.+++.++.++|++++++|+++|.....
T Consensus 72 ~g~s~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~---- 141 (210)
T 1imj_A 72 LGHSKEAAAPAPIGELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDK---- 141 (210)
T ss_dssp SGGGTTSCCSSCTTSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGG----
T ss_pred CCCCCCCCCcchhhhcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCcccc----
Confidence 66654322 1112222 5555555554 34689999999999999999999999999999999864310
Q ss_pred CCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcc
Q 002194 802 GFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (954)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (954)
.....+.++++|+|+++|++|. ++ .+.++++ +.+ .+++++++++++|.+. .+
T Consensus 142 -------------------~~~~~~~~~~~p~l~i~g~~D~-~~--~~~~~~~-~~~----~~~~~~~~~~~~H~~~-~~ 193 (210)
T 1imj_A 142 -------------------INAANYASVKTPALIVYGDQDP-MG--QTSFEHL-KQL----PNHRVLIMKGAGHPCY-LD 193 (210)
T ss_dssp -------------------SCHHHHHTCCSCEEEEEETTCH-HH--HHHHHHH-TTS----SSEEEEEETTCCTTHH-HH
T ss_pred -------------------ccchhhhhCCCCEEEEEcCccc-CC--HHHHHHH-hhC----CCCCEEEecCCCcchh-hc
Confidence 0112334578999999999999 87 7776665 433 3579999999999863 34
Q ss_pred cHHHHHHHHHHHHHH
Q 002194 882 SIMHVLWETDRWLQK 896 (954)
Q Consensus 882 ~~~~~~~~i~~fl~~ 896 (954)
....+.+.+.+||++
T Consensus 194 ~~~~~~~~i~~fl~~ 208 (210)
T 1imj_A 194 KPEEWHTGLLDFLQG 208 (210)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 456677888888865
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-14 Score=153.50 Aligned_cols=273 Identities=10% Similarity=0.078 Sum_probs=167.4
Q ss_pred CCCCceecCCC-CEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCC-C-ceeeeecCC
Q 002194 110 PLPALSFSPQR-DKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL-G-QEIEIQGFP 186 (954)
Q Consensus 110 ~~~~~~~SPDG-~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~-~-~~~~lt~~~ 186 (954)
.+..++|||++ +.|+..+.+ ..|.+|++..+... + ..+.+.++
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~D---------------------------------~~v~~W~~~~~~~~~~~~~~~~~~h- 64 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASRD---------------------------------KTLISWKLTGDDQKFGVPVRSFKGH- 64 (319)
T ss_dssp CEEEEEECSSCTTEEEEEETT---------------------------------SEEEEEEEEEETTEEEEEEEEEECC-
T ss_pred eEEEEEccCCCccEEEEecCC---------------------------------ccEEEecCCCCCccccccceEEeCC-
Confidence 45678999976 677777765 57899998532100 0 11233332
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
...+....|+|||++|+.... ...|.++|+.+++..+........ +..+.|+|+++.|+...
T Consensus 65 -~~~v~~~~~s~dg~~l~s~s~---------D~~v~~wd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~s---- 126 (319)
T 3frx_A 65 -SHIVQDCTLTADGAYALSASW---------DKTLRLWDVATGETYQRFVGHKSD----VMSVDIDKKASMIISGS---- 126 (319)
T ss_dssp -SSCEEEEEECTTSSEEEEEET---------TSEEEEEETTTTEEEEEEECCSSC----EEEEEECTTSCEEEEEE----
T ss_pred -cccEEEEEECCCCCEEEEEeC---------CCEEEEEECCCCCeeEEEccCCCc----EEEEEEcCCCCEEEEEe----
Confidence 246888999999999888652 567888899888765443333322 67899999999888761
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCC--
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPD-- 342 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpD-- 342 (954)
. ...|.++++ ......+... ..+..+.|+|+
T Consensus 127 -----------------~----------------------------D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 127 -----------------R----------------------------DKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp -----------------T----------------------------TSCEEEEETTSCEEEEECCCSSCEEEEEECCC--
T ss_pred -----------------C----------------------------CCeEEEEECCCCeEEEEeccCCcEEEEEEccCCC
Confidence 1 123556677 3344444444 66677788885
Q ss_pred ----CcEEEEEeecCCcccccccCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEE
Q 002194 343 ----EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (954)
Q Consensus 343 ----Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~ 417 (954)
+..|+..+.+ +.+.+||+...+.. .+..+ ...+..++|+|||+.|+..
T Consensus 162 ~~~~~~~l~s~~~d-------------~~i~~wd~~~~~~~~~~~~h-------------~~~v~~~~~sp~g~~l~s~- 214 (319)
T 3frx_A 162 ADDDSVTIISAGND-------------KMVKAWNLNQFQIEADFIGH-------------NSNINTLTASPDGTLIASA- 214 (319)
T ss_dssp ----CCEEEEEETT-------------SCEEEEETTTTEEEEEECCC-------------CSCEEEEEECTTSSEEEEE-
T ss_pred CCCCccEEEEEeCC-------------CEEEEEECCcchhheeecCC-------------CCcEEEEEEcCCCCEEEEE-
Confidence 4466666533 38999999865543 22222 2345679999999976655
Q ss_pred EeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEE
Q 002194 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (954)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 497 (954)
+..+.|.+|++ ..++..........+..++|+|||..|+..... + .++|.++... ...
T Consensus 215 ------------~~dg~i~iwd~---~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~--i~v~~~~~~~----~~~ 272 (319)
T 3frx_A 215 ------------GKDGEIMLWNL---AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-G--IKVFSLDPQY----LVD 272 (319)
T ss_dssp ------------ETTCEEEEEET---TTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-E--EEEEEETTEE----EEE
T ss_pred ------------eCCCeEEEEEC---CCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-C--cEEEEeCcCe----eee
Confidence 44568999996 444332223344567889999999988876532 2 5666655321 111
Q ss_pred EecCCCCCcc--CCCCCCCeeeccCCcEEEEEE
Q 002194 498 LFDRSSEDVY--SDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 498 l~~~~~~~~~--~~~~~~~~~~spdG~~l~~~~ 528 (954)
.......... .......++|||||++|+...
T Consensus 273 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~ 305 (319)
T 3frx_A 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305 (319)
T ss_dssp EECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred ccCccccccccCcCcceeEEEECCCCCEEEEee
Confidence 1111100000 000011278999999998776
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=163.07 Aligned_cols=268 Identities=10% Similarity=0.105 Sum_probs=170.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++|+....+ +.|.+|+. ++ .....+.. +..
T Consensus 110 ~v~~~~~s~~~~~l~~~~~d---------------------------------g~i~i~~~--~~--~~~~~~~~--~~~ 150 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVEN---------------------------------GELRLWNK--TG--ALLNVLNF--HRA 150 (425)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SCEEEEET--TS--CEEEEECC--CCS
T ss_pred ceEEEEEcCCCCEEEEEeCC---------------------------------CeEEEEeC--CC--CeeeeccC--CCc
Confidence 56788999999999998775 47899985 22 33444433 234
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc-----------cccccceeEecCCeEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-----------NAIFDNFVWVNNSTLL 258 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~-----------~~~~~~~~wspDG~~l 258 (954)
.+..+.|+|||+.|+.... ...|.++++.+++............ ...+..+.|+|++.++
T Consensus 151 ~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (425)
T 1r5m_A 151 PIVSVKWNKDGTHIISMDV---------ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFV 221 (425)
T ss_dssp CEEEEEECTTSSEEEEEET---------TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEE
T ss_pred cEEEEEECCCCCEEEEEec---------CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEE
Confidence 7889999999999988652 4578888888776654433322110 0004578899998744
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-cccc
Q 002194 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYT 335 (954)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~-~~~~ 335 (954)
+.. ....|+++++ +++. ..+... ..+.
T Consensus 222 ~~~--------------------------------------------------~~g~i~~~d~~~~~~~~~~~~~~~~i~ 251 (425)
T 1r5m_A 222 IPG--------------------------------------------------PKGAIFVYQITEKTPTGKLIGHHGPIS 251 (425)
T ss_dssp EEC--------------------------------------------------GGGCEEEEETTCSSCSEEECCCSSCEE
T ss_pred EEc--------------------------------------------------CCCeEEEEEcCCCceeeeeccCCCceE
Confidence 432 2345888888 6543 334333 6778
Q ss_pred ccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCce
Q 002194 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (954)
Q Consensus 336 ~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~ 414 (954)
.++|+|||++|+..+.+ +.+.+||+..++. ..+..+ ...+..+.|+||| .++
T Consensus 252 ~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~-~l~ 304 (425)
T 1r5m_A 252 VLEFNDTNKLLLSASDD-------------GTLRIWHGGNGNSQNCFYGH-------------SQSIVSASWVGDD-KVI 304 (425)
T ss_dssp EEEEETTTTEEEEEETT-------------SCEEEECSSSBSCSEEECCC-------------SSCEEEEEEETTT-EEE
T ss_pred EEEECCCCCEEEEEcCC-------------CEEEEEECCCCccceEecCC-------------CccEEEEEECCCC-EEE
Confidence 89999999999887733 3899999886532 333221 1345679999999 333
Q ss_pred EEEEeccCCCccccccCCCeEEEEecCCCCCCC-ceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCC
Q 002194 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV 493 (954)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~ 493 (954)
.. +..+.|.+|++ ..++ ...+..+...+..++|+|||+.|+....++. ..+|. +.++..
T Consensus 305 ~~-------------~~d~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~--i~i~~--~~~~~~ 364 (425)
T 1r5m_A 305 SC-------------SMDGSVRLWSL---KQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ--VNVYD--LKKLNS 364 (425)
T ss_dssp EE-------------ETTSEEEEEET---TTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC--EEEEE--CHHHHC
T ss_pred EE-------------eCCCcEEEEEC---CCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe--EEEEE--CCCCcc
Confidence 33 33558999996 3333 3344455667788999999999888764432 44554 443210
Q ss_pred ------------------CcEEEecCCCC--CccCCCCCCCeeeccCCcEEEEEE
Q 002194 494 ------------------APRILFDRSSE--DVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 494 ------------------~~~~l~~~~~~--~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
........+.. .+.. +.|+|||++|+...
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~s~~~~~l~~~~ 413 (425)
T 1r5m_A 365 KSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFD------LSWNCAGNKISVAY 413 (425)
T ss_dssp --------------CEECCEEEEECCTTCCCCEEE------EEECTTSSEEEEEE
T ss_pred ceeeeecccccccCcccchhhhhhcCcccCCceEE------EEccCCCceEEEEe
Confidence 02222222211 3333 88999999888776
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-14 Score=154.10 Aligned_cols=210 Identities=11% Similarity=0.135 Sum_probs=132.4
Q ss_pred EcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCC
Q 002194 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (954)
Q Consensus 645 ~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~ 724 (954)
...+|.+++.... + + -|.||++||++.... .|. .....|+++||.|++ +|.+
T Consensus 12 ~~~~g~~l~y~~~---G-----~--g~~vvllHG~~~~~~-----------~w~----~~~~~l~~~g~~vi~---~D~~ 63 (281)
T 3fob_A 12 ENQAPIEIYYEDH---G-----T--GKPVVLIHGWPLSGR-----------SWE----YQVPALVEAGYRVIT---YDRR 63 (281)
T ss_dssp ETTEEEEEEEEEE---S-----S--SEEEEEECCTTCCGG-----------GGT----TTHHHHHHTTEEEEE---ECCT
T ss_pred CCCCceEEEEEEC---C-----C--CCeEEEECCCCCcHH-----------HHH----HHHHHHHhCCCEEEE---eCCC
Confidence 4556777765443 1 1 356888999752211 121 235567889999999 6777
Q ss_pred CCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh-CCCcccEEEEeccCCCCCC---
Q 002194 725 GEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH-APHLFCCGIARSGAYNRTL--- 798 (954)
Q Consensus 725 G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~~~~~~~~--- 798 (954)
|+|.+..+ ........+|+.+.++.+ +.+++.|+||||||.+++.+++. .|++++++|++++......
T Consensus 64 G~G~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~ 137 (281)
T 3fob_A 64 GFGKSSQPWEGYEYDTFTSDLHQLLEQL------ELQNVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSE 137 (281)
T ss_dssp TSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCS
T ss_pred CCCCCCCCccccCHHHHHHHHHHHHHHc------CCCcEEEEEECccHHHHHHHHHHccccceeEEEEecCCCcchhccc
Confidence 88887543 223455667777766654 33589999999999988776665 5899999998875421110
Q ss_pred -CCCCCcc-c------------------------------cc--------hhhh------------cHHHHHhcCccccc
Q 002194 799 -TPFGFQN-E------------------------------DR--------TLWE------------ATSTYVEMSPFMSA 826 (954)
Q Consensus 799 -~~~~~~~-~------------------------------~~--------~~~~------------~~~~~~~~sp~~~~ 826 (954)
.+..... . .. ..|. ....+...+....+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l 217 (281)
T 3fob_A 138 DHPEGALDDATIETFKSGVINDRLAFLDEFTKGFFAAGDRTDLVSESFRLYNWDIAAGASPKGTLDCITAFSKTDFRKDL 217 (281)
T ss_dssp SSTTCSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCHHHH
T ss_pred cccccccchhHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchHHHHHHhhhhhcccChHHHHHHHHHccccchhhhh
Confidence 0000000 0 00 0000 00011122333456
Q ss_pred CCCCCCEEEEEeCCCCCCCCchHHHHHHH-HHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFF-NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~~~~~~~~-~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
.++++|+||+||++|..+| ++.+.+++ +.+. +.++++++++||... .+..+.+.+.+.+||+
T Consensus 218 ~~i~~P~Lii~G~~D~~~p--~~~~~~~~~~~~p----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 280 (281)
T 3fob_A 218 EKFNIPTLIIHGDSDATVP--FEYSGKLTHEAIP----NSKVALIKGGPHGLN-ATHAKEFNEALLLFLK 280 (281)
T ss_dssp TTCCSCEEEEEETTCSSSC--GGGTHHHHHHHST----TCEEEEETTCCTTHH-HHTHHHHHHHHHHHHC
T ss_pred hhcCCCEEEEecCCCCCcC--HHHHHHHHHHhCC----CceEEEeCCCCCchh-hhhHHHHHHHHHHHhh
Confidence 7899999999999999998 77664443 3332 358999999999863 5667788888888874
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=154.30 Aligned_cols=183 Identities=12% Similarity=0.075 Sum_probs=111.2
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHC--CcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR--GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAV 747 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av 747 (954)
.|+|||+||... ++..+ ........+.++ +|.|++ .+..|+|.+ .. +.+
T Consensus 2 mptIl~lHGf~s-----------s~~s~--k~~~l~~~~~~~~~~~~v~~---pdl~~~g~~---------~~----~~l 52 (202)
T 4fle_A 2 MSTLLYIHGFNS-----------SPSSA--KATTFKSWLQQHHPHIEMQI---PQLPPYPAE---------AA----EML 52 (202)
T ss_dssp -CEEEEECCTTC-----------CTTCH--HHHHHHHHHHHHCTTSEEEC---CCCCSSHHH---------HH----HHH
T ss_pred CcEEEEeCCCCC-----------CCCcc--HHHHHHHHHHHcCCCcEEEE---eCCCCCHHH---------HH----HHH
Confidence 389999999421 11111 011233445554 589998 445555432 22 223
Q ss_pred HHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCC----CCccccchhhhcHHHHHhcCcc
Q 002194 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF----GFQNEDRTLWEATSTYVEMSPF 823 (954)
Q Consensus 748 ~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~sp~ 823 (954)
+.+.+. .+.++|+|+|+||||++|+.++.++|....+++...+..+...... ......................
T Consensus 53 ~~~~~~--~~~~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (202)
T 4fle_A 53 ESIVMD--KAGQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGENQNPYTGQKYVLESRHIYDLKAMQ 130 (202)
T ss_dssp HHHHHH--HTTSCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEEEECTTTCCEEEECHHHHHHHHTTC
T ss_pred HHHHHh--cCCCcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhhhccccccccccchHHHHHHHHhhh
Confidence 333332 2457999999999999999999999887766665544322110000 0000000001111112223445
Q ss_pred cccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 824 ~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
..+.++++|+||+||++|.+|| ++++.++++ ++++.+++|++|.+... +++++.|.+||+
T Consensus 131 ~~~~~~~~P~LiihG~~D~~Vp--~~~s~~l~~-------~~~l~i~~g~~H~~~~~---~~~~~~I~~FL~ 190 (202)
T 4fle_A 131 IEKLESPDLLWLLQQTGDEVLD--YRQAVAYYT-------PCRQTVESGGNHAFVGF---DHYFSPIVTFLG 190 (202)
T ss_dssp CSSCSCGGGEEEEEETTCSSSC--HHHHHHHTT-------TSEEEEESSCCTTCTTG---GGGHHHHHHHHT
T ss_pred hhhhccCceEEEEEeCCCCCCC--HHHHHHHhh-------CCEEEEECCCCcCCCCH---HHHHHHHHHHHh
Confidence 5677889999999999999999 999888763 35889999999987543 356788888886
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-14 Score=152.17 Aligned_cols=281 Identities=10% Similarity=0.084 Sum_probs=190.7
Q ss_pred eeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCC
Q 002194 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (954)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~ 273 (954)
-.++.||++|+|.... +...||.++.+|+..++|+... .--++++|++|+|+.......
T Consensus 19 g~~~~~g~~iy~~n~~-------d~~~ly~~~~dg~~~~~l~~~~---------~~~i~~~g~~Iyy~~~~~~~~----- 77 (302)
T 3s25_A 19 GLFCESDGEVFFSNTN-------DNGRLYAMNIDGSNIHKLSNDT---------AMYINADKNYVYYVRNNNQKI----- 77 (302)
T ss_dssp TCEEEETTEEEEEEGG-------GTTEEEEEETTSCSCEEEEEEE---------EEEEEECSSEEEEEEECC--------
T ss_pred eEEEEeCCEEEEEeCC-------CCceEEEEcCCCCCCEEccCCc---------eeeEEEcCCEEEEEECCCCcc-----
Confidence 3567899999997632 2578999999999999997532 123679999999983221100
Q ss_pred CCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCccccccccCCCCcEEEEEeec
Q 002194 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIH 352 (954)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~ 352 (954)
+...+.......|+++++ +++.++|..... ..|+++|++|+|+...
T Consensus 78 ------------------------------~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~~---~~~s~~g~~Iy~~~~~ 124 (302)
T 3s25_A 78 ------------------------------TSQTFFSYDRNSLCRIKRNGHGSTVLDPDPC---IYASLIGNYIYYLHYD 124 (302)
T ss_dssp ---------------------------------CCSSCCSEEEEEEETTSCCCEEEECSCE---EEEEEETTEEEEEEES
T ss_pred ------------------------------cccceeccCCCeEEEEeCCCCcceEeecCCc---cEEEEeCCEEEEEeec
Confidence 000000012456999999 456666765421 2689999999998721
Q ss_pred CCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCC
Q 002194 353 RPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPR 432 (954)
Q Consensus 353 ~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~ 432 (954)
... ...|+..+++|+..++|+.... ..|+++|+.|+|. . .+.
T Consensus 125 ~~~---------~~~Iy~~~~dGs~~~~lt~~~~-----------------~~~~~~g~~iy~t-~-----------~g~ 166 (302)
T 3s25_A 125 TQT---------ATSLYRIRIDGEEKKKIKNHYL-----------------FTCNTSDRYFYYN-N-----------PKN 166 (302)
T ss_dssp SSS---------CEEEEEEETTSCCCEEEESSCC-----------------CCSEEETTEEEEE-C-----------TTT
T ss_pred CCC---------CceEEEEECCCCCeEEEeCCCc-----------------eEeeEECCEEEEE-e-----------CCC
Confidence 111 2389999999988888887421 3478899987765 1 125
Q ss_pred CeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCC
Q 002194 433 DIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGS 512 (954)
Q Consensus 433 ~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 512 (954)
..|+++++ +|+..++|..... .. .++|+|++|+|..+.++ .+|+++++++. ..++|++...
T Consensus 167 ~~Iy~~~l---~g~~~~~l~~~~~--~~-~~~P~g~~iy~t~~~~~--~~I~~~~ldG~--~~~~Lt~~~~--------- 227 (302)
T 3s25_A 167 GQLYRYDT---ASQSEALFYDCNC--YK-PVVLDDTNVYYMDVNRD--NAIVHVNINNP--NPVVLTEANI--------- 227 (302)
T ss_dssp CCEEEEET---TTTEEEEEECSCE--EE-EEEEETTEEEEEEGGGT--TEEEEECSSSC--CCEECSCSCE---------
T ss_pred ceEEEEEC---CCCCEEEEeCCCc--cc-eeeecCCEEEEEEcCCC--cEEEEEECCCC--CeEEEeCCCc---------
Confidence 58999996 7777777754322 22 35699999999877654 68999999985 4566654321
Q ss_pred CCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCcccccc
Q 002194 513 PMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLY 592 (954)
Q Consensus 513 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s 592 (954)
+.++|+|++|+|... +....|+.+++++...++|...+. .+++
T Consensus 228 --~~~~~~g~~Iy~~~~-------------------~~~~~i~~~~~DG~~r~~l~~~~~----------------~~i~ 270 (302)
T 3s25_A 228 --EHYNVYGSLIFYQRG-------------------GDNPALCVVKNDGTGFKELAKGEF----------------CNIN 270 (302)
T ss_dssp --EEEEEETTEEEEEEC-------------------SSSCEEEEEETTSCCCEEEEESCE----------------EEEE
T ss_pred --ceEEECCCEEEEEEC-------------------CCCcEEEEEECCCCccEEeeCCcc----------------ceEE
Confidence 458999999988751 112579999999988888876531 1345
Q ss_pred ccCCEEEEEEecCCCCceEEEEECCCCceeEee
Q 002194 593 LNQLKILTSKESKTENTQYYIQSWPDKKSCQIT 625 (954)
Q Consensus 593 ~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt 625 (954)
+.+++++|+..... .|+++.+++...++|.
T Consensus 271 i~~d~Iy~td~~~~---~i~~~~~dGs~~~~l~ 300 (302)
T 3s25_A 271 VTSQYVYFTDFVSN---KEYCTSTQNPDTIKAL 300 (302)
T ss_dssp ECSSEEEEEETTTC---CEEEEESSSCCSCEEC
T ss_pred EeCCEEEEEECCCC---eEEEEECCCCCceEec
Confidence 66789998775433 3888887666556654
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-14 Score=152.48 Aligned_cols=206 Identities=12% Similarity=0.008 Sum_probs=136.5
Q ss_pred EEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC
Q 002194 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (954)
Q Consensus 643 ~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (954)
++...+|.++....+-+ .|.||++||+..... .| ......|+ +||.|++ .+
T Consensus 6 ~~~~~~g~~l~~~~~g~----------~~~vv~lHG~~~~~~-----------~~----~~~~~~l~-~~~~vi~---~d 56 (262)
T 3r0v_A 6 TVPSSDGTPIAFERSGS----------GPPVVLVGGALSTRA-----------GG----APLAERLA-PHFTVIC---YD 56 (262)
T ss_dssp EEECTTSCEEEEEEEEC----------SSEEEEECCTTCCGG-----------GG----HHHHHHHT-TTSEEEE---EC
T ss_pred eEEcCCCcEEEEEEcCC----------CCcEEEECCCCcChH-----------HH----HHHHHHHh-cCcEEEE---Ee
Confidence 35667898888666421 367999999642211 11 23444555 9999999 66
Q ss_pred CCCCCCcccch-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCC
Q 002194 723 IIGEGDEEAND-RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF 801 (954)
Q Consensus 723 ~~G~G~~~~~~-~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~ 801 (954)
..|+|.+.... .......+|+.++++.+ + +++.++|||+||.+++.++.++| +++++|+++|.........
T Consensus 57 ~~G~G~S~~~~~~~~~~~~~~~~~~~~~l------~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~ 128 (262)
T 3r0v_A 57 RRGRGDSGDTPPYAVEREIEDLAAIIDAA------G-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRP 128 (262)
T ss_dssp CTTSTTCCCCSSCCHHHHHHHHHHHHHHT------T-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSC
T ss_pred cCCCcCCCCCCCCCHHHHHHHHHHHHHhc------C-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccc
Confidence 67888775543 22455566666666554 3 68999999999999999999999 9999999998654322110
Q ss_pred CCcccc-------------------------chhhhcHHHHH------------------------hcCcccccCCCCCC
Q 002194 802 GFQNED-------------------------RTLWEATSTYV------------------------EMSPFMSANKLKKP 832 (954)
Q Consensus 802 ~~~~~~-------------------------~~~~~~~~~~~------------------------~~sp~~~~~~~~~P 832 (954)
...... ....+..+.+. ...+...+.++++|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P 208 (262)
T 3r0v_A 129 PVPPDYQTRLDALLAEGRRGDAVTYFMTEGVGVPPDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFASISIP 208 (262)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHTSCCCHHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHTTCCSC
T ss_pred hhhhHHHHHHHHHhhccchhhHHHHHhhcccCCCHHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcCcCCCC
Confidence 000000 00000000000 01234456788999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 833 ~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+|+++|++|..+| .+.+.++.+.+. .+++++++++||. +....+.+.+.+||+
T Consensus 209 ~lii~G~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~----~~p~~~~~~i~~fl~ 261 (262)
T 3r0v_A 209 TLVMDGGASPAWI--RHTAQELADTIP----NARYVTLENQTHT----VAPDAIAPVLVEFFT 261 (262)
T ss_dssp EEEEECTTCCHHH--HHHHHHHHHHST----TEEEEECCCSSSS----CCHHHHHHHHHHHHC
T ss_pred EEEEeecCCCCCC--HHHHHHHHHhCC----CCeEEEecCCCcc----cCHHHHHHHHHHHHh
Confidence 9999999999988 888888877663 3689999999993 356778888888875
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-14 Score=151.36 Aligned_cols=212 Identities=14% Similarity=0.143 Sum_probs=135.6
Q ss_pred EEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC
Q 002194 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (954)
+.+.+|.+++...+- + .|.||++||.+.... .| ...+..|+++||.|++ .+.
T Consensus 3 ~~~~~g~~l~y~~~g--------~--g~~vvllHG~~~~~~-----------~w----~~~~~~l~~~g~~vi~---~D~ 54 (274)
T 1a8q_A 3 CTTRDGVEIFYKDWG--------Q--GRPVVFIHGWPLNGD-----------AW----QDQLKAVVDAGYRGIA---HDR 54 (274)
T ss_dssp EECTTSCEEEEEEEC--------S--SSEEEEECCTTCCGG-----------GG----HHHHHHHHHTTCEEEE---ECC
T ss_pred EEccCCCEEEEEecC--------C--CceEEEECCCcchHH-----------HH----HHHHHHHHhCCCeEEE---EcC
Confidence 456788888765541 1 367999999642111 11 1345678889999999 677
Q ss_pred CCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCcccEEEEeccCCCCCC--
Q 002194 724 IGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTL-- 798 (954)
Q Consensus 724 ~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~~~~-- 798 (954)
+|+|.+... ........+|+.+.++.+ +.+++.++||||||.+++.+++++ |++++++|++++......
T Consensus 55 ~G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~ 128 (274)
T 1a8q_A 55 RGHGHSTPVWDGYDFDTFADDLNDLLTDL------DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKS 128 (274)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCC
T ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHc------CCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCCCcccccc
Confidence 788887543 223456677777776664 345899999999999999877775 899999999886421100
Q ss_pred --CCCCCcccc------------------------c--------------hhhhc-----H-------HHHHhcCccccc
Q 002194 799 --TPFGFQNED------------------------R--------------TLWEA-----T-------STYVEMSPFMSA 826 (954)
Q Consensus 799 --~~~~~~~~~------------------------~--------------~~~~~-----~-------~~~~~~sp~~~~ 826 (954)
.+....... . ..|.. . ..+...+....+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (274)
T 1a8q_A 129 DKNPDGVPDEVFDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDL 208 (274)
T ss_dssp SSCTTSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHH
T ss_pred ccCcccchHHHHHHHHHHhhccHHHHHHHhcccccccccccccccHHHHHHHHHHhhhcChHHHHHHHhhhhcCcHHHHh
Confidence 000000000 0 00000 0 001111223356
Q ss_pred CCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcc--cHHHHHHHHHHHHH
Q 002194 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE--SIMHVLWETDRWLQ 895 (954)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~--~~~~~~~~i~~fl~ 895 (954)
.++++|+|+++|++|..+| ++...+.+..+. .++++++++++||... .+ ..+.+.+.|.+||+
T Consensus 209 ~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~~~p~~~~~~i~~fl~ 273 (274)
T 1a8q_A 209 KKFDIPTLVVHGDDDQVVP--IDATGRKSAQII---PNAELKVYEGSSHGIA-MVPGDKEKFNRDLLEFLN 273 (274)
T ss_dssp TTCCSCEEEEEETTCSSSC--GGGTHHHHHHHS---TTCEEEEETTCCTTTT-TSTTHHHHHHHHHHHHHT
T ss_pred hcCCCCEEEEecCcCCCCC--cHHHHHHHHhhC---CCceEEEECCCCCcee-cccCCHHHHHHHHHHHhc
Confidence 7889999999999999998 775544443332 2368999999999875 34 67788888998874
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-13 Score=148.29 Aligned_cols=266 Identities=15% Similarity=0.122 Sum_probs=171.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++|+....+ +.|.+|++.. + .....+.. +..
T Consensus 25 ~v~~~~~s~~~~~l~s~~~d---------------------------------g~i~iw~~~~-~--~~~~~~~~--h~~ 66 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSAD---------------------------------KLIKIWGAYD-G--KFEKTISG--HKL 66 (312)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SCEEEEETTT-C--CEEEEECC--CSS
T ss_pred cEEEEEECCCCCEEEEeeCC---------------------------------CeEEEEeCCC-c--ccchhhcc--CCC
Confidence 46678999999999998875 5789999853 2 22333433 224
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....|+|||+.|+.... ...|.++|+++++........... +..+.|+|+++.|+...
T Consensus 67 ~v~~~~~~~~~~~l~s~~~---------d~~i~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~------- 126 (312)
T 4ery_A 67 GISDVAWSSDSNLLVSASD---------DKTLKIWDVSSGKCLKTLKGHSNY----VFCCNFNPQSNLIVSGS------- 126 (312)
T ss_dssp CEEEEEECTTSSEEEEEET---------TSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSSSEEEEEE-------
T ss_pred ceEEEEEcCCCCEEEEECC---------CCEEEEEECCCCcEEEEEcCCCCC----EEEEEEcCCCCEEEEEe-------
Confidence 6888999999999988652 557888898887765443333322 66889999999888761
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~-~~~~~~~~SpDGk~l 346 (954)
....|.++|+ +++ ...+... ..+..+.|+|||+.|
T Consensus 127 ------------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (312)
T 4ery_A 127 ------------------------------------------FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 164 (312)
T ss_dssp ------------------------------------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred ------------------------------------------CCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEE
Confidence 1234777788 664 3444444 677889999999999
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
+..+.+ +.+.+||+..++. ..+.... ...+..++|+|||+.++..
T Consensus 165 ~~~~~d-------------~~i~~wd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~--------- 210 (312)
T 4ery_A 165 VSSSYD-------------GLCRIWDTASGQCLKTLIDDD------------NPPVSFVKFSPNGKYILAA--------- 210 (312)
T ss_dssp EEEETT-------------SCEEEEETTTCCEEEEECCSS------------CCCEEEEEECTTSSEEEEE---------
T ss_pred EEEeCC-------------CcEEEEECCCCceeeEEeccC------------CCceEEEEECCCCCEEEEE---------
Confidence 887743 3899999986543 3332211 1223568999999976665
Q ss_pred cccccCCCeEEEEecCCCCCCC-ceEEeeccccc--Cceeec-cCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecC
Q 002194 426 KVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRY--GGISWC-DDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~--~~~~~s-pDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 501 (954)
+..+.|.+|++ ..++ ...+..+.... ....|+ ++++.|+..+.++ .|.++++.++ +.......
T Consensus 211 ----~~d~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg----~i~vwd~~~~--~~~~~~~~ 277 (312)
T 4ery_A 211 ----TLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN----LVYIWNLQTK--EIVQKLQG 277 (312)
T ss_dssp ----ETTTEEEEEET---TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTS----CEEEEETTTC--CEEEEECC
T ss_pred ----cCCCeEEEEEC---CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCC----EEEEEECCCc--hhhhhhhc
Confidence 34568899996 3333 23333332222 223455 4566666554332 3555666664 33333444
Q ss_pred CCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 502 SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 502 ~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+...+.. ++|+|++..++...
T Consensus 278 h~~~v~~------~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 278 HTDVVIS------TACHPTENIIASAA 298 (312)
T ss_dssp CSSCEEE------EEECSSSSEEEEEE
T ss_pred cCCcEEE------EeecCcCCceEEEE
Confidence 4444444 78999999888765
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-13 Score=157.59 Aligned_cols=322 Identities=8% Similarity=0.016 Sum_probs=184.1
Q ss_pred eceEEEEccCCCCCCce-eeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEEC--CCCceeecccCCC
Q 002194 163 TGIGIHQLFPDGKLGQE-IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV--DTGKARPLFQSPD 239 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~-~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~--~~g~~~~lt~~~~ 239 (954)
..|.+||..+ ++. ..+. .+..+..++|||||++|+.... ...|.++|+ .+++...-.....
T Consensus 159 ~~V~v~D~~t----~~~~~~i~---~g~~~~~v~~spdg~~l~v~~~---------d~~V~v~D~~~~t~~~~~~i~~g~ 222 (543)
T 1nir_A 159 GQIALVDGDS----KKIVKVID---TGYAVHISRMSASGRYLLVIGR---------DARIDMIDLWAKEPTKVAEIKIGI 222 (543)
T ss_dssp TEEEEEETTT----CCEEEEEE---CSTTEEEEEECTTSCEEEEEET---------TSEEEEEETTSSSCEEEEEEECCS
T ss_pred CeEEEEECCC----ceEEEEEe---cCcccceEEECCCCCEEEEECC---------CCeEEEEECcCCCCcEEEEEecCC
Confidence 4688998743 332 2232 2223667889999999887652 267899998 6665543333222
Q ss_pred ccccccccceeEec----CCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccce
Q 002194 240 IYLNAIFDNFVWVN----NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQ 315 (954)
Q Consensus 240 ~~~~~~~~~~~wsp----DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~ 315 (954)
. ...++||| ||++|+++.. ...+
T Consensus 223 ~-----p~~va~sp~~~~dg~~l~v~~~------------------------------------------------~~~~ 249 (543)
T 1nir_A 223 E-----ARSVESSKFKGYEDRYTIAGAY------------------------------------------------WPPQ 249 (543)
T ss_dssp E-----EEEEEECCSTTCTTTEEEEEEE------------------------------------------------ESSE
T ss_pred C-----cceEEeCCCcCCCCCEEEEEEc------------------------------------------------cCCe
Confidence 1 56889999 9999987610 1234
Q ss_pred EEEEEe-CCceeE-cCCC------------ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEe
Q 002194 316 LVLVSL-DGTVKE-IGPP------------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL 381 (954)
Q Consensus 316 l~~~~~-~G~~~~-l~~~------------~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l 381 (954)
|.++|. +++... +... ..+..+.+||||+.++++... .+.|++||....+...+
T Consensus 250 v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------------~g~i~vvd~~~~~~l~~ 317 (543)
T 1nir_A 250 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------------TGKVLLVNYKDIDNLTV 317 (543)
T ss_dssp EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------------TTEEEEEECTTSSSCEE
T ss_pred EEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC------------CCeEEEEEecCCCccee
Confidence 566676 554322 2211 144568899999988776532 23899999875332111
Q ss_pred ccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceE-Eeeccc--cc
Q 002194 382 CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-LHKLDL--RY 458 (954)
Q Consensus 382 ~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~-l~~~~~--~~ 458 (954)
+..+. ...+..+.|+|||+.++.. . ...+.|.+||+ .+++... +..... ..
T Consensus 318 ~~i~~-----------~~~~~~~~~spdg~~l~va-~-----------~~~~~v~v~D~---~tg~l~~~i~~g~~ph~g 371 (543)
T 1nir_A 318 TSIGA-----------APFLHDGGWDSSHRYFMTA-A-----------NNSNKVAVIDS---KDRRLSALVDVGKTPHPG 371 (543)
T ss_dssp EEEEC-----------CSSCCCEEECTTSCEEEEE-E-----------GGGTEEEEEET---TTTEEEEEEECSSSBCCT
T ss_pred EEecc-----------CcCccCceECCCCCEEEEE-e-----------cCCCeEEEEEC---CCCeEEEeeccCCCCCCC
Confidence 11111 1234578999999966443 1 22457888996 4444333 221111 11
Q ss_pred Cceee-ccCCceEEEEEeccccceEEEEEcCCCCC-----CCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeecc
Q 002194 459 GGISW-CDDSLALVYESWYKTRRTRTWVISPGSKD-----VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKEN 532 (954)
Q Consensus 459 ~~~~~-spDg~~l~~~~~~~~~~~~l~~~d~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~ 532 (954)
....| +||+..++.+..... ..|.++++++.. .+............ ..+.++|||++|+.....
T Consensus 372 ~g~~~~~p~~g~~~~s~~~~d--~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~------~~v~~~pdg~~l~v~~~~-- 441 (543)
T 1nir_A 372 RGANFVHPKYGPVWSTSHLGD--GSISLIGTDPKNHPQYAWKKVAELQGQGGGS------LFIKTHPKSSHLYVDTTF-- 441 (543)
T ss_dssp TCEEEEETTTEEEEEEEBSSS--SEEEEEECCTTTCTTTBTSEEEEEECSCSCC------CCEECCTTCCEEEECCTT--
T ss_pred CCcccCCCCCccEEEeccCCC--ceEEEEEeCCCCCchhcCeEEEEEEcCCCCc------eEEEcCCCCCcEEEecCC--
Confidence 23344 688777665543222 235555555411 12222222222111 227899999998765410
Q ss_pred CCCcEEEEecCCCCCCC-CCCeEEEEECCCCCeE-EEec-------cCcccccceeEEeccCCccccccccCCEEEEEEe
Q 002194 533 DEGTYILLNGNGATPEG-NIPFLDLFDINTGSKE-RIWE-------SDKEKYYETTVALMSDQTEGDLYLNQLKILTSKE 603 (954)
Q Consensus 533 ~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~g~~~-~l~~-------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (954)
.+.. ....|.+||+++++.. .+.. .++. ..+. .+.|++||++++++.+
T Consensus 442 -------------~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~---~~~~-------~~~~~~~g~~~~~s~~ 498 (543)
T 1nir_A 442 -------------NPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA---KRVV-------QPEYNKRGDEVWFSVW 498 (543)
T ss_dssp -------------CSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC---CEEE-------EEEECSSSSEEEEEEE
T ss_pred -------------CCCcccCceEEEEECCCCCCCeEEeechhhcccCCCC---CceE-------eccCCCCCCEEEEEee
Confidence 0000 0235999999988754 3321 0100 0111 2579999999999887
Q ss_pred cC-CCCceEEEEECCCCceeEe
Q 002194 604 SK-TENTQYYIQSWPDKKSCQI 624 (954)
Q Consensus 604 s~-~~p~~l~~~~~~~g~~~~L 624 (954)
+. .....|.++|..+++....
T Consensus 499 ~~~~~~~~i~v~D~~t~~~~~~ 520 (543)
T 1nir_A 499 NGKNDSSALVVVDDKTLKLKAV 520 (543)
T ss_dssp CCTTSCCEEEEEETTTTEEEEE
T ss_pred cCCCCCCeEEEEECCCceEEEe
Confidence 54 3467899999988876543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-14 Score=156.91 Aligned_cols=236 Identities=12% Similarity=0.149 Sum_probs=154.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++|++...+ +.|++|++.. +.......+.. +..
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d---------------------------------~~v~i~~~~~-~~~~~~~~~~~--h~~ 53 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNN---------------------------------HEVHIYEKSG-NKWVQVHELKE--HNG 53 (372)
T ss_dssp CCCEEEECTTSSEEEEECSS---------------------------------SEEEEEEEET-TEEEEEEEEEC--CSS
T ss_pred CeEEEEECCCCCEEEEEeCC---------------------------------CEEEEEeCCC-CcEEeeeeecC--CCC
Confidence 67889999999999988664 4799999854 10002333433 234
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeec---ccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL---FQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l---t~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
.+..+.|+|||+.|+... . ...|.++++++++.... ..... .+..+.|+|||+.|++..
T Consensus 54 ~v~~~~~~~~~~~l~~~~-------~--dg~i~vwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~---- 115 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCG-------T--DRNAYVWTLKGRTWKPTLVILRINR-----AARCVRWAPNEKKFAVGS---- 115 (372)
T ss_dssp CEEEEEEETTTTEEEEEE-------T--TSCEEEEEEETTEEEEEEECCCCSS-----CEEEEEECTTSSEEEEEE----
T ss_pred cccEEEEeCCCCEEEEEc-------C--CCeEEEEECCCCeeeeeEEeecCCC-----ceeEEEECCCCCEEEEEe----
Confidence 788999999999998865 2 34566667667653322 22222 267899999999998761
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc----eeEcCCC--cccccccc
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----VKEIGPP--AVYTSLDP 339 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~----~~~l~~~--~~~~~~~~ 339 (954)
....|.++++ .+. ...+... ..+..++|
T Consensus 116 ---------------------------------------------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 116 ---------------------------------------------GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp ---------------------------------------------TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred ---------------------------------------------CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 1123555555 333 2333222 67889999
Q ss_pred CCCCcEEEEEeecCCcccccccCCCCcceEEEeccC-------------------ceEEEeccCCCcccCCccccccccC
Q 002194 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-------------------IFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 340 SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-------------------~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
+|||++|+..+.+ +.+.+||+.. .....+. .....
T Consensus 151 ~~~~~~l~~~~~d-------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 204 (372)
T 1k8k_C 151 HPNSVLLAAGSCD-------------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-------------SSCGW 204 (372)
T ss_dssp CTTSSEEEEEETT-------------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-------------CCSSC
T ss_pred cCCCCEEEEEcCC-------------CCEEEEEcccccccccccccccccccchhhheEecC-------------CCCCe
Confidence 9999999988743 3899999642 1222221 12234
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
+..+.|+|||+.++.. +..+.|.+|++ .++.....+..+...+..++|+|||+.|+.. . ++ .
T Consensus 205 v~~~~~~~~~~~l~~~-------------~~d~~i~i~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~-~ 266 (372)
T 1k8k_C 205 VHGVCFSANGSRVAWV-------------SHDSTVCLADA--DKKMAVATLASETLPLLAVTFITESSLVAAG-H-DC-F 266 (372)
T ss_dssp EEEEEECSSSSEEEEE-------------ETTTEEEEEEG--GGTTEEEEEECSSCCEEEEEEEETTEEEEEE-T-TS-S
T ss_pred EEEEEECCCCCEEEEE-------------eCCCEEEEEEC--CCCceeEEEccCCCCeEEEEEecCCCEEEEE-e-CC-e
Confidence 5679999999866655 33557899996 2333445555566677889999999977765 3 22 3
Q ss_pred eEEEEEcC
Q 002194 481 TRTWVISP 488 (954)
Q Consensus 481 ~~l~~~d~ 488 (954)
..+|.++.
T Consensus 267 i~i~~~~~ 274 (372)
T 1k8k_C 267 PVLFTYDS 274 (372)
T ss_dssp CEEEEEET
T ss_pred EEEEEccC
Confidence 67777765
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=155.55 Aligned_cols=214 Identities=16% Similarity=0.102 Sum_probs=140.5
Q ss_pred EEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCC
Q 002194 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (954)
Q Consensus 642 ~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~ 721 (954)
..+...+|.+++...+-|+ + .|.||++||++..... .| ...+..| ++||.|++ .
T Consensus 5 ~~~~~~~g~~l~~~~~G~~------~--~~~vvllHG~~~~~~~----------~w----~~~~~~L-~~~~~vi~---~ 58 (286)
T 2yys_A 5 IGYVPVGEAELYVEDVGPV------E--GPALFVLHGGPGGNAY----------VL----REGLQDY-LEGFRVVY---F 58 (286)
T ss_dssp EEEEECSSCEEEEEEESCT------T--SCEEEEECCTTTCCSH----------HH----HHHHGGG-CTTSEEEE---E
T ss_pred eeEEeECCEEEEEEeecCC------C--CCEEEEECCCCCcchh----------HH----HHHHHHh-cCCCEEEE---E
Confidence 3455568888988776542 1 3679999996421100 01 1223334 57999999 6
Q ss_pred CCCCCCCccc-c----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC
Q 002194 722 PIIGEGDEEA-N----DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (954)
Q Consensus 722 ~~~G~G~~~~-~----~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (954)
|.+|+|.+.. + ........+|+.+.++.+ +.+++.|+||||||.+|+.++.++|+ ++++|++++....
T Consensus 59 Dl~G~G~S~~~~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~~ 131 (286)
T 2yys_A 59 DQRGSGRSLELPQDPRLFTVDALVEDTLLLAEAL------GVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVNF 131 (286)
T ss_dssp CCTTSTTSCCCCSCGGGCCHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCBH
T ss_pred CCCCCCCCCCCccCcccCcHHHHHHHHHHHHHHh------CCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccCc
Confidence 7778888865 3 223556677777777665 23589999999999999999999999 9999999875421
Q ss_pred CCC--CC-------C-------Ccc----cc-----c------hhh-hc----------------HHH--H---HhcCcc
Q 002194 797 TLT--PF-------G-------FQN----ED-----R------TLW-EA----------------TST--Y---VEMSPF 823 (954)
Q Consensus 797 ~~~--~~-------~-------~~~----~~-----~------~~~-~~----------------~~~--~---~~~sp~ 823 (954)
... .. . +.. .. . ..+ .. ... + ...+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (286)
T 2yys_A 132 PWLAARLAEAAGLAPLPDPEENLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLDYT 211 (286)
T ss_dssp HHHHHHHHHHTTCCCCSCHHHHHHHHHHHSCHHHHHHHHHCSSHHHHHHHHHHHHHTTCCCCSHHHHHHHHTTGGGCBCG
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHhccCChHHHHHhhhccCCccccChHHHHHHHhhccccccchhhcccccccCChh
Confidence 000 00 0 000 00 0 000 00 000 0 011222
Q ss_pred cccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 824 ~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
..+.++++|+|+++|++|..+| .. ++++.+ +... +++++|++||... .+..+.+.+.|.+||.+.
T Consensus 212 ~~l~~i~~P~lvi~G~~D~~~~--~~-~~~~~~-~~~~----~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 276 (286)
T 2yys_A 212 PYLTPERRPLYVLVGERDGTSY--PY-AEEVAS-RLRA----PIRVLPEAGHYLW-IDAPEAFEEAFKEALAAL 276 (286)
T ss_dssp GGCCCCSSCEEEEEETTCTTTT--TT-HHHHHH-HHTC----CEEEETTCCSSHH-HHCHHHHHHHHHHHHHTT
T ss_pred hhhhhcCCCEEEEEeCCCCcCC--Hh-HHHHHh-CCCC----CEEEeCCCCCCcC-hhhHHHHHHHHHHHHHhh
Confidence 3466789999999999999998 78 888877 7543 7889999999864 556778889999999763
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.8e-15 Score=154.00 Aligned_cols=212 Identities=17% Similarity=0.133 Sum_probs=131.2
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+++...+-+ + .|.||++||++... ...| ...+..|+++||.|++ .+.+|+
T Consensus 9 ~~g~~l~~~~~g~------~---~~~vvllHG~~~~~----------~~~~----~~~~~~l~~~g~~vi~---~D~~G~ 62 (254)
T 2ocg_A 9 VNGVQLHYQQTGE------G---DHAVLLLPGMLGSG----------ETDF----GPQLKNLNKKLFTVVA---WDPRGY 62 (254)
T ss_dssp ETTEEEEEEEEEC------C---SEEEEEECCTTCCH----------HHHC----HHHHHHSCTTTEEEEE---ECCTTS
T ss_pred ECCEEEEEEEecC------C---CCeEEEECCCCCCC----------ccch----HHHHHHHhhCCCeEEE---ECCCCC
Confidence 3788887655421 1 35788999953110 0011 1345566778999999 666788
Q ss_pred CCcccch-hhH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC------
Q 002194 727 GDEEAND-RFV-EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL------ 798 (954)
Q Consensus 727 G~~~~~~-~~~-~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~------ 798 (954)
|.+.... .+. ....+++..+++++.+. +.+++.++||||||.+|+.++.++|++++++|++++......
T Consensus 63 G~S~~~~~~~~~~~~~~~~~~~~~~l~~l---~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 139 (254)
T 2ocg_A 63 GHSRPPDRDFPADFFERDAKDAVDLMKAL---KFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIY 139 (254)
T ss_dssp TTCCSSCCCCCTTHHHHHHHHHHHHHHHT---TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHh---CCCCEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHH
Confidence 8775421 110 11223334444444443 346899999999999999999999999999999886422110
Q ss_pred ---CCCC-Cccccch-------------hhhc-HHHHHhc-------CcccccCCCCCCEEEEEeCCCCCCCCchHHHHH
Q 002194 799 ---TPFG-FQNEDRT-------------LWEA-TSTYVEM-------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDR 853 (954)
Q Consensus 799 ---~~~~-~~~~~~~-------------~~~~-~~~~~~~-------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~ 853 (954)
.... +...... .|.. ...+... .....+.++++|+|++||++|..+| ...++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~ 217 (254)
T 2ocg_A 140 EGIRDVSKWSERTRKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVP--RFHADF 217 (254)
T ss_dssp HTTSCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHGGGGSGGGBSSGGGGGGCCSCEEEEEETTCSSSC--HHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHhcchhhHHHHHHHHHHHHHHHhccCCchhhhhhhcccCCEEEEecCCCccCC--HHHHHH
Confidence 0000 0000000 0000 0001110 1123567889999999999999998 888887
Q ss_pred HHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
+.+.+.. .+++++|++||... .+..+.+.+.+.+||
T Consensus 218 ~~~~~~~----~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl 253 (254)
T 2ocg_A 218 IHKHVKG----SRLHLMPEGKHNLH-LRFADEFNKLAEDFL 253 (254)
T ss_dssp HHHHSTT----CEEEEETTCCTTHH-HHTHHHHHHHHHHHH
T ss_pred HHHhCCC----CEEEEcCCCCCchh-hhCHHHHHHHHHHHh
Confidence 7776543 48899999999874 456677788888887
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.6e-15 Score=158.45 Aligned_cols=213 Identities=12% Similarity=0.088 Sum_probs=140.6
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002194 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (954)
Q Consensus 648 ~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G 727 (954)
+|.++.....-+ .|+||++||.+.... .|. ..+..|+++||.|++ .+..|+|
T Consensus 17 ~g~~l~~~~~g~----------~~~vv~~HG~~~~~~-----------~~~----~~~~~l~~~g~~v~~---~d~~G~G 68 (309)
T 3u1t_A 17 EGATIAYVDEGS----------GQPVLFLHGNPTSSY-----------LWR----NIIPYVVAAGYRAVA---PDLIGMG 68 (309)
T ss_dssp TTEEEEEEEEEC----------SSEEEEECCTTCCGG-----------GGT----TTHHHHHHTTCEEEE---ECCTTST
T ss_pred CCeEEEEEEcCC----------CCEEEEECCCcchhh-----------hHH----HHHHHHHhCCCEEEE---EccCCCC
Confidence 788887655421 478999999642211 121 235567889999999 5666788
Q ss_pred Ccccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCcc
Q 002194 728 DEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN 805 (954)
Q Consensus 728 ~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~ 805 (954)
.+.... .......+|+.++++.+ +.+++.|+|||+||.+++.++.++|++++++|++++..........+..
T Consensus 69 ~S~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 142 (309)
T 3u1t_A 69 DSAKPDIEYRLQDHVAYMDGFIDAL------GLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEA 142 (309)
T ss_dssp TSCCCSSCCCHHHHHHHHHHHHHHH------TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCTTTCSBSCSGG
T ss_pred CCCCCCcccCHHHHHHHHHHHHHHc------CCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCCCccccccccc
Confidence 775532 33456667777766665 3358999999999999999999999999999999876442210000000
Q ss_pred --------------c------------------------cchhhhcHHHHHh-----------------c----------
Q 002194 806 --------------E------------------------DRTLWEATSTYVE-----------------M---------- 820 (954)
Q Consensus 806 --------------~------------------------~~~~~~~~~~~~~-----------------~---------- 820 (954)
. .....+....+.. .
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (309)
T 3u1t_A 143 MGPQLGPLFRDLRTADVGEKMVLDGNFFVETILPEMGVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAE 222 (309)
T ss_dssp GHHHHHHHHHHHTSTTHHHHHHTTTCHHHHTHHHHTSCSSCCCHHHHHHHHTTCCSTGGGHHHHHHHHHSCBTTBSHHHH
T ss_pred cchhhhHHHHHHhccchhhhhccccceehhhhcccccccccCCHHHHHHHHHhcCCccccchHHHHHHHhccccccchhh
Confidence 0 0000000000000 0
Q ss_pred ----CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 821 ----SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 821 ----sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
+....+.++++|+|+++|++|..+| ...+.++.+.+.. .++++++++||... .+....+.+.|.+||++
T Consensus 223 ~~~~~~~~~l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~~~----~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~ 295 (309)
T 3u1t_A 223 AEVLKNGEWLMASPIPKLLFHAEPGALAP--KPVVDYLSENVPN----LEVRFVGAGTHFLQ-EDHPHLIGQGIADWLRR 295 (309)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHHHSTT----EEEEEEEEESSCHH-HHCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccCCCCEEEEecCCCCCCC--HHHHHHHHhhCCC----CEEEEecCCcccch-hhCHHHHHHHHHHHHHh
Confidence 0112245678999999999999998 8888788776643 47777799999763 56678889999999999
Q ss_pred hcccC
Q 002194 897 YCVSN 901 (954)
Q Consensus 897 ~l~~~ 901 (954)
.....
T Consensus 296 ~~~~~ 300 (309)
T 3u1t_A 296 NKPHA 300 (309)
T ss_dssp HCCCC
T ss_pred cchhh
Confidence 86543
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-15 Score=158.11 Aligned_cols=213 Identities=19% Similarity=0.147 Sum_probs=136.1
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+++...+-+. . +.|.||++||++.... .| . .....++++||.|++ .|.+|+
T Consensus 12 ~~g~~l~~~~~g~~-----~--~~~~vvllHG~~~~~~-----------~~---~-~~~~~l~~~g~~vi~---~D~~G~ 66 (293)
T 1mtz_A 12 VNGIYIYYKLCKAP-----E--EKAKLMTMHGGPGMSH-----------DY---L-LSLRDMTKEGITVLF---YDQFGC 66 (293)
T ss_dssp ETTEEEEEEEECCS-----S--CSEEEEEECCTTTCCS-----------GG---G-GGGGGGGGGTEEEEE---ECCTTS
T ss_pred ECCEEEEEEEECCC-----C--CCCeEEEEeCCCCcch-----------hH---H-HHHHHHHhcCcEEEE---ecCCCC
Confidence 46888876665321 1 1367899999642111 11 1 112234678999999 677788
Q ss_pred CCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC-----
Q 002194 727 GDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL----- 798 (954)
Q Consensus 727 G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~----- 798 (954)
|.+.... .......+|+.+.++.+. +.+++.|+||||||.+|+.+|.++|++++++|++++......
T Consensus 67 G~S~~~~~~~~~~~~~~~dl~~~~~~l~-----~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~ 141 (293)
T 1mtz_A 67 GRSEEPDQSKFTIDYGVEEAEALRSKLF-----GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEM 141 (293)
T ss_dssp TTSCCCCGGGCSHHHHHHHHHHHHHHHH-----TTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHH
T ss_pred ccCCCCCCCcccHHHHHHHHHHHHHHhc-----CCCcEEEEEecHHHHHHHHHHHhCchhhheEEecCCccChHHHHHHH
Confidence 8876542 234566777777777662 124899999999999999999999999999999987643100
Q ss_pred ------CCCC-------------Cccc-c--------------chhhhcH-----------HHHH---------------
Q 002194 799 ------TPFG-------------FQNE-D--------------RTLWEAT-----------STYV--------------- 818 (954)
Q Consensus 799 ------~~~~-------------~~~~-~--------------~~~~~~~-----------~~~~--------------- 818 (954)
.+.. +... . ...|... ..+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (293)
T 1mtz_A 142 NRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIK 221 (293)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTT
T ss_pred HHHHHhcCHHHHHHHHHhhccCCcChHHHHHHHHHHHHhhcccccCchHHHHHhHhhhccchhhhhccCcceeccccccc
Confidence 0000 0000 0 0000000 0010
Q ss_pred hcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 819 EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 819 ~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
..+....+.++++|+|+++|++| .++ +..++++.+.+. ++++++++++||... .+..+.+.+.+.+||.++
T Consensus 222 ~~~~~~~l~~i~~P~lii~G~~D-~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~~ 292 (293)
T 1mtz_A 222 DWDITDKISAIKIPTLITVGEYD-EVT--PNVARVIHEKIA----GSELHVFRDCSHLTM-WEDREGYNKLLSDFILKH 292 (293)
T ss_dssp TCBCTTTGGGCCSCEEEEEETTC-SSC--HHHHHHHHHHST----TCEEEEETTCCSCHH-HHSHHHHHHHHHHHHHTC
T ss_pred CCChhhhhccCCCCEEEEeeCCC-CCC--HHHHHHHHHhCC----CceEEEeCCCCCCcc-ccCHHHHHHHHHHHHHhc
Confidence 01112345567899999999999 666 777777777653 358999999999864 456778889999999765
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-13 Score=151.47 Aligned_cols=264 Identities=10% Similarity=0.070 Sum_probs=165.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++|+..+.+ +.|.+|+..+ + .....+.. ...
T Consensus 66 ~V~~~~~s~d~~~l~s~s~D---------------------------------g~v~vWd~~~-~--~~~~~~~~--~~~ 107 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQD---------------------------------GKVIVWDSFT-T--NKEHAVTM--PCT 107 (354)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SEEEEEETTT-C--CEEEEEEC--SSS
T ss_pred eEEEEEECCCCCEEEEEeCC---------------------------------CeEEEEECCC-C--CcceEEec--CCC
Confidence 46789999999999998876 5799999854 2 22333332 223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc-------eeecccCCCccccccccceeEecCCeEEEEEe
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-------ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~-------~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (954)
.+...+|||||+.|+... . ...+.++++..+. ...+..+.. .+..+.|+||++.|+...
T Consensus 108 ~v~~~~~sp~g~~lasg~-------~--d~~i~v~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~t~s 173 (354)
T 2pbi_B 108 WVMACAYAPSGCAIACGG-------L--DNKCSVYPLTFDKNENMAAKKKSVAMHTN-----YLSACSFTNSDMQILTAS 173 (354)
T ss_dssp CCCEEEECTTSSEEEEES-------T--TSEEEEEECCCCTTCCSGGGCEEEEECSS-----CEEEEEECSSSSEEEEEE
T ss_pred CEEEEEECCCCCEEEEee-------C--CCCEEEEEEeccccccccccceeeeccCC-----cEEEEEEeCCCCEEEEEe
Confidence 688899999999988753 3 3344455543321 111211111 266889999999888661
Q ss_pred cCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-cccccccc
Q 002194 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDP 339 (954)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~-~~~~~~~~ 339 (954)
....|.++|+ +|+. ..+... ..+...+|
T Consensus 174 -------------------------------------------------~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~ 204 (354)
T 2pbi_B 174 -------------------------------------------------GDGTCALWDVESGQLLQSFHGHGADVLCLDL 204 (354)
T ss_dssp -------------------------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred -------------------------------------------------CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEE
Confidence 2234667788 6653 334333 55666666
Q ss_pred CC--CCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002194 340 SP--DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 340 Sp--DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~ 416 (954)
+| +|+.|+..+.+ +.+.+||+..++. ..+..+ ...+..++|+|||+.++..
T Consensus 205 ~~~~~g~~l~sgs~D-------------g~v~~wd~~~~~~~~~~~~h-------------~~~v~~v~~~p~~~~l~s~ 258 (354)
T 2pbi_B 205 APSETGNTFVSGGCD-------------KKAMVWDMRSGQCVQAFETH-------------ESDVNSVRYYPSGDAFASG 258 (354)
T ss_dssp CCCSSCCEEEEEETT-------------SCEEEEETTTCCEEEEECCC-------------SSCEEEEEECTTSSEEEEE
T ss_pred EeCCCCCEEEEEeCC-------------CeEEEEECCCCcEEEEecCC-------------CCCeEEEEEeCCCCEEEEE
Confidence 66 67888887743 3899999986543 333322 1345689999999866554
Q ss_pred EEeccCCCccccccCCCeEEEEecCCCCCCCce-EEeec--ccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCC
Q 002194 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKL--DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV 493 (954)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~-~l~~~--~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~ 493 (954)
+..+.|.+|++ ..+... .+... ...+..++|+|||+.|+....+.. |.++|+.++
T Consensus 259 -------------s~D~~v~lwd~---~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~----i~vwd~~~~-- 316 (354)
T 2pbi_B 259 -------------SDDATCRLYDL---RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT----INVWDVLKG-- 316 (354)
T ss_dssp -------------ETTSCEEEEET---TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC----EEEEETTTC--
T ss_pred -------------eCCCeEEEEEC---CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc----EEEEECCCC--
Confidence 34557889986 333222 22221 123457899999999888765433 455565554
Q ss_pred CcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 494 APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 494 ~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
........+...+.. ++|+|||++|+...
T Consensus 317 ~~~~~l~~h~~~v~~------l~~spdg~~l~sgs 345 (354)
T 2pbi_B 317 SRVSILFGHENRVST------LRVSPDGTAFCSGS 345 (354)
T ss_dssp SEEEEECCCSSCEEE------EEECTTSSCEEEEE
T ss_pred ceEEEEECCCCcEEE------EEECCCCCEEEEEc
Confidence 233333344444444 88999999998876
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.5e-15 Score=166.02 Aligned_cols=225 Identities=12% Similarity=0.012 Sum_probs=144.0
Q ss_pred CceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcE-
Q 002194 637 LQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA- 714 (954)
Q Consensus 637 ~~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~- 714 (954)
.+.+.+++.+. .|..+.+++|+|++++ +.++|+|+++||+.+. .. .........|+++|++
T Consensus 166 G~v~~~~~~S~~~g~~~~~~vy~P~~~~---~~~~PvlvllHG~~~~--------~~------~~~~~~~~~l~~~g~~~ 228 (403)
T 3c8d_A 166 IPAKEIIWKSERLKNSRRVWIFTTGDVT---AEERPLAVLLDGEFWA--------QS------MPVWPVLTSLTHRQQLP 228 (403)
T ss_dssp SCCEEEEEEETTTTEEEEEEEEEC--------CCCCEEEESSHHHHH--------HT------SCCHHHHHHHHHTTSSC
T ss_pred CceEEEEEEccccCCcEEEEEEeCCCCC---CCCCCEEEEeCCHHHh--------hc------CcHHHHHHHHHHcCCCC
Confidence 45678888775 6789999999998764 2359999999995211 10 0012356678888875
Q ss_pred ---EEEcCCCCCCCCCCccc-chhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEE
Q 002194 715 ---ILGGPTTPIIGEGDEEA-NDRFVEQLVACAEAAVEEVVRRG--VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (954)
Q Consensus 715 ---V~~~~~~~~~G~G~~~~-~~~~~~~~~~D~~~av~~l~~~~--~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (954)
|+.+++.+..++..... ...+.....+ +++.++.++. ..|+++++|+|+||||++|+.++.++|++|++++
T Consensus 229 p~iVV~~d~~~~~~r~~~~~~~~~~~~~l~~---el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~ 305 (403)
T 3c8d_A 229 PAVYVLIDAIDTTHRAHELPCNADFWLAVQQ---ELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVL 305 (403)
T ss_dssp SCEEEEECCCSHHHHHHHSSSCHHHHHHHHH---THHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEE
T ss_pred CeEEEEECCCCCccccccCCChHHHHHHHHH---HHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEE
Confidence 88765532111100000 1112222222 4556666653 3588999999999999999999999999999999
Q ss_pred EeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002194 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (954)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (954)
+++|.+.+.... -. ...... +.+.. . .......|+||+||+.|..+ ..++++++++|+..|+++++.
T Consensus 306 ~~sg~~~~~~~~--~~-~~~~~~---~~~~~-~---~~~~~~~~i~l~~G~~D~~~---~~~~~~l~~~L~~~G~~v~~~ 372 (403)
T 3c8d_A 306 SQSGSYWWPHRG--GQ-QEGVLL---EKLKA-G---EVSAEGLRIVLEAGIREPMI---MRANQALYAQLHPIKESIFWR 372 (403)
T ss_dssp EESCCTTTTCTT--SS-SCCHHH---HHHHT-T---SSCCCSCEEEEEEESSCHHH---HHHHHHHHHHTGGGTTSEEEE
T ss_pred EeccccccCCCC--CC-cHHHHH---HHHHh-c---cccCCCceEEEEeeCCCchh---HHHHHHHHHHHHhCCCCEEEE
Confidence 999976532110 00 001111 11111 1 12345678999999998653 688999999999999999999
Q ss_pred EeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 869 ILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 869 ~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
+||| +|.+. .....+...+.||.+..
T Consensus 373 ~~~G-gH~~~---~w~~~l~~~l~~l~~~~ 398 (403)
T 3c8d_A 373 QVDG-GHDAL---CWRGGLMQGLIDLWQPL 398 (403)
T ss_dssp EESC-CSCHH---HHHHHHHHHHHHHHGGG
T ss_pred EeCC-CCCHH---HHHHHHHHHHHHHhccc
Confidence 9999 69752 23345666777876653
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-14 Score=154.27 Aligned_cols=210 Identities=15% Similarity=0.096 Sum_probs=137.4
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+++...+-|+ + .|.||++||.+... ..|....+..|+++||.|++ .|.+|+
T Consensus 8 ~~g~~l~y~~~G~~------~--~~~vvllHG~~~~~--------------~~w~~~~~~~L~~~G~~vi~---~D~rG~ 62 (298)
T 1q0r_A 8 SGDVELWSDDFGDP------A--DPALLLVMGGNLSA--------------LGWPDEFARRLADGGLHVIR---YDHRDT 62 (298)
T ss_dssp ETTEEEEEEEESCT------T--SCEEEEECCTTCCG--------------GGSCHHHHHHHHTTTCEEEE---ECCTTS
T ss_pred cCCeEEEEEeccCC------C--CCeEEEEcCCCCCc--------------cchHHHHHHHHHhCCCEEEe---eCCCCC
Confidence 57888887766432 1 36799999964211 11122234678889999999 667788
Q ss_pred CCccc--c---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCC-CC----
Q 002194 727 GDEEA--N---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY-NR---- 796 (954)
Q Consensus 727 G~~~~--~---~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~-~~---- 796 (954)
|.+.. + ........+|+.+.++.+ +.+++.++||||||.+++.++.++|++++++|++++.. ..
T Consensus 63 G~S~~~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~ 136 (298)
T 1q0r_A 63 GRSTTRDFAAHPYGFGELAADAVAVLDGW------GVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDA 136 (298)
T ss_dssp TTSCCCCTTTSCCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHH
T ss_pred CCCCCCCCCcCCcCHHHHHHHHHHHHHHh------CCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccCCCccccc
Confidence 88764 1 123556677777777765 34589999999999999999999999999999987644 21
Q ss_pred -------------CCCCCC------C-c----cccc------------------hhhhcH-------HHHHhc-------
Q 002194 797 -------------TLTPFG------F-Q----NEDR------------------TLWEAT-------STYVEM------- 820 (954)
Q Consensus 797 -------------~~~~~~------~-~----~~~~------------------~~~~~~-------~~~~~~------- 820 (954)
...... + . .... ..+... ..+...
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (298)
T 1q0r_A 137 NIERVMRGEPTLDGLPGPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEP 216 (298)
T ss_dssp HHHHHHHTCCCSSCSCCCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCC
T ss_pred chhhhhhhhhhhcccccccHHHHHHHhccCcccccHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHhhccCCccchh
Confidence 000000 0 0 0000 000000 000000
Q ss_pred ----------Ccccc-cCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHH
Q 002194 821 ----------SPFMS-ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889 (954)
Q Consensus 821 ----------sp~~~-~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~ 889 (954)
+.... +.++++|+|+++|++|..+| +..++++.+.+. ..+++++|++||.. ...+.+.
T Consensus 217 ~~~~~~~~~~~~~~~~l~~i~~P~Lvi~G~~D~~~~--~~~~~~~~~~~p----~~~~~~i~~~gHe~-----p~~~~~~ 285 (298)
T 1q0r_A 217 YAHYSLTLPPPSRAAELREVTVPTLVIQAEHDPIAP--APHGKHLAGLIP----TARLAEIPGMGHAL-----PSSVHGP 285 (298)
T ss_dssp CGGGGCCCCCGGGGGGGGGCCSCEEEEEETTCSSSC--TTHHHHHHHTST----TEEEEEETTCCSSC-----CGGGHHH
T ss_pred hhhhhhhcCcccccccccccCCCEEEEEeCCCccCC--HHHHHHHHHhCC----CCEEEEcCCCCCCC-----cHHHHHH
Confidence 01123 66789999999999999998 888777766543 46999999999932 2467788
Q ss_pred HHHHHHHhc
Q 002194 890 TDRWLQKYC 898 (954)
Q Consensus 890 i~~fl~~~l 898 (954)
+.+||.+++
T Consensus 286 i~~fl~~~~ 294 (298)
T 1q0r_A 286 LAEVILAHT 294 (298)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998875
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.8e-15 Score=155.64 Aligned_cols=202 Identities=13% Similarity=0.130 Sum_probs=130.0
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.++.+..+.|++ .|+||++||++.... .| ......|+++||.|++ .+..|+
T Consensus 11 ~~g~~l~~~~~g~~~--------~~~vv~~hG~~~~~~-----------~~----~~~~~~l~~~G~~v~~---~d~~G~ 64 (286)
T 3qit_A 11 FGGNQICLCSWGSPE--------HPVVLCIHGILEQGL-----------AW----QEVALPLAAQGYRVVA---PDLFGH 64 (286)
T ss_dssp ETTEEEEEEEESCTT--------SCEEEEECCTTCCGG-----------GG----HHHHHHHHHTTCEEEE---ECCTTS
T ss_pred cCCceEEEeecCCCC--------CCEEEEECCCCcccc-----------hH----HHHHHHhhhcCeEEEE---ECCCCC
Confidence 588999988886432 578999999742211 11 2456778899999999 566677
Q ss_pred CCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCC
Q 002194 727 GDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 802 (954)
Q Consensus 727 G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~ 802 (954)
|.+.... .......+|+.++++.+ +.+++.++|||+||.+++.++.++|++++++|++++..........
T Consensus 65 G~s~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 138 (286)
T 3qit_A 65 GRSSHLEMVTSYSSLTFLAQIDRVIQEL------PDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKE 138 (286)
T ss_dssp TTSCCCSSGGGCSHHHHHHHHHHHHHHS------CSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCC---C
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhc------CCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCCCccccch
Confidence 7775432 22344455555554443 3468999999999999999999999999999999987553221100
Q ss_pred ---------------------Cccccc---------hhh--hcHHHH---------------------------------
Q 002194 803 ---------------------FQNEDR---------TLW--EATSTY--------------------------------- 817 (954)
Q Consensus 803 ---------------------~~~~~~---------~~~--~~~~~~--------------------------------- 817 (954)
+..... ..+ .....+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (286)
T 3qit_A 139 SAVNQLTTCLDYLSSTPQHPIFPDVATAASRLRQAIPSLSEEFSYILAQRITQPNQGGVRWSWDAIIRTRSILGLNNLPG 218 (286)
T ss_dssp CHHHHHHHHHHHHTCCCCCCCBSSHHHHHHHHHHHSTTSCHHHHHHHHHHTEEEETTEEEECSCGGGGGHHHHTTTSCTT
T ss_pred hhhHHHHHHHHHHhccccccccccHHHHHHHhhcCCcccCHHHHHHHhhccccccccceeeeechhhhcccccccccccc
Confidence 000000 000 000000
Q ss_pred HhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHH
Q 002194 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLW 888 (954)
Q Consensus 818 ~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~ 888 (954)
...+....+.++++|+|+++|++|..+| .+...++.+.+.. ++++++++ ||... .++...+.+
T Consensus 219 ~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~----~~~~~~~g-gH~~~-~e~p~~~~~ 281 (286)
T 3qit_A 219 GRSQYLEMLKSIQVPTTLVYGDSSKLNR--PEDLQQQKMTMTQ----AKRVFLSG-GHNLH-IDAAAALAS 281 (286)
T ss_dssp HHHHHHHHHHHCCSCEEEEEETTCCSSC--HHHHHHHHHHSTT----SEEEEESS-SSCHH-HHTHHHHHH
T ss_pred chhHHHHHHhccCCCeEEEEeCCCcccC--HHHHHHHHHHCCC----CeEEEeeC-CchHh-hhChHHHHH
Confidence 1111222346789999999999999998 8888887776643 48899999 99863 334444433
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=153.47 Aligned_cols=209 Identities=15% Similarity=0.104 Sum_probs=137.3
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (954)
..+|.+++...+ + + .|.||++||.+... ..| ...+..|+++||.|++ .|.+|
T Consensus 9 ~~~g~~l~y~~~---g-----~--g~pvvllHG~~~~~-----------~~~----~~~~~~L~~~g~~vi~---~D~~G 60 (277)
T 1brt_A 9 NSTSIDLYYEDH---G-----T--GQPVVLIHGFPLSG-----------HSW----ERQSAALLDAGYRVIT---YDRRG 60 (277)
T ss_dssp TTEEEEEEEEEE---C-----S--SSEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEE---ECCTT
T ss_pred cCCCcEEEEEEc---C-----C--CCeEEEECCCCCcH-----------HHH----HHHHHHHhhCCCEEEE---eCCCC
Confidence 456777765544 1 1 23488899964211 111 2356678889999999 67778
Q ss_pred CCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC-cccEEEEeccCCCCCCC---
Q 002194 726 EGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLT--- 799 (954)
Q Consensus 726 ~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~~~~~~--- 799 (954)
+|.+..+. .......+|+.+.++.+ +.+++.++||||||.+++.++.++|+ +++++|++++.......
T Consensus 61 ~G~S~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~ 134 (277)
T 1brt_A 61 FGQSSQPTTGYDYDTFAADLNTVLETL------DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDD 134 (277)
T ss_dssp STTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTT
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHh------CCCceEEEEECccHHHHHHHHHHcCcceEEEEEEecCcCcccccccc
Confidence 88886532 23456678888887776 23589999999999999999999998 99999999874321110
Q ss_pred -CCC-Cccc-----------cc-h--------hhh---------cH---HHHH------------------hcCcccccC
Q 002194 800 -PFG-FQNE-----------DR-T--------LWE---------AT---STYV------------------EMSPFMSAN 827 (954)
Q Consensus 800 -~~~-~~~~-----------~~-~--------~~~---------~~---~~~~------------------~~sp~~~~~ 827 (954)
+.. .... .. . .+. .. +.+. ..+....+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (277)
T 1brt_A 135 NPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIP 214 (277)
T ss_dssp BTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGG
T ss_pred CccccccHHHHHHHHHHHhcCchhhHHHHHHHHhhccccccccCCHHHHHHHHHHHhccchHHHHHHHHHHhccchhhcc
Confidence 000 0000 00 0 000 00 0000 112223456
Q ss_pred CCCCCEEEEEeCCCCCCCCchHHH-HHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 828 KLKKPILLVHGEEDNNSGTLTMQS-DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 828 ~~~~P~Lii~G~~D~~v~~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
++++|+|+++|++|..+| ++.+ +.+.+.+. +.+++++|++||... .+..+.+.+.|.+||.
T Consensus 215 ~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 276 (277)
T 1brt_A 215 RIDVPALILHGTGDRTLP--IENTARVFHKALP----SAEYVEVEGAPHGLL-WTHAEEVNTALLAFLA 276 (277)
T ss_dssp GCCSCEEEEEETTCSSSC--GGGTHHHHHHHCT----TSEEEEETTCCTTHH-HHTHHHHHHHHHHHHH
T ss_pred cCCCCeEEEecCCCccCC--hHHHHHHHHHHCC----CCcEEEeCCCCcchh-hhCHHHHHHHHHHHHh
Confidence 789999999999999998 7877 77766654 248899999999864 4567788888999885
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-13 Score=149.51 Aligned_cols=261 Identities=11% Similarity=0.086 Sum_probs=167.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++|+....+ +.|.+|++.+ + ...+.+.. ...
T Consensus 15 ~V~~~~fsp~~~~l~s~~~d---------------------------------g~v~lWd~~~-~--~~~~~~~~--~~~ 56 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYS---------------------------------GRVELWNYET-Q--VEVRSIQV--TET 56 (304)
T ss_dssp CEEEEEECSSSSEEEEEETT---------------------------------SEEEEEETTT-T--EEEEEEEC--CSS
T ss_pred ceEEEEECCCCCEEEEEcCC---------------------------------CcEEEEECCC-C--ceeEEeec--cCC
Confidence 56789999999999998876 5799999854 1 12333432 223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....|+|||++|+.... ...|.++|+++++........... +..++|+||++.|+...
T Consensus 57 ~v~~~~~~~~~~~l~s~s~---------d~~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~sgs------- 116 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGSD---------DFRIRVFNYNTGEKVVDFEAHPDY----IRSIAVHPTKPYVLSGS------- 116 (304)
T ss_dssp CEEEEEEEGGGTEEEEEET---------TSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSSSEEEEEE-------
T ss_pred cEEEEEEeCCCCEEEEECC---------CCEEEEEECCCCcEEEEEeCCCCc----EEEEEEcCCCCEEEEEC-------
Confidence 6788899999999988652 567888898887765443333322 77899999999888661
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-cee-EcCCC-ccccccccCC-CCc
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVK-EIGPP-AVYTSLDPSP-DEK 344 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~-~l~~~-~~~~~~~~Sp-DGk 344 (954)
....|.++|+ ++ ... .+... ..+..++|+| |++
T Consensus 117 ------------------------------------------~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 154 (304)
T 2ynn_A 117 ------------------------------------------DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154 (304)
T ss_dssp ------------------------------------------TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT
T ss_pred ------------------------------------------CCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC
Confidence 1234666777 55 333 33333 6778899999 677
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeecc--CCCCceEEEEecc
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRS--DKPSTLYWAETQD 421 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wsp--Dg~~i~~~~~~~~ 421 (954)
.|+..+.+ +.+.+||+..... ..+... ...++..+.|+| |++.++..
T Consensus 155 ~l~sgs~D-------------~~v~iwd~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~l~s~----- 204 (304)
T 2ynn_A 155 TFASGCLD-------------RTVKVWSLGQSTPNFTLTTG------------QERGVNYVDYYPLPDKPYMITA----- 204 (304)
T ss_dssp EEEEEETT-------------SEEEEEETTCSSCSEEEECC------------CTTCEEEEEECCSTTCCEEEEE-----
T ss_pred EEEEEeCC-------------CeEEEEECCCCCccceeccC------------CcCcEEEEEEEEcCCCCEEEEE-----
Confidence 88777633 3899999974432 222211 112334567776 55544433
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecC
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 501 (954)
+..+.|.+|++ .++.....+..+...+..++|+|+++.|+..+.++. |.++|+.++ +.......
T Consensus 205 --------s~D~~i~iWd~--~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~----i~iWd~~~~--~~~~~~~~ 268 (304)
T 2ynn_A 205 --------SDDLTIKIWDY--QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT----LKIWNSSTY--KVEKTLNV 268 (304)
T ss_dssp --------ETTSEEEEEET--TTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC----EEEEETTTC--CEEEEECC
T ss_pred --------cCCCeEEEEeC--CCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCe----EEEEECCCC--ceeeeccC
Confidence 34568999996 233334555666777888999999998887765543 444456554 22333333
Q ss_pred CCCCccCCCCCCCeeeccCCc
Q 002194 502 SSEDVYSDPGSPMMRRTSTGT 522 (954)
Q Consensus 502 ~~~~~~~~~~~~~~~~spdG~ 522 (954)
....+.. ++|+|+|.
T Consensus 269 ~~~~~~~------~~~~~~~~ 283 (304)
T 2ynn_A 269 GLERSWC------IATHPTGR 283 (304)
T ss_dssp SSSSEEE------EEECTTCG
T ss_pred CCccEEE------EEECCCCC
Confidence 3333333 67888885
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-14 Score=157.72 Aligned_cols=249 Identities=13% Similarity=0.113 Sum_probs=152.4
Q ss_pred ceEEEEEEcCC--Ce--EEEEEEEcCCCCCCCCCCCccEEEEECCCCCc--CcccCccccCCCCC-C---CCcccHHHHH
Q 002194 638 QKELIKYQRKD--GV--QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFK--SKDAAGQVRGSPNE-F---PRIGSTSVLL 707 (954)
Q Consensus 638 ~~~~~~~~~~~--g~--~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~--~~~~~~~~~~~~~~-~---~~~~~~~~~~ 707 (954)
...++.|.+.| |. .+.+.++.|.+.. .+.|+|.|.||-... ...++-....+... . ..+.......
T Consensus 74 ~a~ri~Y~std~~G~p~~~~gtv~~P~~~~----~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~~~ 149 (462)
T 3guu_A 74 ASFQLQYRTTNTQNEAVADVATVWIPAKPA----SPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPIIIG 149 (462)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEECSSCC----SSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHHHH
T ss_pred eEEEEEEEEECCCCCEEEEEEEEEecCCCC----CCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHHHH
Confidence 56677776654 54 4889999998632 248999999995311 11111111110000 0 0111234556
Q ss_pred H-HHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC----C
Q 002194 708 W-LARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP----H 782 (954)
Q Consensus 708 l-a~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p----~ 782 (954)
| +++||+|+. .|+.|.|............+.|.++++..+. +.-...+++++|||+||.++++++...| +
T Consensus 150 ~~l~~G~~Vv~---~Dy~G~G~~y~~~~~~~~~vlD~vrAa~~~~--~~~~~~~v~l~G~S~GG~aal~aa~~~~~yape 224 (462)
T 3guu_A 150 WALQQGYYVVS---SDHEGFKAAFIAGYEEGMAILDGIRALKNYQ--NLPSDSKVALEGYSGGAHATVWATSLAESYAPE 224 (462)
T ss_dssp HHHHTTCEEEE---ECTTTTTTCTTCHHHHHHHHHHHHHHHHHHT--TCCTTCEEEEEEETHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhCCCEEEE---ecCCCCCCcccCCcchhHHHHHHHHHHHHhc--cCCCCCCEEEEeeCccHHHHHHHHHhChhhcCc
Confidence 7 899999999 5555666554433332334445555554443 2212479999999999999999887543 3
Q ss_pred -cccEEEEeccCCCCCCC-------C------------------C------CCccc----------c-------------
Q 002194 783 -LFCCGIARSGAYNRTLT-------P------------------F------GFQNE----------D------------- 807 (954)
Q Consensus 783 -~~~a~v~~~~~~~~~~~-------~------------------~------~~~~~----------~------------- 807 (954)
.++++++.++.+|.... . + .+... .
T Consensus 225 l~~~g~~~~~~p~dl~~~~~~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~~lt~~g~~~~~~~~~~~~C~~~~~~~~~~ 304 (462)
T 3guu_A 225 LNIVGASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCLPQVVLTYPF 304 (462)
T ss_dssp SEEEEEEEESCCCBHHHHHHHHTTSTTHHHHHHHHHHHHHHCHHHHHHHHTTBCHHHHHHHHHHTSTTCCHHHHHHHCTT
T ss_pred cceEEEEEecCCCCHHHHHHHhccchhHHHHHHHHHhHHhhCcchhHHHHHHhCHHHHHHHHHHHhcCcchHHHHHhhcc
Confidence 58888888876652100 0 0 00000 0
Q ss_pred ---------chhhhc---HHHHHhcCccc-----ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEe
Q 002194 808 ---------RTLWEA---TSTYVEMSPFM-----SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 870 (954)
Q Consensus 808 ---------~~~~~~---~~~~~~~sp~~-----~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~ 870 (954)
..+... .+.+.++..-. .-.+.++|+||+||++|.+|| +.++++++++++..|.+++++.|
T Consensus 305 ~~~~~~~~~~~~~~~p~~~~~l~~~~lg~~~~~~g~~~~~~PvlI~hG~~D~vVP--~~~s~~l~~~l~~~G~~V~~~~y 382 (462)
T 3guu_A 305 LNVFSLVNDTNLLNEAPIASILKQETVVQAEASYTVSVPKFPRFIWHAIPDEIVP--YQPAATYVKEQCAKGANINFSPY 382 (462)
T ss_dssp CCGGGGBSCTTGGGSTTHHHHHHHSBCCTTTCSSCCCCCCSEEEEEEETTCSSSC--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCHHHHcCCCccccCHHHHHHHHhhcccccccccCCCCCCCCEEEEeCCCCCcCC--HHHHHHHHHHHHHcCCCeEEEEE
Confidence 000000 01111111100 123567899999999999999 99999999999999999999999
Q ss_pred CCCCCcCCCcccHHHHHHHHHHHHHHhcccC
Q 002194 871 PFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 871 ~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (954)
++++|.... ...+..+++||++++...
T Consensus 383 ~~~~H~~~~----~~~~~d~l~WL~~r~~G~ 409 (462)
T 3guu_A 383 PIAEHLTAE----IFGLVPSLWFIKQAFDGT 409 (462)
T ss_dssp SSCCHHHHH----HHTHHHHHHHHHHHHHTC
T ss_pred CcCCccCch----hhhHHHHHHHHHHHhCCC
Confidence 999998642 123678899999998754
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-14 Score=151.62 Aligned_cols=211 Identities=16% Similarity=0.148 Sum_probs=139.0
Q ss_pred EEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC
Q 002194 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (954)
+...+|.+++...+-+. ..|+||++||..... ..| . .....| +++|.|++ .|.
T Consensus 9 ~~~~~g~~l~y~~~G~~--------~~p~lvl~hG~~~~~-----------~~w---~-~~~~~L-~~~~~vi~---~D~ 61 (266)
T 3om8_A 9 LATSDGASLAYRLDGAA--------EKPLLALSNSIGTTL-----------HMW---D-AQLPAL-TRHFRVLR---YDA 61 (266)
T ss_dssp EECTTSCEEEEEEESCT--------TSCEEEEECCTTCCG-----------GGG---G-GGHHHH-HTTCEEEE---ECC
T ss_pred EeccCCcEEEEEecCCC--------CCCEEEEeCCCccCH-----------HHH---H-HHHHHh-hcCcEEEE---EcC
Confidence 45679999987776432 158899999964211 112 1 223344 45899999 677
Q ss_pred CCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC-
Q 002194 724 IGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP- 800 (954)
Q Consensus 724 ~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~- 800 (954)
+|+|.+.... .......+|+.+.++.+ ..+++.++||||||.+++.++.++|++++++|++++........
T Consensus 62 rG~G~S~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~~ 135 (266)
T 3om8_A 62 RGHGASSVPPGPYTLARLGEDVLELLDAL------EVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQ 135 (266)
T ss_dssp TTSTTSCCCCSCCCHHHHHHHHHHHHHHT------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchhH
Confidence 7888886432 23456677777776665 23589999999999999999999999999999987642211000
Q ss_pred C-----------CCcccc--------chhh--------hc---------H-------HHHHhcCcccccCCCCCCEEEEE
Q 002194 801 F-----------GFQNED--------RTLW--------EA---------T-------STYVEMSPFMSANKLKKPILLVH 837 (954)
Q Consensus 801 ~-----------~~~~~~--------~~~~--------~~---------~-------~~~~~~sp~~~~~~~~~P~Lii~ 837 (954)
+ ...... ...+ +. . ..+...+....+.++++|+|+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lvi~ 215 (266)
T 3om8_A 136 WDERIAAVLQAEDMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIA 215 (266)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHSCHHHHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTTTGGGCCSCEEEEE
T ss_pred HHHHHHHHHccccHHHHHHHHHHHhcChhhhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhhHhcCCCCCEEEEE
Confidence 0 000000 0000 00 0 00111122335677899999999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
|++|..+| +..++.+.+.+.. .++++++ +||.. ..+..+.+.+.+.+||.
T Consensus 216 G~~D~~~~--~~~~~~l~~~ip~----a~~~~i~-~gH~~-~~e~p~~~~~~i~~Fl~ 265 (266)
T 3om8_A 216 GAYDTVTA--ASHGELIAASIAG----ARLVTLP-AVHLS-NVEFPQAFEGAVLSFLG 265 (266)
T ss_dssp ETTCSSSC--HHHHHHHHHHSTT----CEEEEES-CCSCH-HHHCHHHHHHHHHHHHT
T ss_pred eCCCCCCC--HHHHHHHHHhCCC----CEEEEeC-CCCCc-cccCHHHHHHHHHHHhc
Confidence 99999998 8888888877654 3888888 69976 46777888888888874
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=154.02 Aligned_cols=197 Identities=15% Similarity=0.125 Sum_probs=131.0
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~a 746 (954)
.|+||++||.+... ..| ......| +++|.|++ .|.+|+|.+.... .......+|+.+.
T Consensus 15 ~~~vvllHG~~~~~-----------~~w----~~~~~~L-~~~~~vi~---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~ 75 (268)
T 3v48_A 15 APVVVLISGLGGSG-----------SYW----LPQLAVL-EQEYQVVC---YDQRGTGNNPDTLAEDYSIAQMAAELHQA 75 (268)
T ss_dssp CCEEEEECCTTCCG-----------GGG----HHHHHHH-HTTSEEEE---CCCTTBTTBCCCCCTTCCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCccH-----------HHH----HHHHHHH-hhcCeEEE---ECCCCCCCCCCCccccCCHHHHHHHHHHH
Confidence 58899999963211 111 1233334 56899999 7778888885431 2345556666665
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC-CCCcc--------------c-----
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-FGFQN--------------E----- 806 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-~~~~~--------------~----- 806 (954)
++.+ +.+++.++||||||.+++.++.++|++++++|++++........ ..+.. .
T Consensus 76 l~~l------~~~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (268)
T 3v48_A 76 LVAA------GIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLF 149 (268)
T ss_dssp HHHT------TCCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHc------CCCCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhh
Confidence 5543 23589999999999999999999999999999988743211000 00000 0
Q ss_pred -cchhhh--------------------------cHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHH
Q 002194 807 -DRTLWE--------------------------ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (954)
Q Consensus 807 -~~~~~~--------------------------~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~ 859 (954)
....|. ....+...+....+.++++|+|+++|++|..+| ...++++.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p--~~~~~~l~~~~p 227 (268)
T 3v48_A 150 LYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVP--TACSSELHAALP 227 (268)
T ss_dssp HSCHHHHHTTHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGGGCCSCEEEEEETTCSSSC--THHHHHHHHHCS
T ss_pred cCchhhhhcccccchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhhcCCCCeEEEEeCCCcccC--HHHHHHHHHhCC
Confidence 000000 000111222334567889999999999999998 888888877654
Q ss_pred hCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 860 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
..++++++++||.. ..+..+.+.+.|.+||.+.+
T Consensus 228 ----~~~~~~~~~~GH~~-~~e~p~~~~~~i~~fl~~~~ 261 (268)
T 3v48_A 228 ----DSQKMVMPYGGHAC-NVTDPETFNALLLNGLASLL 261 (268)
T ss_dssp ----SEEEEEESSCCTTH-HHHCHHHHHHHHHHHHHHHH
T ss_pred ----cCeEEEeCCCCcch-hhcCHHHHHHHHHHHHHHhc
Confidence 35889999999986 46778889999999998764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-13 Score=150.28 Aligned_cols=300 Identities=10% Similarity=0.049 Sum_probs=164.6
Q ss_pred CCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechh
Q 002194 216 SSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTF 295 (954)
Q Consensus 216 ~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 295 (954)
+....+|.+|.++|+...+...... .....++|+|||+ |+++... .
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~---~~p~~~a~spdg~-l~~~~~~--------------------~---------- 60 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAAT---QNPTYLALSAKDC-LYSVDKE--------------------D---------- 60 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEEC---SCCCCEEECTTCE-EEEEEEE--------------------T----------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeecc---CCcceEEEccCCe-EEEEEec--------------------C----------
Confidence 3456678888888877664322111 1145799999999 6655100 0
Q ss_pred hhhccCccccccccccccceEEEEEe-CCceeEcCC---C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEE
Q 002194 296 QDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP---P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (954)
Q Consensus 296 ~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~---~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l 370 (954)
....|+++++ +|+.+.+.. . .....++|||||++|++..... +.+.+
T Consensus 61 ----------------~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~------------~~v~v 112 (347)
T 3hfq_A 61 ----------------DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK------------GTAEV 112 (347)
T ss_dssp ----------------TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTT------------TEEEE
T ss_pred ----------------CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC------------CEEEE
Confidence 1346888888 776555543 2 5567789999999998887332 37889
Q ss_pred Eecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCce
Q 002194 371 WTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE 449 (954)
Q Consensus 371 ~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~ 449 (954)
|+++ ++..+.+.........|. .......+..++|+|||+ +++. . ...+.|++|++ ..+++..
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~spdg~-l~v~-~-----------~~~~~v~~~~~--~~~g~~~ 176 (347)
T 3hfq_A 113 MKIAADGALTLTDTVQHSGHGPR-PEQDGSHIHYTDLTPDNR-LAVI-D-----------LGSDKVYVYNV--SDAGQLS 176 (347)
T ss_dssp EEECTTSCEEEEEEEECCCCCSS-TTCSSCCEEEEEECTTSC-EEEE-E-----------TTTTEEEEEEE--CTTSCEE
T ss_pred EEeCCCCCeeecceeecCCCCCC-ccccCCCceEEEECCCCc-EEEE-e-----------CCCCEEEEEEE--CCCCcEE
Confidence 9985 334443332211110110 000011234689999999 4332 2 12457888886 2244444
Q ss_pred EEeec----ccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE--ecCCCCCccCCCCCCCeeeccCCcE
Q 002194 450 ILHKL----DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL--FDRSSEDVYSDPGSPMMRRTSTGTY 523 (954)
Q Consensus 450 ~l~~~----~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~spdG~~ 523 (954)
.+... ......++|+|||++|++....++ ...+|.++..++ +...+ ................++|||||++
T Consensus 177 ~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~-~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 177 EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSS-QIASLKYDTQTG--AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTTT-EEEEEEEETTTT--EEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCC-EEEEEEecCCCC--ceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 33211 113456899999998887654443 356777766444 22222 1111110000000011789999998
Q ss_pred EEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECC-CCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEE
Q 002194 524 VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN-TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSK 602 (954)
Q Consensus 524 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 602 (954)
|+..... ...|.+|+++ +|+.+.+...... -..-...+|||||+++++..
T Consensus 254 l~v~~~~--------------------~~~v~v~~~~~~g~~~~~~~~~~~---------~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 254 LYVSNRG--------------------YNTLAVFAVTADGHLTLIQQISTE---------GDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp EEEEEET--------------------TTEEEEEEECGGGCEEEEEEEECS---------SSCCCEEEECTTSSEEEEEE
T ss_pred EEEEeCC--------------------CCEEEEEEECCCCcEEEeEEEecC---------CCCcCeEEECCCCCEEEEEE
Confidence 8766521 2348888876 3344433221110 00011357999999877655
Q ss_pred ecCCCCceEEEEECCCCceeEeec
Q 002194 603 ESKTENTQYYIQSWPDKKSCQITD 626 (954)
Q Consensus 603 ~s~~~p~~l~~~~~~~g~~~~Lt~ 626 (954)
.... .-.+|.++..+|+.+.+..
T Consensus 305 ~~~~-~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 305 QNTD-NATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp TTTT-EEEEEEECTTTCCEEEEEE
T ss_pred cCCC-cEEEEEEeCCCCeEEeccc
Confidence 4322 2345555777888776653
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-13 Score=146.29 Aligned_cols=276 Identities=11% Similarity=0.028 Sum_probs=168.8
Q ss_pred ceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhh
Q 002194 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (954)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (954)
...|+++|+.+++.......+... .....++|+|||+.++++..
T Consensus 10 ~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~---------------------------------- 53 (337)
T 1pby_B 10 PDKLVVIDTEKMAVDKVITIADAG--PTPMVPMVAPGGRIAYATVN---------------------------------- 53 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCT--TCCCCEEECTTSSEEEEEET----------------------------------
T ss_pred CCeEEEEECCCCcEEEEEEcCCCC--CCccceEEcCCCCEEEEEeC----------------------------------
Confidence 568999999988776554433310 00457999999998887610
Q ss_pred hccCccccccccccccceEEEEEe-CCcee-EcCCCc------cccccccCCCCcEEEEEeecCCcccccccCC--CCcc
Q 002194 298 LLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPPA------VYTSLDPSPDEKYILISSIHRPYSFIVPCGR--FPRQ 367 (954)
Q Consensus 298 ~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-~l~~~~------~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~--~~~~ 367 (954)
....|+++|+ +|+.. .+.... ....++|||||++|++........ +... ....
T Consensus 54 --------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~---~~~~~~~~~~ 116 (337)
T 1pby_B 54 --------------KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLE---LTHFEVQPTR 116 (337)
T ss_dssp --------------TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEEC---SSCEEECCCE
T ss_pred --------------CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccc---cccccccCce
Confidence 1245888898 77543 333222 567889999999998875221000 0000 1348
Q ss_pred eEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCC
Q 002194 368 VGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG 447 (954)
Q Consensus 368 l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 447 (954)
+++||+++++........ ..+..++|+|||+.+++. .+.|+++++ .+++
T Consensus 117 i~v~d~~~~~~~~~~~~~-------------~~~~~~~~s~dg~~l~~~---------------~~~i~~~d~---~~~~ 165 (337)
T 1pby_B 117 VALYDAETLSRRKAFEAP-------------RQITMLAWARDGSKLYGL---------------GRDLHVMDP---EAGT 165 (337)
T ss_dssp EEEEETTTTEEEEEEECC-------------SSCCCEEECTTSSCEEEE---------------SSSEEEEET---TTTE
T ss_pred EEEEECCCCcEEEEEeCC-------------CCcceeEECCCCCEEEEe---------------CCeEEEEEC---CCCc
Confidence 999999876544322211 234578899999987665 246889996 4444
Q ss_pred ceEEeecccccCceeeccCCceEEEEEecccc--------------------ceEEEEEcCCCCCCCcEEEe-cCCCCCc
Q 002194 448 PEILHKLDLRYGGISWCDDSLALVYESWYKTR--------------------RTRTWVISPGSKDVAPRILF-DRSSEDV 506 (954)
Q Consensus 448 ~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~--------------------~~~l~~~d~~~~~~~~~~l~-~~~~~~~ 506 (954)
.............+.|+|||+.|++....... ...|+++|+.++. ...+. .......
T Consensus 166 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~ 243 (337)
T 1pby_B 166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMREVRIMDVFY 243 (337)
T ss_dssp EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--EEEEEEEECSSCE
T ss_pred EeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC--ceEeecCCCCCce
Confidence 43322222222456899999988665432211 0158899988863 22221 1111111
Q ss_pred cCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCC
Q 002194 507 YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQ 586 (954)
Q Consensus 507 ~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 586 (954)
.+ ++|+|||++++... ..|++||+++++.......... +
T Consensus 244 ~~------~~~s~dg~~l~~~~-----------------------~~v~~~d~~~~~~~~~~~~~~~-----~------- 282 (337)
T 1pby_B 244 FS------TAVNPAKTRAFGAY-----------------------NVLESFDLEKNASIKRVPLPHS-----Y------- 282 (337)
T ss_dssp EE------EEECTTSSEEEEEE-----------------------SEEEEEETTTTEEEEEEECSSC-----C-------
T ss_pred ee------EEECCCCCEEEEeC-----------------------CeEEEEECCCCcCcceecCCCc-----e-------
Confidence 12 78999999887662 1499999998876554443211 1
Q ss_pred ccccccccCCEEEEEEecCCCCceEEEEECCCCceeEe
Q 002194 587 TEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQI 624 (954)
Q Consensus 587 ~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~L 624 (954)
...+|+|||+.+++. + ....++++++.+++....
T Consensus 283 ~~~~~s~dg~~l~~~--~--~~~~i~v~d~~~~~~~~~ 316 (337)
T 1pby_B 283 YSVNVSTDGSTVWLG--G--ALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp CEEEECTTSCEEEEE--S--BSSEEEEEETTTCCEEEE
T ss_pred eeEEECCCCCEEEEE--c--CCCcEEEEECcCCcEEEE
Confidence 125789999977764 2 246799999988875543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.8e-14 Score=168.90 Aligned_cols=265 Identities=9% Similarity=-0.021 Sum_probs=162.9
Q ss_pred cccceeec-CCCCeEEEEEeeccccCCCCceEEEEEECCCC-ceeecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 190 KLNFVTWS-QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-KARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wS-PDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g-~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
....++|| |||++|||+.+.. +++..+||++|+++| +. +... +......+.|||||+.|+|+......
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~----G~~~~~l~v~dl~~g~~~--l~~~----~~~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMS----GNEVYTIEFKRISDPSQT--IADK----VSGTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESS----SSSCEEEEEEETTCTTCC--CCCC----EEEECSCCEECSSTTEEEEEEECTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCC----CCceEEEEEEECCCCCEe--CCcc----ccCceeeEEEecCCCEEEEEEECCCC
Confidence 45779999 9999999998632 445678999999998 62 2111 11114589999999999988221000
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc--eeEcCC--C-ccccccccCC
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGP--P-AVYTSLDPSP 341 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~--~~~l~~--~-~~~~~~~~Sp 341 (954)
...+||++++ ++. .+.+.. . ....++.|||
T Consensus 245 --------------------------------------------~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp 280 (751)
T 2xe4_A 245 --------------------------------------------RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA 280 (751)
T ss_dssp --------------------------------------------CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT
T ss_pred --------------------------------------------CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC
Confidence 1246999999 553 234422 1 4456789999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCc--eE--EEeccCCCcccCCccccccccCccceeeccC---CCCce
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSD---KPSTL 414 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~--~~--~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD---g~~i~ 414 (954)
||++|++.+.... ..+++++|++++ +. +.++... ....|++| |+.++
T Consensus 281 Dg~~l~~~~~~~~----------~~~l~~~d~~~~~~~~~~~~l~~~~----------------~~~~~s~~~~~g~~l~ 334 (751)
T 2xe4_A 281 DTNTLCIGSQSPE----------TAEVHLLDLRKGNAHNTLEIVRPRE----------------KGVRYDVQMHGTSHLV 334 (751)
T ss_dssp TSSEEEEEEECSS----------CEEEEEEESSSCTTCCCEEESSCCC----------------TTCCEEEEEETTTEEE
T ss_pred CCCEEEEEecCCC----------CceEEEEECCCCCCCceeEEeecCC----------------CCceEEEeeeeCCEEE
Confidence 9999999885431 348999999864 34 4444321 23446676 88887
Q ss_pred EEEEeccCCCccccccCCCeEEEEecCCCCC-CCceE-EeecccccCceeeccCCceEEEEEeccccceEEEEEcC----
Q 002194 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQG-EGPEI-LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP---- 488 (954)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g-~~~~~-l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~---- 488 (954)
|..+.. + ..+..|+++++ ++ ++.+. +.....+..-..|+++++.|++....++ ..+|+++++
T Consensus 335 ~~t~~~-~-------a~~~~L~~~d~---~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g-~~~l~~~dl~~~~ 402 (751)
T 2xe4_A 335 ILTNEG-G-------AVNHKLLIAPR---GQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAG-LTRIWTMMADSQD 402 (751)
T ss_dssp EEECTT-T-------CTTCEEEEEET---TSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETT-EEEEEEEECCTTT
T ss_pred EEeCCC-C-------CCCcEEEEEcC---CCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCC-EEEEEEEeccccc
Confidence 774332 0 12458999986 33 34344 4433333332345667888988877665 478999996
Q ss_pred ---CCCCCC-cEEEecCCCCCccCCCCCCCeee----ccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECC
Q 002194 489 ---GSKDVA-PRILFDRSSEDVYSDPGSPMMRR----TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN 560 (954)
Q Consensus 489 ---~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~----spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 560 (954)
+++ + ...+.-.......+ +.+ +++++.++|..... ...+.+|.+|++
T Consensus 403 ~~~~~g--~~~~~l~l~~~~~~~~------~~~~~~~~~~~~~l~~~~ss~-----------------~~P~~~~~~d~~ 457 (751)
T 2xe4_A 403 GVFKAG--TGLREVVMEEPIFTVH------LVESQMLEYEEPTFRMEYSSL-----------------ATPNTWFDVSPQ 457 (751)
T ss_dssp SCCCTT--TCCEECCCCCSSCEEE------ECGGGCCCTTCSCEEEEEEET-----------------TEEEEEEEECTT
T ss_pred ccccCC--ccceEECCCCceeEEE------eccCcccCCCCCEEEEEEeCC-----------------CCCCEEEEEECC
Confidence 443 3 34332111100001 212 45777777766321 123469999999
Q ss_pred CCCeEEEeccC
Q 002194 561 TGSKERIWESD 571 (954)
Q Consensus 561 ~g~~~~l~~~~ 571 (954)
+++.+.++...
T Consensus 458 ~~~~~~l~~~~ 468 (751)
T 2xe4_A 458 DHSRTAVKVRE 468 (751)
T ss_dssp TCCEEEEEECC
T ss_pred CCcEEEEeccc
Confidence 99988887544
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-13 Score=158.25 Aligned_cols=294 Identities=13% Similarity=0.111 Sum_probs=174.5
Q ss_pred CCCCceecC-CCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCce-eeeecCCC
Q 002194 110 PLPALSFSP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE-IEIQGFPD 187 (954)
Q Consensus 110 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~-~~lt~~~~ 187 (954)
.+..++|+| +++.||..+.+ +.|.||++.. +.. ..++...+
T Consensus 121 ~V~~l~~~P~~~~~lasGs~d---------------------------------g~i~lWd~~~----~~~~~~~~~~gH 163 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKG---------------------------------GDIMLWNFGI----KDKPTFIKGIGA 163 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETT---------------------------------SCEEEECSSC----CSCCEEECCCSS
T ss_pred CEEEEEEeCCCCCEEEEEeCC---------------------------------CEEEEEECCC----CCceeEEEccCC
Confidence 366789999 56677777665 5899999854 222 22221223
Q ss_pred CCcccceeecC-CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 188 GAKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 188 ~~~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
...+..+.|+| ||+.|+..+ . ...|.++|++++..+.+...... ...+..+.|+|||+.|+...
T Consensus 164 ~~~V~~l~f~p~~~~~l~s~s-------~--D~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~---- 228 (435)
T 4e54_B 164 GGSITGLKFNPLNTNQFYASS-------M--EGTTRLQDFKGNILRVFASSDTI--NIWFCSLDVSASSRMVVTGD---- 228 (435)
T ss_dssp SCCCCEEEECSSCTTEEEEEC-------S--SSCEEEEETTSCEEEEEECCSSC--SCCCCCEEEETTTTEEEEEC----
T ss_pred CCCEEEEEEeCCCCCEEEEEe-------C--CCEEEEeeccCCceeEEeccCCC--CccEEEEEECCCCCEEEEEe----
Confidence 34789999999 677776643 2 34566778887766554433221 11245789999999988761
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeC-CceeEcCCC-ccccccccCCCCc
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD-GTVKEIGPP-AVYTSLDPSPDEK 344 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~-G~~~~l~~~-~~~~~~~~SpDGk 344 (954)
....|.++|++ .....+... ..+..++|+|+++
T Consensus 229 ---------------------------------------------~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 229 ---------------------------------------------NVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp ---------------------------------------------SSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCS
T ss_pred ---------------------------------------------CCCcEeeeccCcceeEEEecccceEEeeeecCCCc
Confidence 12347777884 444445444 7788999999998
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
.++++... ++.|.+||+..... ..+... .++...+..++|+|||+.|+..
T Consensus 264 ~~~~s~s~------------d~~v~iwd~~~~~~~~~~~~~----------~~h~~~v~~~~~spdg~~l~s~------- 314 (435)
T 4e54_B 264 WFLATASV------------DQTVKIWDLRQVRGKASFLYS----------LPHRHPVNAACFSPDGARLLTT------- 314 (435)
T ss_dssp SEEEEEET------------TSBCCEEETTTCCSSSCCSBC----------CBCSSCEEECCBCTTSSEEEEE-------
T ss_pred eEEEEecC------------cceeeEEecccccccceEEEe----------eeccccccceeECCCCCeeEEE-------
Confidence 76665433 23788999875332 111110 1222456788999999977655
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEeeccc------ccCceeeccCCceEEEEEeccc--------cceEEEEEcCC
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL------RYGGISWCDDSLALVYESWYKT--------RRTRTWVISPG 489 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~------~~~~~~~spDg~~l~~~~~~~~--------~~~~l~~~d~~ 489 (954)
+..+.|.+|++ .++.....+..+.. ......|+|++..++.....++ ....|.+++..
T Consensus 315 ------~~D~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~ 386 (435)
T 4e54_B 315 ------DQKSEIRVYSA--SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGN 386 (435)
T ss_dssp ------ESSSCEEEEES--SSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSS
T ss_pred ------cCCCEEEEEEC--CCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECC
Confidence 34567889986 33333444432211 1234678888888877653321 11236667777
Q ss_pred CCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeE
Q 002194 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (954)
Q Consensus 490 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 565 (954)
++. ....+...+...+.. ...|+|||++|+... ...|++||+++|+.+
T Consensus 387 ~g~-~~~~l~~~~~~~v~s-----~~~fspdg~~lasg~----------------------d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 387 SGK-MMCQLYDPESSGISS-----LNEFNPMGDTLASAM----------------------GYHILIWSQQEARTR 434 (435)
T ss_dssp SCC-EEEEECCSSCCCCCC-----EEEECTTSSCEEEEC----------------------SSEEEECCCC-----
T ss_pred CCc-EEEEEeCCCCCcEEE-----EEEECCCCCEEEEEc----------------------CCcEEEEECCcCeee
Confidence 652 122233333333222 136999999887643 124999999988765
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-14 Score=158.11 Aligned_cols=177 Identities=15% Similarity=0.111 Sum_probs=119.7
Q ss_pred HHHCCcEEEEcCCCCCCC--CCCcccc---------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcE-EEEeeChH
Q 002194 708 WLARGFAILGGPTTPIIG--EGDEEAN---------------DRFVEQLVACAEAAVEEVVRRGVAHPSKI-AVGGHSYG 769 (954)
Q Consensus 708 la~~G~~V~~~~~~~~~G--~G~~~~~---------------~~~~~~~~~D~~~av~~l~~~~~~d~~ri-~l~G~S~G 769 (954)
|+++||.|++++ .+| +|.+... ........+|+.++++.+ +.+++ .|+|||||
T Consensus 85 l~~~g~~vi~~D---~~G~~~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~~lvGhS~G 155 (366)
T 2pl5_A 85 FDTNQYFIICSN---VIGGCKGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESL------GIEKLFCVAGGSMG 155 (366)
T ss_dssp EETTTCEEEEEC---CTTCSSSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHT------TCSSEEEEEEETHH
T ss_pred ccccccEEEEec---CCCcccCCCCCCCCCCCCCccccCCCCcccHHHHHHHHHHHHHHc------CCceEEEEEEeCcc
Confidence 457899999944 455 5554321 113455566666665543 34688 79999999
Q ss_pred HHHHHHHHHhCCCcccEEEEeccCCCCCCC----------------CCC---C--------------------cc-----
Q 002194 770 AFMTANLLAHAPHLFCCGIARSGAYNRTLT----------------PFG---F--------------------QN----- 805 (954)
Q Consensus 770 G~~a~~~a~~~p~~~~a~v~~~~~~~~~~~----------------~~~---~--------------------~~----- 805 (954)
|.+++.++.++|++++++|++++....... .+. + ..
T Consensus 156 g~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (366)
T 2pl5_A 156 GMQALEWSIAYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMR 235 (366)
T ss_dssp HHHHHHHHHHSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHH
T ss_pred HHHHHHHHHhCcHhhhheeEeccCccCCCccchhhHHHHHHHHhCcccccccccccccccchHHHHHhhccccCCHHHHH
Confidence 999999999999999999999986432100 000 0 00
Q ss_pred ----------------ccchhhh-----------c-------HHHHHhcCc------ccccCCCCCCEEEEEeCCCCCCC
Q 002194 806 ----------------EDRTLWE-----------A-------TSTYVEMSP------FMSANKLKKPILLVHGEEDNNSG 845 (954)
Q Consensus 806 ----------------~~~~~~~-----------~-------~~~~~~~sp------~~~~~~~~~P~Lii~G~~D~~v~ 845 (954)
.....+. . ...+...+. ...+.++++|+|++||++|..+|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~ 315 (366)
T 2pl5_A 236 EKFGRNPPRGNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYP 315 (366)
T ss_dssp HHHTTSCCSSCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSC
T ss_pred HHhhhhhhcccccchhhhHHHHHHHHHHhhhcccChhHHHHHHhhhhhhccccccchhhhhccCCCCEEEEecCCCcccC
Confidence 0000000 0 011111111 12567889999999999999998
Q ss_pred CchHHHHHHHHHHHhCCCcEEEEEe-CCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 846 TLTMQSDRFFNALKGHGALCRLVIL-PFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 846 ~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
++.++++.+.+...+.+++++++ +++||... .+....+.+.|.+||++
T Consensus 316 --~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~ 364 (366)
T 2pl5_A 316 --PAQSREIVKSLEAADKRVFYVELQSGEGHDSF-LLKNPKQIEILKGFLEN 364 (366)
T ss_dssp --HHHHHHHHHHHHHTTCCEEEEEECCCBSSGGG-GSCCHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHhhhcccCeEEEEeCCCCCcchh-hcChhHHHHHHHHHHcc
Confidence 99999999999987767899999 89999875 34556888889999875
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=154.64 Aligned_cols=206 Identities=15% Similarity=0.099 Sum_probs=130.6
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+++.... + ..|+||++||++... ..|.. ....|++ ||.|++ .+..|+
T Consensus 10 ~~~~~~~y~~~---g-------~~~~vv~~HG~~~~~-----------~~~~~----~~~~L~~-~~~vi~---~d~~G~ 60 (278)
T 3oos_A 10 TPRGKFEYFLK---G-------EGPPLCVTHLYSEYN-----------DNGNT----FANPFTD-HYSVYL---VNLKGC 60 (278)
T ss_dssp ETTEEEEEEEE---C-------SSSEEEECCSSEECC-----------TTCCT----TTGGGGG-TSEEEE---ECCTTS
T ss_pred cCCceEEEEec---C-------CCCeEEEEcCCCcch-----------HHHHH----HHHHhhc-CceEEE---EcCCCC
Confidence 46677765443 1 147899999964221 11221 2234444 999999 666788
Q ss_pred CCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC--
Q 002194 727 GDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-- 800 (954)
Q Consensus 727 G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-- 800 (954)
|.+.... .......+|+.+.++.+ +.+++.++|||+||.+++.++.++|++++++|++++........
T Consensus 61 G~s~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~ 134 (278)
T 3oos_A 61 GNSDSAKNDSEYSMTETIKDLEAIREAL------YINKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHK 134 (278)
T ss_dssp TTSCCCSSGGGGSHHHHHHHHHHHHHHT------TCSCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBGGGGGST
T ss_pred CCCCCCCCcccCcHHHHHHHHHHHHHHh------CCCeEEEEeecccHHHHHHHHHhCchhhCeEEEecCcccccccccc
Confidence 8775532 12344555555555443 34589999999999999999999999999999999875511000
Q ss_pred ---CCCcccc---------------------ch---hh-------------------------hcHHHH-----HhcCcc
Q 002194 801 ---FGFQNED---------------------RT---LW-------------------------EATSTY-----VEMSPF 823 (954)
Q Consensus 801 ---~~~~~~~---------------------~~---~~-------------------------~~~~~~-----~~~sp~ 823 (954)
+...... .. .| .....+ ...+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (278)
T 3oos_A 135 DSIYCSKNVKFNRIVSIMNALNDDSTVQEERKALSREWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVR 214 (278)
T ss_dssp TSTTSTTSTTHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHCSCHHHHHHHTTSCCCCEECHHHHHHHHHTTGGGCBCH
T ss_pred chhhhhhchhHHHHHHHHHhhcccccCchHHHHHHHHHhhcccCCcHHHHHHhhccccchhHHHHHHHhhhcccccccHH
Confidence 0000000 00 00 000001 122333
Q ss_pred cccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 824 ~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
..+.++++|+|+++|++|..+| .+.++++.+.+. ++++++++++||... .++...+.+.|.+||
T Consensus 215 ~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl 278 (278)
T 3oos_A 215 QKLKFVKIPSFIYCGKHDVQCP--YIFSCEIANLIP----NATLTKFEESNHNPF-VEEIDKFNQFVNDTL 278 (278)
T ss_dssp HHHTTCCSCEEEEEETTCSSSC--HHHHHHHHHHST----TEEEEEETTCSSCHH-HHSHHHHHHHHHHTC
T ss_pred HHHhCCCCCEEEEEeccCCCCC--HHHHHHHHhhCC----CcEEEEcCCcCCCcc-cccHHHHHHHHHhhC
Confidence 4567889999999999999998 888888887663 469999999999864 445666666666653
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-13 Score=151.75 Aligned_cols=289 Identities=12% Similarity=0.123 Sum_probs=169.7
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc--------------ccccccceeEecC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY--------------LNAIFDNFVWVNN 254 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~--------------~~~~~~~~~wspD 254 (954)
..+..++|||||++||... ...+.++++.+|+........... ....+..++|+||
T Consensus 65 ~~V~~v~fspdg~~la~g~----------~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGC----------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp SCCCEEEECTTSSEEEEEC----------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred CEEEEEEECCCCCEEEEEc----------CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence 4688899999999998743 234566677666543322111100 0001557899999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee-EcCCC-
Q 002194 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP- 331 (954)
Q Consensus 255 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-~l~~~- 331 (954)
|+.|+... ....|.++|+ +++.. .+...
T Consensus 135 g~~l~s~~-------------------------------------------------~d~~i~iwd~~~~~~~~~~~~h~ 165 (393)
T 1erj_A 135 GKFLATGA-------------------------------------------------EDRLIRIWDIENRKIVMILQGHE 165 (393)
T ss_dssp SSEEEEEE-------------------------------------------------TTSCEEEEETTTTEEEEEECCCS
T ss_pred CCEEEEEc-------------------------------------------------CCCeEEEEECCCCcEEEEEccCC
Confidence 99998761 1234777788 66543 34434
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeecc-CC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS-DK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wsp-Dg 410 (954)
..+..++|+|||++|+..+.+ +.+.+||+.+++........ .++..++|+| ||
T Consensus 166 ~~v~~~~~~p~~~~l~s~s~d-------------~~v~iwd~~~~~~~~~~~~~-------------~~v~~~~~~~~~~ 219 (393)
T 1erj_A 166 QDIYSLDYFPSGDKLVSGSGD-------------RTVRIWDLRTGQCSLTLSIE-------------DGVTTVAVSPGDG 219 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEECS-------------SCEEEEEECSTTC
T ss_pred CCEEEEEEcCCCCEEEEecCC-------------CcEEEEECCCCeeEEEEEcC-------------CCcEEEEEECCCC
Confidence 678899999999999887743 38999999876543322211 2446788999 88
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEE-------eecccccCceeeccCCceEEEEEeccccceE
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EIL-------HKLDLRYGGISWCDDSLALVYESWYKTRRTR 482 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l-------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 482 (954)
+.++.. +..+.|.+|++ ..+.. ..+ ..+...+..++|+|||+.|+..+.++. .+
T Consensus 220 ~~l~~~-------------s~d~~v~iwd~---~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~--v~ 281 (393)
T 1erj_A 220 KYIAAG-------------SLDRAVRVWDS---ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS--VK 281 (393)
T ss_dssp CEEEEE-------------ETTSCEEEEET---TTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE--EE
T ss_pred CEEEEE-------------cCCCcEEEEEC---CCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE--EE
Confidence 766554 33557888886 33332 333 234456778999999999887765432 55
Q ss_pred EEEEcCCCCC--------CCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeE
Q 002194 483 TWVISPGSKD--------VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFL 554 (954)
Q Consensus 483 l~~~d~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 554 (954)
||.+...... .........+...+.. +.|+|+|++|+.... ...|
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~------~~~~~~~~~l~sgs~---------------------D~~v 334 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS------VATTQNDEYILSGSK---------------------DRGV 334 (393)
T ss_dssp EEEC---------------CEEEEEECCSSCEEE------EEECGGGCEEEEEET---------------------TSEE
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccCcEEE------EEECCCCCEEEEEeC---------------------CCeE
Confidence 5554322100 0111112222222333 788999998877652 2359
Q ss_pred EEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEEC
Q 002194 555 DLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSW 616 (954)
Q Consensus 555 ~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~ 616 (954)
++||+.+++.......... .+..+ .......++|+++.++.... -..+.+|+.
T Consensus 335 ~iwd~~~~~~~~~l~~h~~----~v~~v-~~~~~~~~~p~~~~l~sgs~----Dg~i~iW~~ 387 (393)
T 1erj_A 335 LFWDKKSGNPLLMLQGHRN----SVISV-AVANGSSLGPEYNVFATGSG----DCKARIWKY 387 (393)
T ss_dssp EEEETTTCCEEEEEECCSS----CEEEE-EECSSCTTCTTCEEEEEEET----TSEEEEEEE
T ss_pred EEEECCCCeEEEEECCCCC----CEEEE-EecCCcCcCCCCCEEEEECC----CCcEEECcc
Confidence 9999998886654443221 12221 11122346677765543322 245777764
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=152.07 Aligned_cols=198 Identities=10% Similarity=-0.024 Sum_probs=130.5
Q ss_pred cEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHH
Q 002194 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAV 747 (954)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av 747 (954)
|+||++||.+... ..| ......|+++||.|++ .+..|+|.+.... .......+|+.+.+
T Consensus 5 ~~vv~lHG~~~~~-----------~~~----~~~~~~l~~~g~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l 66 (258)
T 3dqz_A 5 HHFVLVHNAYHGA-----------WIW----YKLKPLLESAGHRVTA---VELAASGIDPRPIQAVETVDEYSKPLIETL 66 (258)
T ss_dssp CEEEEECCTTCCG-----------GGG----TTHHHHHHHTTCEEEE---ECCTTSTTCSSCGGGCCSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCcc-----------ccH----HHHHHHHHhCCCEEEE---ecCCCCcCCCCCCCccccHHHhHHHHHHHH
Confidence 8899999974221 112 1356778889999999 6667888875432 23455566665555
Q ss_pred HHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCC-------------Cccccc------
Q 002194 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG-------------FQNEDR------ 808 (954)
Q Consensus 748 ~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~-------------~~~~~~------ 808 (954)
+.+ + . .+++.++|||+||.+++.++.++|++++++|++++.......... ......
T Consensus 67 ~~l---~-~-~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (258)
T 3dqz_A 67 KSL---P-E-NEEVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRN 141 (258)
T ss_dssp HTS---C-T-TCCEEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCCCCSSSCTTHHHHHHHTSTTCCTTCEEEEEEETT
T ss_pred HHh---c-c-cCceEEEEeChhHHHHHHHHHhChHhhcEEEEecCCCCCCCCcchHHHHHhcccchhhhhcccchhhhhc
Confidence 443 1 1 268999999999999999999999999999999885432111100 000000
Q ss_pred ---------h------h-----hhcHHHH--------------HhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHH
Q 002194 809 ---------T------L-----WEATSTY--------------VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (954)
Q Consensus 809 ---------~------~-----~~~~~~~--------------~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~ 854 (954)
. . .+....+ ............++|+|+++|++|..+| ++..+++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~ 219 (258)
T 3dqz_A 142 GTMSLLKMGPKFMKARLYQNCPIEDYELAKMLHRQGSFFTEDLSKKEKFSEEGYGSVQRVYVMSSEDKAIP--CDFIRWM 219 (258)
T ss_dssp EEEEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHHTSCCCCTTTGGGSCEEEEEETTCSSSC--HHHHHHH
T ss_pred cChhhhhhhHHHHHHHhhccCCHHHHHHHHHhccCCchhhhhhhccccccccccccCCEEEEECCCCeeeC--HHHHHHH
Confidence 0 0 0000000 0011122222236899999999999998 8888888
Q ss_pred HHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 855 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
.+.+.. .+++++|++||... .+..+.+.+.|.+|+++|+
T Consensus 220 ~~~~~~----~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~~~ 258 (258)
T 3dqz_A 220 IDNFNV----SKVYEIDGGDHMVM-LSKPQKLFDSLSAIATDYM 258 (258)
T ss_dssp HHHSCC----SCEEEETTCCSCHH-HHSHHHHHHHHHHHHHHTC
T ss_pred HHhCCc----ccEEEcCCCCCchh-hcChHHHHHHHHHHHHHhC
Confidence 776643 38889999999864 5677888999999999874
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=157.67 Aligned_cols=216 Identities=15% Similarity=0.076 Sum_probs=134.9
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (954)
+...++. +|.++..+.+-|+ ..|+||++||++.... .|. ..+..|++ ||.|++
T Consensus 46 ~~~~v~~-~~~~~~~~~~g~~--------~~~~vv~lHG~~~~~~-----------~~~----~~~~~L~~-g~~vi~-- 98 (306)
T 2r11_A 46 KSFYIST-RFGQTHVIASGPE--------DAPPLVLLHGALFSST-----------MWY----PNIADWSS-KYRTYA-- 98 (306)
T ss_dssp EEEEECC-TTEEEEEEEESCT--------TSCEEEEECCTTTCGG-----------GGT----TTHHHHHH-HSEEEE--
T ss_pred ceEEEec-CCceEEEEeeCCC--------CCCeEEEECCCCCCHH-----------HHH----HHHHHHhc-CCEEEE--
Confidence 4444543 5567776664321 2578999999742211 121 23445665 999999
Q ss_pred CCCCCCC-CCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC
Q 002194 720 TTPIIGE-GDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (954)
Q Consensus 720 ~~~~~G~-G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (954)
.+..|+ |.+... ........+|+.++++.+ +.+++.++|||+||.+++.++.++|++++++|+++|....
T Consensus 99 -~D~~G~gG~s~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 171 (306)
T 2r11_A 99 -VDIIGDKNKSIPENVSGTRTDYANWLLDVFDNL------GIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETF 171 (306)
T ss_dssp -ECCTTSSSSCEECSCCCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBT
T ss_pred -ecCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhc------CCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCcccc
Confidence 555566 555432 223455566666665553 3468999999999999999999999999999999987653
Q ss_pred CCCCCCCc--------c---c-----------cc-hhhhcHHHH-H-----------------hcCcccccCCCCCCEEE
Q 002194 797 TLTPFGFQ--------N---E-----------DR-TLWEATSTY-V-----------------EMSPFMSANKLKKPILL 835 (954)
Q Consensus 797 ~~~~~~~~--------~---~-----------~~-~~~~~~~~~-~-----------------~~sp~~~~~~~~~P~Li 835 (954)
........ . . .. ......+.. . .......+.++++|+|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~li 251 (306)
T 2r11_A 172 LPFHHDFYKYALGLTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVPILL 251 (306)
T ss_dssp SCCCHHHHHHHHTTTSTTHHHHHHHHHTTTCCCSCHHHHHHHHHHHHCCSSSCCCCCCTTSSSCBCCHHHHHTCCSCEEE
T ss_pred CcccHHHHHHHhHHHHHHHHHHHHHHhhCCccccccccccccHHHHHHHHhhhhhhhhccCCCCCCCHHHHhcCCCCEEE
Confidence 21110000 0 0 00 000000000 0 00112234577899999
Q ss_pred EEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 836 i~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
++|++|..+| +..+.++++.+. .++++++++++||... .+....+.+.|.+||+
T Consensus 252 i~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 305 (306)
T 2r11_A 252 LLGEHEVIYD--PHSALHRASSFV---PDIEAEVIKNAGHVLS-MEQPTYVNERVMRFFN 305 (306)
T ss_dssp EEETTCCSSC--HHHHHHHHHHHS---TTCEEEEETTCCTTHH-HHSHHHHHHHHHHHHC
T ss_pred EEeCCCcccC--HHHHHHHHHHHC---CCCEEEEeCCCCCCCc-ccCHHHHHHHHHHHHh
Confidence 9999999998 887776665442 2368999999999763 4556777888888875
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-13 Score=148.14 Aligned_cols=254 Identities=13% Similarity=0.108 Sum_probs=154.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++|++...+ . ..|.+|++..++ +..+.+..++...
T Consensus 39 ~~~~~~~spdg~~l~~~~~~----------------------~----------~~v~~~~~~~~~--~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRP----------------------E----------FRVLAYRIAPDD--GALTFAAESALPG 84 (343)
T ss_dssp CCCCEEECTTSSEEEEEETT----------------------T----------TEEEEEEECTTT--CCEEEEEEEECSS
T ss_pred CCceEEECCCCCEEEEeecC----------------------C----------CeEEEEEecCCC--CceeeccccccCC
Confidence 56689999999999887763 0 267888885212 3434443333223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCC---ceeecccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG---KARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g---~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
.+..++|||||++|+++.. . ...|++++++.+ +..+....... +..++|+|||+.|+++..
T Consensus 85 ~~~~~~~s~dg~~l~~~~~------~--~~~i~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~--- 148 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSY------N--AGNVSVTRLEDGLPVGVVDVVEGLDG-----CHSANISPDNRTLWVPAL--- 148 (343)
T ss_dssp CCSEEEECTTSSEEEEEET------T--TTEEEEEEEETTEEEEEEEEECCCTT-----BCCCEECTTSSEEEEEEG---
T ss_pred CCcEEEEcCCCCEEEEEec------C--CCeEEEEECCCCccccccccccCCCC-----ceEEEECCCCCEEEEecC---
Confidence 6788899999999888652 1 335666666322 22222222221 568899999998887610
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C-CceeE-----cCC--Ccccccc
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D-GTVKE-----IGP--PAVYTSL 337 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~-G~~~~-----l~~--~~~~~~~ 337 (954)
....|+++++ + |+... +.. ......+
T Consensus 149 ---------------------------------------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (343)
T 1ri6_A 149 ---------------------------------------------KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM 183 (343)
T ss_dssp ---------------------------------------------GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE
T ss_pred ---------------------------------------------CCCEEEEEEecCCCceeeecccccccCCCCCcceE
Confidence 2245778887 4 65432 221 2455678
Q ss_pred ccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC--ceEEE---eccCCCcccCCccccccccCccceeeccCCCC
Q 002194 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVRE---LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (954)
Q Consensus 338 ~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g--~~~~~---l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~ 412 (954)
+|+|||++|++.... ...+.+|+++. ++.+. +...+.. + .....+..++|+|||+.
T Consensus 184 ~~~pdg~~l~~~~~~------------~~~i~~~~~~~~~g~~~~~~~~~~~~~~------~-~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 184 VFHPNEQYAYCVNEL------------NSSVDVWELKDPHGNIECVQTLDMMPEN------F-SDTRWAADIHITPDGRH 244 (343)
T ss_dssp EECTTSSEEEEEETT------------TTEEEEEESSCTTSCCEEEEEEECSCTT------C-CSCCCEEEEEECTTSSE
T ss_pred EECCCCCEEEEEeCC------------CCEEEEEEecCCCCcEEEEeeccccCcc------c-cccCCccceEECCCCCE
Confidence 999999999887632 23789999853 33322 2211110 0 00012346899999997
Q ss_pred ceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe--ecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+++. . ...+.|.+|+++. .++..+.+. .....+..++|+|||++|+++...++ ...+|.++.++
T Consensus 245 l~v~-~-----------~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-~v~v~~~d~~~ 310 (343)
T 1ri6_A 245 LYAC-D-----------RTASLITVFSVSE-DGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSH-HISVYEIVGEQ 310 (343)
T ss_dssp EEEE-E-----------TTTTEEEEEEECT-TSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTC-EEEEEEEETTT
T ss_pred EEEE-e-----------cCCCEEEEEEEcC-CCCceEEeeeecCCCccceEEECCCCCEEEEecCCCC-eEEEEEEcCCC
Confidence 6554 1 1245788888611 134444432 22334778999999999888764443 47788888877
Q ss_pred C
Q 002194 491 K 491 (954)
Q Consensus 491 ~ 491 (954)
+
T Consensus 311 g 311 (343)
T 1ri6_A 311 G 311 (343)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.6e-15 Score=156.00 Aligned_cols=197 Identities=10% Similarity=0.063 Sum_probs=131.4
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch----h--hHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND----R--FVEQLVACA 743 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~----~--~~~~~~~D~ 743 (954)
.|+||++||.+.... .|. ..+..|++ ||.|++ .+..|+|.+.... . ......+|+
T Consensus 28 ~~~vv~lHG~~~~~~-----------~~~----~~~~~l~~-g~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 88 (282)
T 3qvm_A 28 EKTVLLAHGFGCDQN-----------MWR----FMLPELEK-QFTVIV---FDYVGSGQSDLESFSTKRYSSLEGYAKDV 88 (282)
T ss_dssp SCEEEEECCTTCCGG-----------GGT----TTHHHHHT-TSEEEE---CCCTTSTTSCGGGCCTTGGGSHHHHHHHH
T ss_pred CCeEEEECCCCCCcc-----------hHH----HHHHHHhc-CceEEE---EecCCCCCCCCCCCCccccccHHHHHHHH
Confidence 389999999642211 121 23445555 999999 6667888875542 1 245556666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCC----ccc-----------cc
Q 002194 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGF----QNE-----------DR 808 (954)
Q Consensus 744 ~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~----~~~-----------~~ 808 (954)
.+.++.+ +.+++.++|||+||.+++.++.++|++++++|+++|..........+ ... ..
T Consensus 89 ~~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (282)
T 3qvm_A 89 EEILVAL------DLVNVSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNY 162 (282)
T ss_dssp HHHHHHT------TCCSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTEECSBCHHHHHHHHHHHHHCH
T ss_pred HHHHHHc------CCCceEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhhhchhccccHHHHHHHHhcch
Confidence 6665554 34689999999999999999999999999999999864321110000 000 00
Q ss_pred hhh------------------h---------c-------HHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHH
Q 002194 809 TLW------------------E---------A-------TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (954)
Q Consensus 809 ~~~------------------~---------~-------~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~ 854 (954)
..| . . ...+...+....+.++++|+|+++|++|..+| .+.+.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~ 240 (282)
T 3qvm_A 163 IGWANYLAPLVMGASHSSELIGELSGSFCTTDPIVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLAS--PEVGQYM 240 (282)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCBCGGGGGGCCSCEEEEEEEECTTCC--HHHHHHH
T ss_pred hhHHHHHHhhccCCccchhhHHHHHHHHhcCCcHHHHHHHHHHhcccHHHHHhcCCCCeEEEEeCCCCcCC--HHHHHHH
Confidence 000 0 0 00011123335567889999999999999998 8888888
Q ss_pred HHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 855 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
.+.+. ..+++++++++|... .+....+.+.|.+||++..
T Consensus 241 ~~~~~----~~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~~~~ 279 (282)
T 3qvm_A 241 AENIP----NSQLELIQAEGHCLH-MTDAGLITPLLIHFIQNNQ 279 (282)
T ss_dssp HHHSS----SEEEEEEEEESSCHH-HHCHHHHHHHHHHHHHHC-
T ss_pred HHhCC----CCcEEEecCCCCccc-ccCHHHHHHHHHHHHHhcC
Confidence 77663 369999999999874 4557788889999998754
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-13 Score=146.67 Aligned_cols=265 Identities=11% Similarity=0.088 Sum_probs=165.6
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+....|||||+.|+..+. ...|.++|..+++........... +..++|+|||+.|+...
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~---------Dg~v~iWd~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~s~~------ 116 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQ---------DGKLIIWDSYTTNKVHAIPLRSSW----VMTCAYAPSGNYVACGG------ 116 (340)
T ss_dssp SCEEEEEECTTSSEEEEEET---------TTEEEEEETTTCCEEEEEECSSSC----EEEEEECTTSSEEEEEE------
T ss_pred CceEEEEECCCCCEEEEEeC---------CCcEEEEECCCCCcceEeecCCcc----EEEEEECCCCCEEEEEe------
Confidence 46888999999999887552 457778888877654433333322 66889999999988761
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-----eeEcCCC-ccccccccCC
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-----VKEIGPP-AVYTSLDPSP 341 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-----~~~l~~~-~~~~~~~~Sp 341 (954)
. ...+.++++ +++ .+.+... +.+....|++
T Consensus 117 ---------------~----------------------------d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (340)
T 1got_B 117 ---------------L----------------------------DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153 (340)
T ss_dssp ---------------T----------------------------TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE
T ss_pred ---------------C----------------------------CCeEEEEECccCCCcceeEEEecCCCccEEEEEECC
Confidence 1 123455555 321 1223333 5667788999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~ 420 (954)
|++ |+..+. ++.+.+||+.+++. ..+..+ ...+..++|+|||+.++..
T Consensus 154 ~~~-l~s~s~-------------d~~i~~wd~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~l~sg---- 202 (340)
T 1got_B 154 DNQ-IVTSSG-------------DTTCALWDIETGQQTTTFTGH-------------TGDVMSLSLAPDTRLFVSG---- 202 (340)
T ss_dssp TTE-EEEEET-------------TSCEEEEETTTTEEEEEECCC-------------SSCEEEEEECTTSSEEEEE----
T ss_pred CCc-EEEEEC-------------CCcEEEEECCCCcEEEEEcCC-------------CCceEEEEECCCCCEEEEE----
Confidence 887 554442 23899999986654 333322 1345689999999855544
Q ss_pred cCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEec
Q 002194 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD 500 (954)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~ 500 (954)
+..+.|.+|++ .++.....+..+...+..++|+|||+.|+..+.++. .+| +|+..+ .......
T Consensus 203 ---------~~d~~v~~wd~--~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~--v~i--wd~~~~--~~~~~~~ 265 (340)
T 1got_B 203 ---------ACDASAKLWDV--REGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT--CRL--FDLRAD--QELMTYS 265 (340)
T ss_dssp ---------ETTSCEEEEET--TTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEE--EETTTT--EEEEEEC
T ss_pred ---------eCCCcEEEEEC--CCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc--EEE--EECCCC--cEEEEEc
Confidence 33567899996 233334455666777889999999999888765543 444 455543 2222221
Q ss_pred CC--CCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccce
Q 002194 501 RS--SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYET 578 (954)
Q Consensus 501 ~~--~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 578 (954)
.. ...+.. ++|+|||++++.... ...|++||+.+++.......... .
T Consensus 266 ~~~~~~~v~~------~~~s~~g~~l~~g~~---------------------d~~i~vwd~~~~~~~~~~~~h~~----~ 314 (340)
T 1got_B 266 HDNIICGITS------VSFSKSGRLLLAGYD---------------------DFNCNVWDALKADRAGVLAGHDN----R 314 (340)
T ss_dssp CTTCCSCEEE------EEECTTSSEEEEEET---------------------TSEEEEEETTTCCEEEEEECCSS----C
T ss_pred cCCcccceEE------EEECCCCCEEEEECC---------------------CCeEEEEEcccCcEeeEeecCCC----c
Confidence 11 111222 789999999887762 23599999988776544332211 1
Q ss_pred eEEeccCCccccccccCCEEEEE
Q 002194 579 TVALMSDQTEGDLYLNQLKILTS 601 (954)
Q Consensus 579 ~~~~~~~~~~~~~s~dg~~l~~~ 601 (954)
+.. .+|+|||..++..
T Consensus 315 v~~-------~~~s~dg~~l~s~ 330 (340)
T 1got_B 315 VSC-------LGVTDDGMAVATG 330 (340)
T ss_dssp EEE-------EEECTTSSCEEEE
T ss_pred EEE-------EEEcCCCCEEEEE
Confidence 222 4688999876643
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.2e-15 Score=153.13 Aligned_cols=195 Identities=11% Similarity=0.060 Sum_probs=127.6
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh-hHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR-FVEQLVACAEAAVE 748 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~-~~~~~~~D~~~av~ 748 (954)
.|+||++||...... .|. ....|+ +||.|++ .+..|+|.+..... ......+|+.++++
T Consensus 16 ~~~vv~~hG~~~~~~-----------~~~-----~~~~l~-~g~~v~~---~d~~g~g~s~~~~~~~~~~~~~~~~~~~~ 75 (245)
T 3e0x_A 16 PNTLLFVHGSGCNLK-----------IFG-----ELEKYL-EDYNCIL---LDLKGHGESKGQCPSTVYGYIDNVANFIT 75 (245)
T ss_dssp SCEEEEECCTTCCGG-----------GGT-----TGGGGC-TTSEEEE---ECCTTSTTCCSCCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcccHH-----------HHH-----HHHHHH-hCCEEEE---ecCCCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 689999999643211 111 112233 8999999 55667777754322 34566777777764
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHh-CCCcccEEEEeccCCCCCCCCCCC-------------cc----cc---
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAH-APHLFCCGIARSGAYNRTLTPFGF-------------QN----ED--- 807 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~~~~~~~~~~~~~-------------~~----~~--- 807 (954)
+...+...+ ++.++|||+||.+++.++.+ +|+ ++++|+++|..........+ .. ..
T Consensus 76 ~~~~~~~~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (245)
T 3e0x_A 76 NSEVTKHQK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYHNQLDNNYLLECIGGIDNP 152 (245)
T ss_dssp HCTTTTTCS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHTTCCCHHHHHHHHTCSCSH
T ss_pred hhhhHhhcC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHHHHHHhhcCcccccccchH
Confidence 443333344 89999999999999999999 999 99999999876541110000 00 00
Q ss_pred -------------chhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 002194 808 -------------RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874 (954)
Q Consensus 808 -------------~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 874 (954)
.............+....+.++++|+|+++|++|..+| .+.++++++.+. +++++++++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~g 226 (245)
T 3e0x_A 153 LSEKYFETLEKDPDIMINDLIACKLIDLVDNLKNIDIPVKAIVAKDELLTL--VEYSEIIKKEVE----NSELKIFETGK 226 (245)
T ss_dssp HHHHHHTTSCSSHHHHHHHHHHHHHCBCGGGGGGCCSCEEEEEETTCSSSC--HHHHHHHHHHSS----SEEEEEESSCG
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhccccHHHHHHhCCCCEEEEEeCCCCCCC--HHHHHHHHHHcC----CceEEEeCCCC
Confidence 00001111123344556678889999999999999998 888888877763 37999999999
Q ss_pred CcCCCcccHHHHHHHHHHHH
Q 002194 875 HGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 875 H~~~~~~~~~~~~~~i~~fl 894 (954)
|... .++...+.+.+.+||
T Consensus 227 H~~~-~~~~~~~~~~i~~fl 245 (245)
T 3e0x_A 227 HFLL-VVNAKGVAEEIKNFI 245 (245)
T ss_dssp GGHH-HHTHHHHHHHHHTTC
T ss_pred cceE-EecHHHHHHHHHhhC
Confidence 9863 345555666666553
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.3e-15 Score=156.51 Aligned_cols=208 Identities=13% Similarity=0.106 Sum_probs=126.7
Q ss_pred ceEEEEEEcCC-CeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEE
Q 002194 638 QKELIKYQRKD-GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAI 715 (954)
Q Consensus 638 ~~~~~~~~~~~-g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V 715 (954)
..+.+++.+.. |.++..++|+|++|++.+ ++|+|++.||+.. +..........+++ .+.+|
T Consensus 12 ~~~~~~~~S~~~~~~~~~~vylP~~y~~~~--~yPvly~l~G~~~---------------~~~~~~~~~~~l~~~~~~iv 74 (278)
T 2gzs_A 12 HFSATSFDSVDGTRHYRVWTAVPNTTAPAS--GYPILYMLDGNAV---------------MDRLDDELLKQLSEKTPPVI 74 (278)
T ss_dssp EEEEEEEECTTSSCEEEEEEEEESSCCCTT--CEEEEEESSHHHH---------------HHHCCHHHHHHHTTSCCCEE
T ss_pred ceEEEEEEcCCCCceEEEEEECCCCCCCCC--CCCEEEEeeChhH---------------HHHHHHHHHHHhccCCCeEE
Confidence 46778888775 689999999999987644 5998877777421 00001122344554 56777
Q ss_pred EEcCCCCCCC-----CCCcccchh----------------hHHHHHHHH--HHHHHHHHHcCCCCCCcEEEEeeChHHHH
Q 002194 716 LGGPTTPIIG-----EGDEEANDR----------------FVEQLVACA--EAAVEEVVRRGVAHPSKIAVGGHSYGAFM 772 (954)
Q Consensus 716 ~~~~~~~~~G-----~G~~~~~~~----------------~~~~~~~D~--~~av~~l~~~~~~d~~ri~l~G~S~GG~~ 772 (954)
+..++.+... ++....+.. -....+.+. .+.+.++.++..+|++|++|+|+||||++
T Consensus 75 V~v~~~~~~~~~~~~R~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~ 154 (278)
T 2gzs_A 75 VAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLF 154 (278)
T ss_dssp EEEEESSSSSCCHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHH
T ss_pred EEEcCCCCCcCcccccccccCCCCccccccccccCcCCCcCCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHH
Confidence 7533321100 000000000 001111111 12344455556688889999999999999
Q ss_pred HHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCC------C
Q 002194 773 TANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG------T 846 (954)
Q Consensus 773 a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~------~ 846 (954)
|+.++.+ |+.|+++++++|.+.+. . ..... ......+. ..-..|+++.||+.|..++ +
T Consensus 155 a~~~~~~-p~~f~~~~~~s~~~~~~-------~--~~~~~---~~~~~~~~---~~~~~~i~l~~G~~d~~~~~~~~~~~ 218 (278)
T 2gzs_A 155 VLDSWLS-SSYFRSYYSASPSLGRG-------Y--DALLS---RVTAVEPL---QFCTKHLAIMEGSATQGDNRETHAVG 218 (278)
T ss_dssp HHHHHHH-CSSCSEEEEESGGGSTT-------H--HHHHH---HHHTSCTT---TTTTCEEEEEECCC-----------C
T ss_pred HHHHHhC-ccccCeEEEeCcchhcC-------c--chHHH---HHHHhhcc---CCCCCcEEEEecCccccccccchhhh
Confidence 9999999 99999999999863211 0 00000 01111110 1124689999999997631 0
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 002194 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
+..++++++++|+..|+++++.++|+++|.+.
T Consensus 219 ~~~~~~~~~~~L~~~g~~~~~~~~~g~~H~~~ 250 (278)
T 2gzs_A 219 VLSKIHTTLTILKDKGVNAVFWDFPNLGHGPM 250 (278)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECTTCCHHHH
T ss_pred hHHHHHHHHHHHHcCCCeeEEEEcCCCCccch
Confidence 16889999999999999999999999999853
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-13 Score=153.06 Aligned_cols=291 Identities=6% Similarity=-0.016 Sum_probs=172.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||+.++.+... + . .++.|.+|++.. ++...+.......
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~--------------------~-~--------~d~~v~iw~~~~----~~~~~~~~~~~~~ 66 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNF--------------------A-R--------GTGVIQLYEIQH----GDLKLLREIEKAK 66 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC-----------------------C--------CCEEEEEEEECS----SSEEEEEEEEESS
T ss_pred ceEEEEEcCCCceEEEecCc--------------------c-C--------CCcEEEEEeCCC----CcccceeeecccC
Confidence 56788999999888766531 0 0 005799999964 3333332222334
Q ss_pred cccceeecCC---CCeEEEEEeeccccCCCCceEEEEEECCCCc-eeecccCCCccccccccce------eEecCCeEEE
Q 002194 190 KLNFVTWSQD---GKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPLFQSPDIYLNAIFDNF------VWVNNSTLLV 259 (954)
Q Consensus 190 ~~~~~~wSPD---G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~~~------~wspDG~~l~ 259 (954)
.+..+.|+|| |+.|+... ....|.++++++++ ........... +..+ +|+|||+.|+
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGD---------FGGNLHIWNLEAPEMPVYSVKGHKEI----INAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEE---------TTSCEEEECTTSCSSCSEEECCCSSC----EEEEEEESGGGCC-CCCEEE
T ss_pred cEEEEEEcCCCCCCceEEEec---------CCCeEEEEeCCCCCccEEEEEecccc----eEEEeeccccccCCCccEEE
Confidence 6889999999 68888754 24567788888765 33222222222 4445 5689999888
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc--eeEcCCC-c---
Q 002194 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGPP-A--- 332 (954)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~--~~~l~~~-~--- 332 (954)
... ....|.++++ ++. ...+... +
T Consensus 134 ~~~-------------------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (357)
T 3i2n_A 134 TGS-------------------------------------------------RDGTVKVWDPRQKDDPVANMEPVQGENK 164 (357)
T ss_dssp EEE-------------------------------------------------TTSCEEEECTTSCSSCSEEECCCTTSCC
T ss_pred EEe-------------------------------------------------CCCeEEEEeCCCCCCcceeccccCCCCC
Confidence 761 1123666676 443 3333321 1
Q ss_pred -ccccc----ccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeec
Q 002194 333 -VYTSL----DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (954)
Q Consensus 333 -~~~~~----~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~ws 407 (954)
.+..+ +|+|||++|+..+.+ +.+.+||+.+++......+. ..+..+.|+
T Consensus 165 ~~v~~~~~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~~~-------------~~v~~~~~~ 218 (357)
T 3i2n_A 165 RDCWTVAFGNAYNQEERVVCAGYDN-------------GDIKLFDLRNMALRWETNIK-------------NGVCSLEFD 218 (357)
T ss_dssp CCEEEEEEECCCC-CCCEEEEEETT-------------SEEEEEETTTTEEEEEEECS-------------SCEEEEEES
T ss_pred CceEEEEEEeccCCCCCEEEEEccC-------------CeEEEEECccCceeeecCCC-------------CceEEEEcC
Confidence 33333 489999999988743 38999999987654443322 345679999
Q ss_pred c---CCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe-----ecccccCceeeccCCceEEEEEecccc
Q 002194 408 S---DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-----KLDLRYGGISWCDDSLALVYESWYKTR 479 (954)
Q Consensus 408 p---Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-----~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (954)
| +++.++.. +..+.|.+|++ ..+.....+. .+...+..++|+|+|+.++++...++
T Consensus 219 ~~~~~~~~l~~~-------------~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg- 282 (357)
T 3i2n_A 219 RKDISMNKLVAT-------------SLEGKFHVFDM--RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG- 282 (357)
T ss_dssp CSSSSCCEEEEE-------------ESTTEEEEEEE--EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS-
T ss_pred CCCCCCCEEEEE-------------CCCCeEEEEeC--cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC-
Confidence 9 88876665 33557888886 2222222332 56667788999999995444444443
Q ss_pred ceEEEEEcCCCCCC---------------CcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCC
Q 002194 480 RTRTWVISPGSKDV---------------APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNG 544 (954)
Q Consensus 480 ~~~l~~~d~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~ 544 (954)
..+||.+....... ........+...+.. ++|+|||+++++...
T Consensus 283 ~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~------~~~s~~~~~l~~s~~--------------- 341 (357)
T 3i2n_A 283 GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS------LDWSPDKRGLCVCSS--------------- 341 (357)
T ss_dssp EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE------EEECSSSTTEEEEEE---------------
T ss_pred cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE------EEEcCCCCeEEEEec---------------
Confidence 36677666433210 011122223333333 789999999985431
Q ss_pred CCCCCCCCeEEEEECCCCC
Q 002194 545 ATPEGNIPFLDLFDINTGS 563 (954)
Q Consensus 545 ~~~~~~~~~l~~~d~~~g~ 563 (954)
....|++||+.+.+
T Consensus 342 -----~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 342 -----FDQTVRVLIVTKLN 355 (357)
T ss_dssp -----TTSEEEEEEECC--
T ss_pred -----CCCcEEEEECCCcc
Confidence 12358889887543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-13 Score=148.32 Aligned_cols=230 Identities=13% Similarity=0.129 Sum_probs=141.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCcee--e-cccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR--P-LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~--~-lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
.+...+|||||+.||... . ...|.++++++++.. . +...... .+..++|+|||++|+...
T Consensus 18 ~v~~l~~sp~g~~las~~-------~--D~~i~iw~~~~~~~~~~~~~~~~h~~----~v~~~~~sp~g~~l~s~s---- 80 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCG-------G--DRRIRIWGTEGDSWICKSVLSEGHQR----TVRKVAWSPCGNYLASAS---- 80 (345)
T ss_dssp CEEEEEECTTSSCEEEEE-------T--TSCEEEEEEETTEEEEEEEECSSCSS----CEEEEEECTTSSEEEEEE----
T ss_pred cEEEEEECCCCCEEEEEc-------C--CCeEEEEEcCCCcceeeeeeccccCC----cEEEEEECCCCCEEEEEE----
Confidence 577899999999999865 3 334555565565422 1 2122222 277899999999998761
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc---eeEcCCC-ccccccccCC
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLDPSP 341 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~---~~~l~~~-~~~~~~~~Sp 341 (954)
.+ ..+.++++ .+. ...+... ..+..++|+|
T Consensus 81 -----------------~D----------------------------~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp 115 (345)
T 3fm0_A 81 -----------------FD----------------------------ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP 115 (345)
T ss_dssp -----------------TT----------------------------SCEEEEEECCC-EEEEEEECCCSSCEEEEEECT
T ss_pred -----------------CC----------------------------CcEEEEEccCCCeEEEEEccCCCCCceEEEEeC
Confidence 11 12334454 332 3334444 6788999999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~ 420 (954)
||++|+..+.+ +.+.+||++.+. ...+.... +....+..++|+|||+.++..
T Consensus 116 ~~~~l~s~s~D-------------~~v~iwd~~~~~~~~~~~~~~----------~h~~~v~~~~~~p~~~~l~s~---- 168 (345)
T 3fm0_A 116 SGNLLATCSRD-------------KSVWVWEVDEEDEYECVSVLN----------SHTQDVKHVVWHPSQELLASA---- 168 (345)
T ss_dssp TSSEEEEEETT-------------SCEEEEEECTTSCEEEEEEEC----------CCCSCEEEEEECSSSSCEEEE----
T ss_pred CCCEEEEEECC-------------CeEEEEECCCCCCeEEEEEec----------CcCCCeEEEEECCCCCEEEEE----
Confidence 99999988744 389999998542 22221111 112345679999999977665
Q ss_pred cCCCccccccCCCeEEEEecCCCCCCCc---eEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCC---
Q 002194 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVA--- 494 (954)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~---~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~--- 494 (954)
+..+.|.+|+. ..++. ..+..+...+..++|+|||+.|+..+.++. .+||.....+....
T Consensus 169 ---------s~d~~i~~w~~---~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~--v~iW~~~~~~~~~~~~~ 234 (345)
T 3fm0_A 169 ---------SYDDTVKLYRE---EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT--VRIWRQYLPGNEQGVAC 234 (345)
T ss_dssp ---------ETTSCEEEEEE---ETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEEEECTTCTTCCCC
T ss_pred ---------eCCCcEEEEEe---cCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe--EEEeccccCCCCcccee
Confidence 33456777775 33322 234556667888999999999988876554 78887644332110
Q ss_pred ------cEEE---ecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 495 ------PRIL---FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 495 ------~~~l---~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
...+ ...+...++. ++|+|++..++...
T Consensus 235 ~~~~~~~~~~~~~~~~h~~~v~~------v~~~~~~~~l~s~~ 271 (345)
T 3fm0_A 235 SGSDPSWKCICTLSGFHSRTIYD------IAWCQLTGALATAC 271 (345)
T ss_dssp C---CEEEEEEEECSSCSSCEEE------EEECTTTCCEEEEE
T ss_pred eccCCccceeEEecCCCCCcEEE------EEEecCCCEEEEEe
Confidence 0111 1112222333 78999999888766
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-13 Score=150.78 Aligned_cols=204 Identities=12% Similarity=0.072 Sum_probs=126.8
Q ss_pred cccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002194 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (954)
Q Consensus 333 ~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~ 412 (954)
....++|||||++|++.+... ++.|.+||+.+++......+. ..+..++|||||+.
T Consensus 135 ~~~~v~fSpDg~~la~as~~~-----------d~~i~iwd~~~~~~~~~~~~~-------------~~V~~v~fspdg~~ 190 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKV-----------PAIMRIIDPSDLTEKFEIETR-------------GEVKDLHFSTDGKV 190 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCS-----------SCEEEEEETTTTEEEEEEECS-------------SCCCEEEECTTSSE
T ss_pred CEEEEEEcCCCCEEEEEECCC-----------CCEEEEeECCCCcEEEEeCCC-------------CceEEEEEccCCce
Confidence 345689999999999876332 348999999976544322221 23578999999997
Q ss_pred ceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE--eecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
++.. + .+.+.+|+. .++...... ..+...+..++|+|||+.++..+..++....++.++...
T Consensus 191 l~s~-------------s-~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~ 254 (365)
T 4h5i_A 191 VAYI-------------T-GSSLEVIST--VTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS 254 (365)
T ss_dssp EEEE-------------C-SSCEEEEET--TTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET
T ss_pred EEec-------------c-ceeEEEEEe--ccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc
Confidence 7665 2 234555653 233332222 234456778999999999998877665445667776655
Q ss_pred CCCCcEE--EecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEe
Q 002194 491 KDVAPRI--LFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (954)
Q Consensus 491 ~~~~~~~--l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 568 (954)
....... ........+.. ++|||||++|+.... ...|++||+.+++...-.
T Consensus 255 ~~~~~~~~~~~~~~~~~V~~------~~~Spdg~~lasgs~---------------------D~~V~iwd~~~~~~~~~~ 307 (365)
T 4h5i_A 255 GNTSVLRSKQVTNRFKGITS------MDVDMKGELAVLASN---------------------DNSIALVKLKDLSMSKIF 307 (365)
T ss_dssp TEEEEEEEEEEESSCSCEEE------EEECTTSCEEEEEET---------------------TSCEEEEETTTTEEEEEE
T ss_pred ceecceeeeeecCCCCCeEe------EEECCCCCceEEEcC---------------------CCEEEEEECCCCcEEEEe
Confidence 3111111 12222233333 789999999988762 124999999988765432
Q ss_pred -ccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002194 569 -ESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (954)
Q Consensus 569 -~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~ 618 (954)
..-.. .+.. .+|||||++|+-... -..+.+++++.
T Consensus 308 ~~gH~~----~V~~-------v~fSpdg~~laS~S~----D~tvrvw~ip~ 343 (365)
T 4h5i_A 308 KQAHSF----AITE-------VTISPDSTYVASVSA----ANTIHIIKLPL 343 (365)
T ss_dssp TTSSSS----CEEE-------EEECTTSCEEEEEET----TSEEEEEECCT
T ss_pred cCcccC----CEEE-------EEECCCCCEEEEEeC----CCeEEEEEcCC
Confidence 22111 1222 579999987763322 24588888754
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-13 Score=151.50 Aligned_cols=274 Identities=14% Similarity=0.116 Sum_probs=164.3
Q ss_pred CCCCceecCCC-CEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCcee-eeecCCC
Q 002194 110 PLPALSFSPQR-DKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI-EIQGFPD 187 (954)
Q Consensus 110 ~~~~~~~SPDG-~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~-~lt~~~~ 187 (954)
.+..++||||| +.|+..+.+ +.|.+|++.. +... .+.....
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~d---------------------------------g~i~iwd~~~----~~~~~~~~~~~h 117 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKG---------------------------------GDIILWDYDV----QNKTSFIQGMGP 117 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBT---------------------------------SCEEEEETTS----TTCEEEECCCST
T ss_pred CEEEEEECCCCCCEEEEEcCC---------------------------------CeEEEEeCCC----cccceeeecCCc
Confidence 46678999999 888887765 5799999954 2322 2221123
Q ss_pred CCcccceeecC-CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 188 GAKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 188 ~~~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
...+..+.|+| |++.|+... ....|.++|+.++....+..... ....+..++|+|||+.|+...
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~---- 182 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSS---------IRGATTLRDFSGSVIQVFAKTDS--WDYWYCCVDVSVSRQMLATGD---- 182 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEE---------TTTEEEEEETTSCEEEEEECCCC--SSCCEEEEEEETTTTEEEEEE----
T ss_pred CCceeEEEeCCCCCCEEEEEe---------CCCEEEEEECCCCceEEEeccCC--CCCCeEEEEECCCCCEEEEEC----
Confidence 34788999999 666666644 24577888888766555543331 112267899999999888761
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCC-ceeEcCCC-ccccccccCCCCc
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEIGPP-AVYTSLDPSPDEK 344 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G-~~~~l~~~-~~~~~~~~SpDGk 344 (954)
....|.++|+++ ....+... ..+..++|+|||+
T Consensus 183 ---------------------------------------------~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~ 217 (383)
T 3ei3_B 183 ---------------------------------------------STGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCD 217 (383)
T ss_dssp ---------------------------------------------TTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCT
T ss_pred ---------------------------------------------CCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCC
Confidence 124577778844 44555544 7788999999999
Q ss_pred -EEEEEeecCCcccccccCCCCcceEEEeccC----ceEEEeccCCCcccCCccccccccCccceeecc-CCCCceEEEE
Q 002194 345 -YILISSIHRPYSFIVPCGRFPRQVGVWTTDG----IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS-DKPSTLYWAE 418 (954)
Q Consensus 345 -~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g----~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wsp-Dg~~i~~~~~ 418 (954)
.|+..+. ++.+.+||+.. +.......+ ...+..++|+| ||+.++..
T Consensus 218 ~~l~s~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~~l~~~-- 269 (383)
T 3ei3_B 218 WLMATSSV-------------DATVKLWDLRNIKDKNSYIAEMPH-------------EKPVNAAYFNPTDSTKLLTT-- 269 (383)
T ss_dssp TEEEEEET-------------TSEEEEEEGGGCCSTTCEEEEEEC-------------SSCEEEEEECTTTSCEEEEE--
T ss_pred CEEEEEeC-------------CCEEEEEeCCCCCcccceEEEecC-------------CCceEEEEEcCCCCCEEEEE--
Confidence 5555542 23899999985 222211111 13456899999 99877655
Q ss_pred eccCCCccccccCCCeEEEEecCCCCCCCceEEeeccc------ccCceeeccCCceEEEEEecc-----ccceEEEEEc
Q 002194 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL------RYGGISWCDDSLALVYESWYK-----TRRTRTWVIS 487 (954)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~------~~~~~~~spDg~~l~~~~~~~-----~~~~~l~~~d 487 (954)
+..+.|.+|++ .++.....+..... ..-...|+|++..++.....+ .....|.++|
T Consensus 270 -----------~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd 336 (383)
T 3ei3_B 270 -----------DQRNEIRVYSS--YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYD 336 (383)
T ss_dssp -----------ESSSEEEEEET--TBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEE
T ss_pred -----------cCCCcEEEEEC--CCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEe
Confidence 33568999996 33334444433211 111235555555544332110 0113466677
Q ss_pred CCCCCCCcEEEecCC-CCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 488 PGSKDVAPRILFDRS-SEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 488 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+.++ +........ ...... .++|+|||++|+...
T Consensus 337 ~~~~--~~~~~l~~~~~~~~~~-----~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 337 ANSG--GLVHQLRDPNAAGIIS-----LNKFSPTGDVLASGM 371 (383)
T ss_dssp TTTC--CEEEEECBTTBCSCCC-----EEEECTTSSEEEEEE
T ss_pred cCCC--ceeeeecCCCCCceEE-----EEEEecCccEEEEec
Confidence 7665 223222221 111111 158999999887774
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=170.44 Aligned_cols=221 Identities=14% Similarity=0.051 Sum_probs=148.6
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
..+...+...||.+++....- ..|+||++||++.... .| ...+..|+++||.|++
T Consensus 236 ~~~~~~~~~~dg~~l~~~~~g----------~~p~vv~~HG~~~~~~-----------~~----~~~~~~l~~~G~~v~~ 290 (555)
T 3i28_A 236 DMSHGYVTVKPRVRLHFVELG----------SGPAVCLCHGFPESWY-----------SW----RYQIPALAQAGYRVLA 290 (555)
T ss_dssp GSEEEEEEEETTEEEEEEEEC----------SSSEEEEECCTTCCGG-----------GG----TTHHHHHHHTTCEEEE
T ss_pred ccceeEEEeCCCcEEEEEEcC----------CCCEEEEEeCCCCchh-----------HH----HHHHHHHHhCCCEEEE
Confidence 345556666799998866541 2588999999742211 12 1356678899999999
Q ss_pred cCCCCCCCCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 718 GPTTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
.+.+|+|.+.... .......+|+.++++.+ +.+++.++|||+||.+++.++.++|++++++|++++.
T Consensus 291 ---~D~~G~G~S~~~~~~~~~~~~~~~~d~~~~~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 361 (555)
T 3i28_A 291 ---MDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKL------GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTP 361 (555)
T ss_dssp ---ECCTTSTTSCCCSCGGGGSHHHHHHHHHHHHHHH------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred ---ecCCCCCCCCCCCCcccccHHHHHHHHHHHHHHc------CCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccC
Confidence 5666778775432 22455667777777665 3468999999999999999999999999999998875
Q ss_pred CCCCCCCCCCc-----------------------------------------------------------c-c---c-ch
Q 002194 794 YNRTLTPFGFQ-----------------------------------------------------------N-E---D-RT 809 (954)
Q Consensus 794 ~~~~~~~~~~~-----------------------------------------------------------~-~---~-~~ 809 (954)
........... . . . ..
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (555)
T 3i28_A 362 FIPANPNMSPLESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRM 441 (555)
T ss_dssp CCCCCTTSCHHHHHHTCGGGHHHHHHHSTTHHHHHHHHCHHHHHHHHSCCTTSCCCCCSSHHHHTSSSTTSCSSCCCCTT
T ss_pred CCCCCcccchHHHHhcCCccchhHHhhCCCchHHHHhhhHHHHHHHHhccccccccccccccccccccccCccccccccc
Confidence 43211100000 0 0 0 00
Q ss_pred h-hhcHHHH----------------------HhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEE
Q 002194 810 L-WEATSTY----------------------VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR 866 (954)
Q Consensus 810 ~-~~~~~~~----------------------~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~ 866 (954)
. .+....| ...+....+.++++|+|++||++|..+| ...++.+.+.+. +++
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~--~~~~~~~~~~~~----~~~ 515 (555)
T 3i28_A 442 VTEEEIQFYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLV--PQMSQHMEDWIP----HLK 515 (555)
T ss_dssp CCHHHHHHHHHHHTTTTTHHHHHTTSCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSC--GGGGTTGGGTCT----TCE
T ss_pred cCHHHHHHHHHHHhcccchhHHHHHHhccccchhhccccccccccCEEEEEeCCCCCcC--HHHHHHHHhhCC----Cce
Confidence 0 0000000 0012223445788999999999999998 888877766553 358
Q ss_pred EEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 867 LVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 867 ~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
+++++++||... .+....+.+.|.+||++...
T Consensus 516 ~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~~~~ 547 (555)
T 3i28_A 516 RGHIEDCGHWTQ-MDKPTEVNQILIKWLDSDAR 547 (555)
T ss_dssp EEEETTCCSCHH-HHSHHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCCCcc-hhCHHHHHHHHHHHHHhccC
Confidence 899999999763 46677888999999998764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.7e-13 Score=155.63 Aligned_cols=311 Identities=13% Similarity=0.086 Sum_probs=184.8
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEc--cCCCCCCceeeeecCCCC
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQL--FPDGKLGQEIEIQGFPDG 188 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~--~~~g~~~~~~~lt~~~~~ 188 (954)
+..++|||||++|+....+ +.|.+|++ .+ ++ .+..++.+
T Consensus 181 ~~~v~~spdg~~l~v~~~d---------------------------------~~V~v~D~~~~t----~~--~~~~i~~g 221 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRD---------------------------------ARIDMIDLWAKE----PT--KVAEIKIG 221 (543)
T ss_dssp EEEEEECTTSCEEEEEETT---------------------------------SEEEEEETTSSS----CE--EEEEEECC
T ss_pred cceEEECCCCCEEEEECCC---------------------------------CeEEEEECcCCC----Cc--EEEEEecC
Confidence 3467799999998877654 47899998 32 22 12223344
Q ss_pred CcccceeecC----CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc-------cccccceeEecCCeE
Q 002194 189 AKLNFVTWSQ----DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-------NAIFDNFVWVNNSTL 257 (954)
Q Consensus 189 ~~~~~~~wSP----DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~-------~~~~~~~~wspDG~~ 257 (954)
....+++||| ||++|+.... ....|.++|..+++..+......... ...+..+.+|||++.
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~--------~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~ 293 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAY--------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE 293 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEE--------ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred CCcceEEeCCCcCCCCCEEEEEEc--------cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence 5678899999 9999877653 14578888988887765443221000 001456789999887
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce---eEcCCCcc
Q 002194 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV---KEIGPPAV 333 (954)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~---~~l~~~~~ 333 (954)
++++.. ....|+++|. +++. ..+.....
T Consensus 294 ~~vs~~------------------------------------------------~~g~i~vvd~~~~~~l~~~~i~~~~~ 325 (543)
T 1nir_A 294 FIVNVK------------------------------------------------ETGKVLLVNYKDIDNLTVTSIGAAPF 325 (543)
T ss_dssp EEEEET------------------------------------------------TTTEEEEEECTTSSSCEEEEEECCSS
T ss_pred EEEEEC------------------------------------------------CCCeEEEEEecCCCcceeEEeccCcC
Confidence 776510 2356888998 5432 23333355
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCcccee-eccCCCC
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN-WRSDKPS 412 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~-wspDg~~ 412 (954)
..++.|||||++++...... ++|.+||+++++........ ..|. .+ +... ++||+..
T Consensus 326 ~~~~~~spdg~~l~va~~~~------------~~v~v~D~~tg~l~~~i~~g---~~ph------~g-~g~~~~~p~~g~ 383 (543)
T 1nir_A 326 LHDGGWDSSHRYFMTAANNS------------NKVAVIDSKDRRLSALVDVG---KTPH------PG-RGANFVHPKYGP 383 (543)
T ss_dssp CCCEEECTTSCEEEEEEGGG------------TEEEEEETTTTEEEEEEECS---SSBC------CT-TCEEEEETTTEE
T ss_pred ccCceECCCCCEEEEEecCC------------CeEEEEECCCCeEEEeeccC---CCCC------CC-CCcccCCCCCcc
Confidence 67889999999987776432 28999999977654322210 1111 11 2233 3688655
Q ss_pred ceEEEEeccCCCccccccCCCeEEEEecCCCC-----CCCceEEeecccccCceeeccCCceEEEEEeccc---cceEEE
Q 002194 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ-----GEGPEILHKLDLRYGGISWCDDSLALVYESWYKT---RRTRTW 484 (954)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~---~~~~l~ 484 (954)
+++. .. ...+.|.+|+.++.. ....+.+.........+.++|||++|+....-+. ....|.
T Consensus 384 ~~~s-~~----------~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 384 VWST-SH----------LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp EEEE-EB----------SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEE
T ss_pred EEEe-cc----------CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEE
Confidence 4333 11 124578889873311 1222344433444567999999999988652111 013588
Q ss_pred EEcCCCCCCCcEEEe-------cCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEE
Q 002194 485 VISPGSKDVAPRILF-------DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLF 557 (954)
Q Consensus 485 ~~d~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 557 (954)
++|++++......+. ......+.. +.|+|||++|++..... . .....|.+|
T Consensus 453 v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~g~~~~~s~~~~-------------~---~~~~~i~v~ 510 (543)
T 1nir_A 453 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ------PEYNKRGDEVWFSVWNG-------------K---NDSSALVVV 510 (543)
T ss_dssp EEETTCTTSCCEEECHHHHHCCCSSCCEEEE------EEECSSSSEEEEEEECC-------------T---TSCCEEEEE
T ss_pred EEECCCCCCCeEEeechhhcccCCCCCceEe------ccCCCCCCEEEEEeecC-------------C---CCCCeEEEE
Confidence 888887632213321 011111112 78999999999886321 0 112358999
Q ss_pred ECCCCCeEEEeccC
Q 002194 558 DINTGSKERIWESD 571 (954)
Q Consensus 558 d~~~g~~~~l~~~~ 571 (954)
|.+|++........
T Consensus 511 D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 511 DDKTLKLKAVVKDP 524 (543)
T ss_dssp ETTTTEEEEEECCT
T ss_pred ECCCceEEEeecCC
Confidence 99999877665543
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=153.69 Aligned_cols=196 Identities=15% Similarity=0.133 Sum_probs=129.5
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc----hh--hHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN----DR--FVEQLVACA 743 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~----~~--~~~~~~~D~ 743 (954)
.|+||++||.+.... .|. .....|++ ||.|++ .+..|+|.+... .. ......+|+
T Consensus 20 ~p~vv~~HG~~~~~~-----------~~~----~~~~~l~~-g~~v~~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~ 80 (269)
T 4dnp_A 20 ERVLVLAHGFGTDQS-----------AWN----RILPFFLR-DYRVVL---YDLVCAGSVNPDFFDFRRYTTLDPYVDDL 80 (269)
T ss_dssp SSEEEEECCTTCCGG-----------GGT----TTGGGGTT-TCEEEE---ECCTTSTTSCGGGCCTTTCSSSHHHHHHH
T ss_pred CCEEEEEeCCCCcHH-----------HHH----HHHHHHhC-CcEEEE---EcCCCCCCCCCCCCCccccCcHHHHHHHH
Confidence 589999999642211 121 12334555 999999 666678877441 11 245556666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC-C--CCcccc-----------ch
Q 002194 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-F--GFQNED-----------RT 809 (954)
Q Consensus 744 ~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-~--~~~~~~-----------~~ 809 (954)
.+.++.+ +.+++.++|||+||.+++.++.++|++++++|++++........ + .+.... ..
T Consensus 81 ~~~~~~~------~~~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (269)
T 4dnp_A 81 LHILDAL------GIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYE 154 (269)
T ss_dssp HHHHHHT------TCCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTBCCSBCHHHHHHHHHHHHHCHH
T ss_pred HHHHHhc------CCCeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHhccccchHHHHHHHHhccccHH
Confidence 6666554 34589999999999999999999999999999999864321110 0 000000 00
Q ss_pred hh-----------------h----------------cHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHH
Q 002194 810 LW-----------------E----------------ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (954)
Q Consensus 810 ~~-----------------~----------------~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (954)
.| . ....+...+....+.++++|+|+++|++|..+| ...+.++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~ 232 (269)
T 4dnp_A 155 AWVNGFAPLAVGADVPAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVP--ASVATYLKN 232 (269)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGGCCSCEEEEEEESBTTBC--HHHHHHHHH
T ss_pred HHHHHhhhhhccCCChhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhccccCCEEEEecCCCcccC--HHHHHHHHH
Confidence 00 0 000111223445667889999999999999998 888888877
Q ss_pred HHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 857 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.+... ++++++++++|... .++.+.+.+.|.+||++
T Consensus 233 ~~~~~---~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~ 268 (269)
T 4dnp_A 233 HLGGK---NTVHWLNIEGHLPH-LSAPTLLAQELRRALSH 268 (269)
T ss_dssp HSSSC---EEEEEEEEESSCHH-HHCHHHHHHHHHHHHC-
T ss_pred hCCCC---ceEEEeCCCCCCcc-ccCHHHHHHHHHHHHhh
Confidence 76432 79999999999864 45667788888888765
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.9e-13 Score=144.33 Aligned_cols=275 Identities=11% Similarity=0.050 Sum_probs=184.9
Q ss_pred eecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcccce
Q 002194 115 SFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFV 194 (954)
Q Consensus 115 ~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~ 194 (954)
-|+.||++|.|.... +. ..|+..+. || ...++|+. ...-
T Consensus 20 ~~~~~g~~iy~~n~~----------------------d~---------~~ly~~~~--dg--~~~~~l~~------~~~~ 58 (302)
T 3s25_A 20 LFCESDGEVFFSNTN----------------------DN---------GRLYAMNI--DG--SNIHKLSN------DTAM 58 (302)
T ss_dssp CEEEETTEEEEEEGG----------------------GT---------TEEEEEET--TS--CSCEEEEE------EEEE
T ss_pred EEEEeCCEEEEEeCC----------------------CC---------ceEEEEcC--CC--CCCEEccC------Ccee
Confidence 478999999998652 10 26777766 65 55677753 1124
Q ss_pred eecCCCCeEEEEEeeccccCC-----CCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 195 TWSQDGKHLAFSIRIDAEDSS-----SSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~-----~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
-+++||++|+|+......... .....||+++++|++.++|+... ...|+++|++|+++...
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~---------~~~~s~~g~~Iy~~~~~----- 124 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP---------CIYASLIGNYIYYLHYD----- 124 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC---------EEEEEEETTEEEEEEES-----
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC---------ccEEEEeCCEEEEEeec-----
Confidence 568999999999753210000 12578999999999888886533 23689999999998100
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCC-ceeEcCCCccccccccCCCCcEEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEIGPPAVYTSLDPSPDEKYILI 348 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G-~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (954)
.. +...||+++++| ..++|+.... ..++|||++|+|
T Consensus 125 --------------~~--------------------------~~~~Iy~~~~dGs~~~~lt~~~~---~~~~~~g~~iy~ 161 (302)
T 3s25_A 125 --------------TQ--------------------------TATSLYRIRIDGEEKKKIKNHYL---FTCNTSDRYFYY 161 (302)
T ss_dssp --------------SS--------------------------SCEEEEEEETTSCCCEEEESSCC---CCSEEETTEEEE
T ss_pred --------------CC--------------------------CCceEEEEECCCCCeEEEeCCCc---eEeeEECCEEEE
Confidence 00 345799999955 6677776522 567999999999
Q ss_pred EeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (954)
++... .+|++.+++|+..+.|.... ....++|+|+.|+|. +..
T Consensus 162 t~~g~------------~~Iy~~~l~g~~~~~l~~~~----------------~~~~~~P~g~~iy~t-~~~-------- 204 (302)
T 3s25_A 162 NNPKN------------GQLYRYDTASQSEALFYDCN----------------CYKPVVLDDTNVYYM-DVN-------- 204 (302)
T ss_dssp ECTTT------------CCEEEEETTTTEEEEEECSC----------------EEEEEEEETTEEEEE-EGG--------
T ss_pred EeCCC------------ceEEEEECCCCCEEEEeCCC----------------ccceeeecCCEEEEE-EcC--------
Confidence 98522 28999999998877775421 112355999987664 221
Q ss_pred ccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccC
Q 002194 429 VTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYS 508 (954)
Q Consensus 429 ~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~ 508 (954)
....|++.++ +|+..++|+.... +.|+|+|++|+|...... ..|+.+++++. ..+.+.....
T Consensus 205 --~~~~I~~~~l---dG~~~~~Lt~~~~----~~~~~~g~~Iy~~~~~~~--~~i~~~~~DG~--~r~~l~~~~~----- 266 (302)
T 3s25_A 205 --RDNAIVHVNI---NNPNPVVLTEANI----EHYNVYGSLIFYQRGGDN--PALCVVKNDGT--GFKELAKGEF----- 266 (302)
T ss_dssp --GTTEEEEECS---SSCCCEECSCSCE----EEEEEETTEEEEEECSSS--CEEEEEETTSC--CCEEEEESCE-----
T ss_pred --CCcEEEEEEC---CCCCeEEEeCCCc----ceEEECCCEEEEEECCCC--cEEEEEECCCC--ccEEeeCCcc-----
Confidence 1247999986 7888888865432 569999999998865543 68999999985 4455554321
Q ss_pred CCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEe
Q 002194 509 DPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (954)
Q Consensus 509 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 568 (954)
...++.+.+|+|.... ...|+++.+++...++|.
T Consensus 267 ------~~i~i~~d~Iy~td~~--------------------~~~i~~~~~dGs~~~~l~ 300 (302)
T 3s25_A 267 ------CNINVTSQYVYFTDFV--------------------SNKEYCTSTQNPDTIKAL 300 (302)
T ss_dssp ------EEEEECSSEEEEEETT--------------------TCCEEEEESSSCCSCEEC
T ss_pred ------ceEEEeCCEEEEEECC--------------------CCeEEEEECCCCCceEec
Confidence 3467788888887621 113778887765555543
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=156.43 Aligned_cols=197 Identities=16% Similarity=0.147 Sum_probs=132.5
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVE 748 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~ 748 (954)
.|+||++||.+.... .| .......++++||.|++ .+.+|+|.+.... .......+|+.++++
T Consensus 43 ~~~vv~lHG~~~~~~-----------~~---~~~~~~~l~~~g~~vi~---~D~~G~G~s~~~~~~~~~~~~~~~~~~l~ 105 (293)
T 3hss_A 43 GDPVVFIAGRGGAGR-----------TW---HPHQVPAFLAAGYRCIT---FDNRGIGATENAEGFTTQTMVADTAALIE 105 (293)
T ss_dssp SEEEEEECCTTCCGG-----------GG---TTTTHHHHHHTTEEEEE---ECCTTSGGGTTCCSCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCchh-----------hc---chhhhhhHhhcCCeEEE---EccCCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 578999999642211 11 11235677899999999 5556777765433 234566777777777
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCC--------------CCcccc-------
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF--------------GFQNED------- 807 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~--------------~~~~~~------- 807 (954)
.+ +.+++.++|||+||.+++.++.++|++++++|+++|......... ......
T Consensus 106 ~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (293)
T 3hss_A 106 TL------DIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLL 179 (293)
T ss_dssp HH------TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred hc------CCCcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhhcccchhhHHHHHHHh
Confidence 66 335899999999999999999999999999999998643211000 000000
Q ss_pred ----chhhhcH---H----HH------------------HhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHH
Q 002194 808 ----RTLWEAT---S----TY------------------VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNAL 858 (954)
Q Consensus 808 ----~~~~~~~---~----~~------------------~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l 858 (954)
....... . .+ ...+....+.++++|+|+++|++|..+| .+.++++.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~--~~~~~~~~~~~ 257 (293)
T 3hss_A 180 ENFSRKTLNDDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIAAPVLVIGFADDVVTP--PYLGREVADAL 257 (293)
T ss_dssp HHSCHHHHTCHHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHTTCCSCEEEEEETTCSSSC--HHHHHHHHHHS
T ss_pred hhcccccccccccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHhhCCCCEEEEEeCCCCCCC--HHHHHHHHHHC
Confidence 0000000 0 00 0112233457789999999999999998 88888887766
Q ss_pred HhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 859 KGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 859 ~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
. ++++++++++||... .++...+.+.|.+||++
T Consensus 258 ~----~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~ 290 (293)
T 3hss_A 258 P----NGRYLQIPDAGHLGF-FERPEAVNTAMLKFFAS 290 (293)
T ss_dssp T----TEEEEEETTCCTTHH-HHSHHHHHHHHHHHHHT
T ss_pred C----CceEEEeCCCcchHh-hhCHHHHHHHHHHHHHh
Confidence 3 369999999999863 45667788888888875
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-13 Score=152.26 Aligned_cols=278 Identities=11% Similarity=0.083 Sum_probs=169.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++|+..+.+ ..|.+|++.+ + .....+.. +..
T Consensus 68 ~V~~~~~sp~~~~l~s~s~D---------------------------------~~v~iWd~~~-~--~~~~~~~~--h~~ 109 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSASQD---------------------------------GRLIVWNALT-S--QKTHAIKL--HCP 109 (380)
T ss_dssp CEEEEEECTTSSCEEEEETT---------------------------------SEEEEEETTT-T--EEEEEEEC--CCT
T ss_pred EEEEEEEcCCCCEEEEEeCC---------------------------------CeEEEEECCC-C--ccceEEec--CCC
Confidence 56788999999999998876 5899999854 2 22333433 224
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce--------eecccCCCccccccccceeEecCCe-EEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--------RPLFQSPDIYLNAIFDNFVWVNNST-LLVC 260 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~--------~~lt~~~~~~~~~~~~~~~wspDG~-~l~~ 260 (954)
.+...+|+|||+.|+... .++...|| ++.+... +.++.+. +.+..+.|+|++. .|+.
T Consensus 110 ~v~~~~~s~~g~~las~~-------~d~~v~iw--~~~~~~~~~~~~~~~~~~~gh~-----~~v~~~~~~~~~~~~l~s 175 (380)
T 3iz6_a 110 WVMECAFAPNGQSVACGG-------LDSACSIF--NLSSQADRDGNMPVSRVLTGHK-----GYASSCQYVPDQETRLIT 175 (380)
T ss_dssp TCCCCEECTTSSEEEECC-------SSSCCEEE--ECCCCSSCCCSSTTCCBCCCCS-----SCCCCCBCCSSSSSCEEE
T ss_pred CEEEEEECCCCCEEEEee-------CCCcEEEE--ECCCCccccCCccceeeccCCC-----cceEEEEEecCCCCEEEE
Confidence 688899999999988743 33344444 5443211 1121111 1266788998754 4554
Q ss_pred EecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcC------CC-c
Q 002194 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG------PP-A 332 (954)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~------~~-~ 332 (954)
.. ....|.++|+ +|+..... .. .
T Consensus 176 ~s-------------------------------------------------~D~~i~~wd~~~~~~~~~~~~~~~~~h~~ 206 (380)
T 3iz6_a 176 GS-------------------------------------------------GDQTCVLWDVTTGQRISIFGSEFPSGHTA 206 (380)
T ss_dssp EC-------------------------------------------------TTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred EC-------------------------------------------------CCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence 41 1234666777 66433221 11 4
Q ss_pred cccccccCC-CCcEEEEEeecCCcccccccCCCCcceEEEecc-Cc-eEEEeccCCCcccCCccccccccCccceeeccC
Q 002194 333 VYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (954)
Q Consensus 333 ~~~~~~~Sp-DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~-g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD 409 (954)
.+..+.|+| |++.|+..+.+ +.+.+||+. ++ ..+.+.. +...+..++|+||
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D-------------~~v~~wd~~~~~~~~~~~~~-------------h~~~v~~v~~~p~ 260 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCD-------------TTVRLWDLRITSRAVRTYHG-------------HEGDINSVKFFPD 260 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETT-------------SCEEEEETTTTCCCCEEECC-------------CSSCCCEEEECTT
T ss_pred CeEEEEeecCCCCEEEEEECC-------------CeEEEEECCCCCcceEEECC-------------cCCCeEEEEEecC
Confidence 566778866 88888877633 389999987 32 2233332 2245678999999
Q ss_pred CCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEeecc-------cccCceeeccCCceEEEEEeccccce
Q 002194 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLD-------LRYGGISWCDDSLALVYESWYKTRRT 481 (954)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~-------~~~~~~~~spDg~~l~~~~~~~~~~~ 481 (954)
|+.++.. +..+.|.+|++ ..++. ..+.... ..+..++|+|+|+.|+....++
T Consensus 261 ~~~l~s~-------------s~D~~i~lwd~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---- 320 (380)
T 3iz6_a 261 GQRFGTG-------------SDDGTCRLFDM---RTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG---- 320 (380)
T ss_dssp SSEEEEE-------------CSSSCEEEEET---TTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS----
T ss_pred CCeEEEE-------------cCCCeEEEEEC---CCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC----
Confidence 9876554 44568899996 33332 2222211 1256789999999988775433
Q ss_pred EEEEEcCCCCCCCcEEEe----cCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEE
Q 002194 482 RTWVISPGSKDVAPRILF----DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLF 557 (954)
Q Consensus 482 ~l~~~d~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 557 (954)
.|+++|...+ +..... ..+...+.. +.|+|||++|+.... ...|.+|
T Consensus 321 ~i~vwd~~~~--~~~~~~~~~~~~h~~~v~~------l~~s~dg~~l~sgs~---------------------D~~i~iW 371 (380)
T 3iz6_a 321 DCYVWDTLLA--EMVLNLGTLQNSHEGRISC------LGLSSDGSALCTGSW---------------------DKNLKIW 371 (380)
T ss_dssp CEEEEETTTC--CEEEEECCSCSSCCCCCCE------EEECSSSSEEEEECT---------------------TSCEEEE
T ss_pred CEEEEECCCC--ceEEEEecccCCCCCceEE------EEECCCCCEEEEeeC---------------------CCCEEEE
Confidence 3556666554 222111 122222222 789999999887652 2248999
Q ss_pred ECCCCC
Q 002194 558 DINTGS 563 (954)
Q Consensus 558 d~~~g~ 563 (954)
++.+++
T Consensus 372 ~~~~~~ 377 (380)
T 3iz6_a 372 AFSGHR 377 (380)
T ss_dssp ECCSSS
T ss_pred ecCCCc
Confidence 987654
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=152.03 Aligned_cols=198 Identities=10% Similarity=0.005 Sum_probs=130.1
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~a 746 (954)
.|+||++||.+... ..| ......|+++||.|++ .+..|+|.+.... .......+|+.+.
T Consensus 12 ~~~vvllHG~~~~~-----------~~~----~~~~~~l~~~g~~v~~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~ 73 (267)
T 3sty_A 12 KKHFVLVHAAFHGA-----------WCW----YKIVALMRSSGHNVTA---LDLGASGINPKQALQIPNFSDYLSPLMEF 73 (267)
T ss_dssp CCEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEE---ECCTTSTTCSCCGGGCCSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCc-----------chH----HHHHHHHHhcCCeEEE---eccccCCCCCCcCCccCCHHHHHHHHHHH
Confidence 68999999964211 111 2456678889999999 6667888876542 2345556666655
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC--------------CC---Cc--cc-
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP--------------FG---FQ--NE- 806 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~--------------~~---~~--~~- 806 (954)
++.+ + +.+++.|+|||+||.+++.++.++|++++++|++++........ +. +. ..
T Consensus 74 l~~l---~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (267)
T 3sty_A 74 MASL---P--ANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGP 148 (267)
T ss_dssp HHTS---C--TTSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCCCBTTBCHHHHHHHHHHTTTTCTTCEEECTTCT
T ss_pred HHhc---C--CCCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCCCCCcchHHHHHHHhcccchhhhhhhhhhhhhh
Confidence 5543 1 34689999999999999999999999999999988754211100 00 00 00
Q ss_pred ---cchhh-----------h--cH------------------HHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHH
Q 002194 807 ---DRTLW-----------E--AT------------------STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSD 852 (954)
Q Consensus 807 ---~~~~~-----------~--~~------------------~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~ 852 (954)
....+ . .. ..+............++|+|+++|++|..+| ++..+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~ 226 (267)
T 3sty_A 149 TNPPTTLIAGPKFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALK--KEFLK 226 (267)
T ss_dssp TSCCCEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCEECCCHHHHHHHCCCCTTTGGGSCEEEEECCCSCHHH--HHHHH
T ss_pred hcccchhhhhHHHHHHhhcccCCHHHHHHHHHhhccchhHHHHHhhcchhcccccccCCCEEEEEeCCCCccC--HHHHH
Confidence 00000 0 00 0011111222222235899999999999988 88888
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 853 RFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
++.+.+.. ++++++|++||... .++.+.+.+.|.+|++++
T Consensus 227 ~~~~~~~~----~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 266 (267)
T 3sty_A 227 LMIEKNPP----DEVKEIEGSDHVTM-MSKPQQLFTTLLSIANKY 266 (267)
T ss_dssp HHHHHSCC----SEEEECTTCCSCHH-HHSHHHHHHHHHHHHHHC
T ss_pred HHHHhCCC----ceEEEeCCCCcccc-ccChHHHHHHHHHHHHhc
Confidence 87776632 58999999999863 566788889999999874
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-13 Score=155.97 Aligned_cols=126 Identities=8% Similarity=0.045 Sum_probs=76.3
Q ss_pred ccccccccCCCC-cEEEEEeecCCcccccccCCCCcceEEEeccCceE-----EEeccCCCcccCCccccccccCcccee
Q 002194 332 AVYTSLDPSPDE-KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-----RELCDLPLAEDIPIAFNSVRKGMRSIN 405 (954)
Q Consensus 332 ~~~~~~~~SpDG-k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-----~~l~~~~~~~~~p~~~~~~~~g~~~~~ 405 (954)
..+..++|+||| +.|+..+.+ +.|.+||+..+.. +.+..+...... ..+......+..++
T Consensus 227 ~~v~~~~~~p~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~ 292 (447)
T 3dw8_B 227 EVITAAEFHPNSCNTFVYSSSK-------------GTIRLCDMRASALCDRHSKLFEEPEDPSNR-SFFSEIISSISDVK 292 (447)
T ss_dssp CCEEEEEECSSCTTEEEEEETT-------------SCEEEEETTTCSSSCTTCEEECCC-----C-CHHHHHTTCEEEEE
T ss_pred cceEEEEECCCCCcEEEEEeCC-------------CeEEEEECcCCccccceeeEeccCCCcccc-ccccccCceEEEEE
Confidence 667889999999 788877743 3899999986542 333332110000 00111122567899
Q ss_pred eccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCC-CCCceEEeecccc---------------cCceeeccCCce
Q 002194 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ-GEGPEILHKLDLR---------------YGGISWCDDSLA 469 (954)
Q Consensus 406 wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-g~~~~~l~~~~~~---------------~~~~~~spDg~~ 469 (954)
|+|||+.++.. +. +.|.+|++ .. +.....+..+... ...++|+|||+.
T Consensus 293 ~s~~g~~l~~~-------------~~-~~v~iwd~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~ 356 (447)
T 3dw8_B 293 FSHSGRYMMTR-------------DY-LSVKVWDL--NMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV 356 (447)
T ss_dssp ECTTSSEEEEE-------------ES-SEEEEEET--TCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE
T ss_pred ECCCCCEEEEe-------------eC-CeEEEEeC--CCCccccceeeccccccccccccccccccccceEEEECCCCCE
Confidence 99999976654 33 68999996 22 3333444433321 123899999999
Q ss_pred EEEEEeccccceEEEEEcCCCC
Q 002194 470 LVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
|+..+.++ .|+++|+.++
T Consensus 357 l~s~s~dg----~v~iwd~~~~ 374 (447)
T 3dw8_B 357 VMTGSYNN----FFRMFDRNTK 374 (447)
T ss_dssp EEEECSTT----EEEEEETTTC
T ss_pred EEEeccCC----EEEEEEcCCC
Confidence 97665432 4666676664
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-14 Score=155.09 Aligned_cols=216 Identities=14% Similarity=0.130 Sum_probs=137.1
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIG 725 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G 725 (954)
.+|.++++..+-|++- ..+.+.||++||++.... .|. .....|+. .||.|++ .|.+|
T Consensus 35 ~~g~~l~y~~~G~~~~----~~~g~plvllHG~~~~~~-----------~w~----~~~~~l~~~~~~~Via---~D~rG 92 (330)
T 3nwo_A 35 FGDHETWVQVTTPENA----QPHALPLIVLHGGPGMAH-----------NYV----ANIAALADETGRTVIH---YDQVG 92 (330)
T ss_dssp ETTEEEEEEEECCSSC----CTTCCCEEEECCTTTCCS-----------GGG----GGGGGHHHHHTCCEEE---ECCTT
T ss_pred ecCcEEEEEEecCccC----CCCCCcEEEECCCCCCch-----------hHH----HHHHHhccccCcEEEE---ECCCC
Confidence 4788998888866321 101124777899753211 111 12234554 6999999 67778
Q ss_pred CCCccc--ch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC-
Q 002194 726 EGDEEA--ND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL- 798 (954)
Q Consensus 726 ~G~~~~--~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~- 798 (954)
+|.+.. .. .......+|+.+.++.+ +.+++.|+||||||.+++.+|.++|++++++|++++......
T Consensus 93 ~G~S~~~~~~~~~~~~~~~~a~dl~~ll~~l------g~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~~~~~~~ 166 (330)
T 3nwo_A 93 CGNSTHLPDAPADFWTPQLFVDEFHAVCTAL------GIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASMRLW 166 (330)
T ss_dssp STTSCCCTTSCGGGCCHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCCSBHHHH
T ss_pred CCCCCCCCCCccccccHHHHHHHHHHHHHHc------CCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCCcchHHH
Confidence 888754 11 12455677777777765 235899999999999999999999999999998876432100
Q ss_pred ----------CCC-------------CCcc-cc--------------chhhh------------cHHHHH----------
Q 002194 799 ----------TPF-------------GFQN-ED--------------RTLWE------------ATSTYV---------- 818 (954)
Q Consensus 799 ----------~~~-------------~~~~-~~--------------~~~~~------------~~~~~~---------- 818 (954)
.+. .+.. .. ...+. .+..|.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 3nwo_A 167 SEAAGDLRAQLPAETRAALDRHEAAGTITHPDYLQAAAEFYRRHVCRVVPTPQDFADSVAQMEAEPTVYHTMNGPNEFHV 246 (330)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHHHHSCHHHHHHTCSCSSSC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccccCCCHHHHHHHHhhccchhhhhcccCchhhhh
Confidence 000 0000 00 00000 000011
Q ss_pred -----hcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHH
Q 002194 819 -----EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (954)
Q Consensus 819 -----~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~f 893 (954)
.++....+.++++|+||++|++|..+| ..+.++.+.+ .+.+++++|++||... .+..+.+.+.|.+|
T Consensus 247 ~~~~~~~~~~~~l~~i~~P~Lvi~G~~D~~~p---~~~~~~~~~i----p~~~~~~i~~~gH~~~-~e~p~~~~~~i~~F 318 (330)
T 3nwo_A 247 VGTLGDWSVIDRLPDVTAPVLVIAGEHDEATP---KTWQPFVDHI----PDVRSHVFPGTSHCTH-LEKPEEFRAVVAQF 318 (330)
T ss_dssp CSGGGGCBCGGGGGGCCSCEEEEEETTCSSCH---HHHHHHHHHC----SSEEEEEETTCCTTHH-HHSHHHHHHHHHHH
T ss_pred hccccCCchhhhcccCCCCeEEEeeCCCccCh---HHHHHHHHhC----CCCcEEEeCCCCCchh-hcCHHHHHHHHHHH
Confidence 112223456789999999999998765 4566665544 2479999999999864 56778889999999
Q ss_pred HHHhc
Q 002194 894 LQKYC 898 (954)
Q Consensus 894 l~~~l 898 (954)
|.++.
T Consensus 319 L~~~~ 323 (330)
T 3nwo_A 319 LHQHD 323 (330)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 98864
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-12 Score=148.04 Aligned_cols=257 Identities=9% Similarity=0.032 Sum_probs=146.1
Q ss_pred ceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcccc
Q 002194 114 LSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNF 193 (954)
Q Consensus 114 ~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~ 193 (954)
..|+|||++|+....+ +.|.+|++.. +....+. ..+...+..
T Consensus 103 ~~~~~~~~~l~~~~~d---------------------------------g~i~iwd~~~----~~~~~~~-~~h~~~v~~ 144 (420)
T 3vl1_A 103 DTAKLQMRRFILGTTE---------------------------------GDIKVLDSNF----NLQREID-QAHVSEITK 144 (420)
T ss_dssp EEECSSSCEEEEEETT---------------------------------SCEEEECTTS----CEEEEET-TSSSSCEEE
T ss_pred EEEecCCCEEEEEECC---------------------------------CCEEEEeCCC----cceeeec-ccccCccEE
Confidence 4689999999998775 5789999853 3333331 113347899
Q ss_pred eeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCC
Q 002194 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (954)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~ 273 (954)
+.|+|||+.|+... ....|.++|+++++........... +..++|+|||+.|+....+..-.
T Consensus 145 ~~~~~~~~~l~s~s---------~d~~i~iwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~~~d~~v~----- 206 (420)
T 3vl1_A 145 LKFFPSGEALISSS---------QDMQLKIWSVKDGSNPRTLIGHRAT----VTDIAIIDRGRNVLSASLDGTIR----- 206 (420)
T ss_dssp EEECTTSSEEEEEE---------TTSEEEEEETTTCCCCEEEECCSSC----EEEEEEETTTTEEEEEETTSCEE-----
T ss_pred EEECCCCCEEEEEe---------CCCeEEEEeCCCCcCceEEcCCCCc----EEEEEEcCCCCEEEEEcCCCcEE-----
Confidence 99999999888755 2557888898876654333322222 67899999999998762211100
Q ss_pred CCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--CCceeEcC-CCccccccccCCCCcEEEEEe
Q 002194 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIG-PPAVYTSLDPSPDEKYILISS 350 (954)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~--~G~~~~l~-~~~~~~~~~~SpDGk~l~~~s 350 (954)
.| ........ +. +..+.+ ....+..+.. .+...... ....+..++|||||++|+..+
T Consensus 207 ------iw-d~~~~~~~--~~----~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (420)
T 3vl1_A 207 ------LW-ECGTGTTI--HT----FNRKEN-------PHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH 266 (420)
T ss_dssp ------EE-ETTTTEEE--EE----ECBTTB-------TTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE
T ss_pred ------Ee-ECCCCcee--EE----eecCCC-------CCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc
Confidence 00 00000000 00 000000 0011112211 11111111 125567899999999998877
Q ss_pred ecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccc
Q 002194 351 IHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEV 429 (954)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~ 429 (954)
.+ +.+.+||+..++ ...+... ....+..++|+|||+.+++..
T Consensus 267 ~d-------------g~i~i~d~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~l~~g------------ 309 (420)
T 3vl1_A 267 VS-------------GVITVHNVFSKEQTIQLPSK------------FTCSCNSLTVDGNNANYIYAG------------ 309 (420)
T ss_dssp TT-------------SCEEEEETTTCCEEEEECCT------------TSSCEEEEEECSSCTTEEEEE------------
T ss_pred CC-------------CeEEEEECCCCceeEEcccc------------cCCCceeEEEeCCCCCEEEEE------------
Confidence 43 379999998654 3333221 113456899999999544431
Q ss_pred cCCCeEEEEecCCCCCCC-ceEEee-cccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 430 TPRDIIYTQQAEPVQGEG-PEILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 430 ~~~~~l~~~~~~~~~g~~-~~~l~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
+..+.|.+|++ .++.. ...+.. ....+..+ ++++|+.|+..+.++ ..+||.+..
T Consensus 310 ~~dg~i~vwd~--~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~--~v~iw~~~~ 365 (420)
T 3vl1_A 310 YENGMLAQWDL--RSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDT--SIKLDIISD 365 (420)
T ss_dssp ETTSEEEEEET--TCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTE--EEEEEEECC
T ss_pred eCCCeEEEEEc--CCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCc--cEEEEeccC
Confidence 33568999996 33333 345544 34444555 567888777664433 266776654
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.7e-14 Score=152.48 Aligned_cols=207 Identities=14% Similarity=0.098 Sum_probs=135.1
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|..+.....-| .|+||++||++... ..| ...+..|++ ||.|++ .+.+|+
T Consensus 55 ~~~~~~~~~~~g~----------~p~vv~lhG~~~~~-----------~~~----~~~~~~L~~-~~~v~~---~D~~G~ 105 (314)
T 3kxp_A 55 IGRITLNVREKGS----------GPLMLFFHGITSNS-----------AVF----EPLMIRLSD-RFTTIA---VDQRGH 105 (314)
T ss_dssp CSSCEEEEEEECC----------SSEEEEECCTTCCG-----------GGG----HHHHHTTTT-TSEEEE---ECCTTS
T ss_pred ECCEEEEEEecCC----------CCEEEEECCCCCCH-----------HHH----HHHHHHHHc-CCeEEE---EeCCCc
Confidence 4777777665422 47899999964211 111 123444444 799999 555677
Q ss_pred CCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC-----
Q 002194 727 GDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT----- 799 (954)
Q Consensus 727 G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~----- 799 (954)
|.+... ........+|+.++++++ +.++++++|||+||.+++.++.++|++++++|++++.......
T Consensus 106 G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 179 (314)
T 3kxp_A 106 GLSDKPETGYEANDYADDIAGLIRTL------ARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDAL 179 (314)
T ss_dssp TTSCCCSSCCSHHHHHHHHHHHHHHH------TSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHH
Confidence 776432 223456667777776665 2368999999999999999999999999999999875431100
Q ss_pred -------CCCCcccc--chhh---------hcHHHHH---------------------------hcCcccccCCCCCCEE
Q 002194 800 -------PFGFQNED--RTLW---------EATSTYV---------------------------EMSPFMSANKLKKPIL 834 (954)
Q Consensus 800 -------~~~~~~~~--~~~~---------~~~~~~~---------------------------~~sp~~~~~~~~~P~L 834 (954)
...+.... ...+ .....+. ..+....+.++++|+|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~L 259 (314)
T 3kxp_A 180 EARVNAGSQLFEDIKAVEAYLAGRYPNIPADAIRIRAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRDVTKPVL 259 (314)
T ss_dssp HHHTTTTCSCBSSHHHHHHHHHHHSTTSCHHHHHHHHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHHCCSCEE
T ss_pred HHHhhhchhhhcCHHHHHHHHHhhcccCchHHHHHHhhhhhcccccccccccChhhhhhhccccCcchhhHhhcCCCCEE
Confidence 00000000 0000 0000000 0033344567899999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 835 LVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 835 ii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+++|++|..+| .+.+.++.+.+.. ++++++|++||.+. .++...+.+.|.+||+
T Consensus 260 ii~G~~D~~~~--~~~~~~~~~~~~~----~~~~~~~g~gH~~~-~e~~~~~~~~i~~fl~ 313 (314)
T 3kxp_A 260 IVRGESSKLVS--AAALAKTSRLRPD----LPVVVVPGADHYVN-EVSPEITLKAITNFID 313 (314)
T ss_dssp EEEETTCSSSC--HHHHHHHHHHCTT----SCEEEETTCCSCHH-HHCHHHHHHHHHHHHH
T ss_pred EEecCCCccCC--HHHHHHHHHhCCC----ceEEEcCCCCCcch-hhCHHHHHHHHHHHHh
Confidence 99999999998 8888888877643 48889999999873 5556778888888886
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.56 E-value=8e-14 Score=147.42 Aligned_cols=211 Identities=18% Similarity=0.152 Sum_probs=138.7
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+++...+-|++ .+.|.||++||..... ..|. ..+..|+ .+|.|++ .|.+|+
T Consensus 9 ~~g~~l~y~~~g~~~------~~~~~vvllHG~~~~~-----------~~~~----~~~~~L~-~~~~vi~---~D~~G~ 63 (266)
T 2xua_A 9 VNGTELHYRIDGERH------GNAPWIVLSNSLGTDL-----------SMWA----PQVAALS-KHFRVLR---YDTRGH 63 (266)
T ss_dssp CSSSEEEEEEESCSS------SCCCEEEEECCTTCCG-----------GGGG----GGHHHHH-TTSEEEE---ECCTTS
T ss_pred ECCEEEEEEEcCCcc------CCCCeEEEecCccCCH-----------HHHH----HHHHHHh-cCeEEEE---ecCCCC
Confidence 478889887774421 0147899999953211 1121 2344454 5699999 677788
Q ss_pred CCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC-CC-
Q 002194 727 GDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-FG- 802 (954)
Q Consensus 727 G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-~~- 802 (954)
|.+... ........+|+.+.++.+ ..+++.++||||||.+++.+|.++|++++++|++++........ +.
T Consensus 64 G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~ 137 (266)
T 2xua_A 64 GHSEAPKGPYTIEQLTGDVLGLMDTL------KIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWVP 137 (266)
T ss_dssp TTSCCCSSCCCHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhc------CCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHHH
Confidence 887643 223556677777777665 23589999999999999999999999999999998754321000 00
Q ss_pred ---------Ccc---ccchhh-------hc---------------HH-------HHHhcCcccccCCCCCCEEEEEeCCC
Q 002194 803 ---------FQN---EDRTLW-------EA---------------TS-------TYVEMSPFMSANKLKKPILLVHGEED 841 (954)
Q Consensus 803 ---------~~~---~~~~~~-------~~---------------~~-------~~~~~sp~~~~~~~~~P~Lii~G~~D 841 (954)
... .....| .. .. .+...+....+.++++|+|+++|++|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D 217 (266)
T 2xua_A 138 RAVKARTEGMHALADAVLPRWFTADYMEREPVVLAMIRDVFVHTDKEGYASNCEAIDAADLRPEAPGIKVPALVISGTHD 217 (266)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHSCHHHHHHCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCGGGGGGCCSCEEEEEETTC
T ss_pred HHHHHHhcChHHHHHHHHHHHcCcccccCCHHHHHHHHHHHhhCCHHHHHHHHHHHhccCchhhhccCCCCEEEEEcCCC
Confidence 000 000000 00 00 01122333456778999999999999
Q ss_pred CCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 842 NNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 842 ~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
..+| ++.++++.+.+.. .++++++ +||... .+..+.+.+.+.+||.+
T Consensus 218 ~~~~--~~~~~~~~~~~~~----~~~~~~~-~gH~~~-~e~p~~~~~~i~~fl~~ 264 (266)
T 2xua_A 218 LAAT--PAQGRELAQAIAG----ARYVELD-ASHISN-IERADAFTKTVVDFLTE 264 (266)
T ss_dssp SSSC--HHHHHHHHHHSTT----CEEEEES-CCSSHH-HHTHHHHHHHHHHHHTC
T ss_pred CcCC--HHHHHHHHHhCCC----CEEEEec-CCCCch-hcCHHHHHHHHHHHHHh
Confidence 9998 8888888776643 4889999 999864 45567788888888853
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.6e-15 Score=155.98 Aligned_cols=191 Identities=14% Similarity=0.043 Sum_probs=127.4
Q ss_pred CCCCCCcEEEEeeChHHHHHHHHHHhCCCccc-EEEEeccCCCCCCCC---CCCccc---cchhhhcHHHHHhcCccccc
Q 002194 754 GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC-CGIARSGAYNRTLTP---FGFQNE---DRTLWEATSTYVEMSPFMSA 826 (954)
Q Consensus 754 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~-a~v~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~sp~~~~ 826 (954)
..+|++||+|+|+|+||+||+.+++.+|+.|+ +++++++........ ..+... ....++........+++..+
T Consensus 6 ~~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 85 (318)
T 2d81_A 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTPTANMKSWSGNQIASV 85 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSCGGGGSTTCCCCCHHHHHHHHHHBTTTBCCG
T ss_pred cCcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEecccccccchHHHHHHhhccCCCCCCHHHHHHHhhcccCChh
Confidence 45899999999999999999999999999999 887777632111100 000000 00011111111111455555
Q ss_pred CCCC-CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC--CcEEEEEeCCCCCcCCCccc------------------HHH
Q 002194 827 NKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHG--ALCRLVILPFESHGYAARES------------------IMH 885 (954)
Q Consensus 827 ~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~H~~~~~~~------------------~~~ 885 (954)
.+++ .|+||+||++|.+|| +.++++++++|+..+ .+++++.+++++|.+..... ..+
T Consensus 86 ~~l~~~Pvli~HG~~D~vVP--~~~s~~~~~~L~~~g~~~~ve~~~~~g~gH~~~~~~~~~~~~~c~~~~~pyi~~~~~d 163 (318)
T 2d81_A 86 ANLGQRKIYMWTGSSDTTVG--PNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTSPYISNCNYD 163 (318)
T ss_dssp GGGGGCEEEEEEETTCCSSC--HHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCTTCEEECSSC
T ss_pred HcCCCCcEEEEeCCCCCCcC--HHHHHHHHHHHHhcCCCcceEEEEeCCCCCCCccCCcccCccccccCCCCcccCCCCh
Confidence 5554 599999999999999 999999999999887 37999999999998742221 245
Q ss_pred HHHHHHHHHHHhcccCCC-CCCc---ccccC-cccccCCCCCCCCcEEEecCCCCc-Cc-ceeeeeeccCc
Q 002194 886 VLWETDRWLQKYCVSNTA-DRST---DLKVS-KDDESKGAPHLQNKTVAASGGGGT-EA-DFEHDGCHLAP 949 (954)
Q Consensus 886 ~~~~i~~fl~~~l~~~~~-~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~-~~-~~~~~~~~~~~ 949 (954)
....|++||...+.+... .... .++|. .+ ..........++++.+|.. .. |..|+++|--.
T Consensus 164 ~~~~i~~ff~g~~~~~~~~~~~~~~~~~~q~~~f---~~~~~~~~~~~yvP~~~~~~~~~~~l~v~lHGc~ 231 (318)
T 2d81_A 164 GAGAALKWIYGSLNARNTGTLSGSVLSFAQSGSY---GANGMDTTGYLYVPQSCASGATVCSLHVALHGCL 231 (318)
T ss_dssp HHHHHHHHHHSSCCCCCCSSCSSEEEEEECCGGG---CCTTBCSEEEEEECHHHHSSSSCEEEEEEECCTT
T ss_pred HHHHHHHHHhccCCCCccccccccccccccccCc---CCCCCCcceEEEecCCCCCCCCCCCEEEEecCCC
Confidence 677899999887654322 1211 13443 22 1223555667889988864 44 89999999654
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-14 Score=150.85 Aligned_cols=209 Identities=16% Similarity=0.123 Sum_probs=134.2
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (954)
..+|.+++...+ + + -|.||++||.+... ..| ...+..|+++||.|++ .+.+|
T Consensus 9 ~~~g~~l~y~~~---g-----~--~~pvvllHG~~~~~-----------~~~----~~~~~~L~~~g~~vi~---~D~~G 60 (279)
T 1hkh_A 9 NSTPIELYYEDQ---G-----S--GQPVVLIHGYPLDG-----------HSW----ERQTRELLAQGYRVIT---YDRRG 60 (279)
T ss_dssp TTEEEEEEEEEE---S-----S--SEEEEEECCTTCCG-----------GGG----HHHHHHHHHTTEEEEE---ECCTT
T ss_pred CCCCeEEEEEec---C-----C--CCcEEEEcCCCchh-----------hHH----hhhHHHHHhCCcEEEE---eCCCC
Confidence 346677765443 1 1 23488899964211 111 2355678889999999 66678
Q ss_pred CCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC-cccEEEEeccCCCCCCC---
Q 002194 726 EGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLT--- 799 (954)
Q Consensus 726 ~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~~~~~~--- 799 (954)
+|.+.... .......+|+.++++.+ +.+++.++||||||.+++.++.++|+ +++++|++++.......
T Consensus 61 ~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~ 134 (279)
T 1hkh_A 61 FGGSSKVNTGYDYDTFAADLHTVLETL------DLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDD 134 (279)
T ss_dssp STTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhc------CCCceEEEEeChhHHHHHHHHHHcCccceeeEEEEccCCcccccCcC
Confidence 88875432 23456678888887776 33589999999999999999999998 99999999874321100
Q ss_pred -CCCCcccc-----------c-hh--------hh---------cH---HHHH------------------hcCcccccCC
Q 002194 800 -PFGFQNED-----------R-TL--------WE---------AT---STYV------------------EMSPFMSANK 828 (954)
Q Consensus 800 -~~~~~~~~-----------~-~~--------~~---------~~---~~~~------------------~~sp~~~~~~ 828 (954)
........ . .. +. .. +.+. ..+....+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (279)
T 1hkh_A 135 NPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYNLDENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEA 214 (279)
T ss_dssp BTTSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHH
T ss_pred CcCCCcHHHHHHHHHHhhhhhhhhHHHHHhhhhhcccCCcccccHHHHHhhhhhhccCcHHHHHHHHHHHhhchhhhHHH
Confidence 00000000 0 00 00 00 0000 0111123455
Q ss_pred C---CCCEEEEEeCCCCCCCCchHHH-HHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 829 L---KKPILLVHGEEDNNSGTLTMQS-DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 829 ~---~~P~Lii~G~~D~~v~~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+ ++|+|++||++|..+| ++.+ +.+.+.+. +++++++++++|... .++.+.+.+.|.+||.
T Consensus 215 i~~~~~P~lii~G~~D~~~~--~~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 278 (279)
T 1hkh_A 215 VRAAGKPTLILHGTKDNILP--IDATARRFHQAVP----EADYVEVEGAPHGLL-WTHADEVNAALKTFLA 278 (279)
T ss_dssp HHHHCCCEEEEEETTCSSSC--TTTTHHHHHHHCT----TSEEEEETTCCTTHH-HHTHHHHHHHHHHHHH
T ss_pred hccCCCCEEEEEcCCCccCC--hHHHHHHHHHhCC----CeeEEEeCCCCccch-hcCHHHHHHHHHHHhh
Confidence 6 8999999999999998 7776 66666553 358899999999874 4567788888888885
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.8e-13 Score=150.53 Aligned_cols=266 Identities=15% Similarity=0.116 Sum_probs=166.3
Q ss_pred eceEEEEccCCCCCCceeeeecC-CCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGF-PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~-~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
..|+||++.+ ++..++..+ .+...+..++|||||++|+... ....|.++|+++++...........
T Consensus 125 ~tV~lWd~~t----g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs---------~Dg~v~iWd~~~~~~~~~~~~h~~~ 191 (420)
T 4gga_A 125 NSVYLWSASS----GDILQLLQMEQPGEYISSVAWIKEGNYLAVGT---------SSAEVQLWDVQQQKRLRNMTSHSAR 191 (420)
T ss_dssp TEEEEEETTT----CCEEEEEECCSTTCCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CEEEEEECCC----CCEEEEEEecCCCCcEEEEEECCCCCEEEEEE---------CCCeEEEEEcCCCcEEEEEeCCCCc
Confidence 4899999864 444433222 2334689999999999998854 2456777788887765443333322
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
+ ..++.|++.|+... ....++.++.
T Consensus 192 ----v--~~~s~~~~~l~sgs-------------------------------------------------~d~~i~~~d~ 216 (420)
T 4gga_A 192 ----V--GSLSWNSYILSSGS-------------------------------------------------RSGHIHHHDV 216 (420)
T ss_dssp ----E--EEEEEETTEEEEEE-------------------------------------------------TTSEEEEEET
T ss_pred ----e--EEEeeCCCEEEEEe-------------------------------------------------CCCceeEeee
Confidence 3 34455677777551 1123555565
Q ss_pred -CC--ceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEE--EeccCCCcccCCcccc
Q 002194 322 -DG--TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR--ELCDLPLAEDIPIAFN 395 (954)
Q Consensus 322 -~G--~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~--~l~~~~~~~~~p~~~~ 395 (954)
.. ....+... ..+....|+|+|+.++....++ .+.+|+...++.. .+.. ..
T Consensus 217 ~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~-------------~v~i~~~~~~~~~~~~~~~----------~~ 273 (420)
T 4gga_A 217 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN-------------LVNVWPSAPGEGGWVPLQT----------FT 273 (420)
T ss_dssp TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-------------CEEEEESSCCSSCSCCSEE----------EC
T ss_pred cccceeeEEecccccceeeeeecCCCCeeeeeeccc-------------cceEEeeccccccceeeee----------ec
Confidence 22 23333333 6677889999999999887443 7889998754311 1110 01
Q ss_pred ccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEe
Q 002194 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (954)
Q Consensus 396 ~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (954)
.....+..++|+|++..+++.... +..+.|.+|++ ..++..........+..+.|+|+++.|+.+..
T Consensus 274 ~~~~~V~~~~~~p~~~~~la~~~g----------s~D~~I~iwd~---~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 274 QHQGAVKAVAWCPWQSNVLATGGG----------TSDRHIRIWNV---CSGACLSAVDAHSQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEEC----------TTTCEEEEEET---TTTEEEEEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred ccCCceeeeeeCCCcccEEEEEee----------cCCCEEEEEeC---CccccceeeccccceeeeeecCCCCeEEEEEe
Confidence 122345678999999988765211 23457899996 44444333444556678899999999998865
Q ss_pred ccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEE
Q 002194 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLD 555 (954)
Q Consensus 476 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 555 (954)
... ..|.++|..++ ++......+...+.. ++|||||++|+.... ...|+
T Consensus 341 ~~d--~~I~iwd~~~~--~~v~~l~gH~~~V~~------l~~spdg~~l~S~s~---------------------D~tvr 389 (420)
T 4gga_A 341 FAQ--NQLVIWKYPTM--AKVAELKGHTSRVLS------LTMSPDGATVASAAA---------------------DETLR 389 (420)
T ss_dssp TTT--CCEEEEETTTC--CEEEEECCCSSCEEE------EEECTTSSCEEEEET---------------------TTEEE
T ss_pred cCC--CEEEEEECCCC--cEEEEEcCCCCCEEE------EEEcCCCCEEEEEec---------------------CCeEE
Confidence 333 23666666664 344444455555544 889999999887662 23489
Q ss_pred EEECCCCC
Q 002194 556 LFDINTGS 563 (954)
Q Consensus 556 ~~d~~~g~ 563 (954)
+||+.+..
T Consensus 390 iWdv~~~~ 397 (420)
T 4gga_A 390 LWRCFELD 397 (420)
T ss_dssp EECCSCSS
T ss_pred EEECCCCC
Confidence 99986543
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-14 Score=154.19 Aligned_cols=211 Identities=12% Similarity=0.123 Sum_probs=136.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCCCCCC
Q 002194 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGE 726 (954)
Q Consensus 648 ~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~ 726 (954)
+|.+++....- +.|.||++||.+.... .| ......|+. +||.|++ .+.+|+
T Consensus 9 ~g~~l~y~~~g----------~~~~vv~lhG~~~~~~-----------~~----~~~~~~l~~~~g~~v~~---~d~~G~ 60 (272)
T 3fsg_A 9 TRSNISYFSIG----------SGTPIIFLHGLSLDKQ-----------ST----CLFFEPLSNVGQYQRIY---LDLPGM 60 (272)
T ss_dssp CTTCCEEEEEC----------CSSEEEEECCTTCCHH-----------HH----HHHHTTSTTSTTSEEEE---ECCTTS
T ss_pred cCCeEEEEEcC----------CCCeEEEEeCCCCcHH-----------HH----HHHHHHHhccCceEEEE---ecCCCC
Confidence 66666654431 1467999999632110 01 112223444 6999999 666778
Q ss_pred CCcccch-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCC----
Q 002194 727 GDEEAND-RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF---- 801 (954)
Q Consensus 727 G~~~~~~-~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~---- 801 (954)
|.+.... .......+|+.++++.+. +.+++.++|||+||.+++.++.++|++++++|+++|.........
T Consensus 61 G~s~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 135 (272)
T 3fsg_A 61 GNSDPISPSTSDNVLETLIEAIEEII-----GARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGK 135 (272)
T ss_dssp TTCCCCSSCSHHHHHHHHHHHHHHHH-----TTCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHh-----CCCcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCcccccccc
Confidence 8775543 345666777777777642 336899999999999999999999999999999998753211000
Q ss_pred -------CCcc----cc------------chhhhcH-------------HHHHh--------cCcccccCCCCCCEEEEE
Q 002194 802 -------GFQN----ED------------RTLWEAT-------------STYVE--------MSPFMSANKLKKPILLVH 837 (954)
Q Consensus 802 -------~~~~----~~------------~~~~~~~-------------~~~~~--------~sp~~~~~~~~~P~Lii~ 837 (954)
.+.. .. ...+... ..+.. ..+...+.++++|+|+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~ 215 (272)
T 3fsg_A 136 HINILEEDINPVENKEYFADFLSMNVIINNQAWHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQFPFKIMV 215 (272)
T ss_dssp CCCEECSCCCCCTTGGGHHHHHHHCSEESHHHHHHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTCCCSSCEEEEE
T ss_pred chhhhhhhhhcccCHHHHHHHHHHhccCCCchhHHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhccCCCCEEEEE
Confidence 0000 00 0000000 00000 001113467899999999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
|++|..+| ++.+.++.+.+ .++++++++++||... .+....+.+.+.+||++..
T Consensus 216 g~~D~~~~--~~~~~~~~~~~----~~~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~~~~ 269 (272)
T 3fsg_A 216 GRNDQVVG--YQEQLKLINHN----ENGEIVLLNRTGHNLM-IDQREAVGFHFDLFLDELN 269 (272)
T ss_dssp ETTCTTTC--SHHHHHHHTTC----TTEEEEEESSCCSSHH-HHTHHHHHHHHHHHHHHHH
T ss_pred eCCCCcCC--HHHHHHHHHhc----CCCeEEEecCCCCCch-hcCHHHHHHHHHHHHHHhh
Confidence 99999998 88887776654 3479999999999874 4567788889999998764
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-14 Score=152.36 Aligned_cols=220 Identities=10% Similarity=0.055 Sum_probs=134.4
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEc
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (954)
.+...++..+| .+..+...+ +.|+||++||.+... ..| ......++++||.|++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~---------~~~~vv~lHG~~~~~-----------~~~----~~~~~~l~~~g~~v~~- 56 (279)
T 4g9e_A 3 INYHELETSHG-RIAVRESEG---------EGAPLLMIHGNSSSG-----------AIF----APQLEGEIGKKWRVIA- 56 (279)
T ss_dssp CEEEEEEETTE-EEEEEECCC---------CEEEEEEECCTTCCG-----------GGG----HHHHHSHHHHHEEEEE-
T ss_pred eEEEEEEcCCc-eEEEEecCC---------CCCeEEEECCCCCch-----------hHH----HHHHhHHHhcCCeEEe-
Confidence 44556665555 554433211 258899999964211 111 2345556788999999
Q ss_pred CCCCCCCCCCcccch-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 719 PTTPIIGEGDEEAND-----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 719 ~~~~~~G~G~~~~~~-----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
.+..|+|.+.... .......+|+.+.++.+ +.+++.++|||+||.+++.++.++|+ +.++|++++.
T Consensus 57 --~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~-~~~~vl~~~~ 127 (279)
T 4g9e_A 57 --PDLPGHGKSTDAIDPDRSYSMEGYADAMTEVMQQL------GIADAVVFGWSLGGHIGIEMIARYPE-MRGLMITGTP 127 (279)
T ss_dssp --ECCTTSTTSCCCSCHHHHSSHHHHHHHHHHHHHHH------TCCCCEEEEETHHHHHHHHHTTTCTT-CCEEEEESCC
T ss_pred --ecCCCCCCCCCCCCcccCCCHHHHHHHHHHHHHHh------CCCceEEEEECchHHHHHHHHhhCCc-ceeEEEecCC
Confidence 6667888775421 12344455555555544 33589999999999999999999998 6777766654
Q ss_pred CCCCCC-------CCCC--cccc-------------------chhh-hc------------HHHHH---hcCcccccCCC
Q 002194 794 YNRTLT-------PFGF--QNED-------------------RTLW-EA------------TSTYV---EMSPFMSANKL 829 (954)
Q Consensus 794 ~~~~~~-------~~~~--~~~~-------------------~~~~-~~------------~~~~~---~~sp~~~~~~~ 829 (954)
...... .... .... ...+ .. ...+. ..+....+.++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 207 (279)
T 4g9e_A 128 PVAREEVGQGFKSGPDMALAGQEIFSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAEA 207 (279)
T ss_dssp CCCGGGHHHHBCCSTTGGGGGCSCCCHHHHHHHHHHHHCSSCCHHHHHHHHHSCHHHHHHHHHHHHHTCBCCHHHHHHHC
T ss_pred CCCCCccchhhccchhhhhcCcccccHHHHHHHHHhhccCcccHHHHHHHHhhhccchHHHHHHhhccCCchHHHHHHhc
Confidence 221100 0000 0000 0000 00 00000 01222235667
Q ss_pred CCCEEEEEeCCCCCCCCchHHHHHHH-HHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhccc
Q 002194 830 KKPILLVHGEEDNNSGTLTMQSDRFF-NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~-~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (954)
++|+|+++|++|..+| .+.+.++. +.+ .++++++++++||... .+....+.+.+.+||++....
T Consensus 208 ~~P~l~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~~~~~ 272 (279)
T 4g9e_A 208 QLPIAVVNGRDEPFVE--LDFVSKVKFGNL----WEGKTHVIDNAGHAPF-REAPAEFDAYLARFIRDCTQL 272 (279)
T ss_dssp CSCEEEEEETTCSSBC--HHHHTTCCCSSB----GGGSCEEETTCCSCHH-HHSHHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEEcCCCcccc--hHHHHHHhhccC----CCCeEEEECCCCcchH-HhCHHHHHHHHHHHHHHhhhh
Confidence 8999999999999998 77766654 322 2357889999999863 566788899999999987643
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-12 Score=138.28 Aligned_cols=245 Identities=9% Similarity=0.039 Sum_probs=158.2
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+...+|||||++|+.... ...|.++|+++++........... +..+.|+|||+.|+...
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~---------dg~v~lWd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~s------ 74 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLY---------SGRVELWNYETQVEVRSIQVTETP----VRAGKFIARKNWIIVGS------ 74 (304)
T ss_dssp SCEEEEEECSSSSEEEEEET---------TSEEEEEETTTTEEEEEEECCSSC----EEEEEEEGGGTEEEEEE------
T ss_pred CceEEEEECCCCCEEEEEcC---------CCcEEEEECCCCceeEEeeccCCc----EEEEEEeCCCCEEEEEC------
Confidence 36889999999999988652 456777788887654433333222 66889999999998761
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-ccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~-~~~~~~~~SpDGk~ 345 (954)
....|.++|+ +|+. ..+... ..+..++|+|||++
T Consensus 75 -------------------------------------------~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 111 (304)
T 2ynn_A 75 -------------------------------------------DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY 111 (304)
T ss_dssp -------------------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE
T ss_pred -------------------------------------------CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCE
Confidence 1234677788 6643 344444 77889999999999
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCc-eEEE-eccCCCcccCCccccccccCccceeeccC-CCCceEEEEeccC
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSD-KPSTLYWAETQDG 422 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~-l~~~~~~~~~p~~~~~~~~g~~~~~wspD-g~~i~~~~~~~~~ 422 (954)
|+..+.+ +.+.+||++.+ .... +..+ ...+..++|+|+ ++.++..
T Consensus 112 l~sgs~D-------------~~v~lWd~~~~~~~~~~~~~h-------------~~~v~~v~~~p~~~~~l~sg------ 159 (304)
T 2ynn_A 112 VLSGSDD-------------LTVKLWNWENNWALEQTFEGH-------------EHFVMCVAFNPKDPSTFASG------ 159 (304)
T ss_dssp EEEEETT-------------SCEEEEEGGGTTEEEEEECCC-------------CSCEEEEEECTTCTTEEEEE------
T ss_pred EEEECCC-------------CeEEEEECCCCcchhhhhccc-------------CCcEEEEEECCCCCCEEEEE------
Confidence 9887743 38999999854 3322 2221 234567899995 5544433
Q ss_pred CCccccccCCCeEEEEecCCCCCCCceEEe-ecccccCceeecc--CCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002194 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCD--DSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 499 (954)
+..+.|.+|++ ..+.....+. .....+..+.|+| |++.|+..+.++ .|.++|+.++ +.....
T Consensus 160 -------s~D~~v~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~----~i~iWd~~~~--~~~~~~ 224 (304)
T 2ynn_A 160 -------CLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL----TIKIWDYQTK--SCVATL 224 (304)
T ss_dssp -------ETTSEEEEEET--TCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS----EEEEEETTTT--EEEEEE
T ss_pred -------eCCCeEEEEEC--CCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC----eEEEEeCCCC--ccceee
Confidence 33557899996 2333333443 2334556677776 677777765543 3555566654 333333
Q ss_pred cCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEec
Q 002194 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (954)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 569 (954)
..+...+.. +.|+|++++|+.... ...|.+||+.+++..+...
T Consensus 225 ~~h~~~v~~------~~~~p~~~~l~s~s~---------------------Dg~i~iWd~~~~~~~~~~~ 267 (304)
T 2ynn_A 225 EGHMSNVSF------AVFHPTLPIIISGSE---------------------DGTLKIWNSSTYKVEKTLN 267 (304)
T ss_dssp ECCSSCEEE------EEECSSSSEEEEEET---------------------TSCEEEEETTTCCEEEEEC
T ss_pred CCCCCCEEE------EEECCCCCEEEEEcC---------------------CCeEEEEECCCCceeeecc
Confidence 444443333 789999998887662 2249999999988765544
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-12 Score=148.31 Aligned_cols=276 Identities=11% Similarity=0.084 Sum_probs=174.9
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+....|+|||+.|+.... ...|.++|.++++........... +..++|+|||+.|+...
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~---------Dg~i~vwd~~~~~~~~~l~~h~~~----V~~v~~~~~~~~l~sgs------ 169 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASE---------DATIKVWDYETGDFERTLKGHTDS----VQDISFDHSGKLLASCS------ 169 (410)
T ss_dssp SCEEEEEECSSSSEEEEEES---------SSCEEEEETTTCCCCEEECCCSSC----EEEEEECTTSSEEEEEE------
T ss_pred CcEEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCcEEEEEeccCCc----EEEEEEcCCCCEEEEEe------
Confidence 46888999999998887552 457778888887765444333322 67899999999888762
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-ccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~-~~~~~~~~SpDGk~ 345 (954)
. ...|.++|+ +++. +.+... ..+..++|+|||++
T Consensus 170 ---------------~----------------------------D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 206 (410)
T 1vyh_C 170 ---------------A----------------------------DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 206 (410)
T ss_dssp ---------------T----------------------------TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSE
T ss_pred ---------------C----------------------------CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCE
Confidence 1 123445676 5543 333333 67889999999999
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
|+..+.+ +.+.+||+..+. .+.+..+. ..+..+.|+|||+.++..
T Consensus 207 l~s~s~D-------------~~i~~wd~~~~~~~~~~~~h~-------------~~v~~~~~~~~g~~l~s~-------- 252 (410)
T 1vyh_C 207 IVSASRD-------------KTIKMWEVQTGYCVKTFTGHR-------------EWVRMVRPNQDGTLIASC-------- 252 (410)
T ss_dssp EEEEETT-------------SEEEEEETTTCCEEEEEECCS-------------SCEEEEEECTTSSEEEEE--------
T ss_pred EEEEeCC-------------CeEEEEECCCCcEEEEEeCCC-------------ccEEEEEECCCCCEEEEE--------
Confidence 9887743 389999998554 34443321 345678999999866554
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccC--------------------CceEEEEEeccccceEEE
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD--------------------SLALVYESWYKTRRTRTW 484 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spD--------------------g~~l~~~~~~~~~~~~l~ 484 (954)
+..+.|.+|++ ..+.....+..+...+..++|+|+ |..|+..+.++ .|.
T Consensus 253 -----s~D~~v~vwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~----~i~ 321 (410)
T 1vyh_C 253 -----SNDQTVRVWVV--ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK----TIK 321 (410)
T ss_dssp -----ETTSCEEEEET--TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS----EEE
T ss_pred -----cCCCeEEEEEC--CCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC----eEE
Confidence 33557888986 233333445566667788999997 44566554433 366
Q ss_pred EEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCe
Q 002194 485 VISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSK 564 (954)
Q Consensus 485 ~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 564 (954)
++|+.++ ........+...+.. +.|+|+|++|+.... ...|++||+.+++.
T Consensus 322 iwd~~~~--~~~~~~~~h~~~v~~------v~~~~~g~~l~s~s~---------------------D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 322 MWDVSTG--MCLMTLVGHDNWVRG------VLFHSGGKFILSCAD---------------------DKTLRVWDYKNKRC 372 (410)
T ss_dssp EEETTTT--EEEEEEECCSSCEEE------EEECSSSSCEEEEET---------------------TTEEEEECCTTSCC
T ss_pred EEECCCC--ceEEEEECCCCcEEE------EEEcCCCCEEEEEeC---------------------CCeEEEEECCCCce
Confidence 6676664 223333333333333 789999999887652 23599999988765
Q ss_pred EEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEE
Q 002194 565 ERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQS 615 (954)
Q Consensus 565 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~ 615 (954)
......... .+.. .+|+|++..++.... -..+.+|+
T Consensus 373 ~~~~~~h~~----~v~~-------l~~~~~~~~l~sgs~----D~~i~vW~ 408 (410)
T 1vyh_C 373 MKTLNAHEH----FVTS-------LDFHKTAPYVVTGSV----DQTVKVWE 408 (410)
T ss_dssp CEEEECCSS----CEEE-------EEECSSSSCEEEEET----TSEEEEEC
T ss_pred EEEEcCCCC----cEEE-------EEEcCCCCEEEEEeC----CCcEEEEe
Confidence 433322211 1222 468888886653322 23466655
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-14 Score=158.39 Aligned_cols=71 Identities=10% Similarity=0.116 Sum_probs=60.5
Q ss_pred ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC-CCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF-ESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
.+.++++|+|+++|++|..+| +..++++++.++..+.+++++++++ +||... .+..+.+.+.|.+||++++
T Consensus 302 ~l~~i~~Pvlii~G~~D~~~~--~~~~~~~~~~~~~~g~~~~~~~i~~~~gH~~~-~e~p~~~~~~i~~fl~~~~ 373 (377)
T 3i1i_A 302 ALSNVEANVLMIPCKQDLLQP--SRYNYKMVDLLQKQGKYAEVYEIESINGHMAG-VFDIHLFEKKVYEFLNRKV 373 (377)
T ss_dssp HHHTCCSEEEEECBTTCSSSC--THHHHHHHHHHHHTTCCEEECCBCCTTGGGHH-HHCGGGTHHHHHHHHHSCC
T ss_pred HHhhCCCCEEEEecCCccccC--HHHHHHHHHHHHhcCCCceEEEcCCCCCCcch-hcCHHHHHHHHHHHHHhhh
Confidence 456789999999999999998 8999999999988777799999998 999763 3455678888999998765
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.2e-13 Score=150.97 Aligned_cols=192 Identities=11% Similarity=0.038 Sum_probs=124.3
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECC--CCceeeccc---CCCccccccccceeEecCCeEEEEEecC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD--TGKARPLFQ---SPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~--~g~~~~lt~---~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (954)
.+..++|||||++|+++.. . ...|.++++. +++..+... .+.. +..++|+|||+.|++..
T Consensus 104 ~v~~~~~s~d~~~l~~~~~------~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~-----v~~~~~sp~~~~l~~~~-- 168 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACAD------S--DKSLLVFDVDKTSKNVLKLRKRFCFSKR-----PNAISIAEDDTTVIIAD-- 168 (450)
T ss_dssp CEEEEEECTTSSEEEEEEG------G--GTEEEEEEECSSSSSCEEEEEEEECSSC-----EEEEEECTTSSEEEEEE--
T ss_pred ceEEEEEcCCCCEEEEEEC------C--CCeEEEEECcCCCCceeeeeecccCCCC-----ceEEEEcCCCCEEEEEe--
Confidence 4788999999999866542 2 2345555555 665544432 1221 66899999999998761
Q ss_pred CCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee-----EcCCC-cccccc
Q 002194 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-----EIGPP-AVYTSL 337 (954)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-----~l~~~-~~~~~~ 337 (954)
....++.+++ ++... .+... ..+..+
T Consensus 169 -----------------------------------------------~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 201 (450)
T 2vdu_B 169 -----------------------------------------------KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDV 201 (450)
T ss_dssp -----------------------------------------------TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEE
T ss_pred -----------------------------------------------CCCcEEEEecCCcccccccceeeecccCceEEE
Confidence 1245788888 65433 22222 667889
Q ss_pred ccCCC---CcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002194 338 DPSPD---EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (954)
Q Consensus 338 ~~SpD---Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i 413 (954)
+|+|| |++|+..+.+ +.|.+||+..+. ...+.. +....+..++|+ ||+.+
T Consensus 202 ~~sp~~~~~~~l~s~~~d-------------~~i~vwd~~~~~~~~~~~~------------~h~~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 202 HLIKDSDGHQFIITSDRD-------------EHIKISHYPQCFIVDKWLF------------GHKHFVSSICCG-KDYLL 255 (450)
T ss_dssp EEEECTTSCEEEEEEETT-------------SCEEEEEESCTTCEEEECC------------CCSSCEEEEEEC-STTEE
T ss_pred EEcCCCCCCcEEEEEcCC-------------CcEEEEECCCCceeeeeec------------CCCCceEEEEEC-CCCEE
Confidence 99999 9888887743 389999998554 333221 112345789999 99876
Q ss_pred eEEEEeccCCCccccccCCCeEEEEecCCCCCCC-ceEEee-------------------------cccccCceeeccCC
Q 002194 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHK-------------------------LDLRYGGISWCDDS 467 (954)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~-------------------------~~~~~~~~~~spDg 467 (954)
+.. +..+.|.+|++ ..++ ...+.. ....+..+.|+|||
T Consensus 256 ~s~-------------~~d~~v~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 319 (450)
T 2vdu_B 256 LSA-------------GGDDKIFAWDW---KTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL 319 (450)
T ss_dssp EEE-------------ESSSEEEEEET---TTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred EEE-------------eCCCeEEEEEC---CCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence 655 34568999996 4444 333321 12345678999999
Q ss_pred ceEEEEEeccccceEEEEE
Q 002194 468 LALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~ 486 (954)
+.|+.....++ ...||.+
T Consensus 320 ~~l~~~~~~d~-~i~iw~~ 337 (450)
T 2vdu_B 320 PFVAFFVEATK-CIIILEM 337 (450)
T ss_dssp SEEEEEETTCS-EEEEEEE
T ss_pred CEEEEEECCCC-eEEEEEe
Confidence 99988874443 3667766
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.2e-14 Score=140.42 Aligned_cols=183 Identities=9% Similarity=-0.099 Sum_probs=114.7
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHC-CcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (954)
.|+||++||+..... ....+.......|+++ ||.|+.++.+ |++.. ++...++
T Consensus 4 ~p~vv~lHG~~~~~~-----------~~~~~~~~~~~~l~~~~g~~vi~~d~~---g~~~~------------~~~~~~~ 57 (194)
T 2qs9_A 4 PSKAVIVPGNGGGDV-----------TTHGWYGWVKKELEKIPGFQCLAKNMP---DPITA------------RESIWLP 57 (194)
T ss_dssp CCEEEEECCSSSSCT-----------TTSTTHHHHHHHHTTSTTCCEEECCCS---STTTC------------CHHHHHH
T ss_pred CCEEEEECCCCCCCc-----------ccchHHHHHHHHHhhccCceEEEeeCC---CCCcc------------cHHHHHH
Confidence 689999999642100 0011111245566666 9999995554 43211 1122333
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCC
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK 828 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~ 828 (954)
.+.+.-.+ .+++.++||||||.+++.++.++| ++++|+++|........ .......+. .......+.+
T Consensus 58 ~~~~~l~~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~~~---~~~~~~~~~------~~~~~~~~~~ 125 (194)
T 2qs9_A 58 FMETELHC-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLGDE---NERASGYFT------RPWQWEKIKA 125 (194)
T ss_dssp HHHHTSCC-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTTCH---HHHHTSTTS------SCCCHHHHHH
T ss_pred HHHHHhCc-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccchh---hhHHHhhhc------ccccHHHHHh
Confidence 34443222 378999999999999999999997 99999999865421100 000000000 0011122233
Q ss_pred CCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 829 LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 829 ~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
+..|+|++||++|..+| ++.++++.+.+ . .++.++++++|.+. .+.. +.+..+++||++...
T Consensus 126 ~~~p~lii~G~~D~~vp--~~~~~~~~~~~-~----~~~~~~~~~gH~~~-~~~p-~~~~~~~~fl~~~~~ 187 (194)
T 2qs9_A 126 NCPYIVQFGSTDDPFLP--WKEQQEVADRL-E----TKLHKFTDCGHFQN-TEFH-ELITVVKSLLKVPAL 187 (194)
T ss_dssp HCSEEEEEEETTCSSSC--HHHHHHHHHHH-T----CEEEEESSCTTSCS-SCCH-HHHHHHHHHHTCCCC
T ss_pred hCCCEEEEEeCCCCcCC--HHHHHHHHHhc-C----CeEEEeCCCCCccc-hhCH-HHHHHHHHHHHhhhh
Confidence 46799999999999999 99999998888 3 48899999999875 3443 445666799887543
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.1e-14 Score=158.31 Aligned_cols=151 Identities=19% Similarity=0.265 Sum_probs=92.2
Q ss_pred CceEEEEEEcCC--C--eEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC
Q 002194 637 LQKELIKYQRKD--G--VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG 712 (954)
Q Consensus 637 ~~~~~~~~~~~~--g--~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G 712 (954)
+...++.|.+.+ | ..+.++++.|.+..+ .++.|+||++||+.............. .......+..|+++|
T Consensus 44 v~~~~i~y~t~~~~g~~~~~~g~l~~P~~~~~--~~~~P~vv~~HG~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~G 117 (397)
T 3h2g_A 44 VRVAEFTYATIGVEGEPATASGVLLIPGGERC--SGPYPLLGWGHPTEALRAQEQAKEIRD----AKGDDPLVTRLASQG 117 (397)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEEECTTC--CSCEEEEEEECCCCCBTTCCHHHHHHH----TTTCSHHHHTTGGGT
T ss_pred eEEEEEEEEecCCCCCeEEEEEEEEeCCCCCC--CCCCcEEEEeCCCcCCCCccccccccc----ccchHHHHHHHHHCC
Confidence 445667776554 4 468999999987533 245899999999753221100000000 001224567788999
Q ss_pred cEEEEcCCCCCCCCCCcccc-hh-----hHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHh-CC---
Q 002194 713 FAILGGPTTPIIGEGDEEAN-DR-----FVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAH-AP--- 781 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~-~~-----~~~~~~~D~~~av~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~-~p--- 781 (954)
|.|+++++ +|+|.+... .. .....+.|...++..+.++ +..|+++|+++||||||.++++++.. .+
T Consensus 118 ~~V~~~D~---~G~G~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~ 194 (397)
T 3h2g_A 118 YVVVGSDY---LGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLS 194 (397)
T ss_dssp CEEEEECC---TTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCT
T ss_pred CEEEEecC---CCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcC
Confidence 99999555 566654211 11 1123455566666655554 54567899999999999999888732 22
Q ss_pred --CcccEEEEeccCCCC
Q 002194 782 --HLFCCGIARSGAYNR 796 (954)
Q Consensus 782 --~~~~a~v~~~~~~~~ 796 (954)
-.+.++++.++.++.
T Consensus 195 ~~~~~~~~~~~~~~~~l 211 (397)
T 3h2g_A 195 KEFHLVASAPISGPYAL 211 (397)
T ss_dssp TTSEEEEEEEESCCSSH
T ss_pred cCcceEEEecccccccH
Confidence 157788887776553
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.54 E-value=9e-13 Score=146.16 Aligned_cols=263 Identities=10% Similarity=0.021 Sum_probs=150.2
Q ss_pred cCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCC
Q 002194 107 DAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP 186 (954)
Q Consensus 107 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~ 186 (954)
....+..++|||||++|+++..+ . ... ..|.+|++..++ +..+.+....
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~----------------------~-~~~------~~v~~~~~~~~~--g~~~~~~~~~ 96 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEF----------------------S-KDQ------AAVSAFAFDKEK--GTLHLLNTQK 96 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECC----------------------S-STT------CEEEEEEEETTT--TEEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEcc----------------------C-CCC------CcEEEEEEeCCC--CcEEEeeEec
Confidence 34467789999999999888762 0 000 267777775432 3444443322
Q ss_pred -CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC-Cceeeccc---CCCcc------ccccccceeEecCC
Q 002194 187 -DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPLFQ---SPDIY------LNAIFDNFVWVNNS 255 (954)
Q Consensus 187 -~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~---~~~~~------~~~~~~~~~wspDG 255 (954)
.+......++ ||++|+++.. ....|.+++++. +....+.. ..... ....+..++|+|||
T Consensus 97 ~~~~~p~~~~~--dg~~l~~~~~--------~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg 166 (361)
T 3scy_A 97 TMGADPCYLTT--NGKNIVTANY--------SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG 166 (361)
T ss_dssp CSSSCEEEEEE--CSSEEEEEET--------TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred cCCCCcEEEEE--CCCEEEEEEC--------CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence 2223444555 8998877542 234566666653 33322211 11100 00012458999999
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe---CC----c-e--
Q 002194 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DG----T-V-- 325 (954)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~---~G----~-~-- 325 (954)
++|+++.. +...|+++++ ++ + .
T Consensus 167 ~~l~~~~~------------------------------------------------~~~~v~v~~~~~~~~~~~~~~l~~ 198 (361)
T 3scy_A 167 KYLLADDL------------------------------------------------GTDQIHKFNINPNANADNKEKFLT 198 (361)
T ss_dssp SEEEEEET------------------------------------------------TTTEEEEEEECTTCCTTTCCCCEE
T ss_pred CEEEEEeC------------------------------------------------CCCEEEEEEEcCCCCcccccceee
Confidence 98887610 1223555554 22 2 1
Q ss_pred -----e-EcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCcccccccc
Q 002194 326 -----K-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (954)
Q Consensus 326 -----~-~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~ 399 (954)
. .+........++|||||++|++.... .+.+.+|+++++..+.+....... ....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~------------~~~v~v~~~~~g~~~~~~~~~~~~-------~~~~ 259 (361)
T 3scy_A 199 KGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI------------GGTVIAFRYADGMLDEIQTVAADT-------VNAQ 259 (361)
T ss_dssp EEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------------TCEEEEEEEETTEEEEEEEEESCS-------SCCC
T ss_pred cccccceecCCCCCCeEEEEcCCCCEEEEEcCC------------CCeEEEEEecCCceEEeEEEecCC-------CCCC
Confidence 1 12222456688999999998887632 237999999877655443321110 0012
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccC-CCeEEEEecCCCCCCCceEEee--cccccCceeeccCCceEEEEEec
Q 002194 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTP-RDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCDDSLALVYESWY 476 (954)
Q Consensus 400 g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~g~~~~~l~~--~~~~~~~~~~spDg~~l~~~~~~ 476 (954)
+...++|||||+.|++. . .. .+.|.+|++++ .+++.+.+.. ....+..++|||||++|+++...
T Consensus 260 ~~~~i~~spdg~~l~v~-~-----------~~~~~~i~v~~~~~-~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~ 326 (361)
T 3scy_A 260 GSGDIHLSPDGKYLYAS-N-----------RLKADGVAIFKVDE-TNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRD 326 (361)
T ss_dssp CEEEEEECTTSSEEEEE-E-----------CSSSCEEEEEEECT-TTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred CcccEEECCCCCEEEEE-C-----------CCCCCEEEEEEEcC-CCCcEEEeeEecCCCCCceEEECCCCCEEEEEECC
Confidence 34579999999976554 1 11 34677777522 2344444422 23356779999999999887644
Q ss_pred cccceEEEEEcCCCC
Q 002194 477 KTRRTRTWVISPGSK 491 (954)
Q Consensus 477 ~~~~~~l~~~d~~~~ 491 (954)
.+ ...+|.+|..++
T Consensus 327 ~~-~v~v~~~d~~~g 340 (361)
T 3scy_A 327 TN-VIQIFERDQATG 340 (361)
T ss_dssp TT-EEEEEEECTTTC
T ss_pred CC-CEEEEEEECCCC
Confidence 43 477888998775
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-12 Score=141.01 Aligned_cols=300 Identities=9% Similarity=0.046 Sum_probs=181.0
Q ss_pred CcccceeecCCC-CeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEec-CCeEEEEEecCCC
Q 002194 189 AKLNFVTWSQDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN-NSTLLVCTIPLLR 266 (954)
Q Consensus 189 ~~~~~~~wSPDG-~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp-DG~~l~~~~~~~~ 266 (954)
..+..+.|+||| +.|+.... ...|.++++.+++......... ....+..+.|+| |++.|+...
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~---- 138 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSK---------GGDIILWDYDVQNKTSFIQGMG--PGDAITGMKFNQFNTNQLFVSS---- 138 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEB---------TSCEEEEETTSTTCEEEECCCS--TTCBEEEEEEETTEEEEEEEEE----
T ss_pred CCEEEEEECCCCCCEEEEEcC---------CCeEEEEeCCCcccceeeecCC--cCCceeEEEeCCCCCCEEEEEe----
Confidence 468889999999 77776542 4567788888776655443211 112277899999 677777651
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC----ccccccccCC
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----AVYTSLDPSP 341 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~----~~~~~~~~Sp 341 (954)
....|.++++ ++....+... ..+..++|+|
T Consensus 139 ---------------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 173 (383)
T 3ei3_B 139 ---------------------------------------------IRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV 173 (383)
T ss_dssp ---------------------------------------------TTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEET
T ss_pred ---------------------------------------------CCCEEEEEECCCCceEEEeccCCCCCCeEEEEECC
Confidence 1234667777 4444444322 4577899999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
||+.|+..+.+ +.+.+||+++.....+..+. ..+..++|+||++.+++..
T Consensus 174 ~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~~l~s~---- 223 (383)
T 3ei3_B 174 SRQMLATGDST-------------GRLLLLGLDGHEIFKEKLHK-------------AKVTHAEFNPRCDWLMATS---- 223 (383)
T ss_dssp TTTEEEEEETT-------------SEEEEEETTSCEEEEEECSS-------------SCEEEEEECSSCTTEEEEE----
T ss_pred CCCEEEEECCC-------------CCEEEEECCCCEEEEeccCC-------------CcEEEEEECCCCCCEEEEE----
Confidence 99999888743 38999999877666655432 3457899999999544441
Q ss_pred CCCccccccCCCeEEEEecCCCCC-CCceEEeecccccCceeecc-CCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQG-EGPEILHKLDLRYGGISWCD-DSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g-~~~~~l~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 499 (954)
+..+.|.+|++..... +.......+...+..++|+| ||+.|+..+.++ .|.++|+.++. ....+.
T Consensus 224 --------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~----~i~iwd~~~~~-~~~~~~ 290 (383)
T 3ei3_B 224 --------SVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRN----EIRVYSSYDWS-KPDQII 290 (383)
T ss_dssp --------ETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSS----EEEEEETTBTT-SCSEEE
T ss_pred --------eCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCC----cEEEEECCCCc-cccccc
Confidence 2345788998611110 23333345667788899999 999998776543 46666666652 222222
Q ss_pred cCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCccccccee
Q 002194 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (954)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 579 (954)
... ...+.........|+|++..++...... +.+ .+ +....|++||+.+++.......... ...
T Consensus 291 ~~~-~~~~~~~~~~~~~~~p~~~~~~~~~s~d----g~~--s~------s~d~~i~iwd~~~~~~~~~l~~~~~---~~~ 354 (383)
T 3ei3_B 291 IHP-HRQFQHLTPIKATWHPMYDLIVAGRYPD----DQL--LL------NDKRTIDIYDANSGGLVHQLRDPNA---AGI 354 (383)
T ss_dssp ECC-BCCCTTSCCCCCEECSSSSEEEEECBCC----TTT--CT------TCCCCEEEEETTTCCEEEEECBTTB---CSC
T ss_pred ccc-ccccccccceEEeccCCCCceEEEecCC----ccc--cc------CCCCeEEEEecCCCceeeeecCCCC---Cce
Confidence 111 1111111111256888888776554221 111 11 1244699999998887554443211 000
Q ss_pred EEeccCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002194 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (954)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~ 618 (954)
. ...+|+||++.|+.. + -..+.+|++.+
T Consensus 355 ~------~~~~~s~~g~~l~s~-s----d~~i~iw~~~~ 382 (383)
T 3ei3_B 355 I------SLNKFSPTGDVLASG-M----GFNILIWNRED 382 (383)
T ss_dssp C------CEEEECTTSSEEEEE-E----TTEEEEEECC-
T ss_pred E------EEEEEecCccEEEEe-c----CCcEEEEecCC
Confidence 1 113689999877554 3 25688888653
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-14 Score=150.28 Aligned_cols=215 Identities=16% Similarity=0.114 Sum_probs=133.5
Q ss_pred EcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCC
Q 002194 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (954)
Q Consensus 645 ~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~ 724 (954)
...+|.+++....-++ + .|+||++||...... ....+. .....|+ ++|.|++ .+.+
T Consensus 12 ~~~~g~~l~y~~~g~~-----g---~p~vvllHG~~~~~~-----------~~~~~~-~~~~~L~-~~~~vi~---~D~~ 67 (285)
T 1c4x_A 12 FPSGTLASHALVAGDP-----Q---SPAVVLLHGAGPGAH-----------AASNWR-PIIPDLA-ENFFVVA---PDLI 67 (285)
T ss_dssp ECCTTSCEEEEEESCT-----T---SCEEEEECCCSTTCC-----------HHHHHG-GGHHHHH-TTSEEEE---ECCT
T ss_pred EEECCEEEEEEecCCC-----C---CCEEEEEeCCCCCCc-----------chhhHH-HHHHHHh-hCcEEEE---ecCC
Confidence 3457777776554211 1 477999999521000 000111 1233444 4599999 6667
Q ss_pred CCCCcccch---hhHHHH----HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC
Q 002194 725 GEGDEEAND---RFVEQL----VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (954)
Q Consensus 725 G~G~~~~~~---~~~~~~----~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~ 797 (954)
|+|.+.... ...... .+|+.+.++.+ +.+++.|+||||||.+++.++.++|++++++|++++.....
T Consensus 68 G~G~S~~~~~~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~ 141 (285)
T 1c4x_A 68 GFGQSEYPETYPGHIMSWVGMRVEQILGLMNHF------GIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPM 141 (285)
T ss_dssp TSTTSCCCSSCCSSHHHHHHHHHHHHHHHHHHH------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCC
T ss_pred CCCCCCCCCCcccchhhhhhhHHHHHHHHHHHh------CCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCCC
Confidence 888775432 223444 66666665554 23589999999999999999999999999999998754211
Q ss_pred CC--C-----CC------------------Cccccc----h----hhh---cHHHHH---h------------cCccccc
Q 002194 798 LT--P-----FG------------------FQNEDR----T----LWE---ATSTYV---E------------MSPFMSA 826 (954)
Q Consensus 798 ~~--~-----~~------------------~~~~~~----~----~~~---~~~~~~---~------------~sp~~~~ 826 (954)
.. . +. +..... . .+. .+..+. . ......+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 221 (285)
T 1c4x_A 142 NARPPELARLLAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATL 221 (285)
T ss_dssp SSCCHHHHHHHTGGGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHH
T ss_pred CccchhHHHHHHHhccccHHHHHHHHHHhhcCcccccCcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhhh
Confidence 00 0 00 000000 0 000 000000 0 0112345
Q ss_pred CCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.++++|+|+++|++|..+| +..++++.+.+. +.++++++++||... .+....+.+.+.+||.+
T Consensus 222 ~~i~~P~lii~G~~D~~~p--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 284 (285)
T 1c4x_A 222 GRLPHDVLVFHGRQDRIVP--LDTSLYLTKHLK----HAELVVLDRCGHWAQ-LERWDAMGPMLMEHFRA 284 (285)
T ss_dssp TTCCSCEEEEEETTCSSSC--THHHHHHHHHCS----SEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHC
T ss_pred ccCCCCEEEEEeCCCeeeC--HHHHHHHHHhCC----CceEEEeCCCCcchh-hcCHHHHHHHHHHHHhc
Confidence 7789999999999999998 888887776553 469999999999864 45667888888888863
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-12 Score=142.03 Aligned_cols=297 Identities=9% Similarity=0.044 Sum_probs=173.2
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+....|||||++|+..+. ...|.++|+.+++........... +..++|+|||+.|+...
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~---------D~~v~iWd~~~~~~~~~~~~h~~~----v~~~~~s~~g~~las~~------ 127 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQ---------DGRLIVWNALTSQKTHAIKLHCPW----VMECAFAPNGQSVACGG------ 127 (380)
T ss_dssp SCEEEEEECTTSSCEEEEET---------TSEEEEEETTTTEEEEEEECCCTT----CCCCEECTTSSEEEECC------
T ss_pred cEEEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCccceEEecCCCC----EEEEEECCCCCEEEEee------
Confidence 46889999999999988652 557788898887655443333322 67899999999988651
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC--------ceeEcCCC-ccccccc
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--------TVKEIGPP-AVYTSLD 338 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G--------~~~~l~~~-~~~~~~~ 338 (954)
.+ + .+.++++ ++ ..+.+... +.+....
T Consensus 128 ---------------~d--------------------------~--~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~ 164 (380)
T 3iz6_a 128 ---------------LD--------------------------S--ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ 164 (380)
T ss_dssp ---------------SS--------------------------S--CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCB
T ss_pred ---------------CC--------------------------C--cEEEEECCCCccccCCccceeeccCCCcceEEEE
Confidence 11 1 1233343 21 11223333 6677889
Q ss_pred cCCCCcE-EEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeecc-CCCCceEE
Q 002194 339 PSPDEKY-ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS-DKPSTLYW 416 (954)
Q Consensus 339 ~SpDGk~-l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wsp-Dg~~i~~~ 416 (954)
|+|++.. |+..+. ++.+.+||+.+++.......... .+....+..+.|++ |++.++..
T Consensus 165 ~~~~~~~~l~s~s~-------------D~~i~~wd~~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~l~sg 224 (380)
T 3iz6_a 165 YVPDQETRLITGSG-------------DQTCVLWDVTTGQRISIFGSEFP-------SGHTADVLSLSINSLNANMFISG 224 (380)
T ss_dssp CCSSSSSCEEEECT-------------TSCEEEECTTTCCEEEEECCCSS-------SSCCSCEEEEEECSSSCCEEEEE
T ss_pred EecCCCCEEEEECC-------------CCcEEEEEcCCCcEEEEeecccC-------CCCccCeEEEEeecCCCCEEEEE
Confidence 9998654 555442 23899999986654332211100 01223456678876 66544433
Q ss_pred EEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcE
Q 002194 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (954)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (954)
+..+.|.+|++ ...+...+.+..+...+..++|+|||+.|+..+.++. |.++|+.++ ...
T Consensus 225 -------------s~D~~v~~wd~-~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~----i~lwd~~~~--~~~ 284 (380)
T 3iz6_a 225 -------------SCDTTVRLWDL-RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT----CRLFDMRTG--HQL 284 (380)
T ss_dssp -------------ETTSCEEEEET-TTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC----EEEEETTTT--EEE
T ss_pred -------------ECCCeEEEEEC-CCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe----EEEEECCCC--cEE
Confidence 33557889996 1122344566677888999999999999888765543 445555554 223
Q ss_pred EEecCCCCCcc-CCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccc
Q 002194 497 ILFDRSSEDVY-SDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKY 575 (954)
Q Consensus 497 ~l~~~~~~~~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 575 (954)
........... ..+....++|+|+|++++.... ...|++||+.+++.......-..
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---------------------dg~i~vwd~~~~~~~~~~~~~~~-- 341 (380)
T 3iz6_a 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS---------------------NGDCYVWDTLLAEMVLNLGTLQN-- 341 (380)
T ss_dssp EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT---------------------TSCEEEEETTTCCEEEEECCSCS--
T ss_pred EEecccccccccccCceEEEEECCCCCEEEEEEC---------------------CCCEEEEECCCCceEEEEecccC--
Confidence 33222111000 0000112789999998887651 23499999988775433211100
Q ss_pred cceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002194 576 YETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (954)
Q Consensus 576 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g 619 (954)
.+.. .-...+|||||+.|+.... -..+.+|++.+.
T Consensus 342 --~h~~---~v~~l~~s~dg~~l~sgs~----D~~i~iW~~~~~ 376 (380)
T 3iz6_a 342 --SHEG---RISCLGLSSDGSALCTGSW----DKNLKIWAFSGH 376 (380)
T ss_dssp --SCCC---CCCEEEECSSSSEEEEECT----TSCEEEEECCSS
T ss_pred --CCCC---ceEEEEECCCCCEEEEeeC----CCCEEEEecCCC
Confidence 0000 0112579999987653222 345888887654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-12 Score=142.04 Aligned_cols=254 Identities=15% Similarity=0.105 Sum_probs=156.7
Q ss_pred eceEEEEccCCCCCCceee-eecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIE-IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~-lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
..|+||++.+ ++..+ +....+...+..++|+|||+.|+... ....|.++++++++..+.......
T Consensus 45 ~tV~iWd~~t----g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs---------~Dg~v~iw~~~~~~~~~~~~~h~~- 110 (318)
T 4ggc_A 45 NSVYLWSASS----GDILQLLQMEQPGEYISSVAWIKEGNYLAVGT---------SSAEVQLWDVQQQKRLRNMTSHSA- 110 (318)
T ss_dssp TEEEEEETTT----CCEEEEEECCSTTCCEEEEEECTTSSEEEEEE---------TTSEEEEEETTTTEEEEEEECCSS-
T ss_pred CEEEEEECCC----CCEEEEEEecCCCCeEEEEEECCCCCEEEEEE---------CCCcEEEeecCCceeEEEecCccc-
Confidence 4799999864 44333 33222334688999999999998754 245788889888876554433332
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
....++++++.++... ....+...+.
T Consensus 111 -----~~~~~~~~~~~l~s~~-------------------------------------------------~~~~~~~~~~ 136 (318)
T 4ggc_A 111 -----RVGSLSWNSYILSSGS-------------------------------------------------RSGHIHHHDV 136 (318)
T ss_dssp -----CEEEEEEETTEEEEEE-------------------------------------------------TTSEEEEEET
T ss_pred -----eEEEeecCCCEEEEEe-------------------------------------------------cCCceEeeec
Confidence 2445777888777551 1112333343
Q ss_pred -CC--ceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCcccccc
Q 002194 322 -DG--TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV 397 (954)
Q Consensus 322 -~G--~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~ 397 (954)
.+ ....+... ..+....++++|+.|+..+.+ +.+.+||+..++....... .....
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~--------~~~~~ 195 (318)
T 4ggc_A 137 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-------------NLVNVWPSAPGEGGWVPLQ--------TFTQH 195 (318)
T ss_dssp TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEESSCBTTBSCCSE--------EECCC
T ss_pred CCCceeEEEEcCccCceEEEEEcCCCCEEEEEecC-------------cceeEEECCCCccccccee--------eeccc
Confidence 22 22223333 566778899999999887743 3899999885431110000 00011
Q ss_pred ccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEecc
Q 002194 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 398 ~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
...+..+.|+|++..+++.... +....|.+|+. ..............+....|+|+++.++.++...
T Consensus 196 ~~~v~~~~~~~~~~~~~~~~~~----------~~~~~i~lwd~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~ 262 (318)
T 4ggc_A 196 QGAVKAVAWCPWQSNVLATGGG----------TSDRHIRIWNV---CSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 262 (318)
T ss_dssp CSCEEEEEECTTSTTEEEEEEC----------TTTCEEEEEET---TTCCEEEEEECSSCEEEEEEETTTTEEEEEECTT
T ss_pred CCceEEEEecCCCCcEEEEEec----------CCCCEEEEEec---ccccccccccceeeeeeeeecccccceEEEEEcC
Confidence 1334678899999887765221 23457888885 4444444455566677889999999998876433
Q ss_pred ccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 478 TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 478 ~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
. ..|+++|+.++ +.......+...+.. ++|+|||++|+...
T Consensus 263 d--~~i~iwd~~~~--~~~~~l~gH~~~V~~------l~~spdg~~l~S~s 303 (318)
T 4ggc_A 263 Q--NQLVIWKYPTM--AKVAELKGHTSRVLS------LTMSPDGATVASAA 303 (318)
T ss_dssp T--CCEEEEETTTC--CEEEEECCCSSCEEE------EEECTTSSCEEEEE
T ss_pred C--CEEEEEECCCC--cEEEEEcCCCCCEEE------EEEcCCCCEEEEEe
Confidence 3 23666677664 444444555555554 88999999988766
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.54 E-value=6.9e-12 Score=135.81 Aligned_cols=279 Identities=10% Similarity=0.131 Sum_probs=171.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+..+.|+|||++|+.... ...|.+++..+++........... +..++|+|||+.|+...
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~---------dg~i~iw~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~~------ 84 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSA---------DKLIKIWGAYDGKFEKTISGHKLG----ISDVAWSSDSNLLVSAS------ 84 (312)
T ss_dssp SCEEEEEECTTSSEEEEEET---------TSCEEEEETTTCCEEEEECCCSSC----EEEEEECTTSSEEEEEE------
T ss_pred CcEEEEEECCCCCEEEEeeC---------CCeEEEEeCCCcccchhhccCCCc----eEEEEEcCCCCEEEEEC------
Confidence 46888999999999988652 346677788777665544333322 67899999999998761
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-ccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~-~~~~~~~~SpDGk~ 345 (954)
....|.++++ +++ ...+... ..+..+.|+|||+.
T Consensus 85 -------------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 121 (312)
T 4ery_A 85 -------------------------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 121 (312)
T ss_dssp -------------------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE
T ss_pred -------------------------------------------CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 1234677787 664 3344444 66788899999999
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
|+..+.+ +.+.+||+..++ ...+..+. ..+..+.|+|||+.++..
T Consensus 122 l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~-------- 167 (312)
T 4ery_A 122 IVSGSFD-------------ESVRIWDVKTGKCLKTLPAHS-------------DPVSAVHFNRDGSLIVSS-------- 167 (312)
T ss_dssp EEEEETT-------------SCEEEEETTTCCEEEEECCCS-------------SCEEEEEECTTSSEEEEE--------
T ss_pred EEEEeCC-------------CcEEEEECCCCEEEEEecCCC-------------CcEEEEEEcCCCCEEEEE--------
Confidence 9888743 389999998554 34443321 234678999999866554
Q ss_pred ccccccCCCeEEEEecCCCCCCCc-eEEe-ecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGP-EILH-KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~-~~l~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 502 (954)
+..+.|.+|++ ..++. ..+. .....+..++|+|+|+.|+....++ .|.++|+.++ +........
T Consensus 168 -----~~d~~i~~wd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~--~~~~~~~~~ 233 (312)
T 4ery_A 168 -----SYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN----TLKLWDYSKG--KCLKTYTGH 233 (312)
T ss_dssp -----ETTSCEEEEET---TTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT----EEEEEETTTT--EEEEEECSS
T ss_pred -----eCCCcEEEEEC---CCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC----eEEEEECCCC--cEEEEEEec
Confidence 33557899996 33332 3332 2334456789999999998876443 3666666664 222223222
Q ss_pred CCCccCCCCCCCeeec-cCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEE
Q 002194 503 SEDVYSDPGSPMMRRT-STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVA 581 (954)
Q Consensus 503 ~~~~~~~~~~~~~~~s-pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 581 (954)
...... ....++ ++|++++... ....|++||+.+++.......... .+..
T Consensus 234 ~~~~~~----~~~~~~~~~~~~l~sg~---------------------~dg~i~vwd~~~~~~~~~~~~h~~----~v~~ 284 (312)
T 4ery_A 234 KNEKYC----IFANFSVTGGKWIVSGS---------------------EDNLVYIWNLQTKEIVQKLQGHTD----VVIS 284 (312)
T ss_dssp CCSSSC----CCEEEECSSSCEEEECC---------------------TTSCEEEEETTTCCEEEEECCCSS----CEEE
T ss_pred CCceEE----EEEEEEeCCCcEEEEEC---------------------CCCEEEEEECCCchhhhhhhccCC----cEEE
Confidence 211111 012343 4566655443 123499999998876654443221 1121
Q ss_pred eccCCccccccccCCEEEEEEecCCCCceEEEEE
Q 002194 582 LMSDQTEGDLYLNQLKILTSKESKTENTQYYIQS 615 (954)
Q Consensus 582 ~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~ 615 (954)
.+|+|+++.++....+. -..+.+|+
T Consensus 285 -------~~~~p~~~~l~s~~~~~--d~~i~~W~ 309 (312)
T 4ery_A 285 -------TACHPTENIIASAALEN--DKTIKLWK 309 (312)
T ss_dssp -------EEECSSSSEEEEEECTT--TCCEEEEE
T ss_pred -------EeecCcCCceEEEEccC--CccEEEec
Confidence 46888888776543222 23455554
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-14 Score=156.94 Aligned_cols=236 Identities=10% Similarity=0.098 Sum_probs=145.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCC-CC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DG 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~-~~ 188 (954)
.+..++|||||++||....+ +.|.+|++.. +..+.+..+. +.
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d---------------------------------~~i~iw~~~~----~~~~~~~~~~~h~ 55 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTAT---------------------------------NQVELYEQDG----NGWKHARTFSDHD 55 (377)
T ss_dssp CCSCCEECSSSSEEECCCSS---------------------------------SCBCEEEEET----TEEEECCCBCCCS
T ss_pred cEEEEEECCCCCEEEEecCC---------------------------------CEEEEEEccC----CceEEEEEEecCC
Confidence 67899999999999987664 4789999854 3212222232 23
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc----eeecccCCCccccccccceeEecCCeEEEEEecC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK----ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~----~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (954)
..+..+.|+|||+.|+.... ...|.++|+++++ ...+..... .+..+.|+|||+.|+....
T Consensus 56 ~~v~~~~~s~~~~~l~s~s~---------d~~v~vwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~- 120 (377)
T 3dwl_C 56 KIVTCVDWAPKSNRIVTCSQ---------DRNAYVYEKRPDGTWKQTLVLLRLNR-----AATFVRWSPNEDKFAVGSG- 120 (377)
T ss_dssp SCEEEEEECTTTCCEEEEET---------TSSEEEC------CCCCEEECCCCSS-----CEEEEECCTTSSCCEEEES-
T ss_pred ceEEEEEEeCCCCEEEEEeC---------CCeEEEEEcCCCCceeeeeEecccCC-----ceEEEEECCCCCEEEEEec-
Confidence 47889999999999988652 3456666776665 233333222 2778999999998887611
Q ss_pred CCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc----eeEcCC-C-cccccc
Q 002194 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----VKEIGP-P-AVYTSL 337 (954)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~----~~~l~~-~-~~~~~~ 337 (954)
...|.++++ +++ .+.+.. . ..+..+
T Consensus 121 ------------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 121 ------------------------------------------------ARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp ------------------------------------------------SSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred ------------------------------------------------CCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence 123555566 443 455554 3 778899
Q ss_pred ccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEecc-CCCccc----CC-ccccccccCccceeeccCCC
Q 002194 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD-LPLAED----IP-IAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 338 ~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~-~~~~~~----~p-~~~~~~~~g~~~~~wspDg~ 411 (954)
+|+|||++|+..+.+ +.+.+||+..+....... .+.... .. ..+ .....+..++|+|||+
T Consensus 153 ~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~ 218 (377)
T 3dwl_C 153 DWHPNNVLLAAGCAD-------------RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN 218 (377)
T ss_dssp EECTTSSEEEEEESS-------------SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred EEcCCCCEEEEEeCC-------------CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence 999999999988744 379999986322110000 000000 00 011 2334567899999999
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCC----ceEEeecccccCceeeccCCceEEEEE
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG----PEILHKLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~----~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (954)
.++.. +..+.|.+|++ .++.. ...+..+...+..++|+|||+.|+...
T Consensus 219 ~l~~~-------------~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 219 ALAYA-------------GHDSSVTIAYP--SAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY 270 (377)
T ss_dssp CEEEE-------------ETTTEEC-CEE--CSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES
T ss_pred EEEEE-------------eCCCcEEEEEC--CCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc
Confidence 77765 34557888886 33333 344556666788899999999887663
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-13 Score=145.45 Aligned_cols=174 Identities=11% Similarity=0.098 Sum_probs=116.6
Q ss_pred HHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 002194 706 LLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (954)
Q Consensus 706 ~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 782 (954)
..|++ .|.|++ .|.+|+|.+.... .......+|+.+.++.+ +.+++.|+||||||.+|+.+|.++|+
T Consensus 58 ~~L~~-~~~vi~---~D~~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~GG~va~~~A~~~p~ 127 (286)
T 2puj_A 58 PFVDA-GYRVIL---KDSPGFNKSDAVVMDEQRGLVNARAVKGLMDAL------DIDRAHLVGNAMGGATALNFALEYPD 127 (286)
T ss_dssp HHHHT-TCEEEE---ECCTTSTTSCCCCCSSCHHHHHHHHHHHHHHHT------TCCCEEEEEETHHHHHHHHHHHHCGG
T ss_pred HHHhc-cCEEEE---ECCCCCCCCCCCCCcCcCHHHHHHHHHHHHHHh------CCCceEEEEECHHHHHHHHHHHhChH
Confidence 44554 599999 6677888886542 22445566666555543 34689999999999999999999999
Q ss_pred cccEEEEeccCCCCCC--C--CC-C------C---cc--------------cc-------chhhh----cHH---HHH--
Q 002194 783 LFCCGIARSGAYNRTL--T--PF-G------F---QN--------------ED-------RTLWE----ATS---TYV-- 818 (954)
Q Consensus 783 ~~~a~v~~~~~~~~~~--~--~~-~------~---~~--------------~~-------~~~~~----~~~---~~~-- 818 (954)
+++++|++++...... . .. . + .. .. ...+. .+. .+.
T Consensus 128 ~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (286)
T 2puj_A 128 RIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLIS 207 (286)
T ss_dssp GEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGGCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hhheEEEECccccCCCcccccchhhHHHHHHHhhCCcHHHHHHHHHHHhcCCccCCHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 9999999987542110 0 00 0 0 00 00 00000 000 000
Q ss_pred -------hcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHH
Q 002194 819 -------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETD 891 (954)
Q Consensus 819 -------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 891 (954)
..+....+.++++|+|+++|++|..+| +..++++.+.+. ..++++++++||... .+....+.+.+.
T Consensus 208 ~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~ 280 (286)
T 2puj_A 208 AQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVP--LDHGLKLLWNID----DARLHVFSKCGAWAQ-WEHADEFNRLVI 280 (286)
T ss_dssp HHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSC--THHHHHHHHHSS----SEEEEEESSCCSCHH-HHTHHHHHHHHH
T ss_pred HhhhhccccchhhHHhhcCCCEEEEEECCCCccC--HHHHHHHHHHCC----CCeEEEeCCCCCCcc-ccCHHHHHHHHH
Confidence 112233567789999999999999998 888887776653 369999999999864 556778888899
Q ss_pred HHHHH
Q 002194 892 RWLQK 896 (954)
Q Consensus 892 ~fl~~ 896 (954)
+||.+
T Consensus 281 ~fl~~ 285 (286)
T 2puj_A 281 DFLRH 285 (286)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99864
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=154.57 Aligned_cols=178 Identities=11% Similarity=0.036 Sum_probs=113.7
Q ss_pred HHHCCcEEEEcCCCCCCCCCCcccc----------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEE-EEeeChHH
Q 002194 708 WLARGFAILGGPTTPIIGEGDEEAN----------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIA-VGGHSYGA 770 (954)
Q Consensus 708 la~~G~~V~~~~~~~~~G~G~~~~~----------------~~~~~~~~~D~~~av~~l~~~~~~d~~ri~-l~G~S~GG 770 (954)
|+++||.|++++.+|. +|.+..+ ........+|+.++++.+ +.+++. |+||||||
T Consensus 94 L~~~g~~vi~~D~~G~--~g~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~~lvGhS~Gg 165 (377)
T 2b61_A 94 LDTDRYFFISSNVLGG--CKGTTGPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEHL------GISHLKAIIGGSFGG 165 (377)
T ss_dssp EETTTCEEEEECCTTC--SSSSSCTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHT------TCCCEEEEEEETHHH
T ss_pred cccCCceEEEecCCCC--CCCCCCCcccCccccccccccCCcccHHHHHHHHHHHHHHc------CCcceeEEEEEChhH
Confidence 4578999999555441 3333221 112344455555554432 345887 99999999
Q ss_pred HHHHHHHHhCCCcccEEEEeccCCCCCC--------------C--CCC---Ccc----c---------------cchhh-
Q 002194 771 FMTANLLAHAPHLFCCGIARSGAYNRTL--------------T--PFG---FQN----E---------------DRTLW- 811 (954)
Q Consensus 771 ~~a~~~a~~~p~~~~a~v~~~~~~~~~~--------------~--~~~---~~~----~---------------~~~~~- 811 (954)
.+|+.+|.++|++++++|++++...... . .+. +.. . ....+
T Consensus 166 ~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (377)
T 2b61_A 166 MQANQWAIDYPDFMDNIVNLCSSIYFSAEAIGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLA 245 (377)
T ss_dssp HHHHHHHHHSTTSEEEEEEESCCSSCCHHHHHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHCchhhheeEEeccCccccccchhHHHHHHHHHhcCccccccchhccCCCchhhhHHHHhhhhcccCHHHHH
Confidence 9999999999999999999998543210 0 000 000 0 00000
Q ss_pred -----------------hcH------------------------HHHHhcC-------cccccCCCCCCEEEEEeCCCCC
Q 002194 812 -----------------EAT------------------------STYVEMS-------PFMSANKLKKPILLVHGEEDNN 843 (954)
Q Consensus 812 -----------------~~~------------------------~~~~~~s-------p~~~~~~~~~P~Lii~G~~D~~ 843 (954)
... ..+...+ ....+.++++|+|+++|++|.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~ 325 (377)
T 2b61_A 246 KAFGRATKSDGSFWGDYFQVESYLSYQGKKFLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQL 325 (377)
T ss_dssp HHTTTCBCTTCCTTSCCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSS
T ss_pred HHhccccccccccccchHHHHHHHHhhhhhhccccChhHHHHHHHHHhccccccccchHHhhhhhcCCCEEEEecCCccc
Confidence 000 0011111 1345678899999999999999
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEEEeC-CCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 844 SGTLTMQSDRFFNALKGHGALCRLVILP-FESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 844 v~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
+| +.+..+..+.+......+++++++ ++||... .+....+.+.|.+||++
T Consensus 326 ~~--~~~~~~~~~~l~~~~~~~~~~~i~~~~gH~~~-~e~p~~~~~~i~~fl~~ 376 (377)
T 2b61_A 326 FK--PIDLYKSKQLLEQSGVDLHFYEFPSDYGHDAF-LVDYDQFEKRIRDGLAG 376 (377)
T ss_dssp SC--HHHHHHHHHHHHHTTCEEEEEEECCTTGGGHH-HHCHHHHHHHHHHHHHT
T ss_pred CC--ccchHHHHHHHHhcCCCceEEEeCCCCCchhh-hcCHHHHHHHHHHHHhc
Confidence 98 866556666666666678999999 9999874 45567888889999865
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-12 Score=160.80 Aligned_cols=252 Identities=10% Similarity=0.044 Sum_probs=167.6
Q ss_pred eeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEE
Q 002194 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (954)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (954)
+.+.+++ ..+..++|||||++|++... ...|.++++.+++........... +..+.|+|||++|+
T Consensus 7 ~~~~~h~--~~v~~i~~sp~~~~la~~~~---------~g~v~iwd~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~ 71 (814)
T 3mkq_A 7 KTFSNRS--DRVKGIDFHPTEPWVLTTLY---------SGRVEIWNYETQVEVRSIQVTETP----VRAGKFIARKNWII 71 (814)
T ss_dssp EEEEEEC--SCEEEEEECSSSSEEEEEET---------TSEEEEEETTTTEEEEEEECCSSC----EEEEEEEGGGTEEE
T ss_pred eeeecCC--CceEEEEECCCCCEEEEEeC---------CCEEEEEECCCCceEEEEecCCCc----EEEEEEeCCCCEEE
Confidence 4444433 46889999999999998652 457888898887654443333222 77899999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-ccccc
Q 002194 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTS 336 (954)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~-~~~~~ 336 (954)
+.. ....|.++++ +|+ ...+... ..+..
T Consensus 72 ~~~-------------------------------------------------~dg~i~vw~~~~~~~~~~~~~~~~~v~~ 102 (814)
T 3mkq_A 72 VGS-------------------------------------------------DDFRIRVFNYNTGEKVVDFEAHPDYIRS 102 (814)
T ss_dssp EEE-------------------------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EEe-------------------------------------------------CCCeEEEEECCCCcEEEEEecCCCCEEE
Confidence 771 1235777888 664 3444444 77889
Q ss_pred cccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc-eE-EEeccCCCcccCCccccccccCccceeecc-CCCCc
Q 002194 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FV-RELCDLPLAEDIPIAFNSVRKGMRSINWRS-DKPST 413 (954)
Q Consensus 337 ~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wsp-Dg~~i 413 (954)
++|||||++|+..+.+ +.+.+|+++++ .. ..+..+. ..+..++|+| ||+.+
T Consensus 103 ~~~s~~~~~l~~~~~d-------------g~i~vw~~~~~~~~~~~~~~~~-------------~~v~~~~~~p~~~~~l 156 (814)
T 3mkq_A 103 IAVHPTKPYVLSGSDD-------------LTVKLWNWENNWALEQTFEGHE-------------HFVMCVAFNPKDPSTF 156 (814)
T ss_dssp EEECSSSSEEEEEETT-------------SEEEEEEGGGTSEEEEEEECCS-------------SCEEEEEEETTEEEEE
T ss_pred EEEeCCCCEEEEEcCC-------------CEEEEEECCCCceEEEEEcCCC-------------CcEEEEEEEcCCCCEE
Confidence 9999999999987733 38999999854 33 3333221 3356789999 77766
Q ss_pred eEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-ccccCceeecc--CCceEEEEEeccccceEEEEEcCCC
Q 002194 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCD--DSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+.. +..+.|.+|++ ..+.....+... ...+..++|+| ||..|+....+ ..|.+++..+
T Consensus 157 ~~~-------------~~dg~v~vwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~ 217 (814)
T 3mkq_A 157 ASG-------------CLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD----LTIKIWDYQT 217 (814)
T ss_dssp EEE-------------ETTSEEEEEET--TCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT----SEEEEEETTT
T ss_pred EEE-------------eCCCeEEEEEC--CCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC----CEEEEEECCC
Confidence 555 34568999996 233334444433 36678899999 89888877543 2466667766
Q ss_pred CCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEec
Q 002194 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (954)
Q Consensus 491 ~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 569 (954)
+ ........+...+.. +.|+|+|++++.... ...|++||+.+++......
T Consensus 218 ~--~~~~~~~~~~~~v~~------~~~~~~~~~l~~~~~---------------------dg~v~vwd~~~~~~~~~~~ 267 (814)
T 3mkq_A 218 K--SCVATLEGHMSNVSF------AVFHPTLPIIISGSE---------------------DGTLKIWNSSTYKVEKTLN 267 (814)
T ss_dssp T--EEEEEEECCSSCEEE------EEECSSSSEEEEEET---------------------TSCEEEEETTTCSEEEEEC
T ss_pred C--cEEEEEcCCCCCEEE------EEEcCCCCEEEEEeC---------------------CCeEEEEECCCCcEEEEee
Confidence 4 333333333333333 789999998887652 1248899998877655443
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=150.56 Aligned_cols=120 Identities=17% Similarity=0.035 Sum_probs=79.8
Q ss_pred EEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCC
Q 002194 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT 720 (954)
Q Consensus 641 ~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~ 720 (954)
...+...+|.+++....-++ + .|.||++||++.... + ..+...+..+||.|++
T Consensus 16 ~~~~~~~~g~~l~~~~~g~~------~--g~~vvllHG~~~~~~------------~----~~~~~~~~~~~~~vi~--- 68 (317)
T 1wm1_A 16 SGWLDTGDGHRIYWELSGNP------N--GKPAVFIHGGPGGGI------------S----PHHRQLFDPERYKVLL--- 68 (317)
T ss_dssp EEEEECSSSCEEEEEEEECT------T--SEEEEEECCTTTCCC------------C----GGGGGGSCTTTEEEEE---
T ss_pred eeEEEcCCCcEEEEEEcCCC------C--CCcEEEECCCCCccc------------c----hhhhhhccccCCeEEE---
Confidence 34466668888876555321 1 355889999742110 0 0011223357999999
Q ss_pred CCCCCCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 721 TPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 721 ~~~~G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
.|.+|+|.+.... .......+|+.+.++.+ +.+++.|+||||||.+++.++.++|++++++|++++.
T Consensus 69 ~D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 139 (317)
T 1wm1_A 69 FDQRGCGRSRPHASLDNNTTWHLVADIERLREMA------GVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIF 139 (317)
T ss_dssp ECCTTSTTCBSTTCCTTCSHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred ECCCCCCCCCCCcccccccHHHHHHHHHHHHHHc------CCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccC
Confidence 6777888875432 12345566665554443 3458999999999999999999999999999998754
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.4e-14 Score=154.06 Aligned_cols=180 Identities=14% Similarity=0.080 Sum_probs=118.1
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccch---------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHH
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEAND---------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMT 773 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---------~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a 773 (954)
.....|+++||.|+. .+.+|+|.+.... ......++|+.++++++.++ .+.+++.++|||+||.++
T Consensus 84 ~~~~~l~~~g~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a 158 (354)
T 2rau_A 84 SIVLYLARNGFNVYT---IDYRTHYVPPFLKDRQLSFTANWGWSTWISDIKEVVSFIKRD--SGQERIYLAGESFGGIAA 158 (354)
T ss_dssp CHHHHHHHTTEEEEE---EECGGGGCCTTCCGGGGGGGTTCSHHHHHHHHHHHHHHHHHH--HCCSSEEEEEETHHHHHH
T ss_pred hHHHHHHhCCCEEEE---ecCCCCCCCCcccccccccccCCcHHHHHHHHHHHHHHHHHh--cCCceEEEEEECHhHHHH
Confidence 356778889999999 4555677664321 12366788999999999876 344689999999999999
Q ss_pred HHHHHhC-CCcccEEEEeccCCCC--CCCCCC-----------------------Cc----------------c---ccc
Q 002194 774 ANLLAHA-PHLFCCGIARSGAYNR--TLTPFG-----------------------FQ----------------N---EDR 808 (954)
Q Consensus 774 ~~~a~~~-p~~~~a~v~~~~~~~~--~~~~~~-----------------------~~----------------~---~~~ 808 (954)
+.++.++ |++++++|++++.... ....+. +. . ...
T Consensus 159 ~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (354)
T 2rau_A 159 LNYSSLYWKNDIKGLILLDGGPTKHGIRPKFYTPEVNSIEEMEAKGIYVIPSRGGPNNPIWSYALANPDMPSPDPKYKSI 238 (354)
T ss_dssp HHHHHHHHHHHEEEEEEESCSCBCTTCC--CCCCSCSSHHHHHHHTCCEEECSSSTTCTHHHHHHHSTTSCCSSTTSSSH
T ss_pred HHHHHhcCccccceEEEecccccccCcccchhhhhhhhHHHhhhhcccccCCCchhhhHHHHHhccccccCccccchhhH
Confidence 9999998 8999999999653211 000000 00 0 000
Q ss_pred hhhhcHHHH----------------------------------HhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHH
Q 002194 809 TLWEATSTY----------------------------------VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (954)
Q Consensus 809 ~~~~~~~~~----------------------------------~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~ 854 (954)
..|-....+ ...+....+.++++|+||+||++|.++| ..++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p---~~~~~l 315 (354)
T 2rau_A 239 SDFLMDSLYVTGSANPYDYPYSKKEDMFPILASFDPYWPYRLSLERDLKFDYEGILVPTIAFVSERFGIQI---FDSKIL 315 (354)
T ss_dssp HHHHHHHHHHTTSCCTTSTTCCCHHHHHHHHHTSCSEEEHHHHHTTTCCCCCTTCCCCEEEEEETTTHHHH---BCGGGS
T ss_pred HHHHHHhhhccccCCcccCCCccHHHHHHHHhhhccccccccccCcccccccccCCCCEEEEecCCCCCCc---cchhhh
Confidence 000000000 0112233455889999999999998764 233222
Q ss_pred HHHHHhCCCcEEEEEeCCCCCcCC--CcccHHHHHHHHHHHHHHh
Q 002194 855 FNALKGHGALCRLVILPFESHGYA--ARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 855 ~~~l~~~g~~~~~~~~~~~~H~~~--~~~~~~~~~~~i~~fl~~~ 897 (954)
....+++++|++||... ..+....+.+.+.+||+++
T Consensus 316 -------~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 353 (354)
T 2rau_A 316 -------PSNSEIILLKGYGHLDVYTGENSEKDVNSVVLKWLSQQ 353 (354)
T ss_dssp -------CTTCEEEEETTCCGGGGTSSTTHHHHTHHHHHHHHHHH
T ss_pred -------ccCceEEEcCCCCCchhhcCCCcHHHHHHHHHHHHHhc
Confidence 23469999999999763 3345678899999999875
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-12 Score=159.97 Aligned_cols=190 Identities=9% Similarity=0.024 Sum_probs=118.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCcccccccc--------ceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceee
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPE--------EKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~ 181 (954)
.+..++|||||++||....++...+++....+ ..+..+.+++ +......+.+..|.+|++.. + .....
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~-~--~~~~~ 94 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS-Q--KVLTT 94 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT-C--SEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC-C--cEEEE
Confidence 46689999999999998887555555443222 2345566676 33234444457899999954 2 12222
Q ss_pred eecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeeccc-------CCCccccccccceeEecC
Q 002194 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQ-------SPDIYLNAIFDNFVWVNN 254 (954)
Q Consensus 182 lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~-------~~~~~~~~~~~~~~wspD 254 (954)
+. ....+..+.|+|||++|+... ....|.++|+++++.....- .........+..++|+|+
T Consensus 95 ~~---~~~~V~~v~~sp~g~~l~sgs---------~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 95 VF---VPGKITSIDTDASLDWMLIGL---------QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp EE---CSSCEEEEECCTTCSEEEEEE---------TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred Ec---CCCCEEEEEECCCCCEEEEEc---------CCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 32 224688899999999998854 25567888888876531110 000011223778999997
Q ss_pred C-eEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee-EcCCC
Q 002194 255 S-TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP 331 (954)
Q Consensus 255 G-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-~l~~~ 331 (954)
+ ..|+... ....+ ++|+ +++.. .+...
T Consensus 163 ~~~~l~~g~-------------------------------------------------~dg~v-lWd~~~~~~~~~~~~~ 192 (902)
T 2oaj_A 163 DIGTVLISY-------------------------------------------------EYVTL-TYSLVENEIKQSFIYE 192 (902)
T ss_dssp EEEEEEEEC-------------------------------------------------SSCEE-EEETTTTEEEEEECCC
T ss_pred CCCEEEEEe-------------------------------------------------CCCcE-EEECCCCceEEEEecc
Confidence 5 5555441 12235 6666 55322 22111
Q ss_pred -------------------ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE
Q 002194 332 -------------------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (954)
Q Consensus 332 -------------------~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~ 378 (954)
..+..++|||||++|+..+.+ +.|.+||+..++.
T Consensus 193 ~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D-------------g~i~lWd~~~g~~ 245 (902)
T 2oaj_A 193 LPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED-------------NSLVFWDANSGHM 245 (902)
T ss_dssp BCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT-------------CCEEEEETTTCCE
T ss_pred cCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC-------------CeEEEEECCCCcE
Confidence 347789999999999988744 3899999986543
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-13 Score=145.74 Aligned_cols=213 Identities=14% Similarity=0.146 Sum_probs=133.8
Q ss_pred cCCC-eEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCC
Q 002194 646 RKDG-VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (954)
Q Consensus 646 ~~~g-~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~ 724 (954)
..+| .+++....- +++.|.||++||....... . ..|. .....|++ .|.|++ .|.+
T Consensus 19 ~~~g~~~l~y~~~G--------~g~~~~vvllHG~~pg~~~---~-----~~w~----~~~~~L~~-~~~via---~Dl~ 74 (291)
T 2wue_A 19 DVDGPLKLHYHEAG--------VGNDQTVVLLHGGGPGAAS---W-----TNFS----RNIAVLAR-HFHVLA---VDQP 74 (291)
T ss_dssp ESSSEEEEEEEEEC--------TTCSSEEEEECCCCTTCCH---H-----HHTT----TTHHHHTT-TSEEEE---ECCT
T ss_pred EeCCcEEEEEEecC--------CCCCCcEEEECCCCCccch---H-----HHHH----HHHHHHHh-cCEEEE---ECCC
Confidence 3578 888766542 1224689999996210000 0 0111 12334544 599999 6777
Q ss_pred CCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC--CC
Q 002194 725 GEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT--LT 799 (954)
Q Consensus 725 G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~--~~ 799 (954)
|+|.+.... .......+|+.+.++.+ +.+++.|+||||||.+++.+|.++|++++++|++++..... ..
T Consensus 75 G~G~S~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~ 148 (291)
T 2wue_A 75 GYGHSDKRAEHGQFNRYAAMALKGLFDQL------GLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFA 148 (291)
T ss_dssp TSTTSCCCSCCSSHHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSSSCCCSSS
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHh------CCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCCCCccccc
Confidence 888886542 23455566766666554 23589999999999999999999999999999998754211 00
Q ss_pred C--C-C------C---c--------------cccc---h----hhh---cHHHH---Hh-----cC-----cc--cccCC
Q 002194 800 P--F-G------F---Q--------------NEDR---T----LWE---ATSTY---VE-----MS-----PF--MSANK 828 (954)
Q Consensus 800 ~--~-~------~---~--------------~~~~---~----~~~---~~~~~---~~-----~s-----p~--~~~~~ 828 (954)
. . . + . .... . .+. .+..+ .. .+ .. ..+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 228 (291)
T 2wue_A 149 PDPTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYR 228 (291)
T ss_dssp CSSCHHHHHHHHHHHSCCHHHHHHHHHTSCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTSTTGGGGCGGGTGGG
T ss_pred cccchhhHHHHHHhccCCHHHHHHHHHHhccCcccCCHHHHHHHHHHhcCchHHHHHHHHHhhccccccccchhHHHHhh
Confidence 0 0 0 0 0 0000 0 000 00000 00 00 11 45667
Q ss_pred CCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 829 LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 829 ~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+++|+|+++|++|..+| +..++++.+.+. +.++++++++||... .+..+.+.+.|.+||.
T Consensus 229 i~~P~lvi~G~~D~~~~--~~~~~~~~~~~p----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 288 (291)
T 2wue_A 229 LRQPVLLIWGREDRVNP--LDGALVALKTIP----RAQLHVFGQCGHWVQ-VEKFDEFNKLTIEFLG 288 (291)
T ss_dssp CCSCEEEEEETTCSSSC--GGGGHHHHHHST----TEEEEEESSCCSCHH-HHTHHHHHHHHHHHTT
T ss_pred CCCCeEEEecCCCCCCC--HHHHHHHHHHCC----CCeEEEeCCCCCChh-hhCHHHHHHHHHHHHh
Confidence 89999999999999998 888877766553 369999999999863 4556777778888874
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=9e-13 Score=145.74 Aligned_cols=238 Identities=12% Similarity=0.082 Sum_probs=160.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCC---CceeeeecCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL---GQEIEIQGFP 186 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~---~~~~~lt~~~ 186 (954)
.+..++|||||+.||....+ ..+.+|++..+... .....+..+
T Consensus 108 ~v~~~~~sp~g~~lasg~~d---------------------------------~~i~v~~~~~~~~~~~~~~~~~~~~h- 153 (354)
T 2pbi_B 108 WVMACAYAPSGCAIACGGLD---------------------------------NKCSVYPLTFDKNENMAAKKKSVAMH- 153 (354)
T ss_dssp CCCEEEECTTSSEEEEESTT---------------------------------SEEEEEECCCCTTCCSGGGCEEEEEC-
T ss_pred CEEEEEECCCCCEEEEeeCC---------------------------------CCEEEEEEeccccccccccceeeecc-
Confidence 56789999999999988775 46788887532111 112333332
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEec--CCeEEEEEecC
Q 002194 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN--NSTLLVCTIPL 264 (954)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp--DG~~l~~~~~~ 264 (954)
...+....|+||++.|+..+ ....|.++|+++++........... +..+.|+| +|+.|+...
T Consensus 154 -~~~v~~~~~~~~~~~l~t~s---------~D~~v~lwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~g~~l~sgs-- 217 (354)
T 2pbi_B 154 -TNYLSACSFTNSDMQILTAS---------GDGTCALWDVESGQLLQSFHGHGAD----VLCLDLAPSETGNTFVSGG-- 217 (354)
T ss_dssp -SSCEEEEEECSSSSEEEEEE---------TTSEEEEEETTTCCEEEEEECCSSC----EEEEEECCCSSCCEEEEEE--
T ss_pred -CCcEEEEEEeCCCCEEEEEe---------CCCcEEEEeCCCCeEEEEEcCCCCC----eEEEEEEeCCCCCEEEEEe--
Confidence 24688899999999988765 2567888899888765544333322 55677776 577777651
Q ss_pred CCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee-EcCCC-ccccccccCC
Q 002194 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSP 341 (954)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-~l~~~-~~~~~~~~Sp 341 (954)
....|.++|+ +|+.. .+... ..+..++|+|
T Consensus 218 -----------------------------------------------~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p 250 (354)
T 2pbi_B 218 -----------------------------------------------CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP 250 (354)
T ss_dssp -----------------------------------------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred -----------------------------------------------CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC
Confidence 1234777788 66543 34333 6788999999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
||+.|+..+.+ +.+.+||+.......+..... ...++..+.|+|||+.++..
T Consensus 251 ~~~~l~s~s~D-------------~~v~lwd~~~~~~~~~~~~~~----------~~~~~~~~~~s~~g~~l~~g----- 302 (354)
T 2pbi_B 251 SGDAFASGSDD-------------ATCRLYDLRADREVAIYSKES----------IIFGASSVDFSLSGRLLFAG----- 302 (354)
T ss_dssp TSSEEEEEETT-------------SCEEEEETTTTEEEEEECCTT----------CCSCEEEEEECTTSSEEEEE-----
T ss_pred CCCEEEEEeCC-------------CeEEEEECCCCcEEEEEcCCC----------cccceeEEEEeCCCCEEEEE-----
Confidence 99999888743 389999998654333222110 11234678999999966554
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEE
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~ 484 (954)
+..+.|.+|++ .++.....+..+...+..++|||||+.|+..+.++. .+||
T Consensus 303 --------~~d~~i~vwd~--~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~--v~vW 353 (354)
T 2pbi_B 303 --------YNDYTINVWDV--LKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT--LRVW 353 (354)
T ss_dssp --------ETTSCEEEEET--TTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSE--EEEE
T ss_pred --------ECCCcEEEEEC--CCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCC--EEec
Confidence 33557899996 344444556667778889999999999998876543 5555
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.6e-13 Score=142.24 Aligned_cols=211 Identities=12% Similarity=0.116 Sum_probs=134.5
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+++.... + + .|.||++||...... .+..|.. ....| +++|.|++ .|..|+
T Consensus 12 ~~g~~l~y~~~---G-----~--g~~vvllHG~~~~~~-----------~~~~w~~-~~~~L-~~~~~vi~---~Dl~G~ 65 (282)
T 1iup_A 12 AAGVLTNYHDV---G-----E--GQPVILIHGSGPGVS-----------AYANWRL-TIPAL-SKFYRVIA---PDMVGF 65 (282)
T ss_dssp ETTEEEEEEEE---C-----C--SSEEEEECCCCTTCC-----------HHHHHTT-THHHH-TTTSEEEE---ECCTTS
T ss_pred ECCEEEEEEec---C-----C--CCeEEEECCCCCCcc-----------HHHHHHH-HHHhh-ccCCEEEE---ECCCCC
Confidence 46877776543 1 1 356999999421100 0001111 12233 68999999 677788
Q ss_pred CCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC---
Q 002194 727 GDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP--- 800 (954)
Q Consensus 727 G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~--- 800 (954)
|.+.... .......+|+.+.++.+ +.+++.|+||||||.+|+.+|.++|++++++|++++........
T Consensus 66 G~S~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~ 139 (282)
T 1iup_A 66 GFTDRPENYNYSKDSWVDHIIGIMDAL------EIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGL 139 (282)
T ss_dssp TTSCCCTTCCCCHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESCCCSCCCCCHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEECHhHHHHHHHHHHChHHHHHHHeeCCccCCCCCCHHH
Confidence 8876542 22455666666666553 33589999999999999999999999999999998754211000
Q ss_pred ---CCCc---------------cc---cch----hhh---c---HHHHHhc-------------CcccccCCCCCCEEEE
Q 002194 801 ---FGFQ---------------NE---DRT----LWE---A---TSTYVEM-------------SPFMSANKLKKPILLV 836 (954)
Q Consensus 801 ---~~~~---------------~~---~~~----~~~---~---~~~~~~~-------------sp~~~~~~~~~P~Lii 836 (954)
+.+. .. ... .+. . ...+... .+...+.++++|+|++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii 219 (282)
T 1iup_A 140 NAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLII 219 (282)
T ss_dssp HHHHTCCSCHHHHHHHHHHHCSSGGGCCHHHHHHHHHHHTSTTHHHHHHHHSCSSTHHHHHHHCCCHHHHTTCCSCEEEE
T ss_pred HHHhcCCCcHHHHHHHHHHhhcCcccCCHHHHHHHHhhccChHHHHHHHHHHhccccccccccccchhhhhhcCCCEEEE
Confidence 0000 00 000 000 0 0001000 0113567889999999
Q ss_pred EeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 837 HGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 837 ~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
+|++|..+| ++.++++.+.+. +.++++++++||... .+..+.+.+.+.+||++
T Consensus 220 ~G~~D~~~p--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 272 (282)
T 1iup_A 220 HGREDQVVP--LSSSLRLGELID----RAQLHVFGRCGHWTQ-IEQTDRFNRLVVEFFNE 272 (282)
T ss_dssp EETTCSSSC--HHHHHHHHHHCT----TEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHT
T ss_pred ecCCCCCCC--HHHHHHHHHhCC----CCeEEEECCCCCCcc-ccCHHHHHHHHHHHHhc
Confidence 999999998 888887776653 369999999999863 56677888889999976
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-12 Score=147.39 Aligned_cols=243 Identities=12% Similarity=-0.007 Sum_probs=147.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCC----CCceeeeecC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGK----LGQEIEIQGF 185 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~----~~~~~~lt~~ 185 (954)
.+..++|+| +.|+..+.+ +.|++|++.. +. ......+..
T Consensus 18 ~i~~~~~~~--~~l~s~~~d---------------------------------g~i~iw~~~~-~~~~~~~~~~~~~~~- 60 (397)
T 1sq9_A 18 DIFSVSACN--SFTVSCSGD---------------------------------GYLKVWDNKL-LDNENPKDKSYSHFV- 60 (397)
T ss_dssp CEEEEEECS--SEEEEEETT---------------------------------SEEEEEESBC-CTTCCGGGGEEEEEC-
T ss_pred CeEEEEecC--CeEEEEcCC---------------------------------CEEEEEECCC-cccccCCCcceEEec-
Confidence 456788988 677777665 5799999964 21 001334433
Q ss_pred CCCCcccceeecCC----C---CeEEEEEeeccccCCCCceEEEEEECCCCc------eeecccCCCccccccccceeEe
Q 002194 186 PDGAKLNFVTWSQD----G---KHLAFSIRIDAEDSSSSKLRVWVADVDTGK------ARPLFQSPDIYLNAIFDNFVWV 252 (954)
Q Consensus 186 ~~~~~~~~~~wSPD----G---~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~------~~~lt~~~~~~~~~~~~~~~ws 252 (954)
+...+..+.|+|| | +.|+... . ...|+++++++++ ...+.......-...+..+.|+
T Consensus 61 -h~~~v~~~~~~~~~~~~g~~~~~l~s~~-------~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 130 (397)
T 1sq9_A 61 -HKSGLHHVDVLQAIERDAFELCLVATTS-------F--SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 130 (397)
T ss_dssp -CTTCEEEEEEEEEEETTTEEEEEEEEEE-------T--TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEE
T ss_pred -CCCcEEEEEEecccccCCccccEEEEEc-------C--CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEe
Confidence 2346889999999 9 8888755 2 3456666666665 4444433200001126789999
Q ss_pred ----cCCeE-EEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C----
Q 002194 253 ----NNSTL-LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D---- 322 (954)
Q Consensus 253 ----pDG~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~---- 322 (954)
|||+. |+... ....|.++++ +
T Consensus 131 ~~~~~~~~~~l~~~~-------------------------------------------------~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 131 ASNDRLLSHRLVATD-------------------------------------------------VKGTTYIWKFHPFADE 161 (397)
T ss_dssp CCC----CEEEEEEE-------------------------------------------------TTSCEEEEEEESSSSH
T ss_pred eccCCCCceEEEEEe-------------------------------------------------CCCcEEEEeCCccccc
Confidence 99998 77651 1123555555 4
Q ss_pred --Cc-ee-----Ec-------CC-CccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEecc--
Q 002194 323 --GT-VK-----EI-------GP-PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCD-- 383 (954)
Q Consensus 323 --G~-~~-----~l-------~~-~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~-- 383 (954)
+. .. .+ .. ...+..++|+||| .|+..+.+ +.+.+||+..++. ..+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~ 227 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-------------GTVQISELSTLRPLYNFESQH 227 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-------------SEEEEEETTTTEEEEEEECCC
T ss_pred cccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-------------CcEEEEECCCCceeEEEeccc
Confidence 32 22 33 11 2667889999999 76666532 3899999986543 33332
Q ss_pred -CCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCC---CeEEEEecCCCCCCCceEEee------
Q 002194 384 -LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPR---DIIYTQQAEPVQGEGPEILHK------ 453 (954)
Q Consensus 384 -~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~g~~~~~l~~------ 453 (954)
+... ...+..++|+|||+.++.. +.. +.|.+|++ .++.....+..
T Consensus 228 ~h~~~----------~~~i~~i~~~~~~~~l~~~-------------~~d~~~g~i~i~d~--~~~~~~~~~~~~~~~~~ 282 (397)
T 1sq9_A 228 SMINN----------SNSIRSVKFSPQGSLLAIA-------------HDSNSFGCITLYET--EFGERIGSLSVPTHSSQ 282 (397)
T ss_dssp ---CC----------CCCEEEEEECSSTTEEEEE-------------EEETTEEEEEEEET--TTCCEEEEECBC-----
T ss_pred ccccc----------CCccceEEECCCCCEEEEE-------------ecCCCCceEEEEEC--CCCcccceeccCccccc
Confidence 1000 1345689999999876655 223 58999996 23333344444
Q ss_pred -------cccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 454 -------LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 454 -------~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+...+..++|+|||+.|+..+.++ .|.++++.++
T Consensus 283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~ 323 (397)
T 1sq9_A 283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDG----KLRFWDVKTK 323 (397)
T ss_dssp ---CCBSBSSCEEEEEECSSSSEEEEEETTS----EEEEEETTTT
T ss_pred ccccccccCCcEEEEEECCCCCEEEEEeCCC----eEEEEEcCCC
Confidence 566778899999999988876433 4666677664
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-13 Score=147.70 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=83.9
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (954)
..+|.+++...+- + .|.||++||.+... ..| ...+..|+++||.|++ .|.+|
T Consensus 17 ~~~g~~l~y~~~G--------~--g~~vvllHG~~~~~-----------~~w----~~~~~~L~~~g~~via---~Dl~G 68 (328)
T 2cjp_A 17 AVNGLNMHLAELG--------E--GPTILFIHGFPELW-----------YSW----RHQMVYLAERGYRAVA---PDLRG 68 (328)
T ss_dssp EETTEEEEEEEEC--------S--SSEEEEECCTTCCG-----------GGG----HHHHHHHHTTTCEEEE---ECCTT
T ss_pred cCCCcEEEEEEcC--------C--CCEEEEECCCCCch-----------HHH----HHHHHHHHHCCcEEEE---ECCCC
Confidence 3578888766541 1 36899999964211 111 1345567778999999 67778
Q ss_pred CCCcccc------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 726 EGDEEAN------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 726 ~G~~~~~------~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
+|.+..+ ........+|+.+.++.+.. +.+++.|+||||||.+|+.+|.++|++++++|++++.
T Consensus 69 ~G~S~~~~~~~~~~~~~~~~a~dl~~~l~~l~~----~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~ 138 (328)
T 2cjp_A 69 YGDTTGAPLNDPSKFSILHLVGDVVALLEAIAP----NEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVH 138 (328)
T ss_dssp STTCBCCCTTCGGGGSHHHHHHHHHHHHHHHCT----TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred CCCCCCcCcCCcccccHHHHHHHHHHHHHHhcC----CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEccC
Confidence 8887543 12356677888888777621 2468999999999999999999999999999998754
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=153.30 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=85.2
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+++...+-|++ + ..|+||++||.+... ..|. .....|+++||.|++ .+..|+
T Consensus 10 ~~g~~l~y~~~G~~~----~--~~~~vv~~hG~~~~~-----------~~~~----~~~~~l~~~g~~vi~---~d~~g~ 65 (356)
T 2e3j_A 10 CRGTRIHAVADSPPD----Q--QGPLVVLLHGFPESW-----------YSWR----HQIPALAGAGYRVVA---IDQRGY 65 (356)
T ss_dssp ETTEEEEEEEECCTT----C--CSCEEEEECCTTCCG-----------GGGT----TTHHHHHHTTCEEEE---ECCTTS
T ss_pred cCCeEEEEEEecCCC----C--CCCEEEEECCCCCcH-----------HHHH----HHHHHHHHcCCEEEE---EcCCCC
Confidence 578899888876542 1 257899999964211 1121 235677889999999 555677
Q ss_pred CCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCC
Q 002194 727 GDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (954)
Q Consensus 727 G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (954)
|.+.... .......+|+.++++.+ +.+++.++|||+||.+++.++.++|++++++|++++..
T Consensus 66 g~s~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 66 GRSSKYRVQKAYRIKELVGDVVGVLDSY------GAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp TTSCCCCSGGGGSHHHHHHHHHHHHHHT------TCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred CCCCCCCcccccCHHHHHHHHHHHHHHc------CCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 7765432 23455666776666654 44689999999999999999999999999999988654
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.51 E-value=8.6e-14 Score=139.08 Aligned_cols=183 Identities=13% Similarity=-0.063 Sum_probs=114.4
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~ 749 (954)
.|+||++||..... . ..+.......|+++||.|+.++++.+ + .+ ......+|+.+.++.
T Consensus 4 ~p~vv~~HG~~~~~-----------~--~~~~~~~~~~l~~~g~~v~~~d~~~~---~---~~--~~~~~~~~~~~~~~~ 62 (192)
T 1uxo_A 4 TKQVYIIHGYRASS-----------T--NHWFPWLKKRLLADGVQADILNMPNP---L---QP--RLEDWLDTLSLYQHT 62 (192)
T ss_dssp CCEEEEECCTTCCT-----------T--STTHHHHHHHHHHTTCEEEEECCSCT---T---SC--CHHHHHHHHHTTGGG
T ss_pred CCEEEEEcCCCCCc-----------c--hhHHHHHHHHHHhCCcEEEEecCCCC---C---CC--CHHHHHHHHHHHHHh
Confidence 58899999964211 1 01122223457789999999776511 1 11 123334443333322
Q ss_pred HHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC--cccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccC
Q 002194 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSAN 827 (954)
Q Consensus 750 l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 827 (954)
. .+++.++||||||.+++.++.++|+ +++++|+++|....... +. ........+ .....+.
T Consensus 63 ------~-~~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~~---~~-~~~~~~~~~------~~~~~~~ 125 (192)
T 1uxo_A 63 ------L-HENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPT---LQ-MLDEFTQGS------FDHQKII 125 (192)
T ss_dssp ------C-CTTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTT---CG-GGGGGTCSC------CCHHHHH
T ss_pred ------c-cCCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCcccc---ch-hhhhhhhcC------CCHHHHH
Confidence 2 4689999999999999999999998 99999999986542110 00 000000000 0012234
Q ss_pred CCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 828 ~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
++++|+|++||++|..+| .+.++++.+.+ +.+++++++++|.+.... . ..+.++.+||.+++.
T Consensus 126 ~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~-~-~~~~~~~~~l~~~l~ 188 (192)
T 1uxo_A 126 ESAKHRAVIASKDDQIVP--FSFSKDLAQQI-----DAALYEVQHGGHFLEDEG-F-TSLPIVYDVLTSYFS 188 (192)
T ss_dssp HHEEEEEEEEETTCSSSC--HHHHHHHHHHT-----TCEEEEETTCTTSCGGGT-C-SCCHHHHHHHHHHHH
T ss_pred hhcCCEEEEecCCCCcCC--HHHHHHHHHhc-----CceEEEeCCCcCcccccc-c-ccHHHHHHHHHHHHH
Confidence 456899999999999998 88888888877 248899999999874221 1 112345677766664
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-13 Score=147.89 Aligned_cols=121 Identities=14% Similarity=-0.005 Sum_probs=81.0
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (954)
+...+...+|.+++...+-++ + .|.||++||++.... + ..+...|..+||.|++
T Consensus 12 ~~~~~~~~~g~~l~y~~~G~~------~--g~pvvllHG~~~~~~------------~----~~~~~~~~~~~~~vi~-- 65 (313)
T 1azw_A 12 QQGSLKVDDRHTLYFEQCGNP------H--GKPVVMLHGGPGGGC------------N----DKMRRFHDPAKYRIVL-- 65 (313)
T ss_dssp EEEEEECSSSCEEEEEEEECT------T--SEEEEEECSTTTTCC------------C----GGGGGGSCTTTEEEEE--
T ss_pred ccceEEcCCCCEEEEEecCCC------C--CCeEEEECCCCCccc------------c----HHHHHhcCcCcceEEE--
Confidence 344456568888876655321 1 356889999642110 0 0011223357999999
Q ss_pred CCCCCCCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 720 TTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 720 ~~~~~G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
.|.+|+|.+.... .......+|+.+.++.+ ..+++.|+||||||.+++.++.++|++++++|++++.
T Consensus 66 -~D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l------~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~ 136 (313)
T 1azw_A 66 -FDQRGSGRSTPHADLVDNTTWDLVADIERLRTHL------GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF 136 (313)
T ss_dssp -ECCTTSTTSBSTTCCTTCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred -ECCCCCcCCCCCcccccccHHHHHHHHHHHHHHh------CCCceEEEEECHHHHHHHHHHHhChhheeEEEEeccc
Confidence 6777888885432 22445566666655543 2358999999999999999999999999999998764
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=145.83 Aligned_cols=196 Identities=12% Similarity=0.158 Sum_probs=127.0
Q ss_pred cEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch------hhHHHHHHHHH
Q 002194 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND------RFVEQLVACAE 744 (954)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~------~~~~~~~~D~~ 744 (954)
|.||++||...... .|.. ....| +++|.|++ .|.+|+|.+.... .......+|+.
T Consensus 21 ~~vvllHG~~~~~~-----------~w~~----~~~~L-~~~~~vi~---~Dl~G~G~S~~~~~~~~~~~~~~~~a~dl~ 81 (271)
T 1wom_A 21 ASIMFAPGFGCDQS-----------VWNA----VAPAF-EEDHRVIL---FDYVGSGHSDLRAYDLNRYQTLDGYAQDVL 81 (271)
T ss_dssp SEEEEECCTTCCGG-----------GGTT----TGGGG-TTTSEEEE---CCCSCCSSSCCTTCCTTGGGSHHHHHHHHH
T ss_pred CcEEEEcCCCCchh-----------hHHH----HHHHH-HhcCeEEE---ECCCCCCCCCCCcccccccccHHHHHHHHH
Confidence 78999999632211 1211 12234 34799999 7778888875421 12455667777
Q ss_pred HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC--C--CCccc-----------cch
Q 002194 745 AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP--F--GFQNE-----------DRT 809 (954)
Q Consensus 745 ~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~--~--~~~~~-----------~~~ 809 (954)
+.++.+ +.+++.++||||||.+++.++.++|++++++|++++........ + .+... ...
T Consensus 82 ~~l~~l------~~~~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (271)
T 1wom_A 82 DVCEAL------DLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYI 155 (271)
T ss_dssp HHHHHT------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCHH
T ss_pred HHHHHc------CCCCeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhHH
Confidence 766554 34689999999999999999999999999999998642110000 0 00000 000
Q ss_pred hhh------------c---HH----HHHh---------------cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHH
Q 002194 810 LWE------------A---TS----TYVE---------------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (954)
Q Consensus 810 ~~~------------~---~~----~~~~---------------~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (954)
.|. . .+ .+.. .+....+.++++|+|+++|++|..+| ...++.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~--~~~~~~~~ 233 (271)
T 1wom_A 156 GWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAP--ATVGKYMH 233 (271)
T ss_dssp HHHHHHHHHHHCCTTCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHTTCCSCEEEEEEETCSSSC--HHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhccccCCCEEEEEcCCCCcCC--HHHHHHHH
Confidence 000 0 00 0000 11223456789999999999999998 77777776
Q ss_pred HHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 856 NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 856 ~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
+.+. ..++++++++||... .+..+.+.+.|.+||++++
T Consensus 234 ~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~~ 271 (271)
T 1wom_A 234 QHLP----YSSLKQMEARGHCPH-MSHPDETIQLIGDYLKAHV 271 (271)
T ss_dssp HHSS----SEEEEEEEEESSCHH-HHCHHHHHHHHHHHHHHHC
T ss_pred HHCC----CCEEEEeCCCCcCcc-ccCHHHHHHHHHHHHHhcC
Confidence 6543 369999999999863 5667788899999998763
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=148.66 Aligned_cols=210 Identities=14% Similarity=0.085 Sum_probs=132.1
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+++...+-+++ .|+||++||++.... .|. .....| ++||.|++ .+.+|+
T Consensus 17 ~~g~~l~~~~~g~~~--------~~~vl~lHG~~~~~~-----------~~~----~~~~~l-~~~~~v~~---~d~~G~ 69 (299)
T 3g9x_A 17 VLGERMHYVDVGPRD--------GTPVLFLHGNPTSSY-----------LWR----NIIPHV-APSHRCIA---PDLIGM 69 (299)
T ss_dssp ETTEEEEEEEESCSS--------SCCEEEECCTTCCGG-----------GGT----TTHHHH-TTTSCEEE---ECCTTS
T ss_pred eCCeEEEEEecCCCC--------CCEEEEECCCCccHH-----------HHH----HHHHHH-ccCCEEEe---eCCCCC
Confidence 478888877764321 467999999742211 121 123344 57999999 566778
Q ss_pred CCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC-CC-
Q 002194 727 GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-FG- 802 (954)
Q Consensus 727 G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-~~- 802 (954)
|.+.... .......+|+.++++.+ +.+++.++|||+||.+++.++.++|++++++|++++........ +.
T Consensus 70 G~s~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 143 (299)
T 3g9x_A 70 GKSDKPDLDYFFDDHVRYLDAFIEAL------GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPE 143 (299)
T ss_dssp TTSCCCCCCCCHHHHHHHHHHHHHHT------TCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEECCCBSSGGGSCG
T ss_pred CCCCCCCCcccHHHHHHHHHHHHHHh------CCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCCcchhhhhhcch
Confidence 8775432 33455666666666654 44689999999999999999999999999999998543321000 00
Q ss_pred -C-------ccc---------cchh--------------hhcH-----------------HHHHhc--------------
Q 002194 803 -F-------QNE---------DRTL--------------WEAT-----------------STYVEM-------------- 820 (954)
Q Consensus 803 -~-------~~~---------~~~~--------------~~~~-----------------~~~~~~-------------- 820 (954)
. ... .... .+.. ..+...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (299)
T 3g9x_A 144 FARETFQAFRTADVGRELIIDQNAFIEGALPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVE 223 (299)
T ss_dssp GGHHHHHHHTSSSHHHHHHTTSCHHHHTHHHHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHH
T ss_pred HHHHHHHHHcCCCcchhhhccchhhHHHhhhhhhccCCCHHHHHHHHHHhccccccchhhhhhhhhhhccccchhhhhhh
Confidence 0 000 0000 0000 000000
Q ss_pred CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 821 sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
+....+.++++|+|+++|++|..+| .+.++++.+.+. .+++++++++||... .+..+.+.+.|.+++.+
T Consensus 224 ~~~~~l~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~~~~~ 292 (299)
T 3g9x_A 224 AYMNWLHQSPVPKLLFWGTPGVLIP--PAEAARLAESLP----NCKTVDIGPGLHYLQ-EDNPDLIGSEIARWLPA 292 (299)
T ss_dssp HHHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHHHST----TEEEEEEEEESSCHH-HHCHHHHHHHHHHHSGG
T ss_pred hhhhhcccCCCCeEEEecCCCCCCC--HHHHHHHHhhCC----CCeEEEeCCCCCcch-hcCHHHHHHHHHHHHhh
Confidence 0111245678999999999999998 888888877663 368999999999863 45555565555555443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.50 E-value=5.4e-12 Score=138.11 Aligned_cols=283 Identities=12% Similarity=0.057 Sum_probs=167.7
Q ss_pred CCCCceecCC-CCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCC--ceeeeecCC
Q 002194 110 PLPALSFSPQ-RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG--QEIEIQGFP 186 (954)
Q Consensus 110 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~--~~~~lt~~~ 186 (954)
.+..++|||| |+.||..+.+ ..|.||++....... ..+.+.+
T Consensus 40 ~V~~v~~sp~~~~~l~S~s~D---------------------------------~~i~vWd~~~~~~~~~~~~~~l~~-- 84 (340)
T 4aow_A 40 WVTQIATTPQFPDMILSASRD---------------------------------KTIIMWKLTRDETNYGIPQRALRG-- 84 (340)
T ss_dssp CEEEEEECTTCTTEEEEEETT---------------------------------SCEEEEEECCSSSCSEEEEEEECC--
T ss_pred CEEEEEEeCCCCCEEEEEcCC---------------------------------CeEEEEECCCCCcccceeeEEEeC--
Confidence 5678999998 5788877775 579999986422111 1122322
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
+...+....|+|||+.|+.... ...|.+++...+............ .....++++++.|+...
T Consensus 85 h~~~V~~~~~s~dg~~l~s~~~---------d~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~s---- 147 (340)
T 4aow_A 85 HSHFVSDVVISSDGQFALSGSW---------DGTLRLWDLTTGTTTRRFVGHTKD----VLSVAFSSDNRQIVSGS---- 147 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEET---------TSEEEEEETTTTEEEEEEECCSSC----EEEEEECTTSSCEEEEE----
T ss_pred CCCCEEEEEECCCCCEEEEEcc---------cccceEEeecccceeeeecCCCCc----eeEEEEeecCccceeec----
Confidence 2246889999999999887542 456778887776554443333221 44677889999888651
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEc--CCC-ccccccccCCC
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI--GPP-AVYTSLDPSPD 342 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l--~~~-~~~~~~~~SpD 342 (954)
. ...+.++++ ....... ... ..+....|+++
T Consensus 148 -----------------~----------------------------d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 148 -----------------R----------------------------DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp -----------------T----------------------------TSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred -----------------C----------------------------CCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence 1 122445555 3222222 112 55667788888
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCceEEE-eccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~-l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
+...++.+... +..+.+||+..++... +..+ ...+..++|+|||+.++..
T Consensus 183 ~~~~~~~s~~~-----------d~~i~i~d~~~~~~~~~~~~h-------------~~~v~~~~~s~~~~~l~s~----- 233 (340)
T 4aow_A 183 SSNPIIVSCGW-----------DKLVKVWNLANCKLKTNHIGH-------------TGYLNTVTVSPDGSLCASG----- 233 (340)
T ss_dssp SSSCEEEEEET-----------TSCEEEEETTTTEEEEEECCC-------------SSCEEEEEECTTSSEEEEE-----
T ss_pred CCCcEEEEEcC-----------CCEEEEEECCCCceeeEecCC-------------CCcEEEEEECCCCCEEEEE-----
Confidence 75543332111 2379999998765433 3222 1345679999999866554
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEec-
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD- 500 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~- 500 (954)
+..+.|.+|++ ...+..........+..+.|+|++..++.. .++ .|.++++.++ .......
T Consensus 234 --------s~Dg~i~iwd~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~----~i~iwd~~~~--~~~~~~~~ 295 (340)
T 4aow_A 234 --------GKDGQAMLWDL---NEGKHLYTLDGGDIINALCFSPNRYWLCAA-TGP----SIKIWDLEGK--IIVDELKQ 295 (340)
T ss_dssp --------ETTCEEEEEET---TTTEEEEEEECSSCEEEEEECSSSSEEEEE-ETT----EEEEEETTTT--EEEEEECC
T ss_pred --------eCCCeEEEEEe---ccCceeeeecCCceEEeeecCCCCceeecc-CCC----EEEEEECCCC--eEEEeccc
Confidence 34568899996 433333333344556788999998766544 222 3555566553 1111111
Q ss_pred --------CCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCC
Q 002194 501 --------RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (954)
Q Consensus 501 --------~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 563 (954)
.....+.. ++|+|||++|+.... ...|++||+++|+
T Consensus 296 ~~~~~~~~~h~~~v~~------l~~s~dg~~l~sgs~---------------------Dg~v~iW~~~tGt 339 (340)
T 4aow_A 296 EVISTSSKAEPPQCTS------LAWSADGQTLFAGYT---------------------DNLVRVWQVTIGT 339 (340)
T ss_dssp C-------CCCCCEEE------EEECTTSSEEEEEET---------------------TSCEEEEEEEC--
T ss_pred cceeeeccCCCCCEEE------EEECCCCCEEEEEeC---------------------CCEEEEEeCCCcC
Confidence 11112222 789999999887652 2249999999886
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.2e-14 Score=153.46 Aligned_cols=205 Identities=15% Similarity=0.112 Sum_probs=129.4
Q ss_pred CeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCC
Q 002194 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGD 728 (954)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~ 728 (954)
+.++....+-+. .|+||++||.+... ..+...+...||.|++ .+..|+|.
T Consensus 69 ~~~~~~~~~g~~---------~~~vv~~hG~~~~~------------------~~~~~~~~~lg~~Vi~---~D~~G~G~ 118 (330)
T 3p2m_A 69 AGAISALRWGGS---------APRVIFLHGGGQNA------------------HTWDTVIVGLGEPALA---VDLPGHGH 118 (330)
T ss_dssp ETTEEEEEESSS---------CCSEEEECCTTCCG------------------GGGHHHHHHSCCCEEE---ECCTTSTT
T ss_pred CceEEEEEeCCC---------CCeEEEECCCCCcc------------------chHHHHHHHcCCeEEE---EcCCCCCC
Confidence 444666665321 46799999964211 0123334455999999 56667787
Q ss_pred cccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC---------
Q 002194 729 EEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR--------- 796 (954)
Q Consensus 729 ~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~--------- 796 (954)
+... ........+|+.++++.+ +.+++.|+|||+||.+++.++.++|++++++|++++....
T Consensus 119 S~~~~~~~~~~~~~a~dl~~~l~~l------~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 192 (330)
T 3p2m_A 119 SAWREDGNYSPQLNSETLAPVLREL------APGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTA 192 (330)
T ss_dssp SCCCSSCBCCHHHHHHHHHHHHHHS------STTCCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHh------CCCCcEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCccchhhhhhhh
Confidence 7532 223455566666666554 3468999999999999999999999999999999864210
Q ss_pred C---CC-----CCCCccccc--------hhhhcHHHHH----hc-------------C----------cccccCCCCCCE
Q 002194 797 T---LT-----PFGFQNEDR--------TLWEATSTYV----EM-------------S----------PFMSANKLKKPI 833 (954)
Q Consensus 797 ~---~~-----~~~~~~~~~--------~~~~~~~~~~----~~-------------s----------p~~~~~~~~~P~ 833 (954)
. .. ...+..... ........+. .. . ....+.++++|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pv 272 (330)
T 3p2m_A 193 EQRGTVALMHGEREFPSFQAMLDLTIAAAPHRDVKSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDALSAPI 272 (330)
T ss_dssp C-----------CCBSCHHHHHHHHHHHCTTSCHHHHHHHHHTTEEECSSSCEEESSCCCSBCCCHHHHHHHHHHCCSCE
T ss_pred hhhhhhhhhcCCccccCHHHHHHHHHhcCCCCCHHHHHHHHHhcccccCCCceEEeechhhCccccHHHHHHHhhCCCCE
Confidence 0 00 000000000 0000000000 00 0 012345678999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEE-EEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR-LVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 834 Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
|+++|++|..+| .+.++++.+.+. ..+ +++++++||... .+..+.+.+.|.+||++
T Consensus 273 Lii~G~~D~~v~--~~~~~~l~~~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 329 (330)
T 3p2m_A 273 TLVRGGSSGFVT--DQDTAELHRRAT----HFRGVHIVEKSGHSVQ-SDQPRALIEIVRGVLDT 329 (330)
T ss_dssp EEEEETTCCSSC--HHHHHHHHHHCS----SEEEEEEETTCCSCHH-HHCHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCC--HHHHHHHHHhCC----CCeeEEEeCCCCCCcc-hhCHHHHHHHHHHHHhc
Confidence 999999999998 888888777653 246 999999999873 55667777888888753
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-12 Score=140.42 Aligned_cols=306 Identities=10% Similarity=-0.007 Sum_probs=163.8
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002194 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (954)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~ 192 (954)
.++++++++.++....+ ..|++|++.+ ++..............
T Consensus 4 g~~~~~~~~~~v~~~~~---------------------------------~~v~~~d~~~----~~~~~~~~~~~~~~~~ 46 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYP---------------------------------NNLHVVDVAS----DTVYKSCVMPDKFGPG 46 (349)
T ss_dssp CCCCCTTCEEEEEEETT---------------------------------TEEEEEETTT----TEEEEEEECSSCCSSC
T ss_pred cccccCCCEEEEEeCCC---------------------------------CeEEEEECCC----CcEEEEEecCCCCCCc
Confidence 56788988877766654 4799999854 3332221122211467
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCc--cccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI--YLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~--~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
.++|||||+.++++.. +...|+++|+++++.......+.. .....+..++|+|||+.|+++.......
T Consensus 47 ~~~~s~dg~~~~v~~~--------~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~-- 116 (349)
T 1jmx_B 47 TAMMAPDNRTAYVLNN--------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL-- 116 (349)
T ss_dssp EEEECTTSSEEEEEET--------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEEC--
T ss_pred eeEECCCCCEEEEEeC--------CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccc--
Confidence 8899999998777542 356899999998876544332210 0001145789999999999872110000
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE----cCCCccccccccCCCCcE
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE----IGPPAVYTSLDPSPDEKY 345 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~----l~~~~~~~~~~~SpDGk~ 345 (954)
....+ .....|+++|+ +|+... ...+..+..++|||||+
T Consensus 117 -----------------------------~~~~~------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 117 -----------------------------NDHYV------VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS- 160 (349)
T ss_dssp -----------------------------SSCEE------ECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-
T ss_pred -----------------------------ccccc------cCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-
Confidence 00000 01356889998 654322 22224456777999999
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceEEE-eccCCCccc---CC----ccccccc----cCccceeeccCCCCc
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAED---IP----IAFNSVR----KGMRSINWRSDKPST 413 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~-l~~~~~~~~---~p----~~~~~~~----~g~~~~~wspDg~~i 413 (954)
|++.+ .++++||+++++... +........ .+ .+..... .....+.+++|++..
T Consensus 161 l~~~~---------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 225 (349)
T 1jmx_B 161 LYVAG---------------PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD 225 (349)
T ss_dssp EEEES---------------SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred EEEcc---------------CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCC
Confidence 55432 168999998665433 322110000 00 0000000 001113333333211
Q ss_pred eEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe--ecccccCceeecc-CCceEEEEEeccccceEEEEEcCCC
Q 002194 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCD-DSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~--~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
... ......++.++. .+++.+.+. ........++||| ||+.|+.. . ..|+++|+.+
T Consensus 226 ~~~------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~---~~v~~~d~~~ 284 (349)
T 1jmx_B 226 PAT------------ADLLYGYLSVDL---KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---L---NRLAKYDLKQ 284 (349)
T ss_dssp -CC------------CEEEEEEEEEET---TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---E---SEEEEEETTT
T ss_pred ccc------------cccceeEEEEec---cCCcEEecccccCCCcceeeEecCCCCCEEEEE---c---CeEEEEECcc
Confidence 000 011123344664 445554442 2233456789999 99988776 2 4689999887
Q ss_pred CCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEE
Q 002194 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (954)
Q Consensus 491 ~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 567 (954)
+ +........ ..... ++|+|||++|+.... ...|++||+++++....
T Consensus 285 ~--~~~~~~~~~-~~~~~------~~~s~dg~~l~~~~~---------------------~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 285 R--KLIKAANLD-HTYYC------VAFDKKGDKLYLGGT---------------------FNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp T--EEEEEEECS-SCCCE------EEECSSSSCEEEESB---------------------SSEEEEEETTTTEEEEE
T ss_pred C--eEEEEEcCC-CCccc------eEECCCCCEEEEecC---------------------CCeEEEEeccccceeee
Confidence 5 322222211 11122 789999998877421 13599999988875433
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.3e-13 Score=148.85 Aligned_cols=297 Identities=8% Similarity=0.118 Sum_probs=172.8
Q ss_pred cccceeecCCCCeEEEEEeecc--ccCCCCceEEEEEECCCCcee---ecccCCCccccccccceeEecCCeEEEEEecC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDA--EDSSSSKLRVWVADVDTGKAR---PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~--~~~~~~~~~l~~~d~~~g~~~---~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (954)
.+..++|||||+.++++..... .........|.++++++++.. ....... .+..++|+|||++|+...
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~-- 86 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDS-----KFNDLDWSHNNKIIAGAL-- 86 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSS-----CEEEEEECSSSSCEEEEE--
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCC-----ceEEEEECCCCCeEEEEc--
Confidence 4677899999985555542110 000033556778888776532 2222222 277899999999998761
Q ss_pred CCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C---C--ceeEcCCC-cccccc
Q 002194 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D---G--TVKEIGPP-AVYTSL 337 (954)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~---G--~~~~l~~~-~~~~~~ 337 (954)
....|.++++ + + ....+... ..+..+
T Consensus 87 -----------------------------------------------~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~ 119 (416)
T 2pm9_A 87 -----------------------------------------------DNGSLELYSTNEANNAINSMARFSNHSSSVKTV 119 (416)
T ss_dssp -----------------------------------------------SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEE
T ss_pred -----------------------------------------------cCCeEEEeecccccccccchhhccCCccceEEE
Confidence 1123556666 3 2 33444444 778899
Q ss_pred ccCCC-CcEEEEEeecCCcccccccCCCCcceEEEeccCceE-------EEeccCCCcccCCccccccccCccceeeccC
Q 002194 338 DPSPD-EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-------RELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (954)
Q Consensus 338 ~~SpD-Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-------~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD 409 (954)
+|+|| ++.|+..+.+ +.|.+||+.+++. ..+.. .......+..++|+||
T Consensus 120 ~~~~~~~~~l~s~~~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~ 176 (416)
T 2pm9_A 120 KFNAKQDNVLASGGNN-------------GEIFIWDMNKCTESPSNYTPLTPGQ----------SMSSVDEVISLAWNQS 176 (416)
T ss_dssp EECSSSTTBEEEECSS-------------SCEEBCBTTTTSSCTTTCCCBCCCC----------SCCSSCCCCEEEECSS
T ss_pred EEcCCCCCEEEEEcCC-------------CeEEEEECCCCcccccccccccccc----------ccCCCCCeeEEEeCCC
Confidence 99999 7777766633 3899999986541 11100 1122245678999999
Q ss_pred CCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEeec------ccccCceeeccCCceEEEEEeccccceE
Q 002194 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKL------DLRYGGISWCDDSLALVYESWYKTRRTR 482 (954)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~------~~~~~~~~~spDg~~l~~~~~~~~~~~~ 482 (954)
+..+++.. +..+.|.+|++ ..++. ..+... ...+..++|+|+|..+++....++....
T Consensus 177 ~~~~l~~~------------~~dg~v~iwd~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~ 241 (416)
T 2pm9_A 177 LAHVFASA------------GSSNFASIWDL---KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS 241 (416)
T ss_dssp CTTEEEEE------------SSSSCEEEEET---TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred CCcEEEEE------------cCCCCEEEEEC---CCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence 65554441 33557899996 43333 333322 4567789999998655444443321124
Q ss_pred EEEEcCCCCCCCcEEEec-CCCCCccCCCCCCCeeecc-CCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECC
Q 002194 483 TWVISPGSKDVAPRILFD-RSSEDVYSDPGSPMMRRTS-TGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN 560 (954)
Q Consensus 483 l~~~d~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 560 (954)
|.++|+.++. .+..... .+...+.. +.|+| +|++++.... ...|++||+.
T Consensus 242 i~~~d~~~~~-~~~~~~~~~~~~~v~~------~~~s~~~~~~l~s~~~---------------------dg~v~~wd~~ 293 (416)
T 2pm9_A 242 ILIWDLRNAN-TPLQTLNQGHQKGILS------LDWCHQDEHLLLSSGR---------------------DNTVLLWNPE 293 (416)
T ss_dssp CCEEETTSTT-SCSBCCCSCCSSCEEE------EEECSSCSSCEEEEES---------------------SSEEEEECSS
T ss_pred EEEEeCCCCC-CCcEEeecCccCceeE------EEeCCCCCCeEEEEeC---------------------CCCEEEeeCC
Confidence 5556665531 2222222 23333333 78999 8888887762 2359999999
Q ss_pred CCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCc
Q 002194 561 TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (954)
Q Consensus 561 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~ 620 (954)
+++.......... .+ ...+|+||+..++++... -..+.+|++.+++
T Consensus 294 ~~~~~~~~~~~~~----~v-------~~~~~s~~~~~~l~s~~~---d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 294 SAEQLSQFPARGN----WC-------FKTKFAPEAPDLFACASF---DNKIEVQTLQNLT 339 (416)
T ss_dssp SCCEEEEEECSSS----CC-------CCEEECTTCTTEEEECCS---SSEEEEEESCCCC
T ss_pred CCccceeecCCCC----ce-------EEEEECCCCCCEEEEEec---CCcEEEEEccCCC
Confidence 8876554433211 01 125789999444443332 3568899987654
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-13 Score=144.81 Aligned_cols=215 Identities=13% Similarity=0.139 Sum_probs=133.3
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+++.... + . .|.||++||+....... ..|. .....|+ ++|.|++ .+.+|+
T Consensus 23 ~~g~~l~y~~~---g-----~--g~~vvllHG~~~~~~~~--------~~~~----~~~~~L~-~~~~vi~---~Dl~G~ 76 (296)
T 1j1i_A 23 AGGVETRYLEA---G-----K--GQPVILIHGGGAGAESE--------GNWR----NVIPILA-RHYRVIA---MDMLGF 76 (296)
T ss_dssp ETTEEEEEEEE---C-----C--SSEEEEECCCSTTCCHH--------HHHT----TTHHHHT-TTSEEEE---ECCTTS
T ss_pred ECCEEEEEEec---C-----C--CCeEEEECCCCCCcchH--------HHHH----HHHHHHh-hcCEEEE---ECCCCC
Confidence 47888775543 1 1 35789999952110000 0011 1233444 4599999 666788
Q ss_pred CCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC-----
Q 002194 727 GDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT----- 799 (954)
Q Consensus 727 G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~----- 799 (954)
|.+... ........+|+.+.++.+ + + .+++.|+||||||.+|+.++.++|++++++|++++.......
T Consensus 77 G~S~~~~~~~~~~~~~~dl~~~l~~l---~-~-~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~ 151 (296)
T 1j1i_A 77 GKTAKPDIEYTQDRRIRHLHDFIKAM---N-F-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLR 151 (296)
T ss_dssp TTSCCCSSCCCHHHHHHHHHHHHHHS---C-C-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhc---C-C-CCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHH
Confidence 887621 122445566665555443 2 2 158999999999999999999999999999999875421100
Q ss_pred C-CCCcc---------------cc-------chhhhc------HHHHHh-----------cCcccccCCCCCCEEEEEeC
Q 002194 800 P-FGFQN---------------ED-------RTLWEA------TSTYVE-----------MSPFMSANKLKKPILLVHGE 839 (954)
Q Consensus 800 ~-~~~~~---------------~~-------~~~~~~------~~~~~~-----------~sp~~~~~~~~~P~Lii~G~ 839 (954)
. +.+.. .. ...+.. ...+.. ......+.++++|+|+++|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~ 231 (296)
T 1j1i_A 152 PIINYDFTREGMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGK 231 (296)
T ss_dssp ----CCSCHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEET
T ss_pred HHhcccCCchHHHHHHHHhccCcccccHHHHHHHHHHhhCcchhhHHHHHHHHHHhcccccccHHHhhcCCCCEEEEEEC
Confidence 0 00000 00 000000 000100 01223467889999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
+|..+| ++.+.++.+.+. +.++++++++||... .+..+.+.+.|.+||.+.+.
T Consensus 232 ~D~~~~--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~~~ 284 (296)
T 1j1i_A 232 DDKVVP--VETAYKFLDLID----DSWGYIIPHCGHWAM-IEHPEDFANATLSFLSLRVD 284 (296)
T ss_dssp TCSSSC--HHHHHHHHHHCT----TEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHHC--
T ss_pred CCcccC--HHHHHHHHHHCC----CCEEEEECCCCCCch-hcCHHHHHHHHHHHHhccCC
Confidence 999998 888887776653 368999999999864 56678888999999998763
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.50 E-value=5e-12 Score=137.50 Aligned_cols=285 Identities=9% Similarity=0.069 Sum_probs=167.8
Q ss_pred CcccceeecCCC-CeEEEEEeeccccCCCCceEEEEEECCCC---ce-eecccCCCccccccccceeEecCCeEEEEEec
Q 002194 189 AKLNFVTWSQDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTG---KA-RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (954)
Q Consensus 189 ~~~~~~~wSPDG-~~iaf~~~~~~~~~~~~~~~l~~~d~~~g---~~-~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (954)
..+...+|+|++ +.|+..+ .++...||-+..... .. +.+..+.. .+..+.|+|||++|+...
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s-------~D~~v~~W~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~s~dg~~l~s~s- 84 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSAS-------RDKTLISWKLTGDDQKFGVPVRSFKGHSH-----IVQDCTLTADGAYALSAS- 84 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEE-------TTSEEEEEEEEEETTEEEEEEEEEECCSS-----CEEEEEECTTSSEEEEEE-
T ss_pred ceEEEEEccCCCccEEEEec-------CCccEEEecCCCCCccccccceEEeCCcc-----cEEEEEECCCCCEEEEEe-
Confidence 468889999977 5555433 334555554432221 11 12222222 267899999999998761
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-ccccccccC
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPS 340 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~-~~~~~~~~S 340 (954)
....|.++|+ +|+. +.+... ..+..++|+
T Consensus 85 ------------------------------------------------~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~ 116 (319)
T 3frx_A 85 ------------------------------------------------WDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116 (319)
T ss_dssp ------------------------------------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred ------------------------------------------------CCCEEEEEECCCCCeeEEEccCCCcEEEEEEc
Confidence 1234777788 7754 344444 778899999
Q ss_pred CCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC------Cce
Q 002194 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP------STL 414 (954)
Q Consensus 341 pDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~------~i~ 414 (954)
|||+.|+..+.+ +.+.+||+++.....+..+. ..+..+.|+|+++ .++
T Consensus 117 ~~~~~l~s~s~D-------------~~i~vwd~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~~~~~~~l~ 170 (319)
T 3frx_A 117 KKASMIISGSRD-------------KTIKVWTIKGQCLATLLGHN-------------DWVSQVRVVPNEKADDDSVTII 170 (319)
T ss_dssp TTSCEEEEEETT-------------SCEEEEETTSCEEEEECCCS-------------SCEEEEEECCC------CCEEE
T ss_pred CCCCEEEEEeCC-------------CeEEEEECCCCeEEEEeccC-------------CcEEEEEEccCCCCCCCccEEE
Confidence 999999988744 38999999877665554332 2345677888543 222
Q ss_pred EEEEeccCCCccccccCCCeEEEEecCCCCCCC-ceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCC
Q 002194 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV 493 (954)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~ 493 (954)
.. +..+.|.+|++ ...+ ...+..+...+..++|+|||+.|+..+.++ .|.++|+.++
T Consensus 171 s~-------------~~d~~i~~wd~---~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg----~i~iwd~~~~-- 228 (319)
T 3frx_A 171 SA-------------GNDKMVKAWNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG----EIMLWNLAAK-- 228 (319)
T ss_dssp EE-------------ETTSCEEEEET---TTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTC----EEEEEETTTT--
T ss_pred EE-------------eCCCEEEEEEC---CcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCC----eEEEEECCCC--
Confidence 22 33557889986 3332 234455667788899999999998876543 3555566654
Q ss_pred CcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcc
Q 002194 494 APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKE 573 (954)
Q Consensus 494 ~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 573 (954)
+....... ...+.. ++|+|||.+++.... ..+.+|+++++...........
T Consensus 229 ~~~~~~~~-~~~v~~------~~~sp~~~~la~~~~----------------------~~i~v~~~~~~~~~~~~~~~~~ 279 (319)
T 3frx_A 229 KAMYTLSA-QDEVFS------LAFSPNRYWLAAATA----------------------TGIKVFSLDPQYLVDDLRPEFA 279 (319)
T ss_dssp EEEEEEEC-CSCEEE------EEECSSSSEEEEEET----------------------TEEEEEEETTEEEEEEECCCCT
T ss_pred cEEEEecC-CCcEEE------EEEcCCCCEEEEEcC----------------------CCcEEEEeCcCeeeeccCcccc
Confidence 22222222 122333 889999999887651 1277777776544332222110
Q ss_pred cccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002194 574 KYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (954)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~ 618 (954)
.+..... ......+|||||+.|+..... ..+++|++.+
T Consensus 280 ~~~~~~~---~~v~~~~~spdg~~l~sg~~D----g~i~vWd~~t 317 (319)
T 3frx_A 280 GYSKAAE---PHAVSLAWSADGQTLFAGYTD----NVIRVWQVMT 317 (319)
T ss_dssp TCCGGGC---CCEEEEEECTTSSEEEEEETT----SCEEEEEEEE
T ss_pred ccccCcC---cceeEEEECCCCCEEEEeecC----ceEEEEEEee
Confidence 0000000 000125799999988754433 3477777544
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-14 Score=154.12 Aligned_cols=222 Identities=15% Similarity=0.145 Sum_probs=138.4
Q ss_pred CceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-----
Q 002194 637 LQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA----- 710 (954)
Q Consensus 637 ~~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~----- 710 (954)
...+.+++.+. -|.+...++|+|++|++. +.++|+|+++||... |.. .......+..
T Consensus 10 ~~v~~~~~~S~~l~~~r~~~VylP~~y~~~-~~~yPVlylldG~~~---------------f~~-~~~~~~~l~~~~~~~ 72 (331)
T 3gff_A 10 VEYQSKRLESRLLKETREYVIALPEGYAQS-LEAYPVVYLLDGEDQ---------------FDH-MASLLQFLSQGTMPQ 72 (331)
T ss_dssp -CEEEEEEEETTTTEEEEEEEECCTTGGGS-CCCEEEEEESSHHHH---------------HHH-HHHHHHHHTCSSSCS
T ss_pred ceEEEEEEEecCCCCeEEEEEEeCCCCCCC-CCCccEEEEecChhh---------------hHH-HHHHHHHHHhhhhcC
Confidence 34677777776 478999999999999763 235999999999410 100 0112223322
Q ss_pred -CCcEEEEcCCCC----CC-------CCCCc----c----cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHH
Q 002194 711 -RGFAILGGPTTP----II-------GEGDE----E----ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGA 770 (954)
Q Consensus 711 -~G~~V~~~~~~~----~~-------G~G~~----~----~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG 770 (954)
.+++||.+++.+ +. ..|.. . ....+.....+ +.+.++.++..+++.+ +|+|+||||
T Consensus 73 ~~~~IvV~i~~~~R~~dytp~~~~~~~~G~~~~~~~~~~g~~~~~~~~l~~---el~p~i~~~~~~~~~r-~i~G~S~GG 148 (331)
T 3gff_A 73 IPKVIIVGIHNTNRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEK---ELAPSIESQLRTNGIN-VLVGHSFGG 148 (331)
T ss_dssp SCCCEEEEECCSSHHHHSCSSCCSBCTTSSBCCGGGGGCCCHHHHHHHHHH---THHHHHHHHSCEEEEE-EEEEETHHH
T ss_pred CCCEEEEEECCCCcccccCCCccccccccccccccCCCCCcHHHHHHHHHH---HHHHHHHHHCCCCCCe-EEEEECHHH
Confidence 357777743310 00 00100 0 01122222232 4455666666666655 799999999
Q ss_pred HHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCC-------C
Q 002194 771 FMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDN-------N 843 (954)
Q Consensus 771 ~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~-------~ 843 (954)
++|++++.++|+.|+++++++|.+.+. .....+....+. ........|+++.||+.|. .
T Consensus 149 ~~al~~~~~~p~~F~~~~~~S~~~w~~---------~~~~~~~~~~~~-----~~~~~~~~~l~l~~G~~d~~~~~~~~~ 214 (331)
T 3gff_A 149 LVAMEALRTDRPLFSAYLALDTSLWFD---------SPHYLTLLEERV-----VKGDFKQKQLFMAIANNPLSPGFGVSS 214 (331)
T ss_dssp HHHHHHHHTTCSSCSEEEEESCCTTTT---------TTHHHHHHHHHH-----HHCCCSSEEEEEEECCCSEETTTEECC
T ss_pred HHHHHHHHhCchhhheeeEeCchhcCC---------hHHHHHHHHHHh-----hcccCCCCeEEEEeCCCCCCCccchHH
Confidence 999999999999999999999964211 011111111111 1112245799999999998 4
Q ss_pred CCCchHHHHHHHHHHHhC---CCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 844 SGTLTMQSDRFFNALKGH---GALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 844 v~~~~~~~~~~~~~l~~~---g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
++ ...+++++++|+.. |.++++.+||+++|.... ...+...++||-....
T Consensus 215 ~~--~~~~~~l~~~Lk~~~~~g~~~~~~~~pg~~H~sv~----~~~~~~~l~~lf~~~~ 267 (331)
T 3gff_A 215 YH--KDLNLAFADKLTKLAPKGLGFMAKYYPEETHQSVS----HIGLYDGIRHLFKDFA 267 (331)
T ss_dssp HH--HHHHHHHHHHHHHHCCTTEEEEEEECTTCCTTTHH----HHHHHHHHHHHHGGGC
T ss_pred HH--HHHHHHHHHHHHhccCCCceEEEEECCCCCccccH----HHHHHHHHHHHHhhcC
Confidence 55 77889999999986 778999999999998632 2334455666655443
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=146.21 Aligned_cols=194 Identities=11% Similarity=0.136 Sum_probs=124.2
Q ss_pred cEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh---hHHHHHHHHHHHH
Q 002194 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR---FVEQLVACAEAAV 747 (954)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~---~~~~~~~D~~~av 747 (954)
|.||++||.+.... .|. ..+..|++ +|.|++ .|.+|+|.+..... ......+|+.+.+
T Consensus 17 ~~vvllHG~~~~~~-----------~~~----~~~~~L~~-~~~vi~---~Dl~G~G~S~~~~~~~~~~~~~~~dl~~~l 77 (269)
T 2xmz_A 17 QVLVFLHGFLSDSR-----------TYH----NHIEKFTD-NYHVIT---IDLPGHGEDQSSMDETWNFDYITTLLDRIL 77 (269)
T ss_dssp EEEEEECCTTCCGG-----------GGT----TTHHHHHT-TSEEEE---ECCTTSTTCCCCTTSCCCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCcHH-----------HHH----HHHHHHhh-cCeEEE---ecCCCCCCCCCCCCCccCHHHHHHHHHHHH
Confidence 45999999742211 121 23445554 599999 67778888865422 3455666666665
Q ss_pred HHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC---------------------------
Q 002194 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP--------------------------- 800 (954)
Q Consensus 748 ~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~--------------------------- 800 (954)
+.+ +.+++.++||||||.+|+.++.++|++++++|++++........
T Consensus 78 ~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (269)
T 2xmz_A 78 DKY------KDKSITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIKEEANQLERRLVDDARAKVLDIAGIELFVND 151 (269)
T ss_dssp GGG------TTSEEEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCSCCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHc------CCCcEEEEEECchHHHHHHHHHhCchheeeeEEEcCCcccCCchhHHHHhhhhhHHHHhhccccHHHHHHH
Confidence 553 34689999999999999999999999999999998753321000
Q ss_pred CC----Cccc---cc----hhhh-----cHH----HHHh------cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHH
Q 002194 801 FG----FQNE---DR----TLWE-----ATS----TYVE------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (954)
Q Consensus 801 ~~----~~~~---~~----~~~~-----~~~----~~~~------~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~ 854 (954)
+. +... .. ..+. ... .+.. .+....+.++++|+|+++|++|..+| .... ++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~-~~ 228 (269)
T 2xmz_A 152 WEKLPLFQSQLELPVEIQHQIRQQRLSQSPHKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEYDEKFV--QIAK-KM 228 (269)
T ss_dssp HTTSGGGGGGGGSCHHHHHHHHHHHHTSCHHHHHHHHHHHSTTTSCCCGGGGGGCCSCEEEEEETTCHHHH--HHHH-HH
T ss_pred HHhCccccccccCCHHHHHHHHHHHhccCcHHHHHHHHHHHhccCccHHHHHHhcCCCEEEEEeCCCcccC--HHHH-HH
Confidence 00 0000 00 0000 000 0000 01123456789999999999999886 5543 34
Q ss_pred HHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 855 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
.+.+ .++++++++++||... .+..+.+.+.|.+||++.
T Consensus 229 ~~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 266 (269)
T 2xmz_A 229 ANLI----PNSKCKLISATGHTIH-VEDSDEFDTMILGFLKEE 266 (269)
T ss_dssp HHHS----TTEEEEEETTCCSCHH-HHSHHHHHHHHHHHHHHH
T ss_pred HhhC----CCcEEEEeCCCCCChh-hcCHHHHHHHHHHHHHHh
Confidence 4333 3479999999999874 456778889999999864
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.1e-13 Score=143.08 Aligned_cols=170 Identities=16% Similarity=0.119 Sum_probs=111.1
Q ss_pred HCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccE
Q 002194 710 ARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (954)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a 786 (954)
+++|.|++ .+.+|+|.+.... .......+|+.+.++.+ +.+++.|+||||||.+++.++.++|+++++
T Consensus 64 ~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvGhS~GG~ia~~~a~~~p~~v~~ 134 (289)
T 1u2e_A 64 EAGYRVIL---LDCPGWGKSDSVVNSGSRSDLNARILKSVVDQL------DIAKIHLLGNSMGGHSSVAFTLKWPERVGK 134 (289)
T ss_dssp HTTCEEEE---ECCTTSTTSCCCCCSSCHHHHHHHHHHHHHHHT------TCCCEEEEEETHHHHHHHHHHHHCGGGEEE
T ss_pred hcCCeEEE---EcCCCCCCCCCCCccccCHHHHHHHHHHHHHHh------CCCceEEEEECHhHHHHHHHHHHCHHhhhE
Confidence 45599999 6667888875532 22334445555544432 346899999999999999999999999999
Q ss_pred EEEeccCCCCCC--CCCC---------------------------Ccccc--ch----hhh----cHHHHH---------
Q 002194 787 GIARSGAYNRTL--TPFG---------------------------FQNED--RT----LWE----ATSTYV--------- 818 (954)
Q Consensus 787 ~v~~~~~~~~~~--~~~~---------------------------~~~~~--~~----~~~----~~~~~~--------- 818 (954)
+|++++...... .... +.... .. .+. .+..+.
T Consensus 135 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (289)
T 1u2e_A 135 LVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLTDALFEARLNNMLSRRDHLENFVKSLEAN 214 (289)
T ss_dssp EEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHTTSSCTTSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred EEEECCCccccccccccchhhHHHHHHHHhcchHHHHHHHHHHhhcCcccCCHHHHHHHHHHhhcChhHHHHHHHHHHhc
Confidence 999987542100 0000 00000 00 000 000010
Q ss_pred ---hcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 819 ---EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 819 ---~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
..+....+.++++|+|+++|++|..+| ++.++++.+.+.. .++++++++||... .+....+.+.+.+||.
T Consensus 215 ~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~~----~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 287 (289)
T 1u2e_A 215 PKQFPDFGPRLAEIKAQTLIVWGRNDRFVP--MDAGLRLLSGIAG----SELHIFRDCGHWAQ-WEHADAFNQLVLNFLA 287 (289)
T ss_dssp SCCSCCCGGGGGGCCSCEEEEEETTCSSSC--THHHHHHHHHSTT----CEEEEESSCCSCHH-HHTHHHHHHHHHHHHT
T ss_pred cccccchhhHHhhcCCCeEEEeeCCCCccC--HHHHHHHHhhCCC----cEEEEeCCCCCchh-hcCHHHHHHHHHHHhc
Confidence 011223567789999999999999998 8888888776643 48899999999863 4556677778888874
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=142.68 Aligned_cols=196 Identities=14% Similarity=0.103 Sum_probs=124.7
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVE 748 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~ 748 (954)
.|.||++||.+... ..| ......|++ .|.|++ .|.+|+|.+.... .......+|+.+.++
T Consensus 16 ~~~vvllHG~~~~~-----------~~w----~~~~~~L~~-~~~via---~Dl~G~G~S~~~~~~~~~~~a~dl~~~l~ 76 (255)
T 3bf7_A 16 NSPIVLVHGLFGSL-----------DNL----GVLARDLVN-DHNIIQ---VDVRNHGLSPREPVMNYPAMAQDLVDTLD 76 (255)
T ss_dssp CCCEEEECCTTCCT-----------TTT----HHHHHHHTT-TSCEEE---ECCTTSTTSCCCSCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcccH-----------hHH----HHHHHHHHh-hCcEEE---ecCCCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 46789999964211 112 123444544 499999 6677888875532 234566777777777
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCC-CCCCCCC-------------CCcccc--chh--
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY-NRTLTPF-------------GFQNED--RTL-- 810 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~-~~~~~~~-------------~~~~~~--~~~-- 810 (954)
.+ +.+++.++||||||.+|+.++.++|++++++|++++.. ......+ .+.... ...
T Consensus 77 ~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (255)
T 3bf7_A 77 AL------QIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMR 150 (255)
T ss_dssp HH------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCCSCCCHHHHHHHHHHHHSCCCSHHHHHHHHT
T ss_pred Hc------CCCCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcCCcccCCcccHHHHHHHHHhccccccccHHHHHHHHh
Confidence 65 23589999999999999999999999999999875321 1000000 000000 000
Q ss_pred --------------------hhc-HHH----HHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcE
Q 002194 811 --------------------WEA-TST----YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALC 865 (954)
Q Consensus 811 --------------------~~~-~~~----~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~ 865 (954)
|.. ... +........+.++++|+|+++|++|..++ +..++++.+.+. +.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~~----~~ 224 (255)
T 3bf7_A 151 QHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVS--EQYRDDLLAQFP----QA 224 (255)
T ss_dssp TTCCCHHHHHHHHTTEETTEESSCHHHHHHTHHHHHCCCCCCCCCSCEEEECBTTCSTTC--GGGHHHHHHHCT----TE
T ss_pred hhcchhHHHHHHHHhccCCceeecHHHHHhhhhhccccccccccCCCeEEEECCCCCCCC--HHHHHHHHHHCC----CC
Confidence 000 000 00000001245788999999999999988 777777765543 37
Q ss_pred EEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 866 RLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 866 ~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
+++++|++||... .+....+.+.+.+||.+|
T Consensus 225 ~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 255 (255)
T 3bf7_A 225 RAHVIAGAGHWVH-AEKPDAVLRAIRRYLNDH 255 (255)
T ss_dssp EECCBTTCCSCHH-HHCHHHHHHHHHHHHHTC
T ss_pred eEEEeCCCCCccc-cCCHHHHHHHHHHHHhcC
Confidence 9999999999863 556678888999998754
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-12 Score=152.47 Aligned_cols=244 Identities=11% Similarity=0.037 Sum_probs=153.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCC-CceeeeecCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL-GQEIEIQGFPDG 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~-~~~~~lt~~~~~ 188 (954)
.+..++|||||++||+.... .|.+|++.+.... .....+.. +.
T Consensus 20 ~v~~~~~spdg~~l~~~~~~----------------------------------~v~v~~~~~~~~~~~~~~~~~~--h~ 63 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPCGK----------------------------------SAFVRCLDDGDSKVPPVVQFTG--HG 63 (615)
T ss_dssp CCCCCEEETTTTEEEEEETT----------------------------------EEEEEECCSSCCSSCSEEEECT--TT
T ss_pred ceeEEEECCCCCEEEEecCC----------------------------------eEEEEECCCCCCccccceEEec--CC
Confidence 57789999999999998853 7899998641000 12334433 23
Q ss_pred Cc-ccceeecC--CCCeEEEEEeeccccCCCCceEEEEEECCCC--------ceeecccCCCccccccccceeEecCCeE
Q 002194 189 AK-LNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--------KARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (954)
Q Consensus 189 ~~-~~~~~wSP--DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g--------~~~~lt~~~~~~~~~~~~~~~wspDG~~ 257 (954)
.. +..++||| ||++|+... . ...|.+++++++ +.......... .+..++|+|||+.
T Consensus 64 ~~~v~~~~~sp~~~~~~l~s~~-------~--dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~ 130 (615)
T 1pgu_A 64 SSVVTTVKFSPIKGSQYLCSGD-------E--SGKVIVWGWTFDKESNSVEVNVKSEFQVLAG----PISDISWDFEGRR 130 (615)
T ss_dssp TSCEEEEEECSSTTCCEEEEEE-------T--TSEEEEEEEEEEGGGTEEEEEEEEEEECCSS----CEEEEEECTTSSE
T ss_pred CceEEEEEECcCCCCCEEEEec-------C--CCEEEEEeCCCCcccccccccccchhhcccc----cEEEEEEeCCCCE
Confidence 46 88999999 999998865 2 345555565443 22221111221 2778999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-ccccc
Q 002194 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTS 336 (954)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-~~~~~ 336 (954)
|++...... ....|+.++.......+... ..+..
T Consensus 131 l~~~~~~~~---------------------------------------------~~~~v~~~d~~~~~~~~~~~~~~v~~ 165 (615)
T 1pgu_A 131 LCVVGEGRD---------------------------------------------NFGVFISWDSGNSLGEVSGHSQRINA 165 (615)
T ss_dssp EEEEECCSS---------------------------------------------CSEEEEETTTCCEEEECCSCSSCEEE
T ss_pred EEEeccCCC---------------------------------------------CccEEEEEECCCcceeeecCCccEEE
Confidence 987721100 11345555533334444444 77888
Q ss_pred cccCCCCcE-EEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccC-CCCc
Q 002194 337 LDPSPDEKY-ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSD-KPST 413 (954)
Q Consensus 337 ~~~SpDGk~-l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD-g~~i 413 (954)
++|+|||+. ++..+ . ++.+.+||+...+. ..+..+... ...+..++|+|| |+.+
T Consensus 166 ~~~~~~~~~~l~~~~-~------------d~~v~vwd~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l 222 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVG-D------------DGSVVFYQGPPFKFSASDRTHHKQ----------GSFVRDVEFSPDSGEFV 222 (615)
T ss_dssp EEECSSSSCEEEEEE-T------------TTEEEEEETTTBEEEEEECSSSCT----------TCCEEEEEECSTTCCEE
T ss_pred EEECCCCCcEEEEEe-C------------CCcEEEEeCCCcceeeeecccCCC----------CceEEEEEECCCCCCEE
Confidence 999999995 44444 2 23899999886554 333322110 014567999999 8866
Q ss_pred eEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEE-e---ecccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EIL-H---KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l-~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
+.. +..+.|.+|++ ..++. ..+ . .+...+..+.|+ |++.|+....++ .|.++++
T Consensus 223 ~~~-------------~~dg~i~vwd~---~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~----~i~~wd~ 281 (615)
T 1pgu_A 223 ITV-------------GSDRKISCFDG---KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA----TIRVWDV 281 (615)
T ss_dssp EEE-------------ETTCCEEEEET---TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS----EEEEEET
T ss_pred EEE-------------eCCCeEEEEEC---CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC----cEEEEEC
Confidence 655 33557899996 44443 444 3 556677889999 999888876443 3566666
Q ss_pred CCC
Q 002194 489 GSK 491 (954)
Q Consensus 489 ~~~ 491 (954)
.++
T Consensus 282 ~~~ 284 (615)
T 1pgu_A 282 TTS 284 (615)
T ss_dssp TTT
T ss_pred CCC
Confidence 654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-12 Score=140.70 Aligned_cols=267 Identities=6% Similarity=-0.014 Sum_probs=167.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++|+....+ +.|++|++...........+.. ...
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d---------------------------------~~v~iw~~~~~~~~~~~~~~~~--~~~ 57 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWD---------------------------------GSLTVYKFDIQAKNVDLLQSLR--YKH 57 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETT---------------------------------SEEEEEEEETTTTEEEEEEEEE--CSS
T ss_pred cEEEEEEcCCCCEEEEEcCC---------------------------------CeEEEEEeCCCCccccceeeee--cCC
Confidence 46678999999999988775 5799999864110001333333 334
Q ss_pred cccceeecCCCC-eEEEEEeeccccCCCCceEEEEEEC-CCCceeeccc--CCCccccccccceeEecCCeEEEEEecCC
Q 002194 190 KLNFVTWSQDGK-HLAFSIRIDAEDSSSSKLRVWVADV-DTGKARPLFQ--SPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (954)
Q Consensus 190 ~~~~~~wSPDG~-~iaf~~~~~~~~~~~~~~~l~~~d~-~~g~~~~lt~--~~~~~~~~~~~~~~wspDG~~l~~~~~~~ 265 (954)
.+..+.|+|||+ .|+.... ...|+++++ ++++...+.. .... +..+.|+| ++.|+...
T Consensus 58 ~v~~~~~~~~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~~~~-----v~~l~~~~-~~~l~s~~--- 119 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGTV---------QGEILKVDLIGSPSFQALTNNEANLG-----ICRICKYG-DDKLIAAS--- 119 (342)
T ss_dssp CEEEEEEEESSSEEEEEEET---------TSCEEEECSSSSSSEEECBSCCCCSC-----EEEEEEET-TTEEEEEE---
T ss_pred ceEEEEECCCCCcEEEEEcC---------CCeEEEEEeccCCceEeccccCCCCc-----eEEEEeCC-CCEEEEEc---
Confidence 788999999999 8887542 457888898 8888776654 3332 77899999 88887661
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C---------Cce-eEcCCCccc
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D---------GTV-KEIGPPAVY 334 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~---------G~~-~~l~~~~~~ 334 (954)
....|.++++ + ++. ..+.....+
T Consensus 120 ----------------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 153 (342)
T 1yfq_A 120 ----------------------------------------------WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKI 153 (342)
T ss_dssp ----------------------------------------------TTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCE
T ss_pred ----------------------------------------------CCCeEEEEcccccccccccccCCeeeEEeeCCce
Confidence 1233556665 4 432 223323677
Q ss_pred cccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC-ce--EEEeccCCCcccCCccccccccCccceeecc-CC
Q 002194 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRS-DK 410 (954)
Q Consensus 335 ~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~wsp-Dg 410 (954)
..++|+||+ ++..+.+ +.+.+||+.. .. ...... .....+..++|+| ||
T Consensus 154 ~~~~~~~~~--l~~~~~d-------------~~i~i~d~~~~~~~~~~~~~~------------~~~~~i~~i~~~~~~~ 206 (342)
T 1yfq_A 154 FTMDTNSSR--LIVGMNN-------------SQVQWFRLPLCEDDNGTIEES------------GLKYQIRDVALLPKEQ 206 (342)
T ss_dssp EEEEECSSE--EEEEEST-------------TEEEEEESSCCTTCCCEEEEC------------SCSSCEEEEEECSGGG
T ss_pred EEEEecCCc--EEEEeCC-------------CeEEEEECCccccccceeeec------------CCCCceeEEEECCCCC
Confidence 889999998 5555522 3899999986 32 111111 1113456789999 99
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCC----CCCceEEeeccc---------ccCceeeccCCceEEEEEecc
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ----GEGPEILHKLDL---------RYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----g~~~~~l~~~~~---------~~~~~~~spDg~~l~~~~~~~ 477 (954)
+.++.. +..+.+.+|+++... ......+..+.. .+..++|+|||+.|+....++
T Consensus 207 ~~l~~~-------------~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 273 (342)
T 1yfq_A 207 EGYACS-------------SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG 273 (342)
T ss_dssp CEEEEE-------------ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred CEEEEE-------------ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc
Confidence 876665 334567777752110 133344444432 677899999999988776443
Q ss_pred ccceEEEEEcCCCCCCCcEEEecCC-CCCccCCCCCCCeeeccCCcEEEEEEe
Q 002194 478 TRRTRTWVISPGSKDVAPRILFDRS-SEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 478 ~~~~~l~~~d~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (954)
.|+++|+.++ +........ ...+.. ++ |||++|+....
T Consensus 274 ----~i~vwd~~~~--~~~~~~~~~h~~~v~~------~~--~~~~~l~s~s~ 312 (342)
T 1yfq_A 274 ----IISCWNLQTR--KKIKNFAKFNEDSVVK------IA--CSDNILCLATS 312 (342)
T ss_dssp ----CEEEEETTTT--EEEEECCCCSSSEEEE------EE--ECSSEEEEEEE
T ss_pred ----eEEEEcCccH--hHhhhhhcccCCCceE------ec--CCCCeEEEEec
Confidence 3666677664 222222222 222222 33 99999988874
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=146.45 Aligned_cols=209 Identities=8% Similarity=-0.071 Sum_probs=133.9
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (954)
..+|.+++...+-+ .|+||++||++.... .|.. .+..|+ ++|.|++ .+..|
T Consensus 14 ~~~g~~l~~~~~g~----------~~~vv~lHG~~~~~~-----------~~~~----~~~~l~-~~~~vi~---~D~~G 64 (297)
T 2qvb_A 14 EIAGKRMAYIDEGK----------GDAIVFQHGNPTSSY-----------LWRN----IMPHLE-GLGRLVA---CDLIG 64 (297)
T ss_dssp EETTEEEEEEEESS----------SSEEEEECCTTCCGG-----------GGTT----TGGGGT-TSSEEEE---ECCTT
T ss_pred EECCEEEEEEecCC----------CCeEEEECCCCchHH-----------HHHH----HHHHHh-hcCeEEE---EcCCC
Confidence 34788887665521 378999999743211 1111 122333 4599999 56667
Q ss_pred CCCcccch------hhHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC
Q 002194 726 EGDEEAND------RFVEQLVACAEAAVEEVVRRGVAHP-SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (954)
Q Consensus 726 ~G~~~~~~------~~~~~~~~D~~~av~~l~~~~~~d~-~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (954)
+|.+.... .......+|+.++++.+ +. +++.++|||+||.+++.++.++|++++++|+++|......
T Consensus 65 ~G~S~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~ 138 (297)
T 2qvb_A 65 MGASDKLSPSGPDRYSYGEQRDFLFALWDAL------DLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVTPMT 138 (297)
T ss_dssp STTSCCCSSCSTTSSCHHHHHHHHHHHHHHT------TCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCSCBC
T ss_pred CCCCCCCCCccccCcCHHHHHHHHHHHHHHc------CCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccCCcc
Confidence 77775432 23456667777766654 33 6899999999999999999999999999999998653110
Q ss_pred CC-CC--C---------c----------------------cccc---------------hhhhcH-HHHHhc--------
Q 002194 799 TP-FG--F---------Q----------------------NEDR---------------TLWEAT-STYVEM-------- 820 (954)
Q Consensus 799 ~~-~~--~---------~----------------------~~~~---------------~~~~~~-~~~~~~-------- 820 (954)
.. .. . . .... ...... ..+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (297)
T 2qvb_A 139 WADWPPAVRGVFQGFRSPQGEPMALEHNIFVERVLPGAILRQLSDEEMNHYRRPFVNGGEDRRPTLSWPRNLPIDGEPAE 218 (297)
T ss_dssp GGGSCGGGHHHHHHHTSTTHHHHHHTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHHSCBTTBSHH
T ss_pred CCCCChHHHHHHHHHhcccchhhhccccHHHHHHHhccccccCCHHHHHHHHHHhcCcccchhhHHHHHHhccccCCchh
Confidence 00 00 0 0 0000 000000 000000
Q ss_pred ------CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 821 ------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 821 ------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
+....+.++++|+|+++|++|..+| .+.++++.+.+ .. +++++ ++||... .++...+.+.|.+||
T Consensus 219 ~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~----~~-~~~~~-~~gH~~~-~~~p~~~~~~i~~fl 289 (297)
T 2qvb_A 219 VVALVNEYRSWLEETDMPKLFINAEPGAIIT--GRIRDYVRSWP----NQ-TEITV-PGVHFVQ-EDSPEEIGAAIAQFV 289 (297)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHTSS----SE-EEEEE-EESSCGG-GTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhcccccccEEEEecCCCCcCC--HHHHHHHHHHc----CC-eEEEe-cCccchh-hhCHHHHHHHHHHHH
Confidence 1123445688999999999999998 77776665543 23 78888 9999864 566788899999999
Q ss_pred HHhc
Q 002194 895 QKYC 898 (954)
Q Consensus 895 ~~~l 898 (954)
++..
T Consensus 290 ~~~~ 293 (297)
T 2qvb_A 290 RRLR 293 (297)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-12 Score=143.00 Aligned_cols=260 Identities=12% Similarity=0.099 Sum_probs=153.1
Q ss_pred ceEEEEccCCCCCCceeeeecCC---CCCcccceeecCC----CCeEEEEEeeccccCCCCceEEEEEECCCCceeeccc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFP---DGAKLNFVTWSQD----GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQ 236 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~---~~~~~~~~~wSPD----G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~ 236 (954)
.|.+|++... ...+.+..+. ....+....|+|| |+.|+... ....|.++++++++......
T Consensus 45 ~v~vw~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~---------~dg~i~v~d~~~~~~~~~~~ 112 (366)
T 3k26_A 45 RVTLYECHSQ---GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG---------SRGIIRIINPITMQCIKHYV 112 (366)
T ss_dssp EEEEEEECGG---GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE---------TTCEEEEECTTTCCEEEEEE
T ss_pred EEEEEEcCCC---cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec---------CCCEEEEEEchhceEeeeec
Confidence 6889998642 2223333221 2236888999999 55666644 25578888988877655443
Q ss_pred CCCccccccccceeEec-CCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccce
Q 002194 237 SPDIYLNAIFDNFVWVN-NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQ 315 (954)
Q Consensus 237 ~~~~~~~~~~~~~~wsp-DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~ 315 (954)
..... +..+.|+| |++.|+... ....
T Consensus 113 ~~~~~----i~~~~~~~~~~~~l~s~~-------------------------------------------------~dg~ 139 (366)
T 3k26_A 113 GHGNA----INELKFHPRDPNLLLSVS-------------------------------------------------KDHA 139 (366)
T ss_dssp SCCSC----EEEEEECSSCTTEEEEEE-------------------------------------------------TTSC
T ss_pred CCCCc----EEEEEECCCCCCEEEEEe-------------------------------------------------CCCe
Confidence 23222 77899999 898888661 1234
Q ss_pred EEEEEe-CCceeEc----CCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEE-ecc----C
Q 002194 316 LVLVSL-DGTVKEI----GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCD----L 384 (954)
Q Consensus 316 l~~~~~-~G~~~~l----~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~-l~~----~ 384 (954)
|.++++ +++.... ... ..+..++|+|||++|+..+.+ +.+.+||+..++... +.. .
T Consensus 140 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~~~~ 206 (366)
T 3k26_A 140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD-------------HSLKLWRINSKRMMNAIKESYDYN 206 (366)
T ss_dssp EEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEESCSHHHHHHHHHHHTCC
T ss_pred EEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC-------------CCEEEEECCCCccccccceeEEec
Confidence 778888 6654333 233 778899999999999888743 389999998643211 110 0
Q ss_pred CCcccCC---------c--cccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCC------
Q 002194 385 PLAEDIP---------I--AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG------ 447 (954)
Q Consensus 385 ~~~~~~p---------~--~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~------ 447 (954)
+.....+ . ........+..++|+ |+.++.. +..+.|.+|++ ..+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~-------------~~d~~i~~wd~--~~~~~~~~~~~ 269 (366)
T 3k26_A 207 PNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK-------------SCENAIVCWKP--GKMEDDIDKIK 269 (366)
T ss_dssp GGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE-------------CSSSEEEEEEE--SSTTCCGGGCC
T ss_pred CCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE-------------ecCCEEEEEeC--CCccccccccc
Confidence 0000000 0 011123445667887 4444333 34557888886 22211
Q ss_pred --------ceEEeecccccCceeeccC--CceEEEEEeccccceEEEEEcCCCCCCC--cEEEecCC--CCCccCCCCCC
Q 002194 448 --------PEILHKLDLRYGGISWCDD--SLALVYESWYKTRRTRTWVISPGSKDVA--PRILFDRS--SEDVYSDPGSP 513 (954)
Q Consensus 448 --------~~~l~~~~~~~~~~~~spD--g~~l~~~~~~~~~~~~l~~~d~~~~~~~--~~~l~~~~--~~~~~~~~~~~ 513 (954)
...+..+...+..++|+|| |+.|+....++ .|+++++.++... .......+ ...+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~----- 340 (366)
T 3k26_A 270 PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG----KLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQ----- 340 (366)
T ss_dssp TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS----CEEEEECCSSSGGGCEEEEECCTTCCSCEEE-----
T ss_pred cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCC----cEEEEECCCCCCccccceEEcccccCCceEE-----
Confidence 2233445556788999999 99888775443 3555555554211 11122222 223333
Q ss_pred CeeeccCCcEEEEEE
Q 002194 514 MMRRTSTGTYVIAKI 528 (954)
Q Consensus 514 ~~~~spdG~~l~~~~ 528 (954)
+.|+|||++|+...
T Consensus 341 -~~~s~~~~~l~s~~ 354 (366)
T 3k26_A 341 -TSFSRDSSILIAVC 354 (366)
T ss_dssp -EEECTTSSEEEEEE
T ss_pred -EEeCCCCCeEEEEe
Confidence 78999999988776
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-13 Score=145.92 Aligned_cols=210 Identities=12% Similarity=0.041 Sum_probs=126.4
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (954)
..+|.+++....- + .|.||++||...... .|. ..+..|++ ||.|++ .+..|
T Consensus 19 ~~~g~~l~~~~~g-------~---~~~vv~lHG~~~~~~-----------~~~----~~~~~l~~-~~~v~~---~D~~G 69 (306)
T 3r40_A 19 NTSSGRIFARVGG-------D---GPPLLLLHGFPQTHV-----------MWH----RVAPKLAE-RFKVIV---ADLPG 69 (306)
T ss_dssp CCTTCCEEEEEEE-------C---SSEEEEECCTTCCGG-----------GGG----GTHHHHHT-TSEEEE---ECCTT
T ss_pred EeCCEEEEEEEcC-------C---CCeEEEECCCCCCHH-----------HHH----HHHHHhcc-CCeEEE---eCCCC
Confidence 4578888766542 1 478999999742211 121 23445555 999999 66678
Q ss_pred CCCcccch-------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC-
Q 002194 726 EGDEEAND-------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT- 797 (954)
Q Consensus 726 ~G~~~~~~-------~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~- 797 (954)
+|.+.... .......+|+.+.++.+ +.+++.++|||+||.+++.++.++|++++++|++++.....
T Consensus 70 ~G~S~~~~~~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~ 143 (306)
T 3r40_A 70 YGWSDMPESDEQHTPYTKRAMAKQLIEAMEQL------GHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPTYEY 143 (306)
T ss_dssp STTSCCCCCCTTCGGGSHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCHHHH
T ss_pred CCCCCCCCCCcccCCCCHHHHHHHHHHHHHHh------CCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCCCCccc
Confidence 88775432 22455566666665553 34589999999999999999999999999999998642100
Q ss_pred --------------------CC---------------------------CCCCccccch----hhhcH-------HHHHh
Q 002194 798 --------------------LT---------------------------PFGFQNEDRT----LWEAT-------STYVE 819 (954)
Q Consensus 798 --------------------~~---------------------------~~~~~~~~~~----~~~~~-------~~~~~ 819 (954)
.. ...+...... .+..+ ..+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (306)
T 3r40_A 144 WQRMNRAYALKIYHWSFLAQPAPLPENLLGGDPDFYVKAKLASWTRAGDLSAFDPRAVEHYRIAFADPMRRHVMCEDYRA 223 (306)
T ss_dssp HHHCSHHHHHHSTHHHHHTSCTTHHHHHHTSCHHHHHHHHHHHTSSSSSSTTSCHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHhhcccchHHHHHcCCHHHHHHHHhhcccCCCccccCCHHHHHHHHHHHccCCCcchhhHHHHh
Confidence 00 0000000000 00000 00000
Q ss_pred c---------CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHH
Q 002194 820 M---------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWET 890 (954)
Q Consensus 820 ~---------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i 890 (954)
. .....+.++++|+|+++|++|..+| .....+.++.+. .+++++++ ++||.. ..++.+.+.+.|
T Consensus 224 ~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~--~~~~~~~~~~~~---~~~~~~~~-~~gH~~-~~e~p~~~~~~i 296 (306)
T 3r40_A 224 GAYADFEHDKIDVEAGNKIPVPMLALWGASGIAQS--AATPLDVWRKWA---SDVQGAPI-ESGHFL-PEEAPDQTAEAL 296 (306)
T ss_dssp HHTHHHHHHHHHHHHTCCBCSCEEEEEETTCC--------CHHHHHHHB---SSEEEEEE-SSCSCH-HHHSHHHHHHHH
T ss_pred cccccchhhhhhhhhccCCCcceEEEEecCCcccC--chhHHHHHHhhc---CCCeEEEe-cCCcCc-hhhChHHHHHHH
Confidence 0 0001347889999999999999987 566555555443 34677777 679976 356677888889
Q ss_pred HHHHHHh
Q 002194 891 DRWLQKY 897 (954)
Q Consensus 891 ~~fl~~~ 897 (954)
.+||++.
T Consensus 297 ~~fl~~~ 303 (306)
T 3r40_A 297 VRFFSAA 303 (306)
T ss_dssp HHHHHC-
T ss_pred HHHHHhc
Confidence 9998764
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.4e-13 Score=141.03 Aligned_cols=199 Identities=9% Similarity=0.009 Sum_probs=126.5
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~a 746 (954)
.|.||++||.+... ..|. .....|+++||.|++ .|.+|+|.+.... .......+|+.+.
T Consensus 4 ~~~vvllHG~~~~~-----------~~w~----~~~~~L~~~g~rVia---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~ 65 (273)
T 1xkl_A 4 GKHFVLVHGACHGG-----------WSWY----KLKPLLEAAGHKVTA---LDLAASGTDLRKIEELRTLYDYTLPLMEL 65 (273)
T ss_dssp CCEEEEECCTTCCG-----------GGGT----THHHHHHHTTCEEEE---CCCTTSTTCCCCGGGCCSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCc-----------chHH----HHHHHHHhCCCEEEE---ecCCCCCCCccCcccccCHHHHHHHHHHH
Confidence 36799999964211 1121 246677889999999 7778888885421 2345556666555
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC-CC---------------CC------Cc
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL-TP---------------FG------FQ 804 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~-~~---------------~~------~~ 804 (954)
++.+ +. .+++.|+||||||.+++.++.++|++++++|++++...... .. +. +.
T Consensus 66 l~~l---~~--~~~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (273)
T 1xkl_A 66 MESL---SA--DEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYG 140 (273)
T ss_dssp HHTS---CS--SSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECS
T ss_pred HHHh---cc--CCCEEEEecCHHHHHHHHHHHhChHhheEEEEEeccCCCCCCcHHHHHHHhhccCChhhHHHHHHhhcc
Confidence 4443 21 25899999999999999999999999999999886421100 00 00 00
Q ss_pred ----c-c---cch-h-----hh--cH--HHHH-h-cCcc----------ccc---CCCCCCEEEEEeCCCCCCCCchHHH
Q 002194 805 ----N-E---DRT-L-----WE--AT--STYV-E-MSPF----------MSA---NKLKKPILLVHGEEDNNSGTLTMQS 851 (954)
Q Consensus 805 ----~-~---~~~-~-----~~--~~--~~~~-~-~sp~----------~~~---~~~~~P~Lii~G~~D~~v~~~~~~~ 851 (954)
. . ... . +. .. ..+. . ..+. ... ...++|+|+|+|++|..+| +..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p--~~~~ 218 (273)
T 1xkl_A 141 SPEEPLTSMFFGPKFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIP--EEFQ 218 (273)
T ss_dssp CTTSCCEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTT--HHHH
T ss_pred CCCCCccccccCHHHHHHHhhccCCHHHHHHHHHhcCCCchhhhhhhcccccchhhhCCCCeEEEEeCCccCCC--HHHH
Confidence 0 0 000 0 00 00 0000 0 0010 000 1135799999999999998 8888
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
+++.+.+.. .+++++|++||... .+..+.+.+.|.+|+.+..
T Consensus 219 ~~~~~~~p~----~~~~~i~~aGH~~~-~e~P~~~~~~i~~fl~~~~ 260 (273)
T 1xkl_A 219 RWQIDNIGV----TEAIEIKGADHMAM-LCEPQKLCASLLEIAHKYN 260 (273)
T ss_dssp HHHHHHHCC----SEEEEETTCCSCHH-HHSHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCC----CeEEEeCCCCCCch-hcCHHHHHHHHHHHHHHhc
Confidence 888776643 48889999999863 5667888999999998754
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-12 Score=139.19 Aligned_cols=216 Identities=18% Similarity=0.201 Sum_probs=132.4
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (954)
+...+...+|.+++...+-+++ +.|.||++||.+... ..| ...+..| ++||.|++
T Consensus 6 ~~~~~~~~~g~~l~~~~~g~~~-------~~~~vvllHG~~~~~-----------~~~----~~~~~~L-~~~~~vi~-- 60 (285)
T 3bwx_A 6 EDRYWTSSDGLRLHFRAYEGDI-------SRPPVLCLPGLTRNA-----------RDF----EDLATRL-AGDWRVLC-- 60 (285)
T ss_dssp EEEEEECTTSCEEEEEEECBCT-------TSCCEEEECCTTCCG-----------GGG----HHHHHHH-BBTBCEEE--
T ss_pred ccCeeecCCCceEEEEEcCCCC-------CCCcEEEECCCCcch-----------hhH----HHHHHHh-hcCCEEEe--
Confidence 4556777899999988775432 136688999964211 011 1233344 45999999
Q ss_pred CCCCCCCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC--
Q 002194 720 TTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA-- 793 (954)
Q Consensus 720 ~~~~~G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~-- 793 (954)
.|.+|+|.+.... .......+|+.+.++.+ ..+++.++||||||.+|+.+|.++|++++++|+.++.
T Consensus 61 -~Dl~G~G~S~~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~ 133 (285)
T 3bwx_A 61 -PEMRGRGDSDYAKDPMTYQPMQYLQDLEALLAQE------GIERFVAIGTSLGGLLTMLLAAANPARIAAAVLNDVGPE 133 (285)
T ss_dssp -ECCTTBTTSCCCSSGGGCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSS
T ss_pred -ecCCCCCCCCCCCCccccCHHHHHHHHHHHHHhc------CCCceEEEEeCHHHHHHHHHHHhCchheeEEEEecCCcc
Confidence 6677888875421 23456677887777765 2358999999999999999999999999999986531
Q ss_pred CCCC-----------CC---CC-------------CCccccchhhhcH-H-HHHh---------cCc-----cc------
Q 002194 794 YNRT-----------LT---PF-------------GFQNEDRTLWEAT-S-TYVE---------MSP-----FM------ 824 (954)
Q Consensus 794 ~~~~-----------~~---~~-------------~~~~~~~~~~~~~-~-~~~~---------~sp-----~~------ 824 (954)
.... .. .+ .+.......|... . .+.. +++ +.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (285)
T 3bwx_A 134 VSPEGLERIRGYVGQGRNFETWMHAARALQESSGDVYPDWDITQWLRYAKRIMVLGSSGRIAFDYDMKIAEPFEAPVGAT 213 (285)
T ss_dssp CCHHHHHHHHHHTTCCCEESSHHHHHHHHHHHHTTTSTTCCHHHHHHHHHHHEEECTTSCEEESBCGGGGCCTTSCTTCC
T ss_pred cCcchhHHHHHHhcCCcccccHHHHHHHHHHhhhhcccccChHHHHHHHHhhheeCCCCceeeccCHHHHHHHhhhhhcc
Confidence 1100 00 00 0000000001000 0 0000 000 00
Q ss_pred -------ccCCC-CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 825 -------SANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 825 -------~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.+.++ ++|+|+++|++|..++ +..++++.+ . .++++++++++||... .+..+. +..|.+||.+
T Consensus 214 ~~~~~~~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~----~-~~~~~~~i~~~gH~~~-~e~p~~-~~~i~~fl~~ 284 (285)
T 3bwx_A 214 PQVDMWPLFDALATRPLLVLRGETSDILS--AQTAAKMAS----R-PGVELVTLPRIGHAPT-LDEPES-IAAIGRLLER 284 (285)
T ss_dssp CSSCCHHHHHHHTTSCEEEEEETTCSSSC--HHHHHHHHT----S-TTEEEEEETTCCSCCC-SCSHHH-HHHHHHHHTT
T ss_pred ccchhhHHHHHccCCCeEEEEeCCCCccC--HHHHHHHHh----C-CCcEEEEeCCCCccch-hhCchH-HHHHHHHHHh
Confidence 01223 7899999999999988 766655543 3 4589999999999864 344444 4678888753
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.1e-13 Score=142.63 Aligned_cols=244 Identities=14% Similarity=0.156 Sum_probs=146.4
Q ss_pred ceEEEEEEcC-CCeEEEEEEEcCCCCCCC---CCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCc
Q 002194 638 QKELIKYQRK-DGVQLSATLYLPPGYDPS---KDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (954)
Q Consensus 638 ~~~~~~~~~~-~g~~l~~~l~~P~~~~~~---~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (954)
....+++.+. -|.++...+|+|++|... +++++|+|.++||..... ..|...+ ...+.+...|.
T Consensus 13 ~~~~~~~~S~~l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~~-----------~~w~~~~-~~~~~~~~~~~ 80 (299)
T 4fol_A 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTP-----------DNASEKA-FWQFQADKYGF 80 (299)
T ss_dssp EEEEEEEECTTTSSEEEEEEEECGGGGCC------CBCEEEEECCTTCCH-----------HHHHHHS-CHHHHHHHHTC
T ss_pred EEEEEEEECcccCCceEEEEEcCCCCCccccccCCCcCEEEEECCCCCCh-----------HHHHHhc-hHhHHHHHcCc
Confidence 4556677654 578899999999988532 234699999999963110 1111111 12334456788
Q ss_pred EEEEcCCCCC----C---------CCCCccc----------chhhHHHHHHHHHHHHHHHHH----cCCCCCCcEEEEee
Q 002194 714 AILGGPTTPI----I---------GEGDEEA----------NDRFVEQLVACAEAAVEEVVR----RGVAHPSKIAVGGH 766 (954)
Q Consensus 714 ~V~~~~~~~~----~---------G~G~~~~----------~~~~~~~~~~D~~~av~~l~~----~~~~d~~ri~l~G~ 766 (954)
+++.++.... . |.+..+. ...+....++|+...++.-.. +...+.++.+|+|+
T Consensus 81 ~~v~p~~~p~~~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~ 160 (299)
T 4fol_A 81 AIVFPDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGI 160 (299)
T ss_dssp EEEEECSSCCSTTSCCCTTCCSSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEB
T ss_pred hhhccCCCcceeecCCCcccccccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEec
Confidence 8888443110 0 1111110 123345566666666553321 11234578999999
Q ss_pred ChHHHHHHHHHHhC--CCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCC---C-CCCEEEEEeCC
Q 002194 767 SYGAFMTANLLAHA--PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK---L-KKPILLVHGEE 840 (954)
Q Consensus 767 S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~---~-~~P~Lii~G~~ 840 (954)
||||+-|+.++.++ |++++++.+.+|+.+....++...............+..+++...+.+ . ..++||-+|+.
T Consensus 161 SMGG~gAl~~al~~~~~~~~~~~~s~s~~~~p~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~i~id~G~~ 240 (299)
T 4fol_A 161 SMGGYGAICGYLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDS 240 (299)
T ss_dssp THHHHHHHHHHHHTGGGTCCSEEEEESCCCCGGGSHHHHHHHHHHTC-----CGGGCHHHHGGGSCCCTTCCEEEEEETT
T ss_pred CchHHHHHHHHHhCCCCCceEEEEecccccCcccccccccccccccccchhhhhhcCHHHHHHhcccCCCCceEEEecCC
Confidence 99999999999985 678999999999876433322211111111222333444555443333 2 35799999999
Q ss_pred CCCCCCchHH--HHHHHHHHHhCCCc--EEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 841 DNNSGTLTMQ--SDRFFNALKGHGAL--CRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 841 D~~v~~~~~~--~~~~~~~l~~~g~~--~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
|.... .+ ...+.++++.+|.+ +++...||.+|.+.. ....+++.+.|..++|+
T Consensus 241 D~f~~---~~l~~~~f~~a~~~~g~~~~~~~r~~~GydHsy~f---~~~fi~dhl~fha~~Lg 297 (299)
T 4fol_A 241 DPFLE---EHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYYF---VSTFVPEHAEFHARNLG 297 (299)
T ss_dssp CTTHH---HHTCTHHHHHHHTTSTTTTCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHTT
T ss_pred Ccchh---hhcCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH---HHHHHHHHHHHHHHhcC
Confidence 98742 22 36788999988865 788899998998643 23456667888888874
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.48 E-value=6.4e-13 Score=143.90 Aligned_cols=209 Identities=13% Similarity=0.053 Sum_probs=133.8
Q ss_pred eEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCc
Q 002194 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE 729 (954)
Q Consensus 650 ~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~ 729 (954)
.+++....-|++ +.|.||++||.+.... .|. .....|+++||.|++ .|.+|+|.+
T Consensus 34 ~~l~y~~~G~~~-------~g~~vvllHG~~~~~~-----------~w~----~~~~~L~~~g~rvia---~Dl~G~G~S 88 (310)
T 1b6g_A 34 LRAHYLDEGNSD-------AEDVFLCLHGEPTWSY-----------LYR----KMIPVFAESGARVIA---PDFFGFGKS 88 (310)
T ss_dssp CEEEEEEEECTT-------CSCEEEECCCTTCCGG-----------GGT----TTHHHHHHTTCEEEE---ECCTTSTTS
T ss_pred eEEEEEEeCCCC-------CCCEEEEECCCCCchh-----------hHH----HHHHHHHhCCCeEEE---eCCCCCCCC
Confidence 888776654421 0367999999752211 121 235578888999999 777889988
Q ss_pred ccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC--CC------
Q 002194 730 EAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN--RT------ 797 (954)
Q Consensus 730 ~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~--~~------ 797 (954)
..+. .......+|+.+.++.| +.+++.|+||||||.+|+.+|.++|++++++|++++... ..
T Consensus 89 ~~~~~~~~y~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~~~~~~~~~~~~~ 162 (310)
T 1b6g_A 89 DKPVDEEDYTFEFHRNFLLALIERL------DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFS 162 (310)
T ss_dssp CEESCGGGCCHHHHHHHHHHHHHHH------TCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHH
T ss_pred CCCCCcCCcCHHHHHHHHHHHHHHc------CCCCEEEEEcChHHHHHHHHHHhChHhheEEEEeccccccCCccccchh
Confidence 6542 23566677877777766 235899999999999999999999999999999987431 10
Q ss_pred ----CCCCCC---------cccc----------chhh-hcHHHHH----------------h--cC-----------ccc
Q 002194 798 ----LTPFGF---------QNED----------RTLW-EATSTYV----------------E--MS-----------PFM 824 (954)
Q Consensus 798 ----~~~~~~---------~~~~----------~~~~-~~~~~~~----------------~--~s-----------p~~ 824 (954)
.....+ .... ...- +..+.|. . .. ...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (310)
T 1b6g_A 163 AFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQAXIDISTEAIS 242 (310)
T ss_dssp HTTTSSTTTHHHHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred hhhhccchHHHHHHHHhccCchhhhhhHHhhcCCCCCHHHHHHHhcccCCccchHHHHHHHHHhcccccchhhhhhhHhh
Confidence 000000 0000 0000 0000000 0 00 012
Q ss_pred ccC-CCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 825 SAN-KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 825 ~~~-~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.+. ++++|+|+++|++|..+| ..+.++.+.+... ....++++++||... . ..+.+.+.|.+||.+
T Consensus 243 ~l~~~i~~P~Lvi~G~~D~~~~---~~~~~~~~~ip~~--~~~~i~~~~~GH~~~-~-~p~~~~~~i~~Fl~~ 308 (310)
T 1b6g_A 243 FWQNDWNGQTFMAIGMKDKLLG---PDVMYPMKALING--CPEPLEIADAGHFVQ-E-FGEQVAREALKHFAE 308 (310)
T ss_dssp HHHHTCCSEEEEEEETTCSSSS---HHHHHHHHHHSTT--CCCCEEETTCCSCGG-G-GHHHHHHHHHHHHHH
T ss_pred hhhccccCceEEEeccCcchhh---hHHHHHHHhcccc--cceeeecCCcccchh-h-ChHHHHHHHHHHHhc
Confidence 345 899999999999999864 5666776666433 223333499999875 4 788899999999975
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-12 Score=137.80 Aligned_cols=213 Identities=14% Similarity=0.135 Sum_probs=129.9
Q ss_pred eEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCC--------C
Q 002194 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT--------T 721 (954)
Q Consensus 650 ~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~--------~ 721 (954)
..+.+.||+|.+- ++|.|+||.+||+. + .+.+||+|+..++ .
T Consensus 90 ~~~~~~i~lP~~~----~~p~Pvii~i~~~~----------------~----------~~~~G~a~~~~~~~~v~~~~~~ 139 (375)
T 3pic_A 90 ISFTVTITYPSSG----TAPYPAIIGYGGGS----------------L----------PAPAGVAMINFNNDNIAAQVNT 139 (375)
T ss_dssp EEEEEEEECCSSS----CSSEEEEEEETTCS----------------S----------CCCTTCEEEEECHHHHSCCSSG
T ss_pred eEEEEEEECCCCC----CCCccEEEEECCCc----------------c----------ccCCCeEEEEecccccccccCC
Confidence 4688999999752 35799999999841 1 0357899988443 2
Q ss_pred CCCCCCCcccc-----h--hhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEecc
Q 002194 722 PIIGEGDEEAN-----D--RFVEQLVACAEAAVEEVVRRG--VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (954)
Q Consensus 722 ~~~G~G~~~~~-----~--~~~~~~~~D~~~av~~l~~~~--~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (954)
++.|+|. +.. . ........|+.++++||..++ .||++||+|+|||+||.+|+++++.+ ++|+++|+.++
T Consensus 140 gs~g~g~-f~~ly~~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D-~Ri~~~v~~~~ 217 (375)
T 3pic_A 140 GSRGQGK-FYDLYGSSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFE-KRIVLTLPQES 217 (375)
T ss_dssp GGTTCSH-HHHHHCTTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHC-TTEEEEEEESC
T ss_pred CCcccee-cccccCCccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcC-CceEEEEeccC
Confidence 2334442 110 0 112334579999999999998 99999999999999999999999999 68999999886
Q ss_pred CCCCCCC--------CCCCccc------cchhhhcHHHHHhcC------ccc---ccCC-CCCCEEEEEeCCCCCCCCch
Q 002194 793 AYNRTLT--------PFGFQNE------DRTLWEATSTYVEMS------PFM---SANK-LKKPILLVHGEEDNNSGTLT 848 (954)
Q Consensus 793 ~~~~~~~--------~~~~~~~------~~~~~~~~~~~~~~s------p~~---~~~~-~~~P~Lii~G~~D~~v~~~~ 848 (954)
..+-... .++.... ....|-.+ .|..+. |++ .++- ...|+||+.| .|..++ +
T Consensus 218 g~~G~~~~R~~~~~~~~Ge~v~~~~~~~~e~~Wf~~-~~~~y~~~~~~lP~D~h~L~ALiAPRPllv~~g-~D~w~~--~ 293 (375)
T 3pic_A 218 GAGGSACWRISDYLKSQGANIQTASEIIGEDPWFST-TFNSYVNQVPVLPFDHHSLAALIAPRGLFVIDN-NIDWLG--P 293 (375)
T ss_dssp CTTTTSCHHHHHHHHHTTCCCCCHHHHTTTCSCSCG-GGGGTTTCGGGSSCCHHHHHHTSTTSEEEEECC-CCGGGC--H
T ss_pred CCCchhhhhhhhhhcccCccccccccccCccccccc-chhhhcccccccCcCHHHHHHHhCCceEEEecC-CCcccC--c
Confidence 4331110 0000000 00112111 111111 111 1111 2579999999 888877 6
Q ss_pred HHHHHHHHHH----HhCC--CcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcccCC
Q 002194 849 MQSDRFFNAL----KGHG--ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 849 ~~~~~~~~~l----~~~g--~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
......+.++ +..| .++.+.+..+.+|.....+ ..+.+.+||++||++..
T Consensus 294 ~g~~~~~~~a~~VY~~lG~~d~~~~~~~ggH~Hc~fp~~----~~~~~~~F~~k~L~~~~ 349 (375)
T 3pic_A 294 QSCFGCMTAAHMAWQALGVSDHMGYSQIGAHAHCAFPSN----QQSQLTAFVQKFLLGQS 349 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGEEEECCSCCSTTCCCGG----GHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHcCCccceEEEeeCCCccccCCHH----HHHHHHHHHHHHhCCCC
Confidence 5544333333 3344 3567654334455322222 24678999999998743
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.9e-12 Score=142.95 Aligned_cols=305 Identities=10% Similarity=0.064 Sum_probs=172.0
Q ss_pred CcccceeecC-CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEec-CCeEEEEEecCCC
Q 002194 189 AKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN-NSTLLVCTIPLLR 266 (954)
Q Consensus 189 ~~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp-DG~~l~~~~~~~~ 266 (954)
..+..++|+| +++.||... ....|.++|+++++...+....+ ....+..++|+| |+++|+...
T Consensus 120 ~~V~~l~~~P~~~~~lasGs---------~dg~i~lWd~~~~~~~~~~~~~g--H~~~V~~l~f~p~~~~~l~s~s---- 184 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGS---------KGGDIMLWNFGIKDKPTFIKGIG--AGGSITGLKFNPLNTNQFYASS---- 184 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEE---------TTSCEEEECSSCCSCCEEECCCS--SSCCCCEEEECSSCTTEEEEEC----
T ss_pred CCEEEEEEeCCCCCEEEEEe---------CCCEEEEEECCCCCceeEEEccC--CCCCEEEEEEeCCCCCEEEEEe----
Confidence 3688899999 456676643 24567777887765433322111 112278999998 688887651
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC----ccccccccCC
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----AVYTSLDPSP 341 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~----~~~~~~~~Sp 341 (954)
. ...|.++|+ ++..+.+... ..+..++|+|
T Consensus 185 -----------------~----------------------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (435)
T 4e54_B 185 -----------------M----------------------------EGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA 219 (435)
T ss_dssp -----------------S----------------------------SSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET
T ss_pred -----------------C----------------------------CCEEEEeeccCCceeEEeccCCCCccEEEEEECC
Confidence 1 123556677 4444443322 3456789999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
||+.|+..+.+ +.|.+||++++....+..+ ...+..++|+|+++.+++..
T Consensus 220 ~~~~l~~g~~d-------------g~i~~wd~~~~~~~~~~~h-------------~~~v~~v~~~p~~~~~~~s~---- 269 (435)
T 4e54_B 220 SSRMVVTGDNV-------------GNVILLNMDGKELWNLRMH-------------KKKVTHVALNPCCDWFLATA---- 269 (435)
T ss_dssp TTTEEEEECSS-------------SBEEEEESSSCBCCCSBCC-------------SSCEEEEEECTTCSSEEEEE----
T ss_pred CCCEEEEEeCC-------------CcEeeeccCcceeEEEecc-------------cceEEeeeecCCCceEEEEe----
Confidence 99999887643 3899999987654433322 24457899999998766541
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCceEE---eecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEIL---HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l---~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 498 (954)
+..+.|.+|++ ........+ ..+...+..++|+|||++|+..+.++. |.++++.++. .+..+
T Consensus 270 --------s~d~~v~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~----i~iwd~~~~~-~~~~~ 334 (435)
T 4e54_B 270 --------SVDQTVKIWDL--RQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE----IRVYSASQWD-CPLGL 334 (435)
T ss_dssp --------ETTSBCCEEET--TTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC----EEEEESSSSS-SEEEE
T ss_pred --------cCcceeeEEec--ccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE----EEEEECCCCc-cceEE
Confidence 22446778886 222222222 344566788999999999988765543 4445555542 22222
Q ss_pred ecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccce
Q 002194 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYET 578 (954)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 578 (954)
...... ...........|+|++..++...... +..++.. ..+...|++||..+|+.......... ..
T Consensus 335 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~------~~~~~~i~iwd~~~g~~~~~l~~~~~---~~ 401 (435)
T 4e54_B 335 IPHPHR-HFQHLTPIKAAWHPRYNLIVVGRYPD---PNFKSCT------PYELRTIDVFDGNSGKMMCQLYDPES---SG 401 (435)
T ss_dssp CCCCCC-CCSSSCCCBCEECSSSSCEEEECCCC---TTSCCSS------TTCCCCEEEECSSSCCEEEEECCSSC---CC
T ss_pred eccccc-ccccceeEEEEEcCCCCEEEEEEcCC---CCeEEEE------ecCCCEEEEEECCCCcEEEEEeCCCC---Cc
Confidence 211111 00000111156889988877765321 1111111 11223589999998876544322211 00
Q ss_pred eEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCcee
Q 002194 579 TVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (954)
Q Consensus 579 ~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~ 622 (954)
+..+ ..|+|||+.|+. .. -..|++|++.+|+.+
T Consensus 402 v~s~------~~fspdg~~las-g~----d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 402 ISSL------NEFNPMGDTLAS-AM----GYHILIWSQQEARTR 434 (435)
T ss_dssp CCCE------EEECTTSSCEEE-EC----SSEEEECCCC-----
T ss_pred EEEE------EEECCCCCEEEE-Ec----CCcEEEEECCcCeee
Confidence 1111 258999987653 22 236999998887654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-12 Score=153.21 Aligned_cols=238 Identities=14% Similarity=0.095 Sum_probs=149.0
Q ss_pred CCCCceecCCC-CEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCC-C-ceeeeecCC
Q 002194 110 PLPALSFSPQR-DKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL-G-QEIEIQGFP 186 (954)
Q Consensus 110 ~~~~~~~SPDG-~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~-~-~~~~lt~~~ 186 (954)
.+..++|+|++ +.|+..+.+ ..|.+|++..+... + ..+.+.++.
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~D---------------------------------~~i~~W~~~~~~~~~~~~~~~~~~h~ 430 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASRD---------------------------------KSIILWKLTKDDKAYGVAQRRLTGHS 430 (694)
T ss_dssp CEEEEECCTTCCSEEEEEETT---------------------------------SEEEEEECCCSTTCSCEEEEEEECCS
T ss_pred eeEEEEecCCCCCEEEEEeCC---------------------------------CcEEEEEccCCCcccccccceecCCC
Confidence 35677888876 456666654 57999998643211 1 123454433
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
..+..+.|||||+.|+..+. ...|.++|+.+++..+........ +..++|+|||+.|+...
T Consensus 431 --~~v~~v~~s~~g~~l~sgs~---------Dg~v~vwd~~~~~~~~~~~~h~~~----v~~~~~s~~~~~l~s~s---- 491 (694)
T 3dm0_A 431 --HFVEDVVLSSDGQFALSGSW---------DGELRLWDLAAGVSTRRFVGHTKD----VLSVAFSLDNRQIVSAS---- 491 (694)
T ss_dssp --SCEEEEEECTTSSEEEEEET---------TSEEEEEETTTTEEEEEEECCSSC----EEEEEECTTSSCEEEEE----
T ss_pred --CcEEEEEECCCCCEEEEEeC---------CCcEEEEECCCCcceeEEeCCCCC----EEEEEEeCCCCEEEEEe----
Confidence 46888999999999987552 567888898887664443333222 77899999999988761
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCC----C-ccccccccC
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP----P-AVYTSLDPS 340 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~----~-~~~~~~~~S 340 (954)
. ...|.+++. ......+.. . ..+..++|+
T Consensus 492 -----------------~----------------------------D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 492 -----------------R----------------------------DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS 526 (694)
T ss_dssp -----------------T----------------------------TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred -----------------C----------------------------CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence 1 123445555 332222221 1 456788999
Q ss_pred CCCc--EEEEEeecCCcccccccCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEE
Q 002194 341 PDEK--YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (954)
Q Consensus 341 pDGk--~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~ 417 (954)
|++. .|+..+. ++.|.+||+.+.+.. .+..+ ...+..++|+|||+.++..
T Consensus 527 ~~~~~~~l~s~s~-------------d~~v~vwd~~~~~~~~~~~~h-------------~~~v~~v~~spdg~~l~sg- 579 (694)
T 3dm0_A 527 PNTLQPTIVSASW-------------DKTVKVWNLSNCKLRSTLAGH-------------TGYVSTVAVSPDGSLCASG- 579 (694)
T ss_dssp SCSSSCEEEEEET-------------TSCEEEEETTTCCEEEEECCC-------------SSCEEEEEECTTSSEEEEE-
T ss_pred CCCCcceEEEEeC-------------CCeEEEEECCCCcEEEEEcCC-------------CCCEEEEEEeCCCCEEEEE-
Confidence 9984 4555552 238999999865543 33322 2345789999999876654
Q ss_pred EeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+..+.|.+|++ ..++..........+..++||||+..|+.... + .|.++|+.++
T Consensus 580 ------------~~Dg~i~iwd~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~----~i~iwd~~~~ 633 (694)
T 3dm0_A 580 ------------GKDGVVLLWDL---AEGKKLYSLEANSVIHALCFSPNRYWLCAATE-H----GIKIWDLESK 633 (694)
T ss_dssp ------------ETTSBCEEEET---TTTEEEECCBCSSCEEEEEECSSSSEEEEEET-T----EEEEEETTTT
T ss_pred ------------eCCCeEEEEEC---CCCceEEEecCCCcEEEEEEcCCCcEEEEEcC-C----CEEEEECCCC
Confidence 34567889996 33332222233445677999999988776542 2 2555566553
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-11 Score=140.00 Aligned_cols=177 Identities=10% Similarity=0.127 Sum_probs=103.9
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..+..++|+|||++|+.. .+ +.+.+||++ ++....+.... +..+......+..++|+|||
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~d-------------~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~p~~ 238 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-DD-------------LRINLWHLEITDRSFNIVDIK-----PANMEELTEVITAAEFHPNS 238 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-CS-------------SEEEEEETTEEEEEEEEEECC-----CSSGGGCCCCEEEEEECSSC
T ss_pred cceEEEEEcCCCCEEEEe-CC-------------CeEEEEECCCCCceeeeeecc-----cccccccCcceEEEEECCCC
Confidence 678899999999999875 22 289999998 33332221110 11112233456789999999
Q ss_pred -CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCC-----ceEEeeccc------------ccCceeeccCCceEEE
Q 002194 411 -PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-----PEILHKLDL------------RYGGISWCDDSLALVY 472 (954)
Q Consensus 411 -~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-----~~~l~~~~~------------~~~~~~~spDg~~l~~ 472 (954)
+.++.. +..+.|.+|++ ..++ ...+..+.. .+..++|+|||+.|+.
T Consensus 239 ~~~l~s~-------------~~dg~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 302 (447)
T 3dw8_B 239 CNTFVYS-------------SSKGTIRLCDM---RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT 302 (447)
T ss_dssp TTEEEEE-------------ETTSCEEEEET---TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE
T ss_pred CcEEEEE-------------eCCCeEEEEEC---cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE
Confidence 544443 33557889996 3333 345544433 6788999999999987
Q ss_pred EEeccccceEEEEEcCCCCCCCcEEEecCCCCCcc------CCC---CCCCeeeccCCcEEEEEEeeccCCCcEEEEecC
Q 002194 473 ESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVY------SDP---GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGN 543 (954)
Q Consensus 473 ~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~------~~~---~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~ 543 (954)
... + .|.++|+... ..+......+..... ... ....+.|+|||++|+...
T Consensus 303 ~~~-~----~v~iwd~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s--------------- 361 (447)
T 3dw8_B 303 RDY-L----SVKVWDLNME-NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS--------------- 361 (447)
T ss_dssp EES-S----EEEEEETTCC-SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC---------------
T ss_pred eeC-C----eEEEEeCCCC-ccccceeeccccccccccccccccccccceEEEECCCCCEEEEec---------------
Confidence 755 2 2444455431 122222221111000 000 001168999999986654
Q ss_pred CCCCCCCCCeEEEEECCCCCeEEEecc
Q 002194 544 GATPEGNIPFLDLFDINTGSKERIWES 570 (954)
Q Consensus 544 ~~~~~~~~~~l~~~d~~~g~~~~l~~~ 570 (954)
....|++||+.+++...+...
T Consensus 362 ------~dg~v~iwd~~~~~~~~~~~~ 382 (447)
T 3dw8_B 362 ------YNNFFRMFDRNTKRDITLEAS 382 (447)
T ss_dssp ------STTEEEEEETTTCCEEEEECC
T ss_pred ------cCCEEEEEEcCCCcceeeeec
Confidence 123599999999987765443
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.3e-13 Score=139.40 Aligned_cols=196 Identities=9% Similarity=0.008 Sum_probs=124.3
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~a 746 (954)
.|.||++||..... ..|. .....|+++||.|++ .|.+|+|.+.... .......+|+.+.
T Consensus 10 g~~vvllHG~~~~~-----------~~w~----~~~~~L~~~g~~via---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~ 71 (264)
T 2wfl_A 10 QKHFVLVHGGCLGA-----------WIWY----KLKPLLESAGHKVTA---VDLSAAGINPRRLDEIHTFRDYSEPLMEV 71 (264)
T ss_dssp CCEEEEECCTTCCG-----------GGGT----THHHHHHHTTCEEEE---ECCTTSTTCSCCGGGCCSHHHHHHHHHHH
T ss_pred CCeEEEECCCcccc-----------chHH----HHHHHHHhCCCEEEE---eecCCCCCCCCCcccccCHHHHHHHHHHH
Confidence 57899999964211 1121 345677789999999 6777888875421 2345666776666
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC-CCCC---------------CC------Cc
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR-TLTP---------------FG------FQ 804 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~-~~~~---------------~~------~~ 804 (954)
++.+ +. .+++.|+||||||.+++.++.++|++++++|++++.... .... +. +.
T Consensus 72 l~~l---~~--~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (264)
T 2wfl_A 72 MASI---PP--DEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYNEKCPADMMLDSQFSTYG 146 (264)
T ss_dssp HHHS---CT--TCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCCCCTTSCTTHHHHHHHHHSCTTTTTTCEEEEES
T ss_pred HHHh---CC--CCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeeccCCCCcchhhHHHHhhhcCcchhhhhhhhhhcc
Confidence 6554 21 258999999999999999999999999999998864211 0000 00 00
Q ss_pred ---c--c----cchh-----hh--cHH--HHH-h-cCcc----------ccc--C-CCCCCEEEEEeCCCCCCCCchHHH
Q 002194 805 ---N--E----DRTL-----WE--ATS--TYV-E-MSPF----------MSA--N-KLKKPILLVHGEEDNNSGTLTMQS 851 (954)
Q Consensus 805 ---~--~----~~~~-----~~--~~~--~~~-~-~sp~----------~~~--~-~~~~P~Lii~G~~D~~v~~~~~~~ 851 (954)
. . .... +. ..+ .+. . ..+. ... . ..++|+|+++|++|..+| ...+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~ 224 (264)
T 2wfl_A 147 NPENPGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFP--VEFQ 224 (264)
T ss_dssp CTTSCEEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHTTSCCCCTTTGGGSCEEEEEETTCSSSC--HHHH
T ss_pred CCCCCcchhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCcccccccccccccChHHhCCCCeEEEEeCCcCCCC--HHHH
Confidence 0 0 0000 00 000 000 0 0010 000 1 135799999999999998 8888
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+++.+.+.. .++++++++||... .+..+.+.+.+.+|+.
T Consensus 225 ~~~~~~~p~----~~~~~i~~~gH~~~-~e~P~~~~~~l~~f~~ 263 (264)
T 2wfl_A 225 KWFVESVGA----DKVKEIKEADHMGM-LSQPREVCKCLLDISD 263 (264)
T ss_dssp HHHHHHHCC----SEEEEETTCCSCHH-HHSHHHHHHHHHHHHC
T ss_pred HHHHHhCCC----ceEEEeCCCCCchh-hcCHHHHHHHHHHHhh
Confidence 888777643 48899999999863 5667788888888864
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.6e-14 Score=145.82 Aligned_cols=148 Identities=13% Similarity=0.102 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC------CcccEEEEeccCCCCCCCCCCCccccchhhhc
Q 002194 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP------HLFCCGIARSGAYNRTLTPFGFQNEDRTLWEA 813 (954)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p------~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (954)
..|+.+++++|.+....+..+++|+||||||.+|+.++.+.+ ..+++++.+++........ .+... ..+..
T Consensus 83 ~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~~-~~~~~--~~~~~ 159 (243)
T 1ycd_A 83 ELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPDP-EHPGE--LRITE 159 (243)
T ss_dssp GCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEECT-TSTTC--EEECG
T ss_pred hhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCccc-ccccc--cccch
Confidence 346666667766543234468999999999999999998742 2477888887754311000 00000 00000
Q ss_pred HHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC---CcEEEEEeCCCCCcCCCcccHHHHHHHH
Q 002194 814 TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG---ALCRLVILPFESHGYAARESIMHVLWET 890 (954)
Q Consensus 814 ~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~H~~~~~~~~~~~~~~i 890 (954)
.+. ..+..+.++++|+|++||++|.+|| +.+++++++.++..+ .....++++++||.+... ..+.+.+
T Consensus 160 --~~~--~~~~~~~~~~~P~l~i~G~~D~~vp--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~gH~~~~~---~~~~~~i 230 (243)
T 1ycd_A 160 --KFR--DSFAVKPDMKTKMIFIYGASDQAVP--SVRSKYLYDIYLKAQNGNKEKVLAYEHPGGHMVPNK---KDIIRPI 230 (243)
T ss_dssp --GGT--TTTCCCTTCCCEEEEEEETTCSSSC--HHHHHHHHHHHHHHTTTCTTTEEEEEESSSSSCCCC---HHHHHHH
T ss_pred --hHH--HhccCcccCCCCEEEEEeCCCCccC--HHHHHHHHHHhhhhccccccccEEEecCCCCcCCch---HHHHHHH
Confidence 010 1223456688999999999999999 999999999998641 112334566679987532 3578899
Q ss_pred HHHHHHhcc
Q 002194 891 DRWLQKYCV 899 (954)
Q Consensus 891 ~~fl~~~l~ 899 (954)
.+||++++.
T Consensus 231 ~~fl~~~~~ 239 (243)
T 1ycd_A 231 VEQITSSLQ 239 (243)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhhh
Confidence 999999875
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.2e-13 Score=142.09 Aligned_cols=208 Identities=11% Similarity=0.052 Sum_probs=131.9
Q ss_pred eEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCc
Q 002194 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE 729 (954)
Q Consensus 650 ~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~ 729 (954)
.+++....-|.+ ..|.||++||.+.... .|. .....|+++||.|++ .|.+|+|.+
T Consensus 33 ~~l~y~~~G~~~-------~g~~vvllHG~~~~~~-----------~w~----~~~~~L~~~g~rvia---~Dl~G~G~S 87 (297)
T 2xt0_A 33 LRMHYVDEGPRD-------AEHTFLCLHGEPSWSF-----------LYR----KMLPVFTAAGGRVVA---PDLFGFGRS 87 (297)
T ss_dssp CCEEEEEESCTT-------CSCEEEEECCTTCCGG-----------GGT----TTHHHHHHTTCEEEE---ECCTTSTTS
T ss_pred eEEEEEEccCCC-------CCCeEEEECCCCCcce-----------eHH----HHHHHHHhCCcEEEE---eCCCCCCCC
Confidence 788776654321 0367899999742211 121 235577889999999 777889988
Q ss_pred ccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC-CCCC-
Q 002194 730 EAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-PFGF- 803 (954)
Q Consensus 730 ~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-~~~~- 803 (954)
..+. .......+|+.+.++.| +.+++.|+||||||.+++.+|.++|++++++|++++....... ...+
T Consensus 88 ~~~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~ 161 (297)
T 2xt0_A 88 DKPTDDAVYTFGFHRRSLLAFLDAL------QLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTALAVGLSPGKGFE 161 (297)
T ss_dssp CEESCGGGCCHHHHHHHHHHHHHHH------TCCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCCCCSSSCSCHHHH
T ss_pred CCCCCcccCCHHHHHHHHHHHHHHh------CCCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCCCCcccCCchhHH
Confidence 6532 23556677777777765 2358999999999999999999999999999999874311100 0000
Q ss_pred --------cccc--------c-hhh--hcHHHHH----------------hcC--------------cccccC-CCCCCE
Q 002194 804 --------QNED--------R-TLW--EATSTYV----------------EMS--------------PFMSAN-KLKKPI 833 (954)
Q Consensus 804 --------~~~~--------~-~~~--~~~~~~~----------------~~s--------------p~~~~~-~~~~P~ 833 (954)
.... . ... +....|. ..- ....+. ++++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~ 241 (297)
T 2xt0_A 162 SWRDFVANSPDLDVGKLMQRAIPGITDAEVAAYDAPFPGPEFKAGVRRFPAIVPITPDMEGAEIGRQAMSFWSTQWSGPT 241 (297)
T ss_dssp HHHHHHHTCTTCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHGGGGSCCSTTSTTHHHHHHHHHHHHHTCCSCE
T ss_pred HHHHHhhcccccchhHHHhccCccCCHHHHHHHhccccCcchhHHHHHHHHhCccccccchhhHHHHHHHHhhhccCCCe
Confidence 0000 0 000 0000000 000 011345 889999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 834 Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
|+++|++|..+| ..+.++.+.+... ....+.++++||... . ..+.+.+.|.+||.
T Consensus 242 Lvi~G~~D~~~~---~~~~~~~~~~p~~--~~~~~~~~~~GH~~~-~-~p~~~~~~i~~fl~ 296 (297)
T 2xt0_A 242 FMAVGAQDPVLG---PEVMGMLRQAIRG--CPEPMIVEAGGHFVQ-E-HGEPIARAALAAFG 296 (297)
T ss_dssp EEEEETTCSSSS---HHHHHHHHHHSTT--CCCCEEETTCCSSGG-G-GCHHHHHHHHHHTT
T ss_pred EEEEeCCCcccC---hHHHHHHHhCCCC--eeEEeccCCCCcCcc-c-CHHHHHHHHHHHHh
Confidence 999999999875 5667777666433 334344799999875 4 66788888888874
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.46 E-value=8.8e-12 Score=137.10 Aligned_cols=300 Identities=12% Similarity=0.063 Sum_probs=166.6
Q ss_pred Ccccceee-----cC-CCCeEEEEEeeccccCCCCceEEEEEECCCCc-------ee-ecccCCCccccccccceeEecC
Q 002194 189 AKLNFVTW-----SQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-------AR-PLFQSPDIYLNAIFDNFVWVNN 254 (954)
Q Consensus 189 ~~~~~~~w-----SP-DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~-------~~-~lt~~~~~~~~~~~~~~~wspD 254 (954)
..+..+.| +| ||+.|+..+ .++...|| ++..++ .. .+..+.. .+..++|+||
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs-------~D~~v~iW--d~~~~~~~~~~~~~~~~l~~h~~-----~V~~~~~~~~ 87 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGS-------RDKTVMIW--KLYEEEQNGYFGIPHKALTGHNH-----FVSDLALSQE 87 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEE-------TTSCEEEE--EECSSCCSSBSEEEEEEECCCSS-----CEEEEEECSS
T ss_pred hhhhheeeEEEeecCCCCCEEEEEc-------CCCEEEEE--ECCcCCcccccccccchhccCCC-----ceEEEEECCC
Confidence 35778888 77 998888755 33455555 543322 11 2222222 2678999999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-
Q 002194 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP- 331 (954)
Q Consensus 255 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~- 331 (954)
+++|+... ....|.++|+ +|+. ..+...
T Consensus 88 ~~~l~s~s-------------------------------------------------~D~~v~lwd~~~~~~~~~~~~h~ 118 (343)
T 2xzm_R 88 NCFAISSS-------------------------------------------------WDKTLRLWDLRTGTTYKRFVGHQ 118 (343)
T ss_dssp TTEEEEEE-------------------------------------------------TTSEEEEEETTSSCEEEEEECCC
T ss_pred CCEEEEEc-------------------------------------------------CCCcEEEEECCCCcEEEEEcCCC
Confidence 99888651 1234667788 6643 344444
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
..+..++|||||++|+..+.+ +.+.+||+.+.......... .....+..++|+|+++
T Consensus 119 ~~v~~v~~sp~~~~l~s~~~d-------------~~i~~wd~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~ 175 (343)
T 2xzm_R 119 SEVYSVAFSPDNRQILSAGAE-------------REIKLWNILGECKFSSAEKE----------NHSDWVSCVRYSPIMK 175 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETT-------------SCEEEEESSSCEEEECCTTT----------SCSSCEEEEEECCCCC
T ss_pred CcEEEEEECCCCCEEEEEcCC-------------CEEEEEeccCCceeeeeccc----------CCCceeeeeeeccccc
Confidence 778899999999999887743 38999999865443332211 1113456788999885
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
..... ...+..-+..+..+.|.+|+. .+.....+..+...+..++|+|||++|+..+.++ .|.++|+...
T Consensus 176 ~~~~~---~~~~~~l~s~~~d~~i~iwd~---~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg----~v~iwd~~~~ 245 (343)
T 2xzm_R 176 SANKV---QPFAPYFASVGWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDK----KLLIWDILNL 245 (343)
T ss_dssp SCSCC---CSSCCEEEEEETTSEEEEEET---TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTC----EEEEEESSCC
T ss_pred ccccc---CCCCCEEEEEcCCCEEEEEcC---CCceeEEEcCccccceEEEECCCCCEEEEEcCCC----eEEEEECCCC
Confidence 31000 000000001133557888984 4333344556677788899999999998876543 2444454222
Q ss_pred CCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccC
Q 002194 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 492 ~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
..+...... ...+.. ++|+|++++++... ...+++||+.+++...+..-.
T Consensus 246 -~~~~~~~~~-~~~v~~------v~~sp~~~~la~~~----------------------d~~v~iw~~~~~~~~~~~~~~ 295 (343)
T 2xzm_R 246 -TYPQREFDA-GSTINQ------IAFNPKLQWVAVGT----------------------DQGVKIFNLMTQSKAPVCTIE 295 (343)
T ss_dssp -SSCSEEEEC-SSCEEE------EEECSSSCEEEEEE----------------------SSCEEEEESSSCCSCSEEECC
T ss_pred -cccceeecC-CCcEEE------EEECCCCCEEEEEC----------------------CCCEEEEEeCCCCCCceEEee
Confidence 122222211 111222 88999998876543 113888998876543321111
Q ss_pred ccccc--ceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002194 572 KEKYY--ETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (954)
Q Consensus 572 ~~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~ 618 (954)
..... .........-...+|+|||+.++.... -..+.+|++.+
T Consensus 296 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~----Dg~v~~w~~~~ 340 (343)
T 2xzm_R 296 AEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT----DGVIRTFSFET 340 (343)
T ss_dssp CCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEET----TSEEEEEEEEE
T ss_pred cCcchhhhhhcCCCCceEEEEECCCCCeEEEecC----CceEEEEEEEc
Confidence 00000 000000000012579999987765433 24577777544
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-13 Score=143.95 Aligned_cols=211 Identities=10% Similarity=-0.030 Sum_probs=134.2
Q ss_pred EcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCC
Q 002194 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (954)
Q Consensus 645 ~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~ 724 (954)
...+|.++....+-+ .|+||++||.+.... .|.. ....|+ ++|.|++ .+..
T Consensus 14 ~~~~g~~l~~~~~g~----------~~~vv~lHG~~~~~~-----------~~~~----~~~~L~-~~~~vi~---~D~~ 64 (302)
T 1mj5_A 14 IEIKGRRMAYIDEGT----------GDPILFQHGNPTSSY-----------LWRN----IMPHCA-GLGRLIA---CDLI 64 (302)
T ss_dssp EEETTEEEEEEEESC----------SSEEEEECCTTCCGG-----------GGTT----TGGGGT-TSSEEEE---ECCT
T ss_pred EEECCEEEEEEEcCC----------CCEEEEECCCCCchh-----------hhHH----HHHHhc-cCCeEEE---EcCC
Confidence 345788887665421 378999999742211 1211 122344 4589999 5666
Q ss_pred CCCCcccch------hhHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC
Q 002194 725 GEGDEEAND------RFVEQLVACAEAAVEEVVRRGVAHP-SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (954)
Q Consensus 725 G~G~~~~~~------~~~~~~~~D~~~av~~l~~~~~~d~-~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~ 797 (954)
|+|.+.... .......+|+.++++.+ +. +++.++|||+||.+++.++.++|++++++|+++|.....
T Consensus 65 G~G~S~~~~~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~ 138 (302)
T 1mj5_A 65 GMGDSDKLDPSGPERYAYAEHRDYLDALWEAL------DLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPI 138 (302)
T ss_dssp TSTTSCCCSSCSTTSSCHHHHHHHHHHHHHHT------TCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCB
T ss_pred CCCCCCCCCCCCcccccHHHHHHHHHHHHHHh------CCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCCch
Confidence 778775432 23455666666666554 33 689999999999999999999999999999999865311
Q ss_pred CCC-CC--C---------c----------------------cccc----hhh--------hcHHHHH----h--------
Q 002194 798 LTP-FG--F---------Q----------------------NEDR----TLW--------EATSTYV----E-------- 819 (954)
Q Consensus 798 ~~~-~~--~---------~----------------------~~~~----~~~--------~~~~~~~----~-------- 819 (954)
... .. . . .... ..+ .....+. .
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (302)
T 1mj5_A 139 EWADFPEQDRDLFQAFRSQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPA 218 (302)
T ss_dssp CGGGSCGGGHHHHHHHHSTTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSH
T ss_pred hhhhhhHHHHHHHHHHhccchhhhhcChHHHHHHHHHhcCcccCCHHHHHHHHHHhhcccccccchHHHHHhccccccch
Confidence 000 00 0 0 0000 000 0000000 0
Q ss_pred ------cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHH
Q 002194 820 ------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (954)
Q Consensus 820 ------~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~f 893 (954)
.+....+.++++|+|+++|++|..+| +..++++.+.+ .. +++++ ++||... .++.+.+.+.|.+|
T Consensus 219 ~~~~~~~~~~~~l~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~----~~-~~~~~-~~gH~~~-~e~p~~~~~~i~~f 289 (302)
T 1mj5_A 219 DVVAIARDYAGWLSESPIPKLFINAEPGALTT--GRMRDFCRTWP----NQ-TEITV-AGAHFIQ-EDSPDEIGAAIAAF 289 (302)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEEEEEECSSSS--HHHHHHHTTCS----SE-EEEEE-EESSCGG-GTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhccCCCeEEEEeCCCCCCC--hHHHHHHHHhc----CC-ceEEe-cCcCccc-ccCHHHHHHHHHHH
Confidence 01123456789999999999999998 77766665443 23 78888 9999864 56678899999999
Q ss_pred HHHhcc
Q 002194 894 LQKYCV 899 (954)
Q Consensus 894 l~~~l~ 899 (954)
+.+...
T Consensus 290 l~~~~~ 295 (302)
T 1mj5_A 290 VRRLRP 295 (302)
T ss_dssp HHHHSC
T ss_pred HHhhcc
Confidence 988654
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-12 Score=137.67 Aligned_cols=212 Identities=11% Similarity=0.103 Sum_probs=129.7
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCC--------CC
Q 002194 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT--------TP 722 (954)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~--------~~ 722 (954)
.+.+.||+|++ ++|.|+||.+||+. + .+.+||+++..++ .+
T Consensus 124 sf~~~i~lP~g-----~~P~Pvii~~~~~~----------------~----------~~~~G~A~i~f~~~~va~d~~~g 172 (433)
T 4g4g_A 124 SFSASIRKPSG-----AGPFPAIIGIGGAS----------------I----------PIPSNVATITFNNDEFGAQMGSG 172 (433)
T ss_dssp EEEEEEECCSS-----SCCEEEEEEESCCC----------------S----------CCCTTSEEEEECHHHHSCCSSGG
T ss_pred EEEEEEECCCC-----CCCccEEEEECCCc----------------c----------ccCCCeEEEEeCCcccccccCCC
Confidence 56999999975 46799999998741 0 0356999998443 22
Q ss_pred CCCCCCcccc-----hhh--HHHHHHHHHHHHHHHHH----cCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEec
Q 002194 723 IIGEGDEEAN-----DRF--VEQLVACAEAAVEEVVR----RGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (954)
Q Consensus 723 ~~G~G~~~~~-----~~~--~~~~~~D~~~av~~l~~----~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (954)
+.|+|. +.. ..+ ......|+.++++||.. ++.||++||+++|+|+||..|+++++.+ ++|+++|+.+
T Consensus 173 srG~g~-f~~ly~~~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D-~Ri~~vi~~~ 250 (433)
T 4g4g_A 173 SRGQGK-FYDLFGRDHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALV-DRIALTIPQE 250 (433)
T ss_dssp GTTCSH-HHHHHCTTCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHC-TTCSEEEEES
T ss_pred cCCccc-cccccCCccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcC-CceEEEEEec
Confidence 344443 211 111 23346799999999999 8899999999999999999999999999 6899999998
Q ss_pred cCCCCCCCC--------CCCccc------cchhhhcHHHHHhcC------cccc---cCC-CCCCEEEEEeCCCCCCCCc
Q 002194 792 GAYNRTLTP--------FGFQNE------DRTLWEATSTYVEMS------PFMS---ANK-LKKPILLVHGEEDNNSGTL 847 (954)
Q Consensus 792 ~~~~~~~~~--------~~~~~~------~~~~~~~~~~~~~~s------p~~~---~~~-~~~P~Lii~G~~D~~v~~~ 847 (954)
+..+-...- ++.... ....|-.+ .|..+. |+++ ++- ...|+|++.| +|..++
T Consensus 251 sg~~G~~~~R~~~~~~~~Ge~v~~~~~~~ge~~Wf~~-~f~~y~~~~~~LPfD~heL~ALiAPRPlLv~~g-~D~w~~-- 326 (433)
T 4g4g_A 251 SGAGGAACWRISDQQKAAGANIQTAAQIITENPWFSR-NFDPHVNSITSVPQDHHLLAALIVPRGLAVFEN-NIDWLG-- 326 (433)
T ss_dssp CCTTTTSCHHHHHHHHHTTCCCCCHHHHTTTCCCSCT-TTGGGTTCGGGSSCCGGGHHHHHTTSEEEEEEC-CCTTTC--
T ss_pred CCCCchhhhhhchhhcccCcchhhhhcccCCccccch-hhHhhccccccCCcCHHHHHHhhCCceEEEecC-CCCcCC--
Confidence 643311100 000000 00111111 011110 1111 011 1579999999 887776
Q ss_pred hHHHHHHHHHHH------hCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcccCCC
Q 002194 848 TMQSDRFFNALK------GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNTA 903 (954)
Q Consensus 848 ~~~~~~~~~~l~------~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~~ 903 (954)
+......+.+++ ....++.+.+.++.+|.....+ ..+.+.+||++||++...
T Consensus 327 p~g~~~a~~aa~~VY~~lGa~d~l~~~~~ggH~Hc~fp~~----~r~~~~~F~~k~Lkg~~~ 384 (433)
T 4g4g_A 327 PVSTTGCMAAGRLIYKAYGVPNNMGFSLVGGHNHCQFPSS----QNQDLNSYINYFLLGQGS 384 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGEEEEECCSSCTTCCCGG----GHHHHHHHHHHHTTCCSC
T ss_pred cHHHHHHHHHHHHHHHHcCCccceEEEeeCCCCcccCCHH----HHHHHHHHHHHHhCCCCC
Confidence 654443333332 2234677766555566532222 246778999999987543
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.9e-13 Score=131.91 Aligned_cols=127 Identities=14% Similarity=0.105 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHH
Q 002194 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATST 816 (954)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (954)
....+|+.++++.+ + +++.++|||+||.+++.++.++|++++++|+++|...... .+
T Consensus 59 ~~~~~~~~~~~~~~------~-~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~---~~------------- 115 (191)
T 3bdv_A 59 DRWVLAIRRELSVC------T-QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRF---EI------------- 115 (191)
T ss_dssp HHHHHHHHHHHHTC------S-SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGG---TC-------------
T ss_pred HHHHHHHHHHHHhc------C-CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCccccc---cC-------------
Confidence 44455555554432 3 6899999999999999999999999999999998643210 00
Q ss_pred HHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcc--cHHHHHHHHHHHH
Q 002194 817 YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE--SIMHVLWETDRWL 894 (954)
Q Consensus 817 ~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~--~~~~~~~~i~~fl 894 (954)
.+...+.++++|+|++||++|..+| ++.++++.+.+ +++++++++++|...... ...+.++.+.+||
T Consensus 116 ----~~~~~~~~~~~P~lii~g~~D~~~~--~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl 184 (191)
T 3bdv_A 116 ----DDRIQASPLSVPTLTFASHNDPLMS--FTRAQYWAQAW-----DSELVDVGEAGHINAEAGFGPWEYGLKRLAEFS 184 (191)
T ss_dssp ----TTTSCSSCCSSCEEEEECSSBTTBC--HHHHHHHHHHH-----TCEEEECCSCTTSSGGGTCSSCHHHHHHHHHHH
T ss_pred ----ccccccccCCCCEEEEecCCCCcCC--HHHHHHHHHhc-----CCcEEEeCCCCcccccccchhHHHHHHHHHHHH
Confidence 0113456788999999999999998 88888888876 258899999999874321 2344457788888
Q ss_pred HHh
Q 002194 895 QKY 897 (954)
Q Consensus 895 ~~~ 897 (954)
++.
T Consensus 185 ~~~ 187 (191)
T 3bdv_A 185 EIL 187 (191)
T ss_dssp HTT
T ss_pred HHh
Confidence 764
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.46 E-value=6e-13 Score=145.54 Aligned_cols=198 Identities=12% Similarity=0.074 Sum_probs=120.9
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCC-CCCCCCCcccchhhHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT-PIIGEGDEEANDRFVEQLVACAEAAVE 748 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~-~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (954)
.|+||++||.... ...+. +-...+..| ++||.|+.++.+ +..|+|.+.. .....|+.++++
T Consensus 38 ~~~vvllHG~~~~-----------~~~~~-~~~~l~~~L-~~g~~Vi~~Dl~~D~~G~G~S~~-----~~~~~d~~~~~~ 99 (335)
T 2q0x_A 38 RRCVLWVGGQTES-----------LLSFD-YFTNLAEEL-QGDWAFVQVEVPSGKIGSGPQDH-----AHDAEDVDDLIG 99 (335)
T ss_dssp SSEEEEECCTTCC-----------TTCST-THHHHHHHH-TTTCEEEEECCGGGBTTSCSCCH-----HHHHHHHHHHHH
T ss_pred CcEEEEECCCCcc-----------ccchh-HHHHHHHHH-HCCcEEEEEeccCCCCCCCCccc-----cCcHHHHHHHHH
Confidence 5789999995210 01111 111234444 789999985432 4578888732 345678888888
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHH--hCCCcccEEEEeccCCCCCCCCCCC-----------------------
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLA--HAPHLFCCGIARSGAYNRTLTPFGF----------------------- 803 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~--~~p~~~~a~v~~~~~~~~~~~~~~~----------------------- 803 (954)
++.+. .+.+++.|+||||||.+|+.++. .+|++++++|+.+|..+.....+..
T Consensus 100 ~l~~~--l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (335)
T 2q0x_A 100 ILLRD--HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCDPENPLFTPEGCAARKEHVEKLMAEGRGEDSL 177 (335)
T ss_dssp HHHHH--SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCCTTSTTTSHHHHHHHHHHHHHHHHHTCTTCGG
T ss_pred HHHHH--cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCcccchhcccCHHHHHHHHHHHHHHhhccCccccc
Confidence 88775 34578999999999999999998 5789999999998865422000000
Q ss_pred -----ccc--cchhhhc------HHH-HH------hcCcccccCCCCCCEEEEEeCCCCCCCCchHH-HHHHHHHHHhCC
Q 002194 804 -----QNE--DRTLWEA------TST-YV------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQ-SDRFFNALKGHG 862 (954)
Q Consensus 804 -----~~~--~~~~~~~------~~~-~~------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~-~~~~~~~l~~~g 862 (954)
... ....+.. ... +. ..+....+.++++|+||+||++|.++| +.. ...+.+.+...-
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLvi~G~~D~~vp--~~~~~~~~~~~l~~~~ 255 (335)
T 2q0x_A 178 AMLKHYDIPITPARLAGGGFPTLQEAVWNPCIRKEFDVLRRSVGVIKVPLLLMLAHNVQYKP--SDEEVGTVLEGVRDHT 255 (335)
T ss_dssp GGTTTCSSCCCHHHHHTCSCSSHHHHTHHHHHTTCHHHHHHTGGGCCSCEEEEEECCTTCCC--CHHHHHHHHHHHHHHS
T ss_pred cchhhccCccCHHHHhhccCCCchhhhhhhhhhhhhhHHHHHHhcCCCCeEEEEecCCCCCC--hhhhHHHHHHHHHHhc
Confidence 000 0000000 000 00 001123466789999999999999998 654 223333333321
Q ss_pred CcEE--------E-----EEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 863 ALCR--------L-----VILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 863 ~~~~--------~-----~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
...+ + +++|++|| +..+.+.+||.+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~i~~agH---------e~~~~i~~FL~~~~ 295 (335)
T 2q0x_A 256 GCNRVTVSYFNDTCDELRRVLKAAES---------EHVAAILQFLADED 295 (335)
T ss_dssp SSSCEEEEECCCEECTTSCEEECCHH---------HHHHHHHHHHHHHH
T ss_pred CccccccccccchhhhhhcccCCCCC---------HHHHHHHHHHHhhh
Confidence 1122 5 78999999 23788899998764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-11 Score=139.53 Aligned_cols=213 Identities=7% Similarity=-0.005 Sum_probs=124.6
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEE--eccCCCcccCCccccccccCccceeeccC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE--LCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~--l~~~~~~~~~p~~~~~~~~g~~~~~wspD 409 (954)
..+..++|+|||++|++.+.. +.+++|++....... +.. +.+....+..++|+||
T Consensus 150 ~~v~~~~~sp~~~~l~~~~~~-------------g~v~~~~~~~~~~~~~~~~~----------~~~h~~~v~~~~~sp~ 206 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIADKF-------------GDVYSIDINSIPEEKFTQEP----------ILGHVSMLTDVHLIKD 206 (450)
T ss_dssp SCEEEEEECTTSSEEEEEETT-------------SEEEEEETTSCCCSSCCCCC----------SEECSSCEEEEEEEEC
T ss_pred CCceEEEEcCCCCEEEEEeCC-------------CcEEEEecCCccccccccee----------eecccCceEEEEEcCC
Confidence 567889999999999988732 378999987543221 001 1122245678999999
Q ss_pred ---CCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceE-EeecccccCceeeccCCceEEEEEeccccceEEEE
Q 002194 410 ---KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (954)
Q Consensus 410 ---g~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~-l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (954)
|+.++.. +..+.|++|++ ..+..... +..+...+..++|+ ||+.|+..+.++ .|.+
T Consensus 207 ~~~~~~l~s~-------------~~d~~i~vwd~--~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~----~v~v 266 (450)
T 2vdu_B 207 SDGHQFIITS-------------DRDEHIKISHY--PQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDD----KIFA 266 (450)
T ss_dssp TTSCEEEEEE-------------ETTSCEEEEEE--SCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSS----EEEE
T ss_pred CCCCcEEEEE-------------cCCCcEEEEEC--CCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCC----eEEE
Confidence 7765554 33457889986 23333334 34566778889999 999998876443 4666
Q ss_pred EcCCCCCCCcEEEecCCC--CC------------------ccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCC
Q 002194 486 ISPGSKDVAPRILFDRSS--ED------------------VYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGA 545 (954)
Q Consensus 486 ~d~~~~~~~~~~l~~~~~--~~------------------~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~ 545 (954)
+|+.++ +......... .. .... ..-.+.|+|||++++....
T Consensus 267 wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~~---------------- 327 (450)
T 2vdu_B 267 WDWKTG--KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF-AVSKIIKSKNLPFVAFFVE---------------- 327 (450)
T ss_dssp EETTTC--CEEEEEECHHHHGGGCCTTSBC----------CBCC-CEEEEEECSSSSEEEEEET----------------
T ss_pred EECCCC--cEeeeecchhhhhhhhhhcccccccccccccccceE-EEEEEEEeCCCCEEEEEEC----------------
Confidence 677665 2222221100 00 0000 0011678999998877761
Q ss_pred CCCCCCCeEEEEEC--CCC-CeEEE--eccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCc------eEEEE
Q 002194 546 TPEGNIPFLDLFDI--NTG-SKERI--WESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENT------QYYIQ 614 (954)
Q Consensus 546 ~~~~~~~~l~~~d~--~~g-~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~------~l~~~ 614 (954)
....|++|++ .++ +.+.+ ....+ .+.. .+|+|+ .+++...+...|. .+|.+
T Consensus 328 ----~d~~i~iw~~~~~~~~~l~~~~~~~~~~-----~v~~-------~~~~~~--~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 328 ----ATKCIIILEMSEKQKGDLALKQIITFPY-----NVIS-------LSAHND--EFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp ----TCSEEEEEEECSSSTTCEEEEEEEECSS-----CEEE-------EEEETT--EEEEEECCTTCCSSCCCSEEEEEE
T ss_pred ----CCCeEEEEEeccCCCCceeeccEeccCC-----ceEE-------EEecCC--cEEEEEecccCCCCCCcceEEEEE
Confidence 1235888888 443 22222 11111 1122 457774 4666666655554 88888
Q ss_pred ECCCCceeEee
Q 002194 615 SWPDKKSCQIT 625 (954)
Q Consensus 615 ~~~~g~~~~Lt 625 (954)
+..+++.+ ++
T Consensus 390 ~~~~~~~~-~~ 399 (450)
T 2vdu_B 390 NLNENSFV-VN 399 (450)
T ss_dssp ETTTTEEE-EC
T ss_pred EcCCCeEE-Ec
Confidence 87777654 55
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.45 E-value=5.6e-13 Score=140.11 Aligned_cols=197 Identities=9% Similarity=-0.049 Sum_probs=125.2
Q ss_pred cEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHH
Q 002194 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAV 747 (954)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av 747 (954)
|.||++||..... ..|. .....|+++||.|++ .|.+|+|.+.... .......+|+.+.+
T Consensus 4 ~~vvllHG~~~~~-----------~~w~----~~~~~L~~~g~~via---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l 65 (257)
T 3c6x_A 4 AHFVLIHTICHGA-----------WIWH----KLKPLLEALGHKVTA---LDLAASGVDPRQIEEIGSFDEYSEPLLTFL 65 (257)
T ss_dssp CEEEEECCTTCCG-----------GGGT----THHHHHHHTTCEEEE---ECCTTSTTCSCCGGGCCSHHHHTHHHHHHH
T ss_pred CcEEEEcCCccCc-----------CCHH----HHHHHHHhCCCEEEE---eCCCCCCCCCCCcccccCHHHHHHHHHHHH
Confidence 5789999963211 1121 356678889999999 6777888875421 23455566666555
Q ss_pred HHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC-CCCCCC-----------CCccc---------
Q 002194 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-RTLTPF-----------GFQNE--------- 806 (954)
Q Consensus 748 ~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~-~~~~~~-----------~~~~~--------- 806 (954)
+.+ + ..+++.|+||||||.+++.++.++|++++++|.+++... ...... .+...
T Consensus 66 ~~l---~--~~~~~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (257)
T 3c6x_A 66 EAL---P--PGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDG 140 (257)
T ss_dssp HTS---C--TTCCEEEEEEETHHHHHHHHHHHHGGGEEEEEEEEECCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETT
T ss_pred Hhc---c--ccCCeEEEEECcchHHHHHHHHhCchhhheEEEEecccCCCCCcchhHHHHHhhcCcchhhhhhhhccCCC
Confidence 443 1 125899999999999999999999999999999876421 000000 00000
Q ss_pred -------c-ch-----hhh-----cHHHHHh-cCccc----------cc--CC-CCCCEEEEEeCCCCCCCCchHHHHHH
Q 002194 807 -------D-RT-----LWE-----ATSTYVE-MSPFM----------SA--NK-LKKPILLVHGEEDNNSGTLTMQSDRF 854 (954)
Q Consensus 807 -------~-~~-----~~~-----~~~~~~~-~sp~~----------~~--~~-~~~P~Lii~G~~D~~v~~~~~~~~~~ 854 (954)
. .. .+. ....... ..+.. .. .. .++|+|+++|++|..+| +..++++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p--~~~~~~~ 218 (257)
T 3c6x_A 141 KEITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFL--PEFQLWQ 218 (257)
T ss_dssp EEEEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHSCCCCTTTGGGSCEEEEECTTCSSSC--HHHHHHH
T ss_pred CccccccccHHHHHHHHhcCCCHHHHHHHHHhcCCCccchhhhccccccChhhcCcccEEEEEeCCCcccC--HHHHHHH
Confidence 0 00 000 0000000 01100 00 11 25799999999999998 8888877
Q ss_pred HHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 855 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
.+.+. +.+++++|++||... .+..+.+.+.+.+|++++
T Consensus 219 ~~~~~----~~~~~~i~~~gH~~~-~e~P~~~~~~l~~f~~~~ 256 (257)
T 3c6x_A 219 IENYK----PDKVYKVEGGDHKLQ-LTKTKEIAEILQEVADTY 256 (257)
T ss_dssp HHHSC----CSEEEECCSCCSCHH-HHSHHHHHHHHHHHHHHC
T ss_pred HHHCC----CCeEEEeCCCCCCcc-cCCHHHHHHHHHHHHHhc
Confidence 77654 248899999999863 667788889999998764
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-11 Score=133.53 Aligned_cols=290 Identities=9% Similarity=-0.024 Sum_probs=157.9
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCC
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (954)
.++++++++.++... ....|+++|+++++..+....+... ....++|+|||+.++++..
T Consensus 4 g~~~~~~~~~~v~~~---------~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~~~v~~~--------- 62 (349)
T 1jmx_B 4 GPALKAGHEYMIVTN---------YPNNLHVVDVASDTVYKSCVMPDKF---GPGTAMMAPDNRTAYVLNN--------- 62 (349)
T ss_dssp CCCCCTTCEEEEEEE---------TTTEEEEEETTTTEEEEEEECSSCC---SSCEEEECTTSSEEEEEET---------
T ss_pred cccccCCCEEEEEeC---------CCCeEEEEECCCCcEEEEEecCCCC---CCceeEECCCCCEEEEEeC---------
Confidence 467788776554432 2578999999988776554433310 1457899999998887610
Q ss_pred CCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee-EcCCCc-------cccccccCCCC
Q 002194 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPPA-------VYTSLDPSPDE 343 (954)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-~l~~~~-------~~~~~~~SpDG 343 (954)
....|+++++ +|+.. .+.... ....++|||||
T Consensus 63 ---------------------------------------~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg 103 (349)
T 1jmx_B 63 ---------------------------------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG 103 (349)
T ss_dssp ---------------------------------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS
T ss_pred ---------------------------------------CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCC
Confidence 2345888898 77543 332221 25678999999
Q ss_pred cEEEEEeecCCcccccccCCCCcceEEEeccCceEEE-eccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002194 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (954)
Q Consensus 344 k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~-l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~ 422 (954)
++|++.......... .+......+++||+++++... +.... ....+..++|+|||+ +++.
T Consensus 104 ~~l~~~~~~~~~~~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~s~dg~-l~~~------ 164 (349)
T 1jmx_B 104 KEVYATVNPTQRLND-HYVVKPPRLEVFSTADGLEAKPVRTFP-----------MPRQVYLMRAADDGS-LYVA------ 164 (349)
T ss_dssp SEEEEEEEEEEECSS-CEEECCCEEEEEEGGGGGGBCCSEEEE-----------CCSSCCCEEECTTSC-EEEE------
T ss_pred CEEEEEccccccccc-ccccCCCeEEEEECCCccccceeeecc-----------CCCcccceeECCCCc-EEEc------
Confidence 999988743100000 000012489999988643211 11110 012345678999998 4442
Q ss_pred CCccccccCCCeEEEEecCCCCCCCceE-Eeeccc------------------------ccCceeeccCCceEEEEEecc
Q 002194 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEI-LHKLDL------------------------RYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~-l~~~~~------------------------~~~~~~~spDg~~l~~~~~~~ 477 (954)
...|+++++ .+++... +..... ....+++++|+.......
T Consensus 165 ---------~~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--- 229 (349)
T 1jmx_B 165 ---------GPDIYKMDV---KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA--- 229 (349)
T ss_dssp ---------SSSEEEECT---TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC---
T ss_pred ---------cCcEEEEeC---CCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc---
Confidence 123888885 4444333 221110 011123333332111100
Q ss_pred ccceEEEEEcCCCCCCCcEEEe-cCCCCCccCCCCCCCeeecc-CCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEE
Q 002194 478 TRRTRTWVISPGSKDVAPRILF-DRSSEDVYSDPGSPMMRRTS-TGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLD 555 (954)
Q Consensus 478 ~~~~~l~~~d~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 555 (954)
.....++.++..++. ...+. ........+ +.++| ||++++... ..|+
T Consensus 230 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~sp~dg~~l~~~~-----------------------~~v~ 278 (349)
T 1jmx_B 230 DLLYGYLSVDLKTGK--THTQEFADLTELYFT------GLRSPKDPNQIYGVL-----------------------NRLA 278 (349)
T ss_dssp EEEEEEEEEETTTCC--EEEEEEEECSSCEEE------EEECSSCTTEEEEEE-----------------------SEEE
T ss_pred ccceeEEEEeccCCc--EEecccccCCCccee------eEecCCCCCEEEEEc-----------------------CeEE
Confidence 011234446766642 22221 111111112 67899 999877651 1499
Q ss_pred EEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeE
Q 002194 556 LFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (954)
Q Consensus 556 ~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~ 623 (954)
+||+++++.......... . ...+|++||+++++. +. ...++++++.+++...
T Consensus 279 ~~d~~~~~~~~~~~~~~~-----~-------~~~~~s~dg~~l~~~--~~--~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 279 KYDLKQRKLIKAANLDHT-----Y-------YCVAFDKKGDKLYLG--GT--FNDLAVFNPDTLEKVK 330 (349)
T ss_dssp EEETTTTEEEEEEECSSC-----C-------CEEEECSSSSCEEEE--SB--SSEEEEEETTTTEEEE
T ss_pred EEECccCeEEEEEcCCCC-----c-------cceEECCCCCEEEEe--cC--CCeEEEEeccccceee
Confidence 999999887655443321 1 125789999988763 22 2789999988876443
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=138.59 Aligned_cols=197 Identities=13% Similarity=0.090 Sum_probs=121.0
Q ss_pred CccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHH
Q 002194 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAA 746 (954)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~a 746 (954)
+.|+||++||+.... ..| ...+..| +.+|.|++ .+..|+|.+.... .......+|+.++
T Consensus 19 ~~~~vv~~HG~~~~~-----------~~~----~~~~~~l-~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~ 79 (267)
T 3fla_A 19 ARARLVCLPHAGGSA-----------SFF----FPLAKAL-APAVEVLA---VQYPGRQDRRHEPPVDSIGGLTNRLLEV 79 (267)
T ss_dssp CSEEEEEECCTTCCG-----------GGG----HHHHHHH-TTTEEEEE---ECCTTSGGGTTSCCCCSHHHHHHHHHHH
T ss_pred CCceEEEeCCCCCCc-----------hhH----HHHHHHh-ccCcEEEE---ecCCCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 478999999963210 111 1234344 45699999 5566777764322 2344555555555
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc----ccEEEEeccCCCCCCCCCCCccc-cc-------------
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL----FCCGIARSGAYNRTLTPFGFQNE-DR------------- 808 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~~~~~~~~~~~~~~~~-~~------------- 808 (954)
++.+ +.+++.|+|||+||.+++.++.++|++ ++++|+.++.............. ..
T Consensus 80 l~~~------~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (267)
T 3fla_A 80 LRPF------GDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDDDVRGASDERLVAELRKLGGSD 153 (267)
T ss_dssp TGGG------TTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCCSCTTCCCHHHHHHHHHHTCHHH
T ss_pred HHhc------CCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccchhhcccchHHHHHHHHHhcCcc
Confidence 4443 346899999999999999999999986 88888887653221110000000 00
Q ss_pred -hhhhc--------------HHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002194 809 -TLWEA--------------TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (954)
Q Consensus 809 -~~~~~--------------~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (954)
....+ ...+..+.+... .++++|+|+++|++|..+| .....++.+.+.. +++++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~---~~~~~~~~g- 226 (267)
T 3fla_A 154 AAMLADPELLAMVLPAIRSDYRAVETYRHEPG-RRVDCPVTVFTGDHDPRVS--VGEARAWEEHTTG---PADLRVLPG- 226 (267)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHCCCCTT-CCBSSCEEEEEETTCTTCC--HHHHHGGGGGBSS---CEEEEEESS-
T ss_pred hhhccCHHHHHHHHHHHHHHHHhhhccccccc-CcCCCCEEEEecCCCCCCC--HHHHHHHHHhcCC---CceEEEecC-
Confidence 00000 011111221111 5678999999999999998 7777776655432 489999998
Q ss_pred CCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 874 SHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 874 ~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
+|... .++...+.+.|.+||++..
T Consensus 227 gH~~~-~~~~~~~~~~i~~fl~~~~ 250 (267)
T 3fla_A 227 GHFFL-VDQAAPMIATMTEKLAGPA 250 (267)
T ss_dssp STTHH-HHTHHHHHHHHHHHTC---
T ss_pred Cceee-ccCHHHHHHHHHHHhcccc
Confidence 99864 4556677777888877654
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-13 Score=141.08 Aligned_cols=190 Identities=11% Similarity=0.022 Sum_probs=116.5
Q ss_pred EEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 002194 672 CLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVV 751 (954)
Q Consensus 672 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~ 751 (954)
.||++||...... .|. .....| +.+|.|++ .|.+|+|.+.....+ .++ ..++.+.
T Consensus 15 ~vvllHG~~~~~~-----------~w~----~~~~~L-~~~~~vi~---~Dl~G~G~S~~~~~~---~~~---~~~~~l~ 69 (258)
T 1m33_A 15 HLVLLHGWGLNAE-----------VWR----CIDEEL-SSHFTLHL---VDLPGFGRSRGFGAL---SLA---DMAEAVL 69 (258)
T ss_dssp EEEEECCTTCCGG-----------GGG----GTHHHH-HTTSEEEE---ECCTTSTTCCSCCCC---CHH---HHHHHHH
T ss_pred eEEEECCCCCChH-----------HHH----HHHHHh-hcCcEEEE---eeCCCCCCCCCCCCc---CHH---HHHHHHH
Confidence 7889999642111 121 123344 46899999 677788887554211 111 2233343
Q ss_pred HcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC-CCCC-Cccc--------cc--------hhh--
Q 002194 752 RRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL-TPFG-FQNE--------DR--------TLW-- 811 (954)
Q Consensus 752 ~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~-~~~~-~~~~--------~~--------~~~-- 811 (954)
+. ++ +++.|+||||||.+|+.+|.++|++++++|++++...... ..+. .... .. ...
T Consensus 70 ~~--l~-~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (258)
T 1m33_A 70 QQ--AP-DKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLAL 146 (258)
T ss_dssp TT--SC-SSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HH--hC-CCeEEEEECHHHHHHHHHHHHhhHhhceEEEECCCCCccccccccCCCHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33 34 6899999999999999999999999999999876421110 0000 0000 00 000
Q ss_pred ---------hcHH----------------------HHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHh
Q 002194 812 ---------EATS----------------------TYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (954)
Q Consensus 812 ---------~~~~----------------------~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~ 860 (954)
...+ .+...+....+.++++|+|+++|++|..+| ...++.+.+.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~-- 222 (258)
T 1m33_A 147 QTMGTETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVP--RKVVPMLDKLW-- 222 (258)
T ss_dssp TSTTSTTHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSC--GGGCC-CTTTC--
T ss_pred HhcCCccchhhHHHHHHHHHhccCCcHHHHHHHHHHHHhCCHHHHHhhCCCCEEEEeecCCCCCC--HHHHHHHHHhC--
Confidence 0000 001112223456789999999999999988 77665554433
Q ss_pred CCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 861 HGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 861 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.+.++++++++||... .+..+.+.+.|.+|+.+
T Consensus 223 --~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 255 (258)
T 1m33_A 223 --PHSESYIFAKAAHAPF-ISHPAEFCHLLVALKQR 255 (258)
T ss_dssp --TTCEEEEETTCCSCHH-HHSHHHHHHHHHHHHTT
T ss_pred --ccceEEEeCCCCCCcc-ccCHHHHHHHHHHHHHh
Confidence 2358899999999864 45567788888888864
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-13 Score=154.60 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=54.5
Q ss_pred cccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC-CCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP-FESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 824 ~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
..+.++++|+|+++|++|..+| ++.++++.+.+. ++++++++ ++||... .+....+.+.|.+||++++
T Consensus 375 ~~l~~i~~PvLvi~G~~D~~~p--~~~~~~l~~~~p----~~~~~~i~~~~GH~~~-~e~p~~~~~~i~~fL~~~l 443 (444)
T 2vat_A 375 EALAMITQPALIICARSDGLYS--FDEHVEMGRSIP----NSRLCVVDTNEGHDFF-VMEADKVNDAVRGFLDQSL 443 (444)
T ss_dssp HHHTTCCSCEEEEECTTCSSSC--HHHHHHHHHHST----TEEEEECCCSCGGGHH-HHTHHHHHHHHHHHHTC--
T ss_pred HHhhcCCCCEEEEEeCCCCCCC--HHHHHHHHHHCC----CcEEEEeCCCCCcchH-HhCHHHHHHHHHHHHHHhc
Confidence 4467889999999999999998 888888877764 36999999 8999864 4556778888889987654
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.8e-13 Score=143.26 Aligned_cols=212 Identities=16% Similarity=0.107 Sum_probs=134.4
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+++....-+ ++.|.||++||.+.... .|. .....| +.+|.|++ .|.+|+
T Consensus 14 ~~g~~l~y~~~G~--------g~~~pvvllHG~~~~~~-----------~w~----~~~~~L-~~~~~via---~Dl~G~ 66 (316)
T 3afi_E 14 VLGSSMAYRETGA--------QDAPVVLFLHGNPTSSH-----------IWR----NILPLV-SPVAHCIA---PDLIGF 66 (316)
T ss_dssp ETTEEEEEEEESC--------TTSCEEEEECCTTCCGG-----------GGT----TTHHHH-TTTSEEEE---ECCTTS
T ss_pred eCCEEEEEEEeCC--------CCCCeEEEECCCCCchH-----------HHH----HHHHHH-hhCCEEEE---ECCCCC
Confidence 3677777665421 22358999999753211 121 123344 45699999 677788
Q ss_pred CCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC---CCCC-
Q 002194 727 GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR---TLTP- 800 (954)
Q Consensus 727 G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~---~~~~- 800 (954)
|.+..+. .......+|+.+.++.+ +.+++.|+||||||.+|+.+|.++|++++++|++++.... ....
T Consensus 67 G~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~ 140 (316)
T 3afi_E 67 GQSGKPDIAYRFFDHVRYLDAFIEQR------GVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFIRPMPTWQDFHH 140 (316)
T ss_dssp TTSCCCSSCCCHHHHHHHHHHHHHHT------TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEECCCBSSGGGTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHc------CCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeeccCCCcchhhhccc
Confidence 8885432 23455666766666654 2368999999999999999999999999999998863210 0000
Q ss_pred -------------------CCCcc------------------c--cchh-hhcHHHHHh-----------------cCc-
Q 002194 801 -------------------FGFQN------------------E--DRTL-WEATSTYVE-----------------MSP- 822 (954)
Q Consensus 801 -------------------~~~~~------------------~--~~~~-~~~~~~~~~-----------------~sp- 822 (954)
+.... . .... .+..+.|.. ...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (316)
T 3afi_E 141 TEVAEEQDHAEAARAVFRKFRTPGEGEAMILEANAFVERVLPGGIVRKLGDEEMAPYRTPFPTPESRRPVLAFPRELPIA 220 (316)
T ss_dssp CCCGGGHHHHHHHHHHHHHHTSTTHHHHHHTTSCHHHHTTTGGGCSSCCCHHHHHHHHTTCCSTGGGHHHHHTGGGSCBT
T ss_pred hhhccccccchhHHHHHHHhcCCchhhHHHhccchHHHHhcccccCCCCCHHHHHHHHhhcCCccchhHHHHHHHhcccc
Confidence 00000 0 0000 000000100 000
Q ss_pred -------------ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHH
Q 002194 823 -------------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889 (954)
Q Consensus 823 -------------~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~ 889 (954)
...+.++++|+|+++|++|..+| .+.++++.+.+. ..++++++++||... .+....+.+.
T Consensus 221 ~~~~~~~~~~~~~~~~l~~i~~P~Lvi~G~~D~~~~--~~~~~~~~~~~p----~~~~~~i~~~GH~~~-~e~p~~~~~~ 293 (316)
T 3afi_E 221 GEPADVYEALQSAHAALAASSYPKLLFTGEPGALVS--PEFAERFAASLT----RCALIRLGAGLHYLQ-EDHADAIGRS 293 (316)
T ss_dssp TBSHHHHHHHHHHHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHHHSS----SEEEEEEEEECSCHH-HHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHhhhccCCCeEEEecCCCCccC--HHHHHHHHHhCC----CCeEEEcCCCCCCch-hhCHHHHHHH
Confidence 01123578999999999999988 777777766553 368999999999864 5667788899
Q ss_pred HHHHHHHhc
Q 002194 890 TDRWLQKYC 898 (954)
Q Consensus 890 i~~fl~~~l 898 (954)
|.+||.+..
T Consensus 294 i~~fl~~~~ 302 (316)
T 3afi_E 294 VAGWIAGIE 302 (316)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcC
Confidence 999998764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=133.16 Aligned_cols=247 Identities=12% Similarity=0.122 Sum_probs=148.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++||..+.+ ..|.||++... +......+.++ ..
T Consensus 11 ~V~~~~~s~~g~~las~s~D---------------------------------~~v~iw~~~~~-~~~~~~~l~gH--~~ 54 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSD---------------------------------KTIKIFEVEGE-THKLIDTLTGH--EG 54 (297)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SCEEEEEBCSS-CBCCCEEECCC--SS
T ss_pred ceEEEEECCCCCEEEEEeCC---------------------------------CEEEEEecCCC-CcEEEEEEccc--cC
Confidence 45678999999999998876 57999998531 11122344432 24
Q ss_pred cccceeecCC--CCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecC--CeEEEEEecCC
Q 002194 190 KLNFVTWSQD--GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN--STLLVCTIPLL 265 (954)
Q Consensus 190 ~~~~~~wSPD--G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD--G~~l~~~~~~~ 265 (954)
.+..+.|+|+ |+.|+..+. ...|.++|+++++...+..... ....+..++|+|+ |+.|+...
T Consensus 55 ~V~~v~~s~~~~g~~l~s~s~---------D~~v~iWd~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~g~~l~s~s--- 120 (297)
T 2pm7_B 55 PVWRVDWAHPKFGTILASCSY---------DGKVMIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPMLLVAS--- 120 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEET---------TTEEEEEEBSSSCBCCCEEECC--CSSCEEEEEECCGGGCSEEEEEE---
T ss_pred CeEEEEecCCCcCCEEEEEcC---------CCEEEEEEcCCCceEEEEEeec--CCCceeEEEeCcCCCCcEEEEEE---
Confidence 6888999874 888877552 4567777877764322211110 1112678999998 78887651
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc---eeEcCCC-ccccccccC
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLDPS 340 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~---~~~l~~~-~~~~~~~~S 340 (954)
....|.++++ ++. ...+... ..+..++|+
T Consensus 121 ----------------------------------------------~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~ 154 (297)
T 2pm7_B 121 ----------------------------------------------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 154 (297)
T ss_dssp ----------------------------------------------TTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEEC
T ss_pred ----------------------------------------------CCCcEEEEEecCCCceeeeeeecccCccceEeec
Confidence 1234556666 432 2223233 567788999
Q ss_pred CC-------------CcEEEEEeecCCcccccccCCCCcceEEEeccCce--EEEeccCCCcccCCccccccccCcccee
Q 002194 341 PD-------------EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (954)
Q Consensus 341 pD-------------Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~ 405 (954)
|+ ++.|+..+.+ +.|.+||++.+. ...+.... ++...+..++
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D-------------~~v~lwd~~~~~~~~~~~~~l~----------~H~~~V~~v~ 211 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGAD-------------NLVKIWKYNSDAQTYVLESTLE----------GHSDWVRDVA 211 (297)
T ss_dssp CCC------------CCEEEEEETT-------------SCEEEEEEETTTTEEEEEEEEC----------CCSSCEEEEE
T ss_pred CCcccccccCCCCCCcceEEEEcCC-------------CcEEEEEEcCCCceEEEEEEec----------CCCCceEEEE
Confidence 97 4677776633 389999987542 11111111 2224567899
Q ss_pred eccCC---CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCce-EE--eecccccCceeeccCCceEEEEEecccc
Q 002194 406 WRSDK---PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-IL--HKLDLRYGGISWCDDSLALVYESWYKTR 479 (954)
Q Consensus 406 wspDg---~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~-~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (954)
|+||+ +.++.. +..+.|.+|+++...+.... .+ ......+..++|+|||+.|+..+.++.
T Consensus 212 ~sp~~~~~~~las~-------------s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~- 277 (297)
T 2pm7_B 212 WSPTVLLRSYMASV-------------SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK- 277 (297)
T ss_dssp ECCCCSSSEEEEEE-------------ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSC-
T ss_pred ECCCCCCceEEEEE-------------ECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCc-
Confidence 99997 333322 33457888886111111111 22 123445677899999999998876543
Q ss_pred ceEEEEEcCCC
Q 002194 480 RTRTWVISPGS 490 (954)
Q Consensus 480 ~~~l~~~d~~~ 490 (954)
.+||..+..+
T Consensus 278 -v~lw~~~~~g 287 (297)
T 2pm7_B 278 -VTLWKENLEG 287 (297)
T ss_dssp -EEEEEECTTS
T ss_pred -EEEEEECCCC
Confidence 7888876553
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=141.57 Aligned_cols=196 Identities=14% Similarity=0.025 Sum_probs=124.3
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHC--CcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR--GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAV 747 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av 747 (954)
.|.||++||..... ..| ......|+++ ||.|+. .+..|+|.+.... ...++|+.+.+
T Consensus 36 ~~~vvllHG~~~~~-----------~~~----~~~~~~L~~~~~g~~vi~---~D~~G~G~s~~~~---~~~~~~~~~~l 94 (302)
T 1pja_A 36 YKPVIVVHGLFDSS-----------YSF----RHLLEYINETHPGTVVTV---LDLFDGRESLRPL---WEQVQGFREAV 94 (302)
T ss_dssp CCCEEEECCTTCCG-----------GGG----HHHHHHHHHHSTTCCEEE---CCSSCSGGGGSCH---HHHHHHHHHHH
T ss_pred CCeEEEECCCCCCh-----------hHH----HHHHHHHHhcCCCcEEEE---eccCCCccchhhH---HHHHHHHHHHH
Confidence 57889999963211 111 2356677888 999999 6677887765432 23456666666
Q ss_pred HHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC-cccEEEEeccCCCCCCCCCCC-----cc----------------
Q 002194 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLTPFGF-----QN---------------- 805 (954)
Q Consensus 748 ~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~~~~~~~~~~-----~~---------------- 805 (954)
..+.+.. .+++.++||||||.+++.++.++|+ +++++|++++..........+ ..
T Consensus 95 ~~~~~~~---~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (302)
T 1pja_A 95 VPIMAKA---PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQ 171 (302)
T ss_dssp HHHHHHC---TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCTTCBCSCCHHHHHHCTTCCHHHHHHHHTSTTGG
T ss_pred HHHhhcC---CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCcccccccchhhhhHHHHHHHHHHhhccchHHHH
Confidence 6665553 3689999999999999999999998 799999998764321110000 00
Q ss_pred --ccchhhhc---HHHHHhcC-----------------cccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHH------
Q 002194 806 --EDRTLWEA---TSTYVEMS-----------------PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA------ 857 (954)
Q Consensus 806 --~~~~~~~~---~~~~~~~s-----------------p~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~------ 857 (954)
.....|.. .+.+.... ....+.+++ |+|+++|++|..+| +..+..+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~-P~lii~G~~D~~v~--~~~~~~~~~~~~~~~~ 248 (302)
T 1pja_A 172 EFSICNYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVG-HLVLIGGPDDGVIT--PWQSSFFGFYDANETV 248 (302)
T ss_dssp GSTGGGGBCCTTCHHHHHHHCSSHHHHTTSSCCTTHHHHHHHHTTCS-EEEEEECTTCSSSS--SGGGGGTCEECTTCCE
T ss_pred HhhhhhcccChhhhhhhhccchHHHHhhcCCccccchhHHHHHhccC-cEEEEEeCCCCccc--hhHhhHhhhcCCcccc
Confidence 00000100 01110000 022456788 99999999999998 7777665321
Q ss_pred ------------------HHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 858 ------------------LKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 858 ------------------l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
+... .+++++++|++||... .+..+.+.+.+.+||
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl 301 (302)
T 1pja_A 249 LEMEEQLVYLRDSFGLKTLLAR-GAIVRCPMAGISHTAW-HSNRTLYETCIEPWL 301 (302)
T ss_dssp ECGGGSHHHHTTTTSHHHHHHT-TCEEEEECSSCCTTTT-TSCHHHHHHHTGGGC
T ss_pred cchhhhhhhhhhhhchhhHhhc-CCeEEEEecCcccccc-ccCHHHHHHHHHHhc
Confidence 2122 2389999999999864 455667777776664
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-12 Score=140.38 Aligned_cols=226 Identities=13% Similarity=0.095 Sum_probs=145.2
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc---eeecccCCCccccccccceeEecCCeEEEEEecCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK---ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~---~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~ 265 (954)
..+..++|+|||+.|++.. ....|+++++++++ ...+..... .+..+.|+|||+.|+...
T Consensus 9 ~~i~~~~~s~~~~~l~~~~---------~d~~v~i~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~~~~--- 71 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICP---------NNHEVHIYEKSGNKWVQVHELKEHNG-----QVTGVDWAPDSNRIVTCG--- 71 (372)
T ss_dssp SCCCEEEECTTSSEEEEEC---------SSSEEEEEEEETTEEEEEEEEECCSS-----CEEEEEEETTTTEEEEEE---
T ss_pred CCeEEEEECCCCCEEEEEe---------CCCEEEEEeCCCCcEEeeeeecCCCC-----cccEEEEeCCCCEEEEEc---
Confidence 3688899999999998853 25578888888875 333332222 277899999999998761
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee---EcCCC-ccccccccC
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK---EIGPP-AVYTSLDPS 340 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~---~l~~~-~~~~~~~~S 340 (954)
....|.++++ +++.. .+... ..+..++|+
T Consensus 72 ----------------------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 105 (372)
T 1k8k_C 72 ----------------------------------------------TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 105 (372)
T ss_dssp ----------------------------------------------TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC
T ss_pred ----------------------------------------------CCCeEEEEECCCCeeeeeEEeecCCCceeEEEEC
Confidence 1234667777 66422 22333 678889999
Q ss_pred CCCcEEEEEeecCCcccccccCCCCcceEEEeccCce----EEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002194 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 341 pDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~----~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~ 416 (954)
|||++|+..+.+ +.+.+|+++.+. .+.+.. .....+..+.|+||++.++..
T Consensus 106 ~~~~~l~~~~~d-------------~~v~i~d~~~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~l~~~ 160 (372)
T 1k8k_C 106 PNEKKFAVGSGS-------------RVISICYFEQENDWWVCKHIKK------------PIRSTVLSLDWHPNSVLLAAG 160 (372)
T ss_dssp TTSSEEEEEETT-------------SSEEEEEEETTTTEEEEEEECT------------TCCSCEEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEeCC-------------CEEEEEEecCCCcceeeeeeec------------ccCCCeeEEEEcCCCCEEEEE
Confidence 999999988743 378999998654 122211 112345689999999866654
Q ss_pred EEeccCCCccccccCCCeEEEEecCC----------------CCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 417 AETQDGGDAKVEVTPRDIIYTQQAEP----------------VQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
+..+.+.+|++.. ..+.....+..+...+..+.|+|||+.|+....++
T Consensus 161 -------------~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--- 224 (372)
T 1k8k_C 161 -------------SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS--- 224 (372)
T ss_dssp -------------ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT---
T ss_pred -------------cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC---
Confidence 3345788888410 01222233345566678899999999888876443
Q ss_pred eEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEE
Q 002194 481 TRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (954)
Q Consensus 481 ~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 527 (954)
.|.++|+.++ +.......+...+.. +.|+|||++++..
T Consensus 225 -~i~i~d~~~~--~~~~~~~~~~~~v~~------~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 225 -TVCLADADKK--MAVATLASETLPLLA------VTFITESSLVAAG 262 (372)
T ss_dssp -EEEEEEGGGT--TEEEEEECSSCCEEE------EEEEETTEEEEEE
T ss_pred -EEEEEECCCC--ceeEEEccCCCCeEE------EEEecCCCEEEEE
Confidence 3556666554 333333333333333 7899999877655
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-11 Score=135.64 Aligned_cols=273 Identities=8% Similarity=-0.046 Sum_probs=139.6
Q ss_pred ceEEEEccCCCCCCceeeeecC--CCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECC-CCceeecccCCCc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGF--PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-TGKARPLFQSPDI 240 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~--~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~-~g~~~~lt~~~~~ 240 (954)
.|+++.+..+. ++.+.+... ........++|||||++|+.+.. . .|.+++++ +|+..++......
T Consensus 15 ~i~~~~~d~~~--g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~---------~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 15 AIFTVQFDDEK--LTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM---------K-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEEEETTT--TEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB---------T-EEEEEEEEETTEEEEEEEEECC
T ss_pred cEEEEEEECCC--CCEEEeeEEccCCCCCCcEEEECCCCCEEEEEcc---------c-eEEEEEECCCCCEEEeeEeecC
Confidence 57777663222 444444321 11125778899999998876542 1 67777765 6666544322110
Q ss_pred cccccccceeEecCCeEE-EEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEE
Q 002194 241 YLNAIFDNFVWVNNSTLL-VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (954)
Q Consensus 241 ~~~~~~~~~~wspDG~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~ 319 (954)
. ....++|+|||+.| +++... +. +....+. .+.....+.++
T Consensus 83 g---~~~~~~~spdg~~l~~~~~~~--~~------------------------------~~~~~~~---~~~~~g~v~v~ 124 (365)
T 1jof_A 83 G---HPRANDADTNTRAIFLLAAKQ--PP------------------------------YAVYANP---FYKFAGYGNVF 124 (365)
T ss_dssp S---SGGGGCTTSCCEEEEEEECSS--TT------------------------------CCEEEEE---ESSSCCEEEEE
T ss_pred C---CCccEEECCCCCEEEEEEecC--Cc------------------------------ceeccce---eecCCceEEEE
Confidence 0 13468899999964 333110 00 0000000 00001223444
Q ss_pred Ee--CCcee-EcC-----CCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc-CceEEEeccCCCcccC
Q 002194 320 SL--DGTVK-EIG-----PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDI 390 (954)
Q Consensus 320 ~~--~G~~~-~l~-----~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~-g~~~~~l~~~~~~~~~ 390 (954)
++ +|+.. .+. .......++|||||++|++.... ...|++|+++ +++.+.+......
T Consensus 125 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~------------~~~v~~~~~~~~g~~~~~~~~~~~--- 189 (365)
T 1jof_A 125 SVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT------------ANKLWTHRKLASGEVELVGSVDAP--- 189 (365)
T ss_dssp EECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTSCEEEEEEEECS---
T ss_pred ccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC------------CCEEEEEEECCCCCEEEeeeEecC---
Confidence 44 45432 222 12456788999999998765422 1379999998 5655433221100
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCce----EEeec--c----c----
Q 002194 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE----ILHKL--D----L---- 456 (954)
Q Consensus 391 p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~----~l~~~--~----~---- 456 (954)
....+++.++|||||+.+++. .. ..+.+.+++.++ .+++.. .+... . .
T Consensus 190 -----~~g~~p~~~~~spdg~~l~v~-~~-----------~~~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~ 251 (365)
T 1jof_A 190 -----DPGDHPRWVAMHPTGNYLYAL-ME-----------AGNRICEYVIDP-ATHMPVYTHHSFPLIPPGIPDRDPETG 251 (365)
T ss_dssp -----STTCCEEEEEECTTSSEEEEE-ET-----------TTTEEEEEEECT-TTCCEEEEEEEEESSCTTCCCBCTTTS
T ss_pred -----CCCCCCCEeEECCCCCEEEEE-EC-----------CCCeEEEEEEeC-CCCcEEEccceEEcCCCCcCCcccccc
Confidence 001345789999999977554 11 123555555422 233332 12111 1 1
Q ss_pred ---ccCcee-eccCCceEEEEEecccc----ceEEEEEcCCCCCCCcEEE---ecCCCCCccCCCCCCCeeecc---CCc
Q 002194 457 ---RYGGIS-WCDDSLALVYESWYKTR----RTRTWVISPGSKDVAPRIL---FDRSSEDVYSDPGSPMMRRTS---TGT 522 (954)
Q Consensus 457 ---~~~~~~-~spDg~~l~~~~~~~~~----~~~l~~~d~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~sp---dG~ 522 (954)
....++ |||||++|+.+....+. ...+|.++. ++ +...+ .......... ++|+| ||+
T Consensus 252 ~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~-~g--~~~~~~~~~~~~~~~~~~------~a~sp~~~dg~ 322 (365)
T 1jof_A 252 KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-CG--SIEKQLFLSPTPTSGGHS------NAVSPCPWSDE 322 (365)
T ss_dssp SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-TS--CEEEEEEEEECSSCCTTC------CCEEECTTCTT
T ss_pred cccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC-CC--CEEEeeeeeecCCCCccc------ceecCCCcCCC
Confidence 355688 99999988655432210 355666653 33 33321 1111111111 67899 899
Q ss_pred EEEEEE
Q 002194 523 YVIAKI 528 (954)
Q Consensus 523 ~l~~~~ 528 (954)
+|+...
T Consensus 323 ~l~v~~ 328 (365)
T 1jof_A 323 WMAITD 328 (365)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 987765
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.43 E-value=7.3e-12 Score=141.09 Aligned_cols=271 Identities=14% Similarity=0.049 Sum_probs=160.9
Q ss_pred eceEEEEccCCCCCCc-eeeeecCCCCCcccceeecC-CCCeEEEEEeeccccCCCCceEEEEEECCCCc-------e-e
Q 002194 163 TGIGIHQLFPDGKLGQ-EIEIQGFPDGAKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-------A-R 232 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~-~~~lt~~~~~~~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~-------~-~ 232 (954)
+.|.||++...+.... ...+.+ +...+..+.|+| |++.|+.... ...|.++++.++. . .
T Consensus 57 g~i~v~~~~~~~~~~~~~~~~~~--h~~~V~~~~~~p~~~~~l~s~s~---------dg~v~vw~~~~~~~~~~~~~~~~ 125 (402)
T 2aq5_A 57 GAFLVLPLGKTGRVDKNVPLVCG--HTAPVLDIAWCPHNDNVIASGSE---------DCTVMVWEIPDGGLVLPLREPVI 125 (402)
T ss_dssp CCEEEEETTCCEECCTTCCCBCC--CSSCEEEEEECTTCTTEEEEEET---------TSEEEEEECCTTCCSSCBCSCSE
T ss_pred CEEEEEECccCCCCCCCCceEec--CCCCEEEEEeCCCCCCEEEEEeC---------CCeEEEEEccCCCCccccCCceE
Confidence 4789999854332111 112222 234789999999 8888877542 4567777777653 2 2
Q ss_pred ecccCCCccccccccceeEecCC-eEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCcccccccccc
Q 002194 233 PLFQSPDIYLNAIFDNFVWVNNS-TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYY 311 (954)
Q Consensus 233 ~lt~~~~~~~~~~~~~~~wspDG-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~ 311 (954)
.+..+.. .+..+.|+||| ++|+...
T Consensus 126 ~~~~h~~-----~v~~~~~~p~~~~~l~s~~------------------------------------------------- 151 (402)
T 2aq5_A 126 TLEGHTK-----RVGIVAWHPTAQNVLLSAG------------------------------------------------- 151 (402)
T ss_dssp EEECCSS-----CEEEEEECSSBTTEEEEEE-------------------------------------------------
T ss_pred EecCCCC-----eEEEEEECcCCCCEEEEEc-------------------------------------------------
Confidence 2222222 26789999999 4666541
Q ss_pred ccceEEEEEe-CCce-eEc--CCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEe-ccC
Q 002194 312 ATTQLVLVSL-DGTV-KEI--GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-REL-CDL 384 (954)
Q Consensus 312 ~~~~l~~~~~-~G~~-~~l--~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l-~~~ 384 (954)
....|.++|+ +++. ..+ ... ..+..++|+|||+.|+..+.+ +.+.+||+..++. ..+ ..+
T Consensus 152 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~ 218 (402)
T 2aq5_A 152 CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-------------KRVRVIEPRKGTVVAEKDRPH 218 (402)
T ss_dssp TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-------------SEEEEEETTTTEEEEEEECSS
T ss_pred CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC-------------CcEEEEeCCCCceeeeeccCC
Confidence 1234778888 6653 344 333 778899999999999988743 3899999986554 333 221
Q ss_pred CCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE-e-ecccccCcee
Q 002194 385 PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-H-KLDLRYGGIS 462 (954)
Q Consensus 385 ~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~-~~~~~~~~~~ 462 (954)
.. ..+..+.|+|||+.++.... .+..+.|.+|++ ..+..+..+ . .....+..+.
T Consensus 219 ~~------------~~~~~~~~~~~~~~l~~g~~----------~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~ 274 (402)
T 2aq5_A 219 EG------------TRPVHAVFVSEGKILTTGFS----------RMSERQVALWDT--KHLEEPLSLQELDTSSGVLLPF 274 (402)
T ss_dssp CS------------SSCCEEEECSTTEEEEEEEC----------TTCCEEEEEEET--TBCSSCSEEEECCCCSSCEEEE
T ss_pred CC------------CcceEEEEcCCCcEEEEecc----------CCCCceEEEEcC--ccccCCceEEeccCCCceeEEE
Confidence 10 12457899999985444311 023558899996 233332222 2 3445567899
Q ss_pred eccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecC-CCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEe
Q 002194 463 WCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR-SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLN 541 (954)
Q Consensus 463 ~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~ 541 (954)
|+|||+.|+.+...++ ..++|.+. ++......+... ....+.. +.|+|||..++...
T Consensus 275 ~s~~~~~l~~~g~~dg-~i~i~d~~--~~~~~~~~l~~~~~~~~v~~------~~~sp~~~~~~s~~------------- 332 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDS-SIRYFEIT--SEAPFLHYLSMFSSKESQRG------MGYMPKRGLEVNKC------------- 332 (402)
T ss_dssp EETTTTEEEEEETTCS-CEEEEEEC--SSTTCEEEEEEECCSSCCSE------EEECCGGGSCGGGT-------------
T ss_pred EcCCCCEEEEEEcCCC-eEEEEEec--CCCcceEeecccccCCcccc------eEEecccccceecc-------------
Confidence 9999999987765443 25555554 431112223221 1222233 88999998764211
Q ss_pred cCCCCCCCCCCeEEEEECCCCCeEEE
Q 002194 542 GNGATPEGNIPFLDLFDINTGSKERI 567 (954)
Q Consensus 542 ~~~~~~~~~~~~l~~~d~~~g~~~~l 567 (954)
..+.+|++.+++.+.+
T Consensus 333 ----------~~~~~~~l~~~~~~~i 348 (402)
T 2aq5_A 333 ----------EIARFYKLHERKCEPI 348 (402)
T ss_dssp ----------EEEEEEEEETTEEEEE
T ss_pred ----------eeEEEEEcCCCcEEEE
Confidence 1377788877766554
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-11 Score=134.44 Aligned_cols=250 Identities=9% Similarity=-0.013 Sum_probs=154.8
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc-------eeecccCCCccccccccceeEecC----C--
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-------ARPLFQSPDIYLNAIFDNFVWVNN----S-- 255 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~-------~~~lt~~~~~~~~~~~~~~~wspD----G-- 255 (954)
..+....|+| +.|+... ....|.++++++++ ...+...... +..+.|+|| |
T Consensus 17 ~~i~~~~~~~--~~l~s~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 17 ADIFSVSACN--SFTVSCS---------GDGYLKVWDNKLLDNENPKDKSYSHFVHKSG-----LHHVDVLQAIERDAFE 80 (397)
T ss_dssp SCEEEEEECS--SEEEEEE---------TTSEEEEEESBCCTTCCGGGGEEEEECCTTC-----EEEEEEEEEEETTTEE
T ss_pred cCeEEEEecC--CeEEEEc---------CCCEEEEEECCCcccccCCCcceEEecCCCc-----EEEEEEecccccCCcc
Confidence 4688899999 6666654 24678888888876 3444322222 678999999 9
Q ss_pred -eEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc------eeE
Q 002194 256 -TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT------VKE 327 (954)
Q Consensus 256 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~------~~~ 327 (954)
+.|+... ....|.++++ +++ ...
T Consensus 81 ~~~l~s~~-------------------------------------------------~dg~i~iw~~~~~~~~~~~~~~~ 111 (397)
T 1sq9_A 81 LCLVATTS-------------------------------------------------FSGDLLFYRITREDETKKVIFEK 111 (397)
T ss_dssp EEEEEEEE-------------------------------------------------TTSCEEEEEEEECTTTCCEEEEE
T ss_pred ccEEEEEc-------------------------------------------------CCCCEEEEEccCCccccccccee
Confidence 8888761 1133666666 444 455
Q ss_pred cCCC------ccccccccC----CCCcE-EEEEeecCCcccccccCCCCcceEEEeccC------ceE-E-----EeccC
Q 002194 328 IGPP------AVYTSLDPS----PDEKY-ILISSIHRPYSFIVPCGRFPRQVGVWTTDG------IFV-R-----ELCDL 384 (954)
Q Consensus 328 l~~~------~~~~~~~~S----pDGk~-l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g------~~~-~-----~l~~~ 384 (954)
+... ..+..++|+ |||+. |+..+.+ +.+.+||+.. +.. . .+...
T Consensus 112 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 178 (397)
T 1sq9_A 112 LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-------------GTTYIWKFHPFADESNSLTLNWSPTLELQGT 178 (397)
T ss_dssp ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-------------SCEEEEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred ecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-------------CcEEEEeCCccccccccceeeccCcceeeee
Confidence 5443 567789999 99999 7777633 3899999886 321 1 11100
Q ss_pred CCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEee---c---ccc
Q 002194 385 PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHK---L---DLR 457 (954)
Q Consensus 385 ~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~---~---~~~ 457 (954)
.. ........+..++|+||| .++.. ...+.|.+|++ ..++. ..+.. + ...
T Consensus 179 ---~~---~~~~~~~~i~~~~~~~~~-~l~~~-------------~~dg~i~i~d~---~~~~~~~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 179 ---VE---SPMTPSQFATSVDISERG-LIATG-------------FNNGTVQISEL---STLRPLYNFESQHSMINNSNS 235 (397)
T ss_dssp ---EC---CSSSSCCCCCEEEECTTS-EEEEE-------------CTTSEEEEEET---TTTEEEEEEECCC---CCCCC
T ss_pred ---ec---cccCCCCCceEEEECCCc-eEEEE-------------eCCCcEEEEEC---CCCceeEEEeccccccccCCc
Confidence 00 000112445789999999 44443 34568999996 33333 33444 4 667
Q ss_pred cCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecC-------------CCCCccCCCCCCCeeeccCCcEE
Q 002194 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR-------------SSEDVYSDPGSPMMRRTSTGTYV 524 (954)
Q Consensus 458 ~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~-------------~~~~~~~~~~~~~~~~spdG~~l 524 (954)
+..++|+||++.|+....++. ...|.++|+.++ +....... ....+.. +.|+|||++|
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~-~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~l 306 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNS-FGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSSWVMS------LSFNDSGETL 306 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETT-EEEEEEEETTTC--CEEEEECBC--------CCBSBSSCEEE------EEECSSSSEE
T ss_pred cceEEECCCCCEEEEEecCCC-CceEEEEECCCC--cccceeccCcccccccccccccCCcEEE------EEECCCCCEE
Confidence 888999999999988765421 135777777764 33333332 2222333 7899999988
Q ss_pred EEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEec
Q 002194 525 IAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (954)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 569 (954)
+.... ...|++||+.+++......
T Consensus 307 ~~~~~---------------------dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 307 CSAGW---------------------DGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEEET---------------------TSEEEEEETTTTEEEEEEE
T ss_pred EEEeC---------------------CCeEEEEEcCCCceeEEEe
Confidence 87652 2359999999887665554
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-11 Score=134.54 Aligned_cols=281 Identities=11% Similarity=0.119 Sum_probs=177.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
......|++ +.++.... ...|+++++++++...+...... ..+..++|+|||+.|++..
T Consensus 95 ~~~~~~~s~--~~l~~~~~---------d~~v~lw~~~~~~~~~~~~~~~~---~~v~~v~~s~~~~~l~~~~------- 153 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVAL---------ERNVYVWNADSGSVSALAETDES---TYVASVKWSHDGSFLSVGL------- 153 (401)
T ss_dssp TCBCEEECT--TSEEEEEE---------TTEEEEEETTTCCEEEEEECCTT---CCEEEEEECTTSSEEEEEE-------
T ss_pred eEEEEeecC--CCEEEEEC---------CCeEEEeeCCCCcEeEeeecCCC---CCEEEEEECCCCCEEEEEC-------
Confidence 455677775 44555442 56799999999887766554221 1277899999999998761
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~-~~~~~~~~SpDGk~l 346 (954)
..+.|.++++ +++ ...+... ..+..++| +++.|
T Consensus 154 ------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l 189 (401)
T 4aez_A 154 ------------------------------------------GNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVL 189 (401)
T ss_dssp ------------------------------------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEE
T ss_pred ------------------------------------------CCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEE
Confidence 1234677787 554 4444444 66777778 56777
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccC-c-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDG-I-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
+..+.+ +.+.+||+.. + ....+..+. ..+..+.|+|||+.++..
T Consensus 190 ~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~s~-------- 235 (401)
T 4aez_A 190 SSGSRS-------------GAIHHHDVRIANHQIGTLQGHS-------------SEVCGLAWRSDGLQLASG-------- 235 (401)
T ss_dssp EEEETT-------------SEEEEEETTSSSCEEEEEECCS-------------SCEEEEEECTTSSEEEEE--------
T ss_pred EEEcCC-------------CCEEEEecccCcceeeEEcCCC-------------CCeeEEEEcCCCCEEEEE--------
Confidence 777633 3899999983 3 233333321 345679999999876665
Q ss_pred ccccccCCCeEEEEecCCCCCCC-ceEEeecccccCceeeccCCceEEEEEe--ccccceEEEEEcCCCCCCCcEEEecC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESW--YKTRRTRTWVISPGSKDVAPRILFDR 501 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~--~~~~~~~l~~~d~~~~~~~~~~l~~~ 501 (954)
+..+.|.+|++ ..++ ...+..+...+..++|+|++..+++... .+ ..|.++|+.++ +.......
T Consensus 236 -----~~d~~v~iwd~---~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d---~~i~i~d~~~~--~~~~~~~~ 302 (401)
T 4aez_A 236 -----GNDNVVQIWDA---RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMD---KQIHFWNAATG--ARVNTVDA 302 (401)
T ss_dssp -----ETTSCEEEEET---TCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTT---CEEEEEETTTC--CEEEEEEC
T ss_pred -----eCCCeEEEccC---CCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCC---CEEEEEECCCC--CEEEEEeC
Confidence 33568999996 4333 3445566777889999999988887754 23 35777777765 33333322
Q ss_pred CCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEE
Q 002194 502 SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVA 581 (954)
Q Consensus 502 ~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 581 (954)
. ..+.. +.|+|+|+.++..... ....|++||+.+++...+..-.+..
T Consensus 303 ~-~~v~~------~~~s~~~~~l~~~~g~-------------------~dg~i~v~~~~~~~~~~~~~~~~h~------- 349 (401)
T 4aez_A 303 G-SQVTS------LIWSPHSKEIMSTHGF-------------------PDNNLSIWSYSSSGLTKQVDIPAHD------- 349 (401)
T ss_dssp S-SCEEE------EEECSSSSEEEEEECT-------------------TTCEEEEEEEETTEEEEEEEEECCS-------
T ss_pred C-CcEEE------EEECCCCCeEEEEeec-------------------CCCcEEEEecCCccceeEEEecCCC-------
Confidence 1 22333 7899999998886410 1235999999887666553321110
Q ss_pred eccCCccccccccCCEEEEEEecCCCCceEEEEECCCCce
Q 002194 582 LMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (954)
Q Consensus 582 ~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~ 621 (954)
..-...+|+|||+.++.... ...+.+|++.+++.
T Consensus 350 --~~v~~~~~s~dg~~l~s~~~----dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 350 --TRVLYSALSPDGRILSTAAS----DENLKFWRVYDGDH 383 (401)
T ss_dssp --SCCCEEEECTTSSEEEEECT----TSEEEEEECCC---
T ss_pred --CCEEEEEECCCCCEEEEEeC----CCcEEEEECCCCcc
Confidence 00112578999987764332 35799999877754
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-12 Score=126.91 Aligned_cols=169 Identities=13% Similarity=-0.036 Sum_probs=110.7
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCc---EEEEcCCCCCCCCCCcccchhhHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF---AILGGPTTPIIGEGDEEANDRFVEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~---~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~a 746 (954)
.|+||++||..... ..| ..+...|+++|| .|+. .+..|+|.+.. ...+++.+.
T Consensus 3 ~~~vv~~HG~~~~~-----------~~~----~~~~~~l~~~G~~~~~v~~---~d~~g~g~s~~------~~~~~~~~~ 58 (181)
T 1isp_A 3 HNPVVMVHGIGGAS-----------FNF----AGIKSYLVSQGWSRDKLYA---VDFWDKTGTNY------NNGPVLSRF 58 (181)
T ss_dssp CCCEEEECCTTCCG-----------GGG----HHHHHHHHHTTCCGGGEEE---CCCSCTTCCHH------HHHHHHHHH
T ss_pred CCeEEEECCcCCCH-----------hHH----HHHHHHHHHcCCCCccEEE---EecCCCCCchh------hhHHHHHHH
Confidence 47799999963111 111 245667888998 5888 55566666532 122333333
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC--CCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCccc
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFM 824 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 824 (954)
++.+.+. .+.+++.++||||||.+++.++.++ |++++++|++++........ .+ ....
T Consensus 59 ~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~~-~~--------------~~~~--- 118 (181)
T 1isp_A 59 VQKVLDE--TGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGK-AL--------------PGTD--- 118 (181)
T ss_dssp HHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSB-CC--------------CCSC---
T ss_pred HHHHHHH--cCCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCcccccccc-cC--------------CCCC---
Confidence 4334333 2446899999999999999999987 88999999999864321110 00 0000
Q ss_pred ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
...++|+|++||++|..|| +..++ -...+++++++++|.... ++ ..+.+.+.+||.+.
T Consensus 119 --~~~~~p~l~i~G~~D~~v~--~~~~~---------~~~~~~~~~~~~gH~~~~-~~-~~~~~~i~~fl~~~ 176 (181)
T 1isp_A 119 --PNQKILYTSIYSSADMIVM--NYLSR---------LDGARNVQIHGVGHIGLL-YS-SQVNSLIKEGLNGG 176 (181)
T ss_dssp --TTCCCEEEEEEETTCSSSC--HHHHC---------CBTSEEEEESSCCTGGGG-GC-HHHHHHHHHHHTTT
T ss_pred --CccCCcEEEEecCCCcccc--ccccc---------CCCCcceeeccCchHhhc-cC-HHHHHHHHHHHhcc
Confidence 1235799999999999998 65321 233588899999998753 33 36778888888654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.2e-12 Score=138.64 Aligned_cols=262 Identities=8% Similarity=-0.014 Sum_probs=141.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
....++|||||++|+.+..+ .|.+|++..+ ++...+...+.+.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~----------------------------------~v~~~~~~~~---g~~~~~~~~~~~g 83 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK----------------------------------KWSSFAVKSP---TEIVHEASHPIGG 83 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT----------------------------------EEEEEEEEET---TEEEEEEEEECCS
T ss_pred CCcEEEECCCCCEEEEEccc----------------------------------eEEEEEECCC---CCEEEeeEeecCC
Confidence 45678999999988765542 5778887422 3333332221112
Q ss_pred cccceeecCCCCe-EEEEEeecc---ccC----CCCceEEEEEECCCCcee-eccc---CCCccccccccceeEecCCeE
Q 002194 190 KLNFVTWSQDGKH-LAFSIRIDA---EDS----SSSKLRVWVADVDTGKAR-PLFQ---SPDIYLNAIFDNFVWVNNSTL 257 (954)
Q Consensus 190 ~~~~~~wSPDG~~-iaf~~~~~~---~~~----~~~~~~l~~~d~~~g~~~-~lt~---~~~~~~~~~~~~~~wspDG~~ 257 (954)
....++|||||++ ++|+...+. ... .++...+|.++.+ |+.. .+.. .... .+..++|+|||++
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~-g~~~~~~~~~~~~~~~----~~~~~~~spdG~~ 158 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET-GKLEKNVQNYEYQENT----GIHGMVFDPTETY 158 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT-CCEEEEEEEEECCTTC----CEEEEEECTTSSE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC-CcCcceEeeEEeCCCC----cceEEEECCCCCE
Confidence 3567899999997 345432000 000 2233445544433 4432 2221 0111 1558899999998
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--CCceeEc---C--C
Q 002194 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEI---G--P 330 (954)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~--~G~~~~l---~--~ 330 (954)
|+++.. +...|+++++ +|+...+ . .
T Consensus 159 l~~~~~------------------------------------------------~~~~v~~~~~~~~g~~~~~~~~~~~~ 190 (365)
T 1jof_A 159 LYSADL------------------------------------------------TANKLWTHRKLASGEVELVGSVDAPD 190 (365)
T ss_dssp EEEEET------------------------------------------------TTTEEEEEEECTTSCEEEEEEEECSS
T ss_pred EEEEcC------------------------------------------------CCCEEEEEEECCCCCEEEeeeEecCC
Confidence 876510 2235777777 3654322 1 1
Q ss_pred -CccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc--CceEE----EeccCCCcccCCcccccccc----
Q 002194 331 -PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVR----ELCDLPLAEDIPIAFNSVRK---- 399 (954)
Q Consensus 331 -~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~~~----~l~~~~~~~~~p~~~~~~~~---- 399 (954)
......++|||||++|++..... +.+.+|+.+ +++.. .+...+.. +.+...
T Consensus 191 ~g~~p~~~~~spdg~~l~v~~~~~------------~~v~v~~~~~~~g~~~~~~~~~~~~~~~------~~g~~~~~~~ 252 (365)
T 1jof_A 191 PGDHPRWVAMHPTGNYLYALMEAG------------NRICEYVIDPATHMPVYTHHSFPLIPPG------IPDRDPETGK 252 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTT------------TEEEEEEECTTTCCEEEEEEEEESSCTT------CCCBCTTTSS
T ss_pred CCCCCCEeEECCCCCEEEEEECCC------------CeEEEEEEeCCCCcEEEccceEEcCCCC------cCCccccccc
Confidence 24567789999999998776322 267777654 34322 23222211 000000
Q ss_pred --Ccccee-eccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe---e-cccccCceeecc---CCce
Q 002194 400 --GMRSIN-WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---K-LDLRYGGISWCD---DSLA 469 (954)
Q Consensus 400 --g~~~~~-wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~---~-~~~~~~~~~~sp---Dg~~ 469 (954)
.+..++ |||||+.|+.. +...+. ...+.|.+|+++ ..++.+.+. . .......++||| ||++
T Consensus 253 ~~~~~~i~~~spdG~~l~v~-~~~~~~------~~~~~i~v~~~~--~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~ 323 (365)
T 1jof_A 253 GLYRADVCALTFSGKYMFAS-SRANKF------ELQGYIAGFKLR--DCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW 323 (365)
T ss_dssp BSEEEEEEEECTTSSEEEEE-EEESST------TSCCEEEEEEEC--TTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred ccccccEEEECCCCCEEEEE-CCCCCC------CCCCeEEEEEEC--CCCCEEEeeeeeecCCCCcccceecCCCcCCCE
Confidence 245789 99999976443 221110 012367777762 234554321 1 233467789999 8999
Q ss_pred EEEEEeccccceEEEEEcCC
Q 002194 470 LVYESWYKTRRTRTWVISPG 489 (954)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~ 489 (954)
|+++...++ ...||.++.+
T Consensus 324 l~v~~~~~~-~v~v~~~~~~ 342 (365)
T 1jof_A 324 MAITDDQEG-WLEIYRWKDE 342 (365)
T ss_dssp EEEECSSSC-EEEEEEEETT
T ss_pred EEEEEcCCC-eEEEEEEchh
Confidence 887754332 3566666543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-11 Score=136.50 Aligned_cols=302 Identities=8% Similarity=-0.008 Sum_probs=172.3
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecC---CeEEEEEecCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN---STLLVCTIPLL 265 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD---G~~l~~~~~~~ 265 (954)
..+..+.|+|||+.++.+... ..+...|.++++++++...+..... ...+..+.|+|+ |+.|+...
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~-----~~~d~~v~iw~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~l~~~~--- 87 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNF-----ARGTGVIQLYEIQHGDLKLLREIEK---AKPIKCGTFGATSLQQRYLATGD--- 87 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC-------CCCEEEEEEEECSSSEEEEEEEEE---SSCEEEEECTTCCTTTCCEEEEE---
T ss_pred CceEEEEEcCCCceEEEecCc-----cCCCcEEEEEeCCCCcccceeeecc---cCcEEEEEEcCCCCCCceEEEec---
Confidence 468899999999888876521 1125678888888877654432111 112678999999 68888661
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc--eeEcCCC-cccccc----
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGPP-AVYTSL---- 337 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~--~~~l~~~-~~~~~~---- 337 (954)
....|.++++ +++ ...+... ..+..+
T Consensus 88 ----------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 121 (357)
T 3i2n_A 88 ----------------------------------------------FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIG 121 (357)
T ss_dssp ----------------------------------------------TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEES
T ss_pred ----------------------------------------------CCCeEEEEeCCCCCccEEEEEecccceEEEeecc
Confidence 1234666676 443 3444433 444444
Q ss_pred --ccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce--EEEeccCCCcccCCccccccccCcccee----eccC
Q 002194 338 --DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSIN----WRSD 409 (954)
Q Consensus 338 --~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~----wspD 409 (954)
+|||||+.|+..+.+ +.+.+||+..+. ...+........ ..+..+. |+||
T Consensus 122 ~~~~s~~~~~l~~~~~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~ 179 (357)
T 3i2n_A 122 GLGIGEGAPEIVTGSRD-------------GTVKVWDPRQKDDPVANMEPVQGENK---------RDCWTVAFGNAYNQE 179 (357)
T ss_dssp GGGCC-CCCEEEEEETT-------------SCEEEECTTSCSSCSEEECCCTTSCC---------CCEEEEEEECCCC-C
T ss_pred ccccCCCccEEEEEeCC-------------CeEEEEeCCCCCCcceeccccCCCCC---------CceEEEEEEeccCCC
Confidence 789999999988743 389999998543 344433221111 1223444 8899
Q ss_pred CCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeecc---CCceEEEEEeccccceEEEEE
Q 002194 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD---DSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~sp---Dg~~l~~~~~~~~~~~~l~~~ 486 (954)
++.++.. ...+.|.+|++ ..++..........+..+.|+| ++..|+....++. ..+|.+
T Consensus 180 ~~~l~~~-------------~~d~~i~i~d~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~--i~i~d~ 241 (357)
T 3i2n_A 180 ERVVCAG-------------YDNGDIKLFDL---RNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK--FHVFDM 241 (357)
T ss_dssp CCEEEEE-------------ETTSEEEEEET---TTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE--EEEEEE
T ss_pred CCEEEEE-------------ccCCeEEEEEC---ccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe--EEEEeC
Confidence 9876665 33568999996 5555555566677788999999 9998888764432 455554
Q ss_pred cCCCCCCCcEE---EecCCCCCccCCCCCCCeeeccCCcE-EEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCC
Q 002194 487 SPGSKDVAPRI---LFDRSSEDVYSDPGSPMMRRTSTGTY-VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTG 562 (954)
Q Consensus 487 d~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~spdG~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 562 (954)
..... .... ........+.. +.|+|+|+. ++... ....|++||+..+
T Consensus 242 ~~~~~--~~~~~~~~~~~~~~~v~~------~~~~~~~~~~l~~~~---------------------~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 242 RTQHP--TKGFASVSEKAHKSTVWQ------VRHLPQNRELFLTAG---------------------GAGGLHLWKYEYP 292 (357)
T ss_dssp EEEET--TTEEEEEEEECCSSCEEE------EEEETTEEEEEEEEE---------------------TTSEEEEEEEECC
T ss_pred cCCCc--ccceeeeccCCCcCCEEE------EEECCCCCcEEEEEe---------------------CCCcEEEeecCCC
Confidence 43221 1111 11123333333 789999984 44443 1234888888765
Q ss_pred CeEEEeccCccccc-----ceeEEecc---CCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002194 563 SKERIWESDKEKYY-----ETTVALMS---DQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (954)
Q Consensus 563 ~~~~l~~~~~~~~~-----~~~~~~~~---~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g 619 (954)
........++.... .....+.. .-...+|+||++.++++... -..+++|++.+.
T Consensus 293 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~---d~~i~iw~~~~~ 354 (357)
T 3i2n_A 293 IQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF---DQTVRVLIVTKL 354 (357)
T ss_dssp SCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET---TSEEEEEEECC-
T ss_pred cccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC---CCcEEEEECCCc
Confidence 54332222111000 00000000 00125799999988765543 246888886544
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-12 Score=135.75 Aligned_cols=209 Identities=15% Similarity=0.107 Sum_probs=127.3
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002194 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (954)
Q Consensus 648 ~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G 727 (954)
+|.+++...+-+++ .|+||++||.+.... .|. ..+..| +++|.|++ .+..|+|
T Consensus 7 ~g~~l~~~~~g~~~--------~~~vv~lHG~~~~~~-----------~~~----~~~~~L-~~~~~v~~---~D~~G~G 59 (264)
T 3ibt_A 7 NGTLMTYSESGDPH--------APTLFLLSGWCQDHR-----------LFK----NLAPLL-ARDFHVIC---PDWRGHD 59 (264)
T ss_dssp TTEECCEEEESCSS--------SCEEEEECCTTCCGG-----------GGT----THHHHH-TTTSEEEE---ECCTTCS
T ss_pred CCeEEEEEEeCCCC--------CCeEEEEcCCCCcHh-----------HHH----HHHHHH-HhcCcEEE---EccccCC
Confidence 67777766654321 478999999742211 121 234444 55699999 6667888
Q ss_pred Ccccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCcccEEEEeccCCCCCCC-----
Q 002194 728 DEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTLT----- 799 (954)
Q Consensus 728 ~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~~~~~----- 799 (954)
.+... ........+|+.++++.+ +.+++.++|||+||.+++.++.++ |++++++|++++... ...
T Consensus 60 ~S~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~-~~~~~~~~ 132 (264)
T 3ibt_A 60 AKQTDSGDFDSQTLAQDLLAFIDAK------GIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLLQ-PHPGFWQQ 132 (264)
T ss_dssp TTCCCCSCCCHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCSS-CCHHHHHH
T ss_pred CCCCCccccCHHHHHHHHHHHHHhc------CCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCCC-cChhhcch
Confidence 77543 223456667777666654 335899999999999999999999 999999999987651 100
Q ss_pred ------CCCCc------------cc-cchh---------hhcHHHHH------------hcCcccccCCCCCCEEEEEeC
Q 002194 800 ------PFGFQ------------NE-DRTL---------WEATSTYV------------EMSPFMSANKLKKPILLVHGE 839 (954)
Q Consensus 800 ------~~~~~------------~~-~~~~---------~~~~~~~~------------~~sp~~~~~~~~~P~Lii~G~ 839 (954)
..... .. .... ......+. ..++...+.++++|+|++||.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~ 212 (264)
T 3ibt_A 133 LAEGQHPTEYVAGRQSFFDEWAETTDNADVLNHLRNEMPWFHGEMWQRACREIEANYRTWGSPLDRMDSLPQKPEICHIY 212 (264)
T ss_dssp HHHTTCTTTHHHHHHHHHHHHHTTCCCHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHSSHHHHHHTCSSCCEEEEEE
T ss_pred hhcccChhhHHHHHHHHHHHhcccCCcHHHHHHHHHhhhhccchhHHHHHHHhccchhhccchhhcccccCCCeEEEEec
Confidence 00000 00 0000 00000000 011225567889999999875
Q ss_pred CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
.|...+......+.+.+. -...++++++++||... .+..+.+.+.|.+||+
T Consensus 213 ~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 263 (264)
T 3ibt_A 213 SQPLSQDYRQLQLEFAAG----HSWFHPRHIPGRTHFPS-LENPVAVAQAIREFLQ 263 (264)
T ss_dssp CCSCCHHHHHHHHHHHHH----CTTEEEEECCCSSSCHH-HHCHHHHHHHHHHHTC
T ss_pred CCccchhhHHHHHHHHHh----CCCceEEEcCCCCCcch-hhCHHHHHHHHHHHHh
Confidence 554332113333343332 33479999999999763 5566777788888864
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-11 Score=132.02 Aligned_cols=244 Identities=8% Similarity=0.035 Sum_probs=154.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc----eeecccCCCccccccccceeEecCCe-EEEEEec
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK----ARPLFQSPDIYLNAIFDNFVWVNNST-LLVCTIP 263 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~----~~~lt~~~~~~~~~~~~~~~wspDG~-~l~~~~~ 263 (954)
..+..++|+|||+.|+.... ...|+++++++++ .+.+...... +..++|+|||+ .|++..
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~---------d~~v~iw~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~- 76 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSW---------DGSLTVYKFDIQAKNVDLLQSLRYKHP-----LLCCNFIDNTDLQIYVGT- 76 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEET---------TSEEEEEEEETTTTEEEEEEEEECSSC-----EEEEEEEESSSEEEEEEE-
T ss_pred CcEEEEEEcCCCCEEEEEcC---------CCeEEEEEeCCCCccccceeeeecCCc-----eEEEEECCCCCcEEEEEc-
Confidence 46888999999999988652 4566667776666 4444433322 77899999999 888761
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C-CceeEcCC--C-ccccccc
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D-GTVKEIGP--P-AVYTSLD 338 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~-G~~~~l~~--~-~~~~~~~ 338 (954)
....|.++++ . +....+.. . ..+..++
T Consensus 77 ------------------------------------------------~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~ 108 (342)
T 1yfq_A 77 ------------------------------------------------VQGEILKVDLIGSPSFQALTNNEANLGICRIC 108 (342)
T ss_dssp ------------------------------------------------TTSCEEEECSSSSSSEEECBSCCCCSCEEEEE
T ss_pred ------------------------------------------------CCCeEEEEEeccCCceEeccccCCCCceEEEE
Confidence 1234666676 3 45556655 5 7788899
Q ss_pred cCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC---------ceEEEeccCCCcccCCccccccccCccceeeccC
Q 002194 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG---------IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (954)
Q Consensus 339 ~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g---------~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD 409 (954)
|+| ++.|+..+.+ +.+.+||+.. ++. +.... ....+..++|+|+
T Consensus 109 ~~~-~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~~--~~~~~-----------~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 109 KYG-DDKLIAASWD-------------GLIEVIDPRNYGDGVIAVKNLN--SNNTK-----------VKNKIFTMDTNSS 161 (342)
T ss_dssp EET-TTEEEEEETT-------------SEEEEECHHHHTTBCEEEEESC--SSSSS-----------SCCCEEEEEECSS
T ss_pred eCC-CCEEEEEcCC-------------CeEEEEcccccccccccccCCe--eeEEe-----------eCCceEEEEecCC
Confidence 999 8888887743 3899999874 221 11111 1234567899998
Q ss_pred CCCceEEEEeccCCCccccccCCCeEEEEecCCCC-CCC-ce-EEeecccccCceeecc-CCceEEEEEeccccceEEEE
Q 002194 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ-GEG-PE-ILHKLDLRYGGISWCD-DSLALVYESWYKTRRTRTWV 485 (954)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-g~~-~~-~l~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~l~~ 485 (954)
+ ++.. ...+.|.+|++ .. +.. .. ........+..++|+| |++.|+....++ ..+||.
T Consensus 162 ~--l~~~-------------~~d~~i~i~d~--~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg--~i~i~~ 222 (342)
T 1yfq_A 162 R--LIVG-------------MNNSQVQWFRL--PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG--RVAVEF 222 (342)
T ss_dssp E--EEEE-------------ESTTEEEEEES--SCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS--EEEEEE
T ss_pred c--EEEE-------------eCCCeEEEEEC--CccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC--cEEEEE
Confidence 8 4333 33558999996 22 222 22 2234456678899999 999888876543 366777
Q ss_pred EcCCCCC--CCcEEEecCCCC---------CccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeE
Q 002194 486 ISPGSKD--VAPRILFDRSSE---------DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFL 554 (954)
Q Consensus 486 ~d~~~~~--~~~~~l~~~~~~---------~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 554 (954)
++..+.. ............ .+.. +.|+|||++|+.... ...|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~s~~~~~l~~~~~---------------------dg~i 275 (342)
T 1yfq_A 223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS------IEFSPRHKFLYTAGS---------------------DGII 275 (342)
T ss_dssp CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEE------EEECTTTCCEEEEET---------------------TSCE
T ss_pred EcCCCcccccccceeeecccccccccccceeEEE------EEEcCCCCEEEEecC---------------------CceE
Confidence 7665100 122222222211 2222 789999998887652 2249
Q ss_pred EEEECCCCCeEEEe
Q 002194 555 DLFDINTGSKERIW 568 (954)
Q Consensus 555 ~~~d~~~g~~~~l~ 568 (954)
++||+.+++.....
T Consensus 276 ~vwd~~~~~~~~~~ 289 (342)
T 1yfq_A 276 SCWNLQTRKKIKNF 289 (342)
T ss_dssp EEEETTTTEEEEEC
T ss_pred EEEcCccHhHhhhh
Confidence 99999988765443
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-11 Score=134.36 Aligned_cols=271 Identities=10% Similarity=0.057 Sum_probs=146.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||| .||..+.+ ..|.+|++..+. ......+....+..
T Consensus 16 ~v~~~~~s~~--~las~~~D---------------------------------~~i~lw~~~~~~-~~~~~~~~~~~h~~ 59 (330)
T 2hes_X 16 KIWSFDFSQG--ILATGSTD---------------------------------RKIKLVSVKYDD-FTLIDVLDETAHKK 59 (330)
T ss_dssp CEEEEEEETT--EEEEEESS---------------------------------SCEEEEECSSSC-CEEEEEECTTCCCS
T ss_pred ceeeeccCCC--EEEEEcCC---------------------------------CEEEEEEecCCC-eEEEEEEecCCccC
Confidence 4567888888 67776664 578999985411 01111221111233
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCC-------ceeecccCCCccccccccceeEecCCeEEEEEe
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-------KARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g-------~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (954)
.+..++|+|||+.|+... .++ .|.+++++.+ +.......... .+..++|+|||++|+...
T Consensus 60 ~v~~v~~sp~~~~las~s-------~D~--~v~iw~~~~~~~~~~~~~~~~~~~~h~~----~V~~v~~sp~g~~las~s 126 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAGS-------FDS--TVSIWAKEESADRTFEMDLLAIIEGHEN----EVKGVAWSNDGYYLATCS 126 (330)
T ss_dssp CEEEEEECTTSSEEEEEE-------TTS--CEEEEEC-------CCCEEEEEEC--------CEEEEEECTTSCEEEEEE
T ss_pred CEEEEEECCCCCEEEEEe-------CCC--cEEEEEcccCcCccccceeEEEEcCCCC----cEEEEEECCCCCEEEEEe
Confidence 688899999999888755 233 4455555322 11111111221 267899999999998761
Q ss_pred cCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C-Cc----eeEcCCC-cccc
Q 002194 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D-GT----VKEIGPP-AVYT 335 (954)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~-G~----~~~l~~~-~~~~ 335 (954)
. ...|.++++ . +. ...+... ..+.
T Consensus 127 ---------------------~----------------------------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 157 (330)
T 2hes_X 127 ---------------------R----------------------------DKSVWIWETDESGEEYECISVLQEHSQDVK 157 (330)
T ss_dssp ---------------------T----------------------------TSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred ---------------------C----------------------------CCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence 1 123555565 2 21 2233434 6788
Q ss_pred ccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 336 ~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
.++|+|||+.|+..+.+ +.+.+|+...+..+.+.... ++...+..++|+||+....+
T Consensus 158 ~v~~~p~~~~l~s~s~D-------------~~i~iW~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~~l 214 (330)
T 2hes_X 158 HVIWHPSEALLASSSYD-------------DTVRIWKDYDDDWECVAVLN----------GHEGTVWSSDFDKTEGVFRL 214 (330)
T ss_dssp EEEECSSSSEEEEEETT-------------SCEEEEEEETTEEEEEEEEC----------CCSSCEEEEEECCSSSSCEE
T ss_pred EEEECCCCCEEEEEcCC-------------CeEEEEECCCCCeeEEEEcc----------CCCCcEEEEEecCCCCeeEE
Confidence 89999999999888743 38999998765332222211 12234567899999433222
Q ss_pred EEEeccCCCccccccCCCeEEEEecCCCCCCC----c--e---EEee-cccccCceeeccCCceEEEEEeccccceEEEE
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG----P--E---ILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~----~--~---~l~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (954)
... +..+.|.+|++ .++. . . .+.. +...+..++|++++ .|+..+.++ ..+||.
T Consensus 215 ~s~-----------s~D~~v~iw~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg--~v~iw~ 277 (330)
T 2hes_X 215 CSG-----------SDDSTVRVWKY---MGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG--VLAVYE 277 (330)
T ss_dssp EEE-----------ETTSCEEEEEE---EEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS--CEEEEE
T ss_pred EEE-----------eCCCeEEEEEe---cCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC--EEEEEE
Confidence 211 23446777765 2110 0 1 1111 45567789999776 566554433 266776
Q ss_pred EcCCCCCCCcEEE-e--cCCCC-CccCCCCCCCeeecc--CCcEEEEEE
Q 002194 486 ISPGSKDVAPRIL-F--DRSSE-DVYSDPGSPMMRRTS--TGTYVIAKI 528 (954)
Q Consensus 486 ~d~~~~~~~~~~l-~--~~~~~-~~~~~~~~~~~~~sp--dG~~l~~~~ 528 (954)
.. ++ +...+ . ..+.. .+.. ++|+| ||+.|+...
T Consensus 278 ~~--~~--~~~~~~~~~~~h~~~~v~~------v~~~~~~~~~~las~s 316 (330)
T 2hes_X 278 EV--DG--EWKVFAKRALCHGVYEINV------VKWLELNGKTILATGG 316 (330)
T ss_dssp EE--TT--EEEEEEEESCTTTTSCEEE------EEEC-----CCEEEEE
T ss_pred cC--CC--ceEEEeccccccccceEEE------EEEecCCCceEEEEec
Confidence 54 22 11111 1 11111 2222 77898 788887765
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.7e-13 Score=146.70 Aligned_cols=226 Identities=14% Similarity=0.083 Sum_probs=133.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc--eeecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
.+..++|||||+.|+... . ...|.+++++++. .......... .+..++|+|||++|+...
T Consensus 13 ~v~~~~~s~~g~~l~~~~-------~--d~~i~iw~~~~~~~~~~~~~~~h~~----~v~~~~~s~~~~~l~s~s----- 74 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTT-------A--TNQVELYEQDGNGWKHARTFSDHDK----IVTCVDWAPKSNRIVTCS----- 74 (377)
T ss_dssp CCSCCEECSSSSEEECCC-------S--SSCBCEEEEETTEEEECCCBCCCSS----CEEEEEECTTTCCEEEEE-----
T ss_pred cEEEEEECCCCCEEEEec-------C--CCEEEEEEccCCceEEEEEEecCCc----eEEEEEEeCCCCEEEEEe-----
Confidence 588899999999988743 2 3455555666663 3222222222 277899999999888761
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc----eeEcCCC-ccccccccCC
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----VKEIGPP-AVYTSLDPSP 341 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~----~~~l~~~-~~~~~~~~Sp 341 (954)
....|.++++ ++. ...+... ..+..++|+|
T Consensus 75 --------------------------------------------~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 110 (377)
T 3dwl_C 75 --------------------------------------------QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP 110 (377)
T ss_dssp --------------------------------------------TTSSEEEC------CCCCEEECCCCSSCEEEEECCT
T ss_pred --------------------------------------------CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC
Confidence 1123556666 544 3334444 7788999999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCce----EEEeccCCCcccCCccccccccCccceeeccCCCCceEEE
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~----~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~ 417 (954)
||+.|+..+.+ +.+.+||+++++ .+.+... ....+..++|+|||+.++..
T Consensus 111 ~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~------------h~~~v~~~~~~~~~~~l~~~- 164 (377)
T 3dwl_C 111 NEDKFAVGSGA-------------RVISVCYFEQENDWWVSKHLKRP------------LRSTILSLDWHPNNVLLAAG- 164 (377)
T ss_dssp TSSCCEEEESS-------------SCEEECCC-----CCCCEEECSS------------CCSCEEEEEECTTSSEEEEE-
T ss_pred CCCEEEEEecC-------------CeEEEEEECCcccceeeeEeecc------------cCCCeEEEEEcCCCCEEEEE-
Confidence 99999988743 379999998654 2333320 12345789999999876665
Q ss_pred EeccCCCccccccCCCeEEEEecCCCCCCC----------------ceEE--eecccccCceeeccCCceEEEEEecccc
Q 002194 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEG----------------PEIL--HKLDLRYGGISWCDDSLALVYESWYKTR 479 (954)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~----------------~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (954)
+..+.|.+|++ .... ...+ ..+...+..++|+|||+.|+..+.++.
T Consensus 165 ------------~~d~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~- 228 (377)
T 3dwl_C 165 ------------CADRKAYVLSA---YVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSS- 228 (377)
T ss_dssp ------------ESSSCEEEEEE---CCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTE-
T ss_pred ------------eCCCEEEEEEE---EecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCc-
Confidence 33456788875 2110 1111 134555778999999999988865432
Q ss_pred ceEEEEEcCCCCCCCcE--EEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 480 RTRTWVISPGSKDVAPR--ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 480 ~~~l~~~d~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.+||.+ .++...+. .....+...+.. +.|+|||++|+...
T Consensus 229 -i~iwd~--~~~~~~~~~~~~~~~~~~~v~~------~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 229 -VTIAYP--SAPEQPPRALITVKLSQLPLRS------LLWANESAIVAAGY 270 (377)
T ss_dssp -EC-CEE--CSTTSCEEECCCEECSSSCEEE------EEEEETTEEEEEES
T ss_pred -EEEEEC--CCCCCcceeeEeecCCCCceEE------EEEcCCCCEEEEEc
Confidence 445554 44321111 112222222333 78999999887654
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=140.02 Aligned_cols=208 Identities=14% Similarity=0.082 Sum_probs=130.3
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (954)
..+|.+++...+- ..|+||++||++... ..|. .....|+++ |.|++ .+..|
T Consensus 16 ~~~g~~l~~~~~g----------~~~~vv~lHG~~~~~-----------~~~~----~~~~~L~~~-~~vi~---~D~~G 66 (301)
T 3kda_A 16 EVDGVKLHYVKGG----------QGPLVMLVHGFGQTW-----------YEWH----QLMPELAKR-FTVIA---PDLPG 66 (301)
T ss_dssp EETTEEEEEEEEE----------SSSEEEEECCTTCCG-----------GGGT----TTHHHHTTT-SEEEE---ECCTT
T ss_pred eeCCeEEEEEEcC----------CCCEEEEECCCCcch-----------hHHH----HHHHHHHhc-CeEEE---EcCCC
Confidence 3488888866652 147899999974221 1121 234556666 99999 66678
Q ss_pred CCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC---
Q 002194 726 EGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSK-IAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT--- 799 (954)
Q Consensus 726 ~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~r-i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~--- 799 (954)
+|.+... ........+|+.+.++.+ +.++ +.++||||||.+++.++.++|++++++|++++.......
T Consensus 67 ~G~S~~~~~~~~~~~~~~~l~~~l~~l------~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 140 (301)
T 3kda_A 67 LGQSEPPKTGYSGEQVAVYLHKLARQF------SPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIPDARIYRF 140 (301)
T ss_dssp STTCCCCSSCSSHHHHHHHHHHHHHHH------CSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSCCSSGGGGGS
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHc------CCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccCCCCCCccch
Confidence 8877543 223456677777777665 2346 999999999999999999999999999999975321000
Q ss_pred ----------CCCC------cccc------------chh---------hhcH---HHH-----------------H----
Q 002194 800 ----------PFGF------QNED------------RTL---------WEAT---STY-----------------V---- 818 (954)
Q Consensus 800 ----------~~~~------~~~~------------~~~---------~~~~---~~~-----------------~---- 818 (954)
.+.+ .... ... +... +.+ .
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (301)
T 3kda_A 141 PAFTAQGESLVWHFSFFAADDRLAETLIAGKERFFLEHFIKSHASNTEVFSERLLDLYARSYAKPHSLNASFEYYRALNE 220 (301)
T ss_dssp BSEETTEECSSTHHHHHHCSTTHHHHHHTTCHHHHHHHHHHHTCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHTHHH
T ss_pred hhhcchhhhhhhhHHHhhcCcchHHHHhccchHHHHHHHHHhccCCcccCCHHHHHHHHHHhccccccchHHHHHHhhcc
Confidence 0000 0000 000 0000 000 0
Q ss_pred ----hcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 819 ----EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 819 ----~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
.......+.++++|+|+++|++| ++ ......+. ..-.++++++++++||... .+..+.+.+.|.+|+
T Consensus 221 ~~~~~~~~~~~l~~i~~P~l~i~G~~D--~~--~~~~~~~~----~~~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~~l 291 (301)
T 3kda_A 221 SVRQNAELAKTRLQMPTMTLAGGGAGG--MG--TFQLEQMK----AYAEDVEGHVLPGCGHWLP-EECAAPMNRLVIDFL 291 (301)
T ss_dssp HHHHHHHHTTSCBCSCEEEEEECSTTS--CT--THHHHHHH----TTBSSEEEEEETTCCSCHH-HHTHHHHHHHHHHHH
T ss_pred chhhcccchhhccccCcceEEEecCCC--CC--hhHHHHHH----hhcccCeEEEcCCCCcCch-hhCHHHHHHHHHHHH
Confidence 00001122378999999999999 44 55555543 3334589999999999873 566677777777777
Q ss_pred HHh
Q 002194 895 QKY 897 (954)
Q Consensus 895 ~~~ 897 (954)
++.
T Consensus 292 ~~~ 294 (301)
T 3kda_A 292 SRG 294 (301)
T ss_dssp TTS
T ss_pred hhC
Confidence 653
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-11 Score=133.68 Aligned_cols=298 Identities=12% Similarity=0.028 Sum_probs=174.8
Q ss_pred CCCCceecC-CCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeec----
Q 002194 110 PLPALSFSP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQG---- 184 (954)
Q Consensus 110 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~---- 184 (954)
.+..++||| ||++|+....+ +.|.+|++.. +..........
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~d---------------------------------g~i~iw~~~~-~~~~~~~~~~~~~~~ 90 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSD---------------------------------GVIVLYDLEN-SSRQSYYTCKAVCSI 90 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETT---------------------------------SCEEEEECCC-CSSSSCEEECEEEEE
T ss_pred cEEEEEEecCCCCEEEEEcCC---------------------------------CeEEEEECCC-CcccceEeccccccc
Confidence 566789999 99999998875 4789999854 21111111000
Q ss_pred -----CCCCCcccceeecC-CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecC---C
Q 002194 185 -----FPDGAKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN---S 255 (954)
Q Consensus 185 -----~~~~~~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD---G 255 (954)
......+..+.|+| +++.|+... ....|.++++++++.......... +..+.|+|+ +
T Consensus 91 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 156 (408)
T 4a11_B 91 GRDHPDVHRYSVETVQWYPHDTGMFTSSS---------FDKTLKVWDTNTLQTADVFNFEET-----VYSHHMSPVSTKH 156 (408)
T ss_dssp CTTCTTCCSSCEEEEEECTTCTTCEEEEE---------TTSEEEEEETTTTEEEEEEECSSC-----EEEEEECSSCSSC
T ss_pred cccccccCCCcEEEEEEccCCCcEEEEEe---------CCCeEEEeeCCCCccceeccCCCc-----eeeeEeecCCCCC
Confidence 01234788899999 666666644 245788889988877666554432 557778874 4
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-c
Q 002194 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-A 332 (954)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~-~ 332 (954)
..|+... ....|.++++ +++ ...+... .
T Consensus 157 ~~~~~~~-------------------------------------------------~~~~v~~~d~~~~~~~~~~~~~~~ 187 (408)
T 4a11_B 157 CLVAVGT-------------------------------------------------RGPKVQLCDLKSGSCSHILQGHRQ 187 (408)
T ss_dssp CEEEEEE-------------------------------------------------SSSSEEEEESSSSCCCEEECCCCS
T ss_pred cEEEEEc-------------------------------------------------CCCeEEEEeCCCcceeeeecCCCC
Confidence 4777651 1234778888 664 4444444 7
Q ss_pred cccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce--EEEeccCCCcc--cCCccccccccCccceeecc
Q 002194 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAE--DIPIAFNSVRKGMRSINWRS 408 (954)
Q Consensus 333 ~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~--~~~l~~~~~~~--~~p~~~~~~~~g~~~~~wsp 408 (954)
.+..++|+|||++++++... ++.+.+||+.... ...+....... ............+..++|+|
T Consensus 188 ~v~~~~~~~~~~~ll~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 188 EILAVSWSPRYDYILATASA------------DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp CEEEEEECSSCTTEEEEEET------------TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cEEEEEECCCCCcEEEEEcC------------CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 78899999999975544433 2389999997542 23322211110 01111223345567899999
Q ss_pred CCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCce-EEeec----ccccCceee-ccCCceEEEEEeccccceE
Q 002194 409 DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKL----DLRYGGISW-CDDSLALVYESWYKTRRTR 482 (954)
Q Consensus 409 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~-~l~~~----~~~~~~~~~-spDg~~l~~~~~~~~~~~~ 482 (954)
||+.++.. +..+.|.+|++ ..++.. .+... ........+ ...+..+++.... ..
T Consensus 256 ~~~~l~~~-------------~~dg~i~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 315 (408)
T 4a11_B 256 DGLHLLTV-------------GTDNRMRLWNS---SNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG----ST 315 (408)
T ss_dssp TSSEEEEE-------------ETTSCEEEEET---TTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET----TE
T ss_pred CCCEEEEe-------------cCCCeEEEEEC---CCCccceeccccccccccccceeEEecCCCceEEEEecC----CE
Confidence 99977665 33557899996 333322 11111 111111222 2334556665443 24
Q ss_pred EEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCC
Q 002194 483 TWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTG 562 (954)
Q Consensus 483 l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 562 (954)
|.++++.++ +.......+...+.. +.|+|||++|+.... ...|++||++++
T Consensus 316 i~v~d~~~~--~~~~~~~~~~~~v~~------~~~s~~~~~l~s~~~---------------------dg~i~iw~~~~~ 366 (408)
T 4a11_B 316 IAVYTVYSG--EQITMLKGHYKTVDC------CVFQSNFQELYSGSR---------------------DCNILAWVPSLY 366 (408)
T ss_dssp EEEEETTTC--CEEEEECCCSSCEEE------EEEETTTTEEEEEET---------------------TSCEEEEEECC-
T ss_pred EEEEECcCC--cceeeeccCCCeEEE------EEEcCCCCEEEEECC---------------------CCeEEEEeCCCC
Confidence 777777764 344444444444444 889999999887762 224999999887
Q ss_pred CeE
Q 002194 563 SKE 565 (954)
Q Consensus 563 ~~~ 565 (954)
+..
T Consensus 367 ~~~ 369 (408)
T 4a11_B 367 EPV 369 (408)
T ss_dssp ---
T ss_pred Ccc
Confidence 643
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-11 Score=132.21 Aligned_cols=206 Identities=12% Similarity=0.010 Sum_probs=125.8
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+++....- + .|.||++||.+.... .| ......|++ .|.|++ .|.+|+
T Consensus 16 ~~g~~l~y~~~G--------~--g~~lvllHG~~~~~~-----------~w----~~~~~~L~~-~~~via---~Dl~G~ 66 (294)
T 1ehy_A 16 LPDVKIHYVREG--------A--GPTLLLLHGWPGFWW-----------EW----SKVIGPLAE-HYDVIV---PDLRGF 66 (294)
T ss_dssp CSSCEEEEEEEE--------C--SSEEEEECCSSCCGG-----------GG----HHHHHHHHT-TSEEEE---ECCTTS
T ss_pred ECCEEEEEEEcC--------C--CCEEEEECCCCcchh-----------hH----HHHHHHHhh-cCEEEe---cCCCCC
Confidence 578888765531 1 367999999642111 11 123444544 599999 677788
Q ss_pred CCcccch------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC
Q 002194 727 GDEEAND------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800 (954)
Q Consensus 727 G~~~~~~------~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~ 800 (954)
|.+..+. .......+|+.+.++.| ..+++.++||||||.+++.+|.++|++++++|++++........
T Consensus 67 G~S~~~~~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~ 140 (294)
T 1ehy_A 67 GDSEKPDLNDLSKYSLDKAADDQAALLDAL------GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPV 140 (294)
T ss_dssp TTSCCCCTTCGGGGCHHHHHHHHHHHHHHT------TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC---
T ss_pred CCCCCCccccccCcCHHHHHHHHHHHHHHc------CCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecCCCCCcchh
Confidence 8886542 22455566666666554 23589999999999999999999999999999998632110000
Q ss_pred ----------CC--Ccc--------ccch-------------------hh--hcHHHHHh-----------------c--
Q 002194 801 ----------FG--FQN--------EDRT-------------------LW--EATSTYVE-----------------M-- 820 (954)
Q Consensus 801 ----------~~--~~~--------~~~~-------------------~~--~~~~~~~~-----------------~-- 820 (954)
+. +.. .... .+ +..+.+.. .
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (294)
T 1ehy_A 141 YFGLGHVHESWYSQFHQLDMAVEVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIR 220 (294)
T ss_dssp --------CCHHHHHTTCHHHHHHHTSCHHHHHHHHHHHHHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSS
T ss_pred hccchhccCceEEEecCcchhHHHhccchhHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHhcCCcccchHHHHHHHHHh
Confidence 00 000 0000 00 00000100 0
Q ss_pred Cccc-----ccCCCCCCEEEEEeCCCCCCCCch-HHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 821 SPFM-----SANKLKKPILLVHGEEDNNSGTLT-MQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 821 sp~~-----~~~~~~~P~Lii~G~~D~~v~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
.... .+.++++|+|+++|++|..+| . .....+.+.+ ...+++++|++||... .++...+.+.|.+||
T Consensus 221 ~~~~~~~~~~l~~i~~P~Lvi~G~~D~~~~--~~~~~~~~~~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl 293 (294)
T 1ehy_A 221 PDAALWTDLDHTMSDLPVTMIWGLGDTCVP--YAPLIEFVPKYY----SNYTMETIEDCGHFLM-VEKPEIAIDRIKTAF 293 (294)
T ss_dssp SSCCCCCTGGGSCBCSCEEEEEECCSSCCT--THHHHHHHHHHB----SSEEEEEETTCCSCHH-HHCHHHHHHHHHHHC
T ss_pred hhhhhcCCcccCcCCCCEEEEEeCCCCCcc--hHHHHHHHHHHc----CCCceEEeCCCCCChh-hhCHHHHHHHHHHHh
Confidence 0000 122788999999999999876 4 3344443322 3479999999999863 566777778888875
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-10 Score=125.81 Aligned_cols=292 Identities=8% Similarity=0.032 Sum_probs=164.8
Q ss_pred CcccceeecCCC-CeEEEEEeeccccCCCCceEEEEEECCCCce-----eecccCCCccccccccceeEecCCeEEEEEe
Q 002194 189 AKLNFVTWSQDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-----RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (954)
Q Consensus 189 ~~~~~~~wSPDG-~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (954)
..+..++|+||+ +.|+..+ .|+...|| |+..++. .+....... .+..+.|+|||+.|+...
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s-------~D~~i~vW--d~~~~~~~~~~~~~~l~~h~~----~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSAS-------RDKTIIMW--KLTRDETNYGIPQRALRGHSH----FVSDVVISSDGQFALSGS 105 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEE-------TTSCEEEE--EECCSSSCSEEEEEEECCCSS----CEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEEeCCCCCEEEEEc-------CCCeEEEE--ECCCCCcccceeeEEEeCCCC----CEEEEEECCCCCEEEEEc
Confidence 479999999985 5555543 33444455 5444321 111111121 277899999999998761
Q ss_pred cCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE-cCCC-cccccccc
Q 002194 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-AVYTSLDP 339 (954)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~-l~~~-~~~~~~~~ 339 (954)
....|..++. .+.... .... .......+
T Consensus 106 -------------------------------------------------~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (340)
T 4aow_A 106 -------------------------------------------------WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 136 (340)
T ss_dssp -------------------------------------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred -------------------------------------------------ccccceEEeecccceeeeecCCCCceeEEEE
Confidence 1123555565 332222 2222 45566789
Q ss_pred CCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 340 SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
+++++.|+..+.+ +.+.+||+.+.......... ....+..+.|++++...++...
T Consensus 137 ~~~~~~l~s~s~d-------------~~~~~~d~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~s~- 191 (340)
T 4aow_A 137 SSDNRQIVSGSRD-------------KTIKLWNTLGVCKYTVQDES-----------HSEWVSCVRFSPNSSNPIIVSC- 191 (340)
T ss_dssp CTTSSCEEEEETT-------------SCEEEECTTSCEEEEECSSS-----------CSSCEEEEEECSCSSSCEEEEE-
T ss_pred eecCccceeecCC-------------CeEEEEEeCCCceEEEEecc-----------ccCcccceEEccCCCCcEEEEE-
Confidence 9999999887743 37889998865443332211 1133456789998876655422
Q ss_pred ccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002194 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 499 (954)
+....|.+|++ ..+.....+..+...+..++|+|||+.|+..+.++ .|.++|+.+. +.....
T Consensus 192 ----------~~d~~i~i~d~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg----~i~iwd~~~~--~~~~~~ 253 (340)
T 4aow_A 192 ----------GWDKLVKVWNL--ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG----QAMLWDLNEG--KHLYTL 253 (340)
T ss_dssp ----------ETTSCEEEEET--TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC----EEEEEETTTT--EEEEEE
T ss_pred ----------cCCCEEEEEEC--CCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCC----eEEEEEeccC--ceeeee
Confidence 22446888886 23323344455666788899999999988775443 3555566653 222222
Q ss_pred cCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCccccccee
Q 002194 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (954)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 579 (954)
... ..+.. +.|+|++..++... ...|++||++++........... ....
T Consensus 254 ~~~-~~v~~------~~~~~~~~~~~~~~----------------------d~~i~iwd~~~~~~~~~~~~~~~--~~~~ 302 (340)
T 4aow_A 254 DGG-DIINA------LCFSPNRYWLCAAT----------------------GPSIKIWDLEGKIIVDELKQEVI--STSS 302 (340)
T ss_dssp ECS-SCEEE------EEECSSSSEEEEEE----------------------TTEEEEEETTTTEEEEEECCC--------
T ss_pred cCC-ceEEe------eecCCCCceeeccC----------------------CCEEEEEECCCCeEEEeccccce--eeec
Confidence 221 11222 67899987665543 12489999987765433322210 0000
Q ss_pred EEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCc
Q 002194 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (954)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~ 620 (954)
......-...+|+|||+.|+..... ..+++|++.+|+
T Consensus 303 ~~h~~~v~~l~~s~dg~~l~sgs~D----g~v~iW~~~tGt 339 (340)
T 4aow_A 303 KAEPPQCTSLAWSADGQTLFAGYTD----NLVRVWQVTIGT 339 (340)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEETT----SCEEEEEEEC--
T ss_pred cCCCCCEEEEEECCCCCEEEEEeCC----CEEEEEeCCCcC
Confidence 0000000125799999877643332 458899987774
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.8e-13 Score=149.12 Aligned_cols=230 Identities=10% Similarity=0.056 Sum_probs=136.5
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCC
Q 002194 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (954)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~ 188 (954)
+.+..++|||||++||..+.+ +.+.+|+.. + .+..+.+.
T Consensus 86 ~~V~~vawSPdG~~LAs~s~d---------------------------------g~V~iwd~~-----~---~l~~l~~~ 124 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNN---------------------------------GNVSVFKDN-----K---MLTNLDSK 124 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETT---------------------------------SCEEEEETT-----E---EEEECCCS
T ss_pred CcEEEEEECCCCCEEEEEeCC---------------------------------CcEEEEeCC-----c---eeeeccCC
Confidence 457788899999999988876 578899852 1 22222211
Q ss_pred -----CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce--------eecccCCCccccccccceeEecCC
Q 002194 189 -----AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--------RPLFQSPDIYLNAIFDNFVWVNNS 255 (954)
Q Consensus 189 -----~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~--------~~lt~~~~~~~~~~~~~~~wspDG 255 (954)
..+..++|||||+.||.... ...|-++++.++.. ..+.....+ ...-+..++|||||
T Consensus 125 ~~~~~~sv~svafSPDG~~LAsgs~---------DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g-h~~~V~sVawSPdg 194 (588)
T 2j04_A 125 GNLSSRTYHCFEWNPIESSIVVGNE---------DGELQFFSIRKNSENTPEFYFESSIRLSDAG-SKDWVTHIVWYEDV 194 (588)
T ss_dssp SCSTTTCEEEEEECSSSSCEEEEET---------TSEEEEEECCCCTTTCCCCEEEEEEECSCTT-CCCCEEEEEEETTE
T ss_pred CccccccEEEEEEcCCCCEEEEEcC---------CCEEEEEECCCCccccccceeeeeeeccccc-ccccEEEEEEcCCc
Confidence 14788999999999999652 45666677777642 222111110 11127789999999
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce----eEcC-
Q 002194 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV----KEIG- 329 (954)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~----~~l~- 329 (954)
.++.. ....++++++ ++.. +.+.
T Consensus 195 -Laass--------------------------------------------------~D~tVrlWd~~~~~~~~~~~tL~~ 223 (588)
T 2j04_A 195 -LVAAL--------------------------------------------------SNNSVFSMTVSASSHQPVSRMIQN 223 (588)
T ss_dssp -EEEEE--------------------------------------------------TTCCEEEECCCSSSSCCCEEEEEC
T ss_pred -EEEEe--------------------------------------------------CCCeEEEEECCCCccccceeeecc
Confidence 44433 1223666777 4442 2342
Q ss_pred CC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceee--
Q 002194 330 PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINW-- 406 (954)
Q Consensus 330 ~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~w-- 406 (954)
.. ..+.+++|| |+.||.++. +.|.+|++.+++...+... +...+..++|
T Consensus 224 ~h~~~V~svaFs--g~~LASa~~--------------~tIkLWd~~~~~~~~~~~g------------h~~~V~~va~~~ 275 (588)
T 2j04_A 224 ASRRKITDLKIV--DYKVVLTCP--------------GYVHKIDLKNYSISSLKTG------------SLENFHIIPLNH 275 (588)
T ss_dssp CCSSCCCCEEEE--TTEEEEECS--------------SEEEEEETTTTEEEEEECS------------CCSCCCEEEETT
T ss_pred cccCcEEEEEEE--CCEEEEEeC--------------CeEEEEECCCCeEEEEEcC------------CCceEEEEEeee
Confidence 23 678899999 688887762 2899999998877544421 1134567888
Q ss_pred ccCCCCceEEEEeccCC------------CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEE
Q 002194 407 RSDKPSTLYWAETQDGG------------DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 407 spDg~~i~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (954)
||||+.++.. ..+|. +....+.....+++|+. .++....+.. ...+.+++|||||+.++.+.
T Consensus 276 s~d~~~La~a--~edG~klw~~d~~~~spd~~l~a~~d~~v~lW~~---~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 276 EKESTILLMS--NKTSYKVLLEDELHVTADNIIAPYLEKKFKKWST---IWNEFNNYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp CSSCEEEEEC--SSCEEEEEESSSEEEECCCSSHHHHHHHHHHTTT---TTTSSSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred CCCCCEEEEE--cCCCCEEEeeccEEECCCceEEEEcCCEEEEEEC---CCCceeeecc-ceEEEEEEECCCCCEEEEEE
Confidence 8888755543 11110 00000011223444442 3333332222 44567899999999888764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-10 Score=138.28 Aligned_cols=287 Identities=8% Similarity=0.051 Sum_probs=174.2
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCC----ceeecccCCCcccccc-ccceeEec--CCeEEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG----KARPLFQSPDIYLNAI-FDNFVWVN--NSTLLVCT 261 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g----~~~~lt~~~~~~~~~~-~~~~~wsp--DG~~l~~~ 261 (954)
..+..++|||||++|++.. ...|.+++++++ +......... .. +..++|+| ||++|+..
T Consensus 19 ~~v~~~~~spdg~~l~~~~----------~~~v~v~~~~~~~~~~~~~~~~~~h~----~~~v~~~~~sp~~~~~~l~s~ 84 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPC----------GKSAFVRCLDDGDSKVPPVVQFTGHG----SSVVTTVKFSPIKGSQYLCSG 84 (615)
T ss_dssp TCCCCCEEETTTTEEEEEE----------TTEEEEEECCSSCCSSCSEEEECTTT----TSCEEEEEECSSTTCCEEEEE
T ss_pred CceeEEEECCCCCEEEEec----------CCeEEEEECCCCCCccccceEEecCC----CceEEEEEECcCCCCCEEEEe
Confidence 3688899999999999965 347888888876 4333322222 23 56899999 99999876
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC------c---eeEcCCC
Q 002194 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG------T---VKEIGPP 331 (954)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G------~---~~~l~~~ 331 (954)
. . ...|.++++ +| + ...+...
T Consensus 85 ~---------------------~----------------------------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~ 115 (615)
T 1pgu_A 85 D---------------------E----------------------------SGKVIVWGWTFDKESNSVEVNVKSEFQVL 115 (615)
T ss_dssp E---------------------T----------------------------TSEEEEEEEEEEGGGTEEEEEEEEEEECC
T ss_pred c---------------------C----------------------------CCEEEEEeCCCCcccccccccccchhhcc
Confidence 1 1 123445555 33 1 2223323
Q ss_pred -ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 -~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..+..++|||||++|+..+..... ...+++|+ .+.....+..+. ..+..+.|+|||
T Consensus 116 ~~~v~~~~~s~~~~~l~~~~~~~~~---------~~~v~~~d-~~~~~~~~~~~~-------------~~v~~~~~~~~~ 172 (615)
T 1pgu_A 116 AGPISDISWDFEGRRLCVVGEGRDN---------FGVFISWD-SGNSLGEVSGHS-------------QRINACHLKQSR 172 (615)
T ss_dssp SSCEEEEEECTTSSEEEEEECCSSC---------SEEEEETT-TCCEEEECCSCS-------------SCEEEEEECSSS
T ss_pred cccEEEEEEeCCCCEEEEeccCCCC---------ccEEEEEE-CCCcceeeecCC-------------ccEEEEEECCCC
Confidence 678889999999999998754321 23778887 333444433321 345679999999
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeeccc---ccCceeeccC-CceEEEEEeccccceEEEEE
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL---RYGGISWCDD-SLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~---~~~~~~~spD-g~~l~~~~~~~~~~~~l~~~ 486 (954)
+.+++.. +..+.|.+|+. ..+.....+..+.. .+..++|+|| |+.|+....++ .|.++
T Consensus 173 ~~~l~~~------------~~d~~v~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~vw 234 (615)
T 1pgu_A 173 PMRSMTV------------GDDGSVVFYQG--PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR----KISCF 234 (615)
T ss_dssp SCEEEEE------------ETTTEEEEEET--TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC----CEEEE
T ss_pred CcEEEEE------------eCCCcEEEEeC--CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCC----eEEEE
Confidence 8544441 33568899986 22222334444555 6788999999 99888776543 36666
Q ss_pred cCCCCCCCcEEEe-c---CCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCC
Q 002194 487 SPGSKDVAPRILF-D---RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTG 562 (954)
Q Consensus 487 d~~~~~~~~~~l~-~---~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 562 (954)
++.++ +..... . .....+.. +.|+ +|++++.... ...|.+||+.++
T Consensus 235 d~~~~--~~~~~~~~~~~~~~~~v~~------~~~~-~~~~l~~~~~---------------------d~~i~~wd~~~~ 284 (615)
T 1pgu_A 235 DGKSG--EFLKYIEDDQEPVQGGIFA------LSWL-DSQKFATVGA---------------------DATIRVWDVTTS 284 (615)
T ss_dssp ETTTC--CEEEECCBTTBCCCSCEEE------EEES-SSSEEEEEET---------------------TSEEEEEETTTT
T ss_pred ECCCC--CEeEEecccccccCCceEE------EEEc-CCCEEEEEcC---------------------CCcEEEEECCCC
Confidence 76664 323333 2 33333333 7889 9988887762 235999999988
Q ss_pred CeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCce
Q 002194 563 SKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (954)
Q Consensus 563 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~ 621 (954)
+.................. ..++ +++.++.... ...++++++.+++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~l~~~~~----~g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 285 KCVQKWTLDKQQLGNQQVG-------VVAT-GNGRIISLSL----DGTLNFYELGHDEV 331 (615)
T ss_dssp EEEEEEECCTTCGGGCEEE-------EEEE-ETTEEEEEET----TSCEEEEETTEEEE
T ss_pred cEEEEEcCCCCcccCceeE-------EEeC-CCCeEEEEEC----CCCEEEEECCCCcE
Confidence 7665544331100111111 1233 6666665443 34588888766543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-11 Score=133.26 Aligned_cols=242 Identities=13% Similarity=0.208 Sum_probs=149.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCce---eeeecCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE---IEIQGFP 186 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~---~~lt~~~ 186 (954)
.+..++|||||++||..+.+ ..|.||++.. +.. ..+.++
T Consensus 15 ~V~~v~~s~~g~~lasgs~D---------------------------------~~v~lwd~~~----~~~~~~~~l~gH- 56 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSD---------------------------------RSVKIFDVRN----GGQILIADLRGH- 56 (316)
T ss_dssp CEEEEEECGGGCEEEEEETT---------------------------------TEEEEEEEET----TEEEEEEEEECC-
T ss_pred eEEEeeEcCCCCEEEEEeCC---------------------------------CeEEEEEecC----CCcEEEEEEcCC-
Confidence 56688999999999998876 5799999854 322 233332
Q ss_pred CCCcccceeecC--CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecc--cCCCccccccccceeEecC--CeEEEE
Q 002194 187 DGAKLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLF--QSPDIYLNAIFDNFVWVNN--STLLVC 260 (954)
Q Consensus 187 ~~~~~~~~~wSP--DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt--~~~~~~~~~~~~~~~wspD--G~~l~~ 260 (954)
...+..++|+| +|+.|+..+ . ...|.++|+++++...+. ..... .+..++|+|| |..|+.
T Consensus 57 -~~~V~~v~~~~~~~~~~l~s~s-------~--D~~v~iWd~~~~~~~~~~~~~~h~~----~V~~v~~~p~~~g~~las 122 (316)
T 3bg1_A 57 -EGPVWQVAWAHPMYGNILASCS-------Y--DRKVIIWREENGTWEKSHEHAGHDS----SVNSVCWAPHDYGLILAC 122 (316)
T ss_dssp -SSCEEEEEECCGGGSSCEEEEE-------T--TSCEEEECCSSSCCCEEEEECCCSS----CCCEEEECCTTTCSCEEE
T ss_pred -CccEEEEEeCCCCCCCEEEEEE-------C--CCEEEEEECCCCcceEEEEccCCCC----ceEEEEECCCCCCcEEEE
Confidence 24688899986 488888755 2 445666677766422221 11221 2678999998 777776
Q ss_pred EecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ce---eEcCCC-ccc
Q 002194 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TV---KEIGPP-AVY 334 (954)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~---~~l~~~-~~~ 334 (954)
.. ....|.++++ ++ .. ..+... ..+
T Consensus 123 gs-------------------------------------------------~D~~i~lwd~~~~~~~~~~~~~~~h~~~v 153 (316)
T 3bg1_A 123 GS-------------------------------------------------SDGAISLLTYTGEGQWEVKKINNAHTIGC 153 (316)
T ss_dssp EC-------------------------------------------------SSSCEEEEEECSSSCEEECCBTTSSSSCB
T ss_pred Ec-------------------------------------------------CCCCEEEEecCCCCCcceeeeeccccCCc
Confidence 51 1123555666 33 21 112222 566
Q ss_pred cccccCCCC-----------------cEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccc
Q 002194 335 TSLDPSPDE-----------------KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNS 396 (954)
Q Consensus 335 ~~~~~SpDG-----------------k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~ 396 (954)
..++|+|++ ++|+..+. ++.|.+||++++ ..+.+.... +
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~-------------D~~v~lWd~~~~~~~~~~~~l~----------~ 210 (316)
T 3bg1_A 154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGC-------------DNLIKLWKEEEDGQWKEEQKLE----------A 210 (316)
T ss_dssp CCCEECCCCCC------CCSCCCCCCCBEECCBT-------------TSBCCEEEECTTSCEEEEECCB----------C
T ss_pred ceEEEccccCCccccccccccCccccceEEEecC-------------CCeEEEEEeCCCCccceeeecc----------c
Confidence 788899983 45554442 348899998743 222222211 2
Q ss_pred cccCccceeeccCC----CCceEEEEeccCCCccccccCCCeEEEEecCCCCCC--CceEEeecccccCceeeccCCceE
Q 002194 397 VRKGMRSINWRSDK----PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE--GPEILHKLDLRYGGISWCDDSLAL 470 (954)
Q Consensus 397 ~~~g~~~~~wspDg----~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~--~~~~l~~~~~~~~~~~~spDg~~l 470 (954)
+...+..++|+||+ +.|+.. +..+.|.+|+++....+ ..+.+......+..++|+|||+.|
T Consensus 211 h~~~V~~v~~sp~~~~~~~~las~-------------s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 277 (316)
T 3bg1_A 211 HSDWVRDVAWAPSIGLPTSTIASC-------------SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANIL 277 (316)
T ss_dssp CSSCEEEEECCCCSSCSCCEEEEE-------------ETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCE
T ss_pred CCCceEEEEecCCCCCCCceEEEE-------------cCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEE
Confidence 22456789999997 333333 34557888986211111 123455556678889999999999
Q ss_pred EEEEeccccceEEEEEcCCC
Q 002194 471 VYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~ 490 (954)
+..+.++. .+||..+..+
T Consensus 278 as~~~D~~--v~lw~~~~~g 295 (316)
T 3bg1_A 278 AVSGGDNK--VTLWKESVDG 295 (316)
T ss_dssp EEEESSSC--EEEEEECTTS
T ss_pred EEEcCCCe--EEEEEECCCC
Confidence 98876554 7888876553
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.4e-11 Score=145.95 Aligned_cols=72 Identities=10% Similarity=-0.029 Sum_probs=50.1
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCce---EEe---------ecccccCceeeccCC
Q 002194 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE---ILH---------KLDLRYGGISWCDDS 467 (954)
Q Consensus 400 g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~---~l~---------~~~~~~~~~~~spDg 467 (954)
.+..++|+|||+.++-. +..+.|.+|++ .++..+ .+. .+...+..++|||||
T Consensus 437 ~v~sv~~spdg~~laSg-------------s~DgtVrlWd~---~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg 500 (902)
T 2oaj_A 437 TKRQKLPAEYGTAFITG-------------HSNGSVRIYDA---SHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAET 500 (902)
T ss_dssp CCCCCCCCSEEEEEEEE-------------ETTSEEEEEES---SCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTT
T ss_pred CCCcccccccCcEEEEe-------------cCCCcEEEEEC---CCccccCCceEEeechhhcCCCCCCceeEEEecCCC
Confidence 34567899999866554 44668999996 444321 121 344567889999999
Q ss_pred ceEEEEEeccccceEEEEEcCC
Q 002194 468 LALVYESWYKTRRTRTWVISPG 489 (954)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d~~ 489 (954)
+.|+.+..++. .+||.++..
T Consensus 501 ~~LAsgs~Dgt--V~lwd~~~~ 520 (902)
T 2oaj_A 501 LELAVSIETGD--VVLFKYEVN 520 (902)
T ss_dssp TEEEEEETTSC--EEEEEEEEC
T ss_pred CeEEEEecCcE--EEEEEecCc
Confidence 99998876654 788887643
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.5e-11 Score=127.67 Aligned_cols=275 Identities=9% Similarity=0.054 Sum_probs=166.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCc-eeeeecCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ-EIEIQGFPDG 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~-~~~lt~~~~~ 188 (954)
.+..++| |||++|+..+.+ +.|.+|++.. +. ...+.. ..
T Consensus 20 ~v~~~~~-~~~~~l~s~~~d---------------------------------g~v~vw~~~~----~~~~~~~~~--~~ 59 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVSRD---------------------------------GTVRLWSKDD----QWLGTVVYT--GQ 59 (313)
T ss_dssp CEEEEEE-EETTEEEEEETT---------------------------------SEEEEEEESS----SEEEEEEEE--CS
T ss_pred CcEEEEe-cCCCEEEEEEcC---------------------------------CcEEEEECCC----CEEEEEeec--CC
Confidence 4567888 999999988775 5799999853 33 223332 23
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc---eeecccCCCccccccccceeEecCCeEEEEEecCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK---ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~---~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~ 265 (954)
..+....|+|||+.|+.... ...|.++++.... .......... .+..+.| +++.|+...
T Consensus 60 ~~v~~~~~~~~~~~l~~~~~---------dg~i~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~--~~~~l~~~~--- 121 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGGK---------DTMINGVPLFATSGEDPLYTLIGHQG----NVCSLSF--QDGVVISGS--- 121 (313)
T ss_dssp SCEEEEEEETTTTEEEEEET---------TSCEEEEETTCCTTSCC-CEECCCSS----CEEEEEE--ETTEEEEEE---
T ss_pred ccEEEEEECCCCCEEEEecC---------CCeEEEEEeeecCCCCcccchhhccc----CEEEEEe--cCCEEEEEe---
Confidence 46889999999999988652 3455555654432 1111111111 2556777 566676551
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-ccccccccCC-CC
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSP-DE 343 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-~~~~~~~~Sp-DG 343 (954)
....|.+++.......+... ..+..+.|+| ++
T Consensus 122 ----------------------------------------------~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (313)
T 3odt_A 122 ----------------------------------------------WDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSE 155 (313)
T ss_dssp ----------------------------------------------TTSEEEEEETTEEEEEEECCSSCEEEEEEEETTT
T ss_pred ----------------------------------------------CCCCEEEEcCCcEEEecccCCCceeEEEEccCCC
Confidence 11235555532223333333 6667788888 89
Q ss_pred cEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 344 k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
+.++..+.+ +.+.+||.. .....+... ....+..++|+|+++ ++..
T Consensus 156 ~~l~~~~~d-------------~~i~i~d~~-~~~~~~~~~------------~~~~i~~~~~~~~~~-~~~~------- 201 (313)
T 3odt_A 156 NKFLTASAD-------------KTIKLWQND-KVIKTFSGI------------HNDVVRHLAVVDDGH-FISC------- 201 (313)
T ss_dssp TEEEEEETT-------------SCEEEEETT-EEEEEECSS------------CSSCEEEEEEEETTE-EEEE-------
T ss_pred CEEEEEECC-------------CCEEEEecC-ceEEEEecc------------CcccEEEEEEcCCCe-EEEc-------
Confidence 998887743 389999833 222333221 113456789999998 4433
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCC
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 503 (954)
+..+.|.+|++ ..+.....+..+...+..++|+||| .|+..+.+ ..|.++++.++ +.......+.
T Consensus 202 ------~~dg~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d----g~v~iwd~~~~--~~~~~~~~~~ 266 (313)
T 3odt_A 202 ------SNDGLIKLVDM--HTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGED----RTVRIWSKENG--SLKQVITLPA 266 (313)
T ss_dssp ------ETTSEEEEEET--TTCCEEEEEECCSSCEEEEEECTTS-CEEEEETT----SEEEEECTTTC--CEEEEEECSS
T ss_pred ------cCCCeEEEEEC--CchhhhhhhhcCCceEEEEEEecCC-CEEEEecC----CEEEEEECCCC--ceeEEEeccC
Confidence 33558999996 2333345555667778899999999 45555433 34777787775 3344444433
Q ss_pred CCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeE
Q 002194 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (954)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 565 (954)
..+.. +.|+|||+.++ .. ....|++||+++++..
T Consensus 267 ~~i~~------~~~~~~~~~~~-~~---------------------~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 267 ISIWS------VDCMSNGDIIV-GS---------------------SDNLVRIFSQEKSRWA 300 (313)
T ss_dssp SCEEE------EEECTTSCEEE-EE---------------------TTSCEEEEESCGGGCC
T ss_pred ceEEE------EEEccCCCEEE-Ee---------------------CCCcEEEEeCCCCcee
Confidence 33333 78999998543 32 1224999999876543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-11 Score=136.04 Aligned_cols=241 Identities=12% Similarity=0.133 Sum_probs=151.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCC-CC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DG 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~-~~ 188 (954)
.+..++|||||++||....+ +.|.+|++.. .....+..+. +.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d---------------------------------g~i~iw~~~~----~~~~~~~~~~~h~ 55 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSD---------------------------------KTIKIFEVEG----ETHKLIDTLTGHE 55 (379)
T ss_dssp CEEEEEECSSSSEEEEEETT---------------------------------SCEEEEEEET----TEEEEEEEECCCS
T ss_pred cEEEEEEcCCCCEEEEEECC---------------------------------CcEEEEecCC----CcceeeeEecCCC
Confidence 56678999999999988765 4789999853 2222222222 23
Q ss_pred CcccceeecCC--CCeEEEEEeeccccCCCCceEEEEEECCCCce--eecccCCCccccccccceeEecC--CeEEEEEe
Q 002194 189 AKLNFVTWSQD--GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIYLNAIFDNFVWVNN--STLLVCTI 262 (954)
Q Consensus 189 ~~~~~~~wSPD--G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~wspD--G~~l~~~~ 262 (954)
..+..+.|+|+ |+.|+... . ...|.++|+++++. ......... .+..+.|+|+ |+.|++..
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~-------~--dg~v~iwd~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~~~~ 122 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCS-------Y--DGKVLIWKEENGRWSQIAVHAVHSA----SVNSVQWAPHEYGPLLLVAS 122 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEE-------T--TSCEEEEEEETTEEEEEEEECCCSS----CEEEEEECCGGGCSEEEEEE
T ss_pred CcEEEEEeCCCCCCCEEEEec-------c--CCEEEEEEcCCCceeEeeeecCCCc----ceEEEEeCCCCCCCEEEEec
Confidence 46888999988 88888754 2 34566667767652 222221222 2678999999 88888761
Q ss_pred cCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC---ceeEcCCC-cccccc
Q 002194 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG---TVKEIGPP-AVYTSL 337 (954)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G---~~~~l~~~-~~~~~~ 337 (954)
....|.++++ ++ ....+... ..+..+
T Consensus 123 -------------------------------------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~ 153 (379)
T 3jrp_A 123 -------------------------------------------------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 153 (379)
T ss_dssp -------------------------------------------------TTSEEEEEECCTTSCCCEEEEECCTTCEEEE
T ss_pred -------------------------------------------------CCCcEEEEecCCCCceeeEEecCCCCceEEE
Confidence 1234667777 44 12223333 677889
Q ss_pred ccCC-------------CCcEEEEEeecCCcccccccCCCCcceEEEeccCce-E-EEeccCCCcccCCccccccccCcc
Q 002194 338 DPSP-------------DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-V-RELCDLPLAEDIPIAFNSVRKGMR 402 (954)
Q Consensus 338 ~~Sp-------------DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~-~~l~~~~~~~~~p~~~~~~~~g~~ 402 (954)
+|+| ||+.|+..+.+ +.|.+||+.++. . ..+.... .....+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~~----------~h~~~v~ 210 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGAD-------------NLVKIWKYNSDAQTYVLESTLE----------GHSDWVR 210 (379)
T ss_dssp EECCCC----------CTTCEEEEEETT-------------SCEEEEEEETTTTEEEEEEEEC----------CCSSCEE
T ss_pred EEcCccccccccccCCCCCCEEEEEeCC-------------CeEEEEEecCCCcceeeEEEEe----------cccCcEe
Confidence 9999 79999888743 389999997432 1 1111111 1123456
Q ss_pred ceeeccC---CCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCC---ceEEe---ecccccCceeeccCCceEEEE
Q 002194 403 SINWRSD---KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG---PEILH---KLDLRYGGISWCDDSLALVYE 473 (954)
Q Consensus 403 ~~~wspD---g~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~---~~~l~---~~~~~~~~~~~spDg~~l~~~ 473 (954)
.++|+|| ++.++.. +..+.|.+|++ ..+. ...+. .....+..++|+|||+.|+..
T Consensus 211 ~~~~sp~~~~~~~l~s~-------------~~dg~i~iwd~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 274 (379)
T 3jrp_A 211 DVAWSPTVLLRSYLASV-------------SQDRTCIIWTQ---DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 274 (379)
T ss_dssp EEEECCCCSSSEEEEEE-------------ETTSCEEEEEE---SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred EEEECCCCCCCCeEEEE-------------eCCCEEEEEeC---CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEe
Confidence 8999999 6655444 33457888886 3222 22221 144556778999999999988
Q ss_pred EeccccceEEEEEcCCC
Q 002194 474 SWYKTRRTRTWVISPGS 490 (954)
Q Consensus 474 ~~~~~~~~~l~~~d~~~ 490 (954)
..++. .++|.++...
T Consensus 275 ~~dg~--i~iw~~~~~~ 289 (379)
T 3jrp_A 275 GGDNK--VTLWKENLEG 289 (379)
T ss_dssp ESSSS--EEEEEEEETT
T ss_pred cCCCc--EEEEeCCCCC
Confidence 76433 7777776543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.2e-11 Score=134.81 Aligned_cols=291 Identities=11% Similarity=0.021 Sum_probs=167.5
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCC-ce---eecccCCCccccccccceeEec-CCeEEEEEecCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-KA---RPLFQSPDIYLNAIFDNFVWVN-NSTLLVCTIPLL 265 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g-~~---~~lt~~~~~~~~~~~~~~~wsp-DG~~l~~~~~~~ 265 (954)
....+++|+...+++. ..+...|.+++++.. +. ....... ...+..++|+| |+++|+...
T Consensus 37 ~~~~~~~~~~~~~~~~--------~~~~g~i~v~~~~~~~~~~~~~~~~~~h----~~~V~~~~~~p~~~~~l~s~s--- 101 (402)
T 2aq5_A 37 SGFCAVNPKFMALICE--------ASGGGAFLVLPLGKTGRVDKNVPLVCGH----TAPVLDIAWCPHNDNVIASGS--- 101 (402)
T ss_dssp SCSEEECSSEEEEEBC--------CSSSCCEEEEETTCCEECCTTCCCBCCC----SSCEEEEEECTTCTTEEEEEE---
T ss_pred CCcEEECCCeEEEEEE--------EcCCCEEEEEECccCCCCCCCCceEecC----CCCEEEEEeCCCCCCEEEEEe---
Confidence 4457788866554442 233566777787542 21 1111111 22377899999 898888761
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc--------eeEcCCC-cccc
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--------VKEIGPP-AVYT 335 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~--------~~~l~~~-~~~~ 335 (954)
....|.++++ ++. ...+... ..+.
T Consensus 102 ----------------------------------------------~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~ 135 (402)
T 2aq5_A 102 ----------------------------------------------EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135 (402)
T ss_dssp ----------------------------------------------TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE
T ss_pred ----------------------------------------------CCCeEEEEEccCCCCccccCCceEEecCCCCeEE
Confidence 1234666676 442 3334434 6788
Q ss_pred ccccCCCCc-EEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002194 336 SLDPSPDEK-YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (954)
Q Consensus 336 ~~~~SpDGk-~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i 413 (954)
.++|+|||+ .|+..+. ++.+.+||+..++. ..+... .....+..++|+|||+.+
T Consensus 136 ~~~~~p~~~~~l~s~~~-------------dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 136 IVAWHPTAQNVLLSAGC-------------DNVILVWDVGTGAAVLTLGPD-----------VHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp EEEECSSBTTEEEEEET-------------TSCEEEEETTTTEEEEEECTT-----------TCCSCEEEEEECTTSSCE
T ss_pred EEEECcCCCCEEEEEcC-------------CCEEEEEECCCCCccEEEecC-----------CCCCceEEEEECCCCCEE
Confidence 899999995 5555542 23899999986654 333100 111345689999999987
Q ss_pred eEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEE-eeccc-ccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EIL-HKLDL-RYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l-~~~~~-~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+.. +..+.|.+|++ ..++. ..+ ..+.. .+..+.|+|||+.|+...... ....|.++|+.+
T Consensus 192 ~~~-------------~~d~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~-~d~~i~iwd~~~ 254 (402)
T 2aq5_A 192 CTS-------------CRDKRVRVIEP---RKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM-SERQVALWDTKH 254 (402)
T ss_dssp EEE-------------ETTSEEEEEET---TTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT-CCEEEEEEETTB
T ss_pred EEE-------------ecCCcEEEEeC---CCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC-CCceEEEEcCcc
Confidence 765 34568999996 33333 333 23333 267799999999877763211 124677777776
Q ss_pred CCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCC--eEEEe
Q 002194 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS--KERIW 568 (954)
Q Consensus 491 ~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~ 568 (954)
+........-.....+.. +.|+|||++++.... ....|++||+.+++ ...+.
T Consensus 255 ~~~~~~~~~~~~~~~v~~------~~~s~~~~~l~~~g~--------------------~dg~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 255 LEEPLSLQELDTSSGVLL------PFFDPDTNIVYLCGK--------------------GDSSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp CSSCSEEEECCCCSSCEE------EEEETTTTEEEEEET--------------------TCSCEEEEEECSSTTCEEEEE
T ss_pred ccCCceEEeccCCCceeE------EEEcCCCCEEEEEEc--------------------CCCeEEEEEecCCCcceEeec
Confidence 522122222122222222 789999998876651 12249999998887 44443
Q ss_pred ccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEee
Q 002194 569 ESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQIT 625 (954)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt 625 (954)
..... ..-...+|+||+..++. + -..+.++++.+++.+.+.
T Consensus 309 ~~~~~----------~~v~~~~~sp~~~~~~s---~---~~~~~~~~l~~~~~~~i~ 349 (402)
T 2aq5_A 309 MFSSK----------ESQRGMGYMPKRGLEVN---K---CEIARFYKLHERKCEPIA 349 (402)
T ss_dssp EECCS----------SCCSEEEECCGGGSCGG---G---TEEEEEEEEETTEEEEEE
T ss_pred ccccC----------CcccceEEeccccccee---c---ceeEEEEEcCCCcEEEEE
Confidence 32211 01112468888876541 1 125666666666655543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.5e-11 Score=131.36 Aligned_cols=242 Identities=11% Similarity=0.044 Sum_probs=142.6
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCC
Q 002194 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (954)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~ 188 (954)
..+..++|||||+.||....+ .+.+|++.. +........
T Consensus 20 ~~V~~v~fs~dg~~la~g~~~----------------------------------~~~iw~~~~----~~~~~~~~~--- 58 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTLK----------------------------------SFEIYNVHP----VAHIMSQEM--- 58 (355)
T ss_dssp CCCCEEEECTTSSEEEEECSS----------------------------------EEEEEEETT----EEEEEEEEC---
T ss_pred CceEEEEECCCCCEEEEEcCC----------------------------------EEEEEecCC----cceeeeeec---
Confidence 367889999999999987664 567888743 222211111
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+....|+++++.++.+.. +...|.++|..+++.......... +..+.|++++. +++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~--------~d~~v~iWd~~~~~~~~~~~~~~~-----v~~v~~~~~~~--~~~------- 116 (355)
T 3vu4_A 59 RHLSKVRMLHRTNYVAFVTG--------VKEVVHIWDDVKKQDVSRIKVDAP-----VKDLFLSREFI--VVS------- 116 (355)
T ss_dssp SCCCEEEECTTSSEEEEECS--------STTEEEEEETTTTEEEEEEECSSC-----EEEEEECSSEE--EEE-------
T ss_pred CCeEEEEEcCCCCEEEEEEC--------CccEEEEEECCCCcEEEEEECCCc-----eEEEEEcCCEE--EEE-------
Confidence 13677889999998887542 234888889888776544333332 66788887753 322
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-c-eeEcCCCccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-T-VKEIGPPAVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~-~~~l~~~~~~~~~~~SpDGk~ 345 (954)
....|+++++ ++ + ...+.. .....++++ +.
T Consensus 117 -------------------------------------------~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~ 149 (355)
T 3vu4_A 117 -------------------------------------------YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GL 149 (355)
T ss_dssp -------------------------------------------ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TE
T ss_pred -------------------------------------------EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cE
Confidence 1234777787 44 2 221111 222345666 77
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCC--CcccCC--ccccccccCccceeeccCCCCceEEEEecc
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP--LAEDIP--IAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~--~~~~~p--~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
+++.+... .+.+.+||+.++......... .....| ..+.++...+..++|+|||+.++..
T Consensus 150 la~~sg~~-----------~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~----- 213 (355)
T 3vu4_A 150 LVYSNEFN-----------LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC----- 213 (355)
T ss_dssp EEEEESSC-----------TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE-----
T ss_pred EEEeCCCc-----------CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE-----
Confidence 88763221 348999999864310000000 000001 1122333556789999999876654
Q ss_pred CCCccccccCCCe-EEEEecCCCCCCCceEEe-e-cccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 422 GGDAKVEVTPRDI-IYTQQAEPVQGEGPEILH-K-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 422 ~~~~~~~~~~~~~-l~~~~~~~~~g~~~~~l~-~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
+..+. |.+|++ .++.....+. . +...+..++|+|||+.|+..+.++. .+||.+..
T Consensus 214 --------s~d~~~v~iwd~--~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~--v~iw~~~~ 271 (355)
T 3vu4_A 214 --------SQDGTIIRVFKT--EDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT--LHVFEIFN 271 (355)
T ss_dssp --------ETTCSEEEEEET--TTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE--EEEEESSC
T ss_pred --------eCCCCEEEEEEC--CCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE--EEEEEccC
Confidence 34555 899996 3344444554 2 5667888999999999998876543 55665543
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.5e-13 Score=155.38 Aligned_cols=210 Identities=18% Similarity=0.122 Sum_probs=134.9
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC-cEEEEcCCC-CCCCCCCc
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG-FAILGGPTT-PIIGEGDE 729 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G-~~V~~~~~~-~~~G~G~~ 729 (954)
+...+|.|+.. . .++|+||++|||++..+...... .....|+++| ++|+..+|+ +..|++..
T Consensus 83 L~l~v~~P~~~--~--~~~PviV~iHGGg~~~g~~~~~~------------~~~~~la~~g~~vvv~~nYRlg~~Gf~~~ 146 (489)
T 1qe3_A 83 LYVNVFAPDTP--S--QNLPVMVWIHGGAFYLGAGSEPL------------YDGSKLAAQGEVIVVTLNYRLGPFGFLHL 146 (489)
T ss_dssp CEEEEEEECSS--C--CSEEEEEEECCSTTTSCCTTSGG------------GCCHHHHHHHTCEEEEECCCCHHHHSCCC
T ss_pred CEEEEEeCCCC--C--CCCCEEEEECCCccccCCCCCcc------------cCHHHHHhcCCEEEEecCccCcccccCcc
Confidence 56678888751 1 23899999999976544321110 1134567665 999998887 33344432
Q ss_pred cc--chhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhC--CCcccEEEEeccCCCCCCCC--
Q 002194 730 EA--NDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYNRTLTP-- 800 (954)
Q Consensus 730 ~~--~~~~~~~~~~D~~~av~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~~~~~~-- 800 (954)
.. ........+.|+.++++|+.++. ..|+++|.|+|+|+||++++.++... +++|+++|+.+|..++....
T Consensus 147 ~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~ 226 (489)
T 1qe3_A 147 SSFDEAYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQA 226 (489)
T ss_dssp TTTCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHHH
T ss_pred ccccccCCCCcchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHHHH
Confidence 11 11223455789999999998862 36999999999999999999887753 57899999999976321100
Q ss_pred ----------CCCcccc-chhhh--cHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEE
Q 002194 801 ----------FGFQNED-RTLWE--ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRL 867 (954)
Q Consensus 801 ----------~~~~~~~-~~~~~--~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~ 867 (954)
.++..+. ..+.. ..+.+...+++........|.+++|+..|..+. +++..+++++.+..++++.+
T Consensus 227 ~~~~~~~~~~~g~~~~~~~~Lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~D~~~~--~~~~~~~~~~~~~~~vp~~~ 304 (489)
T 1qe3_A 227 ASTAAAFLQVLGINESQLDRLHTVAAEDLLKAADQLRIAEKENIFQLFFQPALDPKTL--PEEPEKSIAEGAASGIPLLI 304 (489)
T ss_dssp HHHHHHHHHHHTCCTTCGGGGGTSCHHHHHHHHHHHHTSTTCCTTSCSSCCBCBTTTB--CSCHHHHHHTTTTTTCCEEE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHcCCHHHHHHHHHHhhhccccccCCccceEeECCeec--CcCHHHHHhcCCCCCCCEEE
Confidence 0000000 00000 011111112221111234567889999999987 88899999888888999999
Q ss_pred EEeCCCCCcCCC
Q 002194 868 VILPFESHGYAA 879 (954)
Q Consensus 868 ~~~~~~~H~~~~ 879 (954)
-..++++|.+..
T Consensus 305 g~~~~Eg~~~~~ 316 (489)
T 1qe3_A 305 GTTRDEGYLFFT 316 (489)
T ss_dssp EEETTGGGGTCC
T ss_pred eeecchhHhhcc
Confidence 999999998753
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=132.00 Aligned_cols=215 Identities=14% Similarity=0.066 Sum_probs=128.3
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCC-cccHHHHHHHHCCcEEEEcCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR-IGSTSVLLWLARGFAILGGPTTPIIG 725 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~G~~V~~~~~~~~~G 725 (954)
.+|.+++...+-++. ...|+||++||.+..... .|.. +....+..| +++|.|++ .+..|
T Consensus 18 ~~~~~l~y~~~G~~~------~~~p~vvllHG~~~~~~~----------~~~~~~~~~~~~~L-~~~~~vi~---~D~~G 77 (286)
T 2qmq_A 18 TPYGSVTFTVYGTPK------PKRPAIFTYHDVGLNYKS----------CFQPLFRFGDMQEI-IQNFVRVH---VDAPG 77 (286)
T ss_dssp ETTEEEEEEEESCCC------TTCCEEEEECCTTCCHHH----------HHHHHHTSHHHHHH-HTTSCEEE---EECTT
T ss_pred cCCeEEEEEeccCCC------CCCCeEEEeCCCCCCchh----------hhhhhhhhchhHHH-hcCCCEEE---ecCCC
Confidence 367888877764321 125889999996421100 0000 000023344 45799999 45556
Q ss_pred CCCccc--chh----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC
Q 002194 726 EGDEEA--NDR----FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (954)
Q Consensus 726 ~G~~~~--~~~----~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~ 799 (954)
+|.+.. +.. ......+|+.++++.+ +.+++.++|||+||.+++.++.++|++++++|++++.......
T Consensus 78 ~G~s~~~~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 151 (286)
T 2qmq_A 78 MEEGAPVFPLGYQYPSLDQLADMIPCILQYL------NFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGW 151 (286)
T ss_dssp TSTTCCCCCTTCCCCCHHHHHHTHHHHHHHH------TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCH
T ss_pred CCCCCCCCCCCCCccCHHHHHHHHHHHHHHh------CCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCCcccch
Confidence 655432 221 3566677777777665 2358999999999999999999999999999999985432110
Q ss_pred C--------------------CCCcccc----chhhhc-------------HHHHH----hcCc----ccccCCCCCCEE
Q 002194 800 P--------------------FGFQNED----RTLWEA-------------TSTYV----EMSP----FMSANKLKKPIL 834 (954)
Q Consensus 800 ~--------------------~~~~~~~----~~~~~~-------------~~~~~----~~sp----~~~~~~~~~P~L 834 (954)
. ..+.... ....+. ...+. .... ...+.++++|+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l 231 (286)
T 2qmq_A 152 MDWAAHKLTGLTSSIPDMILGHLFSQEELSGNSELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKCPVM 231 (286)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHSCHHHHHTTCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCCCCCSEETTEECCCSCEE
T ss_pred hhhhhhhhccccccchHHHHHHHhcCCCCCcchHHHHHHHHHHHhcCCcchHHHHHHHHhhhhhhhhhhchhccCCCCEE
Confidence 0 0000000 000000 00010 0011 124567899999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHHhCCC-cEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 835 LVHGEEDNNSGTLTMQSDRFFNALKGHGA-LCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 835 ii~G~~D~~v~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+++|++|..+| .. .+.++.... .+++++++++||... .+....+.+.|.+||+
T Consensus 232 ii~G~~D~~~~---~~----~~~~~~~~~~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 285 (286)
T 2qmq_A 232 LVVGDQAPHED---AV----VECNSKLDPTQTSFLKMADSGGQPQ-LTQPGKLTEAFKYFLQ 285 (286)
T ss_dssp EEEETTSTTHH---HH----HHHHHHSCGGGEEEEEETTCTTCHH-HHCHHHHHHHHHHHHC
T ss_pred EEecCCCcccc---HH----HHHHHHhcCCCceEEEeCCCCCccc-ccChHHHHHHHHHHhc
Confidence 99999998864 22 233333333 589999999999864 4556777888888874
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-10 Score=139.95 Aligned_cols=290 Identities=10% Similarity=0.052 Sum_probs=172.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc-----e-eecccCCCccccccccceeEecCCeEEEEEe
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-----A-RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~-----~-~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (954)
..+..++|+||+..++.+.. .+ ..|.++++..+. . +.+..+... +..++|+|||++|+...
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s------~D--~~i~~W~~~~~~~~~~~~~~~~~~h~~~-----v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSAS------RD--KSIILWKLTKDDKAYGVAQRRLTGHSHF-----VEDVVLSSDGQFALSGS 449 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEE------TT--SEEEEEECCCSTTCSCEEEEEEECCSSC-----EEEEEECTTSSEEEEEE
T ss_pred ceeEEEEecCCCCCEEEEEe------CC--CcEEEEEccCCCcccccccceecCCCCc-----EEEEEECCCCCEEEEEe
Confidence 46888999998755554432 33 455555554321 1 233333322 67899999999998761
Q ss_pred cCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-cccccccc
Q 002194 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDP 339 (954)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~-~~~~~~~~ 339 (954)
....|.++|+ ++. .+.+... ..+..++|
T Consensus 450 -------------------------------------------------~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~ 480 (694)
T 3dm0_A 450 -------------------------------------------------WDGELRLWDLAAGVSTRRFVGHTKDVLSVAF 480 (694)
T ss_dssp -------------------------------------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred -------------------------------------------------CCCcEEEEECCCCcceeEEeCCCCCEEEEEE
Confidence 1235777788 664 3444444 77889999
Q ss_pred CCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 340 SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
||||++|+..+.+ +.|.+||..+.....+.... .++...+..++|+|++..-.+.+.
T Consensus 481 s~~~~~l~s~s~D-------------~~i~iwd~~~~~~~~~~~~~---------~~h~~~v~~~~~~~~~~~~~l~s~- 537 (694)
T 3dm0_A 481 SLDNRQIVSASRD-------------RTIKLWNTLGECKYTISEGG---------EGHRDWVSCVRFSPNTLQPTIVSA- 537 (694)
T ss_dssp CTTSSCEEEEETT-------------SCEEEECTTSCEEEEECSST---------TSCSSCEEEEEECSCSSSCEEEEE-
T ss_pred eCCCCEEEEEeCC-------------CEEEEEECCCCcceeeccCC---------CCCCCcEEEEEEeCCCCcceEEEE-
Confidence 9999999988744 38999998766544443211 012234567899999854333211
Q ss_pred ccCCCccccccCCCeEEEEecCCCCCCC-ceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002194 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 498 (954)
+..+.|.+|++ ..++ ...+..+...+..++|+|||+.|+..+.++. .+| +|+.++ ..+
T Consensus 538 ----------s~d~~v~vwd~---~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~--i~i--wd~~~~----~~~ 596 (694)
T 3dm0_A 538 ----------SWDKTVKVWNL---SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV--VLL--WDLAEG----KKL 596 (694)
T ss_dssp ----------ETTSCEEEEET---TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB--CEE--EETTTT----EEE
T ss_pred ----------eCCCeEEEEEC---CCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe--EEE--EECCCC----ceE
Confidence 33557889996 4433 3455666777889999999999888765543 444 455553 222
Q ss_pred ecC-CCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccc
Q 002194 499 FDR-SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 577 (954)
Q Consensus 499 ~~~-~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 577 (954)
... ....+.. +.|+|++.+++.... ..|++||+.+++..............
T Consensus 597 ~~~~~~~~v~~------~~~sp~~~~l~~~~~----------------------~~i~iwd~~~~~~~~~~~~~~~~~~~ 648 (694)
T 3dm0_A 597 YSLEANSVIHA------LCFSPNRYWLCAATE----------------------HGIKIWDLESKSIVEDLKVDLKAEAE 648 (694)
T ss_dssp ECCBCSSCEEE------EEECSSSSEEEEEET----------------------TEEEEEETTTTEEEEEECCCCC----
T ss_pred EEecCCCcEEE------EEEcCCCcEEEEEcC----------------------CCEEEEECCCCCChhhhccccccccc
Confidence 211 1111222 789999988876541 23899999988765443322110000
Q ss_pred e-----eE---EeccCCccccccccCCEEEEEEecCCCCceEEEEEC
Q 002194 578 T-----TV---ALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSW 616 (954)
Q Consensus 578 ~-----~~---~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~ 616 (954)
. .. .....-...+|||||+.|+.... -..+.+|++
T Consensus 649 ~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~----Dg~i~iW~i 691 (694)
T 3dm0_A 649 KADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT----DGVIRVWGI 691 (694)
T ss_dssp ------------CCCCEEEEEECTTSSEEEEEET----TSEEEEEEC
T ss_pred cccccccccCCceeEEeeeEEEcCCCCEEEEEcC----CCeEEEEec
Confidence 0 00 00000012579999998764333 245888875
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.9e-11 Score=135.97 Aligned_cols=247 Identities=9% Similarity=0.032 Sum_probs=141.3
Q ss_pred CCCCceecCCC---------CEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCce-
Q 002194 110 PLPALSFSPQR---------DKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE- 179 (954)
Q Consensus 110 ~~~~~~~SPDG---------~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~- 179 (954)
.+..++|+|++ ++||........ ...+++.......+.+..|.||++.+ ++....
T Consensus 135 ~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------~~~~~~~~~laS~s~D~tI~iWd~~~-~~~~~~~ 199 (524)
T 2j04_B 135 LVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------EPLNEHLEMFDKEKHSSCIQIFKMNT-STLHCVK 199 (524)
T ss_dssp --CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------CEEEEEEEEET-TTCCEEE
T ss_pred ceeEEEecccCCCCccCcCCeEEEEEEecccC--------------CccchhhhhhccCCCCceEEEEEccC-CCCCceE
Confidence 57789999998 788887653110 00112222222334446899999854 211111
Q ss_pred -eeeecCCCCCcccceeecCC------CCeEEEEEeeccccCCCCceEEEEEECCCCcee------------ecccCCCc
Q 002194 180 -IEIQGFPDGAKLNFVTWSQD------GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR------------PLFQSPDI 240 (954)
Q Consensus 180 -~~lt~~~~~~~~~~~~wSPD------G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~------------~lt~~~~~ 240 (954)
..+.. +...+..++|+|+ |+.||..+ .+ ..|.++++.+++.. .+.. ..
T Consensus 200 ~~~l~~--~~~~V~~v~wsp~~~~~~~~~~LAs~s-------~D--gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~-h~- 266 (524)
T 2j04_B 200 VQTIVH--SFGEVWDLKWHEGCHAPHLVGCLSFVS-------QE--GTINFLEIIDNATDVHVFKMCEKPSLTLSL-AD- 266 (524)
T ss_dssp EEEEEE--CCCSEEEEEECSSCCCSSSSCEEEEEE-------TT--SCEEEEECCCCSSSSSEEECCCSCSEEECC-TT-
T ss_pred EEEEEe--cCCcEEEEEECCCCCCCCCCceEEEEe-------cC--CeEEEEEcCCCccccccceeecCceEEEEc-CC-
Confidence 12332 2235788999997 56777654 23 34555566554321 1111 11
Q ss_pred cccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEE
Q 002194 241 YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (954)
Q Consensus 241 ~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~ 320 (954)
..+..++|++++ .|+... ..+.|.++|
T Consensus 267 ---~~v~sv~~s~~~-~lasgs-------------------------------------------------~DgtV~lWD 293 (524)
T 2j04_B 267 ---SLITTFDFLSPT-TVVCGF-------------------------------------------------KNGFVAEFD 293 (524)
T ss_dssp ---TCEEEEEESSSS-EEEEEE-------------------------------------------------TTSEEEEEE
T ss_pred ---CCEEEEEecCCC-eEEEEe-------------------------------------------------CCCEEEEEE
Confidence 226789999876 455441 224566778
Q ss_pred e-CCc-e-eEcCCC-cccccc--ccCCCC-cEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCc
Q 002194 321 L-DGT-V-KEIGPP-AVYTSL--DPSPDE-KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPI 392 (954)
Q Consensus 321 ~-~G~-~-~~l~~~-~~~~~~--~~SpDG-k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~ 392 (954)
+ ++. . ..+... ..+.++ .|+||| +.|+..+.+ +.+.|||+...+. ..+..+...
T Consensus 294 ~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D-------------~tvklWD~~~~~~~~~~~~~~~~----- 355 (524)
T 2j04_B 294 LTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVD-------------GYFYIFNPKDIATTKTTVSRFRG----- 355 (524)
T ss_dssp TTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETT-------------SEEEEECGGGHHHHCEEEEECSC-----
T ss_pred CCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccC-------------CeEEEEECCCCCccccccccccc-----
Confidence 7 553 2 223333 667777 689999 677777633 3899999975432 222211000
Q ss_pred cccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEE
Q 002194 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVY 472 (954)
Q Consensus 393 ~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~ 472 (954)
..+..++|+|||+.++.. +..+.|.+|++ ..+.....+..+...+..++|||||+.|+.
T Consensus 356 ------~~v~~v~fsp~~~~l~s~-------------~~d~tv~lwd~--~~~~~~~~l~gH~~~V~sva~Sp~g~~l~S 414 (524)
T 2j04_B 356 ------SNLVPVVYCPQIYSYIYS-------------DGASSLRAVPS--RAAFAVHPLVSRETTITAIGVSRLHPMVLA 414 (524)
T ss_dssp ------CSCCCEEEETTTTEEEEE-------------CSSSEEEEEET--TCTTCCEEEEECSSCEEEEECCSSCCBCEE
T ss_pred ------CcccceEeCCCcCeEEEe-------------CCCCcEEEEEC--cccccceeeecCCCceEEEEeCCCCCeEEE
Confidence 124578999999875544 33557889986 344445667778888999999999999887
Q ss_pred EEec
Q 002194 473 ESWY 476 (954)
Q Consensus 473 ~~~~ 476 (954)
++.+
T Consensus 415 gs~D 418 (524)
T 2j04_B 415 GSAD 418 (524)
T ss_dssp EETT
T ss_pred EECC
Confidence 7644
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=8e-12 Score=135.79 Aligned_cols=210 Identities=11% Similarity=0.007 Sum_probs=124.5
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+++.... + .++.|.||++||.+.... .|.. .+..| +..|.|++ .|.+|+
T Consensus 28 ~~g~~l~y~~~---G-----~g~~~~vvllHG~~~~~~-----------~w~~----~~~~L-~~~~~via---~Dl~Gh 80 (318)
T 2psd_A 28 VLDSFINYYDS---E-----KHAENAVIFLHGNATSSY-----------LWRH----VVPHI-EPVARCII---PDLIGM 80 (318)
T ss_dssp ETTEEEEEEEC---C-----SCTTSEEEEECCTTCCGG-----------GGTT----TGGGT-TTTSEEEE---ECCTTS
T ss_pred eCCeEEEEEEc---C-----CCCCCeEEEECCCCCcHH-----------HHHH----HHHHh-hhcCeEEE---EeCCCC
Confidence 47777765442 1 122468999999743211 1211 12233 34579999 677788
Q ss_pred CCcccch---hhHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC----C
Q 002194 727 GDEEAND---RFVEQLVACAEAAVEEVVRRGVAHP-SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT----L 798 (954)
Q Consensus 727 G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~-~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~----~ 798 (954)
|.+.... .......+|+.+.++.+ +. +++.|+||||||.+|+.+|.++|++++++|++++..... .
T Consensus 81 G~S~~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~ 154 (318)
T 2psd_A 81 GKSGKSGNGSYRLLDHYKYLTAWFELL------NLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDE 154 (318)
T ss_dssp TTCCCCTTSCCSHHHHHHHHHHHHTTS------CCCSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEECCSCBSCCTT
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHhc------CCCCCeEEEEEChhHHHHHHHHHhChHhhheEEEeccccCCccchhh
Confidence 8885431 12344455555444332 33 689999999999999999999999999999976532110 0
Q ss_pred CCCC------Cccc--------c-------------chh-hhcHHHHH-----------------hcCcc----------
Q 002194 799 TPFG------FQNE--------D-------------RTL-WEATSTYV-----------------EMSPF---------- 823 (954)
Q Consensus 799 ~~~~------~~~~--------~-------------~~~-~~~~~~~~-----------------~~sp~---------- 823 (954)
.+.. +... . ... .+....|. ..-+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (318)
T 2psd_A 155 WPDIEEDIALIKSEEGEKMVLENNFFVETVLPSKIMRKLEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQ 234 (318)
T ss_dssp SCSCHHHHHHHHSTHHHHHHTTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHTCCBTTTSCHHHHH
T ss_pred hhhHHHHHHHHhcccchhhhhcchHHHHhhccccccccCCHHHHHHHHHhhcCccccccchhcccccccccccccchhHH
Confidence 0000 0000 0 000 00000000 00000
Q ss_pred ------cccCCC-CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 824 ------MSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 824 ------~~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
..+.++ ++|+|+|+|++| .++ . .+.++.+.+ ...+++++ ++||... .+..+.+.+.|.+||.+
T Consensus 235 ~~~~~~~~l~~i~~~P~Lvi~G~~D-~~~--~-~~~~~~~~~----~~~~~~~i-~~gH~~~-~e~p~~~~~~i~~fl~~ 304 (318)
T 2psd_A 235 IVRNYNAYLRASDDLPKLFIESDPG-FFS--N-AIVEGAKKF----PNTEFVKV-KGLHFLQ-EDAPDEMGKYIKSFVER 304 (318)
T ss_dssp HHHHHHHHHHTCTTSCEEEEEEEEC-SSH--H-HHHHHHTTS----SSEEEEEE-EESSSGG-GTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCeEEEEeccc-cCc--H-HHHHHHHhC----CCcEEEEe-cCCCCCH-hhCHHHHHHHHHHHHHH
Confidence 123456 899999999999 876 5 555554433 23577777 6799764 66788899999999987
Q ss_pred hcc
Q 002194 897 YCV 899 (954)
Q Consensus 897 ~l~ 899 (954)
...
T Consensus 305 ~~~ 307 (318)
T 2psd_A 305 VLK 307 (318)
T ss_dssp HHC
T ss_pred hhc
Confidence 643
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.6e-13 Score=141.48 Aligned_cols=224 Identities=14% Similarity=0.012 Sum_probs=115.6
Q ss_pred ceEEEEEEcCCCeE-EEEEEEcCCCCCCCC-----CCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHC
Q 002194 638 QKELIKYQRKDGVQ-LSATLYLPPGYDPSK-----DGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR 711 (954)
Q Consensus 638 ~~~~~~~~~~~g~~-l~~~l~~P~~~~~~~-----~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 711 (954)
..|.+.|++.++.. ...|+..+.. .+.. ....|.||++||..... ..| ..++..|++
T Consensus 14 ~~~~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lvllHG~~~~~-----------~~~----~~l~~~L~~- 76 (280)
T 3qmv_A 14 GTENLYFQSNALLSQRSAWFPRPVA-APAAEPPDPAAAPLRLVCFPYAGGTV-----------SAF----RGWQERLGD- 76 (280)
T ss_dssp --------------CHHHHSCCCCC-CCCCCCCCTTTCSEEEEEECCTTCCG-----------GGG----TTHHHHHCT-
T ss_pred CcceeeeecchhhhhcchheecCCC-CCcccccccCCCCceEEEECCCCCCh-----------HHH----HHHHHhcCC-
Confidence 45677777766532 2233332211 1111 11138899999964211 112 124445554
Q ss_pred CcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCccc----
Q 002194 712 GFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC---- 785 (954)
Q Consensus 712 G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~---- 785 (954)
||.|++ .+..|+|.+.... .......+|+.+.++.+. ..+++.|+||||||.+|+.++.++|+++.
T Consensus 77 ~~~v~~---~D~~G~G~S~~~~~~~~~~~~a~~~~~~l~~~~-----~~~~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~ 148 (280)
T 3qmv_A 77 EVAVVP---VQLPGRGLRLRERPYDTMEPLAEAVADALEEHR-----LTHDYALFGHSMGALLAYEVACVLRRRGAPRPR 148 (280)
T ss_dssp TEEEEE---CCCTTSGGGTTSCCCCSHHHHHHHHHHHHHHTT-----CSSSEEEEEETHHHHHHHHHHHHHHHTTCCCCS
T ss_pred CceEEE---EeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-----CCCCEEEEEeCHhHHHHHHHHHHHHHcCCCCce
Confidence 999999 6677888764332 234555666666555431 34689999999999999999999887665
Q ss_pred EEEEeccCCCCCCCCCC---Ccccc--------------------------chhhhcHHHHHhcCcccccCCCCCCEEEE
Q 002194 786 CGIARSGAYNRTLTPFG---FQNED--------------------------RTLWEATSTYVEMSPFMSANKLKKPILLV 836 (954)
Q Consensus 786 a~v~~~~~~~~~~~~~~---~~~~~--------------------------~~~~~~~~~~~~~sp~~~~~~~~~P~Lii 836 (954)
.+++.+........... ..... ............+.+ ..+.++++|+|++
T Consensus 149 ~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~P~l~i 227 (280)
T 3qmv_A 149 HLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDRRLPVLRADLRACERYDW-HPRPPLDCPTTAF 227 (280)
T ss_dssp CEEEESCCCGGGCSCCCGGGSCHHHHHHHHHHHTCCC---------CCTTHHHHHHHHHHHHTCCC-CCCCCBCSCEEEE
T ss_pred EEEEECCCCCCCcCcccccccCHHHHHHHHHHhCCCChhhhcCHHHHHHHHHHHHHHHHHHHhccc-cCCCceecCeEEE
Confidence 55555432110000000 00000 000000111111111 1246788999999
Q ss_pred EeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCC-cccHHHHHHHHHHH
Q 002194 837 HGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA-RESIMHVLWETDRW 893 (954)
Q Consensus 837 ~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~-~~~~~~~~~~i~~f 893 (954)
+|++|..++ ...+.++.+.+ ...++++++++ ||.... .+....+.+.|.+|
T Consensus 228 ~G~~D~~~~--~~~~~~~~~~~---~~~~~~~~~~g-gH~~~~~~~~~~~~~~~i~~~ 279 (280)
T 3qmv_A 228 SAAADPIAT--PEMVEAWRPYT---TGSFLRRHLPG-NHFFLNGGPSRDRLLAHLGTE 279 (280)
T ss_dssp EEEECSSSC--HHHHHTTGGGB---SSCEEEEEEEE-ETTGGGSSHHHHHHHHHHHTT
T ss_pred EecCCCCcC--hHHHHHHHHhc---CCceEEEEecC-CCeEEcCchhHHHHHHHHHhh
Confidence 999999998 77776665543 23467888886 898643 24444555555544
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-10 Score=122.36 Aligned_cols=273 Identities=13% Similarity=0.062 Sum_probs=166.8
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+....| |||+.|+... ....|.++++++++........... +..++|+|||+.|+...
T Consensus 19 ~~v~~~~~-~~~~~l~s~~---------~dg~v~vw~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~------ 78 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVS---------RDGTVRLWSKDDQWLGTVVYTGQGF----LNSVCYDSEKELLLFGG------ 78 (313)
T ss_dssp SCEEEEEE-EETTEEEEEE---------TTSEEEEEEESSSEEEEEEEECSSC----EEEEEEETTTTEEEEEE------
T ss_pred CCcEEEEe-cCCCEEEEEE---------cCCcEEEEECCCCEEEEEeecCCcc----EEEEEECCCCCEEEEec------
Confidence 46888899 9999988754 2456777787777655444333322 77899999999998761
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC---c-eeEcCCC-ccccccccCCC
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG---T-VKEIGPP-AVYTSLDPSPD 342 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G---~-~~~l~~~-~~~~~~~~SpD 342 (954)
....|..+++ +. + ...+... ..+..+.| +
T Consensus 79 -------------------------------------------~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~ 113 (313)
T 3odt_A 79 -------------------------------------------KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--Q 113 (313)
T ss_dssp -------------------------------------------TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--E
T ss_pred -------------------------------------------CCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--c
Confidence 1123445555 22 1 2333333 55666677 6
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeecc-CCCCceEEEEecc
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS-DKPSTLYWAETQD 421 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wsp-Dg~~i~~~~~~~~ 421 (954)
++.|+..+.+ +.+.+|| .+.....+..+. ..+..+.|+| +++.++..
T Consensus 114 ~~~l~~~~~d-------------~~i~~~d-~~~~~~~~~~~~-------------~~v~~~~~~~~~~~~l~~~----- 161 (313)
T 3odt_A 114 DGVVISGSWD-------------KTAKVWK-EGSLVYNLQAHN-------------ASVWDAKVVSFSENKFLTA----- 161 (313)
T ss_dssp TTEEEEEETT-------------SEEEEEE-TTEEEEEEECCS-------------SCEEEEEEEETTTTEEEEE-----
T ss_pred CCEEEEEeCC-------------CCEEEEc-CCcEEEecccCC-------------CceeEEEEccCCCCEEEEE-----
Confidence 7888877633 3899999 433334433322 2345678888 77765554
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCceEEee-cccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEec
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD 500 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~ 500 (954)
+..+.+.+|+. +.....+.. ....+..++|+|+++ ++....+ ..|.++|+.++ +......
T Consensus 162 --------~~d~~i~i~d~----~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d----g~i~i~d~~~~--~~~~~~~ 222 (313)
T 3odt_A 162 --------SADKTIKLWQN----DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSND----GLIKLVDMHTG--DVLRTYE 222 (313)
T ss_dssp --------ETTSCEEEEET----TEEEEEECSSCSSCEEEEEEEETTE-EEEEETT----SEEEEEETTTC--CEEEEEE
T ss_pred --------ECCCCEEEEec----CceEEEEeccCcccEEEEEEcCCCe-EEEccCC----CeEEEEECCch--hhhhhhh
Confidence 33557888883 333334433 556678899999999 5554433 34777777764 3344344
Q ss_pred CCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeE
Q 002194 501 RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTV 580 (954)
Q Consensus 501 ~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~ 580 (954)
.+...+.. +.|+|+|+ ++... ....|++||+.+++.......... .+.
T Consensus 223 ~~~~~i~~------~~~~~~~~-l~~~~---------------------~dg~v~iwd~~~~~~~~~~~~~~~----~i~ 270 (313)
T 3odt_A 223 GHESFVYC------IKLLPNGD-IVSCG---------------------EDRTVRIWSKENGSLKQVITLPAI----SIW 270 (313)
T ss_dssp CCSSCEEE------EEECTTSC-EEEEE---------------------TTSEEEEECTTTCCEEEEEECSSS----CEE
T ss_pred cCCceEEE------EEEecCCC-EEEEe---------------------cCCEEEEEECCCCceeEEEeccCc----eEE
Confidence 34333443 78999995 44443 123599999998887665544321 112
Q ss_pred EeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCce
Q 002194 581 ALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (954)
Q Consensus 581 ~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~ 621 (954)
...|++|++ ++. ... ...+++|++.+++.
T Consensus 271 -------~~~~~~~~~-~~~-~~~---dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 271 -------SVDCMSNGD-IIV-GSS---DNLVRIFSQEKSRW 299 (313)
T ss_dssp -------EEEECTTSC-EEE-EET---TSCEEEEESCGGGC
T ss_pred -------EEEEccCCC-EEE-EeC---CCcEEEEeCCCCce
Confidence 246899998 333 222 35689999877654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-10 Score=123.68 Aligned_cols=226 Identities=12% Similarity=0.126 Sum_probs=135.7
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCC--ce-eecccCCCccccccccceeEecC--CeEEEEEec
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KA-RPLFQSPDIYLNAIFDNFVWVNN--STLLVCTIP 263 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g--~~-~~lt~~~~~~~~~~~~~~~wspD--G~~l~~~~~ 263 (954)
..+...+|||||++||... . ...|.+++++++ +. ..+..+.. .+..++|+++ |++|+...
T Consensus 10 ~~V~~~~~s~~g~~las~s-------~--D~~v~iw~~~~~~~~~~~~l~gH~~-----~V~~v~~s~~~~g~~l~s~s- 74 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCS-------S--DKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCS- 74 (297)
T ss_dssp SCEEEEEECTTSSEEEEEE-------T--TSCEEEEEBCSSCBCCCEEECCCSS-----CEEEEEECCGGGCSEEEEEE-
T ss_pred CceEEEEECCCCCEEEEEe-------C--CCEEEEEecCCCCcEEEEEEccccC-----CeEEEEecCCCcCCEEEEEc-
Confidence 3678899999999998865 2 345555566543 22 22322222 2678999864 88888661
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc---eeEcCCC-ccccccc
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLD 338 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~---~~~l~~~-~~~~~~~ 338 (954)
....|.++++ +|. ...+... ..+..++
T Consensus 75 ------------------------------------------------~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~ 106 (297)
T 2pm7_B 75 ------------------------------------------------YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQ 106 (297)
T ss_dssp ------------------------------------------------TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEE
T ss_pred ------------------------------------------------CCCEEEEEEcCCCceEEEEEeecCCCceeEEE
Confidence 1234666677 553 2233333 6788899
Q ss_pred cCCC--CcEEEEEeecCCcccccccCCCCcceEEEeccCce-E--EEeccCCCcccCCccccccccCccceeeccCC---
Q 002194 339 PSPD--EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-V--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDK--- 410 (954)
Q Consensus 339 ~SpD--Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~--~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg--- 410 (954)
|+|| |+.|+..+.+ +.+.+||+..+. . ..+. +....+..++|+|++
T Consensus 107 ~~p~~~g~~l~s~s~d-------------~~v~~wd~~~~~~~~~~~~~-------------~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 107 WAPHEYGPMLLVASSD-------------GKVSVVEFKENGTTSPIIID-------------AHAIGVNSASWAPATIEE 160 (297)
T ss_dssp ECCGGGCSEEEEEETT-------------SEEEEEEBCSSSCBCCEEEE-------------CCSSCEEEEEECCCC---
T ss_pred eCcCCCCcEEEEEECC-------------CcEEEEEecCCCceeeeeee-------------cccCccceEeecCCcccc
Confidence 9998 8888887743 389999987542 1 1111 222456778999974
Q ss_pred ----------CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCC-----ceEEeecccccCceeeccCC---ceEEE
Q 002194 411 ----------PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-----PEILHKLDLRYGGISWCDDS---LALVY 472 (954)
Q Consensus 411 ----------~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-----~~~l~~~~~~~~~~~~spDg---~~l~~ 472 (954)
+.|+.. +..+.|.+|++ ..++ ...+..+...+..++|+|++ +.|+.
T Consensus 161 ~~~~~~~~~~~~l~sg-------------s~D~~v~lwd~---~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTG-------------GADNLVKIWKY---NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp ---------CCEEEEE-------------ETTSCEEEEEE---ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred cccCCCCCCcceEEEE-------------cCCCcEEEEEE---cCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence 323222 33457888885 3322 12344566678899999996 66666
Q ss_pred EEeccccceEEEEEcCCCCCCCcEEEe--cCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 473 ESWYKTRRTRTWVISPGSKDVAPRILF--DRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 473 ~~~~~~~~~~l~~~d~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.+.++. .+||.++...+. ....+. ......+.. ++|+|||++|+...
T Consensus 225 ~s~D~~--v~iWd~~~~~~~-~~~~~~~~~~~~~~v~~------~~~s~~g~~las~~ 273 (297)
T 2pm7_B 225 VSQDRT--CIIWTQDNEQGP-WKKTLLKEEKFPDVLWR------ASWSLSGNVLALSG 273 (297)
T ss_dssp EETTSC--EEEEEESSTTSC-CEEEESSSSCCSSCEEE------EEECSSSCCEEEEE
T ss_pred EECCCc--EEEEEeCCCCCc-cceeeeecccCCCcEEE------EEECCCCCEEEEEc
Confidence 655443 778877653321 111122 111222222 78999999998776
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-10 Score=128.38 Aligned_cols=264 Identities=13% Similarity=0.074 Sum_probs=159.9
Q ss_pred CCCCceecCC---CCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCce-eeeecC
Q 002194 110 PLPALSFSPQ---RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE-IEIQGF 185 (954)
Q Consensus 110 ~~~~~~~SPD---G~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~-~~lt~~ 185 (954)
.+..++|||| |++|+....+ +.|.+|++...+ ... ..+..
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~d---------------------------------g~i~iw~~~~~~--~~~~~~~~~- 84 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWA---------------------------------NDVRCWEVQDSG--QTIPKAQQM- 84 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETT---------------------------------SEEEEEEECTTS--CEEEEEEEE-
T ss_pred ceEEEEEcCCCCCceEEEEECCC---------------------------------CcEEEEEcCCCC--ceeEEEecc-
Confidence 5778999999 6899888765 579999996422 222 33433
Q ss_pred CCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeE--ecCCeEEEEEec
Q 002194 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW--VNNSTLLVCTIP 263 (954)
Q Consensus 186 ~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w--spDG~~l~~~~~ 263 (954)
+...+..+.|+|||+.|+.... ...|.++|+++++...+...... +..+.| +|||+.|+...
T Consensus 85 -h~~~v~~~~~~~~~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~l~~~~- 148 (368)
T 3mmy_A 85 -HTGPVLDVCWSDDGSKVFTASC---------DKTAKMWDLSSNQAIQIAQHDAP-----VKTIHWIKAPNYSCVMTGS- 148 (368)
T ss_dssp -CSSCEEEEEECTTSSEEEEEET---------TSEEEEEETTTTEEEEEEECSSC-----EEEEEEEECSSCEEEEEEE-
T ss_pred -ccCCEEEEEECcCCCEEEEEcC---------CCcEEEEEcCCCCceeeccccCc-----eEEEEEEeCCCCCEEEEcc-
Confidence 2346889999999999987552 45788889998887766544433 678999 89999888761
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCCccccccccCC
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPPAVYTSLDPSP 341 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~~~~~~~~~Sp 341 (954)
....|.++|+ +++. ..+..........++
T Consensus 149 ------------------------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~- 179 (368)
T 3mmy_A 149 ------------------------------------------------WDKTLKFWDTRSSNPMMVLQLPERCYCADVI- 179 (368)
T ss_dssp ------------------------------------------------TTSEEEEECSSCSSCSEEEECSSCEEEEEEE-
T ss_pred ------------------------------------------------CCCcEEEEECCCCcEEEEEecCCCceEEEec-
Confidence 1234777777 5543 333332333334444
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCceE--EEeccCCCcccCCccccccccCccceeeccCCCC----ceE
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS----TLY 415 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~--~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~----i~~ 415 (954)
+..++..... +.+.+|+++.... ..+.. ... .....+.+.+++.. ++.
T Consensus 180 -~~~~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~~~ 233 (368)
T 3mmy_A 180 -YPMAVVATAE-------------RGLIVYQLENQPSEFRRIES-PLK-----------HQHRCVAIFKDKQNKPTGFAL 233 (368)
T ss_dssp -TTEEEEEEGG-------------GCEEEEECSSSCEEEEECCC-SCS-----------SCEEEEEEEECTTSCEEEEEE
T ss_pred -CCeeEEEeCC-------------CcEEEEEeccccchhhhccc-ccc-----------CCCceEEEcccCCCCCCeEEE
Confidence 3455555432 2788999885432 22211 100 11123444444432 322
Q ss_pred EEEeccCCCccccccCCCeEEEEecCCCCCCC----ceEEeeccc------------ccCceeeccCCceEEEEEecccc
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG----PEILHKLDL------------RYGGISWCDDSLALVYESWYKTR 479 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~----~~~l~~~~~------------~~~~~~~spDg~~l~~~~~~~~~ 479 (954)
. +..+.+.+|++ .... ...+..+.. .+..++|+|||+.|+..+.++
T Consensus 234 ~-------------~~dg~i~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-- 295 (368)
T 3mmy_A 234 G-------------SIEGRVAIHYI---NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG-- 295 (368)
T ss_dssp E-------------ETTSEEEEEES---SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS--
T ss_pred e-------------cCCCcEEEEec---CCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC--
Confidence 2 33557788886 3221 223333222 477899999999998876543
Q ss_pred ceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 480 RTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 480 ~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.|.++|+.++ +.......+...+.. ++|+|||++|+...
T Consensus 296 --~i~iwd~~~~--~~~~~~~~~~~~v~~------~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 296 --RFSFWDKDAR--TKLKTSEQLDQPISA------CCFNHNGNIFAYAS 334 (368)
T ss_dssp --CEEEEETTTT--EEEEECCCCSSCEEE------EEECTTSSCEEEEE
T ss_pred --eEEEEECCCC--cEEEEecCCCCCceE------EEECCCCCeEEEEe
Confidence 2555666664 333333333333333 88999999999887
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-13 Score=148.45 Aligned_cols=197 Identities=11% Similarity=0.029 Sum_probs=118.5
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch-------hhHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-------RFVEQLVAC 742 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-------~~~~~~~~D 742 (954)
.|+||++||.+... ..|. ..+..|+ +||.|++ .+..|+|.+.... .......+|
T Consensus 25 ~p~vv~lHG~~~~~-----------~~~~----~~~~~l~-~g~~v~~---~D~~G~G~s~~~~~~~~~~~~~~~~~~~~ 85 (304)
T 3b12_A 25 GPALLLLHGFPQNL-----------HMWA----RVAPLLA-NEYTVVC---ADLRGYGGSSKPVGAPDHANYSFRAMASD 85 (304)
Confidence 47899999964211 1121 2334455 8999999 6667888875542 112334555
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC---------------------C
Q 002194 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP---------------------F 801 (954)
Q Consensus 743 ~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~---------------------~ 801 (954)
+.++++.+ +.+++.++|||+||.+++.++.++|++++++|++++........ .
T Consensus 86 l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (304)
T 3b12_A 86 QRELMRTL------GFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPTYVMFEEVDRFVARAYWHWYFLQQPAPY 159 (304)
Confidence 55555554 34589999999999999999999999999999998754311000 0
Q ss_pred ----------CCccc-c-c------hhh--hcHHHH-----------------Hhc---C----cccccCCCCCCEEEEE
Q 002194 802 ----------GFQNE-D-R------TLW--EATSTY-----------------VEM---S----PFMSANKLKKPILLVH 837 (954)
Q Consensus 802 ----------~~~~~-~-~------~~~--~~~~~~-----------------~~~---s----p~~~~~~~~~P~Lii~ 837 (954)
.+... . . ... +..+.+ ... + ....+.++++|+|+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~ 239 (304)
T 3b12_A 160 PEKVIGADPDTFYEGCLFGWGATGADGFDPEQLEEYRKQWRDPAAIHGSCCDYRAGGTIDFELDHGDLGRQVQCPALVFS 239 (304)
Confidence 00000 0 0 000 000000 000 0 0001567889999999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
|++|..++ +......+.+.+. +++++++ ++||... .++...+.+.|.+||++..
T Consensus 240 G~~D~~~~-~~~~~~~~~~~~~----~~~~~~i-~~gH~~~-~e~p~~~~~~i~~fl~~~~ 293 (304)
T 3b12_A 240 GSAGLMHS-LFEMQVVWAPRLA----NMRFASL-PGGHFFV-DRFPDDTARILREFLSDAR 293 (304)
Confidence 99996553 0333333333322 3577778 9999864 5666788888999998764
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-10 Score=127.32 Aligned_cols=230 Identities=13% Similarity=0.120 Sum_probs=139.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecC--CeEEEEEecCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN--STLLVCTIPLLR 266 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD--G~~l~~~~~~~~ 266 (954)
..+..++|||||++|+... .++...||-++..+++.......... .+..+.|+++ ++.|+...
T Consensus 12 ~~v~~~~~s~~~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~l~s~~---- 76 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCS-------SDKTIKIFEVEGETHKLIDTLTGHEG----PVWRVDWAHPKFGTILASCS---- 76 (379)
T ss_dssp CCEEEEEECSSSSEEEEEE-------TTSCEEEEEEETTEEEEEEEECCCSS----CEEEEEECCGGGCSEEEEEE----
T ss_pred ccEEEEEEcCCCCEEEEEE-------CCCcEEEEecCCCcceeeeEecCCCC----cEEEEEeCCCCCCCEEEEec----
Confidence 4688899999999998865 33444555443223333222222222 2678999977 88888661
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc---eeEcCCC-ccccccccCC
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLDPSP 341 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~---~~~l~~~-~~~~~~~~Sp 341 (954)
....|.++++ +++ ...+... ..+..++|+|
T Consensus 77 ---------------------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 111 (379)
T 3jrp_A 77 ---------------------------------------------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 111 (379)
T ss_dssp ---------------------------------------------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC
T ss_pred ---------------------------------------------cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCC
Confidence 1234666777 663 3334434 7788999999
Q ss_pred C--CcEEEEEeecCCcccccccCCCCcceEEEeccCceE---EEeccCCCcccCCccccccccCccceeecc--------
Q 002194 342 D--EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV---RELCDLPLAEDIPIAFNSVRKGMRSINWRS-------- 408 (954)
Q Consensus 342 D--Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~---~~l~~~~~~~~~p~~~~~~~~g~~~~~wsp-------- 408 (954)
+ |+.|+..+.+ +.+.+||+..... ..+.. ....+..+.|+|
T Consensus 112 ~~~~~~l~~~~~d-------------~~i~v~d~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~ 165 (379)
T 3jrp_A 112 HEYGPLLLVASSD-------------GKVSVVEFKENGTTSPIIIDA-------------HAIGVNSASWAPATIEEDGE 165 (379)
T ss_dssp GGGCSEEEEEETT-------------SEEEEEECCTTSCCCEEEEEC-------------CTTCEEEEEECCCC------
T ss_pred CCCCCEEEEecCC-------------CcEEEEecCCCCceeeEEecC-------------CCCceEEEEEcCcccccccc
Confidence 9 9999888743 3899999985421 11211 123456789999
Q ss_pred -----CCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc----eEEeecccccCceeeccC---CceEEEEEec
Q 002194 409 -----DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP----EILHKLDLRYGGISWCDD---SLALVYESWY 476 (954)
Q Consensus 409 -----Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~----~~l~~~~~~~~~~~~spD---g~~l~~~~~~ 476 (954)
|++.++.. +..+.|.+|++ ..+... ..+..+...+..++|+|| ++.|+....+
T Consensus 166 ~~~~~~~~~l~~~-------------~~dg~i~i~d~--~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 230 (379)
T 3jrp_A 166 HNGTKESRKFVTG-------------GADNLVKIWKY--NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230 (379)
T ss_dssp ----CTTCEEEEE-------------ETTSCEEEEEE--ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ccCCCCCCEEEEE-------------eCCCeEEEEEe--cCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence 57765554 33557888886 222222 223345666788999999 7777776544
Q ss_pred cccceEEEEEcCCCCCCCcEEEecC--CCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 477 KTRRTRTWVISPGSKDVAPRILFDR--SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 477 ~~~~~~l~~~d~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+. .+||.++..... ....+... ....+.. ++|+|||++|+...
T Consensus 231 g~--i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~------~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 231 RT--CIIWTQDNEQGP-WKKTLLKEEKFPDVLWR------ASWSLSGNVLALSG 275 (379)
T ss_dssp SC--EEEEEESSTTSC-CEEEESSSSCCSSCEEE------EEECSSSCCEEEEE
T ss_pred CE--EEEEeCCCCCcc-ceeeeeccccCCCcEEE------EEEcCCCCEEEEec
Confidence 33 667766544321 11222211 1122222 78999999988876
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.4e-11 Score=128.08 Aligned_cols=195 Identities=14% Similarity=0.120 Sum_probs=113.2
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~ 749 (954)
.|.||++||..... ..| ...+..|++.||.|++ .|.+|+|.+..... ..++++.+.+..
T Consensus 16 ~~~vvllHG~~~~~-----------~~w----~~~~~~L~~~~~~vi~---~Dl~GhG~S~~~~~---~~~~~~a~~l~~ 74 (264)
T 1r3d_A 16 TPLVVLVHGLLGSG-----------ADW----QPVLSHLARTQCAALT---LDLPGHGTNPERHC---DNFAEAVEMIEQ 74 (264)
T ss_dssp BCEEEEECCTTCCG-----------GGG----HHHHHHHTTSSCEEEE---ECCTTCSSCC----------CHHHHHHHH
T ss_pred CCcEEEEcCCCCCH-----------HHH----HHHHHHhcccCceEEE---ecCCCCCCCCCCCc---cCHHHHHHHHHH
Confidence 37899999963211 111 1344455558999999 67778888754321 122333333333
Q ss_pred HHHcCCCCCCcEEEEeeChHHHHHHH---HHHhCCCcccEEEEeccCCCCCCCC-----------CC--Cc----cc---
Q 002194 750 VVRRGVAHPSKIAVGGHSYGAFMTAN---LLAHAPHLFCCGIARSGAYNRTLTP-----------FG--FQ----NE--- 806 (954)
Q Consensus 750 l~~~~~~d~~ri~l~G~S~GG~~a~~---~a~~~p~~~~a~v~~~~~~~~~~~~-----------~~--~~----~~--- 806 (954)
+.+.-.++..++.++||||||.+++. ++.++|++++++|++++........ +. +. ..
T Consensus 75 ~l~~l~~~~~p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (264)
T 1r3d_A 75 TVQAHVTSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLS 154 (264)
T ss_dssp HHHTTCCTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHhCcCCCceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCCCCCCChhhhhhhhcccHHHHHHhccccHHHHHH
Confidence 33332233224999999999999999 7788999999999987643211000 00 00 00
Q ss_pred ---cchhhh-----c------------H----HHHHhc------CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHH
Q 002194 807 ---DRTLWE-----A------------T----STYVEM------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (954)
Q Consensus 807 ---~~~~~~-----~------------~----~~~~~~------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (954)
....+. . . ..+... +....+.++++|+|+++|++|..++ .+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-------~~~~ 227 (264)
T 1r3d_A 155 DWYQQAVFSSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKFQ-------QLAE 227 (264)
T ss_dssp HHTTSGGGTTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHHH-------HHHH
T ss_pred HHhhhhhhhccCHHHHHHHHHHHhhcchHHHHHHHHhhhhccCccHHHHHHhcCCCEEEEEECCCchHH-------HHHH
Confidence 000000 0 0 000000 1112345788999999999996431 2233
Q ss_pred HHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 857 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
.+. +++++++++||... .+..+.+.+.|.+|+.++.
T Consensus 228 ~~~-----~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~~ 263 (264)
T 1r3d_A 228 SSG-----LSYSQVAQAGHNVH-HEQPQAFAKIVQAMIHSII 263 (264)
T ss_dssp HHC-----SEEEEETTCCSCHH-HHCHHHHHHHHHHHHHHHC
T ss_pred HhC-----CcEEEcCCCCCchh-hcCHHHHHHHHHHHHHHhc
Confidence 321 46889999999863 5667888999999998753
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-09 Score=124.59 Aligned_cols=256 Identities=12% Similarity=0.085 Sum_probs=152.4
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
+.|.+|++.. + .....+.+ +...+....|+||+ .|+... ....|.++|+++++...........
T Consensus 142 g~i~vwd~~~-~--~~~~~~~~--h~~~V~~l~~~~~~-~l~s~s---------~dg~i~vwd~~~~~~~~~~~~h~~~- 205 (464)
T 3v7d_B 142 KMIRVYDSIN-K--KFLLQLSG--HDGGVWALKYAHGG-ILVSGS---------TDRTVRVWDIKKGCCTHVFEGHNST- 205 (464)
T ss_dssp SCEEEEETTT-T--EEEEEECC--CSSCEEEEEECSTT-EEEEEE---------TTSCEEEEETTTTEEEEEECCCSSC-
T ss_pred CcEEEEECCC-C--cEEEEEeC--CCcCEEEEEEcCCC-EEEEEe---------CCCCEEEEECCCCcEEEEECCCCCc-
Confidence 5899999854 2 22333433 33478899999998 555533 2456778888888765554433322
Q ss_pred cccccceeEe--cCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEE
Q 002194 243 NAIFDNFVWV--NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (954)
Q Consensus 243 ~~~~~~~~ws--pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~ 320 (954)
+..+.|+ +|++.|+....+. .|.+++
T Consensus 206 ---v~~l~~~~~~~~~~l~s~s~d~-------------------------------------------------~i~vwd 233 (464)
T 3v7d_B 206 ---VRCLDIVEYKNIKYIVTGSRDN-------------------------------------------------TLHVWK 233 (464)
T ss_dssp ---EEEEEEEESSSCEEEEEEETTS-------------------------------------------------CEEEEE
T ss_pred ---cEEEEEecCCCCCEEEEEcCCC-------------------------------------------------cEEEee
Confidence 6677787 6788888762211 122222
Q ss_pred e-CCc------------------------eeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc
Q 002194 321 L-DGT------------------------VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (954)
Q Consensus 321 ~-~G~------------------------~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~ 374 (954)
+ ++. ...+... ..+ .+++++|+.|+..+.+ +.+.+||+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~d-------------~~i~vwd~~ 298 (464)
T 3v7d_B 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYD-------------NTLIVWDVA 298 (464)
T ss_dssp CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE--EEEEEETTEEEEEETT-------------SCEEEEETT
T ss_pred CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE--EEEcCCCCEEEEEeCC-------------CeEEEEECC
Confidence 2 111 1111111 222 3458899999888743 389999998
Q ss_pred CceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEee
Q 002194 375 GIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK 453 (954)
Q Consensus 375 g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~ 453 (954)
.++. ..+..+ ...+..+.|+|||+.++.. +..+.|.+|++ .++.....+..
T Consensus 299 ~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~sg-------------~~dg~i~vwd~--~~~~~~~~~~~ 350 (464)
T 3v7d_B 299 QMKCLYILSGH-------------TDRIYSTIYDHERKRCISA-------------SMDTTIRIWDL--ENGELMYTLQG 350 (464)
T ss_dssp TTEEEEEECCC-------------SSCEEEEEEETTTTEEEEE-------------ETTSCEEEEET--TTTEEEEEECC
T ss_pred CCcEEEEecCC-------------CCCEEEEEEcCCCCEEEEE-------------eCCCcEEEEEC--CCCcEEEEEeC
Confidence 6553 333222 1345679999999976654 34567999996 23333344555
Q ss_pred cccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccC
Q 002194 454 LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKEND 533 (954)
Q Consensus 454 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~ 533 (954)
+...+..+.|+ ++.|+..+.++ .|.++|+.++ ....... .... ...+.|+++|+.++...
T Consensus 351 h~~~v~~~~~~--~~~l~s~s~dg----~v~vwd~~~~--~~~~~~~-~~~~------~~~~~~~~~~~~l~~~~----- 410 (464)
T 3v7d_B 351 HTALVGLLRLS--DKFLVSAAADG----SIRGWDANDY--SRKFSYH-HTNL------SAITTFYVSDNILVSGS----- 410 (464)
T ss_dssp CSSCEEEEEEC--SSEEEEEETTS----EEEEEETTTC--CEEEEEE-CTTC------CCEEEEEECSSEEEEEE-----
T ss_pred CCCcEEEEEEc--CCEEEEEeCCC----cEEEEECCCC--ceeeeec-CCCC------ccEEEEEeCCCEEEEec-----
Confidence 66667778886 56676665443 3556666664 2222221 1111 11167999999887765
Q ss_pred CCcEEEEecCCCCCCCCCCeEEEEECCCCCeEE
Q 002194 534 EGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566 (954)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 566 (954)
...+++||+.+++...
T Consensus 411 -----------------dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 411 -----------------ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp -----------------TTEEEEEETTTCCEEE
T ss_pred -----------------CCeEEEEECCCCcEEe
Confidence 1249999999988654
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-12 Score=140.58 Aligned_cols=168 Identities=14% Similarity=0.155 Sum_probs=105.9
Q ss_pred HCCcEEEEcCCCCCCCCCCcc-cc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccE
Q 002194 710 ARGFAILGGPTTPIIGEGDEE-AN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (954)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~-~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a 786 (954)
++||.|++ .+.+|+|.+. .. ........+|+.+.++.+ ..+++.++|||+||.+++.++.++|+++++
T Consensus 67 ~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~ 137 (292)
T 3l80_A 67 PDSIGILT---IDAPNSGYSPVSNQANVGLRDWVNAILMIFEHF------KFQSYLLCVHSIGGFAALQIMNQSSKACLG 137 (292)
T ss_dssp CTTSEEEE---ECCTTSTTSCCCCCTTCCHHHHHHHHHHHHHHS------CCSEEEEEEETTHHHHHHHHHHHCSSEEEE
T ss_pred hhcCeEEE---EcCCCCCCCCCCCcccccHHHHHHHHHHHHHHh------CCCCeEEEEEchhHHHHHHHHHhCchheee
Confidence 37999999 6667888876 22 123455566665555443 335899999999999999999999999999
Q ss_pred EEEeccCCCCC----CCC------------CC----------------Ccccc-chhh----hcHHHHHhcCc-------
Q 002194 787 GIARSGAYNRT----LTP------------FG----------------FQNED-RTLW----EATSTYVEMSP------- 822 (954)
Q Consensus 787 ~v~~~~~~~~~----~~~------------~~----------------~~~~~-~~~~----~~~~~~~~~sp------- 822 (954)
+|+++|..... ... .. +.... ...+ .....+....+
T Consensus 138 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (292)
T 3l80_A 138 FIGLEPTTVMIYRAGFSSDLYPQLALRRQKLKTAADRLNYLKDLSRSHFSSQQFKQLWRGYDYCQRQLNDVQSLPDFKIR 217 (292)
T ss_dssp EEEESCCCHHHHHHCTTSSSSHHHHHHHHTCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTTTSTTCCSS
T ss_pred EEEECCCCcchhhhccccccchhHHHHHHHHhccCchhhhHhhccccccCHHHHHHhHHHHHHHHHHHHhhhhccccchh
Confidence 99998432100 000 00 00000 0000 00011112222
Q ss_pred --------ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 823 --------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 823 --------~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
...+.+ ++|+|+++|++|..++ .+ + ++.+.+ ...+ +++++++|... .+..+.+.+.|.+||
T Consensus 218 ~~~~~~~~~~~l~~-~~P~lii~g~~D~~~~--~~-~-~~~~~~----~~~~-~~~~~~gH~~~-~e~p~~~~~~i~~fl 286 (292)
T 3l80_A 218 LALGEEDFKTGISE-KIPSIVFSESFREKEY--LE-S-EYLNKH----TQTK-LILCGQHHYLH-WSETNSILEKVEQLL 286 (292)
T ss_dssp CCCCGGGGCCCCCT-TSCEEEEECGGGHHHH--HT-S-TTCCCC----TTCE-EEECCSSSCHH-HHCHHHHHHHHHHHH
T ss_pred hhhcchhhhhccCC-CCCEEEEEccCccccc--hH-H-HHhccC----CCce-eeeCCCCCcch-hhCHHHHHHHHHHHH
Confidence 123344 7899999999999876 55 4 444322 2245 88999999764 566778889999999
Q ss_pred HHh
Q 002194 895 QKY 897 (954)
Q Consensus 895 ~~~ 897 (954)
+++
T Consensus 287 ~~~ 289 (292)
T 3l80_A 287 SNH 289 (292)
T ss_dssp HTC
T ss_pred Hhc
Confidence 865
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-09 Score=122.71 Aligned_cols=291 Identities=8% Similarity=0.047 Sum_probs=163.7
Q ss_pred CcccceeecC-CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCC---------CccccccccceeEec-CCeE
Q 002194 189 AKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP---------DIYLNAIFDNFVWVN-NSTL 257 (954)
Q Consensus 189 ~~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~---------~~~~~~~~~~~~wsp-DG~~ 257 (954)
..+..+.|+| ||+.|+.... ...|.++++++++........ .......+..+.|+| +++.
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGS---------DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEET---------TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred CcEEEEEEecCCCCEEEEEcC---------CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 4789999999 9999888652 446777787776543332100 000122367899999 6666
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-cccc
Q 002194 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYT 335 (954)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~ 335 (954)
|+... ....|.++++ +++....... ..+.
T Consensus 115 l~s~~-------------------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (408)
T 4a11_B 115 FTSSS-------------------------------------------------FDKTLKVWDTNTLQTADVFNFEETVY 145 (408)
T ss_dssp EEEEE-------------------------------------------------TTSEEEEEETTTTEEEEEEECSSCEE
T ss_pred EEEEe-------------------------------------------------CCCeEEEeeCCCCccceeccCCCcee
Confidence 76551 1235777788 6654333322 4555
Q ss_pred ccccCC---CCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 336 SLDPSP---DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 336 ~~~~Sp---DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
...|+| +++.++....+ +.+.+||+..++ ...+..+ ...+..++|+||++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~-------------~~v~~~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 146 SHHMSPVSTKHCLVAVGTRG-------------PKVQLCDLKSGSCSHILQGH-------------RQEILAVSWSPRYD 199 (408)
T ss_dssp EEEECSSCSSCCEEEEEESS-------------SSEEEEESSSSCCCEEECCC-------------CSCEEEEEECSSCT
T ss_pred eeEeecCCCCCcEEEEEcCC-------------CeEEEEeCCCcceeeeecCC-------------CCcEEEEEECCCCC
Confidence 666666 55577777633 389999998553 3333322 13456799999999
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCC-CceEE---------------eecccccCceeeccCCceEEEEEe
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-GPEIL---------------HKLDLRYGGISWCDDSLALVYESW 475 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-~~~~l---------------~~~~~~~~~~~~spDg~~l~~~~~ 475 (954)
.+++.. +..+.|.+|++ ..+. ....+ ..+...+..++|+|||+.|+....
T Consensus 200 ~ll~~~------------~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 200 YILATA------------SADSRVKLWDV--RRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp TEEEEE------------ETTSCEEEEET--TCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred cEEEEE------------cCCCcEEEEEC--CCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 755441 23457888886 2222 22222 234455677899999999988765
Q ss_pred ccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeee-ccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeE
Q 002194 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRR-TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFL 554 (954)
Q Consensus 476 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 554 (954)
++ .|.++++.++. ......... ..... ......+ ...+..+++... ...|
T Consensus 266 dg----~i~vwd~~~~~-~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~---------------------~~~i 316 (408)
T 4a11_B 266 DN----RMRLWNSSNGE-NTLVNYGKV-CNNSK--KGLKFTVSCGCSSEFVFVPY---------------------GSTI 316 (408)
T ss_dssp TS----CEEEEETTTCC-BCCCCCCCC-CCCCS--SCCCCEECCSSSSCEEEEEE---------------------TTEE
T ss_pred CC----eEEEEECCCCc-cceeccccc-ccccc--ccceeEEecCCCceEEEEec---------------------CCEE
Confidence 43 25555666542 111111100 00000 0000112 222333333331 1359
Q ss_pred EEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCce
Q 002194 555 DLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (954)
Q Consensus 555 ~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~ 621 (954)
++||+.+++.......... .+. ..+|+||++.++..... ..+++|++.+++.
T Consensus 317 ~v~d~~~~~~~~~~~~~~~----~v~-------~~~~s~~~~~l~s~~~d----g~i~iw~~~~~~~ 368 (408)
T 4a11_B 317 AVYTVYSGEQITMLKGHYK----TVD-------CCVFQSNFQELYSGSRD----CNILAWVPSLYEP 368 (408)
T ss_dssp EEEETTTCCEEEEECCCSS----CEE-------EEEEETTTTEEEEEETT----SCEEEEEECC---
T ss_pred EEEECcCCcceeeeccCCC----eEE-------EEEEcCCCCEEEEECCC----CeEEEEeCCCCCc
Confidence 9999998887655543321 122 24689999877744433 4588999877653
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-10 Score=126.45 Aligned_cols=287 Identities=12% Similarity=0.105 Sum_probs=165.5
Q ss_pred CcccceeecCC---CCeEEEEEeeccccCCCCceEEEEEECCCCce-eecccCCCccccccccceeEecC----CeEEEE
Q 002194 189 AKLNFVTWSQD---GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLFQSPDIYLNAIFDNFVWVNN----STLLVC 260 (954)
Q Consensus 189 ~~~~~~~wSPD---G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wspD----G~~l~~ 260 (954)
..+...+|+|+ ++.++++... ...|.+++..+++. ..+...........+..++|+|| |++|+.
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~--------~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVG--------SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEE--------TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEecccCCCCceEEEECC--------CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 46888999985 6655555431 22677777775543 33321111111122678999999 677776
Q ss_pred EecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-cccccc
Q 002194 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSL 337 (954)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~-~~~~~~ 337 (954)
.. ....|.++++ +++. ..+... ..+..+
T Consensus 91 ~~-------------------------------------------------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~ 121 (366)
T 3k26_A 91 AG-------------------------------------------------SRGIIRIINPITMQCIKHYVGHGNAINEL 121 (366)
T ss_dssp EE-------------------------------------------------TTCEEEEECTTTCCEEEEEESCCSCEEEE
T ss_pred ec-------------------------------------------------CCCEEEEEEchhceEeeeecCCCCcEEEE
Confidence 51 1235777787 6643 334433 778899
Q ss_pred ccCC-CCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEE-eccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 338 DPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 338 ~~Sp-DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~-l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
.|+| |++.|+..+.+ +.|.+||+..++... +.... .....+..+.|+|||+.++.
T Consensus 122 ~~~~~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~ 178 (366)
T 3k26_A 122 KFHPRDPNLLLSVSKD-------------HALRLWNIQTDTLVAIFGGVE----------GHRDEVLSADYDLLGEKIMS 178 (366)
T ss_dssp EECSSCTTEEEEEETT-------------SCEEEEETTTTEEEEEECSTT----------SCSSCEEEEEECTTSSEEEE
T ss_pred EECCCCCCEEEEEeCC-------------CeEEEEEeecCeEEEEecccc----------cccCceeEEEECCCCCEEEE
Confidence 9999 89988887743 389999998665433 32111 12245578999999987665
Q ss_pred EEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEE----------------------------eecccccCceeeccC
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EIL----------------------------HKLDLRYGGISWCDD 466 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l----------------------------~~~~~~~~~~~~spD 466 (954)
. +..+.|.+|++ ..++. ..+ ..+...+..++|+
T Consensus 179 ~-------------~~dg~i~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 240 (366)
T 3k26_A 179 C-------------GMDHSLKLWRI---NSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-- 240 (366)
T ss_dssp E-------------ETTSCEEEEES---CSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred e-------------cCCCCEEEEEC---CCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence 5 33457888886 32211 111 1145566778888
Q ss_pred CceEEEEEeccccceEEEEEcCCCCC--------C--CcEEEecCCCCCccCCCCCCCeeeccC--CcEEEEEEeeccCC
Q 002194 467 SLALVYESWYKTRRTRTWVISPGSKD--------V--APRILFDRSSEDVYSDPGSPMMRRTST--GTYVIAKIKKENDE 534 (954)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~d~~~~~--------~--~~~~l~~~~~~~~~~~~~~~~~~~spd--G~~l~~~~~~~~~~ 534 (954)
++.|+..+.++ ..++|.+...... . ........+...+.. +.|+|| |++|+....
T Consensus 241 ~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~s~~~~~~~l~~~~~----- 307 (366)
T 3k26_A 241 GDLILSKSCEN--AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWY------MRFSMDFWQKMLALGNQ----- 307 (366)
T ss_dssp TTEEEEECSSS--EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSC------CCCEECTTSSEEEEECT-----
T ss_pred CCEEEEEecCC--EEEEEeCCCccccccccccCCcchheeccccccCCcEEE------EEEcCCCCCcEEEEEec-----
Confidence 66666665433 2555555432210 0 111222222222333 778999 998887751
Q ss_pred CcEEEEecCCCCCCCCCCeEEEEECCCCCeE-----EEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCc
Q 002194 535 GTYILLNGNGATPEGNIPFLDLFDINTGSKE-----RIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENT 609 (954)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~ 609 (954)
...|++||+.+++.. .+...... ..+. ..+|+||++.++.... ..
T Consensus 308 ----------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~---~~v~-------~~~~s~~~~~l~s~~~----dg 357 (366)
T 3k26_A 308 ----------------VGKLYVWDLEVEDPHKAKCTTLTHHKCG---AAIR-------QTSFSRDSSILIAVCD----DA 357 (366)
T ss_dssp ----------------TSCEEEEECCSSSGGGCEEEEECCTTCC---SCEE-------EEEECTTSSEEEEEET----TS
T ss_pred ----------------CCcEEEEECCCCCCccccceEEcccccC---CceE-------EEEeCCCCCeEEEEeC----CC
Confidence 224999999887532 22211000 0111 2578999987775443 24
Q ss_pred eEEEEEC
Q 002194 610 QYYIQSW 616 (954)
Q Consensus 610 ~l~~~~~ 616 (954)
.+++|++
T Consensus 358 ~i~iwd~ 364 (366)
T 3k26_A 358 SIWRWDR 364 (366)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 6888875
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-10 Score=127.88 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=67.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCC-CC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DG 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~-~~ 188 (954)
.+..++|||||++||....+ +.|.+|++.... ...+.+..+. +.
T Consensus 13 ~v~~~~~~~~~~~l~~~~~d---------------------------------g~i~iw~~~~~~--~~~~~~~~~~~~~ 57 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSD---------------------------------QHIKVFKLDKDT--SNWELSDSWRAHD 57 (351)
T ss_dssp CEEEEEECSSSSEEEEEETT---------------------------------SEEEEEEECSSS--CCEEEEEEEECCS
T ss_pred ceeEEEEcCCCCEEEEeeCC---------------------------------CeEEEEECCCCC--CcceecceeccCC
Confidence 46688999999999988875 579999996421 1112222121 23
Q ss_pred CcccceeecC--CCCeEEEEEeeccccCCCCceEEEEEECCCCc----------eeecccCCCccccccccceeEecC--
Q 002194 189 AKLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK----------ARPLFQSPDIYLNAIFDNFVWVNN-- 254 (954)
Q Consensus 189 ~~~~~~~wSP--DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~----------~~~lt~~~~~~~~~~~~~~~wspD-- 254 (954)
..+..+.|+| ||+.|+... . ...|.++|+++++ ...+..... .+..+.|+|+
T Consensus 58 ~~v~~~~~~~~~d~~~l~s~~-------~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~ 123 (351)
T 3f3f_A 58 SSIVAIDWASPEYGRIIASAS-------Y--DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG-----SLYSVKFAPAHL 123 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEE-------T--TSCEEEEEECTTSCTTSSCSEEEEEEECCCSS-----CEEEEEECCGGG
T ss_pred CcEEEEEEcCCCCCCEEEEEc-------C--CCeEEEEecCCCcccccccCcceeeeecccCC-----ceeEEEEcCCCC
Confidence 4788999999 698888765 2 3456666666553 122222222 2678999999
Q ss_pred CeEEEEE
Q 002194 255 STLLVCT 261 (954)
Q Consensus 255 G~~l~~~ 261 (954)
++.|+..
T Consensus 124 ~~~l~~~ 130 (351)
T 3f3f_A 124 GLKLACL 130 (351)
T ss_dssp CSEEEEE
T ss_pred CcEEEEe
Confidence 9988876
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-09 Score=123.29 Aligned_cols=282 Identities=12% Similarity=0.116 Sum_probs=170.3
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
.+.+-+.||+++ .||..- ...|+++|+.+|+..++...... ...+..++|+|||++|+...
T Consensus 106 ~y~~~l~wS~~n-~lAvgl----------d~tV~lWd~~tg~~~~~~~~~~~--~~~V~sv~fspdg~~lasgs------ 166 (420)
T 4gga_A 106 YYLNLVDWSSGN-VLAVAL----------DNSVYLWSASSGDILQLLQMEQP--GEYISSVAWIKEGNYLAVGT------ 166 (420)
T ss_dssp TTCBCEEECTTS-EEEEEE----------TTEEEEEETTTCCEEEEEECCST--TCCEEEEEECTTSSEEEEEE------
T ss_pred ccceeEEECCCC-EEEEEe----------CCEEEEEECCCCCEEEEEEecCC--CCcEEEEEECCCCCEEEEEE------
Confidence 356778999865 666543 45899999999988776543321 11277899999999998761
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee-EcCCC-ccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-~l~~~-~~~~~~~~SpDGk~ 345 (954)
....|.++++ +++.. .+... ..+. ++++|++.
T Consensus 167 -------------------------------------------~Dg~v~iWd~~~~~~~~~~~~h~~~v~--~~s~~~~~ 201 (420)
T 4gga_A 167 -------------------------------------------SSAEVQLWDVQQQKRLRNMTSHSARVG--SLSWNSYI 201 (420)
T ss_dssp -------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEE--EEEEETTE
T ss_pred -------------------------------------------CCCeEEEEEcCCCcEEEEEeCCCCceE--EEeeCCCE
Confidence 1234667787 66533 33333 3343 45567888
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCce--EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
|+..+.+ ..+.+|+..... ...+..+. ..+..+.|+|+|+.++..
T Consensus 202 l~sgs~d-------------~~i~~~d~~~~~~~~~~~~~h~-------------~~~~~~~~~~~g~~l~s~------- 248 (420)
T 4gga_A 202 LSSGSRS-------------GHIHHHDVRVAEHHVATLSGHS-------------QEVCGLRWAPDGRHLASG------- 248 (420)
T ss_dssp EEEEETT-------------SEEEEEETTSSSCEEEEEECCS-------------SCEEEEEECTTSSEEEEE-------
T ss_pred EEEEeCC-------------CceeEeeecccceeeEEecccc-------------cceeeeeecCCCCeeeee-------
Confidence 7776633 378889877432 23333221 334568899999976655
Q ss_pred CccccccCCCeEEEEecCCCCCC----CceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGE----GPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~----~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 499 (954)
...+.+.+++. ..+. ...........+..++|+|++..+++...... ...|.++|+.++ ......
T Consensus 249 ------~~D~~v~i~~~--~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~-D~~I~iwd~~t~--~~~~~~ 317 (420)
T 4gga_A 249 ------GNDNLVNVWPS--APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS-DRHIRIWNVCSG--ACLSAV 317 (420)
T ss_dssp ------ETTSCEEEEES--SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT-TCEEEEEETTTT--EEEEEE
T ss_pred ------eccccceEEee--ccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC-CCEEEEEeCCcc--ccceee
Confidence 33557788885 2221 12333455666788999999887776543211 134666677665 222222
Q ss_pred cCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCccccccee
Q 002194 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (954)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 579 (954)
.... .+.. +.|+|+++.++..... ....|++||+.+++.......... .+
T Consensus 318 ~~~~-~v~~------~~~~~~~~~lv~~sg~-------------------~d~~I~iwd~~~~~~v~~l~gH~~----~V 367 (420)
T 4gga_A 318 DAHS-QVCS------ILWSPHYKELISGHGF-------------------AQNQLVIWKYPTMAKVAELKGHTS----RV 367 (420)
T ss_dssp ECSS-CEEE------EEEETTTTEEEEEECT-------------------TTCCEEEEETTTCCEEEEECCCSS----CE
T ss_pred cccc-ceee------eeecCCCCeEEEEEec-------------------CCCEEEEEECCCCcEEEEEcCCCC----CE
Confidence 2221 1222 6789999988876511 123499999998876544332211 12
Q ss_pred EEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002194 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (954)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g 619 (954)
.. .+|||||+.|+.... -..+.+|++.+.
T Consensus 368 ~~-------l~~spdg~~l~S~s~----D~tvriWdv~~~ 396 (420)
T 4gga_A 368 LS-------LTMSPDGATVASAAA----DETLRLWRCFEL 396 (420)
T ss_dssp EE-------EEECTTSSCEEEEET----TTEEEEECCSCS
T ss_pred EE-------EEEcCCCCEEEEEec----CCeEEEEECCCC
Confidence 22 469999987664322 245888887543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.27 E-value=9.8e-10 Score=121.58 Aligned_cols=135 Identities=9% Similarity=-0.040 Sum_probs=78.4
Q ss_pred cccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCce
Q 002194 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (954)
Q Consensus 335 ~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~ 414 (954)
..+.+++|+..++|.+.. +.++++|+.+...+.+...+..............+...+.++|||++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~-------------~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly 282 (373)
T 2mad_H 216 TQPAQANKSGRIVWPVYS-------------GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY 282 (373)
T ss_pred ecceeEecCCEEEEEcCC-------------ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence 346788888888887732 2788889876543333222111000000000112333478899999877
Q ss_pred EEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
........+ ......+.|+++|+ .+.+. +.+ .......+++|||||++++|..+... ..|+++|+.++
T Consensus 283 V~~~~~~~~---~~~~~~~~V~VID~---~t~~vv~~i-~~g~~p~~i~~s~Dg~~~l~v~~~~~--~~V~ViD~~t~ 351 (373)
T 2mad_H 283 LLTSEQSAW---KLHAAAKEVTSVTG---LVGQTSSQI-SLGHDVDAISVAQDGGPDLYALSAGT--EVLHIYDAGAG 351 (373)
T ss_pred EEeccCCcc---cccCCCCeEEEEEC---CCCEEEEEE-ECCCCcCeEEECCCCCeEEEEEcCCC--CeEEEEECCCC
Confidence 663321100 00012458999996 44444 444 33445788999999997777776433 57999999885
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.7e-10 Score=123.33 Aligned_cols=207 Identities=12% Similarity=0.086 Sum_probs=118.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce--eec--ccCCCccccccccceeEec--CCeEEEEEe
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPL--FQSPDIYLNAIFDNFVWVN--NSTLLVCTI 262 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~l--t~~~~~~~~~~~~~~~wsp--DG~~l~~~~ 262 (954)
..+....|+|||+.|+... . ...|.+++++++.. +.+ ...... .+..++|+| |++.|+...
T Consensus 12 ~~v~~~~~~~~~~~l~~~~-------~--dg~i~iw~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~d~~~l~s~~ 78 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCS-------S--DQHIKVFKLDKDTSNWELSDSWRAHDS----SIVAIDWASPEYGRIIASAS 78 (351)
T ss_dssp SCEEEEEECSSSSEEEEEE-------T--TSEEEEEEECSSSCCEEEEEEEECCSS----CEEEEEECCGGGCSEEEEEE
T ss_pred cceeEEEEcCCCCEEEEee-------C--CCeEEEEECCCCCCcceecceeccCCC----cEEEEEEcCCCCCCEEEEEc
Confidence 4688999999999988865 2 34566666655421 111 111222 277899999 688888761
Q ss_pred cCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc----------eeEcCCC
Q 002194 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----------VKEIGPP 331 (954)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~----------~~~l~~~ 331 (954)
....|.++++ ++. ...+...
T Consensus 79 -------------------------------------------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 109 (351)
T 3f3f_A 79 -------------------------------------------------YDKTVKLWEEDPDQEECSGRRWNKLCTLNDS 109 (351)
T ss_dssp -------------------------------------------------TTSCEEEEEECTTSCTTSSCSEEEEEEECCC
T ss_pred -------------------------------------------------CCCeEEEEecCCCcccccccCcceeeeeccc
Confidence 1123556666 432 3333333
Q ss_pred -ccccccccCCC--CcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeec
Q 002194 332 -AVYTSLDPSPD--EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (954)
Q Consensus 332 -~~~~~~~~SpD--Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~ws 407 (954)
..+..++|+|| |+.|+..+.+ +.+.+||+..++. ..+...................+..+.|+
T Consensus 110 ~~~v~~~~~~~~~~~~~l~~~~~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (351)
T 3f3f_A 110 KGSLYSVKFAPAHLGLKLACLGND-------------GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWC 176 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETT-------------CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEEC
T ss_pred CCceeEEEEcCCCCCcEEEEecCC-------------CcEEEecCCChHHhccccccccccccccccCCcccceeEEEec
Confidence 67889999999 9999988743 3899999875431 11110000000011111223455679999
Q ss_pred cC---CCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceE---EeecccccCceeeccCC----ceEEEEEecc
Q 002194 408 SD---KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI---LHKLDLRYGGISWCDDS----LALVYESWYK 477 (954)
Q Consensus 408 pD---g~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~---l~~~~~~~~~~~~spDg----~~l~~~~~~~ 477 (954)
|+ ++.++.. ...+.+..+.. ..+.... +..+...+..++|+|+| +.|+..+.++
T Consensus 177 p~~~~~~~l~~~-------------~~~~~~~~~~~---~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 177 PSRFSPEKLAVS-------------ALEQAIIYQRG---KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp CCSSSCCEEEEE-------------ETTEEEEEEEC---TTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred cCCCCCcEEEEe-------------cCCCcEEEEcc---CCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence 98 6654444 22334444442 3344322 23455667889999998 5566655443
Q ss_pred ccceEEEEEcC
Q 002194 478 TRRTRTWVISP 488 (954)
Q Consensus 478 ~~~~~l~~~d~ 488 (954)
..++|.+..
T Consensus 241 --~i~iwd~~~ 249 (351)
T 3f3f_A 241 --RIRIFKITE 249 (351)
T ss_dssp --CEEEEEEEE
T ss_pred --eEEEEeCCC
Confidence 266776654
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.6e-11 Score=124.70 Aligned_cols=214 Identities=13% Similarity=0.048 Sum_probs=127.9
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+++.... +.+ . ..|.||++||.+.... .| . .....| +.+|.|++ .|.+|+
T Consensus 11 ~~g~~l~y~~~-~~G----~--~~p~vvllHG~~~~~~-----------~w---~-~~~~~L-~~~~rvia---~DlrGh 64 (276)
T 2wj6_A 11 VFDNKLSYIDN-QRD----T--DGPAILLLPGWCHDHR-----------VY---K-YLIQEL-DADFRVIV---PNWRGH 64 (276)
T ss_dssp ETTEEEEEEEC-CCC----C--SSCEEEEECCTTCCGG-----------GG---H-HHHHHH-TTTSCEEE---ECCTTC
T ss_pred eCCeEEEEEEe-cCC----C--CCCeEEEECCCCCcHH-----------HH---H-HHHHHH-hcCCEEEE---eCCCCC
Confidence 47887765543 212 1 1378999999642111 11 1 233334 46799999 677788
Q ss_pred CCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCcccEEEEeccCCCCCCCC---
Q 002194 727 GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTLTP--- 800 (954)
Q Consensus 727 G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~~~~~~--- 800 (954)
|.+..+. .......+|+.+.++.| +-+++.++||||||.+++.++.++ |++++++|++++........
T Consensus 65 G~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~~~~~~~~~~~~ 138 (276)
T 2wj6_A 65 GLSPSEVPDFGYQEQVKDALEILDQL------GVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAK 138 (276)
T ss_dssp SSSCCCCCCCCHHHHHHHHHHHHHHH------TCCSEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESCCCSSCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEECHHHHHHHHHHHHhCHHhhceEEEecccccCCCchHHH
Confidence 8886432 23566778888877776 235899999999999999999999 99999999987542110000
Q ss_pred --------CCCcc------------c-cch---------------hhhcH-----HHHHh-cCcccccCCCCCCEEEEEe
Q 002194 801 --------FGFQN------------E-DRT---------------LWEAT-----STYVE-MSPFMSANKLKKPILLVHG 838 (954)
Q Consensus 801 --------~~~~~------------~-~~~---------------~~~~~-----~~~~~-~sp~~~~~~~~~P~Lii~G 838 (954)
..+.. . ... .|... ..+.. .++...+.++++|+|+++|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lv~~~ 218 (276)
T 2wj6_A 139 SLTLLKDPERWREGTHGLFDVWLDGHDEKRVRHHLLEEMADYGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHI 218 (276)
T ss_dssp HHHHHHCTTTHHHHHHHHHHHHHTTBCCHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHTCSSCCCEEEE
T ss_pred HhhhccCcchHHHHHHHHHHHhhcccchHHHHHHHHHHhhhcchhhhhhccchhHHHHhhccchhhHHhhcCCCceEEEE
Confidence 00000 0 000 00000 00000 0122345678899999987
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
..|...+.......++.+. -...+++++|++||... .+..+.+.+.|.+||.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~----~p~a~~~~i~~~gH~~~-~e~P~~~~~~i~~Fl~~~ 272 (276)
T 2wj6_A 219 FSQPTEPEYEKINSDFAEQ----HPWFSYAKLGGPTHFPA-IDVPDRAAVHIREFATAI 272 (276)
T ss_dssp ECCSCSHHHHHHHHHHHHH----CTTEEEEECCCSSSCHH-HHSHHHHHHHHHHHHHHH
T ss_pred ecCccchhHHHHHHHHHhh----CCCeEEEEeCCCCCccc-ccCHHHHHHHHHHHHhhc
Confidence 5443322001222333322 23479999999999863 567788899999999764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=8.1e-10 Score=122.06 Aligned_cols=131 Identities=14% Similarity=0.020 Sum_probs=71.6
Q ss_pred ccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 336 ~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
...++|||+.+++.+.. +.++++|+.+...+.+...+..............+.+.++|+|||++++.
T Consensus 204 ~~~~~~~g~~~~~~~~~-------------~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv 270 (361)
T 2oiz_A 204 FIAPALDKDKAHFVSYY-------------GNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYV 270 (361)
T ss_dssp CSCCEECSSEEEEEBTT-------------SEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEE
T ss_pred EEEecccCCEEEEEeCC-------------CeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEE
Confidence 44568899888887632 37889998754433221111000000000001134455899999987665
Q ss_pred EEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
... .++... ...+....|+++|+ .+++. ..+..+. ...++|||||++|+.+ +. ..|.++|+.++
T Consensus 271 ~~~-~~~~~~-~~~~~~~~v~viD~---~t~~~v~~i~~~~--p~~ia~spdg~~l~v~-n~----~~v~v~D~~t~ 335 (361)
T 2oiz_A 271 FMH-PDGKEG-THKFPAAEIWVMDT---KTKQRVARIPGRD--ALSMTIDQQRNLMLTL-DG----GNVNVYDISQP 335 (361)
T ss_dssp EEE-SSCCTT-CTTCCCSEEEEEET---TTTEEEEEEECTT--CCEEEEETTTTEEEEE-CS----SCEEEEECSSS
T ss_pred EEc-cCCCcc-cccCCCceEEEEEC---CCCcEEEEEecCC--eeEEEECCCCCEEEEe-CC----CeEEEEECCCC
Confidence 422 111100 00122458999996 44433 3333333 8889999999966644 43 34777788874
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.24 E-value=8.9e-09 Score=113.84 Aligned_cols=283 Identities=10% Similarity=0.003 Sum_probs=146.6
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccC-CCCceEEEEEECCCCceeecccCC-Ccc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDS-SSSKLRVWVADVDTGKARPLFQSP-DIY 241 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~-~~~~~~l~~~d~~~g~~~~lt~~~-~~~ 241 (954)
.|.++|..+ ++ .+..++.+... ++.+||||++|+++....+... +.....|.++|+.+.+...-...+ ...
T Consensus 48 ~v~v~D~~t----~~--~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~ 120 (373)
T 2mad_H 48 QQWVLDAGS----GS--ILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR 120 (373)
T ss_pred EEEEEECCC----Ce--EEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc
Confidence 567877743 22 22234444434 8999999999998763211101 112456889999876654332222 000
Q ss_pred c--cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEE
Q 002194 242 L--NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (954)
Q Consensus 242 ~--~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~ 319 (954)
. ......+.|||||++|+++... ....|+++
T Consensus 121 ~~~g~~p~~~~~spDG~~l~v~n~~-----------------------------------------------~~~~v~vi 153 (373)
T 2mad_H 121 FDVGPYSWMNANTPNNADLLFFQFA-----------------------------------------------AGPAVGLV 153 (373)
T ss_pred cccCCCccceEECCCCCEEEEEecC-----------------------------------------------CCCeEEEE
Confidence 0 0013478999999999987100 01346666
Q ss_pred EeCCce-eE-cCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCC-cccCCccccc
Q 002194 320 SLDGTV-KE-IGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL-AEDIPIAFNS 396 (954)
Q Consensus 320 ~~~G~~-~~-l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~-~~~~p~~~~~ 396 (954)
|.+++. .. +..++. +.+.|+|+..++.... ++.+.+++..++....+...+. ....|.
T Consensus 154 D~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~------------dg~~~~vd~~g~~~~~~~~~~~~~~~~p~---- 214 (373)
T 2mad_H 154 VQGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCA------------QGGLAKTDHAGGAAGAGLVGAMLTAAQNL---- 214 (373)
T ss_pred ECCCCEEeEEcCCCce---EEEEeCCCceEEEEcC------------CCCEEEEECCCcEEEEEeccccccCCcce----
Confidence 622332 22 222221 3455666554443211 1245556662222211111000 000110
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec----------ccccC---ceee
Q 002194 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL----------DLRYG---GISW 463 (954)
Q Consensus 397 ~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~----------~~~~~---~~~~ 463 (954)
...+.+++|+..++|. ...+.++++++ .++..+.+... .+... .+++
T Consensus 215 ----~~~~~~~~~~~~~~~~-------------~~~~~v~vid~---~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~ 274 (373)
T 2mad_H 215 ----LTQPAQANKSGRIVWP-------------VYSGKILQADI---SAAGATNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred ----eecceeEecCCEEEEE-------------cCCceEEEEec---cCCcceEeeeeeecCCcccccceecCceEeEEE
Confidence 1235678888776665 22347888885 33333222211 11122 2678
Q ss_pred ccCCceEEEEEeccc------cceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcE
Q 002194 464 CDDSLALVYESWYKT------RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTY 537 (954)
Q Consensus 464 spDg~~l~~~~~~~~------~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 537 (954)
+|||++|+....... ....|+++|+++.. ....+.-.. ...+ +.|||||++++|....
T Consensus 275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~-vv~~i~~g~--~p~~------i~~s~Dg~~~l~v~~~------- 338 (373)
T 2mad_H 275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ-TSSQISLGH--DVDA------ISVAQDGGPDLYALSA------- 338 (373)
T ss_pred CCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE-EEEEEECCC--CcCe------EEECCCCCeEEEEEcC-------
Confidence 999998877653211 12579999998852 112221111 1122 8899999977776521
Q ss_pred EEEecCCCCCCCCCCeEEEEECCCCCeEEE
Q 002194 538 ILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (954)
Q Consensus 538 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 567 (954)
....|.++|+++++....
T Consensus 339 ------------~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 339 ------------GTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred ------------CCCeEEEEECCCCCEEee
Confidence 123599999999887655
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-10 Score=122.65 Aligned_cols=242 Identities=13% Similarity=0.099 Sum_probs=133.9
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCcee---ecccCCCccccccccceeEec--CCeEEEEEec
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR---PLFQSPDIYLNAIFDNFVWVN--NSTLLVCTIP 263 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~---~lt~~~~~~~~~~~~~~~wsp--DG~~l~~~~~ 263 (954)
..+..++|+|||++|+..+ . ...|.++|+.+++.. .+..+.. .+..++|+| +|++|+...
T Consensus 14 ~~V~~v~~s~~g~~lasgs-------~--D~~v~lwd~~~~~~~~~~~l~gH~~-----~V~~v~~~~~~~~~~l~s~s- 78 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCS-------S--DRSVKIFDVRNGGQILIADLRGHEG-----PVWQVAWAHPMYGNILASCS- 78 (316)
T ss_dssp CCEEEEEECGGGCEEEEEE-------T--TTEEEEEEEETTEEEEEEEEECCSS-----CEEEEEECCGGGSSCEEEEE-
T ss_pred CeEEEeeEcCCCCEEEEEe-------C--CCeEEEEEecCCCcEEEEEEcCCCc-----cEEEEEeCCCCCCCEEEEEE-
Confidence 3688899999999998865 2 345566666665432 2222222 277899986 488887651
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc---eeEcCCC-ccccccc
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLD 338 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~---~~~l~~~-~~~~~~~ 338 (954)
. ...|.++++ +|. ...+... ..+..++
T Consensus 79 --------------------~----------------------------D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~ 110 (316)
T 3bg1_A 79 --------------------Y----------------------------DRKVIIWREENGTWEKSHEHAGHDSSVNSVC 110 (316)
T ss_dssp --------------------T----------------------------TSCEEEECCSSSCCCEEEEECCCSSCCCEEE
T ss_pred --------------------C----------------------------CCEEEEEECCCCcceEEEEccCCCCceEEEE
Confidence 1 123556666 553 2233333 6788999
Q ss_pred cCCC--CcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 339 PSPD--EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 339 ~SpD--Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
|+|| |+.|+..+.+ +.+.+|++.++. ........ +....+..++|+|++..--+
T Consensus 111 ~~p~~~g~~lasgs~D-------------~~i~lwd~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 111 WAPHDYGLILACGSSD-------------GAISLLTYTGEGQWEVKKINN----------AHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp ECCTTTCSCEEEECSS-------------SCEEEEEECSSSCEEECCBTT----------SSSSCBCCCEECCCCCC---
T ss_pred ECCCCCCcEEEEEcCC-------------CCEEEEecCCCCCcceeeeec----------cccCCcceEEEccccCCccc
Confidence 9998 7788877643 389999988542 22111111 12234567889998421000
Q ss_pred EEEeccC-----CCccccccCCCeEEEEecCCCCCCCc---eEEeecccccCceeeccCC----ceEEEEEeccccceEE
Q 002194 416 WAETQDG-----GDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDS----LALVYESWYKTRRTRT 483 (954)
Q Consensus 416 ~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~g~~~---~~l~~~~~~~~~~~~spDg----~~l~~~~~~~~~~~~l 483 (954)
. ....+ +..-+..+..+.|.+|++ ..++.. ..+..+...+..++|+|++ +.|+..+.++. .+|
T Consensus 168 ~-~~~~~~~~~~~~~l~sgs~D~~v~lWd~--~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~--v~i 242 (316)
T 3bg1_A 168 I-DHPSGQKPNYIKRFASGGCDNLIKLWKE--EEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR--VFI 242 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEE--CTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE--EEE
T ss_pred c-ccccccCccccceEEEecCCCeEEEEEe--CCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe--EEE
Confidence 0 00000 000011133456777875 122222 2234455667889999997 56666654432 566
Q ss_pred EEEcCCC-CCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 484 WVISPGS-KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 484 ~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
|.++... +......+. .....+.. ++|+|||++|+...
T Consensus 243 w~~~~~~~~~~~~~~~~-~~~~~v~~------v~~sp~g~~las~~ 281 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLLH-KFNDVVWH------VSWSITANILAVSG 281 (316)
T ss_dssp EECSSTTCCCCBCCEEE-ECSSCEEE------EEECTTTCCEEEEE
T ss_pred EEccCccccchhhhhhh-cCCCcEEE------EEEcCCCCEEEEEc
Confidence 6554311 111112222 22233333 88999999998776
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-10 Score=127.89 Aligned_cols=117 Identities=13% Similarity=0.024 Sum_probs=80.0
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHC---------CcEEEE
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR---------GFAILG 717 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~---------G~~V~~ 717 (954)
.+|..|+...+.+.+ +..|.||++||.+.... .| ...+..|++. ||.|++
T Consensus 75 i~g~~i~~~~~~~~~------~~~~plll~HG~~~s~~-----------~~----~~~~~~L~~~~~~~~~~~~~~~vi~ 133 (388)
T 4i19_A 75 IDGATIHFLHVRSPE------PDATPMVITHGWPGTPV-----------EF----LDIIGPLTDPRAHGGDPADAFHLVI 133 (388)
T ss_dssp ETTEEEEEEEECCSS------TTCEEEEEECCTTCCGG-----------GG----HHHHHHHHCGGGGTSCGGGCEEEEE
T ss_pred ECCeEEEEEEccCCC------CCCCeEEEECCCCCCHH-----------HH----HHHHHHHhCcccccCCCCCCeEEEE
Confidence 489999987776542 12577999999752211 11 1234455554 999999
Q ss_pred cCCCCCCCCCCcccchh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 718 GPTTPIIGEGDEEANDR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~~~---~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
.+..|+|.+..... ......+|+.+.++.+ +.+++.++||||||.+++.++.++|++++++|++++.
T Consensus 134 ---~dl~G~G~S~~~~~~~~~~~~~a~~~~~l~~~l------g~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 203 (388)
T 4i19_A 134 ---PSLPGFGLSGPLKSAGWELGRIAMAWSKLMASL------GYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQ 203 (388)
T ss_dssp ---ECCTTSGGGCCCSSCCCCHHHHHHHHHHHHHHT------TCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCC
T ss_pred ---EcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHc------CCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCC
Confidence 66678887755432 2334444444443332 3358999999999999999999999999999999864
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.22 E-value=6.7e-10 Score=121.20 Aligned_cols=239 Identities=15% Similarity=0.171 Sum_probs=135.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCC---CC-ceeeeecC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGK---LG-QEIEIQGF 185 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~---~~-~~~~lt~~ 185 (954)
.+..++|||||+.||..+.+ ..|.+|++..... .. ....+.+
T Consensus 60 ~v~~v~~sp~~~~las~s~D---------------------------------~~v~iw~~~~~~~~~~~~~~~~~~~~- 105 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAGSFD---------------------------------STVSIWAKEESADRTFEMDLLAIIEG- 105 (330)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SCEEEEEC-------CCCEEEEEEC--
T ss_pred CEEEEEECCCCCEEEEEeCC---------------------------------CcEEEEEcccCcCccccceeEEEEcC-
Confidence 46689999999999988876 5788998842110 00 1122322
Q ss_pred CCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECC-CCc---eeecccCCCccccccccceeEecCCeEEEEE
Q 002194 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-TGK---ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 186 ~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~-~g~---~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
+...+..++|||||++|+.... ...|.++|++ ++. .......... .+..+.|+|||+.|+..
T Consensus 106 -h~~~V~~v~~sp~g~~las~s~---------D~~v~iwd~~~~~~~~~~~~~~~~h~~----~v~~v~~~p~~~~l~s~ 171 (330)
T 2hes_X 106 -HENEVKGVAWSNDGYYLATCSR---------DKSVWIWETDESGEEYECISVLQEHSQ----DVKHVIWHPSEALLASS 171 (330)
T ss_dssp ----CEEEEEECTTSCEEEEEET---------TSCEEEEECCTTCCCCEEEEEECCCSS----CEEEEEECSSSSEEEEE
T ss_pred -CCCcEEEEEECCCCCEEEEEeC---------CCEEEEEeccCCCCCeEEEEEeccCCC----ceEEEEECCCCCEEEEE
Confidence 2236888999999999988652 3456666763 222 1111122222 26789999999988876
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC--c-eeEcCCC-ccccc
Q 002194 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--T-VKEIGPP-AVYTS 336 (954)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G--~-~~~l~~~-~~~~~ 336 (954)
. .+ ..|.+++. ++ + ...+... ..+..
T Consensus 172 s---------------------~D----------------------------~~i~iW~~~~~~~~~~~~~~~h~~~v~~ 202 (330)
T 2hes_X 172 S---------------------YD----------------------------DTVRIWKDYDDDWECVAVLNGHEGTVWS 202 (330)
T ss_dssp E---------------------TT----------------------------SCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred c---------------------CC----------------------------CeEEEEECCCCCeeEEEEccCCCCcEEE
Confidence 1 11 22444455 44 2 2334444 67788
Q ss_pred cccCCC--CcEEEEEeecCCcccccccCCCCcceEEEeccCce------EEEeccCCCcccCCccccccccCccceeecc
Q 002194 337 LDPSPD--EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF------VRELCDLPLAEDIPIAFNSVRKGMRSINWRS 408 (954)
Q Consensus 337 ~~~SpD--Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~------~~~l~~~~~~~~~p~~~~~~~~g~~~~~wsp 408 (954)
++|+|| +..|+..+.+ +.+.+|++.++. ...+...+. .....+..++|++
T Consensus 203 ~~~~~~~~~~~l~s~s~D-------------~~v~iw~~~~~~~~~~~~~~~~~~~~~---------~h~~~v~~v~~s~ 260 (330)
T 2hes_X 203 SDFDKTEGVFRLCSGSDD-------------STVRVWKYMGDDEDDQQEWVCEAILPD---------VHKRQVYNVAWGF 260 (330)
T ss_dssp EEECCSSSSCEEEEEETT-------------SCEEEEEEEEECTTSCEEEEEEEECCS---------CCSSCEEEEEECT
T ss_pred EEecCCCCeeEEEEEeCC-------------CeEEEEEecCCCccccceeEEeeeccc---------ccccceEEEEEcC
Confidence 999999 6677766633 389999987431 011111110 0123456789997
Q ss_pred CCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE----eeccc-ccCceeecc--CCceEEEEEeccccce
Q 002194 409 DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL----HKLDL-RYGGISWCD--DSLALVYESWYKTRRT 481 (954)
Q Consensus 409 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l----~~~~~-~~~~~~~sp--Dg~~l~~~~~~~~~~~ 481 (954)
++ .|+.. +..+.|.+|+. .+++.+.+ ..+.. .+..++|+| |++.|+..+.++. .
T Consensus 261 ~~-~l~s~-------------~~dg~v~iw~~---~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~--v 321 (330)
T 2hes_X 261 NG-LIASV-------------GADGVLAVYEE---VDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI--V 321 (330)
T ss_dssp TS-CEEEE-------------ETTSCEEEEEE---ETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE--E
T ss_pred CC-EEEEE-------------eCCCEEEEEEc---CCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCc--E
Confidence 66 33333 33457788885 33322222 12232 567789999 7888887765543 5
Q ss_pred EEEEE
Q 002194 482 RTWVI 486 (954)
Q Consensus 482 ~l~~~ 486 (954)
+||.+
T Consensus 322 ~~W~~ 326 (330)
T 2hes_X 322 NFWSL 326 (330)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 56654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.6e-10 Score=128.64 Aligned_cols=246 Identities=10% Similarity=0.071 Sum_probs=141.0
Q ss_pred CCCCceecC-CCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCC--CCCCceeeeecCC
Q 002194 110 PLPALSFSP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPD--GKLGQEIEIQGFP 186 (954)
Q Consensus 110 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~--g~~~~~~~lt~~~ 186 (954)
.+..++||| ||++||..+.+ +.|.+|++... +.... ..++ +.
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~d---------------------------------g~v~vwd~~~~~~~~~~~-~~~~-~~ 109 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQ---------------------------------GVIKIWNLKEIIVGEVYS-SSLT-YD 109 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETT---------------------------------SEEEEEEHHHHHTTCCCS-CSEE-EE
T ss_pred ceEEEEECCCCCCEEEEecCC---------------------------------ceEEEeECcccccCcccc-eeee-cc
Confidence 577899999 99999998876 57999998531 11011 1121 11
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEEC-CCCceeecccCCCcc--------cccccccee--EecCC
Q 002194 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV-DTGKARPLFQSPDIY--------LNAIFDNFV--WVNNS 255 (954)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~-~~g~~~~lt~~~~~~--------~~~~~~~~~--wspDG 255 (954)
....+....|+||++.|+... .++...||-++. ..++..+........ ....+..+. |++|+
T Consensus 110 h~~~v~~~~~~~~~~~l~s~s-------~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (437)
T 3gre_A 110 CSSTVTQITMIPNFDAFAVSS-------KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK 182 (437)
T ss_dssp CSSCEEEEEECTTSSEEEEEE-------TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC
T ss_pred CCCCEEEEEEeCCCCEEEEEe-------CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC
Confidence 334789999999999988765 334444444431 133332221100000 000022222 66788
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCC--C
Q 002194 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGP--P 331 (954)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~--~ 331 (954)
+.|+... ....|.++|+ +++ ...+.. .
T Consensus 183 ~~l~~~~-------------------------------------------------~d~~i~iwd~~~~~~~~~~~~~~h 213 (437)
T 3gre_A 183 SLLVALT-------------------------------------------------NLSRVIIFDIRTLERLQIIENSPR 213 (437)
T ss_dssp EEEEEEE-------------------------------------------------TTSEEEEEETTTCCEEEEEECCGG
T ss_pred CEEEEEe-------------------------------------------------CCCeEEEEeCCCCeeeEEEccCCC
Confidence 8777651 2245778888 664 344443 2
Q ss_pred -ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccce----e
Q 002194 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSI----N 405 (954)
Q Consensus 332 -~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~----~ 405 (954)
..+..++|+|||++|+..+.+ +.|.+||+..++. ..+.. ... ..+..+ .
T Consensus 214 ~~~v~~~~~s~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~-~~~-----------~~v~~~~~~~~ 268 (437)
T 3gre_A 214 HGAVSSICIDEECCVLILGTTR-------------GIIDIWDIRFNVLIRSWSF-GDH-----------APITHVEVCQF 268 (437)
T ss_dssp GCCEEEEEECTTSCEEEEEETT-------------SCEEEEETTTTEEEEEEBC-TTC-----------EEEEEEEECTT
T ss_pred CCceEEEEECCCCCEEEEEcCC-------------CeEEEEEcCCccEEEEEec-CCC-----------CceEEEEeccc
Confidence 678899999999999988744 3899999986554 33321 111 223455 5
Q ss_pred eccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec--------------------------ccccC
Q 002194 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--------------------------DLRYG 459 (954)
Q Consensus 406 wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--------------------------~~~~~ 459 (954)
|+|||+.++.. +..+.|.+|++ .++.....+... ...+.
T Consensus 269 ~s~~~~~l~s~-------------~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 333 (437)
T 3gre_A 269 YGKNSVIVVGG-------------SSKTFLTIWNF--VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALS 333 (437)
T ss_dssp TCTTEEEEEEE-------------STTEEEEEEET--TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGC
T ss_pred cCCCccEEEEE-------------cCCCcEEEEEc--CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceE
Confidence 66677655444 34557889986 223223333322 22355
Q ss_pred ceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 460 GISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 460 ~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
.++|+ +++.|+..+.++ .|.++++.++
T Consensus 334 ~l~~~-~~~~l~s~~~d~----~i~~wd~~~~ 360 (437)
T 3gre_A 334 TISVS-NDKILLTDEATS----SIVMFSLNEL 360 (437)
T ss_dssp CEEEE-TTEEEEEEGGGT----EEEEEETTCG
T ss_pred EEEEC-CceEEEecCCCC----eEEEEECCCc
Confidence 66777 666666554332 4666666664
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.3e-09 Score=121.10 Aligned_cols=312 Identities=13% Similarity=0.041 Sum_probs=170.3
Q ss_pred CCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcc
Q 002194 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (954)
Q Consensus 112 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~ 191 (954)
..+.|||||++|.....+ ..|.++|+.. .+.....++ +.+...
T Consensus 200 ~~v~~SpDGr~lyv~~~d---------------------------------g~V~viD~~~-~t~~~v~~i---~~G~~P 242 (567)
T 1qks_A 200 HISRLSASGRYLFVIGRD---------------------------------GKVNMIDLWM-KEPTTVAEI---KIGSEA 242 (567)
T ss_dssp EEEEECTTSCEEEEEETT---------------------------------SEEEEEETTS-SSCCEEEEE---ECCSEE
T ss_pred cceEECCCCCEEEEEcCC---------------------------------CeEEEEECCC-CCCcEeEEE---ecCCCC
Confidence 367889999887665443 3688888731 111222233 234456
Q ss_pred cceeec----CCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcccc-------ccccceeEecCCeEEEE
Q 002194 192 NFVTWS----QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN-------AIFDNFVWVNNSTLLVC 260 (954)
Q Consensus 192 ~~~~wS----PDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~-------~~~~~~~wspDG~~l~~ 260 (954)
....+| |||++++.+... ...|.++|..+.+..+.......... ..+..+..|+++..+++
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~--------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv 314 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYW--------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 314 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEE--------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred ceeEEccccCCCCCEEEEEEcc--------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEE
Confidence 788999 799998886642 46788889888777654332211000 01234555666655554
Q ss_pred EecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc---eeEcCCCccccc
Q 002194 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPPAVYTS 336 (954)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~---~~~l~~~~~~~~ 336 (954)
.. ....+|+++|. +.+ .+.+.......+
T Consensus 315 ~~------------------------------------------------~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d 346 (567)
T 1qks_A 315 NV------------------------------------------------KETGKILLVDYTDLNNLKTTEISAERFLHD 346 (567)
T ss_dssp EE------------------------------------------------TTTTEEEEEETTCSSEEEEEEEECCSSEEE
T ss_pred Ee------------------------------------------------cCCCeEEEEecCCCccceeeeeeccccccC
Confidence 41 03456888887 432 222322233456
Q ss_pred cccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCcccee-eccCCCCceE
Q 002194 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN-WRSDKPSTLY 415 (954)
Q Consensus 337 ~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~-wspDg~~i~~ 415 (954)
..|+|||++++...... ++|.++|+++++........ ...|. .+ +.+. +.||+..+++
T Consensus 347 ~~~~pdgr~~~va~~~s------------n~V~ViD~~t~kl~~~i~vg--g~~Ph------pg-~g~~~~~p~~g~v~~ 405 (567)
T 1qks_A 347 GGLDGSHRYFITAANAR------------NKLVVIDTKEGKLVAIEDTG--GQTPH------PG-RGANFVHPTFGPVWA 405 (567)
T ss_dssp EEECTTSCEEEEEEGGG------------TEEEEEETTTTEEEEEEECS--SSSBC------CT-TCEEEEETTTEEEEE
T ss_pred ceECCCCCEEEEEeCCC------------CeEEEEECCCCcEEEEEecc--CcCCC------Cc-cceeeECCCCCcEEE
Confidence 78999999998887443 28999999977654332210 01111 11 2333 4788765543
Q ss_pred EEEeccCCCccccccCCCeEEEEecCCCCC----CC-ceEEeecccccCceeeccCCceEEEEEeccc---cceEEEEEc
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQG----EG-PEILHKLDLRYGGISWCDDSLALVYESWYKT---RRTRTWVIS 487 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g----~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~---~~~~l~~~d 487 (954)
. .. -+.+.|.+++.++... -+ .+.+.........+..+|||++|+.....+. ....|.++|
T Consensus 406 t-~~----------~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 406 T-SH----------MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp E-EB----------SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred e-CC----------CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 3 11 1235788888632111 11 1222222122234678999999887642111 023577777
Q ss_pred CCCC-----CCCcEEEecC-------CCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEE
Q 002194 488 PGSK-----DVAPRILFDR-------SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLD 555 (954)
Q Consensus 488 ~~~~-----~~~~~~l~~~-------~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 555 (954)
.++. ......+.-. ....+. .+.|+|||+++++..... . .....|.
T Consensus 475 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~G~~~~~s~~~~-------------~---~~~~~i~ 532 (567)
T 1qks_A 475 IKAMTGDGSDPEFKTLPIAEWAGITEGQPRVV------QGEFNKDGTEVWFSVWNG-------------K---DQESALV 532 (567)
T ss_dssp GGGCCCSSSCCCEEEECHHHHHTCCSSCCEEE------EEEECTTSSEEEEEEECC-------------T---TSCCEEE
T ss_pred CCcccccccCCCcEEeccccccccCCCCcceE------eeeECCCCCEEEEEeecC-------------C---CCCCcEE
Confidence 6653 1111233110 011111 167899999998886321 0 0123588
Q ss_pred EEECCCCCeEEEecc
Q 002194 556 LFDINTGSKERIWES 570 (954)
Q Consensus 556 ~~d~~~g~~~~l~~~ 570 (954)
++|.+|++.......
T Consensus 533 v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 533 VVDDKTLELKHVIKD 547 (567)
T ss_dssp EEETTTTEEEEEECC
T ss_pred EEECCCceEEEEeCC
Confidence 999999887655543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-08 Score=117.02 Aligned_cols=325 Identities=9% Similarity=-0.002 Sum_probs=176.4
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECC--CCceeecccCCCc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD--TGKARPLFQSPDI 240 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~--~g~~~~lt~~~~~ 240 (954)
+.|+++|..+ ++. +..++.+.....+.+||||++++...+ ...|.++|+. +++...-......
T Consensus 177 ~~V~viD~~t----~~v--~~~i~~g~~p~~v~~SpDGr~lyv~~~---------dg~V~viD~~~~t~~~v~~i~~G~~ 241 (567)
T 1qks_A 177 GQIALIDGST----YEI--KTVLDTGYAVHISRLSASGRYLFVIGR---------DGKVNMIDLWMKEPTTVAEIKIGSE 241 (567)
T ss_dssp TEEEEEETTT----CCE--EEEEECSSCEEEEEECTTSCEEEEEET---------TSEEEEEETTSSSCCEEEEEECCSE
T ss_pred CeEEEEECCC----CeE--EEEEeCCCCccceEECCCCCEEEEEcC---------CCeEEEEECCCCCCcEeEEEecCCC
Confidence 3788988743 322 222233445668899999998776531 3479999985 5544322222221
Q ss_pred cccccccceeEe----cCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceE
Q 002194 241 YLNAIFDNFVWV----NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQL 316 (954)
Q Consensus 241 ~~~~~~~~~~ws----pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l 316 (954)
...+++| |||++++++.. ...++
T Consensus 242 -----P~~ia~s~~~~pDGk~l~v~n~------------------------------------------------~~~~v 268 (567)
T 1qks_A 242 -----ARSIETSKMEGWEDKYAIAGAY------------------------------------------------WPPQY 268 (567)
T ss_dssp -----EEEEEECCSTTCTTTEEEEEEE------------------------------------------------ETTEE
T ss_pred -----CceeEEccccCCCCCEEEEEEc------------------------------------------------cCCeE
Confidence 3478899 79999997711 12345
Q ss_pred EEEEe-CCceeE-cCCC------------ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEec
Q 002194 317 VLVSL-DGTVKE-IGPP------------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELC 382 (954)
Q Consensus 317 ~~~~~-~G~~~~-l~~~------------~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~ 382 (954)
.++|. +.+... +... ..+..+..|+++..+++.... .+.|+++|........++
T Consensus 269 ~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~------------~g~v~~vd~~~~~~~~v~ 336 (567)
T 1qks_A 269 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE------------TGKILLVDYTDLNNLKTT 336 (567)
T ss_dssp EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT------------TTEEEEEETTCSSEEEEE
T ss_pred EEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC------------CCeEEEEecCCCccceee
Confidence 56666 543322 2111 123456678887766655422 348888887653222222
Q ss_pred cCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-cc-c--c
Q 002194 383 DLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DL-R--Y 458 (954)
Q Consensus 383 ~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~-~--~ 458 (954)
..+.. .....+.|+|||++++... ...+.|.++|+ ..++....... .. . .
T Consensus 337 ~i~~~-----------~~~~d~~~~pdgr~~~va~------------~~sn~V~ViD~---~t~kl~~~i~vgg~~Phpg 390 (567)
T 1qks_A 337 EISAE-----------RFLHDGGLDGSHRYFITAA------------NARNKLVVIDT---KEGKLVAIEDTGGQTPHPG 390 (567)
T ss_dssp EEECC-----------SSEEEEEECTTSCEEEEEE------------GGGTEEEEEET---TTTEEEEEEECSSSSBCCT
T ss_pred eeecc-----------ccccCceECCCCCEEEEEe------------CCCCeEEEEEC---CCCcEEEEEeccCcCCCCc
Confidence 21110 1123578999999665541 22457899996 44443332222 11 1 1
Q ss_pred Cceee-ccCCceEEEEEeccccceEEEEEcCCCCC-----CCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeecc
Q 002194 459 GGISW-CDDSLALVYESWYKTRRTRTWVISPGSKD-----VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKEN 532 (954)
Q Consensus 459 ~~~~~-spDg~~l~~~~~~~~~~~~l~~~d~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~ 532 (954)
.++.| .|++..+++...-.. ..|.+++.+++. .+.......... +...+..+|||++++.....
T Consensus 391 ~g~~~~~p~~g~v~~t~~~g~--~~Vsvid~~~~~~~~~~~kvv~~i~~~g~------g~~~i~~~p~~~~l~v~~~~-- 460 (567)
T 1qks_A 391 RGANFVHPTFGPVWATSHMGD--DSVALIGTDPEGHPDNAWKILDSFPALGG------GSLFIKTHPNSQYLYVDATL-- 460 (567)
T ss_dssp TCEEEEETTTEEEEEEEBSSS--SEEEEEECCTTTCTTTBTSEEEEEECSCS------CCCCEECCTTCSEEEEECTT--
T ss_pred cceeeECCCCCcEEEeCCCCC--CeEEEecCCCCCCccccCEEEEEEecCCC------CCEEEEeCCCCCeEEEecCC--
Confidence 24444 788887766654332 357788877632 112121111111 11226779999988765410
Q ss_pred CCCcEEEEecCCCCCCC-CCCeEEEEECCCC-----Ce--EEEeccCccccc---ceeEEeccCCccccccccCCEEEEE
Q 002194 533 DEGTYILLNGNGATPEG-NIPFLDLFDINTG-----SK--ERIWESDKEKYY---ETTVALMSDQTEGDLYLNQLKILTS 601 (954)
Q Consensus 533 ~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~g-----~~--~~l~~~~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~~~ 601 (954)
.+.. ....|.++|+++. .. +.+.-.++...- ..+. .+.|++||++++++
T Consensus 461 -------------~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~G~~~~~s 520 (567)
T 1qks_A 461 -------------NPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVV-------QGEFNKDGTEVWFS 520 (567)
T ss_dssp -------------CSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEE-------EEEECTTSSEEEEE
T ss_pred -------------CCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceE-------eeeECCCCCEEEEE
Confidence 0100 0235899998765 21 333211000000 0111 25799999999998
Q ss_pred EecC-CCCceEEEEECCCCceeE
Q 002194 602 KESK-TENTQYYIQSWPDKKSCQ 623 (954)
Q Consensus 602 ~~s~-~~p~~l~~~~~~~g~~~~ 623 (954)
.+.. .....|.++|..+++.+.
T Consensus 521 ~~~~~~~~~~i~v~D~~t~~~~~ 543 (567)
T 1qks_A 521 VWNGKDQESALVVVDDKTLELKH 543 (567)
T ss_dssp EECCTTSCCEEEEEETTTTEEEE
T ss_pred eecCCCCCCcEEEEECCCceEEE
Confidence 7754 356789999988876543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-08 Score=113.05 Aligned_cols=92 Identities=15% Similarity=0.056 Sum_probs=53.4
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeecccc-CCCCceEEEEEECCCCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAED-SSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~-~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
..|+++|..+ ++. +..++.+... +++|||||++|+.+....... .+.....|.++|+++++...-.......
T Consensus 31 ~~v~v~D~~t----~~~--~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 31 SRVHVYDYTN----GKF--LGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp CEEEEEETTT----CCE--EEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred CeEEEEECCC----CeE--EEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence 3688988743 322 1123333344 889999999988765321000 0122456889999887664332211100
Q ss_pred c--cccccceeEecCCeEEEEE
Q 002194 242 L--NAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 242 ~--~~~~~~~~wspDG~~l~~~ 261 (954)
. ......++++|||++|+++
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~ 125 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQ 125 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEE
T ss_pred cccCCCcceEEECCCCCEEEEE
Confidence 0 0014578999999999977
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-10 Score=141.23 Aligned_cols=238 Identities=12% Similarity=0.143 Sum_probs=149.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCC-CC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DG 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~-~~ 188 (954)
.+..++|||||++|+....+ +.|.+|++.. +....+..+. +.
T Consensus 11 ~V~~l~~s~dg~~latg~~d---------------------------------g~I~vwd~~~----~~~~~~~~l~~h~ 53 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSD---------------------------------KTIKIFEVEG----ETHKLIDTLTGHE 53 (753)
T ss_dssp CEEEECCCSSSCCEEEEETT---------------------------------TEEEEEEEET----TEEEEEEEECCCS
T ss_pred eeEEEEECCCCCeEEEEECC---------------------------------CcEEEEecCC----CCCccceeccCCc
Confidence 56678999999999988765 4789999853 2222222222 23
Q ss_pred CcccceeecCC--CCeEEEEEeeccccCCCCceEEEEEECCCCceee--cccCCCccccccccceeEecC--CeEEEEEe
Q 002194 189 AKLNFVTWSQD--GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP--LFQSPDIYLNAIFDNFVWVNN--STLLVCTI 262 (954)
Q Consensus 189 ~~~~~~~wSPD--G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~--lt~~~~~~~~~~~~~~~wspD--G~~l~~~~ 262 (954)
..+..+.|+|+ |+.|+... . ...|.++++++++... ....... .+..+.|+|+ |+.|++..
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s-------~--Dg~I~vwd~~~~~~~~~~~~~~h~~----~V~~v~~sp~~~~~~l~sgs 120 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCS-------Y--DGKVLIWKEENGRWSQIAVHAVHSA----SVNSVQWAPHEYGPLLLVAS 120 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEE-------T--TSCEEEEEEETTEEEEEEEECCCSS----CEEEEEECCGGGCSEEEEEE
T ss_pred CceEEEEecCCCCCCEEEEEe-------C--CCeEEEEECCCCcccccccccCCCC----CeEEEEECCCCCCCEEEEEe
Confidence 47889999998 88888865 2 3456666766765222 2221222 2778999999 88888761
Q ss_pred cCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC---ceeEcCCC-cccccc
Q 002194 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG---TVKEIGPP-AVYTSL 337 (954)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G---~~~~l~~~-~~~~~~ 337 (954)
..+.|.++++ ++ ....+... ..+..+
T Consensus 121 -------------------------------------------------~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l 151 (753)
T 3jro_A 121 -------------------------------------------------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151 (753)
T ss_dssp -------------------------------------------------TTSEEEEEECCSSSCCCCEEEECCSSCEEEE
T ss_pred -------------------------------------------------CCCcEEEEEeecCCCcceeEeecCCCceEEE
Confidence 1234667777 44 22223333 677888
Q ss_pred ccCC-------------CCcEEEEEeecCCcccccccCCCCcceEEEeccCce--EEEeccCCCcccCCccccccccCcc
Q 002194 338 DPSP-------------DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMR 402 (954)
Q Consensus 338 ~~Sp-------------DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~--~~~l~~~~~~~~~p~~~~~~~~g~~ 402 (954)
.|+| ||+.|+..+.+ +.|.+||+.++. ...+.... +....+.
T Consensus 152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~d-------------g~I~iwd~~~~~~~~~~~~~~~----------~h~~~V~ 208 (753)
T 3jro_A 152 SWAPATIEEDGEHNGTKESRKFVTGGAD-------------NLVKIWKYNSDAQTYVLESTLE----------GHSDWVR 208 (753)
T ss_dssp EECCCC---------CGGGCCEEEEETT-------------SCEEEEEEETTTTEEEEEEEEC----------CCSSCEE
T ss_pred EecCcccccccccccCCCCCEEEEEECC-------------CeEEEEeccCCcccceeeeeec----------CCCCcEE
Confidence 9999 68888888743 389999998542 11111111 1224457
Q ss_pred ceeeccC---CCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCC---ceEE---eecccccCceeeccCCceEEEE
Q 002194 403 SINWRSD---KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG---PEIL---HKLDLRYGGISWCDDSLALVYE 473 (954)
Q Consensus 403 ~~~wspD---g~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~---~~~l---~~~~~~~~~~~~spDg~~l~~~ 473 (954)
.++|+|| |+.++.. +..+.|.+|++ ..++ ...+ ......+..++|+|||+.|+..
T Consensus 209 ~l~~sp~~~~~~~l~s~-------------s~Dg~I~iwd~---~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 272 (753)
T 3jro_A 209 DVAWSPTVLLRSYLASV-------------SQDRTCIIWTQ---DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (753)
T ss_dssp EEEECCCCSSSEEEEEE-------------ESSSCEEEEEE---SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred EEEeccCCCCCCEEEEE-------------ecCCEEEEecC---CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence 8999999 6655544 33557888886 3221 1111 2345567789999999998887
Q ss_pred EeccccceEEEEEc
Q 002194 474 SWYKTRRTRTWVIS 487 (954)
Q Consensus 474 ~~~~~~~~~l~~~d 487 (954)
+.++. .++|.++
T Consensus 273 s~Dg~--I~vwd~~ 284 (753)
T 3jro_A 273 GGDNK--VTLWKEN 284 (753)
T ss_dssp CSSSC--EECCBCC
T ss_pred cCCCE--EEEEecC
Confidence 65432 4455443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.20 E-value=8.1e-10 Score=125.47 Aligned_cols=243 Identities=11% Similarity=0.220 Sum_probs=144.2
Q ss_pred CCCCCceecCC-CCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCC-------CCCCcee
Q 002194 109 PPLPALSFSPQ-RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPD-------GKLGQEI 180 (954)
Q Consensus 109 ~~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-------g~~~~~~ 180 (954)
..+..++|+|+ ++.||....+ +.|.+|++... +......
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~d---------------------------------g~V~vwd~~~~~~~~~~~~~~~~~~ 175 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPS---------------------------------SDVLVFDYTKHPSKPEPSGECQPDL 175 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSS---------------------------------SCEEEEEGGGSCSSCCTTCCCCCSE
T ss_pred CcEEEEEECCCCCcEEEEECCC---------------------------------CcEEEEECCCcccccCccccCCCcE
Confidence 36788999998 4555555443 47899998641 1112333
Q ss_pred eeecCCCCCcccceeecCCCC-eEEEEEeeccccCCCCceEEEEEECCCCce--------eecccCCCccccccccceeE
Q 002194 181 EIQGFPDGAKLNFVTWSQDGK-HLAFSIRIDAEDSSSSKLRVWVADVDTGKA--------RPLFQSPDIYLNAIFDNFVW 251 (954)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~-~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~--------~~lt~~~~~~~~~~~~~~~w 251 (954)
.+.. +...+....|+|+++ .|+... ....|.++++..+.. ..+.... ..+..++|
T Consensus 176 ~~~~--h~~~v~~l~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~-----~~v~~v~~ 239 (430)
T 2xyi_A 176 RLRG--HQKEGYGLSWNPNLNGYLLSAS---------DDHTICLWDINATPKEHRVIDAKNIFTGHT-----AVVEDVAW 239 (430)
T ss_dssp EEEC--CSSCCCCEEECTTSTTEEEEEC---------TTSCEEEEETTSCCBGGGEEECSEEECCCS-----SCEEEEEE
T ss_pred EecC--CCCCeEEEEeCCCCCCeEEEEe---------CCCeEEEEeCCCCCCCCceeccceeecCCC-----CCEeeeEE
Confidence 3433 334688999999999 555532 245677777765321 1121112 12678999
Q ss_pred ecC-CeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC----ce
Q 002194 252 VNN-STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG----TV 325 (954)
Q Consensus 252 spD-G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G----~~ 325 (954)
+|+ +..|+... ....|.++|+ ++ ..
T Consensus 240 ~p~~~~~l~s~~-------------------------------------------------~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 240 HLLHESLFGSVA-------------------------------------------------DDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp CSSCTTEEEEEE-------------------------------------------------TTSEEEEEETTCSCSSSCS
T ss_pred eCCCCCEEEEEe-------------------------------------------------CCCeEEEEECCCCCCCcce
Confidence 994 55555441 2345777787 44 22
Q ss_pred eEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC-ce-EEEeccCCCcccCCccccccccCcc
Q 002194 326 KEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IF-VRELCDLPLAEDIPIAFNSVRKGMR 402 (954)
Q Consensus 326 ~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~-~~~l~~~~~~~~~p~~~~~~~~g~~ 402 (954)
..+... ..+..++|+|+|++++++... .+.|.+||+.. +. ...+..+ ...+.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~~~l~tg~~------------dg~v~vwd~~~~~~~~~~~~~h-------------~~~v~ 325 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSEFILATGSA------------DKTVALWDLRNLKLKLHSFESH-------------KDEIF 325 (430)
T ss_dssp EEEECCSSCEEEEEECSSCTTEEEEEET------------TSEEEEEETTCTTSCSEEEECC-------------SSCEE
T ss_pred eEeecCCCCeEEEEeCCCCCCEEEEEeC------------CCeEEEEeCCCCCCCeEEeecC-------------CCCEE
Confidence 333333 678899999999976555433 23899999985 22 2333222 23457
Q ss_pred ceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCC---------CCceEE---eecccccCceeeccCCceE
Q 002194 403 SINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG---------EGPEIL---HKLDLRYGGISWCDDSLAL 470 (954)
Q Consensus 403 ~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g---------~~~~~l---~~~~~~~~~~~~spDg~~l 470 (954)
.+.|+|+|+.+++.. +..+.|.+|++..... +....+ ..+...+..++|+|+++++
T Consensus 326 ~i~~sp~~~~~l~s~------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 393 (430)
T 2xyi_A 326 QVQWSPHNETILASS------------GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWI 393 (430)
T ss_dssp EEEECSSCTTEEEEE------------ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTE
T ss_pred EEEECCCCCCEEEEE------------eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCE
Confidence 899999998765541 2245688888621110 001222 2345567889999999965
Q ss_pred EEEEeccccceEEEEEc
Q 002194 471 VYESWYKTRRTRTWVIS 487 (954)
Q Consensus 471 ~~~~~~~~~~~~l~~~d 487 (954)
+++...++ ..+||.++
T Consensus 394 l~s~s~dg-~i~iw~~~ 409 (430)
T 2xyi_A 394 ICSVSEDN-IMQVWQMA 409 (430)
T ss_dssp EEEEETTS-EEEEEEEC
T ss_pred EEEEECCC-CEEEeEcc
Confidence 55555443 35677664
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.9e-10 Score=121.34 Aligned_cols=179 Identities=13% Similarity=0.019 Sum_probs=111.8
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC---
Q 002194 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--- 780 (954)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--- 780 (954)
+...| +.||.|+. .+..|+|.+...........+|+.+.++.+.. ..++.|+||||||.++..++.+.
T Consensus 102 ~~~~L-~~~~~v~~---~d~~G~G~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~lvGhS~Gg~vA~~~A~~~~~~ 172 (319)
T 3lcr_A 102 LAEEL-DAGRRVSA---LVPPGFHGGQALPATLTVLVRSLADVVQAEVA-----DGEFALAGHSSGGVVAYEVARELEAR 172 (319)
T ss_dssp HHHHH-CTTSEEEE---EECTTSSTTCCEESSHHHHHHHHHHHHHHHHT-----TSCEEEEEETHHHHHHHHHHHHHHHT
T ss_pred HHHHh-CCCceEEE---eeCCCCCCCCCCCCCHHHHHHHHHHHHHHhcC-----CCCEEEEEECHHHHHHHHHHHHHHhc
Confidence 34344 78999999 56667776655444456666666666655432 25899999999999999999887
Q ss_pred CCcccEEEEeccCCCCCCC-CC-CCccc-cchhhhc----------------HHHHHhcCcccccCCCCCCEEEEEeCCC
Q 002194 781 PHLFCCGIARSGAYNRTLT-PF-GFQNE-DRTLWEA----------------TSTYVEMSPFMSANKLKKPILLVHGEED 841 (954)
Q Consensus 781 p~~~~a~v~~~~~~~~~~~-~~-~~~~~-~~~~~~~----------------~~~~~~~sp~~~~~~~~~P~Lii~G~~D 841 (954)
|++++++|++++....... .. .+... ....... ...+...-......++++|+|+++|++|
T Consensus 173 ~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~PvLli~g~~~ 252 (319)
T 3lcr_A 173 GLAPRGVVLIDSYSFDGDGGRPEELFRSALNERFVEYLRLTGGGNLSQRITAQVWCLELLRGWRPEGLTAPTLYVRPAQP 252 (319)
T ss_dssp TCCCSCEEEESCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTTTCCCCCCSSCEEEEEESSC
T ss_pred CCCccEEEEECCCCCCccchhhHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHhcCCCCCcCCCEEEEEeCCC
Confidence 7889999998765321110 00 00000 0000000 0011111111122578899999999984
Q ss_pred CCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCc-ccHHHHHHHHHHHHHHhc
Q 002194 842 NNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR-ESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 842 ~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~-~~~~~~~~~i~~fl~~~l 898 (954)
.++ +.....+.+.+... .+++++++ +|..... +....+.+.|.+||.+..
T Consensus 253 -~~~--~~~~~~~~~~~~~~---~~~~~~~g-~H~~~~~~~~~~~va~~i~~fL~~~~ 303 (319)
T 3lcr_A 253 -LVE--QEKPEWRGDVLAAM---GQVVEAPG-DHFTIIEGEHVASTAHIVGDWLREAH 303 (319)
T ss_dssp -SSS--CCCTHHHHHHHHTC---SEEEEESS-CTTGGGSTTTHHHHHHHHHHHHHHHH
T ss_pred -CCC--cccchhhhhcCCCC---ceEEEeCC-CcHHhhCcccHHHHHHHHHHHHHhcc
Confidence 555 56666776666543 57778887 5654333 578889999999998864
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=99.18 E-value=6.2e-10 Score=120.64 Aligned_cols=196 Identities=15% Similarity=0.135 Sum_probs=117.7
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCCCCCCCCcccc---hhhHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEA 745 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~ 745 (954)
.|.||++||++.... .| ......|++ .+|.|++ .|.+|+|.+... ........+|+.+
T Consensus 38 ~p~lvllHG~~~~~~-----------~w----~~~~~~L~~~~~~~via---~Dl~GhG~S~~~~~~~~~~~~~a~dl~~ 99 (316)
T 3c5v_A 38 GPVLLLLHGGGHSAL-----------SW----AVFTAAIISRVQCRIVA---LDLRSHGETKVKNPEDLSAETMAKDVGN 99 (316)
T ss_dssp SCEEEEECCTTCCGG-----------GG----HHHHHHHHTTBCCEEEE---ECCTTSTTCBCSCTTCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCcccc-----------cH----HHHHHHHhhcCCeEEEE---ecCCCCCCCCCCCccccCHHHHHHHHHH
Confidence 478999999642110 11 123444544 2899999 677888888543 1235677889888
Q ss_pred HHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh--CCCcccEEEEeccCCCCC------------CCCCCCccc-c---
Q 002194 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAYNRT------------LTPFGFQNE-D--- 807 (954)
Q Consensus 746 av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~~~~------------~~~~~~~~~-~--- 807 (954)
.++.+... + ++++.|+||||||.+|+.+|.+ +|+ ++++|++++..... ..+..+... .
T Consensus 100 ~l~~l~~~--~-~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (316)
T 3c5v_A 100 VVEAMYGD--L-PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFKSLENAIE 175 (316)
T ss_dssp HHHHHHTT--C-CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESCCHHHHHHHHHHHHHHHHHSCSCBSSHHHHHH
T ss_pred HHHHHhcc--C-CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEcccccchhhhHHHHHHHHhhCccccccHHHHHH
Confidence 88887422 1 2589999999999999999996 466 89998876421000 000000000 0
Q ss_pred --------chhh---h-cHHHHH-------------------hcCc--------------ccccCCCCCCEEEEEeCCCC
Q 002194 808 --------RTLW---E-ATSTYV-------------------EMSP--------------FMSANKLKKPILLVHGEEDN 842 (954)
Q Consensus 808 --------~~~~---~-~~~~~~-------------------~~sp--------------~~~~~~~~~P~Lii~G~~D~ 842 (954)
.... . .+.... .... ...+.++++|+|+++|+.|.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lli~g~~D~ 255 (316)
T 3c5v_A 176 WSVKSGQIRNLESARVSMVGQVKQCEGITSPEGSKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDR 255 (316)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHEEECC------------CEEESCCGGGGHHHHHHHHTTHHHHHHHSSSCEEEEESSCCC
T ss_pred HhhhcccccchhhhhhhhhHHhhhccccccccccccccceeeeecccchhhhhhhhhhhhHHHhhcCCCCEEEEEecccc
Confidence 0000 0 000000 0000 00112578999999999997
Q ss_pred CCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 843 NSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 843 ~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
..+ .... ..+. ..++++++|++||... .+..+.+.+.|.+||.+.
T Consensus 256 ~~~--~~~~----~~~~---~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 300 (316)
T 3c5v_A 256 LDK--DLTI----GQMQ---GKFQMQVLPQCGHAVH-EDAPDKVAEAVATFLIRH 300 (316)
T ss_dssp CCH--HHHH----HHHT---TCSEEEECCCCSSCHH-HHSHHHHHHHHHHHHHHT
T ss_pred ccc--HHHH----HhhC---CceeEEEcCCCCCccc-ccCHHHHHHHHHHHHHhc
Confidence 643 2111 1221 2358999999999874 566778889999999764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-09 Score=114.67 Aligned_cols=251 Identities=10% Similarity=0.022 Sum_probs=149.8
Q ss_pred CCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcc
Q 002194 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (954)
Q Consensus 112 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~ 191 (954)
.+++|+|||+.|+++... . ..|++|+..+ + .+.+.. ....+
T Consensus 31 eg~~~d~~g~~l~~~~~~----------------------~----------~~i~~~~~~~----~-~~~~~~--~~~~~ 71 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDVR----------------------Q----------NRTWAWSDDG----Q-LSPEMH--PSHHQ 71 (296)
T ss_dssp EEEEEEGGGTEEEEEEGG----------------------G----------TEEEEEETTS----C-EEEEES--SCSSE
T ss_pred cCCeEeCCCCEEEEEeCC----------------------C----------CEEEEEECCC----C-eEEEEC--CCCCc
Confidence 478999999977776542 0 3688888743 3 344432 22356
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCC
Q 002194 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (954)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (954)
..++++|||+.++.. .+...|++++.++|+.+.+...........+..++++|||++++..... +.
T Consensus 72 ~~l~~~~dg~l~v~~---------~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~--g~--- 137 (296)
T 3e5z_A 72 NGHCLNKQGHLIACS---------HGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTY--GI--- 137 (296)
T ss_dssp EEEEECTTCCEEEEE---------TTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSH--HH---
T ss_pred ceeeECCCCcEEEEe---------cCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcc--cc---
Confidence 778999999854432 1346899999978877666432111101114578999999855532000 00
Q ss_pred CCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-ccccccccCCCCcEEEEEe
Q 002194 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISS 350 (954)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s 350 (954)
... . .......+ .....||.++.+|+.+.+... .....++|||||+.+ ++.
T Consensus 138 ------------~~~--------~-~~~~~~~~------~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~l-v~~ 189 (296)
T 3e5z_A 138 ------------DKP--------E-EGYGGEME------LPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLL-VSD 189 (296)
T ss_dssp ------------HCG--------G-GSSCCCCC------SSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEE-EEE
T ss_pred ------------ccc--------c-cccccccc------CCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEE-EEe
Confidence 000 0 00000000 023468888877766666554 556788999999998 554
Q ss_pred ecCCcccccccCCCCcceEEEecc-CceE---EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 351 IHRPYSFIVPCGRFPRQVGVWTTD-GIFV---RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~l~d~~-g~~~---~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
.. ...|++|+++ .+.. ..+... . ...+..+++++||+ |++.
T Consensus 190 ~~------------~~~i~~~~~~~~g~~~~~~~~~~~--~----------~~~p~~i~~d~~G~-l~v~---------- 234 (296)
T 3e5z_A 190 TG------------DNATHRYCLNARGETEYQGVHFTV--E----------PGKTDGLRVDAGGL-IWAS---------- 234 (296)
T ss_dssp TT------------TTEEEEEEECSSSCEEEEEEEECC--S----------SSCCCSEEEBTTSC-EEEE----------
T ss_pred CC------------CCeEEEEEECCCCcCcCCCeEeeC--C----------CCCCCeEEECCCCC-EEEE----------
Confidence 22 2379999986 3333 222211 1 12345789999996 3333
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEeecccccCceee-ccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW-CDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~-spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
. .+.|++++. ++.....+..... +..++| +||++.|+.++. ..||.+++.+.
T Consensus 235 ---~-~~~v~~~~~---~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~-----~~l~~~~~~~~ 287 (296)
T 3e5z_A 235 ---A-GDGVHVLTP---DGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVS-----TEFWSIETNVR 287 (296)
T ss_dssp ---E-TTEEEEECT---TSCEEEEEECSSC-CCEEEEESTTSCEEEEEET-----TEEEEEECSCC
T ss_pred ---c-CCeEEEECC---CCCEEEEEECCCC-ceeEEEECCCCCEEEEEcC-----CeEEEEEcccc
Confidence 1 347888885 5554455555555 788899 589998888753 25999998875
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-08 Score=108.26 Aligned_cols=282 Identities=12% Similarity=0.107 Sum_probs=162.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
+.+.+.|||++ .||... ...|+++|+++|+..++...... ...+..++|+|||+.|+...
T Consensus 27 y~~~l~WS~~~-~lAvg~----------D~tV~iWd~~tg~~~~~~~~~~~--~~~V~~v~~~~~~~~l~sgs------- 86 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL----------DNSVYLWSASSGDILQLLQMEQP--GEYISSVAWIKEGNYLAVGT------- 86 (318)
T ss_dssp TCBCEEECTTS-EEEEEE----------TTEEEEEETTTCCEEEEEECCST--TCCEEEEEECTTSSEEEEEE-------
T ss_pred cceEEEECCCC-EEEEEe----------CCEEEEEECCCCCEEEEEEecCC--CCeEEEEEECCCCCEEEEEE-------
Confidence 34568999987 666542 35788999999987665433221 11267899999999998761
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCccccccccCCCCcEEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (954)
....|.++++ +|+..............++++++.++.
T Consensus 87 ------------------------------------------~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s 124 (318)
T 4ggc_A 87 ------------------------------------------SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSS 124 (318)
T ss_dssp ------------------------------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred ------------------------------------------CCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEE
Confidence 1234667777 665433222211223456778888777
Q ss_pred EeecCCcccccccCCCCcceEEEeccCce--EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
.+.. ..+.+|+..... ...+..+. ..+....|+++|+.++..
T Consensus 125 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~s~---------- 168 (318)
T 4ggc_A 125 GSRS-------------GHIHHHDVRVAEHHVATLSGHS-------------QEVCGLRWAPDGRHLASG---------- 168 (318)
T ss_dssp EETT-------------SEEEEEETTSSSCEEEEEECCS-------------SCEEEEEECTTSSEEEEE----------
T ss_pred EecC-------------CceEeeecCCCceeEEEEcCcc-------------CceEEEEEcCCCCEEEEE----------
Confidence 6633 256667666432 22222221 234567899999866554
Q ss_pred ccccCCCeEEEEecCCCCCCC----ceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCC
Q 002194 427 VEVTPRDIIYTQQAEPVQGEG----PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~----~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 502 (954)
+..+.|.+|++ ..+.. ..........+..+.|+|++..+++...... ...|.+.+.... ...... ..
T Consensus 169 ---~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~i~lwd~~~~--~~~~~~-~~ 239 (318)
T 4ggc_A 169 ---GNDNLVNVWPS--APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS-DRHIRIWNVCSG--ACLSAV-DA 239 (318)
T ss_dssp ---ETTSCEEEEES--SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT-TCEEEEEETTTC--CEEEEE-EC
T ss_pred ---ecCcceeEEEC--CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC-CCEEEEEecccc--cccccc-cc
Confidence 33557888886 22221 1222334555677899999887765543222 133445555553 112221 12
Q ss_pred CCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEe
Q 002194 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVAL 582 (954)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 582 (954)
...+.. ..|+|+++.++..... ....|++||+.+++.......... .+..
T Consensus 240 ~~~v~~------~~~~~~~~~~~~~sg~-------------------~d~~i~iwd~~~~~~~~~l~gH~~----~V~~- 289 (318)
T 4ggc_A 240 HSQVCS------ILWSPHYKELISGHGF-------------------AQNQLVIWKYPTMAKVAELKGHTS----RVLS- 289 (318)
T ss_dssp SSCEEE------EEEETTTTEEEEEECT-------------------TTCCEEEEETTTCCEEEEECCCSS----CEEE-
T ss_pred eeeeee------eeecccccceEEEEEc-------------------CCCEEEEEECCCCcEEEEEcCCCC----CEEE-
Confidence 222222 6789999888776511 123499999998876554433211 1222
Q ss_pred ccCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002194 583 MSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (954)
Q Consensus 583 ~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~ 618 (954)
.+|+|||+.|+.... -..+.+|++.+
T Consensus 290 ------l~~spdg~~l~S~s~----D~~v~iWd~~~ 315 (318)
T 4ggc_A 290 ------LTMSPDGATVASAAA----DETLRLWRCFE 315 (318)
T ss_dssp ------EEECTTSSCEEEEET----TTEEEEECCSC
T ss_pred ------EEEcCCCCEEEEEec----CCeEEEEECCC
Confidence 468999987663322 24588888644
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=124.45 Aligned_cols=200 Identities=19% Similarity=0.108 Sum_probs=114.9
Q ss_pred CccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002194 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (954)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (954)
..|.||++||..... ++..| ...... ...+|.|+. ++..|+|.+...........+|+.+.
T Consensus 66 ~~~~lvllhG~~~~~---------~~~~~----~~~~~~-l~~~~~v~~---~d~~G~G~s~~~~~~~~~~a~~~~~~-- 126 (300)
T 1kez_A 66 GEVTVICCAGTAAIS---------GPHEF----TRLAGA-LRGIAPVRA---VPQPGYEEGEPLPSSMAAVAAVQADA-- 126 (300)
T ss_dssp CSSEEEECCCSSTTC---------STTTT----HHHHHH-TSSSCCBCC---CCCTTSSTTCCBCSSHHHHHHHHHHH--
T ss_pred CCCeEEEECCCcccC---------cHHHH----HHHHHh-cCCCceEEE---ecCCCCCCCCCCCCCHHHHHHHHHHH--
Confidence 368899999963211 00111 122222 235799998 66778887654433345555554433
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC---CcccEEEEeccCCCCCCCC----------CCCcccc----chhh
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGAYNRTLTP----------FGFQNED----RTLW 811 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~~~~~~~~----------~~~~~~~----~~~~ 811 (954)
+.+. .+..++.++||||||.+++.++.+.| ++++++|++++........ ..+.... ....
T Consensus 127 -l~~~--~~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (300)
T 1kez_A 127 -VIRT--QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAMNAWLEELTATLFDRETVRMDDTRL 203 (300)
T ss_dssp -HHHH--CSSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCCTTTCHHHHHHHHHHHGGGCCCCSSCCCHHHH
T ss_pred -HHHh--cCCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCCCcchhHHHHHHHHHHHHHHhCcCCccchHHH
Confidence 3332 23468999999999999999999987 4899999988754321100 0000000 0000
Q ss_pred hcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHH
Q 002194 812 EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETD 891 (954)
Q Consensus 812 ~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 891 (954)
.....+...-......++++|+|+++|+ |..++ +.. ..+.+ ....+++++++++ +|.....+....+.+.|.
T Consensus 204 ~~~~~~~~~~~~~~~~~i~~P~lii~G~-d~~~~--~~~-~~~~~---~~~~~~~~~~i~g-gH~~~~~e~~~~~~~~i~ 275 (300)
T 1kez_A 204 TALGAYDRLTGQWRPRETGLPTLLVSAG-EPMGP--WPD-DSWKP---TWPFEHDTVAVPG-DHFTMVQEHADAIARHID 275 (300)
T ss_dssp HHHHHHHHHTTTCCCCCCSCCBEEEEES-SCSSC--CCS-SCCSC---CCSSCCEEEEESS-CTTTSSSSCSHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCCEEEEEeC-CCCCC--Ccc-cchhh---hcCCCCeEEEecC-CChhhccccHHHHHHHHH
Confidence 0011111111111246788999999995 66665 433 22211 1123468999999 998753366678888888
Q ss_pred HHHHHhc
Q 002194 892 RWLQKYC 898 (954)
Q Consensus 892 ~fl~~~l 898 (954)
+||.+..
T Consensus 276 ~fl~~~~ 282 (300)
T 1kez_A 276 AWLGGGN 282 (300)
T ss_dssp HHHTCC-
T ss_pred HHHHhcc
Confidence 8887653
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-09 Score=117.28 Aligned_cols=111 Identities=15% Similarity=0.079 Sum_probs=75.2
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+++.... + . -|.||++||.+.... .|. .... .++.+|.|++ .+..|+
T Consensus 12 ~~~~~~~~~~~---g-----~--g~~~vllHG~~~~~~-----------~w~----~~~~-~l~~~~~vi~---~Dl~G~ 62 (291)
T 3qyj_A 12 TTEARINLVKA---G-----H--GAPLLLLHGYPQTHV-----------MWH----KIAP-LLANNFTVVA---TDLRGY 62 (291)
T ss_dssp CSSCEEEEEEE---C-----C--SSEEEEECCTTCCGG-----------GGT----TTHH-HHTTTSEEEE---ECCTTS
T ss_pred cCCeEEEEEEc---C-----C--CCeEEEECCCCCCHH-----------HHH----HHHH-HHhCCCEEEE---EcCCCC
Confidence 57788876543 1 1 367889999753211 121 1222 3467999999 666788
Q ss_pred CCcccch-------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEecc
Q 002194 727 GDEEAND-------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (954)
Q Consensus 727 G~~~~~~-------~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (954)
|.+..+. .......+|+.+.++.+ ..+++.++||||||.+++.++.++|++++++|++++
T Consensus 63 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 129 (291)
T 3qyj_A 63 GDSSRPASVPHHINYSKRVMAQDQVEVMSKL------GYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDI 129 (291)
T ss_dssp TTSCCCCCCGGGGGGSHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred CCCCCCCCCccccccCHHHHHHHHHHHHHHc------CCCCEEEEEEChHHHHHHHHHHhCchhccEEEEECC
Confidence 8775432 12344556666555443 235799999999999999999999999999998864
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.1e-09 Score=117.19 Aligned_cols=134 Identities=8% Similarity=0.003 Sum_probs=79.4
Q ss_pred ccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 336 ~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
.+.+++||+.++|.+.. +.+++.|..++..+.+...+......+.......+...++++|||+++++
T Consensus 269 ~~~~~~dg~~~~~~s~~-------------g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 269 HPAFSLRSGRLVWPTYT-------------GKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCEECTTTCEEEEEBTT-------------SEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred EeeecCCCCEEEEEeCC-------------CcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 45679999999998732 37899998866544333211110000000011123345789999998777
Q ss_pred EEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
.......+. .....+.|.++|+ .+.+. ..+. ......++.|+|||+.++|..+... ..|.++|+.+.
T Consensus 336 a~~~~~~gt---hk~~s~~VsVID~---~T~kvv~~I~-vg~~P~gia~spDg~~~lyv~n~~s--~~VsVID~~t~ 403 (426)
T 3c75_H 336 LVDQRDEWK---HKAASRFVVVLNA---ETGERINKIE-LGHEIDSINVSQDAEPLLYALSAGT--QTLHIYDAATG 403 (426)
T ss_dssp EEEECCTTC---TTSCEEEEEEEET---TTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTT--TEEEEEETTTC
T ss_pred Eeccccccc---ccCCCCEEEEEEC---CCCeEEEEEE-CCCCcCeEEEccCCCEEEEEEcCCC--CeEEEEECCCC
Confidence 643211000 0012357999996 44443 3443 2335788999999996667766433 46999999986
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-09 Score=115.68 Aligned_cols=239 Identities=13% Similarity=0.042 Sum_probs=136.3
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..|++|+..+ ++.+.+.. .....+..++|+|||+.++.... +......|++++.+++..+.+......
T Consensus 66 ~~i~~~d~~~----~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~-----~~~~~~~i~~~d~~~~~~~~~~~~~~~-- 133 (333)
T 2dg1_A 66 GNIFKINPET----KEIKRPFV-SHKANPAAIKIHKDGRLFVCYLG-----DFKSTGGIFAATENGDNLQDIIEDLST-- 133 (333)
T ss_dssp CEEEEECTTT----CCEEEEEE-CSSSSEEEEEECTTSCEEEEECT-----TSSSCCEEEEECTTSCSCEEEECSSSS--
T ss_pred CEEEEEeCCC----CcEEEEee-CCCCCcceEEECCCCcEEEEeCC-----CCCCCceEEEEeCCCCEEEEEEccCcc--
Confidence 3688888743 44444431 12235778899999975444321 111236899999998876643221110
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
...+..+.++|||++++..... . ..+ ....||+++.
T Consensus 134 ~~~~~~i~~d~~g~l~v~~~~~-~-----------------------------------~~~-------~~~~l~~~~~~ 170 (333)
T 2dg1_A 134 AYCIDDMVFDSKGGFYFTDFRG-Y-----------------------------------STN-------PLGGVYYVSPD 170 (333)
T ss_dssp CCCEEEEEECTTSCEEEEECCC-B-----------------------------------TTB-------CCEEEEEECTT
T ss_pred CCcccceEECCCCCEEEEeccc-c-----------------------------------ccC-------CCceEEEEeCC
Confidence 0115578899999755543100 0 000 2346888888
Q ss_pred CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc--CceEEEeccCCCcccCCccccccc
Q 002194 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVR 398 (954)
Q Consensus 322 ~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~~~~l~~~~~~~~~p~~~~~~~ 398 (954)
+++.+.+... .....++|+|||++|++..... ..|++|+++ +.....+....... +.+.
T Consensus 171 ~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~------------~~i~~~d~~~~g~~~~~~~~~~~~~-----~~~~- 232 (333)
T 2dg1_A 171 FRTVTPIIQNISVANGIALSTDEKVLWVTETTA------------NRLHRIALEDDGVTIQPFGATIPYY-----FTGH- 232 (333)
T ss_dssp SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGG------------TEEEEEEECTTSSSEEEEEEEEEEE-----CCSS-
T ss_pred CCEEEEeecCCCcccceEECCCCCEEEEEeCCC------------CeEEEEEecCCCcCcccccceEEEe-----cCCC-
Confidence 5566655433 4456789999999888775322 278899985 33332221000000 0000
Q ss_pred cCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeeccc------ccCceeeccCCceEEE
Q 002194 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL------RYGGISWCDDSLALVY 472 (954)
Q Consensus 399 ~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~------~~~~~~~spDg~~l~~ 472 (954)
..+..+.+++||+ + |... ...+.|++++. ++.....+..... .+..++|+|||+.|++
T Consensus 233 ~~~~~i~~d~~G~-l-~v~~-----------~~~~~v~~~d~---~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v 296 (333)
T 2dg1_A 233 EGPDSCCIDSDDN-L-YVAM-----------YGQGRVLVFNK---RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLII 296 (333)
T ss_dssp SEEEEEEEBTTCC-E-EEEE-----------ETTTEEEEECT---TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred CCCCceEECCCCC-E-EEEE-----------cCCCEEEEECC---CCCEEEEEEcCCCccccccCcceEEECCCCCEEEE
Confidence 1234688999996 2 2211 12347888884 5444444433322 4678999999988887
Q ss_pred EEeccc--cceEEEEEcCCC
Q 002194 473 ESWYKT--RRTRTWVISPGS 490 (954)
Q Consensus 473 ~~~~~~--~~~~l~~~d~~~ 490 (954)
+..... ....||.+++..
T Consensus 297 ~~~~g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 297 CSNDIEMGGGSMLYTVNGFA 316 (333)
T ss_dssp EEECGGGTCCEEEEEEECSS
T ss_pred EeCccCCCCCceEEEEeccc
Confidence 765432 236789888764
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.13 E-value=9.1e-09 Score=116.75 Aligned_cols=231 Identities=9% Similarity=0.069 Sum_probs=134.7
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC----------Cce-eecccCCCccccccccceeEecCCe-
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT----------GKA-RPLFQSPDIYLNAIFDNFVWVNNST- 256 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~----------g~~-~~lt~~~~~~~~~~~~~~~wspDG~- 256 (954)
..+..++|+|++..++++.. . ...|.++++.. ... ..+..+.. .+..+.|+|+++
T Consensus 129 ~~v~~l~~~p~~~~~lat~~------~--dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~ 195 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKT------P--SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-----EGYGLSWNPNLNG 195 (430)
T ss_dssp SCCSEEEEETTEEEEEEEEC------S--SSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-----CCCCEEECTTSTT
T ss_pred CcEEEEEECCCCCcEEEEEC------C--CCcEEEEECCCcccccCccccCCCcEEecCCCC-----CeEEEEeCCCCCC
Confidence 46899999998555555432 2 34566667654 121 22222222 266899999998
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-c-------eeE
Q 002194 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-T-------VKE 327 (954)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~-------~~~ 327 (954)
.|+... ..+.|.++++ ++ . ...
T Consensus 196 ~l~s~~-------------------------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~ 226 (430)
T 2xyi_A 196 YLLSAS-------------------------------------------------DDHTICLWDINATPKEHRVIDAKNI 226 (430)
T ss_dssp EEEEEC-------------------------------------------------TTSCEEEEETTSCCBGGGEEECSEE
T ss_pred eEEEEe-------------------------------------------------CCCeEEEEeCCCCCCCCceecccee
Confidence 776551 1234666666 42 1 122
Q ss_pred cCCC-ccccccccCCCCc-EEEEEeecCCcccccccCCCCcceEEEeccCce----EEEeccCCCcccCCccccccccCc
Q 002194 328 IGPP-AVYTSLDPSPDEK-YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLAEDIPIAFNSVRKGM 401 (954)
Q Consensus 328 l~~~-~~~~~~~~SpDGk-~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~----~~~l~~~~~~~~~p~~~~~~~~g~ 401 (954)
+... ..+..++|+|++. .++..+ . .+.|.+||+..+. ...+.. ....+
T Consensus 227 ~~~h~~~v~~v~~~p~~~~~l~s~~-~------------dg~i~i~d~~~~~~~~~~~~~~~-------------~~~~v 280 (430)
T 2xyi_A 227 FTGHTAVVEDVAWHLLHESLFGSVA-D------------DQKLMIWDTRNNNTSKPSHTVDA-------------HTAEV 280 (430)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEE-T------------TSEEEEEETTCSCSSSCSEEEEC-------------CSSCE
T ss_pred ecCCCCCEeeeEEeCCCCCEEEEEe-C------------CCeEEEEECCCCCCCcceeEeec-------------CCCCe
Confidence 3333 6678899999554 444444 2 2389999998542 122211 22456
Q ss_pred cceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCC-CCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ-GEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
+.++|+|+++.+++.. +..+.|.+|++ .. +.....+..+...+..+.|+|+++.++++...++ .
T Consensus 281 ~~i~~~p~~~~~l~tg------------~~dg~v~vwd~--~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~-~ 345 (430)
T 2xyi_A 281 NCLSFNPYSEFILATG------------SADKTVALWDL--RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR-R 345 (430)
T ss_dssp EEEEECSSCTTEEEEE------------ETTSEEEEEET--TCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS-C
T ss_pred EEEEeCCCCCCEEEEE------------eCCCeEEEEeC--CCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC-c
Confidence 7899999999765541 23457899996 22 2334556667778889999999987666655543 2
Q ss_pred eEEEEEcCCCCC----------CCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 481 TRTWVISPGSKD----------VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 481 ~~l~~~d~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
..||.+...+.. .........+...+.. +.|+|+++++++..
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~------~~~~p~~~~~l~s~ 397 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD------FSWNPNEPWIICSV 397 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEE------EEECSSSTTEEEEE
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceE------EEECCCCCCEEEEE
Confidence 566665542210 0111222222223333 78999999554444
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-09 Score=132.14 Aligned_cols=229 Identities=12% Similarity=0.103 Sum_probs=139.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc--eeecccCCCccccccccceeEecC--CeEEEEEecC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNN--STLLVCTIPL 264 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wspD--G~~l~~~~~~ 264 (954)
..+..++|||||+.|+... . ...|.++++.++. .......... .+..+.|+|+ |+.|+...
T Consensus 10 ~~V~~l~~s~dg~~latg~-------~--dg~I~vwd~~~~~~~~~~~l~~h~~----~V~~l~~s~~~~~~~l~s~s-- 74 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCS-------S--DKTIKIFEVEGETHKLIDTLTGHEG----PVWRVDWAHPKFGTILASCS-- 74 (753)
T ss_dssp CCEEEECCCSSSCCEEEEE-------T--TTEEEEEEEETTEEEEEEEECCCSS----CEEEEEECCTTSCSEEEEEE--
T ss_pred ceeEEEEECCCCCeEEEEE-------C--CCcEEEEecCCCCCccceeccCCcC----ceEEEEecCCCCCCEEEEEe--
Confidence 4688899999999988864 2 3355555555433 2222222222 2778999988 88888761
Q ss_pred CCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc---eeEcCCC-cccccccc
Q 002194 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLDP 339 (954)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~---~~~l~~~-~~~~~~~~ 339 (954)
..+.|.++++ ++. ...+... ..+..++|
T Consensus 75 -----------------------------------------------~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~ 107 (753)
T 3jro_A 75 -----------------------------------------------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 107 (753)
T ss_dssp -----------------------------------------------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred -----------------------------------------------CCCeEEEEECCCCcccccccccCCCCCeEEEEE
Confidence 1234667777 663 3334434 77889999
Q ss_pred CCC--CcEEEEEeecCCcccccccCCCCcceEEEeccCceE---EEeccCCCcccCCccccccccCccceeecc------
Q 002194 340 SPD--EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV---RELCDLPLAEDIPIAFNSVRKGMRSINWRS------ 408 (954)
Q Consensus 340 SpD--Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~---~~l~~~~~~~~~p~~~~~~~~g~~~~~wsp------ 408 (954)
+|+ |+.++..+.+ +.+.+||+.++.. ..+.. ....+..+.|+|
T Consensus 108 sp~~~~~~l~sgs~d-------------g~I~vwdl~~~~~~~~~~~~~-------------~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 108 APHEYGPLLLVASSD-------------GKVSVVEFKENGTTSPIIIDA-------------HAIGVNSASWAPATIEED 161 (753)
T ss_dssp CCGGGCSEEEEEETT-------------SEEEEEECCSSSCCCCEEEEC-------------CSSCEEEEEECCCC----
T ss_pred CCCCCCCEEEEEeCC-------------CcEEEEEeecCCCcceeEeec-------------CCCceEEEEecCcccccc
Confidence 999 9999888743 3899999986521 11111 223456788998
Q ss_pred -------CCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc----eEEeecccccCceeeccC---CceEEEEE
Q 002194 409 -------DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP----EILHKLDLRYGGISWCDD---SLALVYES 474 (954)
Q Consensus 409 -------Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~----~~l~~~~~~~~~~~~spD---g~~l~~~~ 474 (954)
||+.++.. +..+.|.+|++ ..+... ..+..+...+..++|+|+ |+.|+..+
T Consensus 162 ~~~~~~~d~~~l~sg-------------s~dg~I~iwd~--~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 162 GEHNGTKESRKFVTG-------------GADNLVKIWKY--NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp -----CGGGCCEEEE-------------ETTSCEEEEEE--ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred cccccCCCCCEEEEE-------------ECCCeEEEEec--cCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence 57766554 33557888886 222222 223445667888999999 78777776
Q ss_pred eccccceEEEEEcCCCCCCCcEEE-ecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 475 WYKTRRTRTWVISPGSKDVAPRIL-FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 475 ~~~~~~~~l~~~d~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.++. .++|.+............ .......+.. ++|+|||++++...
T Consensus 227 ~Dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~v~~------l~~spdg~~l~s~s 273 (753)
T 3jro_A 227 QDRT--CIIWTQDNEQGPWKKTLLKEEKFPDVLWR------ASWSLSGNVLALSG 273 (753)
T ss_dssp SSSC--EEEEEESSSSSCCBCCBSSSSCCSSCCCC------EEECTTTCCEEEEC
T ss_pred cCCE--EEEecCCCCCCcceeEEeccCCCCCceEE------EEEcCCCCEEEEEc
Confidence 5443 666666543321010111 1111122222 78999999888765
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-09 Score=112.43 Aligned_cols=152 Identities=14% Similarity=0.124 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC-----cccEEEEeccCCCCCCCCC---C--Cccc
Q 002194 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-----LFCCGIARSGAYNRTLTPF---G--FQNE 806 (954)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~~~~~~~~~~~---~--~~~~ 806 (954)
....+++.+++++|.++..+ +++.++||||||.+++.++.++|. +++.+|++++.++...... . ....
T Consensus 77 ~~~~~~l~~~i~~l~~~~~~--~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~~~~~~ 154 (249)
T 3fle_A 77 KENAYWIKEVLSQLKSQFGI--QQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMNENVNEIIVDK 154 (249)
T ss_dssp HHHHHHHHHHHHHHHHTTCC--CEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTSSCTTTSCBCT
T ss_pred HHHHHHHHHHHHHHHHHhCC--CceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCcccccCCcchhhhcc
Confidence 44577888889999877433 589999999999999999998863 7999999998765321100 0 0000
Q ss_pred cchhhhcHHHHHhcC-cccccCCCCCCEEEEEeC------CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC--CCCcC
Q 002194 807 DRTLWEATSTYVEMS-PFMSANKLKKPILLVHGE------EDNNSGTLTMQSDRFFNALKGHGALCRLVILPF--ESHGY 877 (954)
Q Consensus 807 ~~~~~~~~~~~~~~s-p~~~~~~~~~P~Lii~G~------~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~H~~ 877 (954)
.+.+......|...- -...+.+.++|+|.|+|+ .|..|| ...++.+...++......+.+.+.| +.|..
T Consensus 155 ~g~p~~~~~~~~~l~~~~~~~p~~~~~vl~I~G~~~~~~~sDG~V~--~~Sa~~~~~l~~~~~~~y~e~~v~g~~a~Hs~ 232 (249)
T 3fle_A 155 QGKPSRMNAAYRQLLSLYKIYCGKEIEVLNIYGDLEDGSHSDGRVS--NSSSQSLQYLLRGSTKSYQEMKFKGAKAQHSQ 232 (249)
T ss_dssp TCCBSSCCHHHHHTGGGHHHHTTTTCEEEEEEEECCSSSCBSSSSB--HHHHHTHHHHSTTCSSEEEEEEEESGGGSTGG
T ss_pred cCCCcccCHHHHHHHHHHhhCCccCCeEEEEeccCCCCCCCCCccc--HHHHHHHHHHHhhCCCceEEEEEeCCCCchhc
Confidence 111111112222211 012223356899999998 699998 8888887777777777777777876 88987
Q ss_pred CCcccHHHHHHHHHHHH
Q 002194 878 AARESIMHVLWETDRWL 894 (954)
Q Consensus 878 ~~~~~~~~~~~~i~~fl 894 (954)
.. ++ ..+.+.|.+||
T Consensus 233 l~-~n-~~V~~~I~~FL 247 (249)
T 3fle_A 233 LH-EN-KDVANEIIQFL 247 (249)
T ss_dssp GG-GC-HHHHHHHHHHH
T ss_pred cc-cC-HHHHHHHHHHh
Confidence 53 33 47778888887
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.2e-09 Score=114.79 Aligned_cols=232 Identities=9% Similarity=-0.000 Sum_probs=137.6
Q ss_pred ceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcccc
Q 002194 114 LSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNF 193 (954)
Q Consensus 114 ~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~ 193 (954)
.++++|++.|+..+.+ +.|++|++.. + .....+. ...+..
T Consensus 42 ~~~~~d~~~l~sg~~D---------------------------------g~v~iwd~~~-~--~~~~~~~----~~~v~~ 81 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCED---------------------------------GALHFTQLKD-S--KTITTIT----TPNPRT 81 (343)
T ss_dssp SSSSEEEEEEEEEEET---------------------------------TEEEEEEESS-S--SCEEEEE----EECCCT
T ss_pred hhhcCCCCEEEEECCC---------------------------------CcEEEEECCC-C--cEEEEEe----cCCcee
Confidence 4567899988888776 5899999964 2 1222332 123556
Q ss_pred eeecCCCCeEEEEEeeccccCCCCce-------EEEEEECCCCce-eecccCCCccccccccceeEec--CCeEEEEEec
Q 002194 194 VTWSQDGKHLAFSIRIDAEDSSSSKL-------RVWVADVDTGKA-RPLFQSPDIYLNAIFDNFVWVN--NSTLLVCTIP 263 (954)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~-------~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wsp--DG~~l~~~~~ 263 (954)
..|+|+ |+..+ .++.. .+.+++..+++. +.+...... .+..+.|+| +|+.|+...
T Consensus 82 ~~~~~~---~~s~s-------~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~s~s- 146 (343)
T 3lrv_A 82 GGEHPA---IISRG-------PCNRLLLLYPGNQITILDSKTNKVLREIEVDSAN----EIIYMYGHNEVNTEYFIWAD- 146 (343)
T ss_dssp TCCCCS---EEEEC-------STTEEEEEETTTEEEEEETTTCCEEEEEECCCSS----CEEEEECCC---CCEEEEEE-
T ss_pred eeeCCc---eEEec-------CCCeEEEEEccCceEEeecCCcceeEEeecCCCC----CEEEEEcCCCCCCCEEEEEe-
Confidence 666765 33321 11222 333455556552 222212211 267899999 999888661
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcC-CC--cccccccc
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG-PP--AVYTSLDP 339 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~-~~--~~~~~~~~ 339 (954)
....|.++|+ +++...+. .. ..+..++|
T Consensus 147 ------------------------------------------------~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~ 178 (343)
T 3lrv_A 147 ------------------------------------------------NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVL 178 (343)
T ss_dssp ------------------------------------------------TTCCEEEEESSSSCEEEEECCCSSCCCCEEEE
T ss_pred ------------------------------------------------CCCcEEEEECCCCcEEEEEecCCCCceEEEEE
Confidence 1234777888 67654433 22 46788999
Q ss_pred CCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE--EEeccCCCcccCCccccccccCccceeeccCCCCceEEE
Q 002194 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (954)
Q Consensus 340 SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~--~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~ 417 (954)
+|||+.|+..+.+ +.|.+||+..++. ..+.. ++...+..++|+|||+.++..
T Consensus 179 ~pdg~~lasg~~d-------------g~i~iwd~~~~~~~~~~~~~------------~h~~~v~~l~fs~~g~~l~s~- 232 (343)
T 3lrv_A 179 HKDSLLLALYSPD-------------GILDVYNLSSPDQASSRFPV------------DEEAKIKEVKFADNGYWMVVE- 232 (343)
T ss_dssp CTTSCEEEEECTT-------------SCEEEEESSCTTSCCEECCC------------CTTSCEEEEEECTTSSEEEEE-
T ss_pred CCCCCEEEEEcCC-------------CEEEEEECCCCCCCccEEec------------cCCCCEEEEEEeCCCCEEEEE-
Confidence 9999999887633 3899999986542 22322 012456789999999876665
Q ss_pred EeccCCCccccccCCCeEEEEecCCCCCCCceEEee---cccccC--ceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK---LDLRYG--GISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~---~~~~~~--~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+ .+.|.+||+ ..+.....+.. ....+. .++|+|+|++|+..+..++ ..+||.++...
T Consensus 233 ------------~-~~~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~-~i~v~~~~~~~ 294 (343)
T 3lrv_A 233 ------------C-DQTVVCFDL--RKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN-SLTIYKFDKKT 294 (343)
T ss_dssp ------------E-SSBEEEEET--TSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTT-EEEEEEECTTT
T ss_pred ------------e-CCeEEEEEc--CCCCcceeecccccccccccceEEEECCCCCEEEEecCCCC-cEEEEEEcccc
Confidence 2 337899996 23222222221 223334 3999999999998765232 36777776544
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.12 E-value=9e-10 Score=115.05 Aligned_cols=154 Identities=15% Similarity=0.082 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC-----cccEEEEeccCCCCCCC-----CCCCc
Q 002194 735 FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-----LFCCGIARSGAYNRTLT-----PFGFQ 804 (954)
Q Consensus 735 ~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~~~~~~~~~-----~~~~~ 804 (954)
......+|+.++++.+.++..+ +++.++||||||.+++.++.++|+ +++++|++++.++.... .+.+.
T Consensus 72 ~~~~~a~~l~~~i~~l~~~~~~--~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~~~~ 149 (254)
T 3ds8_A 72 TPDDWSKWLKIAMEDLKSRYGF--TQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDNGMDLSFK 149 (254)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHHCSCTTCS
T ss_pred CHHHHHHHHHHHHHHHHHHhCC--CceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCcccccccccccccc
Confidence 3466778888888988877433 589999999999999999999988 89999999987653221 00000
Q ss_pred cccchhhhcHHHHHhcCcccccCCCCCCEEEEEeC------CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC--CCCc
Q 002194 805 NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGE------EDNNSGTLTMQSDRFFNALKGHGALCRLVILPF--ESHG 876 (954)
Q Consensus 805 ~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~------~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~H~ 876 (954)
.. .........+... ...+.+ ++|+|.|||+ .|.+|| ...++.+...++.....++...+.+ ++|.
T Consensus 150 ~~-p~~~~~~~~~~~~--~~~~~~-~~~vl~I~G~~~~~~~~Dg~Vp--~~ss~~l~~~~~~~~~~~~~~~~~g~~a~Hs 223 (254)
T 3ds8_A 150 KL-PNSTPQMDYFIKN--QTEVSP-DLEVLAIAGELSEDNPTDGIVP--TISSLATRLFMPGSAKAYIEDIQVGEDAVHQ 223 (254)
T ss_dssp SC-SSCCHHHHHHHHT--GGGSCT-TCEEEEEEEESBTTBCBCSSSB--HHHHTGGGGTSBTTBSEEEEEEEESGGGCGG
T ss_pred cC-CcchHHHHHHHHH--HhhCCC-CcEEEEEEecCCCCCCCCcEee--HHHHHHHHHHhhccCcceEEEEEeCCCCchh
Confidence 00 0000111111111 111112 6899999999 999999 8888877776665545566666766 6687
Q ss_pred CCCcccHHHHHHHHHHHHHHhc
Q 002194 877 YAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 877 ~~~~~~~~~~~~~i~~fl~~~l 898 (954)
.. .++. ++.+.+.+||.++.
T Consensus 224 ~l-~~~~-~v~~~i~~fL~~~~ 243 (254)
T 3ds8_A 224 TL-HETP-KSIEKTYWFLEKFK 243 (254)
T ss_dssp GG-GGSH-HHHHHHHHHHHTCC
T ss_pred cc-cCCH-HHHHHHHHHHHHhc
Confidence 64 3333 58888999998864
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.7e-08 Score=113.96 Aligned_cols=284 Identities=11% Similarity=0.040 Sum_probs=164.3
Q ss_pred eecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCC
Q 002194 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (954)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~ 274 (954)
.+++|++.|+... ....|.++|+.+++........... +..+.|+||+ .|+...
T Consensus 127 ~~~~~~~~l~sgs---------~dg~i~vwd~~~~~~~~~~~~h~~~----V~~l~~~~~~-~l~s~s------------ 180 (464)
T 3v7d_B 127 CLQFEDNYVITGA---------DDKMIRVYDSINKKFLLQLSGHDGG----VWALKYAHGG-ILVSGS------------ 180 (464)
T ss_dssp EEEEETTEEEEEE---------TTSCEEEEETTTTEEEEEECCCSSC----EEEEEECSTT-EEEEEE------------
T ss_pred EEEECCCEEEEEc---------CCCcEEEEECCCCcEEEEEeCCCcC----EEEEEEcCCC-EEEEEe------------
Confidence 4556788877754 2457788888887765444333322 7789999999 455441
Q ss_pred CCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee-EcCCC-ccccccccC--CCCcEEEEE
Q 002194 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPS--PDEKYILIS 349 (954)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-~l~~~-~~~~~~~~S--pDGk~l~~~ 349 (954)
..+.|.++++ +|+.. .+... ..+..++|+ +|++.|+..
T Consensus 181 -------------------------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~ 223 (464)
T 3v7d_B 181 -------------------------------------TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 223 (464)
T ss_dssp -------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEE
T ss_pred -------------------------------------CCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEE
Confidence 1234777788 66533 33333 667777777 688888887
Q ss_pred eecCCcccccccCCCCcceEEEeccCceEEEeccCCCc--------ccCCc---cccccccCccceeeccCCCCceEEEE
Q 002194 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLA--------EDIPI---AFNSVRKGMRSINWRSDKPSTLYWAE 418 (954)
Q Consensus 350 s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~--------~~~p~---~~~~~~~g~~~~~wspDg~~i~~~~~ 418 (954)
+.+ +.+.+||+.............. ...+. ...+... .-..++++++.++..
T Consensus 224 s~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~-- 286 (464)
T 3v7d_B 224 SRD-------------NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA--SVRTVSGHGNIVVSG-- 286 (464)
T ss_dssp ETT-------------SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS--CEEEEEEETTEEEEE--
T ss_pred cCC-------------CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc--eEEEEcCCCCEEEEE--
Confidence 743 3899999885432111100000 00000 0001111 123457777765554
Q ss_pred eccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002194 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (954)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 498 (954)
+..+.|.+|++ .++.....+..+...+..+.|+|||+.|+..+.++ .|.++|+.++ +....
T Consensus 287 -----------~~d~~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg----~i~vwd~~~~--~~~~~ 347 (464)
T 3v7d_B 287 -----------SYDNTLIVWDV--AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT----TIRIWDLENG--ELMYT 347 (464)
T ss_dssp -----------ETTSCEEEEET--TTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS----CEEEEETTTT--EEEEE
T ss_pred -----------eCCCeEEEEEC--CCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCC--cEEEE
Confidence 34567999996 23333344455666788899999999988776543 2566666664 33333
Q ss_pred ecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccce
Q 002194 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYET 578 (954)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 578 (954)
...+...+.. +.|+ +++++.... ...|.+||+.+++..........
T Consensus 348 ~~~h~~~v~~------~~~~--~~~l~s~s~---------------------dg~v~vwd~~~~~~~~~~~~~~~----- 393 (464)
T 3v7d_B 348 LQGHTALVGL------LRLS--DKFLVSAAA---------------------DGSIRGWDANDYSRKFSYHHTNL----- 393 (464)
T ss_dssp ECCCSSCEEE------EEEC--SSEEEEEET---------------------TSEEEEEETTTCCEEEEEECTTC-----
T ss_pred EeCCCCcEEE------EEEc--CCEEEEEeC---------------------CCcEEEEECCCCceeeeecCCCC-----
Confidence 3333332222 4444 566665541 23599999998775544432211
Q ss_pred eEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeE
Q 002194 579 TVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (954)
Q Consensus 579 ~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~ 623 (954)
.....|+++++.++... ...+.+|++.+++...
T Consensus 394 -------~~~~~~~~~~~~l~~~~-----dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 394 -------SAITTFYVSDNILVSGS-----ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp -------CCEEEEEECSSEEEEEE-----TTEEEEEETTTCCEEE
T ss_pred -------ccEEEEEeCCCEEEEec-----CCeEEEEECCCCcEEe
Confidence 11246888988666433 2579999998887544
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.09 E-value=4.8e-08 Score=106.50 Aligned_cols=281 Identities=11% Similarity=0.011 Sum_probs=150.3
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccC-CCCceEEEEEECCCCceeecccCCC-c
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDS-SSSKLRVWVADVDTGKARPLFQSPD-I 240 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~-~~~~~~l~~~d~~~g~~~~lt~~~~-~ 240 (954)
+.|+++|..+ .+ .+..++.+... ++.+||||++|+.+........ +.....|.++|+.+++...-...+. .
T Consensus 59 ~~V~ViD~~t----~~--v~~~I~vG~~P-~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~ 131 (386)
T 3sjl_D 59 TQQFVIDGEA----GR--VIGMIDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 131 (386)
T ss_dssp EEEEEEETTT----TE--EEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CEEEEEECCC----Ce--EEEEEECCCCC-cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc
Confidence 4788888743 22 22222233333 4999999999888753110000 0124579999999887644322221 0
Q ss_pred cc--cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEE
Q 002194 241 YL--NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (954)
Q Consensus 241 ~~--~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~ 318 (954)
.. ......+.++|||++++++.. . ....|.+
T Consensus 132 r~~~g~~P~~~a~spDGk~lyVan~---------------------~--------------------------~~~~VsV 164 (386)
T 3sjl_D 132 RFLVGTYPWMTSLTPDGKTLLFYQF---------------------S--------------------------PAPAVGV 164 (386)
T ss_dssp CCCBSCCGGGEEECTTSSEEEEEEC---------------------S--------------------------SSCEEEE
T ss_pred ccccCCCCceEEEcCCCCEEEEEEc---------------------C--------------------------CCCeEEE
Confidence 00 001347899999999997710 0 1234778
Q ss_pred EEe-CCce-eEcCCCc--------cccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcc
Q 002194 319 VSL-DGTV-KEIGPPA--------VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE 388 (954)
Q Consensus 319 ~~~-~G~~-~~l~~~~--------~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~ 388 (954)
+|+ +++. ..+..++ .-.-++.++||+++++...... .+ + +.. +..-...
T Consensus 165 ID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g------------~v-~-~~~-------~~~~~~~ 223 (386)
T 3sjl_D 165 VDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG------------TP-E-ITH-------TEVFHPE 223 (386)
T ss_dssp EETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSS------------CC-E-EEE-------CCCCSCT
T ss_pred EECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCC------------eE-E-Eee-------cceeccc
Confidence 888 6643 3332221 1111367888887666552211 22 1 110 0000011
Q ss_pred cCCccccccccCccceeec-cCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec----------cc-
Q 002194 389 DIPIAFNSVRKGMRSINWR-SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL----------DL- 456 (954)
Q Consensus 389 ~~p~~~~~~~~g~~~~~ws-pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~----------~~- 456 (954)
..++ ...+.|. +||+ ++|. +..+.+++++. .++..+.+... .+
T Consensus 224 ~~~~--------~~~~~~~~~dG~-~~~v-------------s~~g~V~v~d~---~~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 224 DEFL--------INHPAYSQKAGR-LVWP-------------TYTGKIHQIDL---SSGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp TSCB--------CSCCEEETTTTE-EEEE-------------BTTSEEEEEEC---TTSSCEECCCEESSCHHHHHTTEE
T ss_pred cccc--------cccceeEcCCCc-EEEE-------------eCCCEEEEEEC---CCCcceeecceecccccccccccc
Confidence 1111 0124564 6774 4444 22457999995 55544333211 11
Q ss_pred --ccCceeeccCCceEEEEEecc------ccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 457 --RYGGISWCDDSLALVYESWYK------TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 457 --~~~~~~~spDg~~l~~~~~~~------~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
....++++||+++|+.....+ ....+||++|+.+.....++..... .++ +.+|+||+.++|..
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~---~~~------lavs~D~~~~ly~t 349 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE---IDS------INVSQDEKPLLYAL 349 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE---ECE------EEECSSSSCEEEEE
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCC---cce------EEECCCCCeEEEEE
Confidence 223478899999988875421 1236899999999632222222221 222 88999998666654
Q ss_pred eeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccC
Q 002194 529 KKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
.. ....|.++|..+++...-....
T Consensus 350 n~-------------------~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 350 ST-------------------GDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp ET-------------------TTTEEEEEETTTCCEEEEECCC
T ss_pred cC-------------------CCCeEEEEECCCCcEEEEecCC
Confidence 21 1234999999999876655544
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.09 E-value=9.4e-09 Score=112.06 Aligned_cols=236 Identities=10% Similarity=-0.008 Sum_probs=134.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
....++|+|||+ |+++.. ....|++++.++++.+.++...... +..++|+|||++++..... .
T Consensus 46 ~~~~~~~~~~g~-l~~~~~--------~~~~i~~~d~~~~~~~~~~~~~~~~----~~~i~~~~dg~l~v~~~~~-~--- 108 (333)
T 2dg1_A 46 QLEGLNFDRQGQ-LFLLDV--------FEGNIFKINPETKEIKRPFVSHKAN----PAAIKIHKDGRLFVCYLGD-F--- 108 (333)
T ss_dssp CEEEEEECTTSC-EEEEET--------TTCEEEEECTTTCCEEEEEECSSSS----EEEEEECTTSCEEEEECTT-S---
T ss_pred cccCcEECCCCC-EEEEEC--------CCCEEEEEeCCCCcEEEEeeCCCCC----cceEEECCCCcEEEEeCCC-C---
Confidence 457899999998 555431 2468999999998887765322221 6688999999866654100 0
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEc-CC--C-ccccccccCCCCc
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI-GP--P-AVYTSLDPSPDEK 344 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l-~~--~-~~~~~~~~SpDGk 344 (954)
+ ....|++++. ++..+.+ .. . ..+..+.++|||+
T Consensus 109 ----------------------------------~-------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~ 147 (333)
T 2dg1_A 109 ----------------------------------K-------STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG 147 (333)
T ss_dssp ----------------------------------S-------SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC
T ss_pred ----------------------------------C-------CCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC
Confidence 0 1135888888 5555432 21 1 4456789999997
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
.++....... ......|+.++.++++.+.+.... .....++|+|||+.+++. +
T Consensus 148 l~v~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~dg~~l~v~-~------ 200 (333)
T 2dg1_A 148 FYFTDFRGYS-------TNPLGGVYYVSPDFRTVTPIIQNI-------------SVANGIALSTDEKVLWVT-E------ 200 (333)
T ss_dssp EEEEECCCBT-------TBCCEEEEEECTTSCCEEEEEEEE-------------SSEEEEEECTTSSEEEEE-E------
T ss_pred EEEEeccccc-------cCCCceEEEEeCCCCEEEEeecCC-------------CcccceEECCCCCEEEEE-e------
Confidence 5554331100 001236888887766655543210 123568999999866554 1
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEE-----eecc--cccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEE
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEIL-----HKLD--LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l-----~~~~--~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 497 (954)
...+.|++++.+ .++.....+ .... .....+++++||+. +.+...+ ..|++++.++. ....
T Consensus 201 -----~~~~~i~~~d~~-~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~~---~~v~~~d~~g~--~~~~ 268 (333)
T 2dg1_A 201 -----TTANRLHRIALE-DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL-YVAMYGQ---GRVLVFNKRGY--PIGQ 268 (333)
T ss_dssp -----GGGTEEEEEEEC-TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE-EEEEETT---TEEEEECTTSC--EEEE
T ss_pred -----CCCCeEEEEEec-CCCcCcccccceEEEecCCCCCCCceEECCCCCE-EEEEcCC---CEEEEECCCCC--EEEE
Confidence 124578888851 122222221 1111 24456899999973 3333222 35888888542 2222
Q ss_pred EecCCCC------CccCCCCCCCeeeccCCcEEEEEEe
Q 002194 498 LFDRSSE------DVYSDPGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 498 l~~~~~~------~~~~~~~~~~~~~spdG~~l~~~~~ 529 (954)
+ ..... .+.+ ++|+|||+.|++...
T Consensus 269 ~-~~~~~~~g~~~~~~~------~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 269 I-LIPGRDEGHMLRSTH------PQFIPGTNQLIICSN 299 (333)
T ss_dssp E-ECTTGGGTCSCBCCE------EEECTTSCEEEEEEE
T ss_pred E-EcCCCccccccCcce------EEECCCCCEEEEEeC
Confidence 2 22111 1112 788999988877663
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.1e-10 Score=132.82 Aligned_cols=274 Identities=8% Similarity=-0.028 Sum_probs=150.3
Q ss_pred CCCCceecCC------CCEEEEEecCCCCCcccccccc--------------------ceeeeeeecCCCCCCcceeeEe
Q 002194 110 PLPALSFSPQ------RDKILFLKRRALPPLEELARPE--------------------EKLAGLRIDGKCNTRSRMSFYT 163 (954)
Q Consensus 110 ~~~~~~~SPD------G~~laf~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~ 163 (954)
.+..++|||+ |+.||..+.++...++++.... ..+..+.+.+. .....++.++
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~Dg 287 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNG 287 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTS
T ss_pred cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCC
Confidence 4567899997 6799988888666666554321 12234445443 2233334447
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccce--eecCCC-CeEEEEEeeccccCCCCceEEEEEECCCCceee-cccCCC
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFV--TWSQDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP-LFQSPD 239 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~--~wSPDG-~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~ 239 (954)
.|.+|++.. +. .....+..+ ...+..+ .|+||| +.||..+. ...|.++|+.+++... +.....
T Consensus 288 tV~lWD~~~-~~-~~~~~~~~H--~~~V~sv~~~~s~~g~~~laS~S~---------D~tvklWD~~~~~~~~~~~~~~~ 354 (524)
T 2j04_B 288 FVAEFDLTD-PE-VPSFYDQVH--DSYILSVSTAYSDFEDTVVSTVAV---------DGYFYIFNPKDIATTKTTVSRFR 354 (524)
T ss_dssp EEEEEETTB-CS-SCSEEEECS--SSCEEEEEEECCTTSCCEEEEEET---------TSEEEEECGGGHHHHCEEEEECS
T ss_pred EEEEEECCC-CC-CceEEeecc--cccEEEEEEEcCCCCCeEEEEecc---------CCeEEEEECCCCCcccccccccc
Confidence 899999964 20 112234332 2457777 689998 66666542 4567777876654322 111111
Q ss_pred ccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEE
Q 002194 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (954)
Q Consensus 240 ~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~ 319 (954)
. ..+..++|+|||+.|+.+. ....|.++
T Consensus 355 ~---~~v~~v~fsp~~~~l~s~~-------------------------------------------------~d~tv~lw 382 (524)
T 2j04_B 355 G---SNLVPVVYCPQIYSYIYSD-------------------------------------------------GASSLRAV 382 (524)
T ss_dssp C---CSCCCEEEETTTTEEEEEC-------------------------------------------------SSSEEEEE
T ss_pred c---CcccceEeCCCcCeEEEeC-------------------------------------------------CCCcEEEE
Confidence 0 0145789999999877651 11236667
Q ss_pred Ee-CCc-eeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccc
Q 002194 320 SL-DGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNS 396 (954)
Q Consensus 320 ~~-~G~-~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~ 396 (954)
|+ ++. ...+... ..+.+++|||||+.|+..+.+ +.+.+|++.++. +..+..... . .
T Consensus 383 d~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D-------------gtv~lwd~~~~~---~~~~~~~~~-~----~ 441 (524)
T 2j04_B 383 PSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD-------------GSLIITNAARRL---LHGIKNSSA-T----Q 441 (524)
T ss_dssp ETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETT-------------TEEECCBSCSST---TTCC-----------C
T ss_pred ECcccccceeeecCCCceEEEEeCCCCCeEEEEECC-------------CEEEEEechHhh---ccccccCcc-c----e
Confidence 77 554 2444444 778899999999999887743 388899876531 111100000 0 0
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCc---eEEEE
Q 002194 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSL---ALVYE 473 (954)
Q Consensus 397 ~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~---~l~~~ 473 (954)
....+..++|||||+.+.++ + ...++.+.. ++.....+..+...+..++|+||+. .|+.+
T Consensus 442 ~~~~v~~v~~sp~g~~~~~~-------------~-~~~~~~~~~---~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg 504 (524)
T 2j04_B 442 KSLRLWKWDYSIKDDKYRID-------------S-SYEVYPLTV---NDVSKAKIDAHGINITCTKWNETSAGGKCYAFS 504 (524)
T ss_dssp CCCEEEECBCCSSSCEEEEC-------------C-CCCCCC----------------CCCSCCCEEECCSTTTTTEEEEE
T ss_pred eeeEEEEeccCCCCCeEEcc-------------C-Cceeccccc---CCcceeeecCCCceEEEEECCCCCCccHHHHhh
Confidence 00112467899999844322 1 112222221 3444556677778899999999964 56655
Q ss_pred EeccccceEEEEEcCC
Q 002194 474 SWYKTRRTRTWVISPG 489 (954)
Q Consensus 474 ~~~~~~~~~l~~~d~~ 489 (954)
...+ ..+||.++..
T Consensus 505 ~~~g--~vrlw~l~~~ 518 (524)
T 2j04_B 505 NSAG--LLTLEYLSLE 518 (524)
T ss_dssp CTTS--EEEEEECSCC
T ss_pred ccCc--eEEEEEcccc
Confidence 4333 2677776543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-07 Score=107.88 Aligned_cols=314 Identities=11% Similarity=0.024 Sum_probs=177.2
Q ss_pred eecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcccce
Q 002194 115 SFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFV 194 (954)
Q Consensus 115 ~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~ 194 (954)
.+++||++|+..+.+ +.|.+|++.+ + .....+.+ +...+...
T Consensus 124 ~~~~~g~~l~sg~~d---------------------------------g~i~vwd~~~-~--~~~~~~~~--h~~~v~~~ 165 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDD---------------------------------NTLKVWSAVT-G--KCLRTLVG--HTGGVWSS 165 (445)
T ss_dssp EEEEETTEEEEEETT---------------------------------SCEEEEETTT-C--CEEEECCC--CSSCEEEE
T ss_pred EEEEcCCEEEEEECC---------------------------------CcEEEEECCC-C--cEEEEEcC--CCCCEEEE
Confidence 578889999888775 5799999854 2 22233332 22367777
Q ss_pred eecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCC
Q 002194 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (954)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~ 274 (954)
.|+ ++.|+... ....|.++|+++++........... +..+.|+ ++.|+...
T Consensus 166 ~~~--~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~--~~~l~s~s------------ 216 (445)
T 2ovr_B 166 QMR--DNIIISGS---------TDRTLKVWNAETGECIHTLYGHTST----VRCMHLH--EKRVVSGS------------ 216 (445)
T ss_dssp EEE--TTEEEEEE---------TTSCEEEEETTTTEEEEEECCCSSC----EEEEEEE--TTEEEEEE------------
T ss_pred Eec--CCEEEEEe---------CCCeEEEEECCcCcEEEEECCCCCc----EEEEEec--CCEEEEEe------------
Confidence 887 55666644 2457788888887765444333322 5566674 55566541
Q ss_pred CCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-ccccccccCCCCcEEEEEee
Q 002194 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKYILISSI 351 (954)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~-~~~~~~~~SpDGk~l~~~s~ 351 (954)
....|.++|+ +++. ..+... ..+..+.| ||+.|+..+.
T Consensus 217 -------------------------------------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 257 (445)
T 2ovr_B 217 -------------------------------------RDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY 257 (445)
T ss_dssp -------------------------------------TTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET
T ss_pred -------------------------------------CCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC
Confidence 2245777787 6643 333333 55666666 8888888774
Q ss_pred cCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccc
Q 002194 352 HRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVT 430 (954)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~ 430 (954)
+ +.+.+||+.+++. ..+..+. ..+..+.| ||+.++.. +
T Consensus 258 d-------------g~i~iwd~~~~~~~~~~~~~~-------------~~v~~~~~--~~~~l~~~-------------~ 296 (445)
T 2ovr_B 258 D-------------FMVKVWDPETETCLHTLQGHT-------------NRVYSLQF--DGIHVVSG-------------S 296 (445)
T ss_dssp T-------------SCEEEEEGGGTEEEEEECCCS-------------SCEEEEEE--CSSEEEEE-------------E
T ss_pred C-------------CEEEEEECCCCcEeEEecCCC-------------CceEEEEE--CCCEEEEE-------------e
Confidence 3 3899999986543 3333221 23345666 77765554 3
Q ss_pred CCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCC
Q 002194 431 PRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510 (954)
Q Consensus 431 ~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~ 510 (954)
..+.|.+|++ .++.....+..+...+. .++++++.|+..+.++ .|.++|+.++ +...........
T Consensus 297 ~d~~i~i~d~--~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~~dg----~i~vwd~~~~--~~~~~~~~~~~~----- 361 (445)
T 2ovr_B 297 LDTSIRVWDV--ETGNCIHTLTGHQSLTS--GMELKDNILVSGNADS----TVKIWDIKTG--QCLQTLQGPNKH----- 361 (445)
T ss_dssp TTSCEEEEET--TTCCEEEEECCCCSCEE--EEEEETTEEEEEETTS----CEEEEETTTC--CEEEEECSTTSC-----
T ss_pred CCCeEEEEEC--CCCCEEEEEcCCcccEE--EEEEeCCEEEEEeCCC----eEEEEECCCC--cEEEEEccCCCC-----
Confidence 3557899996 23333334444443333 3445677777665443 3555666654 223322221100
Q ss_pred CCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEec-cCcccccceeEEeccCCccc
Q 002194 511 GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE-SDKEKYYETTVALMSDQTEG 589 (954)
Q Consensus 511 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 589 (954)
..+......++++++... ....|++||+.+++...... .........+. ..
T Consensus 362 ~~~v~~~~~~~~~l~s~~---------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~-------~~ 413 (445)
T 2ovr_B 362 QSAVTCLQFNKNFVITSS---------------------DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW-------RI 413 (445)
T ss_dssp SSCEEEEEECSSEEEEEE---------------------TTSEEEEEETTTCCEEEEEEECTTGGGTCEEE-------EE
T ss_pred CCCEEEEEECCCEEEEEe---------------------CCCeEEEEECCCCceeeeeeccccCCCCceEE-------EE
Confidence 111123344566666655 12359999999887654431 11000001111 24
Q ss_pred cccccCCEEEEEEecCCCCceEEEEECCC
Q 002194 590 DLYLNQLKILTSKESKTENTQYYIQSWPD 618 (954)
Q Consensus 590 ~~s~dg~~l~~~~~s~~~p~~l~~~~~~~ 618 (954)
+|+|++..++...........++++|...
T Consensus 414 ~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 414 RASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 68898877666655555577888888654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-08 Score=111.94 Aligned_cols=166 Identities=9% Similarity=0.043 Sum_probs=102.0
Q ss_pred ceEEEEEe-CCc-eeEcCCC--ccccccccCC--CCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCc
Q 002194 314 TQLVLVSL-DGT-VKEIGPP--AVYTSLDPSP--DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLA 387 (954)
Q Consensus 314 ~~l~~~~~-~G~-~~~l~~~--~~~~~~~~Sp--DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~ 387 (954)
..+..+++ +++ .+.+... ..+..++|+| +|++++..+.+ +.+.+||+.+++...+.....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d-------------g~i~~wd~~~~~~~~~~~~~~- 169 (343)
T 3lrv_A 104 NQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNR-------------GTIGFQSYEDDSQYIVHSAKS- 169 (343)
T ss_dssp TEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETT-------------CCEEEEESSSSCEEEEECCCS-
T ss_pred CceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCC-------------CcEEEEECCCCcEEEEEecCC-
Confidence 34556676 554 3333322 5678899999 99999988743 389999999766543332111
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEee-cccccCceeecc
Q 002194 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHK-LDLRYGGISWCD 465 (954)
Q Consensus 388 ~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~-~~~~~~~~~~sp 465 (954)
...+..++|+|||+.++.. +..+.|.+|++ .++... ..+.. +...+..++|+|
T Consensus 170 ----------~~~i~~~~~~pdg~~lasg-------------~~dg~i~iwd~--~~~~~~~~~~~~~h~~~v~~l~fs~ 224 (343)
T 3lrv_A 170 ----------DVEYSSGVLHKDSLLLALY-------------SPDGILDVYNL--SSPDQASSRFPVDEEAKIKEVKFAD 224 (343)
T ss_dssp ----------SCCCCEEEECTTSCEEEEE-------------CTTSCEEEEES--SCTTSCCEECCCCTTSCEEEEEECT
T ss_pred ----------CCceEEEEECCCCCEEEEE-------------cCCCEEEEEEC--CCCCCCccEEeccCCCCEEEEEEeC
Confidence 1235678999999866554 34568999996 333333 45555 677888999999
Q ss_pred CCceEEEEEeccccceEEEEEcCCCCCCCcEEEec--CCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD--RSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
||+.|+..+ ++ ..+| +|+..+. ....+.. .+...+. ...++|+|+|++|+...
T Consensus 225 ~g~~l~s~~-~~--~v~i--wd~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~g~~l~~~s 279 (343)
T 3lrv_A 225 NGYWMVVEC-DQ--TVVC--FDLRKDV-GTLAYPTYTIPEFKTG----TVTYDIDDSGKNMIAYS 279 (343)
T ss_dssp TSSEEEEEE-SS--BEEE--EETTSST-TCBSSCCCBC-----C----CEEEEECTTSSEEEEEE
T ss_pred CCCEEEEEe-CC--eEEE--EEcCCCC-cceeeccccccccccc----ceEEEECCCCCEEEEec
Confidence 999999887 32 2444 4555431 1111110 0000000 01278999999998765
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-08 Score=107.92 Aligned_cols=246 Identities=10% Similarity=-0.013 Sum_probs=144.1
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
....|+|+|||+.|+++.. ....|++++.+++ .+.+...... +..++++|||++++...
T Consensus 29 ~~eg~~~d~~g~~l~~~~~--------~~~~i~~~~~~~~-~~~~~~~~~~-----~~~l~~~~dg~l~v~~~------- 87 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDV--------RQNRTWAWSDDGQ-LSPEMHPSHH-----QNGHCLNKQGHLIACSH------- 87 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEG--------GGTEEEEEETTSC-EEEEESSCSS-----EEEEEECTTCCEEEEET-------
T ss_pred cccCCeEeCCCCEEEEEeC--------CCCEEEEEECCCC-eEEEECCCCC-----cceeeECCCCcEEEEec-------
Confidence 4567999999998888653 2468999999988 5555432221 55788999999665430
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC------ccccccccCCC
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP------AVYTSLDPSPD 342 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~------~~~~~~~~SpD 342 (954)
+...|++++. +|+.+.+... .....++++||
T Consensus 88 ------------------------------------------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~ 125 (296)
T 3e5z_A 88 ------------------------------------------GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPD 125 (296)
T ss_dssp ------------------------------------------TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTT
T ss_pred ------------------------------------------CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCC
Confidence 2245888888 7876655332 23457899999
Q ss_pred CcEEEEEeecCC---cc-cccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002194 343 EKYILISSIHRP---YS-FIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (954)
Q Consensus 343 Gk~l~~~s~~~~---~~-~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~ 418 (954)
|+.++..+.... .. ...........|+.++.+ +..+.+.... ..+..++|+|||+.+ +. +
T Consensus 126 G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~-------------~~~~gi~~s~dg~~l-v~-~ 189 (296)
T 3e5z_A 126 GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDR-------------VKPNGLAFLPSGNLL-VS-D 189 (296)
T ss_dssp SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCC-------------SSEEEEEECTTSCEE-EE-E
T ss_pred CCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCC-------------CCCccEEECCCCCEE-EE-e
Confidence 985543221000 00 000000012367777766 4444433211 223568999999976 43 1
Q ss_pred eccCCCccccccCCCeEEEEecCCCCCCCc----eEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCC
Q 002194 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGP----EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVA 494 (954)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~----~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~ 494 (954)
...+.|+++++ ...++. +.+......+.++++++||+ |+.+. . ..|++++.++.
T Consensus 190 -----------~~~~~i~~~~~--~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~---~~v~~~~~~g~--- 247 (296)
T 3e5z_A 190 -----------TGDNATHRYCL--NARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--G---DGVHVLTPDGD--- 247 (296)
T ss_dssp -----------TTTTEEEEEEE--CSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--T---TEEEEECTTSC---
T ss_pred -----------CCCCeEEEEEE--CCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--C---CeEEEECCCCC---
Confidence 22457889886 223333 22211233456799999997 44443 2 35889998752
Q ss_pred cEEEecCCCCCccCCCCCCCeee-ccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeE
Q 002194 495 PRILFDRSSEDVYSDPGSPMMRR-TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (954)
Q Consensus 495 ~~~l~~~~~~~~~~~~~~~~~~~-spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 565 (954)
.......+.. +.. +.| +|||+.|+.... ..|+.+++++++.+
T Consensus 248 ~~~~~~~~~~-~~~------~~f~~~d~~~L~v~t~----------------------~~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 248 ELGRVLTPQT-TSN------LCFGGPEGRTLYMTVS----------------------TEFWSIETNVRGLE 290 (296)
T ss_dssp EEEEEECSSC-CCE------EEEESTTSCEEEEEET----------------------TEEEEEECSCCBCC
T ss_pred EEEEEECCCC-cee------EEEECCCCCEEEEEcC----------------------CeEEEEEccccccc
Confidence 2222222211 222 677 688888877651 24999999877654
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-10 Score=132.01 Aligned_cols=211 Identities=15% Similarity=0.050 Sum_probs=129.2
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHH-HHCCcEEEEcCCC-CC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW-LARGFAILGGPTT-PI 723 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~G~~V~~~~~~-~~ 723 (954)
+.|. +...+|.|++.... .++|+||++|||.+..+.. ..+.. ..... ..+|++|+..+|+ +.
T Consensus 82 ~edc--l~l~v~~P~~~~~~--~~~Pviv~iHGGg~~~g~~--------~~~~~----~~~~~~~~~g~vvv~~nYRlg~ 145 (522)
T 1ukc_A 82 SEDC--LFINVFKPSTATSQ--SKLPVWLFIQGGGYAENSN--------ANYNG----TQVIQASDDVIVFVTFNYRVGA 145 (522)
T ss_dssp ESCC--CEEEEEEETTCCTT--CCEEEEEEECCSTTTSCCS--------CSCCC----HHHHHHTTSCCEEEEECCCCHH
T ss_pred CCcC--CEEEEEECCCCCCC--CCCCEEEEECCCccccCCc--------cccCc----HHHHHhcCCcEEEEEecccccc
Confidence 3455 55678889764332 3489999999997654421 12211 11111 2469999998886 33
Q ss_pred CCCCCcccch--hhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhC----CCcccEEEEeccCC
Q 002194 724 IGEGDEEAND--RFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHA----PHLFCCGIARSGAY 794 (954)
Q Consensus 724 ~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~----p~~~~a~v~~~~~~ 794 (954)
.|++...... ..+...+.|+.+|++|++++. ..|+++|.|+|+|+||+++..++... +.+|+++|+.+|.+
T Consensus 146 ~Gf~~~~~~~~~~~~n~gl~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~ 225 (522)
T 1ukc_A 146 LGFLASEKVRQNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFW 225 (522)
T ss_dssp HHHCCCHHHHHSSCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCC
T ss_pred cccccchhccccCCCChhHHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCc
Confidence 3554432211 123567899999999998862 47999999999999999888777653 57899999999875
Q ss_pred CCCCCCCCCccccchhhh-------------cHHHHHhcCccc---------ccCCCCCC--EEEEEeCCCCCCCCchHH
Q 002194 795 NRTLTPFGFQNEDRTLWE-------------ATSTYVEMSPFM---------SANKLKKP--ILLVHGEEDNNSGTLTMQ 850 (954)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~sp~~---------~~~~~~~P--~Lii~G~~D~~v~~~~~~ 850 (954)
...... ......+. ..+.+...++.. .......| .+.++...|..+. +++
T Consensus 226 ~~~~~~----~~~~~~~~~~~~~~gc~~~~~~~~~Lr~~~~~~l~~a~~~~~~~~~~~~~~~~~~f~Pv~D~~~l--~~~ 299 (522)
T 1ukc_A 226 PTQRTV----SEMEFQFERFVNDTGCSSARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLV--PDE 299 (522)
T ss_dssp CCCCCS----GGGHHHHHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHSSCCCCTTCCSSSCCSCCSCCCCCSSSS--CSC
T ss_pred CCcCCH----HHHHHHHHHHHHHcCCCCHHHHHHHHHcCCHHHHHHHHHhccccccccCcccccccccccCCccc--CCC
Confidence 422111 00000000 011112211111 11112234 5566777787765 677
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 002194 851 SDRFFNALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
..+++++-+..++++-+-...+++|.+.
T Consensus 300 p~~~~~~g~~~~vp~l~G~~~~Eg~~f~ 327 (522)
T 1ukc_A 300 LYNAFDAGNFIKVPVLVGDDTDEGSNFA 327 (522)
T ss_dssp HHHHHHHTCSCCCCEEEEEETBGGGGTS
T ss_pred HHHHHhcCCCCCCCEEEEeecchhHHhh
Confidence 7777776666677777777889999875
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-08 Score=110.14 Aligned_cols=269 Identities=12% Similarity=0.085 Sum_probs=141.6
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCC-----
Q 002194 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD----- 187 (954)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~----- 187 (954)
.+++||||++|..... +.+.. .+....+.|.++|..+ + .....|. .+.
T Consensus 82 ~va~spDG~~lyVan~--------------------~~~r~---~~G~~~~~VsviD~~t-~--~v~~~I~-v~~g~r~~ 134 (386)
T 3sjl_D 82 NPVVADDGSFIAHAST--------------------VFSRI---ARGERTDYVEVFDPVT-L--LPTADIE-LPDAPRFL 134 (386)
T ss_dssp EEEECTTSSCEEEEEE--------------------EEEET---TEEEEEEEEEEECTTT-C--CEEEEEE-ETTCCCCC
T ss_pred cEEECCCCCEEEEEcc--------------------ccccc---ccCCCCCEEEEEECCC-C--eEEEEEE-CCCccccc
Confidence 5999999999876643 00000 0011114578887743 1 1122232 111
Q ss_pred -CCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc--cccc-cceeEecCCeEEEEEec
Q 002194 188 -GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL--NAIF-DNFVWVNNSTLLVCTIP 263 (954)
Q Consensus 188 -~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~--~~~~-~~~~wspDG~~l~~~~~ 263 (954)
+.......+||||++|+.... .....|.++|+.+++...-...++... .... ..+..++||+++++...
T Consensus 135 ~g~~P~~~a~spDGk~lyVan~-------~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~ 207 (386)
T 3sjl_D 135 VGTYPWMTSLTPDGKTLLFYQF-------SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFG 207 (386)
T ss_dssp BSCCGGGEEECTTSSEEEEEEC-------SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred cCCCCceEEEcCCCCEEEEEEc-------CCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECC
Confidence 225667899999999887642 225689999999987654433332100 0000 12356677777666511
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC--cccccccc-
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDP- 339 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~--~~~~~~~~- 339 (954)
.. ..+ .+. + ..+... .....+.|
T Consensus 208 ~~------------------------------------------------g~v--~~~~~---~~~~~~~~~~~~~~~~~ 234 (386)
T 3sjl_D 208 TE------------------------------------------------GTP--EITHT---EVFHPEDEFLINHPAYS 234 (386)
T ss_dssp SS------------------------------------------------SCC--EEEEC---CCCSCTTSCBCSCCEEE
T ss_pred CC------------------------------------------------CeE--EEeec---ceeccccccccccceeE
Confidence 00 001 000 1 001111 11223455
Q ss_pred CCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 340 SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
.+||+ ++|.+. .+++++.|+.+...+.+............-.....+...++++||++++++....
T Consensus 235 ~~dG~-~~~vs~-------------~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~ 300 (386)
T 3sjl_D 235 QKAGR-LVWPTY-------------TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 300 (386)
T ss_dssp TTTTE-EEEEBT-------------TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred cCCCc-EEEEeC-------------CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecc
Confidence 47885 555653 2389999998765433322210000000000112344567889999987776432
Q ss_pred ccCCCccccccCCCeEEEEecCCCCCCCc-eEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
...+. .-...+.|+++|+ .+.+. +.+. ......++++|+||+.++|..+... ..|.++|..++
T Consensus 301 ~~~~~---hk~~~~~V~viD~---~t~kv~~~i~-vg~~~~~lavs~D~~~~ly~tn~~~--~~VsViD~~t~ 364 (386)
T 3sjl_D 301 RDEWR---HKTASRFVVVLDA---KTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGD--KTLYIHDAESG 364 (386)
T ss_dssp CCTTC---TTSCEEEEEEEET---TTCCEEEEEE-EEEEECEEEECSSSSCEEEEEETTT--TEEEEEETTTC
T ss_pred ccccc---cCCCCCEEEEEEC---CCCeEEEEEE-CCCCcceEEECCCCCeEEEEEcCCC--CeEEEEECCCC
Confidence 21110 0022358999996 44444 3333 2335678999999987777766543 46899999886
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.1e-09 Score=114.24 Aligned_cols=113 Identities=12% Similarity=0.195 Sum_probs=78.0
Q ss_pred CcccceeecCC---CCeEEEEEeeccccCCCCceEEEEEECCC-Ccee--ecccCCCccccccccceeEecCCeEEEEEe
Q 002194 189 AKLNFVTWSQD---GKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKAR--PLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (954)
Q Consensus 189 ~~~~~~~wSPD---G~~iaf~~~~~~~~~~~~~~~l~~~d~~~-g~~~--~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (954)
..+..++|+|| |+.|+... . ...|.++++++ +... .+...... +..+.|+|||+.|+...
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~-------~--dg~i~iw~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGS-------W--ANDVRCWEVQDSGQTIPKAQQMHTGP-----VLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEE-------T--TSEEEEEEECTTSCEEEEEEEECSSC-----EEEEEECTTSSEEEEEE
T ss_pred CceEEEEEcCCCCCceEEEEEC-------C--CCcEEEEEcCCCCceeEEEeccccCC-----EEEEEECcCCCEEEEEc
Confidence 47899999999 58777754 2 34566666665 3332 23222222 77899999999998761
Q ss_pred cCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-cccccccc-
Q 002194 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDP- 339 (954)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~- 339 (954)
....|.++++ +++...+... ..+..+.|
T Consensus 106 -------------------------------------------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~ 136 (368)
T 3mmy_A 106 -------------------------------------------------CDKTAKMWDLSSNQAIQIAQHDAPVKTIHWI 136 (368)
T ss_dssp -------------------------------------------------TTSEEEEEETTTTEEEEEEECSSCEEEEEEE
T ss_pred -------------------------------------------------CCCcEEEEEcCCCCceeeccccCceEEEEEE
Confidence 1235777788 7765555444 77888999
Q ss_pred -CCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce
Q 002194 340 -SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF 377 (954)
Q Consensus 340 -SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~ 377 (954)
+|||+.|+..+.+ +.+.+||+..++
T Consensus 137 ~~~~~~~l~~~~~d-------------g~i~vwd~~~~~ 162 (368)
T 3mmy_A 137 KAPNYSCVMTGSWD-------------KTLKFWDTRSSN 162 (368)
T ss_dssp ECSSCEEEEEEETT-------------SEEEEECSSCSS
T ss_pred eCCCCCEEEEccCC-------------CcEEEEECCCCc
Confidence 9999999888743 389999998543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-08 Score=110.62 Aligned_cols=274 Identities=11% Similarity=0.017 Sum_probs=146.7
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccc-cCCCCceEEEEEECCCCceeecccCC-Ccc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAE-DSSSSKLRVWVADVDTGKARPLFQSP-DIY 241 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~-~~~~~~~~l~~~d~~~g~~~~lt~~~-~~~ 241 (954)
.|.++|+.+ .+ .+..++.+... .+.+||||++|+.+...... ..+.....|.++|+.+++...-...+ ...
T Consensus 100 ~VsVID~~t----~~--vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r 172 (426)
T 3c75_H 100 QQFVIDGST----GR--ILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR 172 (426)
T ss_dssp EEEEEETTT----TE--EEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred eEEEEECCC----CE--EEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc
Confidence 688888743 22 22223333344 89999999998887631100 00112468999999988765432222 000
Q ss_pred c--cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEE
Q 002194 242 L--NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (954)
Q Consensus 242 ~--~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~ 319 (954)
+ ......+.++|||+++|++.. . ....|.++
T Consensus 173 ~~~g~~P~~~~~spDGk~lyV~n~---------------------~--------------------------~~~~VsVI 205 (426)
T 3c75_H 173 FLVGTYQWMNALTPDNKNLLFYQF---------------------S--------------------------PAPAVGVV 205 (426)
T ss_dssp CCBSCCGGGSEECTTSSEEEEEEC---------------------S--------------------------SSCEEEEE
T ss_pred cccCCCcceEEEcCCCCEEEEEec---------------------C--------------------------CCCeEEEE
Confidence 0 001347899999999998710 0 12357788
Q ss_pred Ee-CCce-eEcCCCcc--------ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEE-Eec-cCCCc
Q 002194 320 SL-DGTV-KEIGPPAV--------YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELC-DLPLA 387 (954)
Q Consensus 320 ~~-~G~~-~~l~~~~~--------~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~-~l~-~~~~~ 387 (954)
|+ +++. ..+.-++. ..-+++++||+.+++.. ..+++. ..+ ....
T Consensus 206 D~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~-----------------------~~~~v~~~~~~~~~v- 261 (426)
T 3c75_H 206 DLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDF-----------------------ADGETKVTNTEVFHT- 261 (426)
T ss_dssp ETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEEC-----------------------CTTCCEEEECCCCSC-
T ss_pred ECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEEC-----------------------CCCcEEEEeeeeecc-
Confidence 88 6643 33332211 01134455555444433 211111 111 0000
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-------------
Q 002194 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL------------- 454 (954)
Q Consensus 388 ~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~------------- 454 (954)
...|. ...+.|++||+.++|. ...+.++++|. .++....+...
T Consensus 262 ~~~p~--------~~~~~~~~dg~~~~~~-------------s~~g~V~ViD~---~~~~~~v~~~~~~~~~~~i~~g~~ 317 (426)
T 3c75_H 262 EDELL--------INHPAFSLRSGRLVWP-------------TYTGKIFQADL---TAEGATFRAPIEALTEAERADDWR 317 (426)
T ss_dssp TTSCB--------CSCCEECTTTCEEEEE-------------BTTSEEEEEEE---CSSCEEECCCEESSCTTTGGGTEE
T ss_pred CCCce--------eeEeeecCCCCEEEEE-------------eCCCcEEEEec---cCCceEEeeeeeeccccccccccc
Confidence 00111 1235689999887776 22347888885 44433322110
Q ss_pred ccccCceeeccCCceEEEEEecc------ccceEEEEEcCCCCCCCcEEE-ecCCCCCccCCCCCCCeeeccCCcEEEEE
Q 002194 455 DLRYGGISWCDDSLALVYESWYK------TRRTRTWVISPGSKDVAPRIL-FDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (954)
Q Consensus 455 ~~~~~~~~~spDg~~l~~~~~~~------~~~~~l~~~d~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 527 (954)
......++++|||++++...... .....|+++|+.+... ...+ .... ..+ +.|+|||+.++|.
T Consensus 318 p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv-v~~I~vg~~---P~g------ia~spDg~~~lyv 387 (426)
T 3c75_H 318 PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER-INKIELGHE---IDS------INVSQDAEPLLYA 387 (426)
T ss_dssp ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-EEEEEEEEE---ECE------EEECCSSSCEEEE
T ss_pred cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE-EEEEECCCC---cCe------EEEccCCCEEEEE
Confidence 11122378999999887764321 1135799999998631 1112 1111 112 7899999955555
Q ss_pred EeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEe
Q 002194 528 IKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (954)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 568 (954)
.+. ....|.++|+++++...-.
T Consensus 388 ~n~-------------------~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 388 LSA-------------------GTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EET-------------------TTTEEEEEETTTCCEEEEE
T ss_pred EcC-------------------CCCeEEEEECCCCCEEEEe
Confidence 521 1235999999999876443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=9.9e-09 Score=111.61 Aligned_cols=233 Identities=12% Similarity=0.046 Sum_probs=140.8
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002194 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (954)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~ 192 (954)
.+.|+||++.++++... . ..|++++..+ +..+.+. .+ ..+.
T Consensus 53 gp~~~~~~~~l~~~d~~----------------------~----------~~i~~~d~~~----~~~~~~~-~~--~~v~ 93 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNIL----------------------E----------RELHELHLAS----GRKTVHA-LP--FMGS 93 (326)
T ss_dssp EEEEETTTTEEEEEEGG----------------------G----------TEEEEEETTT----TEEEEEE-CS--SCEE
T ss_pred CCeEeCCCCEEEEEECC----------------------C----------CEEEEEECCC----CcEEEEE-CC--Ccce
Confidence 68999999888887542 0 3688888743 4433333 22 3577
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCC
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (954)
.+.|+|||+.++.. ...|+++|.++++.+.+...........+..+.++|||++.+..... .
T Consensus 94 ~i~~~~dg~l~v~~-----------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~-~------ 155 (326)
T 2ghs_A 94 ALAKISDSKQLIAS-----------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGR-K------ 155 (326)
T ss_dssp EEEEEETTEEEEEE-----------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEET-T------
T ss_pred EEEEeCCCeEEEEE-----------CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCC-c------
Confidence 78999999866553 12499999998887766543221101125578899999854432100 0
Q ss_pred CCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-ccccccccCCCCcEEEEEee
Q 002194 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISSI 351 (954)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~ 351 (954)
. + .....||+++ +|+.+.+... .....++|||||+.|++...
T Consensus 156 -----------------------------~-~------~~~~~l~~~~-~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 156 -----------------------------A-E------TGAGSIYHVA-KGKVTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp -----------------------------C-C------TTCEEEEEEE-TTEEEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred -----------------------------C-C------CCceEEEEEe-CCcEEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 0 0 0234688888 7876665443 44567899999999988753
Q ss_pred cCCcccccccCCCCcceEEEecc--Cc-eE---EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 352 HRPYSFIVPCGRFPRQVGVWTTD--GI-FV---RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~l~d~~--g~-~~---~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
. ...|++++++ ++ .. +.+...... ...+..+.+.+||. +++. ..
T Consensus 199 ~------------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~----------~~~p~gi~~d~~G~-lwva-~~------ 248 (326)
T 2ghs_A 199 K------------VNRLMRVPLDARTGLPTGKAEVFIDSTGI----------KGGMDGSVCDAEGH-IWNA-RW------ 248 (326)
T ss_dssp T------------TCEEEEEEBCTTTCCBSSCCEEEEECTTS----------SSEEEEEEECTTSC-EEEE-EE------
T ss_pred C------------CCEEEEEEcccccCCcccCceEEEECCCC----------CCCCCeeEECCCCC-EEEE-Ee------
Confidence 2 2378999975 33 21 122111100 01234678888885 2222 11
Q ss_pred cccccCCCeEEEEecCCCCCCCceEEeecccccCceeec-cCCceEEEEEecc
Q 002194 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWC-DDSLALVYESWYK 477 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~s-pDg~~l~~~~~~~ 477 (954)
..+.|++++. ++...+.+......+..++|+ ||++.|++.....
T Consensus 249 -----~~~~v~~~d~---~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 249 -----GEGAVDRYDT---DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp -----TTTEEEEECT---TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred -----CCCEEEEECC---CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 1347888884 554444554444456788998 8998887776543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-09 Score=118.52 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=36.8
Q ss_pred CCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEE
Q 002194 431 PRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 431 ~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (954)
..+.|++|++ ..+.....+..+...+..++|||||+.|+.++..+ ..||++
T Consensus 337 ~Dg~V~lwd~--~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G---v~lvrL 387 (393)
T 4gq1_A 337 QHGLIQLINT--YEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS---VLLTRL 387 (393)
T ss_dssp TTTEEEEEET--TCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE---EEEEEE
T ss_pred CCCEEEEEEC--CCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEE
Confidence 3568999996 34445556667777889999999999999886432 445544
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.3e-09 Score=109.39 Aligned_cols=145 Identities=10% Similarity=0.073 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-----CCcccEEEEeccCCCCCCCCCCCccccchh
Q 002194 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-----PHLFCCGIARSGAYNRTLTPFGFQNEDRTL 810 (954)
Q Consensus 736 ~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 810 (954)
.....+++.+++++|.++..+ +++.++||||||.++..++.++ +++++.+|++++.++....... .....
T Consensus 77 ~~~~a~~l~~~~~~l~~~~~~--~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~~~~---~~~~~ 151 (250)
T 3lp5_A 77 IDKQAVWLNTAFKALVKTYHF--NHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMESTSTT---AKTSM 151 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC--SEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCCCSS---CCCHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC--CCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCccccccc---ccCHH
Confidence 456678899999999887433 6899999999999999998876 6789999999887653321110 00011
Q ss_pred hhcHHHHHhcCcccccCCCCCCEEEEEeC----CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC--CCCCcCCCcccHH
Q 002194 811 WEATSTYVEMSPFMSANKLKKPILLVHGE----EDNNSGTLTMQSDRFFNALKGHGALCRLVILP--FESHGYAARESIM 884 (954)
Q Consensus 811 ~~~~~~~~~~sp~~~~~~~~~P~Lii~G~----~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~--~~~H~~~~~~~~~ 884 (954)
+ ..+... ...+.+ ++|+|+|+|+ .|..|| ...++.+...++......+.+.+. +++|... .++ .
T Consensus 152 ~---~~l~~~--~~~lp~-~vpvl~I~G~~~~~~Dg~Vp--~~sa~~l~~l~~~~~~~~~~~~v~g~~a~H~~l-~e~-~ 221 (250)
T 3lp5_A 152 F---KELYRY--RTGLPE-SLTVYSIAGTENYTSDGTVP--YNSVNYGKYIFQDQVKHFTEITVTGANTAHSDL-PQN-K 221 (250)
T ss_dssp H---HHHHHT--GGGSCT-TCEEEEEECCCCCCTTTBCC--HHHHTTHHHHHTTTSSEEEEEECTTTTBSSCCH-HHH-H
T ss_pred H---HHHHhc--cccCCC-CceEEEEEecCCCCCCceee--HHHHHHHHHHhcccccceEEEEEeCCCCchhcc-hhC-H
Confidence 1 111111 111222 6899999999 999998 887777766665544445555555 4669874 333 3
Q ss_pred HHHHHHHHHHH
Q 002194 885 HVLWETDRWLQ 895 (954)
Q Consensus 885 ~~~~~i~~fl~ 895 (954)
.+.+.|.+||.
T Consensus 222 ~v~~~I~~FL~ 232 (250)
T 3lp5_A 222 QIVSLIRQYLL 232 (250)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHHh
Confidence 56666666664
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.4e-09 Score=112.73 Aligned_cols=197 Identities=12% Similarity=0.090 Sum_probs=111.1
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~ 749 (954)
.|.||++||+.... ..|.. +.. ++.+|.|+..+. .|++.+...........+|+.+.++.
T Consensus 21 ~~~lv~lhg~~~~~-----------~~~~~----~~~--l~~~~~v~~~d~---~G~~~~~~~~~~~~~~~~~~~~~i~~ 80 (265)
T 3ils_A 21 RKTLFMLPDGGGSA-----------FSYAS----LPR--LKSDTAVVGLNC---PYARDPENMNCTHGAMIESFCNEIRR 80 (265)
T ss_dssp SEEEEEECCTTCCG-----------GGGTT----SCC--CSSSEEEEEEEC---TTTTCGGGCCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCH-----------HHHHH----HHh--cCCCCEEEEEEC---CCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 57889999974221 11221 122 367899999444 45554444333456666666666655
Q ss_pred HHHcCCCCCCcEEEEeeChHHHHHHHHHH---hCCCcccEEEEeccCCCCCCCCC--------------CC-------cc
Q 002194 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLA---HAPHLFCCGIARSGAYNRTLTPF--------------GF-------QN 805 (954)
Q Consensus 750 l~~~~~~d~~ri~l~G~S~GG~~a~~~a~---~~p~~~~a~v~~~~~~~~~~~~~--------------~~-------~~ 805 (954)
+. ...++.++||||||.+|+.++. ..|++++++|.+++......... +. ..
T Consensus 81 ~~-----~~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (265)
T 3ils_A 81 RQ-----PRGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAPIPQAMEQLPRAFYEHCNSIGLFATQPGASPDGS 155 (265)
T ss_dssp HC-----SSCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCSSCCCCCCCHHHHHHHHHTTTTTTSSSSCSSSC
T ss_pred hC-----CCCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCCCCCcccccCHHHHHHHHHHHHhCCCccccccCC
Confidence 42 2248999999999999999998 67788999998876432111110 00 00
Q ss_pred ccchhh------hcHHHHHhcCcccccCCCCCCEE-EEEeCC---CCCCCC------------chHHHHHHHHHHHhCCC
Q 002194 806 EDRTLW------EATSTYVEMSPFMSANKLKKPIL-LVHGEE---DNNSGT------------LTMQSDRFFNALKGHGA 863 (954)
Q Consensus 806 ~~~~~~------~~~~~~~~~sp~~~~~~~~~P~L-ii~G~~---D~~v~~------------~~~~~~~~~~~l~~~g~ 863 (954)
.....+ .+......+.+ ....++++|++ +++|++ |..++. .......+.+.+ .+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~P~~lii~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~w~~~~--~~~ 232 (265)
T 3ils_A 156 TEPPSYLIPHFTAVVDVMLDYKL-APLHARRMPKVGIVWAADTVMDERDAPKMKGMHFMIQKRTEFGPDGWDTIM--PGA 232 (265)
T ss_dssp SCCCTTHHHHHHHHHHHTTTCCC-CCCCCSSCCEEEEEEEEECSSCTTTSCCCSSCCTTTSCCCCCSCTTHHHHS--TTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCCccCCCCeEEEEEccCCCCccccCccccCcchhhccccccCcchHHHhC--Ccc
Confidence 000000 00011111111 12346789987 999999 988720 022223332222 124
Q ss_pred cEEEEEeCCCCCcCCC-cccHHHHHHHHHHHH
Q 002194 864 LCRLVILPFESHGYAA-RESIMHVLWETDRWL 894 (954)
Q Consensus 864 ~~~~~~~~~~~H~~~~-~~~~~~~~~~i~~fl 894 (954)
++++++++|+||.+.. .+....+.+.|.+||
T Consensus 233 ~~~~~~i~gagH~~~~~~e~~~~v~~~i~~fL 264 (265)
T 3ils_A 233 SFDIVRADGANHFTLMQKEHVSIISDLIDRVM 264 (265)
T ss_dssp CEEEEEEEEEETTGGGSTTTTHHHHHHHHHHT
T ss_pred ceeEEEcCCCCcceeeChhhHHHHHHHHHHHh
Confidence 6899999999998641 344555555555554
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-08 Score=108.46 Aligned_cols=252 Identities=10% Similarity=0.018 Sum_probs=144.9
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
...+.|+|||+.|+|+... . ..|+.|+. +| ..+.+.. ....
T Consensus 47 ~egp~~~~~g~~l~~~d~~----------------------~----------~~i~~~~~--~g---~~~~~~~--~~~~ 87 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLV----------------------G----------RRVLGWRE--DG---TVDVLLD--ATAF 87 (305)
T ss_dssp EEEEEEEGGGTEEEEEETT----------------------T----------TEEEEEET--TS---CEEEEEE--SCSC
T ss_pred ccCCeEeCCCCEEEEEECC----------------------C----------CEEEEEeC--CC---CEEEEeC--CCCc
Confidence 3478999999999888652 1 25777775 33 3333432 1235
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
...+.|+|||+.++. . .+...|++++.+ |+.+.+...........+..++++|||+ |+++-+. .+.
T Consensus 88 ~~gl~~d~dG~l~v~-~--------~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~-~g~-- 153 (305)
T 3dr2_A 88 TNGNAVDAQQRLVHC-E--------HGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPP-FGL-- 153 (305)
T ss_dssp EEEEEECTTSCEEEE-E--------TTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCS-GGG--
T ss_pred cceeeECCCCCEEEE-E--------CCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcC-CCc--
Confidence 677899999985444 2 124589999987 5555554321111111245789999997 4443100 000
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccc-cccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEE
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDED-LFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~-~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~ 347 (954)
.....+. ...-.....||+++. +|+.+.+. . .....++|||||+.|+
T Consensus 154 -----------------------------~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~ly 203 (305)
T 3dr2_A 154 -----------------------------RKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLY 203 (305)
T ss_dssp -----------------------------SCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEE
T ss_pred -----------------------------cccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEE
Confidence 0000000 000002356999998 78777666 5 4556789999999988
Q ss_pred EEeecCCcccccccCCCCcceEEEeccCceEE---EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR---ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~---~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
+...... ......|++++++++... .+.... ...+..+.+.+||+ | +.
T Consensus 204 v~~~~~~-------~~~~~~i~~~~~~~~~l~~~~~~~~~~------------~~~pdgi~~d~~G~-l-wv-------- 254 (305)
T 3dr2_A 204 VSQTPEQ-------GHGSVEITAFAWRDGALHDRRHFASVP------------DGLPDGFCVDRGGW-L-WS-------- 254 (305)
T ss_dssp EEECCC----------CCCEEEEEEEETTEEEEEEEEECCS------------SSCCCSEEECTTSC-E-EE--------
T ss_pred EEecCCc-------CCCCCEEEEEEecCCCccCCeEEEECC------------CCCCCeEEECCCCC-E-EE--------
Confidence 7763310 001237899998854321 111110 02234688999997 2 32
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
...+.|++++. ++.....+.... .+..++|+||++.|+.++.. .||.+++
T Consensus 255 -----~~~~gv~~~~~---~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~-----~l~~~~~ 304 (305)
T 3dr2_A 255 -----SSGTGVCVFDS---DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGP-----CLWMLPL 304 (305)
T ss_dssp -----CCSSEEEEECT---TSCEEEEEECSS-CCCEEEECTTSCEEEEEETT-----EEEEEEC
T ss_pred -----ecCCcEEEECC---CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCC-----eEEEEEC
Confidence 11335888884 555444554333 47789999999988887542 4777654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.00 E-value=2.7e-08 Score=106.61 Aligned_cols=239 Identities=13% Similarity=0.024 Sum_probs=141.1
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002194 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (954)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~ 192 (954)
.+.|+|+++.|.++... . ..|+.++..+ +..+.+. . ...+.
T Consensus 17 gp~w~~~~~~l~~~d~~----------------------~----------~~i~~~d~~~----~~~~~~~-~--~~~~~ 57 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIP----------------------A----------KKVCRWDSFT----KQVQRVT-M--DAPVS 57 (297)
T ss_dssp EEEEETTTTEEEEEETT----------------------T----------TEEEEEETTT----CCEEEEE-C--SSCEE
T ss_pred CCeEECCCCEEEEEECC----------------------C----------CEEEEEECCC----CcEEEEe-C--CCceE
Confidence 68999998888887542 0 3678888743 3333332 2 23577
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCC
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (954)
.++|+|||+ |+... ...|+++|.++++.+.+.......-...+..++++|||++.+.........
T Consensus 58 ~i~~~~dG~-l~v~~----------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~---- 122 (297)
T 3g4e_A 58 SVALRQSGG-YVATI----------GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAP---- 122 (297)
T ss_dssp EEEEBTTSS-EEEEE----------TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBT----
T ss_pred EEEECCCCC-EEEEE----------CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCccccc----
Confidence 889999999 43332 347999999988877665432211111245788999998444331100000
Q ss_pred CCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-ccccccccCCCCcEEEEEee
Q 002194 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISSI 351 (954)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~ 351 (954)
.... .....||+++.+|....+... .....++|||||+.|++...
T Consensus 123 --------------------------~~~~--------~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~ 168 (297)
T 3g4e_A 123 --------------------------AVLE--------RHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDS 168 (297)
T ss_dssp --------------------------TBCC--------TTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEG
T ss_pred --------------------------cccc--------CCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecC
Confidence 0000 023468888876665555444 45567899999999887763
Q ss_pred cCCcccccccCCCCcceEEEecc--CceE---EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 352 HRPYSFIVPCGRFPRQVGVWTTD--GIFV---RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~l~d~~--g~~~---~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
.. ..|++++++ ++.. +.+...... ...+..+++.+||+ |++. ..
T Consensus 169 ~~------------~~i~~~~~d~~~G~~~~~~~~~~~~~~----------~~~p~g~~~d~~G~-lwva-~~------- 217 (297)
T 3g4e_A 169 LS------------YSVDAFDYDLQTGQISNRRSVYKLEKE----------EQIPDGMCIDAEGK-LWVA-CY------- 217 (297)
T ss_dssp GG------------TEEEEEEECTTTCCEEEEEEEEECCGG----------GCEEEEEEEBTTSC-EEEE-EE-------
T ss_pred CC------------CcEEEEeccCCCCcccCcEEEEECCCC----------CCCCCeeEECCCCC-EEEE-Ec-------
Confidence 32 278888874 3322 222221110 12335688999995 3222 11
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEeecccccCceeec-cCCceEEEEEec
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWC-DDSLALVYESWY 476 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~s-pDg~~l~~~~~~ 476 (954)
..+.|++++. .+|.....+......+..++|+ ||++.|+.++..
T Consensus 218 ----~~~~v~~~d~--~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 218 ----NGGRVIRLDP--VTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp ----TTTEEEEECT--TTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred ----CCCEEEEEcC--CCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 2346888884 2243334444444567789998 899988887654
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=7.4e-09 Score=115.49 Aligned_cols=212 Identities=11% Similarity=0.021 Sum_probs=125.8
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH------CCcEEEEcCCC
Q 002194 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA------RGFAILGGPTT 721 (954)
Q Consensus 648 ~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~------~G~~V~~~~~~ 721 (954)
+|.+|+.....++. ...|.||++||++.... .| ......|++ .||.|++ .
T Consensus 93 ~g~~i~~~~~~~~~------~~~~pllllHG~~~s~~-----------~~----~~~~~~L~~~~~~~~~gf~vv~---~ 148 (408)
T 3g02_A 93 EGLTIHFAALFSER------EDAVPIALLHGWPGSFV-----------EF----YPILQLFREEYTPETLPFHLVV---P 148 (408)
T ss_dssp TTEEEEEEEECCSC------TTCEEEEEECCSSCCGG-----------GG----HHHHHHHHHHCCTTTCCEEEEE---E
T ss_pred CCEEEEEEEecCCC------CCCCeEEEECCCCCcHH-----------HH----HHHHHHHhcccccccCceEEEE---E
Confidence 89999988876532 12567899999752211 11 134455666 5899999 6
Q ss_pred CCCCCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCC-cEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC
Q 002194 722 PIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPS-KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (954)
Q Consensus 722 ~~~G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~-ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (954)
+..|+|.+.... .......+|+.+.++.| ..+ ++.++||||||.+++.++.++|+++...+.+++....
T Consensus 149 DlpG~G~S~~~~~~~~~~~~~~a~~~~~l~~~l------g~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~~~~ 222 (408)
T 3g02_A 149 SLPGYTFSSGPPLDKDFGLMDNARVVDQLMKDL------GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNMSAP 222 (408)
T ss_dssp CCTTSTTSCCSCSSSCCCHHHHHHHHHHHHHHT------TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCCCCC
Confidence 667888875532 12334444444444332 234 8999999999999999999997765555554443221
Q ss_pred CCCC--CCCcccc---------------c-------------------------------hhhhc-----H---------
Q 002194 797 TLTP--FGFQNED---------------R-------------------------------TLWEA-----T--------- 814 (954)
Q Consensus 797 ~~~~--~~~~~~~---------------~-------------------------------~~~~~-----~--------- 814 (954)
.... ..+.... . ..|.+ .
T Consensus 223 ~~~~~~~~l~~~e~~~~~~~~~~~~~~~~y~~~~~t~p~tl~~~l~dsP~gl~awi~ek~~~w~d~~~~~d~ll~~v~~y 302 (408)
T 3g02_A 223 PEGPSIESLSAAEKEGIARMEKFMTDGYAYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSLY 302 (408)
T ss_dssp TTCCCGGGSCHHHHHHHHHHHHHHHHSCHHHHHHHHCHHHHHHHHHSCHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHH
T ss_pred cccccccCCCHHHHHHHHHHHHHHHhCcchhhhhcCcHHHHHHHHhcChHHHHhhhhhhhhhccCCCCCHHHHHHHHHHH
Confidence 1000 0000000 0 00000 0
Q ss_pred ----------HHHHhc-Cc--cc-------ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 002194 815 ----------STYVEM-SP--FM-------SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874 (954)
Q Consensus 815 ----------~~~~~~-sp--~~-------~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 874 (954)
..|.+. .. .. ...++++|+++++|..|...+ +.. +.+.. ...+.+..++++|
T Consensus 303 ~~t~~~~~s~~~y~e~~~~~~~~~~~~~~~~l~~i~vPt~v~~~~~D~~~~--p~~---~~~~~---~~~~~~~~~~~gG 374 (408)
T 3g02_A 303 WLTESFPRAIHTYREWVPTASAPNGATPYQKELYIHKPFGFSFFPKDLVPV--PRS---WIATT---GNLVFFRDHAEGG 374 (408)
T ss_dssp HHTTHHHHHGGGHHHHTTC-------CTTTTTTCEEEEEEEEECTBSSSCC--CHH---HHGGG---EEEEEEEECSSCB
T ss_pred HhhccchhHHHHHHhhcccccccccccccccCCCcCCCEEEEeCCcccccC--cHH---HHHhc---CCeeEEEECCCCc
Confidence 000000 00 00 234567899999999997654 432 22222 2237788999999
Q ss_pred CcCCCcccHHHHHHHHHHHHHHhc
Q 002194 875 HGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 875 H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
|.. ..+..+.+.+.|.+||.+.-
T Consensus 375 Hf~-~lE~Pe~~~~~l~~fl~~~~ 397 (408)
T 3g02_A 375 HFA-ALERPRELKTDLTAFVEQVW 397 (408)
T ss_dssp SCH-HHHCHHHHHHHHHHHHHHHC
T ss_pred Cch-hhhCHHHHHHHHHHHHHHHH
Confidence 986 47788899999999998764
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-08 Score=114.21 Aligned_cols=211 Identities=9% Similarity=0.031 Sum_probs=122.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccC--CCCCCc------eee
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP--DGKLGQ------EIE 181 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~--~g~~~~------~~~ 181 (954)
.+..++|+|||+.|+..+.+ +.|.+|++.. .+.... .+.
T Consensus 113 ~v~~~~~~~~~~~l~s~s~d---------------------------------g~i~vwd~~~~~~~~~~~~~~~~~i~~ 159 (437)
T 3gre_A 113 TVTQITMIPNFDAFAVSSKD---------------------------------GQIIVLKVNHYQQESEVKFLNCECIRK 159 (437)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CEEEEEEeCCCCEEEEEeCC---------------------------------CEEEEEEeccccCCceeeccccceeEE
Confidence 56788999999999988876 4678887731 111000 011
Q ss_pred eecCC--CCCccccee--ecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeE
Q 002194 182 IQGFP--DGAKLNFVT--WSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (954)
Q Consensus 182 lt~~~--~~~~~~~~~--wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~ 257 (954)
+.-.+ ....+.... |+|||+.|+... ....|.++|+.+++......... ....+..++|+|||+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~ 228 (437)
T 3gre_A 160 INLKNFGKNEYAVRMRAFVNEEKSLLVALT---------NLSRVIIFDIRTLERLQIIENSP--RHGAVSSICIDEECCV 228 (437)
T ss_dssp EEGGGGSSCCCEEEEEEEECSSCEEEEEEE---------TTSEEEEEETTTCCEEEEEECCG--GGCCEEEEEECTTSCE
T ss_pred EEccCcccccCceEEEEEEcCCCCEEEEEe---------CCCeEEEEeCCCCeeeEEEccCC--CCCceEEEEECCCCCE
Confidence 11001 111222333 778898888755 25688889998877654443310 0112778999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcC-CC-cc
Q 002194 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIG-PP-AV 333 (954)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~-~~-~~ 333 (954)
|+... ....|.++|+ +++. ..+. .. ..
T Consensus 229 l~s~~-------------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 259 (437)
T 3gre_A 229 LILGT-------------------------------------------------TRGIIDIWDIRFNVLIRSWSFGDHAP 259 (437)
T ss_dssp EEEEE-------------------------------------------------TTSCEEEEETTTTEEEEEEBCTTCEE
T ss_pred EEEEc-------------------------------------------------CCCeEEEEEcCCccEEEEEecCCCCc
Confidence 98761 1234677787 6643 3332 22 45
Q ss_pred cccc----ccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcc----cCCc-------cccc-
Q 002194 334 YTSL----DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAE----DIPI-------AFNS- 396 (954)
Q Consensus 334 ~~~~----~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~----~~p~-------~~~~- 396 (954)
+..+ .|+|||++|+..+.+ +.|.+||+.+++ .+.+..+.... ..|. .+.+
T Consensus 260 v~~~~~~~~~s~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 326 (437)
T 3gre_A 260 ITHVEVCQFYGKNSVIVVGGSSK-------------TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGI 326 (437)
T ss_dssp EEEEEECTTTCTTEEEEEEESTT-------------EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCC
T ss_pred eEEEEeccccCCCccEEEEEcCC-------------CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccc
Confidence 5555 788899888877633 389999998554 34444322110 0010 0111
Q ss_pred -cccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEec
Q 002194 397 -VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQA 440 (954)
Q Consensus 397 -~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (954)
....+..++|+ |++.++.. +..+.|.+|++
T Consensus 327 ~~~~~v~~l~~~-~~~~l~s~-------------~~d~~i~~wd~ 357 (437)
T 3gre_A 327 RSLNALSTISVS-NDKILLTD-------------EATSSIVMFSL 357 (437)
T ss_dssp CSGGGGCCEEEE-TTEEEEEE-------------GGGTEEEEEET
T ss_pred ccCCceEEEEEC-CceEEEec-------------CCCCeEEEEEC
Confidence 23345678888 66544333 34567888886
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=9.2e-10 Score=127.52 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=91.6
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH-HCCcEEEEcCCC-CC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTT-PI 723 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~-~~ 723 (954)
+.|.. ...+|.|+....++ ++|+||++|||++..+... .+.. . .|+ .+|++|+.++|+ +.
T Consensus 95 ~edcl--~lnv~~P~~~~~~~--~~Pv~v~iHGG~~~~g~~~--------~~~~-----~-~la~~~g~vvv~~nYRlg~ 156 (542)
T 2h7c_A 95 SEDCL--YLNIYTPADLTKKN--RLPVMVWIHGGGLMVGAAS--------TYDG-----L-ALAAHENVVVVTIQYRLGI 156 (542)
T ss_dssp ESCCC--EEEEEECSCTTSCC--CEEEEEEECCSTTTSCCST--------TSCC-----H-HHHHHHTCEEEEECCCCHH
T ss_pred CCCCc--EEEEEECCCCCCCC--CCCEEEEECCCcccCCCcc--------ccCH-----H-HHHhcCCEEEEecCCCCcc
Confidence 45664 45688897643323 4999999999976544321 1211 1 344 489999998887 33
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--CCCcccEEEEeccCCC
Q 002194 724 IGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAYN 795 (954)
Q Consensus 724 ~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~~ 795 (954)
.|++............+.|+.++++|+.++ ...|+++|.|+|+|+||.++..++.. .+.+|+++|+.+|...
T Consensus 157 ~gf~~~~~~~~~~n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~ 233 (542)
T 2h7c_A 157 WGFFSTGDEHSRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVAL 233 (542)
T ss_dssp HHHCCCSSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred ccCCCCCcccCccchhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCcc
Confidence 343322111111234578999999999886 34799999999999999999999886 3578999999998654
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-09 Score=115.81 Aligned_cols=211 Identities=12% Similarity=-0.059 Sum_probs=120.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002194 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (954)
Q Consensus 648 ~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G 727 (954)
++..+.+.++.|+++..+. .+.||++||...... . .+.......|+++||.|+.. +..|+|
T Consensus 12 ~~~~l~~~i~~p~~~~~~~---~~~VvllHG~~~~~~-----------~--~~~~~l~~~L~~~G~~v~~~---d~~g~g 72 (317)
T 1tca_A 12 PKSVLDAGLTCQGASPSSV---SKPILLVPGTGTTGP-----------Q--SFDSNWIPLSTQLGYTPCWI---SPPPFM 72 (317)
T ss_dssp CHHHHHHTEEETTBCTTSC---SSEEEEECCTTCCHH-----------H--HHTTTHHHHHHTTTCEEEEE---CCTTTT
T ss_pred CHHHHhheeeCCCCCCCCC---CCeEEEECCCCCCcc-----------h--hhHHHHHHHHHhCCCEEEEE---CCCCCC
Confidence 3345666688888764332 466889999632110 0 01113456778889999994 445666
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC---CcccEEEEeccCCCCCCCC----
Q 002194 728 DEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGAYNRTLTP---- 800 (954)
Q Consensus 728 ~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~~~~~~~~---- 800 (954)
.+. .....+++.+.++++.+.. ..+++.++||||||.++.+++...| ++++++|++++........
T Consensus 73 ~~~-----~~~~~~~l~~~i~~~~~~~--g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~g~~~~~~~~ 145 (317)
T 1tca_A 73 LND-----TQVNTEYMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLD 145 (317)
T ss_dssp CSC-----HHHHHHHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBGGGHHHH
T ss_pred CCc-----HHHHHHHHHHHHHHHHHHh--CCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCCCCcchhhhh
Confidence 542 2334567778888887753 2368999999999999999988765 7899999999865421100
Q ss_pred -CCCcccc-chh--h-hcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHH--HHHHHHHHHhCCCcEEEEEe---
Q 002194 801 -FGFQNED-RTL--W-EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQ--SDRFFNALKGHGALCRLVIL--- 870 (954)
Q Consensus 801 -~~~~~~~-~~~--~-~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~--~~~~~~~l~~~g~~~~~~~~--- 870 (954)
+.+.... ... . .-...+.... ......|+++++|+.|.+|+ +.. +......+. +. +.+..
T Consensus 146 ~~~~~~~~~~~~~~~s~f~~~L~~~~----~~~~~vp~~~i~g~~D~iV~--p~~~~g~~~~~~l~--~a--~~~~~~~~ 215 (317)
T 1tca_A 146 ALAVSAPSVWQQTTGSALTTALRNAG----GLTQIVPTTNLYSATDEIVQ--PQVSNSPLDSSYLF--NG--KNVQAQAV 215 (317)
T ss_dssp HTTCBCHHHHHTBTTCHHHHHHHHTT----TTBCSSCEEEEECTTCSSSC--CCCSSSTTSTTCCB--TS--EEEEHHHH
T ss_pred hhhhcCchHHhhCcCcHHHHHHHhcC----CCCCCCCEEEEEeCCCCeEC--Cccccccchhhhcc--CC--ccEEeeec
Confidence 0000000 000 0 0001111000 01246899999999999997 554 211111121 11 22222
Q ss_pred ----CCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 871 ----PFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 871 ----~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
++.+|... ..+ ..++..+++||+.
T Consensus 216 ~~~~~~~gH~~~-l~~-p~~~~~v~~~L~~ 243 (317)
T 1tca_A 216 CGPLFVIDHAGS-LTS-QFSYVVGRSALRS 243 (317)
T ss_dssp HCTTCCCCTTHH-HHB-HHHHHHHHHHHHC
T ss_pred cCCCCccCcccc-cCC-HHHHHHHHHHhcC
Confidence 47789753 223 3456778888774
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.94 E-value=3.7e-07 Score=97.65 Aligned_cols=223 Identities=9% Similarity=-0.000 Sum_probs=124.7
Q ss_pred ceEEEEEe-CCceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCc
Q 002194 314 TQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392 (954)
Q Consensus 314 ~~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~ 392 (954)
..|++++. ++..+.+.....+..++++|||+.++ .. . ..|+++|.++++.+.+...... .+
T Consensus 35 ~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v-~~-~-------------~~l~~~d~~~g~~~~~~~~~~~--~~- 96 (297)
T 3g4e_A 35 KKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVA-TI-G-------------TKFCALNWKEQSAVVLATVDND--KK- 96 (297)
T ss_dssp TEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEE-EE-T-------------TEEEEEETTTTEEEEEEECCTT--CS-
T ss_pred CEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEE-EE-C-------------CeEEEEECCCCcEEEEEecCCC--CC-
Confidence 46889998 66665554446677889999999443 33 2 1788999988877766543211 01
Q ss_pred cccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEE
Q 002194 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVY 472 (954)
Q Consensus 393 ~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~ 472 (954)
......++++|||+ +++. +................||.++. + ++...+.........++|+|||+.|++
T Consensus 97 -----~~~~~di~~d~dG~-l~~~-~~~~~~~~~~~~~~~~~l~~~d~---~-g~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 97 -----NNRFNDGKVDPAGR-YFAG-TMAEETAPAVLERHQGALYSLFP---D-HHVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp -----SEEEEEEEECTTSC-EEEE-EEECCSBTTBCCTTCEEEEEECT---T-SCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred -----CCCCCCEEECCCCC-EEEe-cCCcccccccccCCCcEEEEEEC---C-CCEEEEeeccccccceEEcCCCCEEEE
Confidence 12345689999998 4333 21111000000012357888873 3 444445444444578999999999887
Q ss_pred EEeccccceEEEEEcC--CCCCCC-cEEEecCCC--CCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCC
Q 002194 473 ESWYKTRRTRTWVISP--GSKDVA-PRILFDRSS--EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATP 547 (954)
Q Consensus 473 ~~~~~~~~~~l~~~d~--~~~~~~-~~~l~~~~~--~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~ 547 (954)
+.... .+|++++. .++... .+.+..... ....+ +.++++|...+...
T Consensus 166 ~~~~~---~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g------~~~d~~G~lwva~~------------------- 217 (297)
T 3g4e_A 166 IDSLS---YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDG------MCIDAEGKLWVACY------------------- 217 (297)
T ss_dssp EEGGG---TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEE------EEEBTTSCEEEEEE-------------------
T ss_pred ecCCC---CcEEEEeccCCCCcccCcEEEEECCCCCCCCCe------eEECCCCCEEEEEc-------------------
Confidence 75443 35777665 343211 122222111 01111 55667775322222
Q ss_pred CCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCcccccc-ccCCEEEEEEecCC
Q 002194 548 EGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLY-LNQLKILTSKESKT 606 (954)
Q Consensus 548 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~s~~ 606 (954)
....|++||.++|+.......... .+.. .+|+ ||+++|+++.....
T Consensus 218 --~~~~v~~~d~~tG~~~~~i~~p~~----~~t~-------~~f~g~d~~~L~vt~~~~~ 264 (297)
T 3g4e_A 218 --NGGRVIRLDPVTGKRLQTVKLPVD----KTTS-------CCFGGKNYSEMYVTCARDG 264 (297)
T ss_dssp --TTTEEEEECTTTCCEEEEEECSSS----BEEE-------EEEESGGGCEEEEEEBCTT
T ss_pred --CCCEEEEEcCCCceEEEEEECCCC----CceE-------EEEeCCCCCEEEEEcCCcC
Confidence 112499999998876554433311 1222 4677 88888888777544
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.94 E-value=4.7e-08 Score=109.34 Aligned_cols=176 Identities=12% Similarity=0.090 Sum_probs=82.9
Q ss_pred eEEEEEe-CC-ceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcc--
Q 002194 315 QLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAE-- 388 (954)
Q Consensus 315 ~l~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~-- 388 (954)
.|.++|+ ++ ....+... ..+.+++|+|++..++.+... ++.+.+||+.+++. ..........
T Consensus 167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~------------d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER------------NGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEET------------TSEEEEEETTCCC----------CSCC
T ss_pred eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCC------------CCEEEEEECCCCcccccccccCCcccc
Confidence 3555566 44 33333333 667889999999754444422 23899999985532 2211111100
Q ss_pred ------cCCc----cccccccCccceeec-cCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccc
Q 002194 389 ------DIPI----AFNSVRKGMRSINWR-SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLR 457 (954)
Q Consensus 389 ------~~p~----~~~~~~~g~~~~~ws-pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~ 457 (954)
..+. ...+....+..+.|+ |||+.|+-. ...+.+.+|++ ..+.....+......
T Consensus 235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~-------------s~d~~i~vwd~--~~~~~~~~l~~~~~~ 299 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM-------------CKSGAWLRWNL--FANNDYNEISDSTMK 299 (393)
T ss_dssp CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE-------------CTTSEEEEEEC-----------------
T ss_pred eEEecccccceeeeecccccccceeeeeecCCCCEEEEE-------------eCCCCEEEEEC--ccCCCCceEeeecCc
Confidence 0000 111223345567776 899876654 33456777775 222222222221111
Q ss_pred c------------------Cceeecc-CCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeec
Q 002194 458 Y------------------GGISWCD-DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (954)
Q Consensus 458 ~------------------~~~~~sp-Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s 518 (954)
+ ....|+| .++.++.+...++ .|+++|..++. ....+. .....+.+ ++||
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg---~V~lwd~~~~~-~~~~~~-~~~~~V~s------vafs 368 (393)
T 4gq1_A 300 LGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG---LIQLINTYEKD-SNSIPI-QLGMPIVD------FCWH 368 (393)
T ss_dssp ----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT---EEEEEETTCTT-CCEEEE-ECSSCEEE------EEEC
T ss_pred cccEEEccccccccccCcceeEEEccCCCCEEEEEECCCC---EEEEEECCCCc-EEEEec-CCCCcEEE------EEEc
Confidence 1 1223443 3344444433332 46666766652 222222 22233444 8999
Q ss_pred cCCcEEEEEE
Q 002194 519 STGTYVIAKI 528 (954)
Q Consensus 519 pdG~~l~~~~ 528 (954)
|||++|+...
T Consensus 369 pdG~~LA~as 378 (393)
T 4gq1_A 369 QDGSHLAIAT 378 (393)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEe
Confidence 9999999886
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-07 Score=100.66 Aligned_cols=228 Identities=10% Similarity=-0.002 Sum_probs=122.2
Q ss_pred ceEEEEEeCCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCc
Q 002194 314 TQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392 (954)
Q Consensus 314 ~~l~~~~~~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~ 392 (954)
..|++++.+|+.+.+... .....++++|||+.++.... ...|.+++.++. .+.+...... .
T Consensus 67 ~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~-------------~~~v~~~~~~g~-~~~~~~~~~~--~-- 128 (305)
T 3dr2_A 67 RRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHG-------------RRAITRSDADGQ-AHLLVGRYAG--K-- 128 (305)
T ss_dssp TEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETT-------------TTEEEEECTTSC-EEEEECEETT--E--
T ss_pred CEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECC-------------CCEEEEECCCCC-EEEEEeccCC--C--
Confidence 457788876665555444 55678899999995554331 126888888743 4444321100 0
Q ss_pred cccccccCccceeeccCCCCceEEEEeccCC------CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccC
Q 002194 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGG------DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466 (954)
Q Consensus 393 ~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spD 466 (954)
....+..++++|||+ +++ ++...+. ...........||+++. ++++.+.+. .......++|+||
T Consensus 129 ----~~~~~~~i~~d~dG~-l~~-td~~~g~~~~~~~~~~~~~~~~~~v~~~d~---~~g~~~~~~-~~~~p~gl~~spd 198 (305)
T 3dr2_A 129 ----RLNSPNDLIVARDGA-IWF-TDPPFGLRKPSQGCPADPELAHHSVYRLPP---DGSPLQRMA-DLDHPNGLAFSPD 198 (305)
T ss_dssp ----ECSCCCCEEECTTSC-EEE-ECCSGGGSCGGGSCCCCCSSSCEEEEEECS---SSCCCEEEE-EESSEEEEEECTT
T ss_pred ----ccCCCCCEEECCCCC-EEE-eCcCCCccccccccccccccCCCeEEEEcC---CCCcEEEEe-cCCCCcceEEcCC
Confidence 012345789999997 333 2210000 00000012357888884 456666665 4444567899999
Q ss_pred CceEEEEEeccc--cceEEEEEcCCCCCC-CcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecC
Q 002194 467 SLALVYESWYKT--RRTRTWVISPGSKDV-APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGN 543 (954)
Q Consensus 467 g~~l~~~~~~~~--~~~~l~~~d~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~ 543 (954)
|+.|+++..... ...+|++++++++.. ....+.+.......+ +.++++|+ | |.. .
T Consensus 199 g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdg------i~~d~~G~-l-wv~-------------~- 256 (305)
T 3dr2_A 199 EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDG------FCVDRGGW-L-WSS-------------S- 256 (305)
T ss_dssp SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCS------EEECTTSC-E-EEC-------------C-
T ss_pred CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCe------EEECCCCC-E-EEe-------------c-
Confidence 999887754320 124688888765310 111222111111111 55666666 2 221 1
Q ss_pred CCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEEC
Q 002194 544 GATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSW 616 (954)
Q Consensus 544 ~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~ 616 (954)
...|++|+.++.....+..... +. ...|++|++.|++... ..+|.+++
T Consensus 257 -------~~gv~~~~~~g~~~~~~~~~~~------~~-------~~~f~~d~~~L~it~~-----~~l~~~~~ 304 (305)
T 3dr2_A 257 -------GTGVCVFDSDGQLLGHIPTPGT------AS-------NCTFDQAQQRLFITGG-----PCLWMLPL 304 (305)
T ss_dssp -------SSEEEEECTTSCEEEEEECSSC------CC-------EEEECTTSCEEEEEET-----TEEEEEEC
T ss_pred -------CCcEEEECCCCCEEEEEECCCc------ee-------EEEEeCCCCEEEEEcC-----CeEEEEEC
Confidence 1138999997665555543331 11 2457788887776554 25777654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.91 E-value=6.3e-08 Score=106.63 Aligned_cols=126 Identities=14% Similarity=0.106 Sum_probs=77.6
Q ss_pred eeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcc-eEEEeccCc-eEEEeccCCCcccCCccccccccCc
Q 002194 325 VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQ-VGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGM 401 (954)
Q Consensus 325 ~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~-l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~ 401 (954)
...+... ..+..++|||||++|+..+.+ +. +.+||+.++ ....+.... ....+
T Consensus 188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~d-------------~~~v~iwd~~~~~~~~~~~~g~-----------h~~~v 243 (355)
T 3vu4_A 188 GVLIKAHTNPIKMVRLNRKSDMVATCSQD-------------GTIIRVFKTEDGVLVREFRRGL-----------DRADV 243 (355)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETT-------------CSEEEEEETTTCCEEEEEECTT-----------CCSCE
T ss_pred cEEEEccCCceEEEEECCCCCEEEEEeCC-------------CCEEEEEECCCCcEEEEEEcCC-----------CCCcE
Confidence 3445544 778899999999999988844 37 999999854 444444210 11345
Q ss_pred cceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEee---------------------cccccCc
Q 002194 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK---------------------LDLRYGG 460 (954)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~---------------------~~~~~~~ 460 (954)
..++|+|||+.++.. +..+.|.+|++......+...+.. .......
T Consensus 244 ~~~~~s~~~~~l~s~-------------s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
T 3vu4_A 244 VDMKWSTDGSKLAVV-------------SDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCK 310 (355)
T ss_dssp EEEEECTTSCEEEEE-------------ETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCE
T ss_pred EEEEECCCCCEEEEE-------------ECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceE
Confidence 789999999977665 345578888862111111111100 0111245
Q ss_pred eeeccCCceEEEEEeccccceEEEEEcCC
Q 002194 461 ISWCDDSLALVYESWYKTRRTRTWVISPG 489 (954)
Q Consensus 461 ~~~spDg~~l~~~~~~~~~~~~l~~~d~~ 489 (954)
++|++||+.|+....++ ..++|.+...
T Consensus 311 ~a~~~d~~~l~~~~~dg--~~~~~~~~~~ 337 (355)
T 3vu4_A 311 IAWISESSLVVVWPHTR--MIETFKVVFD 337 (355)
T ss_dssp EEESSSSEEEEEETTTT--EEEEEEEEEE
T ss_pred EEEeCCCCEEEEEeCCC--eEEEEEEEcC
Confidence 78999999988875432 2566665543
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=122.81 Aligned_cols=132 Identities=20% Similarity=0.218 Sum_probs=91.6
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC-cEEEEcCCCC-C
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG-FAILGGPTTP-I 723 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G-~~V~~~~~~~-~ 723 (954)
+.|.. ...+|.|+. . ..++|+||++|||.+..+...... + ....|+++| ++|+..+|+- .
T Consensus 81 ~edcl--~l~v~~P~~--~--~~~~Pviv~iHGGg~~~g~~~~~~------~------~~~~la~~~~~vvv~~nYRlg~ 142 (498)
T 2ogt_A 81 SEDGL--YLNIWSPAA--D--GKKRPVLFWIHGGAFLFGSGSSPW------Y------DGTAFAKHGDVVVVTINYRMNV 142 (498)
T ss_dssp BSCCC--EEEEEESCS--S--SCCEEEEEEECCSTTTSCCTTCGG------G------CCHHHHHHHTCEEEEECCCCHH
T ss_pred CCCCc--EEEEEecCC--C--CCCCcEEEEEcCCccCCCCCCCCc------C------CHHHHHhCCCEEEEeCCCcCch
Confidence 45654 446778862 2 235899999999976544322110 1 134567766 9999988872 2
Q ss_pred CCCCCccc-----chhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhC--CCcccEEEEeccC
Q 002194 724 IGEGDEEA-----NDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGA 793 (954)
Q Consensus 724 ~G~G~~~~-----~~~~~~~~~~D~~~av~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~ 793 (954)
.|++.... ....+...+.|+.++++|++++. ..|+++|.|+|+|+||.+++.++... ..+|+++|+.+|.
T Consensus 143 ~Gf~~~~~~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~ 222 (498)
T 2ogt_A 143 FGFLHLGDSFGEAYAQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGS 222 (498)
T ss_dssp HHCCCCTTTTCGGGTTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCC
T ss_pred hhccCchhhccccccCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCC
Confidence 24433221 12234567899999999998862 37999999999999999999888753 4679999999997
Q ss_pred CC
Q 002194 794 YN 795 (954)
Q Consensus 794 ~~ 795 (954)
..
T Consensus 223 ~~ 224 (498)
T 2ogt_A 223 GS 224 (498)
T ss_dssp TT
T ss_pred cc
Confidence 55
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-07 Score=102.80 Aligned_cols=226 Identities=9% Similarity=0.021 Sum_probs=133.1
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
...|.|+||++.|+|+.. ....|++++.++++.+.+.. +.. +..+.|+|||++++..
T Consensus 51 ~egp~~~~~~~~l~~~d~--------~~~~i~~~d~~~~~~~~~~~-~~~-----v~~i~~~~dg~l~v~~--------- 107 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNI--------LERELHELHLASGRKTVHAL-PFM-----GSALAKISDSKQLIAS--------- 107 (326)
T ss_dssp EEEEEEETTTTEEEEEEG--------GGTEEEEEETTTTEEEEEEC-SSC-----EEEEEEEETTEEEEEE---------
T ss_pred CcCCeEeCCCCEEEEEEC--------CCCEEEEEECCCCcEEEEEC-CCc-----ceEEEEeCCCeEEEEE---------
Confidence 356899999999988742 24689999999887665532 221 5678899999877643
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC------ccccccccCCCC
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP------AVYTSLDPSPDE 343 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~------~~~~~~~~SpDG 343 (954)
...|++++. +|+.+.+... ..+..+.++|||
T Consensus 108 ------------------------------------------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G 145 (326)
T 2ghs_A 108 ------------------------------------------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG 145 (326)
T ss_dssp ------------------------------------------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS
T ss_pred ------------------------------------------CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC
Confidence 123888888 7776655331 245678899999
Q ss_pred cEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 344 k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
+.. +....... ......|+.++ + ++.+.+.... .....++|+|||+.+++. +
T Consensus 146 ~l~-v~~~~~~~------~~~~~~l~~~~-~-g~~~~~~~~~-------------~~~~~i~~s~dg~~lyv~-~----- 197 (326)
T 2ghs_A 146 ALW-IGTMGRKA------ETGAGSIYHVA-K-GKVTKLFADI-------------SIPNSICFSPDGTTGYFV-D----- 197 (326)
T ss_dssp CEE-EEEEETTC------CTTCEEEEEEE-T-TEEEEEEEEE-------------SSEEEEEECTTSCEEEEE-E-----
T ss_pred CEE-EEeCCCcC------CCCceEEEEEe-C-CcEEEeeCCC-------------cccCCeEEcCCCCEEEEE-E-----
Confidence 854 43322110 01123677777 4 4444443210 123468999999876664 1
Q ss_pred CccccccCCCeEEEEecCCCCC-C--CceEEee---cccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEE
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQG-E--GPEILHK---LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g-~--~~~~l~~---~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 497 (954)
...+.|++++.++.++ . ..+.+.. ......++.+++||. |+.+.... ..|++++.++. ...
T Consensus 198 ------~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~---~~v~~~d~~g~---~~~ 264 (326)
T 2ghs_A 198 ------TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGE---GAVDRYDTDGN---HIA 264 (326)
T ss_dssp ------TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETT---TEEEEECTTCC---EEE
T ss_pred ------CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCC---CEEEEECCCCC---EEE
Confidence 1245789998621122 1 1123322 123445688899996 44443332 35889988542 222
Q ss_pred EecCCCCCccCCCCCCCeeec-cCCcEEEEEE
Q 002194 498 LFDRSSEDVYSDPGSPMMRRT-STGTYVIAKI 528 (954)
Q Consensus 498 l~~~~~~~~~~~~~~~~~~~s-pdG~~l~~~~ 528 (954)
....+...+.. ++|+ +|++.|+...
T Consensus 265 ~i~~~~~~~~~------~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 265 RYEVPGKQTTC------PAFIGPDASRLLVTS 290 (326)
T ss_dssp EEECSCSBEEE------EEEESTTSCEEEEEE
T ss_pred EEECCCCCcEE------EEEecCCCCEEEEEe
Confidence 22222222222 6787 8888777665
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-09 Score=125.84 Aligned_cols=132 Identities=19% Similarity=0.198 Sum_probs=90.3
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCC-CC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTT-PI 723 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~-~~ 723 (954)
+.|... ..+|.|+.. + +.++|+||++|||.+..+..... .+ ....|++ +|++|+.++|+ +.
T Consensus 93 ~edcl~--l~v~~P~~~-~--~~~~Pviv~iHGGg~~~g~~~~~------~~------~~~~la~~~g~vvv~~nYRlg~ 155 (543)
T 2ha2_A 93 SEDCLY--LNVWTPYPR-P--ASPTPVLIWIYGGGFYSGAASLD------VY------DGRFLAQVEGAVLVSMNYRVGT 155 (543)
T ss_dssp ESCCCE--EEEEEESSC-C--SSCEEEEEEECCSTTTCCCTTSG------GG------CTHHHHHHHCCEEEEECCCCHH
T ss_pred CCcCCe--EEEeecCCC-C--CCCCeEEEEECCCccccCCCCCC------cC------ChHHHHhcCCEEEEEecccccc
Confidence 456654 466778652 2 23589999999997654432211 01 1234565 79999998887 33
Q ss_pred CCCCCcc-cchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhC--CCcccEEEEeccCC
Q 002194 724 IGEGDEE-ANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAY 794 (954)
Q Consensus 724 ~G~G~~~-~~~~~~~~~~~D~~~av~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~ 794 (954)
.|++... .....+...+.|+.+|++|++++. ..|+++|.|+|+|+||.+++.++... +.+|+++|+.+|..
T Consensus 156 ~Gf~~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 232 (543)
T 2ha2_A 156 FGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (543)
T ss_dssp HHHCCCTTCSSCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred cccccCCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence 3443321 111223456899999999998862 37999999999999999998887653 46899999999854
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=98.83 E-value=3.6e-09 Score=109.56 Aligned_cols=169 Identities=14% Similarity=0.137 Sum_probs=91.0
Q ss_pred HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCC-CCcEEEEeeChHHHHHHHHHHh------CCC
Q 002194 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAH-PSKIAVGGHSYGAFMTANLLAH------APH 782 (954)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d-~~ri~l~G~S~GG~~a~~~a~~------~p~ 782 (954)
+.+|.|++ .+..|+|.+... ...|+.+.++.+.+.-.+. .+++.++||||||.+|+.+|.+ .|+
T Consensus 37 ~~~~~vi~---~Dl~GhG~S~~~------~~~~~~~~~~~~~~~l~~~~~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~ 107 (242)
T 2k2q_B 37 QGECEMLA---AEPPGHGTNQTS------AIEDLEELTDLYKQELNLRPDRPFVLFGHSMGGMITFRLAQKLEREGIFPQ 107 (242)
T ss_dssp CCSCCCEE---EECCSSCCSCCC------TTTHHHHHHHHTTTTCCCCCCSSCEEECCSSCCHHHHHHHHHHHHHHCSSC
T ss_pred CCCeEEEE---EeCCCCCCCCCC------CcCCHHHHHHHHHHHHHhhcCCCEEEEeCCHhHHHHHHHHHHHHHcCCCCC
Confidence 46799999 667788887432 1235555555554432222 2589999999999999999986 566
Q ss_pred cccEEEEeccCCCCCCC-CC----------CCccccchhhhc-----------HHHHH---hcCcccccCCCCCCEEEEE
Q 002194 783 LFCCGIARSGAYNRTLT-PF----------GFQNEDRTLWEA-----------TSTYV---EMSPFMSANKLKKPILLVH 837 (954)
Q Consensus 783 ~~~a~v~~~~~~~~~~~-~~----------~~~~~~~~~~~~-----------~~~~~---~~sp~~~~~~~~~P~Lii~ 837 (954)
.+-......+....... .. ...........+ ...+. .+.. ..+.++++|+|+++
T Consensus 108 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~i~~P~lvi~ 186 (242)
T 2k2q_B 108 AVIISAIQPPHIQRKKVSHLPDDQFLDHIIQLGGMPAELVENKEVMSFFLPSFRSDYRALEQFEL-YDLAQIQSPVHVFN 186 (242)
T ss_dssp SEEEEEEECSCCCSCCCSSCTTHHHHHTTCCTTCCCCTTTHHHHTTTTCCSCHHHHHHHHTCCCC-SCCTTCCCSEEEEE
T ss_pred EEEEECCCCCCCCcccccCCCHHHHHHHHHHhCCCChHHhcCHHHHHHHHHHHHHHHHHHHhccc-CCCCccCCCEEEEe
Confidence 43111111111110000 00 000000000000 01111 1111 12567899999999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
|++|..++ .....+ +..-...+++++++ ||... .+..+.+.+.+.+||.+.
T Consensus 187 G~~D~~~~---~~~~~~----~~~~~~~~~~~~~~-gH~~~-~e~p~~~~~~i~~fl~~~ 237 (242)
T 2k2q_B 187 GLDDKKCI---RDAEGW----KKWAKDITFHQFDG-GHMFL-LSQTEEVAERIFAILNQH 237 (242)
T ss_dssp ECSSCCHH---HHHHHH----HTTCCCSEEEEEEC-CCSHH-HHHCHHHHHHHHHHHHTT
T ss_pred eCCCCcCH---HHHHHH----HHHhcCCeEEEEeC-CceeE-cCCHHHHHHHHHHHhhcc
Confidence 99998753 333332 22222234777876 99763 455567788888888753
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=4.8e-07 Score=102.58 Aligned_cols=221 Identities=17% Similarity=0.182 Sum_probs=132.1
Q ss_pred ceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcccc
Q 002194 114 LSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNF 193 (954)
Q Consensus 114 ~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~ 193 (954)
..+++||++|+....+ +.|.+|++.+ + .....+.+ +...+..
T Consensus 137 ~~~~~d~~~l~~g~~d---------------------------------g~i~iwd~~~-~--~~~~~~~~--h~~~v~~ 178 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRD---------------------------------NTIKIWDKNT-L--ECKRILTG--HTGSVLC 178 (435)
T ss_dssp EEEECCSSEEEEEESS---------------------------------SCEEEEESSS-C--CEEEEECC--CSSCEEE
T ss_pred EEEEECCCEEEEEeCC---------------------------------CeEEEEeCCC-C--eEEEEEcC--CCCcEEE
Confidence 3678899999988775 5799999854 2 22333433 2235666
Q ss_pred eeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCC
Q 002194 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (954)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~ 273 (954)
..| ||+.|+... ....|.++|+++++........... +..+.|++ ..|+...
T Consensus 179 l~~--~~~~l~sg~---------~dg~i~vwd~~~~~~~~~~~~h~~~----v~~l~~~~--~~l~s~s----------- 230 (435)
T 1p22_A 179 LQY--DERVIITGS---------SDSTVRVWDVNTGEMLNTLIHHCEA----VLHLRFNN--GMMVTCS----------- 230 (435)
T ss_dssp EEC--CSSEEEEEE---------TTSCEEEEESSSCCEEEEECCCCSC----EEEEECCT--TEEEEEE-----------
T ss_pred EEE--CCCEEEEEc---------CCCeEEEEECCCCcEEEEEcCCCCc----EEEEEEcC--CEEEEee-----------
Confidence 776 888887754 2457788888887765444333322 56777763 3555441
Q ss_pred CCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce----eEcCCC-ccccccccCCCCcEEE
Q 002194 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV----KEIGPP-AVYTSLDPSPDEKYIL 347 (954)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~----~~l~~~-~~~~~~~~SpDGk~l~ 347 (954)
....|.++|+ ++.. ..+... ..+..++| ||++|+
T Consensus 231 --------------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~ 270 (435)
T 1p22_A 231 --------------------------------------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIV 270 (435)
T ss_dssp --------------------------------------TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEE
T ss_pred --------------------------------------CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEE
Confidence 1234667777 5432 223333 55666666 889988
Q ss_pred EEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
..+.+ +.+.+||+.+++. ..+..+. ..+..+.| +++.++..
T Consensus 271 s~~~d-------------g~i~vwd~~~~~~~~~~~~~~-------------~~v~~~~~--~~~~l~~g---------- 312 (435)
T 1p22_A 271 SASGD-------------RTIKVWNTSTCEFVRTLNGHK-------------RGIACLQY--RDRLVVSG---------- 312 (435)
T ss_dssp EEETT-------------SEEEEEETTTCCEEEEEECCS-------------SCEEEEEE--ETTEEEEE----------
T ss_pred EEeCC-------------CeEEEEECCcCcEEEEEcCCC-------------CcEEEEEe--CCCEEEEE----------
Confidence 88743 3899999986543 3333221 22344555 45544433
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
+..+.|.+|++ .++.....+..+...+..++| |++.|+..+.++. .++|.+.
T Consensus 313 ---~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~--i~vwd~~ 364 (435)
T 1p22_A 313 ---SSDNTIRLWDI--ECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK--IKVWDLV 364 (435)
T ss_dssp ---ETTSCEEEEET--TTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC--EEEEEHH
T ss_pred ---eCCCeEEEEEC--CCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc--EEEEECC
Confidence 33557899996 233334455555666677777 7888887765432 5566543
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=98.81 E-value=4.5e-09 Score=121.48 Aligned_cols=132 Identities=18% Similarity=0.210 Sum_probs=90.4
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCC-C
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTP-I 723 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~-~ 723 (954)
+.|. +...+|.|+... .++|+||++|||.+..+...... + ....|++ .|++|+..+|+- .
T Consensus 89 ~edc--l~lnv~~P~~~~----~~~Pv~v~iHGGg~~~g~~~~~~------~------~~~~la~~~~~vvv~~nYRlg~ 150 (529)
T 1p0i_A 89 SEDC--LYLNVWIPAPKP----KNATVLIWIYGGGFQTGTSSLHV------Y------DGKFLARVERVIVVSMNYRVGA 150 (529)
T ss_dssp CSCC--CEEEEEEESSCC----SSEEEEEEECCSTTTSCCTTCGG------G------CTHHHHHHHCCEEEEECCCCHH
T ss_pred CCcC--CeEEEeeCCCCC----CCCeEEEEECCCccccCCCCccc------c------ChHHHhccCCeEEEEecccccc
Confidence 3455 445678886531 34899999999976544322111 1 1235565 799999988862 2
Q ss_pred CCCCCc-ccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--CCcccEEEEeccCCC
Q 002194 724 IGEGDE-EANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (954)
Q Consensus 724 ~G~G~~-~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~ 795 (954)
.|++.. ......+...+.|+.+|++|++++ ...|+++|.|+|+|+||.+++.++... ..+|+++|+.+|...
T Consensus 151 ~Gf~~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 228 (529)
T 1p0i_A 151 LGFLALPGNPEAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFN 228 (529)
T ss_dssp HHHCCCTTCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCTT
T ss_pred cccccCCCCCCCcCcccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCccc
Confidence 233222 111122345688999999999886 247999999999999999999888764 368999999998653
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=98.79 E-value=4.6e-08 Score=103.19 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=56.4
Q ss_pred HHHHHHHC--CcEEEEcCCCCCCCCCCcccc-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC
Q 002194 704 SVLLWLAR--GFAILGGPTTPIIGEGDEEAN-DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (954)
Q Consensus 704 ~~~~la~~--G~~V~~~~~~~~~G~G~~~~~-~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~ 780 (954)
....|++. ||.|++ .+. |+|.+... ..+.....+++...++.+...... .+++.++||||||.++..++.++
T Consensus 27 ~~~~L~~~~~g~~v~~---~d~-G~g~s~~~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~lvGhSmGG~ia~~~a~~~ 101 (279)
T 1ei9_A 27 IKKMVEKKIPGIHVLS---LEI-GKTLREDVENSFFLNVNSQVTTVCQILAKDPKL-QQGYNAMGFSQGGQFLRAVAQRC 101 (279)
T ss_dssp HHHHHHHHSTTCCEEE---CCC-SSSHHHHHHHHHHSCHHHHHHHHHHHHHSCGGG-TTCEEEEEETTHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCcEEEE---EEe-CCCCccccccccccCHHHHHHHHHHHHHhhhhc-cCCEEEEEECHHHHHHHHHHHHc
Confidence 45556654 889999 454 77765321 122222233444445555432212 26899999999999999999999
Q ss_pred CCc-ccEEEEeccCC
Q 002194 781 PHL-FCCGIARSGAY 794 (954)
Q Consensus 781 p~~-~~a~v~~~~~~ 794 (954)
|+. ++.+|++++..
T Consensus 102 ~~~~v~~lv~~~~p~ 116 (279)
T 1ei9_A 102 PSPPMVNLISVGGQH 116 (279)
T ss_dssp CSSCEEEEEEESCCT
T ss_pred CCcccceEEEecCcc
Confidence 984 99999887643
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.3e-09 Score=124.39 Aligned_cols=130 Identities=18% Similarity=0.144 Sum_probs=87.1
Q ss_pred EEEEEEcC-----CCCCCCCC--CCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC-
Q 002194 652 LSATLYLP-----PGYDPSKD--GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI- 723 (954)
Q Consensus 652 l~~~l~~P-----~~~~~~~~--~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~- 723 (954)
+...+|.| .. ...++ .++|+||++|||.|..+...... + ....|+++|++|+..+|+..
T Consensus 91 L~lnv~~P~~~~~~~-~~~~~~~~~~Pviv~iHGGg~~~g~~~~~~------~------~~~~l~~~g~vvv~~nYRl~~ 157 (551)
T 2fj0_A 91 IHANIHVPYYALPRD-AADKNRFAGLPVLVFIHGGGFAFGSGDSDL------H------GPEYLVSKDVIVITFNYRLNV 157 (551)
T ss_dssp CEEEEEEEGGGCCCC---------CEEEEEEECCSTTTSCCSCTTT------C------BCTTGGGGSCEEEEECCCCHH
T ss_pred eEEEEEecCcccccc-ccccCcCCCCCEEEEEcCCccccCCCcccc------c------CHHHHHhCCeEEEEeCCcCCc
Confidence 55677788 32 11111 12899999999976554332111 1 12345779999999888632
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--CCCcccEEEEeccCC
Q 002194 724 IGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAY 794 (954)
Q Consensus 724 ~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~ 794 (954)
.|+.........+...+.|+.+|++|++++ ...|+++|.|+|+|+||.+++.++.. .+.+|+++|+.+|..
T Consensus 158 ~Gf~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 233 (551)
T 2fj0_A 158 YGFLSLNSTSVPGNAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGTS 233 (551)
T ss_dssp HHHCCCSSSSCCSCHHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCT
T ss_pred cccccCcccCCCCchhHHHHHHHHHHHHHHHHHhCCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCCc
Confidence 232221111112345689999999999886 23799999999999999999998876 357899999999853
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=98.78 E-value=6.2e-09 Score=120.34 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=90.0
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH-HCCcEEEEcCCCC-C
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTP-I 723 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~-~ 723 (954)
+.|.. ...+|.|... . .++|+||++|||.|..+...... + ....|+ .+|++|+..+|+- .
T Consensus 91 sedcl--~lnv~~P~~~--~--~~~Pv~v~iHGG~~~~g~~~~~~------~------~~~~la~~~~~vvv~~nYRlg~ 152 (537)
T 1ea5_A 91 SEDCL--YLNIWVPSPR--P--KSTTVMVWIYGGGFYSGSSTLDV------Y------NGKYLAYTEEVVLVSLSYRVGA 152 (537)
T ss_dssp CSCCC--EEEEEECSSC--C--SSEEEEEEECCSTTTCCCTTCGG------G------CTHHHHHHHTCEEEECCCCCHH
T ss_pred CCcCC--eEEEeccCCC--C--CCCeEEEEECCCcccCCCCCCCc------c------ChHHHHhcCCEEEEEeccCccc
Confidence 44554 4567788652 1 34899999999976554332111 1 123455 7899999988862 2
Q ss_pred CCCCCc-ccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHh--CCCcccEEEEeccCCC
Q 002194 724 IGEGDE-EANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAYN 795 (954)
Q Consensus 724 ~G~G~~-~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~~ 795 (954)
.|+... ......+...+.|+.+|++|++++. ..||++|.|+|+|+||.+++.++.. ...+|+++|+.+|...
T Consensus 153 ~Gf~~~~~~~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 230 (537)
T 1ea5_A 153 FGFLALHGSQEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN 230 (537)
T ss_dssp HHHCCCTTCSSSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred cccccCCCCCCCcCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCcc
Confidence 232221 0111123456899999999998862 4799999999999999999988775 2368999999998653
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.1e-07 Score=97.58 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=68.9
Q ss_pred CCCCceecCC----CCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecC
Q 002194 110 PLPALSFSPQ----RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF 185 (954)
Q Consensus 110 ~~~~~~~SPD----G~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~ 185 (954)
.+..+++||| |++++..... ..++.+.. .++.. -...+ .+..|.+|++..+|. ....+..+
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~--g~lv~--ss~~g-------~d~~V~~~~~s~dG~--~~~s~~~~ 177 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNI--KAVLGLTK--RRLVS--SSGTL-------SDQQVEVMTFAEDGG--GKENQFLM 177 (356)
T ss_dssp EEEEECC------CCEEEEEEEEE--EEEEEETT--TEEEE--EESSS-------TTCEEEEEEECTTSC--EEEEEEEC
T ss_pred ceEEEEECCCccccccEEEeCCCe--EEEEecCC--CcEEE--ecccC-------CCCcEEEEEECCCCc--eeeeeccC
Confidence 5678999999 9999886642 11222211 00000 00000 125788999966652 22233333
Q ss_pred CCCCcccceeecC---CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 186 PDGAKLNFVTWSQ---DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 186 ~~~~~~~~~~wSP---DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
+ ..+...+||| ||+.|+-.+ ....|.++|+++|+..+......... ..+...+|||||+.++..
T Consensus 178 ~--~~v~~l~fs~~~g~~~~LaSgS---------~D~TIkIWDl~TGk~l~tL~g~~~~v-~~v~~vafSpdG~~lvs~ 244 (356)
T 2w18_A 178 P--PEETILTFAEVQGMQEALLGTT---------IMNNIVIWNLKTGQLLKKMHIDDSYQ-ASVCHKAYSEMGLLFIVL 244 (356)
T ss_dssp C--CSSCEEEEEEEETSTTEEEEEE---------TTSEEEEEETTTCCEEEEEECCC----CCCEEEEEEETTEEEEEE
T ss_pred C--CceeeEEeeccCCCCceEEEec---------CCCcEEEEECCCCcEEEEEcCCCcce-eeeEEEEECCCCCEEEEe
Confidence 3 3577788898 778877755 36788888999888644433221110 113355799999988765
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-08 Score=115.56 Aligned_cols=130 Identities=22% Similarity=0.288 Sum_probs=87.0
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHH-HHHH-HCCcEEEEcCCCCCC-CCCC
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV-LLWL-ARGFAILGGPTTPII-GEGD 728 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la-~~G~~V~~~~~~~~~-G~G~ 728 (954)
+...+|.|++..+. .++|+||++|||.+..+... .+. +..++ ..++ ..|++|+..+|+-.. |+..
T Consensus 98 l~l~v~~P~~~~~~--~~~Pv~v~iHGGg~~~g~~~--------~~~--~~~l~~~~~~~~~~~vvv~~nYRl~~~gf~~ 165 (534)
T 1llf_A 98 LTINVVRPPGTKAG--ANLPVMLWIFGGGFEIGSPT--------IFP--PAQMVTKSVLMGKPIIHVAVNYRVASWGFLA 165 (534)
T ss_dssp CEEEEEECTTCCTT--CCEEEEEEECCSTTTSCCGG--------GSC--CHHHHHHHHHTTCCCEEEEECCCCHHHHHCC
T ss_pred eEEEEEECCCCCCC--CCceEEEEEeCCCcccCCCc--------ccC--chHHHHHHHhcCCCEEEEEeCCCCCCCCCCC
Confidence 55678899764332 24899999999976554321 111 11111 1222 368999998886332 2211
Q ss_pred cc--cchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--------CCcccEEEEeccC
Q 002194 729 EE--ANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--------PHLFCCGIARSGA 793 (954)
Q Consensus 729 ~~--~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~~~ 793 (954)
.. .....+...+.|+.+|++|++++ ...|+++|.|+|+|+||.+++.++... +.+|+++|+.+|.
T Consensus 166 ~~~~~~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~ 243 (534)
T 1llf_A 166 GDDIKAEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp SHHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred cccccccCCCchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccC
Confidence 10 01123346789999999999886 247999999999999999888877653 4689999999984
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.1e-06 Score=91.03 Aligned_cols=254 Identities=11% Similarity=0.032 Sum_probs=127.9
Q ss_pred eceEEEEccCCCCCCceeeeecCC-------CCC-cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeec
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFP-------DGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL 234 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~-------~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 234 (954)
+.|+++|+.++- .+.+.+.... .+. .......+||| |+.+...+ ..+++...|.++|.++++...-
T Consensus 106 ~~I~viD~~t~p--~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~--~~g~~~g~v~vlD~~T~~v~~~ 179 (462)
T 2ece_A 106 SRIYIIDTKPNP--REPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGN--EEGEGPGGILMLDHYSFEPLGK 179 (462)
T ss_dssp CCEEEEECCSCT--TSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEE--TTSCSCCEEEEECTTTCCEEEE
T ss_pred CeEEEEECCCCC--CCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCC--cCCCCCCeEEEEECCCCeEEEE
Confidence 478999985432 2222222110 111 33445789999 33333221 2456678999999998876543
Q ss_pred ccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccc
Q 002194 235 FQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATT 314 (954)
Q Consensus 235 t~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~ 314 (954)
...+... ......+.|+||++.++.+ .- +. |. .-..+. ...++.. ....
T Consensus 180 ~~~~~~~-~~~~Yd~~~~p~~~~mvsS-~w--g~-------p~-----~~~~g~-----~~~~~~~----------~~~d 228 (462)
T 2ece_A 180 WEIDRGD-QYLAYDFWWNLPNEVLVSS-EW--AV-------PN-----TIEDGL-----KLEHLKD----------RYGN 228 (462)
T ss_dssp CCSBCTT-CCCCCCEEEETTTTEEEEC-BC--CC-------HH-----HHTTCC-----CTTTHHH----------HSCC
T ss_pred EccCCCC-ccccceEEECCCCCEEEEc-cC--cC-------cc-----cccccc-----chhhhhh----------ccCC
Confidence 3222110 0001257889999977654 10 00 00 000000 0000000 1345
Q ss_pred eEEEEEe-CCce-eEcCCC---ccccc--cccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEecc--CC
Q 002194 315 QLVLVSL-DGTV-KEIGPP---AVYTS--LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD--LP 385 (954)
Q Consensus 315 ~l~~~~~-~G~~-~~l~~~---~~~~~--~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~--~~ 385 (954)
+|.++|+ +++. ..+..+ ..... +.++|||++++....... .....+|++|..+++..+.+.. .+
T Consensus 229 ~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~-------~~Lss~V~v~~~d~g~~~~~~vIdi~ 301 (462)
T 2ece_A 229 RIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSL-------KDLSSSIWLWFYEDGKWNAEKVIEIP 301 (462)
T ss_dssp EEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEET-------TTCCEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeec-------cCCCceEEEEEecCCceeEEEEEeCC
Confidence 6888998 6643 233322 22222 466999999887764100 0123377777666554332221 11
Q ss_pred C---cccCC---ccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe----ecc
Q 002194 386 L---AEDIP---IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH----KLD 455 (954)
Q Consensus 386 ~---~~~~p---~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~----~~~ 455 (954)
. ...+| ..|.+.......+.+||||+.|++. ++ ..+.|.++++ .+.+..+.+. .+.
T Consensus 302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVS-nr-----------g~d~VavfdV--~d~~~~~lv~~I~tGG~ 367 (462)
T 2ece_A 302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLS-LW-----------GIGEVRQYDI--SNPFKPVLTGKVKLGGI 367 (462)
T ss_dssp CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEE-ET-----------TTTEEEEEEC--SSTTSCEEEEEEECBTT
T ss_pred CccccccccccccccccCCCceeEEEECCCCCEEEEE-eC-----------CCCEEEEEEe--cCCCCcEEEEEEEeCCe
Confidence 1 11111 1111112345679999999976554 22 2457888886 2333343331 111
Q ss_pred -------------cccCceeeccCCceEEEEE
Q 002194 456 -------------LRYGGISWCDDSLALVYES 474 (954)
Q Consensus 456 -------------~~~~~~~~spDg~~l~~~~ 474 (954)
+....+.+||||++|+.+.
T Consensus 368 ~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 368 FHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1257789999999998875
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=1e-05 Score=91.90 Aligned_cols=268 Identities=11% Similarity=0.042 Sum_probs=152.7
Q ss_pred eecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCC
Q 002194 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (954)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~ 274 (954)
.+++||+.|+... ....|.++|+.+++........... +..+.|+ ++.|+...
T Consensus 124 ~~~~~g~~l~sg~---------~dg~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~--~~~l~s~~------------ 176 (445)
T 2ovr_B 124 CLQFCGNRIVSGS---------DDNTLKVWSAVTGKCLRTLVGHTGG----VWSSQMR--DNIIISGS------------ 176 (445)
T ss_dssp EEEEETTEEEEEE---------TTSCEEEEETTTCCEEEECCCCSSC----EEEEEEE--TTEEEEEE------------
T ss_pred EEEEcCCEEEEEE---------CCCcEEEEECCCCcEEEEEcCCCCC----EEEEEec--CCEEEEEe------------
Confidence 5778899888755 2557788888887765444333322 5667776 45666541
Q ss_pred CCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-ccccccccCCCCcEEEEEee
Q 002194 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKYILISSI 351 (954)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~-~~~~~~~~SpDGk~l~~~s~ 351 (954)
..+.|.++++ +|+. ..+... ..+..+.| +++.|+..+.
T Consensus 177 -------------------------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~s~ 217 (445)
T 2ovr_B 177 -------------------------------------TDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSR 217 (445)
T ss_dssp -------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred -------------------------------------CCCeEEEEECCcCcEEEEECCCCCcEEEEEe--cCCEEEEEeC
Confidence 1234777787 6643 333333 55666666 4677777763
Q ss_pred cCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccc
Q 002194 352 HRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVT 430 (954)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~ 430 (954)
+ +.+.+||+.+++. ..+..+. ..+..+.| ||+.++.. +
T Consensus 218 d-------------g~i~~wd~~~~~~~~~~~~~~-------------~~v~~~~~--~~~~l~~~-------------~ 256 (445)
T 2ovr_B 218 D-------------ATLRVWDIETGQCLHVLMGHV-------------AAVRCVQY--DGRRVVSG-------------A 256 (445)
T ss_dssp T-------------SEEEEEESSSCCEEEEEECCS-------------SCEEEEEE--CSSCEEEE-------------E
T ss_pred C-------------CEEEEEECCCCcEEEEEcCCc-------------ccEEEEEE--CCCEEEEE-------------c
Confidence 3 3899999985543 3333221 23345666 77766554 3
Q ss_pred CCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCC
Q 002194 431 PRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510 (954)
Q Consensus 431 ~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~ 510 (954)
..+.|.+|++ .++.....+..+...+..+.| |++.|+....++ .|.++|+.++ +.......+...
T Consensus 257 ~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~----~i~i~d~~~~--~~~~~~~~~~~~----- 321 (445)
T 2ovr_B 257 YDFMVKVWDP--ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT----SIRVWDVETG--NCIHTLTGHQSL----- 321 (445)
T ss_dssp TTSCEEEEEG--GGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS----CEEEEETTTC--CEEEEECCCCSC-----
T ss_pred CCCEEEEEEC--CCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC----eEEEEECCCC--CEEEEEcCCccc-----
Confidence 3557888986 233233444445555666777 888887776543 3566666664 223222222111
Q ss_pred CCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCcccc
Q 002194 511 GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGD 590 (954)
Q Consensus 511 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 590 (954)
...++++++.++.... ...|++||+.+++.......... ....+. +
T Consensus 322 ---v~~~~~~~~~l~~~~~---------------------dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~---------~ 367 (445)
T 2ovr_B 322 ---TSGMELKDNILVSGNA---------------------DSTVKIWDIKTGQCLQTLQGPNK-HQSAVT---------C 367 (445)
T ss_dssp ---EEEEEEETTEEEEEET---------------------TSCEEEEETTTCCEEEEECSTTS-CSSCEE---------E
T ss_pred ---EEEEEEeCCEEEEEeC---------------------CCeEEEEECCCCcEEEEEccCCC-CCCCEE---------E
Confidence 1345667776665541 23499999988876554443210 000111 2
Q ss_pred ccccCCEEEEEEecCCCCceEEEEECCCCcee
Q 002194 591 LYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (954)
Q Consensus 591 ~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~ 622 (954)
+..+++.++.... ...+.+|++.+++..
T Consensus 368 ~~~~~~~l~s~~~----dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 368 LQFNKNFVITSSD----DGTVKLWDLKTGEFI 395 (445)
T ss_dssp EEECSSEEEEEET----TSEEEEEETTTCCEE
T ss_pred EEECCCEEEEEeC----CCeEEEEECCCCcee
Confidence 3335555554332 356999998887653
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.9e-08 Score=110.48 Aligned_cols=161 Identities=12% Similarity=-0.024 Sum_probs=103.6
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~a 746 (954)
.|+||++||..... ...+.......|++ .||.|+. .+..|+|.+.... ........|+.+.
T Consensus 70 ~~~vvllHG~~~s~-------------~~~w~~~~~~~l~~~~~~~Vi~---~D~~g~g~s~~~~~~~~~~~~~~dl~~~ 133 (432)
T 1gpl_A 70 RKTRFIIHGFTDSG-------------ENSWLSDMCKNMFQVEKVNCIC---VDWKGGSKAQYSQASQNIRVVGAEVAYL 133 (432)
T ss_dssp SEEEEEECCTTCCT-------------TSHHHHHHHHHHHHHCCEEEEE---EECHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCC-------------CchHHHHHHHHHHhcCCcEEEE---EECccccCccchhhHhhHHHHHHHHHHH
Confidence 58999999963110 01111123455665 7999999 5556666654221 1234456888999
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCccccc
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSA 826 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 826 (954)
+++|.++..++.+++.++|||+||.+|+.++.++|+++++++.++|..-..... .. ..+.++
T Consensus 134 i~~l~~~~g~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~p~~~~~----~~----------~~~l~~---- 195 (432)
T 1gpl_A 134 VQVLSTSLNYAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAEPYFQDT----PE----------EVRLDP---- 195 (432)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBCTTTTTC----CT----------TTSCCG----
T ss_pred HHHHHHhcCCCcccEEEEEeCHHHHHHHHHHHhcccccceeEEeccccccccCC----Ch----------hhccCc----
Confidence 999986644667899999999999999999999999999999988753211000 00 001111
Q ss_pred CCCCCCEEEEEeCCCCCCCCch---HHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 002194 827 NKLKKPILLVHGEEDNNSGTLT---MQSDRFFNALKGHGALCRLVILPFESHGY 877 (954)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (954)
....++.+||+..|.+|| . .... .. ..+.+||+.||..
T Consensus 196 -~da~~V~vIHt~~d~lVP--~~~~g~~~-------~l---g~~dfypngg~~q 236 (432)
T 1gpl_A 196 -SDAKFVDVIHTDISPILP--SLGFGMSQ-------KV---GHMDFFPNGGKDM 236 (432)
T ss_dssp -GGSSEEEEECSCCSCHHH--HCCCBCSS-------CC---SSEEEEEGGGSSC
T ss_pred -CCCceEEEEEcCCccccc--cccccccc-------cc---cceEEccCCCCCC
Confidence 223589999999999886 4 1111 11 2455689889954
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=8.7e-07 Score=96.77 Aligned_cols=253 Identities=9% Similarity=0.020 Sum_probs=131.4
Q ss_pred EEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhc
Q 002194 220 RVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLL 299 (954)
Q Consensus 220 ~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l 299 (954)
.|+++|+++++...-...+.. . .+.+||||+.+|++..... |. .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-----P-~i~~spDg~~lyVan~~~~--------------------------r~----~ 90 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-----S-LAVAGHSGSDFALASTSFA--------------------------RS----A 90 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-----C-EEEECTTSSCEEEEEEEET--------------------------TT----T
T ss_pred eEEEEECCCCeEEEEEeCCCC-----C-ceEECCCCCEEEEEccccc--------------------------cc----c
Confidence 899999999877554433332 2 6899999999998721000 00 0
Q ss_pred cCccccccccccccceEEEEEe-CCc-eeEcCCC--------ccccccccCCCCcEEEEEeecCCcccccccCCCCcceE
Q 002194 300 KDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP--------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVG 369 (954)
Q Consensus 300 ~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~--------~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~ 369 (954)
.-+ ....|..+|+ +++ ...+.-+ .....+.+|||||++++..... ...+.
T Consensus 91 ~G~---------~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~-----------~~~v~ 150 (368)
T 1mda_H 91 KGK---------RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS-----------SAAAG 150 (368)
T ss_dssp SSS---------EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS-----------SCEEE
T ss_pred cCC---------CCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCC-----------CCeEE
Confidence 000 1345888888 664 3333211 2356789999999998875321 11466
Q ss_pred E--EeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec---cC-------------CCc------
Q 002194 370 V--WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ---DG-------------GDA------ 425 (954)
Q Consensus 370 l--~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~---~~-------------~~~------ 425 (954)
+ +|+.+ .+.+.........|. ....-+++++||+.+++-.+.. ++ ..+
T Consensus 151 V~~iD~~t--v~~i~v~~~~~~~p~------g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~ 222 (368)
T 1mda_H 151 LSVPGASD--DQLTKSASCFHIHPG------AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP 222 (368)
T ss_dssp EEETTTEE--EEEEECSSCCCCEEE------ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred EEEEchhh--ceEEECCCceEEccC------CCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccC
Confidence 6 66655 344422110000000 1111245566666544332210 00 000
Q ss_pred --cccccCCCeEEEEecCCCCCCCceEEeec----------ccccC---ceeeccCCceEEEEEecc-cc----ceEEEE
Q 002194 426 --KVEVTPRDIIYTQQAEPVQGEGPEILHKL----------DLRYG---GISWCDDSLALVYESWYK-TR----RTRTWV 485 (954)
Q Consensus 426 --~~~~~~~~~l~~~~~~~~~g~~~~~l~~~----------~~~~~---~~~~spDg~~l~~~~~~~-~~----~~~l~~ 485 (954)
.+.++. +.++++|. .++..+.+... .+... .++++|||++++++.... +. ...+.+
T Consensus 223 ~~~~~vs~-~~V~viD~---~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~V 298 (368)
T 1mda_H 223 GMLVWAVA-SSILQGDI---PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS 298 (368)
T ss_dssp TEEEECBS-SCCEEEEC---CSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred CEEEEEcC-CEEEEEEC---CCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEE
Confidence 011112 46777774 33332222111 11112 278999999988875511 10 123559
Q ss_pred EcCCCCCCCcEEE-ecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCe
Q 002194 486 ISPGSKDVAPRIL-FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSK 564 (954)
Q Consensus 486 ~d~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 564 (954)
+|+.+... ...+ .... ..+ +.|+|||+++++.... ....|.++|+++++.
T Consensus 299 iD~~t~~v-v~~i~vg~~---p~g------i~~s~Dg~~l~va~~~-------------------~~~~VsVID~~t~kv 349 (368)
T 1mda_H 299 VTASVGQT-SGPISNGHD---SDA------IIAAQDGASDNYANSA-------------------GTEVLDIYDAASDQD 349 (368)
T ss_dssp EESSSCCE-EECCEEEEE---ECE------EEECCSSSCEEEEEET-------------------TTTEEEEEESSSCEE
T ss_pred EECCCCeE-EEEEECCCC---cce------EEECCCCCEEEEEccC-------------------CCCeEEEEECCCCcE
Confidence 99988521 1111 1111 112 7899999988887631 023599999999886
Q ss_pred EEEec
Q 002194 565 ERIWE 569 (954)
Q Consensus 565 ~~l~~ 569 (954)
..-..
T Consensus 350 v~~I~ 354 (368)
T 1mda_H 350 QSSVE 354 (368)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 65443
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.9e-08 Score=115.90 Aligned_cols=115 Identities=18% Similarity=0.163 Sum_probs=79.9
Q ss_pred CCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCC-CCCCCCCc-------ccchhhHHH
Q 002194 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTT-PIIGEGDE-------EANDRFVEQ 738 (954)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~-~~~G~G~~-------~~~~~~~~~ 738 (954)
.++|+|||+|||.|..+...... + . ...|++ .|++|+..+|+ +..|+... ......+..
T Consensus 139 ~~~PV~v~iHGGg~~~g~~~~~~------~---~---~~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~ 206 (585)
T 1dx4_A 139 NGLPILIWIYGGGFMTGSATLDI------Y---N---ADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNV 206 (585)
T ss_dssp SSEEEEEEECCSTTTCCCTTCGG------G---C---CHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCH
T ss_pred CCCCEEEEECCCcccCCCCCCCC------C---C---chhhhccCCEEEEEecccccchhhcccccccccccCCCCCCcc
Confidence 35899999999976554322111 1 1 234554 79999998887 33333221 011112345
Q ss_pred HHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhC--CCcccEEEEeccCC
Q 002194 739 LVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAY 794 (954)
Q Consensus 739 ~~~D~~~av~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~ 794 (954)
.+.|+.+|++|++++- ..||++|.|+|+|+||.++..++... ..+|+++|+.+|..
T Consensus 207 gl~D~~~al~wv~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 207 GLWDQALAIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHHHHHHHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred cHHHHHHHHHHHHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 6889999999999872 36999999999999999998887753 36899999999854
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-06 Score=93.01 Aligned_cols=241 Identities=9% Similarity=0.046 Sum_probs=129.3
Q ss_pred eceEEEEccCCCCCCceeeeecC---CCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeec-ccCC
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGF---PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL-FQSP 238 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~---~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-t~~~ 238 (954)
..|++|+..+ ++.+.+... .....+....++||+..|+++.. ...|++++.+ |+.+.+ ....
T Consensus 46 ~~i~~~d~~~----g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~---------~~~l~~~d~~-g~~~~~~~~~~ 111 (314)
T 1pjx_A 46 GEILRIDLKT----GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---------RLGLLVVQTD-GTFEEIAKKDS 111 (314)
T ss_dssp CEEEEECTTT----CCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---------TTEEEEEETT-SCEEECCSBCT
T ss_pred CEEEEEeCCC----CcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC---------CCCEEEEeCC-CCEEEEEeccC
Confidence 3677777533 333333210 01124667889999334554331 2379999998 777665 4322
Q ss_pred CccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEE
Q 002194 239 DIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (954)
Q Consensus 239 ~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~ 318 (954)
.......+..+++++||++.+......... . +..... ......|++
T Consensus 112 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~--~-------------------------~~~~~~-------~~~~~~l~~ 157 (314)
T 1pjx_A 112 EGRRMQGCNDCAFDYEGNLWITAPAGEVAP--A-------------------------DYTRSM-------QEKFGSIYC 157 (314)
T ss_dssp TSCBCBCCCEEEECTTSCEEEEECBCBCTT--S-------------------------CCCBTT-------SSSCEEEEE
T ss_pred CCccccCCcCEEECCCCCEEEEecCccccc--c-------------------------cccccc-------cCCCCeEEE
Confidence 110011255788999997555431110000 0 000000 002345888
Q ss_pred EEeCCceeEcCCC-ccccccccC----CCCcEEEEEeecCCcccccccCCCCcceEEEecc-CceEE---EeccCCCccc
Q 002194 319 VSLDGTVKEIGPP-AVYTSLDPS----PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVR---ELCDLPLAED 389 (954)
Q Consensus 319 ~~~~G~~~~l~~~-~~~~~~~~S----pDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~-g~~~~---~l~~~~~~~~ 389 (954)
++.+|+...+... .....++|+ |||+.|++.... ...|++|+.+ .+... .+...+...
T Consensus 158 ~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~------------~~~i~~~~~~~~g~~~~~~~~~~~~~~~- 224 (314)
T 1pjx_A 158 FTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP------------TKKLWSYDIKGPAKIENKKVWGHIPGTH- 224 (314)
T ss_dssp ECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT------------TTEEEEEEEEETTEEEEEEEEEECCCCS-
T ss_pred ECCCCCEEEeccCCCCcceEEEecccCCCCCEEEEEECC------------CCeEEEEECCCCCccccceEEEECCCCC-
Confidence 8776655544333 344667899 999988776522 2378899876 33321 111111100
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCce
Q 002194 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (954)
Q Consensus 390 ~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~ 469 (954)
...+..+++++||+ + |... ...+.|++++. .++.....+......+..++|+|||+.
T Consensus 225 --------~~~p~~i~~d~~G~-l-~v~~-----------~~~~~i~~~d~--~~g~~~~~~~~~~~~~~~i~~~~dg~~ 281 (314)
T 1pjx_A 225 --------EGGADGMDFDEDNN-L-LVAN-----------WGSSHIEVFGP--DGGQPKMRIRCPFEKPSNLHFKPQTKT 281 (314)
T ss_dssp --------SCEEEEEEEBTTCC-E-EEEE-----------ETTTEEEEECT--TCBSCSEEEECSSSCEEEEEECTTSSE
T ss_pred --------CCCCCceEECCCCC-E-EEEE-----------cCCCEEEEEcC--CCCcEeEEEeCCCCCceeEEECCCCCE
Confidence 01235688999995 2 2211 12347888884 224444445444455677899999998
Q ss_pred EEEEEeccccceEEEEEcCCC
Q 002194 470 LVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~ 490 (954)
|+++...+ ..|++++++.
T Consensus 282 l~v~~~~~---~~l~~~~~~~ 299 (314)
T 1pjx_A 282 IFVTEHEN---NAVWKFEWQR 299 (314)
T ss_dssp EEEEETTT---TEEEEEECSS
T ss_pred EEEEeCCC---CeEEEEeCCC
Confidence 87775443 3588888765
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=98.66 E-value=3.1e-08 Score=114.55 Aligned_cols=134 Identities=24% Similarity=0.315 Sum_probs=88.2
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHH-HHH-HCCcEEEEcCCCCC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVL-LWL-ARGFAILGGPTTPI 723 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~la-~~G~~V~~~~~~~~ 723 (954)
+.|. +...+|.|++.... .++|+|||+|||.+..+... .+. +..++. .++ ..|++|+..+|+..
T Consensus 102 sedc--l~l~v~~P~~~~~~--~~~Pviv~iHGGg~~~g~~~--------~~~--~~~l~~~~l~~~~~~vvv~~nYRl~ 167 (544)
T 1thg_A 102 NEDC--LYLNVFRPAGTKPD--AKLPVMVWIYGGAFVYGSSA--------AYP--GNSYVKESINMGQPVVFVSINYRTG 167 (544)
T ss_dssp CSCC--CEEEEEEETTCCTT--CCEEEEEEECCCTTCCSGGG--------GCC--SHHHHHHHHHTTCCCEEEEECCCCH
T ss_pred CCCC--eEEEEEeCCCCCCC--CCCcEEEEECCCccccCCcc--------ccC--chHHHHHHhhcCCCEEEEeCCCCCC
Confidence 3455 45567889764332 35899999999976654321 111 111121 122 25899999888643
Q ss_pred C-CCCCccc--chhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--------CCcccEEEE
Q 002194 724 I-GEGDEEA--NDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--------PHLFCCGIA 789 (954)
Q Consensus 724 ~-G~G~~~~--~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~ 789 (954)
. |+..... ....+...+.|+.+|++|++++ ...|+++|.|+|+|+||.+++.++... ..+|+++|+
T Consensus 168 ~~gf~~~~~~~~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~ 247 (544)
T 1thg_A 168 PFGFLGGDAITAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAIL 247 (544)
T ss_dssp HHHHCCSHHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEE
T ss_pred cccCCCcccccccCCCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEE
Confidence 2 2111100 0122345689999999999886 247999999999999999998887752 467999999
Q ss_pred eccC
Q 002194 790 RSGA 793 (954)
Q Consensus 790 ~~~~ 793 (954)
.+|.
T Consensus 248 ~Sg~ 251 (544)
T 1thg_A 248 QSGG 251 (544)
T ss_dssp ESCC
T ss_pred eccc
Confidence 9984
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.4e-05 Score=82.97 Aligned_cols=119 Identities=13% Similarity=-0.024 Sum_probs=60.6
Q ss_pred cccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002194 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (954)
Q Consensus 335 ~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i 413 (954)
..+..+||| |+++...+. .+...+.+.++|.++.++ .++......... ...+.|+||++ +
T Consensus 141 h~~~~~pdG--i~Vs~~g~~------~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~----------~Yd~~~~p~~~-~ 201 (462)
T 2ece_A 141 HTVHCGPDA--IYISALGNE------EGEGPGGILMLDHYSFEPLGKWEIDRGDQYL----------AYDFWWNLPNE-V 201 (462)
T ss_dssp EEEEECSSC--EEEEEEEET------TSCSCCEEEEECTTTCCEEEECCSBCTTCCC----------CCCEEEETTTT-E
T ss_pred cceeECCCe--EEEEcCCCc------CCCCCCeEEEEECCCCeEEEEEccCCCCccc----------cceEEECCCCC-E
Confidence 345789999 444443332 122356899999986654 344322111111 12578999999 4
Q ss_pred eEEEEe------ccCCCcc-ccccCCCeEEEEecCCCCCCCce-EEeec-c-cccCce--eeccCCceEEEEEe
Q 002194 414 LYWAET------QDGGDAK-VEVTPRDIIYTQQAEPVQGEGPE-ILHKL-D-LRYGGI--SWCDDSLALVYESW 475 (954)
Q Consensus 414 ~~~~~~------~~~~~~~-~~~~~~~~l~~~~~~~~~g~~~~-~l~~~-~-~~~~~~--~~spDg~~l~~~~~ 475 (954)
+|..+. ..|-... ......++|.+|++ ++++.. .+.-+ . .....+ +|+|||++++....
T Consensus 202 mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~---~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e 272 (462)
T 2ece_A 202 LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL---RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMV 272 (462)
T ss_dssp EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET---TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEE
T ss_pred EEEccCcCccccccccchhhhhhccCCEEEEEEC---CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEe
Confidence 444321 0110000 00023578999996 443322 22221 1 112223 45999998777654
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.8e-08 Score=116.84 Aligned_cols=140 Identities=17% Similarity=0.131 Sum_probs=86.7
Q ss_pred EcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCC-
Q 002194 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTP- 722 (954)
Q Consensus 645 ~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~- 722 (954)
.+.|. +...+|.|..... ...++|+|||+|||.|..+....... ..... .....|+. .|++|+..+|+-
T Consensus 76 ~sedc--l~lnv~~P~~~~~-~~~~~PV~v~iHGGg~~~Gs~~~~~~-----~~~~~-~~~~~la~~~~vvvV~~nYRLg 146 (579)
T 2bce_A 76 GNEDC--LYLNIWVPQGRKE-VSHDLPVMIWIYGGAFLMGASQGANF-----LSNYL-YDGEEIATRGNVIVVTFNYRVG 146 (579)
T ss_dssp SCSCC--CEEEEEEEECSSS-CCCSEEEEEECCCCSEEEC------------CTTGG-GCCHHHHHHHTCEEEEECCCCH
T ss_pred CCCCC--CEEEEEECCCCCC-CCCCCeEEEEECCCcccCCCCCcccc-----ccccc-cChHHHhcCCCEEEEEeCCccc
Confidence 34565 4556788865321 12358999999999765443211000 00000 00234554 579999988862
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--CCCcccEEEEeccC
Q 002194 723 IIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGA 793 (954)
Q Consensus 723 ~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~ 793 (954)
..|+.............+.|+.+|++|++++ ...|+++|.|+|+|+||.++..++.. ...+|+++|+.+|.
T Consensus 147 ~~Gfl~~~~~~~pgn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~ 222 (579)
T 2bce_A 147 PLGFLSTGDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp HHHHCCCSSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred cccCCcCCCCCCCCccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCC
Confidence 2232221101111123578999999999886 24799999999999999999988765 34689999999874
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=2.5e-06 Score=89.53 Aligned_cols=190 Identities=15% Similarity=0.105 Sum_probs=118.9
Q ss_pred CCeEEEEEeeccccCCCCceEEEEEECCCCceeec-----ccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCC
Q 002194 200 GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL-----FQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (954)
Q Consensus 200 G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-----t~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~ 274 (954)
|..|+|+. ...|++++++++..+.+ ...+.. ....++|+++++.|+++..
T Consensus 1 ~~~l~~~~----------~~~I~~~~~~g~~~~~~~~~~~~~~~~~----~~~gi~~d~~~~~ly~~d~----------- 55 (267)
T 1npe_A 1 GTHLLFAQ----------TGKIERLPLERNTMKKTEAKAFLHIPAK----VIIGLAFDCVDKVVYWTDI----------- 55 (267)
T ss_dssp CEEEEEEE----------EEEEEEEEESSSCBCGGGCEEEEEEEEE----EEEEEEEETTTTEEEEEET-----------
T ss_pred CcEEEEEc----------CCeEEEEEecCcccccccceeeecCCCC----cEEEEEEecCCCEEEEEEC-----------
Confidence 56788865 34899999988654321 111111 1457899998888887610
Q ss_pred CCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCC-ceeEcC-CC-ccccccccCCCCcEEEEEee
Q 002194 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEIG-PP-AVYTSLDPSPDEKYILISSI 351 (954)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G-~~~~l~-~~-~~~~~~~~SpDGk~l~~~s~ 351 (954)
....|++++++| ....+. .. .....++++|+++.|+++..
T Consensus 56 -------------------------------------~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~ 98 (267)
T 1npe_A 56 -------------------------------------SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS 98 (267)
T ss_dssp -------------------------------------TTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET
T ss_pred -------------------------------------CCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC
Confidence 234688899844 333333 23 45677889999888887763
Q ss_pred cCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccC
Q 002194 352 HRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTP 431 (954)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~ 431 (954)
. ...|++++.++...+.+.... ...+..++++|++..+++. +.. ..
T Consensus 99 ~------------~~~I~~~~~~g~~~~~~~~~~------------~~~P~~i~vd~~~g~lyv~-~~~---------~~ 144 (267)
T 1npe_A 99 Q------------LDRIEVAKMDGTQRRVLFDTG------------LVNPRGIVTDPVRGNLYWT-DWN---------RD 144 (267)
T ss_dssp T------------TTEEEEEETTSCSCEEEECSS------------CSSEEEEEEETTTTEEEEE-ECC---------SS
T ss_pred C------------CCEEEEEEcCCCCEEEEEECC------------CCCccEEEEeeCCCEEEEE-ECC---------CC
Confidence 2 237888898876544443211 0234578999987655443 221 11
Q ss_pred CCeEEEEecCCCCCCCceEEeec-ccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 432 RDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 432 ~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
...|++++. ++...+.+... .....++++++|++.|+++.... .+|++++.++.
T Consensus 145 ~~~I~~~~~---dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~---~~I~~~~~~g~ 199 (267)
T 1npe_A 145 NPKIETSHM---DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT---HRAECLNPAQP 199 (267)
T ss_dssp SCEEEEEET---TSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT---TEEEEEETTEE
T ss_pred CcEEEEEec---CCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCC---CEEEEEecCCC
Confidence 357888885 55555555322 23456789999999988875443 47999998863
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.5e-06 Score=92.70 Aligned_cols=223 Identities=9% Similarity=-0.066 Sum_probs=120.8
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce-eecc---c-CC
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLF---Q-SP 238 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt---~-~~ 238 (954)
.|+++++.+ +....+.. ...... ++|+|||+.|+.+.. ++...||+++.+++.. +.+. . ..
T Consensus 153 ~I~~id~~~----g~~~~~~~--~~~~~~-ia~~~~g~~l~~~d~-------~~~~~I~~~d~~~~~~~~~~g~~~~~~~ 218 (409)
T 3hrp_A 153 RVRLISVDD----NKVTTVHP--GFKGGK-PAVTKDKQRVYSIGW-------EGTHTVYVYMKASGWAPTRIGQLGSTFS 218 (409)
T ss_dssp EEEEEETTT----TEEEEEEE--TCCBCB-CEECTTSSEEEEEBS-------STTCEEEEEEGGGTTCEEEEEECCTTSC
T ss_pred cEEEEECCC----CEEEEeec--cCCCCc-eeEecCCCcEEEEec-------CCCceEEEEEcCCCceeEEeeeccchhc
Confidence 678888743 44444432 122334 999999998777542 2233899999887654 2331 1 11
Q ss_pred CccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEE
Q 002194 239 DIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (954)
Q Consensus 239 ~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~ 318 (954)
. ....++++|++..|+++ . ....|++
T Consensus 219 ~-----~p~~iav~p~~g~lyv~-d------------------------------------------------~~~~I~~ 244 (409)
T 3hrp_A 219 G-----KIGAVALDETEEWLYFV-D------------------------------------------------SNKNFGR 244 (409)
T ss_dssp S-----CCCBCEECTTSSEEEEE-C------------------------------------------------TTCEEEE
T ss_pred C-----CcEEEEEeCCCCeEEEE-E------------------------------------------------CCCcEEE
Confidence 1 14578899955556655 0 1235888
Q ss_pred EEe-CCceeEc----CCC-ccc--c-ccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCC---C
Q 002194 319 VSL-DGTVKEI----GPP-AVY--T-SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP---L 386 (954)
Q Consensus 319 ~~~-~G~~~~l----~~~-~~~--~-~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~---~ 386 (954)
++. ++....+ ... ... . .++|+|++..|+++... ...|+.++.++. ...+.... .
T Consensus 245 ~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~------------~~~I~~~~~~g~-~~~~~g~~~~~g 311 (409)
T 3hrp_A 245 FNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN------------LSSVYKITPDGE-CEWFCGSATQKT 311 (409)
T ss_dssp EETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT------------TTEEEEECTTCC-EEEEEECTTCCS
T ss_pred EECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC------------CCEEEEEecCCC-EEEEEeCCCCCC
Confidence 888 5554444 222 112 2 78999987777766522 237888888876 33332221 0
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec------------
Q 002194 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL------------ 454 (954)
Q Consensus 387 ~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~------------ 454 (954)
...-+ ........+..++++|||+ +|+++. .....|+++++ ..+....+...
T Consensus 312 ~~dg~-~~~~~~~~P~gia~d~dG~--lyvad~----------~~~~~I~~~~~---~~G~v~~~~g~~~~~g~~~g~~~ 375 (409)
T 3hrp_A 312 VQDGL-REEALFAQPNGMTVDEDGN--FYIVDG----------FKGYCLRKLDI---LDGYVSTVAGQVDVASQIDGTPL 375 (409)
T ss_dssp CBCEE-GGGCBCSSEEEEEECTTCC--EEEEET----------TTTCEEEEEET---TTTEEEEEEECTTCBSCCCBSTT
T ss_pred cCCCc-ccccEeCCCeEEEEeCCCC--EEEEeC----------CCCCEEEEEEC---CCCEEEEEeCCCCCCCcCCCChh
Confidence 00000 0001112356799999997 444332 02457888884 34444444332
Q ss_pred ---ccccCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 455 ---DLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 455 ---~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
-....++++++|| .|+++... + .+|++++
T Consensus 376 ~~~~~~P~giavd~~g-~lyVad~~-n--~~Ir~i~ 407 (409)
T 3hrp_A 376 EATFNYPYDICYDGEG-GYWIAEAW-G--KAIRKYA 407 (409)
T ss_dssp TCCBSSEEEEEECSSS-EEEEEEST-T--CEEEEEE
T ss_pred ceEeCCceEEEEcCCC-CEEEEECC-C--CeEEEEE
Confidence 1123457888885 34444322 2 3455554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=7.3e-06 Score=85.84 Aligned_cols=224 Identities=10% Similarity=0.036 Sum_probs=134.1
Q ss_pred ceEEEEEeCCc-ee------EcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCC
Q 002194 314 TQLVLVSLDGT-VK------EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP 385 (954)
Q Consensus 314 ~~l~~~~~~G~-~~------~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~ 385 (954)
..|++++++|. .+ .+..+ .....++|+|+++.|+++... ...|+.++.+++..+.+....
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~------------~~~I~~~~~~g~~~~~~~~~~ 77 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS------------EPSIGRASLHGGEPTTIIRQD 77 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT------------TTEEEEEESSSCCCEEEECTT
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECC------------CCEEEEEecCCCCcEEEEECC
Confidence 46888998542 22 12112 345688999999998887633 237889999877554433211
Q ss_pred CcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecc-cccCceeec
Q 002194 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWC 464 (954)
Q Consensus 386 ~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~s 464 (954)
...+..++++|++..+++. +. ..+.|++++. ++...+.+.... .....++++
T Consensus 78 ------------~~~p~~ia~d~~~~~lyv~-d~-----------~~~~I~~~~~---~g~~~~~~~~~~~~~P~~i~vd 130 (267)
T 1npe_A 78 ------------LGSPEGIALDHLGRTIFWT-DS-----------QLDRIEVAKM---DGTQRRVLFDTGLVNPRGIVTD 130 (267)
T ss_dssp ------------CCCEEEEEEETTTTEEEEE-ET-----------TTTEEEEEET---TSCSCEEEECSSCSSEEEEEEE
T ss_pred ------------CCCccEEEEEecCCeEEEE-EC-----------CCCEEEEEEc---CCCCEEEEEECCCCCccEEEEe
Confidence 0234578899987765443 22 2457888885 555555553322 345678999
Q ss_pred cCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCC
Q 002194 465 DDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNG 544 (954)
Q Consensus 465 pDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~ 544 (954)
|++..|+++..... ..+|+++++++. ....+.........+ ++++++++.|++...
T Consensus 131 ~~~g~lyv~~~~~~-~~~I~~~~~dg~--~~~~~~~~~~~~P~g------ia~d~~~~~lyv~d~--------------- 186 (267)
T 1npe_A 131 PVRGNLYWTDWNRD-NPKIETSHMDGT--NRRILAQDNLGLPNG------LTFDAFSSQLCWVDA--------------- 186 (267)
T ss_dssp TTTTEEEEEECCSS-SCEEEEEETTSC--CCEEEECTTCSCEEE------EEEETTTTEEEEEET---------------
T ss_pred eCCCEEEEEECCCC-CcEEEEEecCCC--CcEEEEECCCCCCcE------EEEcCCCCEEEEEEC---------------
Confidence 99888888754321 257999988764 233333222111112 778999888887762
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCcee
Q 002194 545 ATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (954)
Q Consensus 545 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~ 622 (954)
....|+++|++++..+.+...... . ..+.+|++.++++... ...+++++..+++..
T Consensus 187 -----~~~~I~~~~~~g~~~~~~~~~~~~-----P---------~gi~~d~~~lyva~~~---~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 187 -----GTHRAECLNPAQPGRRKVLEGLQY-----P---------FAVTSYGKNLYYTDWK---TNSVIAMDLAISKEM 242 (267)
T ss_dssp -----TTTEEEEEETTEEEEEEEEECCCS-----E---------EEEEEETTEEEEEETT---TTEEEEEETTTTEEE
T ss_pred -----CCCEEEEEecCCCceEEEecCCCC-----c---------eEEEEeCCEEEEEECC---CCeEEEEeCCCCCce
Confidence 123599999987654444321110 1 1234566677665443 346888887777543
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-07 Score=102.93 Aligned_cols=174 Identities=13% Similarity=0.093 Sum_probs=102.2
Q ss_pred HCCcEEEEcCCCCCCCCCCc-----ccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC----
Q 002194 710 ARGFAILGGPTTPIIGEGDE-----EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---- 780 (954)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~-----~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~---- 780 (954)
..+|.|+. .+..|+|.+ ...........+|+.+.++.+.. ..++.++|||+||.+|..+|.+.
T Consensus 115 ~~~~~v~~---~d~~G~g~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~-----~~p~~l~G~S~GG~vA~~~A~~l~~~~ 186 (319)
T 2hfk_A 115 QEERDFLA---VPLPGYGTGTGTGTALLPADLDTALDAQARAILRAAG-----DAPVVLLGHAGGALLAHELAFRLERAH 186 (319)
T ss_dssp TTTCCEEE---ECCTTCCBC---CBCCEESSHHHHHHHHHHHHHHHHT-----TSCEEEEEETHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEE---ecCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHhcC-----CCCEEEEEECHHHHHHHHHHHHHHHhh
Confidence 47899999 555666665 33334456666666666655421 24799999999999999999875
Q ss_pred CCcccEEEEeccCCCCCCCCC--------------CCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCC
Q 002194 781 PHLFCCGIARSGAYNRTLTPF--------------GFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGT 846 (954)
Q Consensus 781 p~~~~a~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~ 846 (954)
++.++++|++++......... .+.............|...-......++++|+|+++| .|..++
T Consensus 187 g~~v~~lvl~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvl~i~g-~D~~~~- 264 (319)
T 2hfk_A 187 GAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGRYARFLAGPRPGRSSAPVLLVRA-SEPLGD- 264 (319)
T ss_dssp SCCCSEEEEESCCCTTSCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHSCCCCCCCSCEEEEEE-SSCSSC-
T ss_pred CCCceEEEEeCCCCCCchhHHHHHHHHhhHHHHHhhccccchHHHHHHHHHHHHHHhCCCCCcCCCEEEEEc-CCCCCC-
Confidence 456899998876422100000 0000000000011111110000123678899999999 999887
Q ss_pred chHH-HHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 847 LTMQ-SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 847 ~~~~-~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
... ...+.+. ...+++++.+++ +|.....+....+.+.|.+||.+..
T Consensus 265 -~~~~~~~~~~~---~~~~~~~~~v~g-~H~~~~~e~~~~~~~~i~~~L~~~~ 312 (319)
T 2hfk_A 265 -WQEERGDWRAH---WDLPHTVADVPG-DHFTMMRDHAPAVAEAVLSWLDAIE 312 (319)
T ss_dssp -CCGGGCCCSCC---CSSCSEEEEESS-CTTHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -ccccccchhhc---CCCCCEEEEeCC-CcHHHHHHhHHHHHHHHHHHHHhcC
Confidence 544 2222111 123468888995 8974322467788888999998754
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.4e-06 Score=91.46 Aligned_cols=191 Identities=9% Similarity=-0.010 Sum_probs=110.7
Q ss_pred CCCeEEEEEeeccccCCCCceEEEEEECCCCcee-ecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCC
Q 002194 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPL 277 (954)
Q Consensus 199 DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~ 277 (954)
++++|+.+.. ....|.++|+++++.. .+..... ...+++++|| .|+++..
T Consensus 52 ~~~~lyv~~~--------~~~~v~viD~~t~~~~~~i~~~~~------p~~i~~~~~g-~lyv~~~-------------- 102 (328)
T 3dsm_A 52 RDGIGWIVVN--------NSHVIFAIDINTFKEVGRITGFTS------PRYIHFLSDE-KAYVTQI-------------- 102 (328)
T ss_dssp ETTEEEEEEG--------GGTEEEEEETTTCCEEEEEECCSS------EEEEEEEETT-EEEEEEB--------------
T ss_pred ECCEEEEEEc--------CCCEEEEEECcccEEEEEcCCCCC------CcEEEEeCCC-eEEEEEC--------------
Confidence 5666666542 2468999999988774 3422221 4578899999 5665510
Q ss_pred CCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee-EcCCCc------cccccccCCCCcEEEEE
Q 002194 278 GPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPPA------VYTSLDPSPDEKYILIS 349 (954)
Q Consensus 278 ~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-~l~~~~------~~~~~~~SpDGk~l~~~ 349 (954)
....|+++|+ +++.. .+..+. ....+++ ++++|++.
T Consensus 103 ----------------------------------~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~ 146 (328)
T 3dsm_A 103 ----------------------------------WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVN 146 (328)
T ss_dssp ----------------------------------SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEE
T ss_pred ----------------------------------CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEE
Confidence 1235888888 77543 333222 4455666 56666665
Q ss_pred eecCCcccccccCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002194 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (954)
Q Consensus 350 s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (954)
... ....|.++|+++++.. .+... ..+..+.++|||+ +++. ...+......
T Consensus 147 ~~~-----------~~~~v~viD~~t~~~~~~i~~g--------------~~p~~i~~~~dG~-l~v~-~~~~~~~~~~- 198 (328)
T 3dsm_A 147 CWS-----------YQNRILKIDTETDKVVDELTIG--------------IQPTSLVMDKYNK-MWTI-TDGGYEGSPY- 198 (328)
T ss_dssp ECT-----------TCCEEEEEETTTTEEEEEEECS--------------SCBCCCEECTTSE-EEEE-BCCBCTTCSS-
T ss_pred cCC-----------CCCEEEEEECCCCeEEEEEEcC--------------CCccceEEcCCCC-EEEE-ECCCccCCcc-
Confidence 421 1237999999866543 33221 1235688999997 3333 2111000000
Q ss_pred ccCCCeEEEEecCCCCCCCce-EEeec-ccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 429 VTPRDIIYTQQAEPVQGEGPE-ILHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 429 ~~~~~~l~~~~~~~~~g~~~~-~l~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
....+.|++++. .+++.. .+.-. ......++|+|||+.|++... .++++|++++
T Consensus 199 ~~~~~~v~~id~---~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~------~v~~~d~~t~ 254 (328)
T 3dsm_A 199 GYEAPSLYRIDA---ETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN------DIWRMPVEAD 254 (328)
T ss_dssp CBCCCEEEEEET---TTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS------SEEEEETTCS
T ss_pred ccCCceEEEEEC---CCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc------EEEEEECCCC
Confidence 011357999995 444433 33221 224677999999999887632 5899999876
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.4e-06 Score=93.83 Aligned_cols=226 Identities=10% Similarity=0.065 Sum_probs=130.3
Q ss_pred eecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCC
Q 002194 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (954)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~ 274 (954)
.+++||+.|+.... ...|.++|+.+++........... +..+.| |++.|+...
T Consensus 138 ~~~~d~~~l~~g~~---------dg~i~iwd~~~~~~~~~~~~h~~~----v~~l~~--~~~~l~sg~------------ 190 (435)
T 1p22_A 138 CLQYDDQKIVSGLR---------DNTIKIWDKNTLECKRILTGHTGS----VLCLQY--DERVIITGS------------ 190 (435)
T ss_dssp EEECCSSEEEEEES---------SSCEEEEESSSCCEEEEECCCSSC----EEEEEC--CSSEEEEEE------------
T ss_pred EEEECCCEEEEEeC---------CCeEEEEeCCCCeEEEEEcCCCCc----EEEEEE--CCCEEEEEc------------
Confidence 55669999888652 457788898888766554433322 556666 888887661
Q ss_pred CCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-ccccccccCCCCcEEEEEee
Q 002194 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKYILISSI 351 (954)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~-~~~~~~~~SpDGk~l~~~s~ 351 (954)
..+.|.++|+ +|+. ..+... ..+..+.|++ ..|+..+.
T Consensus 191 -------------------------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~ 231 (435)
T 1p22_A 191 -------------------------------------SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSK 231 (435)
T ss_dssp -------------------------------------TTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEET
T ss_pred -------------------------------------CCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeC
Confidence 1234777788 6643 334333 6677788874 46666653
Q ss_pred cCCcccccccCCCCcceEEEeccCceEEEe-ccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccc
Q 002194 352 HRPYSFIVPCGRFPRQVGVWTTDGIFVREL-CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVT 430 (954)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l-~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~ 430 (954)
+ +.+.+||+.++..... .... +....+..+.| ||+.++.. +
T Consensus 232 d-------------g~i~vwd~~~~~~~~~~~~~~----------~~~~~v~~~~~--~~~~l~s~-------------~ 273 (435)
T 1p22_A 232 D-------------RSIAVWDMASPTDITLRRVLV----------GHRAAVNVVDF--DDKYIVSA-------------S 273 (435)
T ss_dssp T-------------SCEEEEECSSSSCCEEEEEEC----------CCSSCEEEEEE--ETTEEEEE-------------E
T ss_pred C-------------CcEEEEeCCCCCCceeeeEec----------CCCCcEEEEEe--CCCEEEEE-------------e
Confidence 3 3899999985432111 1100 11123345666 67755554 3
Q ss_pred CCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCC
Q 002194 431 PRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510 (954)
Q Consensus 431 ~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~ 510 (954)
..+.|.+|++ .++.....+..+...+..+.| +++.|+..+.++ .|.++|+.++ +.......+...+.
T Consensus 274 ~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg----~i~iwd~~~~--~~~~~~~~h~~~v~--- 340 (435)
T 1p22_A 274 GDRTIKVWNT--STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN----TIRLWDIECG--ACLRVLEGHEELVR--- 340 (435)
T ss_dssp TTSEEEEEET--TTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTS----CEEEEETTTC--CEEEEECCCSSCEE---
T ss_pred CCCeEEEEEC--CcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCC----eEEEEECCCC--CEEEEEeCCcCcEE---
Confidence 4568899996 233333445555555666666 567777665443 3556666664 33333333332222
Q ss_pred CCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCC
Q 002194 511 GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (954)
Q Consensus 511 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 563 (954)
....||++++.... ...|.+||+.+++
T Consensus 341 -----~~~~~~~~l~sg~~---------------------dg~i~vwd~~~~~ 367 (435)
T 1p22_A 341 -----CIRFDNKRIVSGAY---------------------DGKIKVWDLVAAL 367 (435)
T ss_dssp -----EEECCSSEEEEEET---------------------TSCEEEEEHHHHT
T ss_pred -----EEEecCCEEEEEeC---------------------CCcEEEEECCCCC
Confidence 23347887776652 2248899986554
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=3.3e-06 Score=89.73 Aligned_cols=158 Identities=8% Similarity=-0.065 Sum_probs=79.2
Q ss_pred ccccccccCC---CCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeec
Q 002194 332 AVYTSLDPSP---DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (954)
Q Consensus 332 ~~~~~~~~Sp---DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~ws 407 (954)
.....++||| ||+.|+-.+.+ +.|.|||+++++ .+.+..+... ...+..++||
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D-------------~TIkIWDl~TGk~l~tL~g~~~~----------v~~v~~vafS 235 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIM-------------NNIVIWNLKTGQLLKKMHIDDSY----------QASVCHKAYS 235 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETT-------------SEEEEEETTTCCEEEEEECCC-------------CCCEEEEEE
T ss_pred CceeeEEeeccCCCCceEEEecCC-------------CcEEEEECCCCcEEEEEcCCCcc----------eeeeEEEEEC
Confidence 4455678888 77888888744 389999999654 5666432110 0233456899
Q ss_pred cCCCCceEEEEeccCCCcc-ccccCCCeEEEEecCCCCCCCc-eEEe--eccccc-CceeeccCCceEEEEEeccccceE
Q 002194 408 SDKPSTLYWAETQDGGDAK-VEVTPRDIIYTQQAEPVQGEGP-EILH--KLDLRY-GGISWCDDSLALVYESWYKTRRTR 482 (954)
Q Consensus 408 pDg~~i~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~g~~~-~~l~--~~~~~~-~~~~~spDg~~l~~~~~~~~~~~~ 482 (954)
|||+.++.... +.+.+. ...+....+.+|+. .+++. ..+. -.++.. ..+..+.+|..++..+.++.
T Consensus 236 pdG~~lvs~s~--~~~~w~laSGs~D~tIklWd~---~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgT---- 306 (356)
T 2w18_A 236 EMGLLFIVLSH--PCAKESESLRSPVFQLIVINP---KTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGT---- 306 (356)
T ss_dssp ETTEEEEEEC--------------CCEEEEEEET---TTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSC----
T ss_pred CCCCEEEEecc--CCCcceeeccCCCcEEEEEEC---CCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCc----
Confidence 99987665421 110010 11123446777875 33332 2111 011111 11122223445555444432
Q ss_pred EEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 483 TWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 483 l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
|.+.|+.++ +.......+...+.. .++|||||++|+...
T Consensus 307 IkIWDl~tG--k~l~tL~gH~~~vvs-----~vafSPDG~~LaSGS 345 (356)
T 2w18_A 307 IAIWDLLLG--QCTALLPPVSDQHWS-----FVKWSGTDSHLLAGQ 345 (356)
T ss_dssp EEEEETTTC--SEEEEECCC--CCCC-----EEEECSSSSEEEEEC
T ss_pred EEEEECCCC--cEEEEecCCCCCeEE-----EEEECCCCCEEEEEE
Confidence 555566665 323333222222211 168999999998776
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=2e-06 Score=93.85 Aligned_cols=281 Identities=9% Similarity=-0.092 Sum_probs=132.5
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccC-CCCceEEEEEECCCCceeecccCC-Ccc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDS-SSSKLRVWVADVDTGKARPLFQSP-DIY 241 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~-~~~~~~l~~~d~~~g~~~~lt~~~-~~~ 241 (954)
.+.++|..+ .+ .+..++.+... ++.+||||++|+.+........ +.....|.++|+.+++...-...+ ...
T Consensus 47 ~vsvID~~t----~~--v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGC----GV--TLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEETTT----TE--EEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred eEEEEECCC----Ce--EEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence 677888643 22 22223333333 7999999999988763211100 123578999999998765443222 000
Q ss_pred c--cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceee--ccCCceeeechh--hhhccCcccc--cccccccc
Q 002194 242 L--NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQS--NEKRDIIQVRTF--QDLLKDEYDE--DLFDYYAT 313 (954)
Q Consensus 242 ~--~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~~--~d~l~~~~d~--~~~~~~~~ 313 (954)
+ ......+++||||++++++....... +.- -+-. . .+.+ .+......++ ..+.....
T Consensus 120 ~~~g~~P~~ia~SpDGk~lyVan~~~~~~------------v~V~~iD~~-t--v~~i~v~~~~~~~p~g~~~~~~~~~d 184 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLLFFLFGSSAA------------AGLSVPGAS-D--DQLTKSASCFHIHPGAAATHYLGSCP 184 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEECSSSCE------------EEEEETTTE-E--EEEEECSSCCCCEEEETTEEECCCCT
T ss_pred cccCCCcceEEEcCCCCEEEEEccCCCCe------------EEEEEEchh-h--ceEEECCCceEEccCCCeEEEEEcCC
Confidence 0 00134789999999999872110000 000 0000 0 0000 0000000000 00111122
Q ss_pred ceEEEEEe-C-----CceeEc-CCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCC
Q 002194 314 TQLVLVSL-D-----GTVKEI-GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP 385 (954)
Q Consensus 314 ~~l~~~~~-~-----G~~~~l-~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~ 385 (954)
..+..+++ + |+.... +.. .--..+..++|++.++|.+. +.+++.|+.++..+.+....
T Consensus 185 g~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~--------------~~V~viD~~~~~~~v~~~~~ 250 (368)
T 1mda_H 185 ASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA--------------SSILQGDIPAAGATMKAAID 250 (368)
T ss_dssp TSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS--------------SCCEEEECCSSCCEEECCCC
T ss_pred CCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC--------------CEEEEEECCCCcceEEEEEE
Confidence 33444555 3 221100 000 00001112677777777763 27888888754433332221
Q ss_pred CcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEeecccccCceeec
Q 002194 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWC 464 (954)
Q Consensus 386 ~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~s 464 (954)
..............+...+.++|||+++++......+. . . ...+.+.++|+ .+.+. ..+.- .....+++|+
T Consensus 251 ~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~-~-~--~~~~~~~ViD~---~t~~vv~~i~v-g~~p~gi~~s 322 (368)
T 1mda_H 251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS-C-L--AAAENTSSVTA---SVGQTSGPISN-GHDSDAIIAA 322 (368)
T ss_dssp SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSC-T-T--SCEEEEEEEES---SSCCEEECCEE-EEEECEEEEC
T ss_pred eccccccccccccCcceeeEEcCCCCEEEEEeccccCc-c-c--ccCCCEEEEEC---CCCeEEEEEEC-CCCcceEEEC
Confidence 11000000000112233478999999876653211000 0 0 00124558885 43333 33332 2257889999
Q ss_pred cCCceEEEEEe-ccccceEEEEEcCCCC
Q 002194 465 DDSLALVYESW-YKTRRTRTWVISPGSK 491 (954)
Q Consensus 465 pDg~~l~~~~~-~~~~~~~l~~~d~~~~ 491 (954)
|||++++++.+ .. ..|.++|+.+.
T Consensus 323 ~Dg~~l~va~~~~~---~~VsVID~~t~ 347 (368)
T 1mda_H 323 QDGASDNYANSAGT---EVLDIYDAASD 347 (368)
T ss_dssp CSSSCEEEEEETTT---TEEEEEESSSC
T ss_pred CCCCEEEEEccCCC---CeEEEEECCCC
Confidence 99999988876 34 46999999885
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=5.3e-08 Score=113.36 Aligned_cols=128 Identities=17% Similarity=0.126 Sum_probs=84.1
Q ss_pred EEEEEEcCCCCCCC-CCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHC-CcEEEEcCCCCC-CCCCC
Q 002194 652 LSATLYLPPGYDPS-KDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-GFAILGGPTTPI-IGEGD 728 (954)
Q Consensus 652 l~~~l~~P~~~~~~-~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G~~V~~~~~~~~-~G~G~ 728 (954)
+...+|.|...... ...++|+|||+|||.|..+... .+. ...|+++ |++|+..+|+-. .|+..
T Consensus 112 L~l~v~~P~~~~~~~~~~~~Pv~v~iHGGg~~~g~~~--------~~~------~~~la~~~~~vvv~~~YRl~~~Gfl~ 177 (574)
T 3bix_A 112 LYLNIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTGN--------LYD------GSVLASYGNVIVITVNYRLGVLGFLS 177 (574)
T ss_dssp CEEEEEEEC--------CCEEEEEECCCSSSSSCCGG--------GSC------CHHHHHHHTCEEEEECCCCHHHHHCC
T ss_pred CEEEEEECCCCCcCCCCCCCcEEEEECCCcccCCCCC--------ccC------chhhhccCCEEEEEeCCcCcccccCc
Confidence 55678888753211 1235899999999976654321 121 1245654 699999888632 12211
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhCC---CcccEEEEeccC
Q 002194 729 EEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGA 793 (954)
Q Consensus 729 ~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~ 793 (954)
.......+...+.|+.+|++|+.++ ...||++|.|+|+|+||.++..++.... .+|+.+|+.+|.
T Consensus 178 ~~~~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg~ 248 (574)
T 3bix_A 178 TGDQAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSGT 248 (574)
T ss_dssp CSSSSCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESCC
T ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcCC
Confidence 1111112245689999999999986 2379999999999999999998886543 569999998863
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.3e-06 Score=90.68 Aligned_cols=230 Identities=11% Similarity=0.069 Sum_probs=128.4
Q ss_pred ceEEEEccCCCCCCce-eeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCc-c
Q 002194 164 GIGIHQLFPDGKLGQE-IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI-Y 241 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~-~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~-~ 241 (954)
.|.++|..+ ++. ..+. .......++++||| +|+.+.. ....|+++|+++++.......+.. .
T Consensus 65 ~v~viD~~t----~~~~~~i~---~~~~p~~i~~~~~g-~lyv~~~--------~~~~v~~iD~~t~~~~~~i~~g~~~~ 128 (328)
T 3dsm_A 65 VIFAIDINT----FKEVGRIT---GFTSPRYIHFLSDE-KAYVTQI--------WDYRIFIINPKTYEITGYIECPDMDM 128 (328)
T ss_dssp EEEEEETTT----CCEEEEEE---CCSSEEEEEEEETT-EEEEEEB--------SCSEEEEEETTTTEEEEEEECTTCCT
T ss_pred EEEEEECcc----cEEEEEcC---CCCCCcEEEEeCCC-eEEEEEC--------CCCeEEEEECCCCeEEEEEEcCCccc
Confidence 688888753 332 3443 23356778899998 5544321 256899999998876543222220 0
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
.......+++ +++.|+++.. . ....|.++|+
T Consensus 129 ~~~~p~~i~~--~~~~lyv~~~--------------------------------------~---------~~~~v~viD~ 159 (328)
T 3dsm_A 129 ESGSTEQMVQ--YGKYVYVNCW--------------------------------------S---------YQNRILKIDT 159 (328)
T ss_dssp TTCBCCCEEE--ETTEEEEEEC--------------------------------------T---------TCCEEEEEET
T ss_pred cCCCcceEEE--ECCEEEEEcC--------------------------------------C---------CCCEEEEEEC
Confidence 0001345666 4555665410 0 1245888998
Q ss_pred -CCcee-EcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCcccccccc
Q 002194 322 -DGTVK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (954)
Q Consensus 322 -~G~~~-~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~ 399 (954)
+++.. .+........+.++|||+ +++........ .++..-...|+++|.+++++......+.. .
T Consensus 160 ~t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~~~--~~~~~~~~~v~~id~~t~~v~~~~~~~~g-----------~ 225 (328)
T 3dsm_A 160 ETDKVVDELTIGIQPTSLVMDKYNK-MWTITDGGYEG--SPYGYEAPSLYRIDAETFTVEKQFKFKLG-----------D 225 (328)
T ss_dssp TTTEEEEEEECSSCBCCCEECTTSE-EEEEBCCBCTT--CSSCBCCCEEEEEETTTTEEEEEEECCTT-----------C
T ss_pred CCCeEEEEEEcCCCccceEEcCCCC-EEEEECCCccC--CccccCCceEEEEECCCCeEEEEEecCCC-----------C
Confidence 77543 343334556788999998 44444221100 00001124799999987665432221110 1
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCce--E-EeecccccCceeeccCCceEEEEEec
Q 002194 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE--I-LHKLDLRYGGISWCDDSLALVYESWY 476 (954)
Q Consensus 400 g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~--~-l~~~~~~~~~~~~spDg~~l~~~~~~ 476 (954)
.+..++|+|||+.+++. .. .|+++|. ++++.. . +.........++++|++..|+.+...
T Consensus 226 ~p~~la~~~d~~~lyv~-------------~~--~v~~~d~---~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~ 287 (328)
T 3dsm_A 226 WPSEVQLNGTRDTLYWI-------------NN--DIWRMPV---EADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAI 287 (328)
T ss_dssp CCEEEEECTTSCEEEEE-------------SS--SEEEEET---TCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECT
T ss_pred CceeEEEecCCCEEEEE-------------cc--EEEEEEC---CCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccc
Confidence 34679999999977665 11 7889985 444331 1 11112345678999987777776411
Q ss_pred c-ccceEEEEEcCCC
Q 002194 477 K-TRRTRTWVISPGS 490 (954)
Q Consensus 477 ~-~~~~~l~~~d~~~ 490 (954)
+ .....|++++.++
T Consensus 288 ~y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 288 DYQQQGIVYRYSPQG 302 (328)
T ss_dssp TSSSEEEEEEECTTC
T ss_pred ccccCCEEEEECCCC
Confidence 0 1125788888873
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.3e-06 Score=95.42 Aligned_cols=151 Identities=13% Similarity=0.133 Sum_probs=91.6
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCC-----ce------eecccCCCccccccccceeEecC-Ce
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-----KA------RPLFQSPDIYLNAIFDNFVWVNN-ST 256 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g-----~~------~~lt~~~~~~~~~~~~~~~wspD-G~ 256 (954)
..+...+|||||++|+..... +.....|.++|++++ +. ..+.... ...+..++|+|+ ++
T Consensus 93 ~~v~~l~~spdg~~lav~~~s-----gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h----~~~V~~v~~~p~~~~ 163 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMS-----SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDA----GGMVIDMKWNPTVPS 163 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEE-----TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSG----GGSEEEEEECSSCTT
T ss_pred CcccEEEEcCCCCEEEEEEec-----cCCCceEEEEEccccccCCcCCcceeeeeeccCCC----CCceEEEEECCCCCC
Confidence 358889999999999863210 334567778887653 11 1111111 222778999998 67
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE-cCCC-cc
Q 002194 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-AV 333 (954)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~-l~~~-~~ 333 (954)
.|+... ....|.++|+ ++.... .... ..
T Consensus 164 ~las~s-------------------------------------------------~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 164 MVAVCL-------------------------------------------------ADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp EEEEEE-------------------------------------------------TTSCEEEEEESSSEEEEEEECGGGC
T ss_pred EEEEEE-------------------------------------------------CCCeEEEEEcCCCcceeeccCCCCc
Confidence 777551 1234677787 553221 2222 56
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i 413 (954)
+..++|||||++|+..+.+ +.+.+||+++...+.+........ .....+..+.|++++..+
T Consensus 195 v~~v~wspdg~~lasgs~d-------------g~v~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~v~w~~~~~~l 255 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQN-------------GTVVQYLPTLQEKKVIPCPPFYES------DHPVRVLDVLWIGTYVFA 255 (434)
T ss_dssp EEEEEECTTSSCEEEEETT-------------SCEEEECTTCCEEEEECCCTTCCT------TSCEEEEEEEEEETTEEE
T ss_pred eeEEEEcCCCCEEEEEcCC-------------CcEEEEccCCcccccccCCcccCC------CCceeEEEEEEecCceEE
Confidence 7889999999999988743 389999998555444433221100 001245678999988655
Q ss_pred eEE
Q 002194 414 LYW 416 (954)
Q Consensus 414 ~~~ 416 (954)
+..
T Consensus 256 ~~~ 258 (434)
T 2oit_A 256 IVY 258 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-06 Score=95.71 Aligned_cols=105 Identities=6% Similarity=0.040 Sum_probs=68.7
Q ss_pred ccccccccCCC-CcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPD-EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpD-Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..+..++|+|+ ++.|+..+.+ +.+.+||+..+....... +....+..++|+|||
T Consensus 150 ~~V~~v~~~p~~~~~las~s~D-------------g~v~iwD~~~~~~~~~~~------------~~~~~v~~v~wspdg 204 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVCLAD-------------GSIAVLQVTETVKVCATL------------PSTVAVTSVCWSPKG 204 (434)
T ss_dssp GSEEEEEECSSCTTEEEEEETT-------------SCEEEEEESSSEEEEEEE------------CGGGCEEEEEECTTS
T ss_pred CceEEEEECCCCCCEEEEEECC-------------CeEEEEEcCCCcceeecc------------CCCCceeEEEEcCCC
Confidence 66788999998 6777776633 389999998663321111 111345789999999
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-------ccccCceeeccCCceEEEEEecc
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-------DLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-------~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
+.|+.. +..+.|.+|+. .+.....+... ...+..+.|++++..++.....+
T Consensus 205 ~~lasg-------------s~dg~v~iwd~---~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 205 KQLAVG-------------KQNGTVVQYLP---TLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp SCEEEE-------------ETTSCEEEECT---TCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred CEEEEE-------------cCCCcEEEEcc---CCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence 988766 34557889986 43323333222 12567799999998876655443
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.9e-07 Score=93.47 Aligned_cols=162 Identities=12% Similarity=0.026 Sum_probs=90.4
Q ss_pred HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC---CCcccE
Q 002194 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFCC 786 (954)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~---p~~~~a 786 (954)
..+|.|+..+ ..|++. ..+++.+.++.+ . ...++.++||||||.+|..++.+. ++.+++
T Consensus 46 ~~~~~v~~~d---~~g~~~----------~~~~~~~~i~~~---~--~~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~ 107 (244)
T 2cb9_A 46 NHKAAVYGFH---FIEEDS----------RIEQYVSRITEI---Q--PEGPYVLLGYSAGGNLAFEVVQAMEQKGLEVSD 107 (244)
T ss_dssp TTTSEEEEEC---CCCSTT----------HHHHHHHHHHHH---C--SSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCceEEEEc---CCCHHH----------HHHHHHHHHHHh---C--CCCCEEEEEECHhHHHHHHHHHHHHHcCCCccE
Confidence 4689999944 444432 234444444433 1 125799999999999999998764 467888
Q ss_pred EEEeccCCCCCCCC-CCCcccc----chh----h-hcHHHHHhcCc-ccccCCCCCCEEEEEeC--CCCCCCCchHHHHH
Q 002194 787 GIARSGAYNRTLTP-FGFQNED----RTL----W-EATSTYVEMSP-FMSANKLKKPILLVHGE--EDNNSGTLTMQSDR 853 (954)
Q Consensus 787 ~v~~~~~~~~~~~~-~~~~~~~----~~~----~-~~~~~~~~~sp-~~~~~~~~~P~Lii~G~--~D~~v~~~~~~~~~ 853 (954)
+|.+++........ ....... ... + .....+..+.. .....++++|+++++|+ .|.. + ......
T Consensus 108 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvl~i~g~~~~D~~-~--~~~~~~ 184 (244)
T 2cb9_A 108 FIIVDAYKKDQSITADTENDDSAAYLPEAVRETVMQKKRCYQEYWAQLINEGRIKSNIHFIEAGIQTETS-G--AMVLQK 184 (244)
T ss_dssp EEEESCCCCCSCCCCC-------CCSCHHHHHHHTHHHHHHHHHHHHCCCCSCBSSEEEEEECSBCSCCC-H--HHHTTS
T ss_pred EEEEcCCCCcccccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCEEEEEccCccccc-c--ccchhH
Confidence 88887643210000 0000000 000 0 00011111111 12346788999999999 8863 3 333222
Q ss_pred HHHHHHhCCCcEEEEEeCCCCC--cCCCcccHHHHHHHHHHHHHHh
Q 002194 854 FFNALKGHGALCRLVILPFESH--GYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H--~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
+.+ ....+++++.+|+ +| .+ ..+....+.+.|.+||.+.
T Consensus 185 w~~---~~~~~~~~~~i~g-gH~~~~-~~~~~~~~~~~i~~~L~~~ 225 (244)
T 2cb9_A 185 WQD---AAEEGYAEYTGYG-AHKDML-EGEFAEKNANIILNILDKI 225 (244)
T ss_dssp SGG---GBSSCEEEEECSS-BGGGTT-SHHHHHHHHHHHHHHHHTC
T ss_pred HHH---hcCCCCEEEEecC-ChHHHc-ChHHHHHHHHHHHHHHhcC
Confidence 211 1123589999997 89 44 3455667777788887654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.2e-06 Score=90.78 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=65.9
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~ 412 (954)
..+++++||+..|+++... ...|.+|+.+ |+..+.+...... .++..++|+| |
T Consensus 198 p~gia~d~~~g~l~v~d~~------------~~~I~~~~~~~G~~~~~~~~~~~~-----------~~~~~~~~~p-g-- 251 (329)
T 3fvz_A 198 PHSLALVPHLDQLCVADRE------------NGRIQCFKTDTKEFVREIKHASFG-----------RNVFAISYIP-G-- 251 (329)
T ss_dssp EEEEEEETTTTEEEEEETT------------TTEEEEEETTTCCEEEEECCTTTT-----------TCEEEEEEET-T--
T ss_pred CcEEEEECCCCEEEEEECC------------CCEEEEEECCCCcEEEEEeccccC-----------CCcceeeecC-C--
Confidence 5678999996666665522 2379999998 5555555432111 2345678888 3
Q ss_pred ceEEEEeccCCCccccccCCCeEEEEecCCCCCCCce-EEe---ecccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILH---KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~-~l~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
++|..+. ... +.......+++++. ..++.. .+. .......+++++||| .|+.+...+ .+|+++++
T Consensus 252 ~~~~~~g---~~~-v~~~~~~~v~~~~~---~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~---~~I~~~~~ 320 (329)
T 3fvz_A 252 FLFAVNG---KPY-FGDQEPVQGFVMNF---SSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHT---NTVWKFTL 320 (329)
T ss_dssp EEEEEEC---CCC-TTCSCCCCEEEEET---TTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSS---CCEEEEEE
T ss_pred EEEEeCC---CEE-eccCCCcEEEEEEc---CCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCC---CEEEEEeC
Confidence 3444221 110 11123457888885 334433 322 122335678999999 555553333 34666665
Q ss_pred CC
Q 002194 489 GS 490 (954)
Q Consensus 489 ~~ 490 (954)
++
T Consensus 321 ~~ 322 (329)
T 3fvz_A 321 TE 322 (329)
T ss_dssp EE
T ss_pred Cc
Confidence 44
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.50 E-value=4.1e-06 Score=95.16 Aligned_cols=260 Identities=11% Similarity=-0.043 Sum_probs=131.7
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceee-c-CCCCeEEEEEeec-----c----ccCCCCceEEEEEECCCCcee
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTW-S-QDGKHLAFSIRID-----A----EDSSSSKLRVWVADVDTGKAR 232 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~w-S-PDG~~iaf~~~~~-----~----~~~~~~~~~l~~~d~~~g~~~ 232 (954)
.|.+.++.. .+..++..++.+......++ + |||++|+...+.. + .........+-++|.++.+..
T Consensus 113 rVavIdl~t----~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~ 188 (595)
T 1fwx_A 113 RVARVRCDV----MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVA 188 (595)
T ss_dssp EEEEEETTT----TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEE
T ss_pred EEEEEECCC----ceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEE
Confidence 577888744 44444445665555566666 5 9999985543210 0 011233567889999987653
Q ss_pred ecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCC----ceeeec-hhhhhccCcccccc
Q 002194 233 PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKR----DIIQVR-TFQDLLKDEYDEDL 307 (954)
Q Consensus 233 ~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~r-~~~d~l~~~~d~~~ 307 (954)
.-...+.. ...++.+|||+++|++......... +...... ..+..+ ..... -.+++.
T Consensus 189 ~qI~Vgg~-----pd~~~~spdGk~~~vt~~~se~~~~----------i~~~~~~~~d~v~V~~~~~~~~~---v~~Gk~ 250 (595)
T 1fwx_A 189 WQVLVSGN-----LDNCDADYEGKWAFSTSYNSEKGMT----------LPEMTAAEMDHIVVFNIAEIEKA---IAAGDY 250 (595)
T ss_dssp EEEEESSC-----CCCEEECSSSSEEEEEESCTTCCSS----------HHHHTCCSEEEEEEEEHHHHHHH---HHHTCS
T ss_pred EEEEeCCC-----ccceEECCCCCEEEEEecCcccCcc----------hhhccccccceEEEeeccceeEe---ccCCCe
Confidence 22221121 4578899999999988433221100 0000000 000000 00000 011111
Q ss_pred ccccccceEEEEEe-C--Cc--eeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEec
Q 002194 308 FDYYATTQLVLVSL-D--GT--VKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELC 382 (954)
Q Consensus 308 ~~~~~~~~l~~~~~-~--G~--~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~ 382 (954)
.+ -..+.++|. + +. ...+..+.....+.+|||||+++.+.... ..+.++|++..+.. .
T Consensus 251 -~~--i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s------------~~VsVid~~~~~~~--~ 313 (595)
T 1fwx_A 251 -QE--LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLS------------PTVTVLDVTRFDAV--F 313 (595)
T ss_dssp -EE--ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTS------------SBEEEEEGGGHHHH--H
T ss_pred -eE--ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCC------------CeEEEEECcccccc--c
Confidence 11 134778888 5 42 23444335566789999999998876433 38899998843200 0
Q ss_pred cCCCc-ccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCC----CCCC-ceEEe--ec
Q 002194 383 DLPLA-EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV----QGEG-PEILH--KL 454 (954)
Q Consensus 383 ~~~~~-~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~g~~-~~~l~--~~ 454 (954)
..... ..........-.|++.++|+||| .+|.+... .++|.+|+++.. .|.+ ...+. ..
T Consensus 314 ~~~l~~~~~v~~~v~vG~gP~h~aF~~dG--~aY~t~~l-----------dsqV~kwdi~~a~~~~~g~~~~~vi~kidV 380 (595)
T 1fwx_A 314 YENADPRSAVVAEPELGLGPLHTAFDGRG--NAYTSLFL-----------DSQVVKWNIEDAIRAYAGEKVDPIKDKLDV 380 (595)
T ss_dssp HSCCCGGGGEEECCBCCSCEEEEEECTTS--EEEEEETT-----------TTEEEEEEHHHHHHHHHTCSCCCEEEEEEC
T ss_pred ccccCcccceEEEcCCCCCcceEEECCCC--eEEEEEec-----------CCcEEEEEhhHhhhhhcccccceeEEEeec
Confidence 00000 00000000122467889999999 46664433 346777876220 1111 11221 11
Q ss_pred ccc------cCceeeccCCceEEEEEe
Q 002194 455 DLR------YGGISWCDDSLALVYESW 475 (954)
Q Consensus 455 ~~~------~~~~~~spDg~~l~~~~~ 475 (954)
... ..+...+|||++|+....
T Consensus 381 ~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 381 HYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp SSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred ccccccceeccceEeCCCCCEEEEcCC
Confidence 111 134677999999977643
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.2e-05 Score=87.76 Aligned_cols=201 Identities=10% Similarity=0.021 Sum_probs=120.3
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
....++|+|||+ |+++. .....|++++++++....+...... .. ++|+|||+.|+++..
T Consensus 132 ~P~~la~d~~g~-lyv~d--------~~~~~I~~id~~~g~~~~~~~~~~~-----~~-ia~~~~g~~l~~~d~------ 190 (409)
T 3hrp_A 132 YMWGIAAVGNNT-VLAYQ--------RDDPRVRLISVDDNKVTTVHPGFKG-----GK-PAVTKDKQRVYSIGW------ 190 (409)
T ss_dssp CEEEEEECSTTE-EEEEE--------TTTTEEEEEETTTTEEEEEEETCCB-----CB-CEECTTSSEEEEEBS------
T ss_pred CceEEEEeCCCC-EEEEe--------cCCCcEEEEECCCCEEEEeeccCCC-----Cc-eeEecCCCcEEEEec------
Confidence 456678999997 55542 1357899999998887766543322 33 899999998887610
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEc----C-CCccccccccCCC
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEI----G-PPAVYTSLDPSPD 342 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l----~-~~~~~~~~~~SpD 342 (954)
. +...|+.++. ++. .+.+ . ......+++++|+
T Consensus 191 ---------------~--------------------------~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~ 229 (409)
T 3hrp_A 191 ---------------E--------------------------GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDET 229 (409)
T ss_dssp ---------------S--------------------------TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTT
T ss_pred ---------------C--------------------------CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCC
Confidence 0 1125888888 443 2333 2 2255678899997
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCcc-ceeeccCCCCceEEEEecc
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMR-SINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~-~~~wspDg~~i~~~~~~~~ 421 (954)
+..|++.. . .+.|+.++.+++....+........ ....+. .++|+|++..+++. +
T Consensus 230 ~g~lyv~d-~------------~~~I~~~d~~~~~~~~~~~~~~~g~-------~~~~P~~~ia~~p~~g~lyv~-d--- 285 (409)
T 3hrp_A 230 EEWLYFVD-S------------NKNFGRFNVKTQEVTLIKQLELSGS-------LGTNPGPYLIYYFVDSNFYMS-D--- 285 (409)
T ss_dssp SSEEEEEC-T------------TCEEEEEETTTCCEEEEEECCCCSC-------CCCSSCCEEEEETTTTEEEEE-E---
T ss_pred CCeEEEEE-C------------CCcEEEEECCCCCEEEEecccccCC-------CCCCccccEEEeCCCCEEEEE-e---
Confidence 66777743 2 2378999998776544422111100 001123 79999976655443 2
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCceEEeecc---------------cccCceeeccCCceEEEEEeccccceEEEEE
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD---------------LRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~---------------~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (954)
...+.|++++. ++. ...+.... ....+++++|||+ |+++....+ .+|+++
T Consensus 286 --------~~~~~I~~~~~---~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~--~~I~~~ 350 (409)
T 3hrp_A 286 --------QNLSSVYKITP---DGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKG--YCLRKL 350 (409)
T ss_dssp --------TTTTEEEEECT---TCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTT--CEEEEE
T ss_pred --------CCCCEEEEEec---CCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCC--CEEEEE
Confidence 22457888874 433 33332221 1245689999998 555532033 578999
Q ss_pred cCCCC
Q 002194 487 SPGSK 491 (954)
Q Consensus 487 d~~~~ 491 (954)
++.++
T Consensus 351 ~~~~G 355 (409)
T 3hrp_A 351 DILDG 355 (409)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 96554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-05 Score=82.78 Aligned_cols=193 Identities=8% Similarity=-0.060 Sum_probs=111.5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
....++++|||+ |+++. . ...|++++.+++....+....... ...+++++||+ |+++..
T Consensus 68 ~p~~i~~~~~g~-l~v~~-------~--~~~i~~~d~~~~~~~~~~~~~~~~----p~~i~~~~~g~-l~v~~~------ 126 (270)
T 1rwi_B 68 QPQGLAVDGAGT-VYVTD-------F--NNRVVTLAAGSNNQTVLPFDGLNY----PEGLAVDTQGA-VYVADR------ 126 (270)
T ss_dssp SCCCEEECTTCC-EEEEE-------T--TTEEEEECTTCSCCEECCCCSCSS----EEEEEECTTCC-EEEEEG------
T ss_pred CcceeEECCCCC-EEEEc-------C--CCEEEEEeCCCceEeeeecCCcCC----CcceEECCCCC-EEEEEC------
Confidence 567789999998 55532 1 458999998887655443221111 45788899997 444300
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC--ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~--~~~~~~~~SpDGk~l 346 (954)
....|++++. +......... .....++++|||+ |
T Consensus 127 ------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l 163 (270)
T 1rwi_B 127 ------------------------------------------GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-V 163 (270)
T ss_dssp ------------------------------------------GGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-E
T ss_pred ------------------------------------------CCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-E
Confidence 2234677765 3333222222 3567789999998 4
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
+++... ...|++++.++........... ..+..+++++||. +++. +
T Consensus 164 ~v~~~~------------~~~i~~~~~~~~~~~~~~~~~~------------~~p~~i~~d~~g~-l~v~-~-------- 209 (270)
T 1rwi_B 164 YVTDTD------------NNRVVKLEAESNNQVVLPFTDI------------TAPWGIAVDEAGT-VYVT-E-------- 209 (270)
T ss_dssp EEEEGG------------GTEEEEECTTTCCEEECCCSSC------------CSEEEEEECTTCC-EEEE-E--------
T ss_pred EEEECC------------CCEEEEEecCCCceEeecccCC------------CCceEEEECCCCC-EEEE-E--------
Confidence 444322 1278889988765443221110 2345788999983 3332 2
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEeec-ccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
...+.|++++. ++.....+... ......+++++||+ |+++...+ .+|.+++...
T Consensus 210 ---~~~~~v~~~~~---~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~---~~v~~~~~~~ 264 (270)
T 1rwi_B 210 ---HNTNQVVKLLA---GSTTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGN---DRVVKLTSLE 264 (270)
T ss_dssp ---TTTSCEEEECT---TCSCCEECCCCSCSCEEEEEECTTCC-EEEEEGGG---TEEEEECCCG
T ss_pred ---CCCCcEEEEcC---CCCcceeeccCCCCCceeEEECCCCC-EEEEECCC---CEEEEEcCCC
Confidence 12346888884 44444333222 23456789999996 55554333 4677777665
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.47 E-value=6.8e-07 Score=97.02 Aligned_cols=170 Identities=11% Similarity=0.013 Sum_probs=93.8
Q ss_pred HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh---CCCcccE
Q 002194 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH---APHLFCC 786 (954)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~---~p~~~~a 786 (954)
..+|.|+. .+..|+|.+...........+++.+.+..+. ...++.++||||||.++..++.+ .|++++.
T Consensus 125 ~~~~~v~~---~d~~g~~~~~~~~~~~~~~a~~~~~~i~~~~-----~~~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~ 196 (329)
T 3tej_A 125 DPQWSIIG---IQSPRPNGPMQTAANLDEVCEAHLATLLEQQ-----PHGPYYLLGYSLGGTLAQGIAARLRARGEQVAF 196 (329)
T ss_dssp CTTCEEEE---ECCCTTTSHHHHCSSHHHHHHHHHHHHHHHC-----SSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCeEEE---eeCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-----CCCCEEEEEEccCHHHHHHHHHHHHhcCCcccE
Confidence 46899999 5556776654333334555555555444331 22489999999999999999998 8999999
Q ss_pred EEEeccCCCCC----CC-CCCCcccc--------------------chhhhc-HHHHHhc-C--cccccCCCCCCEEEEE
Q 002194 787 GIARSGAYNRT----LT-PFGFQNED--------------------RTLWEA-TSTYVEM-S--PFMSANKLKKPILLVH 837 (954)
Q Consensus 787 ~v~~~~~~~~~----~~-~~~~~~~~--------------------~~~~~~-~~~~~~~-s--p~~~~~~~~~P~Lii~ 837 (954)
+|++.+..... .. ...+.... ....+. ...+... . .......+.+|++++.
T Consensus 197 lvl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~l~~ 276 (329)
T 3tej_A 197 LGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGSTSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFV 276 (329)
T ss_dssp EEEESCCCTHHHHTC-----CCCCTHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEE
T ss_pred EEEeCCCCCCccccccccccccChhhHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCCCcCCCeEEEE
Confidence 99887643210 00 00000000 000000 0001000 0 0011235678999999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcC-CCcccHHHHHHHHHHHH
Q 002194 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY-AARESIMHVLWETDRWL 894 (954)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~-~~~~~~~~~~~~i~~fl 894 (954)
|+.|..++ ......+.. .-.+++++.+++ +|.. ...+....+...+.+||
T Consensus 277 ~~~d~~~~--~~~~~~w~~----~~~~~~~~~v~g-~H~~~~~~~~~~~ia~~l~~~L 327 (329)
T 3tej_A 277 AERTLQEG--MSPERAWSP----WIAELDIYRQDC-AHVDIISPGTFEKIGPIIRATL 327 (329)
T ss_dssp EGGGCCTT--CCHHHHHTT----TEEEEEEEEESS-CGGGGGSTTTHHHHHHHHHHHH
T ss_pred eccCCCCC--CCchhhHHH----hcCCcEEEEecC-ChHHhCCChHHHHHHHHHHHHh
Confidence 99998775 443333322 223578888985 7763 23333344444455544
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-05 Score=84.30 Aligned_cols=193 Identities=13% Similarity=0.116 Sum_probs=106.0
Q ss_pred cccceeec-CCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 190 KLNFVTWS-QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 190 ~~~~~~wS-PDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
.....+++ ++| .|+++.. .+...|++++.++...+.+...... ....++++|||++++.. .
T Consensus 78 ~p~~i~~~~~~g-~l~v~~~-------~~~~~i~~~d~~g~~~~~~~~~~~~----~~~~i~~~~~g~l~v~~-~----- 139 (286)
T 1q7f_A 78 YPNRVAVVRNSG-DIIVTER-------SPTHQIQIYNQYGQFVRKFGATILQ----HPRGVTVDNKGRIIVVE-C----- 139 (286)
T ss_dssp SEEEEEEETTTT-EEEEEEC-------GGGCEEEEECTTSCEEEEECTTTCS----CEEEEEECTTSCEEEEE-T-----
T ss_pred CceEEEEEcCCC-eEEEEcC-------CCCCEEEEECCCCcEEEEecCccCC----CceEEEEeCCCCEEEEE-C-----
Confidence 34566774 565 4555431 1246789999665444433221111 14578899999744422 0
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCc-eeEcCC--C-ccccccccCCCCc
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEIGP--P-AVYTSLDPSPDEK 344 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~-~~~l~~--~-~~~~~~~~SpDGk 344 (954)
....|++++.+|+ ...+.. . .....++++|||+
T Consensus 140 -------------------------------------------~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 140 -------------------------------------------KVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE 176 (286)
T ss_dssp -------------------------------------------TTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred -------------------------------------------CCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC
Confidence 1234777776553 333321 2 4467789999998
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
|+++... ...|++|+.++.....+.... ....+..+++++||+ +++. +
T Consensus 177 -l~v~~~~------------~~~i~~~~~~g~~~~~~~~~g-----------~~~~p~~i~~d~~G~-l~v~-~------ 224 (286)
T 1q7f_A 177 -IFISDNR------------AHCVKVFNYEGQYLRQIGGEG-----------ITNYPIGVGINSNGE-ILIA-D------ 224 (286)
T ss_dssp -EEEEEGG------------GTEEEEEETTCCEEEEESCTT-----------TSCSEEEEEECTTCC-EEEE-E------
T ss_pred -EEEEECC------------CCEEEEEcCCCCEEEEEccCC-----------ccCCCcEEEECCCCC-EEEE-e------
Confidence 3333311 127999998877665554311 012345789999995 3332 1
Q ss_pred ccccccCCC-eEEEEecCCCCCCCceEEeeccc--ccCceeeccCCceEEEEEeccccceEEEEE
Q 002194 425 AKVEVTPRD-IIYTQQAEPVQGEGPEILHKLDL--RYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 425 ~~~~~~~~~-~l~~~~~~~~~g~~~~~l~~~~~--~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (954)
...+ .|.+++. ++.....+..... .+..++++|||+ |+++. .+ ....+|.+
T Consensus 225 -----~~~~~~i~~~~~---~g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs~-~~-~~v~v~~~ 278 (286)
T 1q7f_A 225 -----NHNNFNLTIFTQ---DGQLISALESKVKHAQCFDVALMDDGS-VVLAS-KD-YRLYIYRY 278 (286)
T ss_dssp -----CSSSCEEEEECT---TSCEEEEEEESSCCSCEEEEEEETTTE-EEEEE-TT-TEEEEEEC
T ss_pred -----CCCCEEEEEECC---CCCEEEEEcccCCCCcceeEEECCCCc-EEEEC-CC-CeEEEEEc
Confidence 1233 7888884 5544444443322 245789999997 44443 33 22445544
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-05 Score=86.80 Aligned_cols=247 Identities=13% Similarity=0.088 Sum_probs=127.2
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecC-CeEEEEEecCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN-STLLVCTIPLLRGD 268 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD-G~~l~~~~~~~~~~ 268 (954)
....++|++||+ |+++.... ...+.....|+++++++++.+.+...........+..+.+++| |++++..
T Consensus 19 ~~~~~~~~~~g~-l~~~~~~~-~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~------- 89 (314)
T 1pjx_A 19 GAEGPVFDKNGD-FYIVAPEV-EVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD------- 89 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTC-EETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-------
T ss_pred CccCceECCCCC-EEEEEecc-ccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-------
Confidence 456789999995 55541000 0001124579999988888766543100000111457889999 7644433
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEc-CCC------ccccccccCC
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEI-GPP------AVYTSLDPSP 341 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l-~~~------~~~~~~~~Sp 341 (954)
....|++++.+|+.+.+ ... .....++++|
T Consensus 90 -------------------------------------------~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~ 126 (314)
T 1pjx_A 90 -------------------------------------------MRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY 126 (314)
T ss_dssp -------------------------------------------TTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT
T ss_pred -------------------------------------------CCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECC
Confidence 11247778876665555 321 2356788999
Q ss_pred CCcEEEEEeecCC--cccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeec----cCCCCceE
Q 002194 342 DEKYILISSIHRP--YSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR----SDKPSTLY 415 (954)
Q Consensus 342 DGk~l~~~s~~~~--~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~ws----pDg~~i~~ 415 (954)
||+..+....... .............++.++.+ ++.+.+.... .....++|+ |||+.+++
T Consensus 127 ~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~-------------~~~~~i~~~~~~d~dg~~l~v 192 (314)
T 1pjx_A 127 EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF-------------QFPNGIAVRHMNDGRPYQLIV 192 (314)
T ss_dssp TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE-------------SSEEEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCC-------------CCcceEEEecccCCCCCEEEE
Confidence 9975444332100 00000000112367777776 3333332110 123468899 99985544
Q ss_pred EEEeccCCCccccccCCCeEEEEecCCCCCCCce---EEeecc----cccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE---ILHKLD----LRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~---~l~~~~----~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
. + ...+.|++++. ...++.. .+.... .....+++++||+ |+++...+ ..|++++.
T Consensus 193 ~-~-----------~~~~~i~~~~~--~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~---~~i~~~d~ 254 (314)
T 1pjx_A 193 A-E-----------TPTKKLWSYDI--KGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGS---SHIEVFGP 254 (314)
T ss_dssp E-E-----------TTTTEEEEEEE--EETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETT---TEEEEECT
T ss_pred E-E-----------CCCCeEEEEEC--CCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCC---CEEEEEcC
Confidence 3 1 12457888875 1122211 121111 3356688999996 44333222 36889998
Q ss_pred CCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 489 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+++. ....+ ..+...+.+ +.++|||++|+...
T Consensus 255 ~~g~-~~~~~-~~~~~~~~~------i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 255 DGGQ-PKMRI-RCPFEKPSN------LHFKPQTKTIFVTE 286 (314)
T ss_dssp TCBS-CSEEE-ECSSSCEEE------EEECTTSSEEEEEE
T ss_pred CCCc-EeEEE-eCCCCCcee------EEECCCCCEEEEEe
Confidence 8542 12222 222122222 67889998776665
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.5e-07 Score=99.87 Aligned_cols=85 Identities=18% Similarity=0.095 Sum_probs=66.6
Q ss_pred HHHH-CCcEEEEcCCCCCCCCCCcccch--h----------hHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEeeChHHHH
Q 002194 707 LWLA-RGFAILGGPTTPIIGEGDEEAND--R----------FVEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAFM 772 (954)
Q Consensus 707 ~la~-~G~~V~~~~~~~~~G~G~~~~~~--~----------~~~~~~~D~~~av~~l~~~~-~~d~~ri~l~G~S~GG~~ 772 (954)
.+|. .|+.|+. .+.+|||++.... . ...+.++|+...++++.... .....++.++||||||.+
T Consensus 63 ~lA~~~~~~Vi~---~DhRg~G~S~p~~~~~~~~~~~l~~lt~~q~~~Dl~~~~~~l~~~~~~~~~~p~il~GhS~GG~l 139 (446)
T 3n2z_B 63 DVAEELKAMLVF---AEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAENQPVIAIGGSYGGML 139 (446)
T ss_dssp HHHHHHTEEEEE---ECCTTSTTCCTTGGGGGSCTTTSTTCSHHHHHHHHHHHHHHHHHHSTTGGGCCEEEEEETHHHHH
T ss_pred HHHHHhCCcEEE---EecCCCCCCCCCCccccccchhhccCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEeCHHHHH
Confidence 4454 5889999 6777888884321 1 15678999999999998752 223358999999999999
Q ss_pred HHHHHHhCCCcccEEEEeccCC
Q 002194 773 TANLLAHAPHLFCCGIARSGAY 794 (954)
Q Consensus 773 a~~~a~~~p~~~~a~v~~~~~~ 794 (954)
|++++.++|+++.++|+.++..
T Consensus 140 A~~~~~~yP~~v~g~i~ssapv 161 (446)
T 3n2z_B 140 AAWFRMKYPHMVVGALAASAPI 161 (446)
T ss_dssp HHHHHHHCTTTCSEEEEETCCT
T ss_pred HHHHHHhhhccccEEEEeccch
Confidence 9999999999999999877554
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.46 E-value=8.4e-07 Score=95.19 Aligned_cols=106 Identities=16% Similarity=0.097 Sum_probs=73.3
Q ss_pred ccEEEEECCCCCcCcccCccccCCC-CCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSP-NEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (954)
.|.||++||....... +.. ..| ......|+++||.|+. .+..|+|.+...........+|+.++++
T Consensus 8 ~~~vVlvHG~~~~~~~------~~~~~~w----~~l~~~L~~~G~~V~~---~d~~g~g~s~~~~~~~~~l~~~i~~~l~ 74 (320)
T 1ys1_X 8 RYPIILVHGLTGTDKY------AGVLEYW----YGIQEDLQQRGATVYV---ANLSGFQSDDGPNGRGEQLLAYVKTVLA 74 (320)
T ss_dssp SSCEEEECCTTCCSEE------TTTEESS----TTHHHHHHHTTCCEEE---CCCCSSCCSSSTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccc------cchHHHH----HHHHHHHHhCCCEEEE---EcCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4678999996322100 000 112 2356788899999999 5666777764433334455555555544
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCC
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (954)
.+ +.+++.++||||||.++..++.++|++++++|.+++..
T Consensus 75 ~~------~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p~ 114 (320)
T 1ys1_X 75 AT------GATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPH 114 (320)
T ss_dssp HH------CCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred Hh------CCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCCC
Confidence 43 34689999999999999999999999999999999753
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.3e-05 Score=81.94 Aligned_cols=195 Identities=10% Similarity=-0.008 Sum_probs=106.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
....++++|||+ |+++.+ .....|++++..++....+...... ....+++++||+ |+++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~----~p~~i~~~~~g~-l~v~~------- 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSE-------GMYGRVVKLATGSTGTTVLPFNGLY----QPQGLAVDGAGT-VYVTD------- 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEEC-------SSSCEEEEECC-----EECCCCSCC----SCCCEEECTTCC-EEEEE-------
T ss_pred CccceEECCCCC-EEEEcc-------CCCCcEEEecCCCcccceEeeCCcC----CcceeEECCCCC-EEEEc-------
Confidence 356678999997 544131 2356899998776654443222111 145788999998 55440
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCC-ceeEcCCC--ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEIGPP--AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G-~~~~l~~~--~~~~~~~~SpDGk~l 346 (954)
....|++++.+| ....+... .....++++|||+ |
T Consensus 85 ------------------------------------------~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~-l 121 (270)
T 1rwi_B 85 ------------------------------------------FNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-V 121 (270)
T ss_dssp ------------------------------------------TTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCC-E
T ss_pred ------------------------------------------CCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCC-E
Confidence 112477788733 44433322 4566788999997 4
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
+++... ...|++++..+......... ....+..+++++||+ +|+.+.
T Consensus 122 ~v~~~~------------~~~i~~~~~~~~~~~~~~~~------------~~~~p~~i~~~~~g~--l~v~~~------- 168 (270)
T 1rwi_B 122 YVADRG------------NNRVVKLAAGSKTQTVLPFT------------GLNDPDGVAVDNSGN--VYVTDT------- 168 (270)
T ss_dssp EEEEGG------------GTEEEEECTTCCSCEECCCC------------SCCSCCCEEECTTCC--EEEEEG-------
T ss_pred EEEECC------------CCEEEEEECCCceeEeeccc------------cCCCceeEEEeCCCC--EEEEEC-------
Confidence 443322 12677776543322211110 012345789999997 344221
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEeecc-cccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
..+.|++++. ++.......... .....+++++|| .|+++...+ ..|++++.++.
T Consensus 169 ----~~~~i~~~~~---~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~---~~v~~~~~~~~ 223 (270)
T 1rwi_B 169 ----DNNRVVKLEA---ESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNT---NQVVKLLAGST 223 (270)
T ss_dssp ----GGTEEEEECT---TTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTT---SCEEEECTTCS
T ss_pred ----CCCEEEEEec---CCCceEeecccCCCCceEEEECCCC-CEEEEECCC---CcEEEEcCCCC
Confidence 2357888885 444433322222 345678999999 555554333 35888888764
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=98.44 E-value=4.6e-07 Score=92.75 Aligned_cols=156 Identities=11% Similarity=0.069 Sum_probs=84.0
Q ss_pred cEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC---CcccEEEE
Q 002194 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIA 789 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~ 789 (954)
|.|+..+ ..|+|.. ..|+.+.++.+. ...++.++|||+||.++..++.+.+ +.++++|.
T Consensus 43 ~~v~~~d---~~g~~~~----------~~~~~~~i~~~~-----~~~~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl 104 (230)
T 1jmk_C 43 YKLCAFD---FIEEEDR----------LDRYADLIQKLQ-----PEGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIM 104 (230)
T ss_dssp EEEEEEC---CCCSTTH----------HHHHHHHHHHHC-----CSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEec---CCCHHHH----------HHHHHHHHHHhC-----CCCCeEEEEECHhHHHHHHHHHHHHHcCCCccEEEE
Confidence 9999844 4455432 234444444431 1247999999999999999987653 56888888
Q ss_pred eccCCCCCCCCCC---Ccc----------ccchhh-----hcH----HHHHhcCc-ccccCCCCCCEEEEEeCCCCCCCC
Q 002194 790 RSGAYNRTLTPFG---FQN----------EDRTLW-----EAT----STYVEMSP-FMSANKLKKPILLVHGEEDNNSGT 846 (954)
Q Consensus 790 ~~~~~~~~~~~~~---~~~----------~~~~~~-----~~~----~~~~~~sp-~~~~~~~~~P~Lii~G~~D~~v~~ 846 (954)
+++........+. ... ...... ... ..+..+.. .....++++|+++++|++|..++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~- 183 (230)
T 1jmk_C 105 VDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSEAVKHGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIP- 183 (230)
T ss_dssp ESCCEECCCC--------CCHHHHHHHTTTCSGGGSHHHHHHHHHHHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCC-
T ss_pred ECCCCCCcccccccccHHHHHHHHHhcChhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccEEEEEeCCCCCCc-
Confidence 7754221100000 000 000000 000 01111110 12346788999999999999875
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEeCCCCC--cCCCcccHHHHHHHHHHHH
Q 002194 847 LTMQSDRFFNALKGHGALCRLVILPFESH--GYAARESIMHVLWETDRWL 894 (954)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H--~~~~~~~~~~~~~~i~~fl 894 (954)
.. ...+.+ ....+++++.+++ +| .+ ..+....+...+.+||
T Consensus 184 -~~-~~~w~~---~~~~~~~~~~i~g-~H~~~~-~~~~~~~~~~~i~~~l 226 (230)
T 1jmk_C 184 -EW-LASWEE---ATTGAYRMKRGFG-THAEML-QGETLDRNAGILLEFL 226 (230)
T ss_dssp -TT-EECSGG---GBSSCEEEEECSS-CGGGTT-SHHHHHHHHHHHHHHH
T ss_pred -cc-cchHHH---hcCCCeEEEEecC-ChHHHc-CcHhHHHHHHHHHHHH
Confidence 22 212211 1233588999998 89 55 3344444555555554
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.4e-07 Score=101.80 Aligned_cols=166 Identities=13% Similarity=0.136 Sum_probs=104.2
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCc---EEEEcCCCCCCCCCCcc---------------c
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF---AILGGPTTPIIGEGDEE---------------A 731 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~---~V~~~~~~~~~G~G~~~---------------~ 731 (954)
.|.||++||..... ..| ..++..|+++|| .|+. .+..|+|.+. .
T Consensus 22 ~ppVVLlHG~g~s~-----------~~w----~~la~~La~~Gy~~~~Via---~DlpG~G~S~~~~~Dv~~~G~~~~~G 83 (484)
T 2zyr_A 22 FRPVVFVHGLAGSA-----------GQF----ESQGMRFAANGYPAEYVKT---FEYDTISWALVVETDMLFSGLGSEFG 83 (484)
T ss_dssp CCCEEEECCTTCCG-----------GGG----HHHHHHHHHTTCCGGGEEE---ECCCHHHHHHHTTTSTTTTTGGGHHH
T ss_pred CCEEEEECCCCCCH-----------HHH----HHHHHHHHHcCCCcceEEE---EECCCCCccccccccccccccccccc
Confidence 57789999963211 111 245677888999 6888 4555666430 0
Q ss_pred -------------------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC---CcccEEEE
Q 002194 732 -------------------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIA 789 (954)
Q Consensus 732 -------------------~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~ 789 (954)
........++++.+.++.+.++. +.+++.++||||||.+++.++.++| ++++++|+
T Consensus 84 ~n~~p~id~~~l~~v~~~~~~~~~~~~~~dla~~L~~ll~~l--g~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVl 161 (484)
T 2zyr_A 84 LNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAES--GADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLIL 161 (484)
T ss_dssp HHHGGGSCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEE
T ss_pred cccccccccccccccccccccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEE
Confidence 00123345677777787777763 2368999999999999999999987 48999999
Q ss_pred eccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCC--CCCchHHHHHHHHHHHhCCCcEEE
Q 002194 790 RSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNN--SGTLTMQSDRFFNALKGHGALCRL 867 (954)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~--v~~~~~~~~~~~~~l~~~g~~~~~ 867 (954)
+++.++.. + ....++|-+.|..|.. |.. +.. .++. ..+.
T Consensus 162 Iapp~~~d----------------------~-------p~g~~~L~ilG~~d~~p~V~~-pss------~L~~---ga~~ 202 (484)
T 2zyr_A 162 LDGVWGVD----------------------A-------PEGIPTLAVFGNPKALPALGL-PEE------KVVY---NATN 202 (484)
T ss_dssp ESCCCSEE----------------------C-------CTTSCEEEEEECGGGSCCSSC-CSS------CCEE---TSEE
T ss_pred ECCccccc----------------------c-------CcCCHHHHHhCCCCcCCcccC-hhH------hcCC---CceE
Confidence 99865310 0 1235677777766531 110 111 1110 1256
Q ss_pred EEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 868 VILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 868 ~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
+++++++|... ..+ ..+.+.+.+||..
T Consensus 203 v~i~~a~H~~l-l~d-p~v~~~Vl~fL~~ 229 (484)
T 2zyr_A 203 VYFNNMTHVQL-CTS-PETFAVMFEFING 229 (484)
T ss_dssp EEETTCCHHHH-HHC-HHHHHHHHHHHHS
T ss_pred EEECCCCcccc-ccC-HHHHHHHHHHhcc
Confidence 67799999853 222 3456678888875
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.9e-05 Score=86.00 Aligned_cols=180 Identities=12% Similarity=0.096 Sum_probs=117.2
Q ss_pred ceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhh
Q 002194 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (954)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (954)
...|+.+++++++...+...... ...++|.+++..|+++-.
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~~~~-----~~gl~~d~~~~~ly~~D~---------------------------------- 135 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNNLEN-----AIALDFHHRRELVFWSDV---------------------------------- 135 (386)
T ss_dssp BSCEEEECTTSCCCEEEECSCSC-----EEEEEEETTTTEEEEEET----------------------------------
T ss_pred CccceeeccCCCcEEEEecCCCc-----cEEEEEecCCCeEEEEeC----------------------------------
Confidence 45799999988776665543322 457899988778887610
Q ss_pred hccCccccccccccccceEEEEEeCC-ceeEc-CCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc
Q 002194 298 LLKDEYDEDLFDYYATTQLVLVSLDG-TVKEI-GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (954)
Q Consensus 298 ~l~~~~d~~~~~~~~~~~l~~~~~~G-~~~~l-~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~ 374 (954)
....|++++++| ..+.+ ... ....++++.+.+..|+++.... ..|++++++
T Consensus 136 --------------~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~------------~~I~~~~~d 189 (386)
T 3v65_B 136 --------------TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT------------SRIEVANLD 189 (386)
T ss_dssp --------------TTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTT------------TEEEECBTT
T ss_pred --------------CCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCC------------CeEEEEeCC
Confidence 234688999844 44443 333 4556788888888888776332 278888888
Q ss_pred CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec
Q 002194 375 GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL 454 (954)
Q Consensus 375 g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~ 454 (954)
|+..+.+..... ..++.+++.|++..| ||++.. ....|+++++ +|...+.+...
T Consensus 190 g~~~~~l~~~~l------------~~P~giavdp~~g~l-y~td~~----------~~~~I~r~~~---dG~~~~~~~~~ 243 (386)
T 3v65_B 190 GAHRKVLLWQSL------------EKPRAIALHPMEGTI-YWTDWG----------NTPRIEASSM---DGSGRRIIADT 243 (386)
T ss_dssp SCSCEEEECSSC------------SCEEEEEEETTTTEE-EEEECS----------SSCEEEEEET---TSCSCEEEECS
T ss_pred CCceEEeecCCC------------CCCcEEEEEcCCCeE-EEeccC----------CCCEEEEEeC---CCCCcEEEEEC
Confidence 765544433111 234578899877654 553321 1357999986 66665555433
Q ss_pred -ccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 455 -DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 455 -~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
-....+++|+|+++.|+++.... .+|++++.++.
T Consensus 244 ~~~~PnGlavd~~~~~lY~aD~~~---~~I~~~d~dG~ 278 (386)
T 3v65_B 244 HLFWPNGLTIDYAGRRMYWVDAKH---HVIERANLDGS 278 (386)
T ss_dssp SCSCEEEEEEEGGGTEEEEEETTT---TEEEEECTTSC
T ss_pred CCCCeeeEEEeCCCCEEEEEECCC---CEEEEEeCCCC
Confidence 23356799999999998885433 57999999874
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=5.2e-07 Score=101.57 Aligned_cols=108 Identities=11% Similarity=-0.123 Sum_probs=77.9
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~a 746 (954)
.|+||++||++... ...+.......|++ .||.|++ .|..|+|.+... ........+|+.+.
T Consensus 70 ~p~vvliHG~~~~~-------------~~~w~~~l~~~l~~~~~~~Vi~---~D~~G~G~S~~~~~~~~~~~~~~dl~~l 133 (452)
T 1bu8_A 70 RKTRFIVHGFIDKG-------------EDGWLLDMCKKMFQVEKVNCIC---VDWRRGSRTEYTQASYNTRVVGAEIAFL 133 (452)
T ss_dssp SEEEEEECCSCCTT-------------CTTHHHHHHHHHHTTCCEEEEE---EECHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCC-------------CchHHHHHHHHHHhhCCCEEEE---EechhcccCchhHhHhhHHHHHHHHHHH
Confidence 58999999964211 01111113445555 4999999 566677776432 11223556788889
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
+++|.++..++.+++.|+|||+||.+|+.++.++|++++++|.++|.
T Consensus 134 i~~L~~~~g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa 180 (452)
T 1bu8_A 134 VQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPA 180 (452)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred HHHHHHhcCCCccceEEEEEChhHHHHHHHHHhcccccceEEEecCC
Confidence 99987654466789999999999999999999999999999999875
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-05 Score=89.69 Aligned_cols=209 Identities=12% Similarity=0.058 Sum_probs=113.6
Q ss_pred cccceeecC-----CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeE-e-cCCeEEEEEe
Q 002194 190 KLNFVTWSQ-----DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW-V-NNSTLLVCTI 262 (954)
Q Consensus 190 ~~~~~~wSP-----DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w-s-pDG~~l~~~~ 262 (954)
...+|..|. ||++|+. .+ ..+..|.++|+++.+..+++..+... ....+++ + ||++++++..
T Consensus 86 d~hh~~~s~t~g~~DG~~lfV-nd-------~~~~rVavIdl~t~~~~~ii~ip~g~---~phg~~~~~~p~~~~v~~~~ 154 (595)
T 1fwx_A 86 DLHHVHMSFTEGKYDGRFLFM-ND-------KANTRVARVRCDVMKCDAILEIPNAK---GIHGLRPQKWPRSNYVFCNG 154 (595)
T ss_dssp CBCCEEEEEETTEEEEEEEEE-EE-------TTTTEEEEEETTTTEEEEEEECSSCC---SEEEEEECCSSBCSEEEEEE
T ss_pred CCCccccCCCCCCcCCCEEEE-Ec-------CCCCEEEEEECCCceEeeEEeCCCCC---CCcceeeeecCCCcEEEEec
Confidence 456688887 9987665 42 24778999999999877765544321 1446666 5 9999998772
Q ss_pred cCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCCccccccccC
Q 002194 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPS 340 (954)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~~~~~~~~~S 340 (954)
...... ++++.. ..+ .++ ....+-.+|. +.+ ..++.-++.....+.|
T Consensus 155 ~~~~p~--------------~~dg~~------l~~--~~~---------~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~s 203 (595)
T 1fwx_A 155 EDETPL--------------VNDGTN------MED--VAN---------YVNVFTAVDADKWEVAWQVLVSGNLDNCDAD 203 (595)
T ss_dssp CSCEES--------------SCSSSS------TTC--GGG---------EEEEEEEEETTTTEEEEEEEESSCCCCEEEC
T ss_pred cccccc--------------CCCCcc------ccc--ccc---------cCceEEEEECCCCeEEEEEEeCCCccceEEC
Confidence 110000 001000 000 001 2344667787 553 3344333456678899
Q ss_pred CCCcEEEEEeecCCcccccc--cCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002194 341 PDEKYILISSIHRPYSFIVP--CGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (954)
Q Consensus 341 pDGk~l~~~s~~~~~~~~~~--~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~ 418 (954)
|||++++.++...+...... ...-...+.+.+.. +...+.+||+....
T Consensus 204 pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~---------------------------~~~~~v~~Gk~~~i--- 253 (595)
T 1fwx_A 204 YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA---------------------------EIEKAIAAGDYQEL--- 253 (595)
T ss_dssp SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH---------------------------HHHHHHHHTCSEEE---
T ss_pred CCCCEEEEEecCcccCcchhhccccccceEEEeecc---------------------------ceeEeccCCCeeEE---
Confidence 99999999885532110000 00000012122111 12236677775321
Q ss_pred eccCCCccccccCCCeEEEEecCCCC--CCC-ceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 419 TQDGGDAKVEVTPRDIIYTQQAEPVQ--GEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~--g~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+.+.++|. .+ +.. .+.+.. .....++.+||||++++.+.... ..+.++|.++
T Consensus 254 --------------~~V~VID~--~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s---~~VsVid~~~ 308 (595)
T 1fwx_A 254 --------------NGVKVVDG--RKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLS---PTVTVLDVTR 308 (595)
T ss_dssp --------------TTEEEEEC--SGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTS---SBEEEEEGGG
T ss_pred --------------CcEEEEeC--cccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCC---CeEEEEECcc
Confidence 23778885 22 223 233333 33567899999999988764433 3577777764
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=4.3e-05 Score=82.76 Aligned_cols=234 Identities=6% Similarity=-0.019 Sum_probs=121.8
Q ss_pred ceEEEEEe-CCceeEcCC-C--ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc--eEEEeccCCCc
Q 002194 314 TQLVLVSL-DGTVKEIGP-P--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FVRELCDLPLA 387 (954)
Q Consensus 314 ~~l~~~~~-~G~~~~l~~-~--~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~--~~~~l~~~~~~ 387 (954)
..|+++|. +|+...... . .....++++|||+ |+++... ...|++|+.+++ ....+......
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~------------~~~v~~~~~~g~~~~~~~~~~~~~~ 135 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTDVA------------LHQVFKLDPHSKEGPLLILGRSMQP 135 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEETT------------TTEEEEECTTCSSCCSEEESBTTBC
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEECC------------CCEEEEEeCCCCeEEEEEecccCCC
Confidence 46889998 787554332 2 4556789999999 4444322 237889998876 34444321100
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecc----------cc
Q 002194 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD----------LR 457 (954)
Q Consensus 388 ~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~----------~~ 457 (954)
... ......+..++++|++..+++. +. .....|++++. +|.....+.... ..
T Consensus 136 g~~----~~~~~~P~~ia~~~~~g~lyv~-d~----------~~~~~I~~~~~---~g~~~~~~~~~g~~~~~~~~~~~~ 197 (329)
T 3fvz_A 136 GSD----QNHFCQPTDVAVEPSTGAVFVS-DG----------YCNSRIVQFSP---SGKFVTQWGEESSGSSPRPGQFSV 197 (329)
T ss_dssp CCS----TTCCSSEEEEEECTTTCCEEEE-EC----------SSCCEEEEECT---TSCEEEEECEECCSSSCCTTEESC
T ss_pred CCC----ccccCCCcEEEEeCCCCeEEEE-eC----------CCCCeEEEEcC---CCCEEEEeccCCCCCCCCCcccCC
Confidence 000 0111245679999944444443 21 02457888874 544444442111 12
Q ss_pred cCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecC--CCCCccCCCCCCCeeeccCCcEEEEEEeeccCCC
Q 002194 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR--SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEG 535 (954)
Q Consensus 458 ~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~ 535 (954)
..+++++||+..|+++...+ .+|.+++.+++ +....... .....+. +.++| |. ++...+
T Consensus 198 p~gia~d~~~g~l~v~d~~~---~~I~~~~~~~G--~~~~~~~~~~~~~~~~~------~~~~p-g~--~~~~~g----- 258 (329)
T 3fvz_A 198 PHSLALVPHLDQLCVADREN---GRIQCFKTDTK--EFVREIKHASFGRNVFA------ISYIP-GF--LFAVNG----- 258 (329)
T ss_dssp EEEEEEETTTTEEEEEETTT---TEEEEEETTTC--CEEEEECCTTTTTCEEE------EEEET-TE--EEEEEC-----
T ss_pred CcEEEEECCCCEEEEEECCC---CEEEEEECCCC--cEEEEEeccccCCCcce------eeecC-CE--EEEeCC-----
Confidence 45689999966676664433 46888888754 22222211 1111122 56777 42 222211
Q ss_pred cEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEE
Q 002194 536 TYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQS 615 (954)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~ 615 (954)
.+|+. ......+++||+.+|+.......... -+..+. ..++++|| .++++... ...|++++
T Consensus 259 -~~~v~------~~~~~~v~~~~~~~g~~~~~~~~~~~-~~~~p~-------~ia~~~dG-~lyvad~~---~~~I~~~~ 319 (329)
T 3fvz_A 259 -KPYFG------DQEPVQGFVMNFSSGEIIDVFKPVRK-HFDMPH-------DIVASEDG-TVYIGDAH---TNTVWKFT 319 (329)
T ss_dssp -CCCTT------CSCCCCEEEEETTTCCEEEEECCSSS-CCSSEE-------EEEECTTS-EEEEEESS---SCCEEEEE
T ss_pred -CEEec------cCCCcEEEEEEcCCCeEEEEEcCCCC-ccCCee-------EEEECCCC-CEEEEECC---CCEEEEEe
Confidence 11111 11234699999998887766542211 011112 24688888 55544433 23577766
Q ss_pred C
Q 002194 616 W 616 (954)
Q Consensus 616 ~ 616 (954)
+
T Consensus 320 ~ 320 (329)
T 3fvz_A 320 L 320 (329)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=3e-05 Score=81.89 Aligned_cols=201 Identities=8% Similarity=0.043 Sum_probs=111.1
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCC-ccccccccceeEe-cCCeEEEEEecCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD-IYLNAIFDNFVWV-NNSTLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~-~~~~~~~~~~~ws-pDG~~l~~~~~~~~~ 267 (954)
....++++|||+ |+++.. ....|++++.++...+.+..... .........++++ ++|++++...
T Consensus 31 ~p~~v~~~~~g~-l~v~~~--------~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~----- 96 (286)
T 1q7f_A 31 EPSGVAVNAQND-IIVADT--------NNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER----- 96 (286)
T ss_dssp CEEEEEECTTCC-EEEEEG--------GGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC-----
T ss_pred CCceEEECCCCC-EEEEEC--------CCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcC-----
Confidence 456678999997 444321 25679999988654444422110 0000113467774 6676444320
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCc-eeEcCCC--ccccccccCCCCc
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEIGPP--AVYTSLDPSPDEK 344 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~-~~~l~~~--~~~~~~~~SpDGk 344 (954)
. ....|++++.+|+ .+.+... .....++++|||+
T Consensus 97 ----------------------------------~---------~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~ 133 (286)
T 1q7f_A 97 ----------------------------------S---------PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR 133 (286)
T ss_dssp ----------------------------------G---------GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSC
T ss_pred ----------------------------------C---------CCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCC
Confidence 0 1234777777554 3333322 4566788999997
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
|+++... ...|++|+.++...+.+.... ....+..++++|||+ +|..+.
T Consensus 134 -l~v~~~~------------~~~i~~~~~~g~~~~~~~~~~-----------~~~~p~~i~~~~~g~--l~v~~~----- 182 (286)
T 1q7f_A 134 -IIVVECK------------VMRVIIFDQNGNVLHKFGCSK-----------HLEFPNGVVVNDKQE--IFISDN----- 182 (286)
T ss_dssp -EEEEETT------------TTEEEEECTTSCEEEEEECTT-----------TCSSEEEEEECSSSE--EEEEEG-----
T ss_pred -EEEEECC------------CCEEEEEcCCCCEEEEeCCCC-----------ccCCcEEEEECCCCC--EEEEEC-----
Confidence 4443311 237889998876655543211 012346789999997 333221
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEEeec--ccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
..+.|++++. ++.....+... ......+++++||+ |+++...++ ..|.+++.++
T Consensus 183 ------~~~~i~~~~~---~g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~--~~i~~~~~~g 238 (286)
T 1q7f_A 183 ------RAHCVKVFNY---EGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNN--FNLTIFTQDG 238 (286)
T ss_dssp ------GGTEEEEEET---TCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSS--CEEEEECTTS
T ss_pred ------CCCEEEEEcC---CCCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCC--EEEEEECCCC
Confidence 2457888884 54433444222 13456789999996 444433221 2688888765
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-06 Score=91.47 Aligned_cols=119 Identities=13% Similarity=-0.048 Sum_probs=77.4
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcc
Q 002194 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (954)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~ 730 (954)
.+...++.|.. .+.. ..+.||++||..... ...|...+...|.++||.|+.. +..|+|.+.
T Consensus 49 ~L~~~i~~p~~-~~~~--~~~pVVLvHG~~~~~-------------~~~w~~~l~~~L~~~Gy~V~a~---DlpG~G~~~ 109 (316)
T 3icv_A 49 VLDAGLTCQGA-SPSS--VSKPILLVPGTGTTG-------------PQSFDSNWIPLSAQLGYTPCWI---SPPPFMLND 109 (316)
T ss_dssp HHHHTEEETTB-BTTB--CSSEEEEECCTTCCH-------------HHHHTTTHHHHHHHTTCEEEEE---CCTTTTCSC
T ss_pred hHhhhEeCCCC-CCCC--CCCeEEEECCCCCCc-------------HHHHHHHHHHHHHHCCCeEEEe---cCCCCCCCc
Confidence 34455666743 2222 245688899952110 0001113566788899999994 445666542
Q ss_pred cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC---CCcccEEEEeccCCC
Q 002194 731 ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFCCGIARSGAYN 795 (954)
Q Consensus 731 ~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~~~~~ 795 (954)
.....+++.+.++.+.+... .+++.|+||||||.++.+++... +++++.+|++++...
T Consensus 110 -----~~~~~~~la~~I~~l~~~~g--~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~ 170 (316)
T 3icv_A 110 -----TQVNTEYMVNAITTLYAGSG--NNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 170 (316)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTT--SCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred -----HHHHHHHHHHHHHHHHHHhC--CCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCCC
Confidence 23345667777777776532 36899999999999998877764 589999999998765
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.38 E-value=8.1e-05 Score=82.40 Aligned_cols=188 Identities=11% Similarity=0.073 Sum_probs=121.3
Q ss_pred cceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccC
Q 002194 313 TTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (954)
Q Consensus 313 ~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~ 390 (954)
...|+++++ ++....+... .....++|++++..|+++... ...|+.++.+++..+.+.....
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~------------~~~I~r~~~~g~~~~~~~~~~~---- 158 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT------------LDRILRANLNGSNVEEVVSTGL---- 158 (386)
T ss_dssp BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCCEEEEECSSC----
T ss_pred CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCC------------CCcEEEEecCCCCcEEEEeCCC----
Confidence 345888888 4455555544 667789999988888887633 2378899999876655543211
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecc-cccCceeeccCCce
Q 002194 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCDDSLA 469 (954)
Q Consensus 391 p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~spDg~~ 469 (954)
..+..+++.+.+..| ||++. ..+.|+++++ +|...+.+.... ....++++.|++..
T Consensus 159 --------~~p~glavd~~~g~l-Y~~d~-----------~~~~I~~~~~---dg~~~~~l~~~~l~~P~giavdp~~g~ 215 (386)
T 3v65_B 159 --------ESPGGLAVDWVHDKL-YWTDS-----------GTSRIEVANL---DGAHRKVLLWQSLEKPRAIALHPMEGT 215 (386)
T ss_dssp --------SCCCCEEEETTTTEE-EEEET-----------TTTEEEECBT---TSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred --------CCccEEEEEeCCCeE-EEEcC-----------CCCeEEEEeC---CCCceEEeecCCCCCCcEEEEEcCCCe
Confidence 123467888766654 44332 2457888885 665555554332 34567899999999
Q ss_pred EEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCC
Q 002194 470 LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEG 549 (954)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (954)
|+++.+.. ..+|+++++++. ..+.+.........+ ++++|++..|++...
T Consensus 216 ly~td~~~--~~~I~r~~~dG~--~~~~~~~~~~~~PnG------lavd~~~~~lY~aD~-------------------- 265 (386)
T 3v65_B 216 IYWTDWGN--TPRIEASSMDGS--GRRIIADTHLFWPNG------LTIDYAGRRMYWVDA-------------------- 265 (386)
T ss_dssp EEEEECSS--SCEEEEEETTSC--SCEEEECSSCSCEEE------EEEEGGGTEEEEEET--------------------
T ss_pred EEEeccCC--CCEEEEEeCCCC--CcEEEEECCCCCeee------EEEeCCCCEEEEEEC--------------------
Confidence 98886544 257999999874 334443322222222 788988888888762
Q ss_pred CCCeEEEEECCCCCeEEEec
Q 002194 550 NIPFLDLFDINTGSKERIWE 569 (954)
Q Consensus 550 ~~~~l~~~d~~~g~~~~l~~ 569 (954)
....|+++|++++..+.+..
T Consensus 266 ~~~~I~~~d~dG~~~~~~~~ 285 (386)
T 3v65_B 266 KHHVIERANLDGSHRKAVIS 285 (386)
T ss_dssp TTTEEEEECTTSCSCEEEEC
T ss_pred CCCEEEEEeCCCCeeEEEEE
Confidence 12369999998766655544
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.37 E-value=7.3e-07 Score=100.41 Aligned_cols=108 Identities=11% Similarity=-0.039 Sum_probs=77.1
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHC-CcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-GFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~a 746 (954)
.|+||++||.... ....+.......|+++ ||.|++ .|..|+|.+.... .......+|+.+.
T Consensus 70 ~p~vvliHG~~~~-------------~~~~w~~~~~~~l~~~~~~~Vi~---~D~~g~G~S~~~~~~~~~~~~~~dl~~~ 133 (452)
T 1w52_X 70 RKTHFVIHGFRDR-------------GEDSWPSDMCKKILQVETTNCIS---VDWSSGAKAEYTQAVQNIRIVGAETAYL 133 (452)
T ss_dssp SCEEEEECCTTCC-------------SSSSHHHHHHHHHHTTSCCEEEE---EECHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCC-------------CCchHHHHHHHHHHhhCCCEEEE---EecccccccccHHHHHhHHHHHHHHHHH
Confidence 5889999996321 1011112234556654 999999 5666777664321 1223456788888
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
+++|.++..++.+++.|+|||+||.+|+.++.+.|++++++|.++|.
T Consensus 134 i~~L~~~~g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa 180 (452)
T 1w52_X 134 IQQLLTELSYNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPA 180 (452)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred HHHHHHhcCCCcccEEEEEeCHHHHHHHHHHHhcccceeeEEecccc
Confidence 88887654456789999999999999999999999999999999875
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.1e-05 Score=82.16 Aligned_cols=180 Identities=11% Similarity=0.083 Sum_probs=117.0
Q ss_pred ceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhh
Q 002194 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (954)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (954)
...|+.+++++.+...+...... ...++|.+++..|+++- .
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~-----~~~l~~d~~~~~ly~~D---------------------~------------- 92 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLEN-----AIALDFHHRRELVFWSD---------------------V------------- 92 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSC-----EEEEEEETTTTEEEEEE---------------------T-------------
T ss_pred ccceEEEeCCCCeeEEeecCCCc-----eEEEEEeccccEEEEEe---------------------c-------------
Confidence 45689999988776655433322 45789998888888761 0
Q ss_pred hccCccccccccccccceEEEEEeC-CceeEcC-CC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc
Q 002194 298 LLKDEYDEDLFDYYATTQLVLVSLD-GTVKEIG-PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (954)
Q Consensus 298 ~l~~~~d~~~~~~~~~~~l~~~~~~-G~~~~l~-~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~ 374 (954)
....|++++++ +..+.+. .. ....++++.++++.|+++.... ..|++.+++
T Consensus 93 --------------~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~------------~~I~~~~~d 146 (349)
T 3v64_C 93 --------------TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT------------SRIEVANLD 146 (349)
T ss_dssp --------------TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTT------------TEEEEEETT
T ss_pred --------------cCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCC------------CeEEEEcCC
Confidence 23458899984 4444433 23 4556778888888888876332 378899998
Q ss_pred CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec
Q 002194 375 GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL 454 (954)
Q Consensus 375 g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~ 454 (954)
|+..+.+..... ..++.+++.|++.. +||++.. ....|+++++ +|...+.+...
T Consensus 147 G~~~~~l~~~~l------------~~P~~iavdp~~g~-ly~td~~----------~~~~I~r~~~---dG~~~~~~~~~ 200 (349)
T 3v64_C 147 GAHRKVLLWQSL------------EKPRAIALHPMEGT-IYWTDWG----------NTPRIEASSM---DGSGRRIIADT 200 (349)
T ss_dssp SCSCEEEECTTC------------SCEEEEEEETTTTE-EEEEECS----------SSCEEEEEET---TSCSCEESCCS
T ss_pred CCceEEEEeCCC------------CCcceEEEecCcCe-EEEeccC----------CCCEEEEEeC---CCCCcEEEEEC
Confidence 876554433111 23457889987764 4553321 1257999986 66655555332
Q ss_pred -ccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 455 -DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 455 -~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
-....+++|+|+++.|+++.... .+|++++.++.
T Consensus 201 ~~~~PnGla~d~~~~~lY~aD~~~---~~I~~~~~dG~ 235 (349)
T 3v64_C 201 HLFWPNGLTIDYAGRRMYWVDAKH---HVIERANLDGS 235 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTT---TEEEEEETTSC
T ss_pred CCCCcceEEEeCCCCEEEEEECCC---CEEEEEeCCCC
Confidence 33356799999999998885433 57999999874
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=0.0002 Score=76.80 Aligned_cols=225 Identities=11% Similarity=0.070 Sum_probs=131.7
Q ss_pred cceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC----ceEEEeccCCC
Q 002194 313 TTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG----IFVRELCDLPL 386 (954)
Q Consensus 313 ~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g----~~~~~l~~~~~ 386 (954)
...|.++++ +++...+... .....++|+++++.|+++... ...|+.+++++ +..+.+....
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~------------~~~I~~~~~~g~~~~~~~~~~~~~~- 75 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------------QRMICSTQLDRAHGVSSYDTVISRD- 75 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT------------TTEEEEEEC--------CEEEECSS-
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECC------------CCcEEEEECCCCCCCcccEEEEeCC-
Confidence 345889998 5554444444 666789999998888887633 23788888886 3323322110
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEee-cccccCceeecc
Q 002194 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCD 465 (954)
Q Consensus 387 ~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~~~~~~~~~~sp 465 (954)
...+..+++.+.+..| ||++. ..+.|.+++. +|...+.+.. ......+++..|
T Consensus 76 -----------~~~p~glavd~~~~~l-y~~d~-----------~~~~I~~~~~---~g~~~~~~~~~~~~~P~~iavdp 129 (316)
T 1ijq_A 76 -----------IQAPDGLAVDWIHSNI-YWTDS-----------VLGTVSVADT---KGVKRKTLFRENGSKPRAIVVDP 129 (316)
T ss_dssp -----------CSCCCEEEEETTTTEE-EEEET-----------TTTEEEEEET---TSSSEEEEEECTTCCEEEEEEET
T ss_pred -----------CCCcCEEEEeecCCeE-EEEEC-----------CCCEEEEEeC---CCCceEEEEECCCCCcceEEeCC
Confidence 0233567887766654 55332 2457888885 6655555543 334556789999
Q ss_pred CCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCC
Q 002194 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGA 545 (954)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~ 545 (954)
+++.|+++.+.. ..+|+++++++. ..+.+.........+ ++++++++.|++...
T Consensus 130 ~~g~ly~~d~~~--~~~I~~~~~dG~--~~~~~~~~~~~~P~g------la~d~~~~~lY~~D~---------------- 183 (316)
T 1ijq_A 130 VHGFMYWTDWGT--PAKIKKGGLNGV--DIYSLVTENIQWPNG------ITLDLLSGRLYWVDS---------------- 183 (316)
T ss_dssp TTTEEEEEECSS--SCEEEEEETTSC--CEEEEECSSCSCEEE------EEEETTTTEEEEEET----------------
T ss_pred CCCEEEEEccCC--CCeEEEEcCCCC--CeEEEEECCCCCceE------EEEeccCCEEEEEEC----------------
Confidence 988888876543 257999999874 333343322222122 788999888888762
Q ss_pred CCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCc
Q 002194 546 TPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (954)
Q Consensus 546 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~ 620 (954)
....|+++|++++..+.+...... ..... .+..+++.++++.. ....+++++..+|+
T Consensus 184 ----~~~~I~~~d~dg~~~~~~~~~~~~--~~~P~---------giav~~~~ly~~d~---~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 184 ----KLHSISSIDVNGGNRKTILEDEKR--LAHPF---------SLAVFEDKVFWTDI---INEAIFSANRLTGS 240 (316)
T ss_dssp ----TTTEEEEEETTSCSCEEEEECTTT--TSSEE---------EEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred ----CCCeEEEEecCCCceEEEeecCCc--cCCcE---------EEEEECCEEEEEEC---CCCeEEEEeCCCCc
Confidence 123699999987666655443211 00111 12234556665443 23567777765554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=0.0001 Score=79.18 Aligned_cols=180 Identities=14% Similarity=-0.011 Sum_probs=113.6
Q ss_pred ceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhh
Q 002194 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (954)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (954)
...|.++++++++...+...... ...++|.++++.|+++-.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~-----p~g~~~d~~~~~ly~~D~---------------------------------- 49 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSDL---------------------------------- 49 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSS-----EEEEEEETTTTEEEEEET----------------------------------
T ss_pred CCeEEEEECCCcceEehhcCCCc-----eEEEEEEeCCCEEEEEEC----------------------------------
Confidence 45789999998776555432221 458899998888887710
Q ss_pred hccCccccccccccccceEEEEEeCC-----ceeEc-CCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEE
Q 002194 298 LLKDEYDEDLFDYYATTQLVLVSLDG-----TVKEI-GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (954)
Q Consensus 298 ~l~~~~d~~~~~~~~~~~l~~~~~~G-----~~~~l-~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l 370 (954)
....|++++++| ....+ ... ....++++.++++.|+++... ...|.+
T Consensus 50 --------------~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~------------~~~I~~ 103 (316)
T 1ijq_A 50 --------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSV 103 (316)
T ss_dssp --------------TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEE
T ss_pred --------------CCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECC------------CCEEEE
Confidence 234588888843 22332 222 445677888878888776532 237888
Q ss_pred EeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceE
Q 002194 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (954)
Q Consensus 371 ~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (954)
++++|+..+.+..... ..++.++..|++.. +||++.. ....|+++++ +|...+.
T Consensus 104 ~~~~g~~~~~~~~~~~------------~~P~~iavdp~~g~-ly~~d~~----------~~~~I~~~~~---dG~~~~~ 157 (316)
T 1ijq_A 104 ADTKGVKRKTLFRENG------------SKPRAIVVDPVHGF-MYWTDWG----------TPAKIKKGGL---NGVDIYS 157 (316)
T ss_dssp EETTSSSEEEEEECTT------------CCEEEEEEETTTTE-EEEEECS----------SSCEEEEEET---TSCCEEE
T ss_pred EeCCCCceEEEEECCC------------CCcceEEeCCCCCE-EEEEccC----------CCCeEEEEcC---CCCCeEE
Confidence 9998876555543111 23457889887764 4553321 1357899885 6655555
Q ss_pred Eeec-ccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 451 LHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 451 l~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+... -....+++|+++++.|+++.... .+|++++.++.
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D~~~---~~I~~~d~dg~ 196 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVDSKL---HSISSIDVNGG 196 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTT---TEEEEEETTSC
T ss_pred EEECCCCCceEEEEeccCCEEEEEECCC---CeEEEEecCCC
Confidence 5332 23456799999999998875433 57999999874
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.9e-06 Score=89.77 Aligned_cols=103 Identities=16% Similarity=0.006 Sum_probs=69.2
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~ 749 (954)
.|.||++||...... . .....| ......|.++||.|+. .+..|+|.+. .......+|+.++++.
T Consensus 7 ~~~vvlvHG~~~~~~-----~-~~~~~~----~~~~~~L~~~G~~v~~---~d~~g~g~s~---~~~~~~~~~i~~~~~~ 70 (285)
T 1ex9_A 7 KYPIVLAHGMLGFDN-----I-LGVDYW----FGIPSALRRDGAQVYV---TEVSQLDTSE---VRGEQLLQQVEEIVAL 70 (285)
T ss_dssp SSCEEEECCTTCCSE-----E-TTEESS----TTHHHHHHHTTCCEEE---ECCCSSSCHH---HHHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCCCcc-----c-cccccH----HHHHHHHHhCCCEEEE---EeCCCCCCch---hhHHHHHHHHHHHHHH
Confidence 477889999632110 0 000112 1356678899999999 4555676653 1223444444444443
Q ss_pred HHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCC
Q 002194 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (954)
Q Consensus 750 l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (954)
+ +.+++.++||||||.++..++.++|++++++|.+++..
T Consensus 71 ~------~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p~ 109 (285)
T 1ex9_A 71 S------GQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPH 109 (285)
T ss_dssp H------CCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred h------CCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCCC
Confidence 3 34689999999999999999999999999999999853
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.0002 Score=77.99 Aligned_cols=188 Identities=11% Similarity=0.063 Sum_probs=119.7
Q ss_pred cceEEEEEeCC-ceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccC
Q 002194 313 TTQLVLVSLDG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (954)
Q Consensus 313 ~~~l~~~~~~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~ 390 (954)
...|++++++| ....+... .....++|++++..|+++... ...|+.++.+++..+.+.....
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~------------~~~I~r~~~~g~~~~~~~~~~~---- 115 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT------------LDRILRANLNGSNVEEVVSTGL---- 115 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCSCEEEECSSC----
T ss_pred ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEecc------------CCceEEEecCCCCceEEEeCCC----
Confidence 34588888844 44444444 566788999988888887633 2378889988876555433111
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-ccccCceeeccCCce
Q 002194 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLA 469 (954)
Q Consensus 391 p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~spDg~~ 469 (954)
..+..+++.+.+..| ||++. ..+.|+++++ +|...+.+... .....++++.|++..
T Consensus 116 --------~~p~glavd~~~g~l-y~~d~-----------~~~~I~~~~~---dG~~~~~l~~~~l~~P~~iavdp~~g~ 172 (349)
T 3v64_C 116 --------ESPGGLAVDWVHDKL-YWTDS-----------GTSRIEVANL---DGAHRKVLLWQSLEKPRAIALHPMEGT 172 (349)
T ss_dssp --------SCCCEEEEETTTTEE-EEEET-----------TTTEEEEEET---TSCSCEEEECTTCSCEEEEEEETTTTE
T ss_pred --------CCccEEEEecCCCeE-EEEcC-----------CCCeEEEEcC---CCCceEEEEeCCCCCcceEEEecCcCe
Confidence 123467888766654 44332 2457888885 66655555433 234567899999999
Q ss_pred EEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCC
Q 002194 470 LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEG 549 (954)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (954)
|+++.+.. ..+|+++++++. ..+.+.........+ ++++|++..|++...
T Consensus 173 ly~td~~~--~~~I~r~~~dG~--~~~~~~~~~~~~PnG------la~d~~~~~lY~aD~-------------------- 222 (349)
T 3v64_C 173 IYWTDWGN--TPRIEASSMDGS--GRRIIADTHLFWPNG------LTIDYAGRRMYWVDA-------------------- 222 (349)
T ss_dssp EEEEECSS--SCEEEEEETTSC--SCEESCCSSCSCEEE------EEEETTTTEEEEEET--------------------
T ss_pred EEEeccCC--CCEEEEEeCCCC--CcEEEEECCCCCcce------EEEeCCCCEEEEEEC--------------------
Confidence 98886554 257999999874 334433222221122 788998888888762
Q ss_pred CCCeEEEEECCCCCeEEEec
Q 002194 550 NIPFLDLFDINTGSKERIWE 569 (954)
Q Consensus 550 ~~~~l~~~d~~~g~~~~l~~ 569 (954)
....|+++|++++..+.+..
T Consensus 223 ~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 223 KHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp TTTEEEEEETTSCSCEEEEC
T ss_pred CCCEEEEEeCCCCceEEEEe
Confidence 12369999998766555543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00016 Score=80.44 Aligned_cols=180 Identities=14% Similarity=0.000 Sum_probs=115.9
Q ss_pred ceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhh
Q 002194 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (954)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (954)
...|++++++++....+...... ...++|.+++..||++-.
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~~~-----~~~l~~d~~~~~lywsD~---------------------------------- 131 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSDL---------------------------------- 131 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSCSC-----EEEEEEETTTTEEEEEET----------------------------------
T ss_pred cceeEEEccCCcceeEeccccCc-----ceEEeeeeccCceEEEec----------------------------------
Confidence 56899999998776666443322 457899998888887710
Q ss_pred hccCccccccccccccceEEEEEeCC-----ceeEc-CCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEE
Q 002194 298 LLKDEYDEDLFDYYATTQLVLVSLDG-----TVKEI-GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (954)
Q Consensus 298 ~l~~~~d~~~~~~~~~~~l~~~~~~G-----~~~~l-~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l 370 (954)
....|++++++| ....+ ... ....++++.+.++.|+++... ...|++
T Consensus 132 --------------~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~------------~~~I~~ 185 (400)
T 3p5b_L 132 --------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSV 185 (400)
T ss_dssp --------------TTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETT------------TTEEEE
T ss_pred --------------CCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECC------------CCeEEE
Confidence 224577888743 22333 323 455667788777777777532 237888
Q ss_pred EeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceE
Q 002194 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (954)
Q Consensus 371 ~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (954)
.+++|+..+.+..... ..++.++..|.+.. +||++.. ....|+++++ +|...+.
T Consensus 186 ~~~~g~~~~~l~~~~~------------~~P~~iavdp~~g~-ly~td~~----------~~~~I~~~~~---dG~~~~~ 239 (400)
T 3p5b_L 186 ADTKGVKRKTLFRENG------------SKPRAIVVDPVHGF-MYWTDWG----------TPAKIKKGGL---NGVDIYS 239 (400)
T ss_dssp ECTTTCSEEEEEECSS------------CCEEEEEEETTTTE-EEEEECS----------SSCCEEEEET---TSCSCEE
T ss_pred EeCCCCceEEEEeCCC------------CCcceEEEecccCe-EEEEeCC----------CCCEEEEEeC---CCCccEE
Confidence 9998876655543211 23457888887664 4553321 1347899986 6666666
Q ss_pred Eeecc-cccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 451 LHKLD-LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 451 l~~~~-~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+.... ....+++++++++.|+++.... .+|+.++.++.
T Consensus 240 ~~~~~l~~P~glavd~~~~~lY~aD~~~---~~I~~~d~dG~ 278 (400)
T 3p5b_L 240 LVTENIQWPNGITLDLLSGRLYWVDSKL---HSISSIDVNGG 278 (400)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTT---TEEEEEETTSC
T ss_pred EEECCCCceEEEEEEeCCCEEEEEECCC---CEEEEEeCCCC
Confidence 64332 3457799999999998874332 57999999875
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00018 Score=75.44 Aligned_cols=182 Identities=13% Similarity=0.035 Sum_probs=106.9
Q ss_pred CCCceEEEEEECCCCceeecccCCC-ccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeec
Q 002194 215 SSSKLRVWVADVDTGKARPLFQSPD-IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVR 293 (954)
Q Consensus 215 ~~~~~~l~~~d~~~g~~~~lt~~~~-~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 293 (954)
+.+...|+++|.++|+...-...+. .. ...+.++|||++|+ +
T Consensus 11 ~~~~~~v~~~d~~tG~~~w~~~~~~~~~----~~~~~~~pdG~ilv-s-------------------------------- 53 (276)
T 3no2_A 11 GSGWNKIAIINKDTKEIVWEYPLEKGWE----CNSVAATKAGEILF-S-------------------------------- 53 (276)
T ss_dssp CTTCSEEEEEETTTTEEEEEEECCTTCC----CCEEEECTTSCEEE-E--------------------------------
T ss_pred eCCCCEEEEEECCCCeEEEEeCCCccCC----CcCeEECCCCCEEE-e--------------------------------
Confidence 3457889999987777654433332 11 45788999999777 4
Q ss_pred hhhhhccCccccccccccccceEEEEEeCCc-eeEcCCC--ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEE
Q 002194 294 TFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (954)
Q Consensus 294 ~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~-~~~l~~~--~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l 370 (954)
....++.+|.+|+ ..++..+ ..+.+..++|||+.|+..+.. ...++.
T Consensus 54 ------------------~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~------------~~~v~~ 103 (276)
T 3no2_A 54 ------------------YSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGH------------PSTILE 103 (276)
T ss_dssp ------------------CBSEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST------------TEEEEE
T ss_pred ------------------CCCCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecCC------------CCEEEE
Confidence 1112445555442 2223222 345567899999998876631 126777
Q ss_pred EeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceE
Q 002194 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (954)
Q Consensus 371 ~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (954)
++.+|+....+...... + ......+.++..+||+.++.. ...+.|+.++. +|.....
T Consensus 104 vd~~Gk~l~~~~~~~~~---~----~~~~~~~~v~~~~~G~~lv~~-------------~~~~~v~~~d~---~G~~~w~ 160 (276)
T 3no2_A 104 VNMKGEVLSKTEFETGI---E----RPHAQFRQINKNKKGNYLVPL-------------FATSEVREIAP---NGQLLNS 160 (276)
T ss_dssp ECTTSCEEEEEEECCSC---S----SGGGSCSCCEECTTSCEEEEE-------------TTTTEEEEECT---TSCEEEE
T ss_pred EeCCCCEEEEEeccCCC---C----cccccccCceECCCCCEEEEe-------------cCCCEEEEECC---CCCEEEE
Confidence 78777766555432110 0 011123456788999855433 23557888885 5433333
Q ss_pred EeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 451 LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 451 l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+ ........+...++|..|+.... + .+|+.+|.++|
T Consensus 161 ~-~~~~~~~~~~~~~~g~~~v~~~~-~---~~v~~~d~~tG 196 (276)
T 3no2_A 161 V-KLSGTPFSSAFLDNGDCLVACGD-A---HCFVQLNLESN 196 (276)
T ss_dssp E-ECSSCCCEEEECTTSCEEEECBT-T---SEEEEECTTTC
T ss_pred E-ECCCCccceeEcCCCCEEEEeCC-C---CeEEEEeCcCC
Confidence 3 22334456777889987766432 2 46999999975
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.4e-06 Score=95.65 Aligned_cols=108 Identities=13% Similarity=-0.102 Sum_probs=74.1
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHH-HHCCcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW-LARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~a 746 (954)
.|+||++||.... ....+.......| +..+|.|++ .|..|+|.+.... .......+++.+.
T Consensus 69 ~p~vvliHG~~~s-------------~~~~w~~~l~~~ll~~~~~~VI~---vD~~g~g~s~y~~~~~~~~~v~~~la~l 132 (449)
T 1hpl_A 69 RKTRFIIHGFIDK-------------GEESWLSTMCQNMFKVESVNCIC---VDWKSGSRTAYSQASQNVRIVGAEVAYL 132 (449)
T ss_dssp SEEEEEECCCCCT-------------TCTTHHHHHHHHHHHHCCEEEEE---EECHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCC-------------CCccHHHHHHHHHHhcCCeEEEE---EeCCcccCCccHHHHHHHHHHHHHHHHH
Confidence 5899999995311 0011111123344 457999999 5556666653221 1123345677788
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
+++|.++..++.+++.|+||||||.+|+.++.+.|++++.++.+.|.
T Consensus 133 l~~L~~~~g~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa 179 (449)
T 1hpl_A 133 VGVLQSSFDYSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPA 179 (449)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred HHHHHHhcCCCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCcc
Confidence 88886543456789999999999999999999999999999988875
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00018 Score=76.10 Aligned_cols=192 Identities=13% Similarity=0.088 Sum_probs=105.5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..+.++|||+ |+++.. +...|++++.+ ++.+.+...... ..+..+.+.+||++.+.. .
T Consensus 58 ~~~~i~~~~~g~-l~v~~~--------~~~~i~~~~~~-g~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~-~------ 117 (299)
T 2z2n_A 58 KVMCLTISSDGE-VWFTEN--------AANKIGRITKK-GIIKEYTLPNPD---SAPYGITEGPNGDIWFTE-M------ 117 (299)
T ss_dssp CEEEEEECTTSC-EEEEET--------TTTEEEEECTT-SCEEEEECSSTT---CCEEEEEECTTSCEEEEE-T------
T ss_pred ceeeEEECCCCC-EEEeCC--------CCCeEEEECCC-CcEEEEeCCCcC---CCceeeEECCCCCEEEEe-c------
Confidence 566788999997 444321 24578999987 444433211111 014577788888754432 0
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCC--C-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP--P-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~--~-~~~~~~~~SpDGk~l 346 (954)
....|++++.+|+...+.. . .....+++++||+..
T Consensus 118 ------------------------------------------~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~ 155 (299)
T 2z2n_A 118 ------------------------------------------NGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALW 155 (299)
T ss_dssp ------------------------------------------TTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEE
T ss_pred ------------------------------------------CCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEE
Confidence 1234677777555444322 2 445678899999644
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
+ .... ...+++++. +++...+.. +.. ...+..+.+++||+ + |+.+
T Consensus 156 v-~~~~------------~~~i~~~~~-~g~~~~~~~-~~~----------~~~~~~i~~~~~g~-l-~v~~-------- 200 (299)
T 2z2n_A 156 F-TENQ------------NNAIGRITE-SGDITEFKI-PTP----------ASGPVGITKGNDDA-L-WFVE-------- 200 (299)
T ss_dssp E-EETT------------TTEEEEECT-TCCEEEEEC-SST----------TCCEEEEEECTTSS-E-EEEE--------
T ss_pred E-EeCC------------CCEEEEEcC-CCcEEEeeC-CCC----------CCcceeEEECCCCC-E-EEEc--------
Confidence 3 3311 127888888 444443311 100 02345688999987 3 3321
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEee--cccccCceeeccCCceEEEEEeccccceEEEEEcCC
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~ 489 (954)
...+.|++++. + ++...+.. ....+..++++++|+ |+++.... ..|++++.+
T Consensus 201 ---~~~~~i~~~~~---~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~---~~i~~~d~~ 254 (299)
T 2z2n_A 201 ---IIGNKIGRITT---S-GEITEFKIPTPNARPHAITAGAGID-LWFTEWGA---NKIGRLTSN 254 (299)
T ss_dssp ---TTTTEEEEECT---T-CCEEEEECSSTTCCEEEEEECSTTC-EEEEETTT---TEEEEEETT
T ss_pred ---cCCceEEEECC---C-CcEEEEECCCCCCCceeEEECCCCC-EEEeccCC---ceEEEECCC
Confidence 12447888873 3 33333321 223456788999987 55443222 458888874
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0045 Score=72.67 Aligned_cols=166 Identities=13% Similarity=0.097 Sum_probs=100.2
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-ccccCceeeccCCceEEEEEecccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLALVYESWYKTR 479 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~spDg~~l~~~~~~~~~ 479 (954)
+..+.|.+.+.. +||++. ..+.|+.++. +|...+.+... -....++++.+.++.|+++....
T Consensus 351 ~~~ld~d~~~~~-ly~sD~-----------~~~~I~r~~~---~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~-- 413 (619)
T 3s94_A 351 AIAIDYDPVEGY-IYWTDD-----------EVRAIRRSFI---DGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGT-- 413 (619)
T ss_dssp EEEEEEETTTTE-EEEEET-----------TTTEEEEEET---TSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTT--
T ss_pred cEEEEEEcCCCe-EEEEeC-----------CCCeEEEEEc---CCCccEEEEECCCCCcCceEEecccCcEEEEeCCC--
Confidence 345778876554 455332 2457888885 56555555433 34567889988888888874332
Q ss_pred ceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEEC
Q 002194 480 RTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDI 559 (954)
Q Consensus 480 ~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 559 (954)
.+|.++++++. ..+.+.........+ +++.|...+|+|... +..+.|++.++
T Consensus 414 -~~I~v~~~~G~--~~~~l~~~~l~~P~~------iavdp~~G~ly~tD~-------------------g~~~~I~r~~~ 465 (619)
T 3s94_A 414 -DRIEVTRLNGT--MRKILISEDLEEPRA------IVLDPMVGYMYWTDW-------------------GEIPKIERAAL 465 (619)
T ss_dssp -TEEEEEETTSC--SCEEEECTTCCSEEE------EEEETTTTEEEEEEC-------------------SSSCEEEEEET
T ss_pred -CcEEEEeCCCC--eEEEEEECCCCCeee------EEEEcCCCcEEEecC-------------------CCCCEEEEEcc
Confidence 57899999875 334444332222122 566776566766652 12356999999
Q ss_pred CCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEee
Q 002194 560 NTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQIT 625 (954)
Q Consensus 560 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt 625 (954)
++...+.+....-. ... +.++++++++|++.-.. ...|..+++++...+.+.
T Consensus 466 dG~~~~~l~~~~l~----~P~-------GlalD~~~~~LY~aD~~---~~~I~~~~~dG~~~~~~~ 517 (619)
T 3s94_A 466 DGSDRVVLVNTSLG----WPN-------GLALDYDEGKIYWGDAK---TDKIEVMNTDGTGRRVLV 517 (619)
T ss_dssp TSCSCEEEECSSCS----CEE-------EEEEETTTTEEEEEETT---TTEEEEEESSSCCCEEEE
T ss_pred CCCccEEEEeCCCC----CCe-------eeEEcccCCEEEEEECC---CCEEEEEecCCCceEEEe
Confidence 87766655543211 111 24678888888876443 347888988766555553
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.21 E-value=3.2e-06 Score=90.97 Aligned_cols=88 Identities=17% Similarity=0.163 Sum_probs=64.5
Q ss_pred HHHHHHHHCCcE---EEEcCCCCCCCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHH
Q 002194 703 TSVLLWLARGFA---ILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLL 777 (954)
Q Consensus 703 ~~~~~la~~G~~---V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a 777 (954)
.....|+++||. |+. .+..|+|.+.... .......+++.+.++.+.+.. ..+++.|+||||||.++..++
T Consensus 72 ~l~~~L~~~Gy~~~~V~~---~D~~g~G~S~~~~~~~~~~~~~~~l~~~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a 146 (342)
T 2x5x_A 72 SVYAELKARGYNDCEIFG---VTYLSSSEQGSAQYNYHSSTKYAIIKTFIDKVKAYT--GKSQVDIVAHSMGVSMSLATL 146 (342)
T ss_dssp CHHHHHHHTTCCTTSEEE---ECCSCHHHHTCGGGCCBCHHHHHHHHHHHHHHHHHH--TCSCEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEE---EeCCCCCccCCccccCCHHHHHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHH
Confidence 356778899998 888 4555655542221 112445677777777777653 235899999999999999999
Q ss_pred HhC--CCcccEEEEeccCCC
Q 002194 778 AHA--PHLFCCGIARSGAYN 795 (954)
Q Consensus 778 ~~~--p~~~~a~v~~~~~~~ 795 (954)
.++ |++++++|++++...
T Consensus 147 ~~~~~p~~V~~lVlla~p~~ 166 (342)
T 2x5x_A 147 QYYNNWTSVRKFINLAGGIR 166 (342)
T ss_dssp HHHTCGGGEEEEEEESCCTT
T ss_pred HHcCchhhhcEEEEECCCcc
Confidence 988 889999999987643
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00026 Score=78.62 Aligned_cols=225 Identities=11% Similarity=0.074 Sum_probs=134.2
Q ss_pred cceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc----eEEEeccCCC
Q 002194 313 TTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI----FVRELCDLPL 386 (954)
Q Consensus 313 ~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~----~~~~l~~~~~ 386 (954)
...|.++++ .+....+... .....++|++++..|+++.... ..|+.+++++. ....+....
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~------------~~I~~~~~~g~~~~~~~~~~~~~~- 157 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQ------------RMICSTQLDRAHGVSSYDTVISRD- 157 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTT------------TEEEEEEC------CCCEEEECSS-
T ss_pred cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCC------------CeEEEEEcccCCCCCcceEEEeCC-
Confidence 456888888 4444555444 6677889999888888876332 36888888763 222222211
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-ccccCceeecc
Q 002194 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCD 465 (954)
Q Consensus 387 ~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~sp 465 (954)
...+..+++.+.+.. +||++. ..+.|.++++ +|...+.+... .....+++..|
T Consensus 158 -----------~~~p~glavD~~~~~-lY~~d~-----------~~~~I~~~~~---~g~~~~~l~~~~~~~P~~iavdp 211 (400)
T 3p5b_L 158 -----------IQAPDGLAVDWIHSN-IYWTDS-----------VLGTVSVADT---KGVKRKTLFRENGSKPRAIVVDP 211 (400)
T ss_dssp -----------CSCEEEEEEETTTTE-EEEEET-----------TTTEEEEECT---TTCSEEEEEECSSCCEEEEEEET
T ss_pred -----------CCCcccEEEEecCCc-eEEEEC-----------CCCeEEEEeC---CCCceEEEEeCCCCCcceEEEec
Confidence 022345677765554 455332 2457888885 66666555443 33456789999
Q ss_pred CCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCC
Q 002194 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGA 545 (954)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~ 545 (954)
.+..|+++.+... .+|+++++++. ..+.+.........+ +++++++..|+|...
T Consensus 212 ~~g~ly~td~~~~--~~I~~~~~dG~--~~~~~~~~~l~~P~g------lavd~~~~~lY~aD~---------------- 265 (400)
T 3p5b_L 212 VHGFMYWTDWGTP--AKIKKGGLNGV--DIYSLVTENIQWPNG------ITLDLLSGRLYWVDS---------------- 265 (400)
T ss_dssp TTTEEEEEECSSS--CCEEEEETTSC--SCEEEECSSCSCEEE------EEEETTTTEEEEEET----------------
T ss_pred ccCeEEEEeCCCC--CEEEEEeCCCC--ccEEEEECCCCceEE------EEEEeCCCEEEEEEC----------------
Confidence 9888988865432 57999999884 334443332222222 788888888888752
Q ss_pred CCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCc
Q 002194 546 TPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (954)
Q Consensus 546 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~ 620 (954)
....|+.+|++++..+.+...... ... ...+..+++.++++-+. ...|++++..+|+
T Consensus 266 ----~~~~I~~~d~dG~~~~~~~~~~~~--l~~---------P~gl~v~~~~lywtd~~---~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 266 ----KLHSISSIDVNGGNRKTILEDEKR--LAH---------PFSLAVFEDKVFWTDII---NEAIFSANRLTGS 322 (400)
T ss_dssp ----TTTEEEEEETTSCCCEEEEECSST--TSS---------EEEEEEETTEEEEEESS---SCSEEEEESSSCC
T ss_pred ----CCCEEEEEeCCCCccEEEEeCCCC--CCC---------CEEEEEeCCEEEEecCC---CCeEEEEEcCCCC
Confidence 134699999988777666543221 000 12234456667665532 3457777755554
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00073 Score=71.26 Aligned_cols=191 Identities=16% Similarity=0.109 Sum_probs=106.0
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..+.++|||+ |++... ....|++++.+ ++...+...... ..+..+++++||++.+.. .
T Consensus 16 ~~~~i~~d~~g~-l~v~~~--------~~~~v~~~d~~-~~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~-~------ 75 (299)
T 2z2n_A 16 GPYGITVSDKGK-VWITQH--------KANMISCINLD-GKITEYPLPTPD---AKVMCLTISSDGEVWFTE-N------ 75 (299)
T ss_dssp CEEEEEECTTSC-EEEEET--------TTTEEEEECTT-CCEEEEECSSTT---CCEEEEEECTTSCEEEEE-T------
T ss_pred CccceEECCCCC-EEEEec--------CCCcEEEEcCC-CCeEEecCCccc---CceeeEEECCCCCEEEeC-C------
Confidence 467788899997 444321 24579999988 665544321111 115578888999755433 0
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCC--C-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP--P-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~--~-~~~~~~~~SpDGk~l 346 (954)
....|++++.+|..+.+.. . .....++++|||+..
T Consensus 76 ------------------------------------------~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~ 113 (299)
T 2z2n_A 76 ------------------------------------------AANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIW 113 (299)
T ss_dssp ------------------------------------------TTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEE
T ss_pred ------------------------------------------CCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEE
Confidence 1234667776554443331 2 455678889998644
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
+... . ...+++++.++. ...+.... . ...+..+++.+||+ +++. .
T Consensus 114 v~~~-~------------~~~i~~~d~~g~-~~~~~~~~-~----------~~~~~~i~~~~~g~-l~v~-~-------- 158 (299)
T 2z2n_A 114 FTEM-N------------GNRIGRITDDGK-IREYELPN-K----------GSYPSFITLGSDNA-LWFT-E-------- 158 (299)
T ss_dssp EEET-T------------TTEEEEECTTCC-EEEEECSS-T----------TCCEEEEEECTTSC-EEEE-E--------
T ss_pred EEec-C------------CceEEEECCCCC-EEEecCCC-C----------CCCCceEEEcCCCC-EEEE-e--------
Confidence 3332 1 126888888443 33322110 0 02345688999985 3332 1
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEe--ecccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
...+.|++++. .++...+. ........++++++|+ |+++.... ..|++++.
T Consensus 159 ---~~~~~i~~~~~----~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~---~~i~~~~~ 211 (299)
T 2z2n_A 159 ---NQNNAIGRITE----SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIG---NKIGRITT 211 (299)
T ss_dssp ---TTTTEEEEECT----TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTT---TEEEEECT
T ss_pred ---CCCCEEEEEcC----CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCC---ceEEEECC
Confidence 12347888873 34444331 1223345688899987 44443222 46899998
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00017 Score=75.73 Aligned_cols=80 Identities=15% Similarity=0.003 Sum_probs=47.4
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..|++++..+ | ....++.. ........+.++|||+.|+ +. ...|+.+|.++....++.......
T Consensus 15 ~~v~~~d~~t-G--~~~w~~~~-~~~~~~~~~~~~pdG~ilv-s~----------~~~V~~~d~~G~~~W~~~~~~~~~- 78 (276)
T 3no2_A 15 NKIAIINKDT-K--EIVWEYPL-EKGWECNSVAATKAGEILF-SY----------SKGAKMITRDGRELWNIAAPAGCE- 78 (276)
T ss_dssp SEEEEEETTT-T--EEEEEEEC-CTTCCCCEEEECTTSCEEE-EC----------BSEEEEECTTSCEEEEEECCTTCE-
T ss_pred CEEEEEECCC-C--eEEEEeCC-CccCCCcCeEECCCCCEEE-eC----------CCCEEEECCCCCEEEEEcCCCCcc-
Confidence 4788888643 2 22333331 1112467788999998665 21 346888898544444443321111
Q ss_pred cccccceeEecCCeEEEEE
Q 002194 243 NAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~ 261 (954)
+..+.+++||++|+..
T Consensus 79 ---~~~~~~~~dG~~lv~~ 94 (276)
T 3no2_A 79 ---MQTARILPDGNALVAW 94 (276)
T ss_dssp ---EEEEEECTTSCEEEEE
T ss_pred ---ccccEECCCCCEEEEe
Confidence 4577899999988865
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00014 Score=77.90 Aligned_cols=186 Identities=12% Similarity=0.059 Sum_probs=113.9
Q ss_pred ceEEEEEECCCCc--eeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechh
Q 002194 218 KLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTF 295 (954)
Q Consensus 218 ~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 295 (954)
...|.+++++++. ...+...... ...+.|.+.+..|+++-.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~-----~~~ld~d~~~~~lyw~D~-------------------------------- 54 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLED-----AAAVDFVFSHGLIYWSDV-------------------------------- 54 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEE-----EEEEEEEGGGTEEEEEET--------------------------------
T ss_pred cCeEEEEECCCCceEEEEEecCCCc-----cEEEEEEeCCCEEEEEEC--------------------------------
Confidence 5689999998863 2222111111 347889988777887610
Q ss_pred hhhccCccccccccccccceEEEEEeCCc---eeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEE
Q 002194 296 QDLLKDEYDEDLFDYYATTQLVLVSLDGT---VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVW 371 (954)
Q Consensus 296 ~d~l~~~~d~~~~~~~~~~~l~~~~~~G~---~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~ 371 (954)
....|++++++|. ...+... ....++++.+.+..|+++... ...|+++
T Consensus 55 ----------------~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~------------~~~I~~~ 106 (318)
T 3sov_A 55 ----------------SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSE------------TNRIEVS 106 (318)
T ss_dssp ----------------TTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETT------------TTEEEEE
T ss_pred ----------------CCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECC------------CCEEEEE
Confidence 2345888888432 1222222 445567888878888776532 2378899
Q ss_pred eccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE
Q 002194 372 TTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL 451 (954)
Q Consensus 372 d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l 451 (954)
+++|...+.+..... ..++.++..|++.. +||++. .....|+++++ +|...+.+
T Consensus 107 ~~dG~~~~~l~~~~~------------~~P~giavdp~~g~-ly~td~----------~~~~~I~r~~~---dG~~~~~~ 160 (318)
T 3sov_A 107 NLDGSLRKVLFWQEL------------DQPRAIALDPSSGF-MYWTDW----------GEVPKIERAGM---DGSSRFII 160 (318)
T ss_dssp ETTSCSCEEEECSSC------------SSEEEEEEEGGGTE-EEEEEC----------SSSCEEEEEET---TSCSCEEE
T ss_pred ECCCCcEEEEEeCCC------------CCccEEEEeCCCCE-EEEEec----------CCCCEEEEEEc---CCCCeEEE
Confidence 998876555432111 23457888887664 455332 12457999986 66655555
Q ss_pred eec-ccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002194 452 HKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 452 ~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 499 (954)
... -....+++|+++++.|+++.... .+|++++.++. ..+.+.
T Consensus 161 ~~~~l~~Pnglavd~~~~~lY~aD~~~---~~I~~~d~dG~--~~~~~~ 204 (318)
T 3sov_A 161 INSEIYWPNGLTLDYEEQKLYWADAKL---NFIHKSNLDGT--NRQAVV 204 (318)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTT---TEEEEEETTSC--SCEEEE
T ss_pred EECCCCCccEEEEeccCCEEEEEECCC---CEEEEEcCCCC--ceEEEe
Confidence 332 23456799999999999885433 57999999874 334443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0057 Score=71.76 Aligned_cols=124 Identities=4% Similarity=-0.138 Sum_probs=74.4
Q ss_pred cCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcE
Q 002194 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTY 537 (954)
Q Consensus 458 ~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 537 (954)
...++|.+.+..|+++.... .+|+++++++. ....+.........+ +++.+.+..|++...
T Consensus 351 ~~~ld~d~~~~~ly~sD~~~---~~I~r~~~~g~--~~~~v~~~~~~~p~G------lAvD~~~~~lY~tD~-------- 411 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDDEV---RAIRRSFIDGS--GSQFVVTAQIAHPDG------IAVDWVARNLYWTDT-------- 411 (619)
T ss_dssp EEEEEEETTTTEEEEEETTT---TEEEEEETTSC--SCEEEECSSCSCCCE------EEEETTTTEEEEEET--------
T ss_pred cEEEEEEcCCCeEEEEeCCC---CeEEEEEcCCC--ccEEEEECCCCCcCc------eEEecccCcEEEEeC--------
Confidence 34577888778888875432 46999998874 233333322222222 566666666666641
Q ss_pred EEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECC
Q 002194 538 ILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWP 617 (954)
Q Consensus 538 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~ 617 (954)
....|.+.++++...+.|....- ..+. ..++.|..+.|+++-.+. ...|++.+++
T Consensus 412 ------------~~~~I~v~~~~G~~~~~l~~~~l----~~P~-------~iavdp~~G~ly~tD~g~--~~~I~r~~~d 466 (619)
T 3s94_A 412 ------------GTDRIEVTRLNGTMRKILISEDL----EEPR-------AIVLDPMVGYMYWTDWGE--IPKIERAALD 466 (619)
T ss_dssp ------------TTTEEEEEETTSCSCEEEECTTC----CSEE-------EEEEETTTTEEEEEECSS--SCEEEEEETT
T ss_pred ------------CCCcEEEEeCCCCeEEEEEECCC----CCee-------eEEEEcCCCcEEEecCCC--CCEEEEEccC
Confidence 12358888888776665553321 1122 245777777888876643 5679999877
Q ss_pred CCceeEee
Q 002194 618 DKKSCQIT 625 (954)
Q Consensus 618 ~g~~~~Lt 625 (954)
+...+.+.
T Consensus 467 G~~~~~l~ 474 (619)
T 3s94_A 467 GSDRVVLV 474 (619)
T ss_dssp SCSCEEEE
T ss_pred CCccEEEE
Confidence 66555554
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.14 E-value=3.9e-06 Score=93.94 Aligned_cols=107 Identities=11% Similarity=-0.060 Sum_probs=71.6
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~a 746 (954)
.|+||++||.... ....|.......+++ .+|.|++ .|..|+|.+... ........+|+.+.
T Consensus 70 ~p~vvliHG~~~s-------------~~~~w~~~l~~~ll~~~~~~VI~---vD~~g~g~s~y~~~~~~~~~~a~~l~~l 133 (450)
T 1rp1_A 70 KKTRFIIHGFIDK-------------GEENWLLDMCKNMFKVEEVNCIC---VDWKKGSQTSYTQAANNVRVVGAQVAQM 133 (450)
T ss_dssp SEEEEEECCCCCT-------------TCTTHHHHHHHHHTTTCCEEEEE---EECHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEccCCCC-------------CCcchHHHHHHHHHhcCCeEEEE---EeCccccCCcchHHHHHHHHHHHHHHHH
Confidence 5899999995311 000111112334444 4899999 445555544221 11233456777888
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
+++|.++..++.+++.|+||||||.+|+.++.+.|+ ++.++.+.|.
T Consensus 134 l~~L~~~~g~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa 179 (450)
T 1rp1_A 134 LSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPV 179 (450)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCC
T ss_pred HHHHHHhcCCChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCcc
Confidence 888865433567899999999999999999999998 9999988775
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0003 Score=75.36 Aligned_cols=224 Identities=8% Similarity=-0.008 Sum_probs=132.2
Q ss_pred cceEEEEEeCCc---eeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCc
Q 002194 313 TTQLVLVSLDGT---VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLA 387 (954)
Q Consensus 313 ~~~l~~~~~~G~---~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~ 387 (954)
...|.++++++. ...+... .....++|.+++..|+++... ...|+.++.+++.. ..+....
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~------------~~~I~r~~~~g~~~~~~~~~~~-- 77 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVS------------EEAIKRTEFNKTESVQNVVVSG-- 77 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETT------------TTEEEEEETTSSSCCCEEEEEC--
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECC------------CCcEEEEEccCCCceEEEEcCC--
Confidence 356888998442 2223222 445678899888888777532 23788888886532 1111100
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe-ecccccCceeeccC
Q 002194 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDD 466 (954)
Q Consensus 388 ~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~spD 466 (954)
...+..+++.+.+..| ||++. ..+.|.++++ +|...+.+. .......++++.|+
T Consensus 78 ----------l~~p~glavd~~~g~l-y~~d~-----------~~~~I~~~~~---dG~~~~~l~~~~~~~P~giavdp~ 132 (318)
T 3sov_A 78 ----------LLSPDGLACDWLGEKL-YWTDS-----------ETNRIEVSNL---DGSLRKVLFWQELDQPRAIALDPS 132 (318)
T ss_dssp ----------CSCCCEEEEETTTTEE-EEEET-----------TTTEEEEEET---TSCSCEEEECSSCSSEEEEEEEGG
T ss_pred ----------CCCccEEEEEcCCCeE-EEEEC-----------CCCEEEEEEC---CCCcEEEEEeCCCCCccEEEEeCC
Confidence 0223467787766544 55332 2457888885 666555554 33334567899998
Q ss_pred CceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCC
Q 002194 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGAT 546 (954)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (954)
+..|+++.+... .+|+++++++. ..+.+.........+ +++++++..|+|...
T Consensus 133 ~g~ly~td~~~~--~~I~r~~~dG~--~~~~~~~~~l~~Png------lavd~~~~~lY~aD~----------------- 185 (318)
T 3sov_A 133 SGFMYWTDWGEV--PKIERAGMDGS--SRFIIINSEIYWPNG------LTLDYEEQKLYWADA----------------- 185 (318)
T ss_dssp GTEEEEEECSSS--CEEEEEETTSC--SCEEEECSSCSCEEE------EEEETTTTEEEEEET-----------------
T ss_pred CCEEEEEecCCC--CEEEEEEcCCC--CeEEEEECCCCCccE------EEEeccCCEEEEEEC-----------------
Confidence 888888765432 67999999874 334443322222122 789999988888762
Q ss_pred CCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCce
Q 002194 547 PEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (954)
Q Consensus 547 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~ 621 (954)
....|+++|++++..+.+...... .. ..+..+++.++++.. ....|++++..+|+.
T Consensus 186 ---~~~~I~~~d~dG~~~~~~~~~~~~----~P---------~glav~~~~lywtd~---~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 186 ---KLNFIHKSNLDGTNRQAVVKGSLP----HP---------FALTLFEDILYWTDW---STHSILACNKYTGEG 241 (318)
T ss_dssp ---TTTEEEEEETTSCSCEEEECSCCS----CE---------EEEEEETTEEEEEET---TTTEEEEEETTTCCS
T ss_pred ---CCCEEEEEcCCCCceEEEecCCCC----Cc---------eEEEEeCCEEEEEec---CCCeEEEEECCCCCc
Confidence 234699999987766665532211 11 123334566666533 345688888755553
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0011 Score=69.84 Aligned_cols=193 Identities=13% Similarity=0.067 Sum_probs=106.5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
....+.+++||+ |+++. .+...|++++.+ ++.+.+...... ..+..+++.++|++.+.. .
T Consensus 63 ~~~~i~~~~~g~-l~v~~--------~~~~~v~~~d~~-g~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~-~------ 122 (300)
T 2qc5_A 63 KVMCLIVSSLGD-IWFTE--------NGANKIGKLSKK-GGFTEYPLPQPD---SGPYGITEGLNGDIWFTQ-L------ 122 (300)
T ss_dssp CEEEEEECTTSC-EEEEE--------TTTTEEEEECTT-SCEEEEECSSTT---CCEEEEEECSTTCEEEEE-T------
T ss_pred cceeEEECCCCC-EEEEe--------cCCCeEEEECCC-CCeEEecCCCCC---CCCccceECCCCCEEEEc-c------
Confidence 466678899996 44432 124579999988 555443221111 114577788888754432 0
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEc--CCC-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEI--GPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l--~~~-~~~~~~~~SpDGk~l 346 (954)
....|++++.+|+...+ ... .....+++++||+ |
T Consensus 123 ------------------------------------------~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~-l 159 (300)
T 2qc5_A 123 ------------------------------------------NGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA-L 159 (300)
T ss_dssp ------------------------------------------TTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSS-E
T ss_pred ------------------------------------------CCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCC-E
Confidence 12346777766554433 212 4556788999998 4
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
++.... ...++.++.++. ...+.. +.. ...+..+.+.+||+ + |+.+
T Consensus 160 ~v~~~~------------~~~i~~~~~~g~-~~~~~~-~~~----------~~~~~~i~~d~~g~-l-~v~~-------- 205 (300)
T 2qc5_A 160 WFTENQ------------NNSIGRITNTGK-LEEYPL-PTN----------AAAPVGITSGNDGA-L-WFVE-------- 205 (300)
T ss_dssp EEEETT------------TTEEEEECTTCC-EEEEEC-SST----------TCCEEEEEECTTSS-E-EEEE--------
T ss_pred EEEecC------------CCeEEEECCCCc-EEEeeC-CCC----------CCCcceEEECCCCC-E-EEEc--------
Confidence 444321 126888888543 333321 100 02345688888885 3 3321
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEe--ecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
...+.|++++. + ++...+. .....+..++++++|+ |+++.... ..|++++.++
T Consensus 206 ---~~~~~i~~~~~---~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~---~~i~~~~~~g 260 (300)
T 2qc5_A 206 ---IMGNKIGRITT---T-GEISEYDIPTPNARPHAITAGKNSE-IWFTEWGA---NQIGRITNDN 260 (300)
T ss_dssp ---TTTTEEEEECT---T-CCEEEEECSSTTCCEEEEEECSTTC-EEEEETTT---TEEEEECTTS
T ss_pred ---cCCCEEEEEcC---C-CcEEEEECCCCCCCceEEEECCCCC-EEEeccCC---CeEEEECCCC
Confidence 12346888873 3 3333332 1223455688999987 55543322 4688998843
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00043 Score=83.27 Aligned_cols=180 Identities=14% Similarity=-0.006 Sum_probs=115.8
Q ss_pred ceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhh
Q 002194 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (954)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (954)
...|..+++++++...+...... ...++|.+.+..||++-.
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~~~~~-----~~gl~~d~~~~~lY~sD~---------------------------------- 443 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSDL---------------------------------- 443 (791)
T ss_dssp BSSEEEECTTSCCCEEEECSCSS-----EEEEEEETTTTEEEEEET----------------------------------
T ss_pred ccceeEeeccCCcceeeecCCCc-----eEEEeecccCCeeEEeec----------------------------------
Confidence 45688888887766655443222 457888887777877610
Q ss_pred hccCccccccccccccceEEEEEeCC-----ceeEcCC-C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEE
Q 002194 298 LLKDEYDEDLFDYYATTQLVLVSLDG-----TVKEIGP-P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (954)
Q Consensus 298 ~l~~~~d~~~~~~~~~~~l~~~~~~G-----~~~~l~~-~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l 370 (954)
....|++++++| ....+.. . ....++++.+.|+.|+++... ...|++
T Consensus 444 --------------~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~------------~~~I~v 497 (791)
T 3m0c_C 444 --------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSV 497 (791)
T ss_dssp --------------TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEE
T ss_pred --------------cceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecC------------CCeEEE
Confidence 223577888743 2233332 3 556678888889888887633 238999
Q ss_pred EeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceE
Q 002194 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (954)
Q Consensus 371 ~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (954)
.+++|+..+.+..... ..++.+++.|.+.. +||++.. ....|+++++ +|...+.
T Consensus 498 ~~ldG~~~~~l~~~~l------------~~P~gIaVDp~~g~-LYwtD~g----------~~~~I~~~~~---dG~~~~~ 551 (791)
T 3m0c_C 498 ADTKGVKRKTLFRENG------------SKPRAIVVDPVHGF-MYWTDWG----------TPAKIKKGGL---NGVDIYS 551 (791)
T ss_dssp EETTSSSEEEEEECTT------------CCEEEEEEETTTTE-EEEEECS----------SSCEEEEEET---TSCCEEE
T ss_pred EeCCCCeEEEEEeCCC------------CCcceEEEecCCCC-EEEecCC----------CCCeEEEEec---CCCceEE
Confidence 9999887666644211 23467889887664 5664321 1257889886 7766666
Q ss_pred Eeecc-cccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 451 LHKLD-LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 451 l~~~~-~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+.... ....++++.++++.|+++.... .+|+++++++.
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~~~---~~I~~~d~dG~ 590 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDSKL---HSISSIDVNGG 590 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTT---TEEEEEETTSC
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeCCC---CcEEEEecCCC
Confidence 64433 3456789999999888874332 57999999885
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.07 E-value=7.7e-05 Score=89.20 Aligned_cols=229 Identities=10% Similarity=0.053 Sum_probs=134.1
Q ss_pred ccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC----ceEEEeccCC
Q 002194 312 ATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG----IFVRELCDLP 385 (954)
Q Consensus 312 ~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g----~~~~~l~~~~ 385 (954)
....|+++++ +++...+... .....++|++++..|+++... ...|+.+++++ .....+...
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~------------~~~I~~~~~~g~~~~~~~~~~i~~- 450 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------------QRMICSTQLDRAHGVSSYDTVISR- 450 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTT------------TTSBEEEESCCCCC-CCCCCBCCS-
T ss_pred CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecC------------CCeEEEEecCCCCCCcceEEEEeC-
Confidence 3456888888 5555555444 667788999988888776532 23788888876 221111110
Q ss_pred CcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-ccccCceeec
Q 002194 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWC 464 (954)
Q Consensus 386 ~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~s 464 (954)
....+..+++.+.+..| ||++ ...+.|+++++ ++...+.+... ......+++.
T Consensus 451 -----------~~~~P~glavD~~~g~L-Y~tD-----------~~~~~I~v~d~---dg~~~~~l~~~~~~~P~giavD 504 (699)
T 1n7d_A 451 -----------DIQAPDGLAVDWIHSNI-YWTD-----------SVLGTVSVADT---KGVKRKTLFREQGSKPRAIVVD 504 (699)
T ss_dssp -----------CC--CCCEECCCSSSBC-EECC-----------TTTSCEEEEBS---SSCCEEEECCCSSCCCCCEECC
T ss_pred -----------CCCCcceEEEEeeCCcE-EEEe-----------ccCCeEEEEec---CCCceEEEEeCCCCCcceEEEc
Confidence 00123457777666655 4422 12457888885 66655555432 3456789999
Q ss_pred cCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCC
Q 002194 465 DDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNG 544 (954)
Q Consensus 465 pDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~ 544 (954)
|++..|+++.+.. ..+|+++++++. ..+.+.........+ ++++|++++|+|...
T Consensus 505 p~~g~ly~td~~~--~~~I~~~~~dG~--~~~~l~~~~l~~PnG------lavd~~~~~LY~aD~--------------- 559 (699)
T 1n7d_A 505 PVHGFMYWTDWGT--PAKIKKGGLNGV--DIYSLVTENIQWPNG------ITLDLLSGRLYWVDS--------------- 559 (699)
T ss_dssp SSSSCCEECCCSS--SCCEEBCCSSSC--CCCEESCSSCSSCCC------EEECTTTCCEEEEET---------------
T ss_pred cCCCcEEEcccCC--CCeEEEEeCCCC--CeeEEEeCCCCCccE------EEEeccCCEEEEEec---------------
Confidence 9988888875433 257999998874 223332222221122 889999988888762
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeE
Q 002194 545 ATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (954)
Q Consensus 545 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~ 623 (954)
....|+++++++...+.+...... ......+..|++.++++.+ ....|++++..+|+..+
T Consensus 560 -----~~~~I~~~d~dG~~~~~~~~~~~~-----------~~~P~glavd~~~lywtd~---~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 560 -----KLHSISSIDVNGGNRKTILEDEKR-----------LAHPFSLAVFEDKVFWTDI---INEAIFSANRLTGSDVN 619 (699)
T ss_dssp -----TTTEEEEECSSSSCCEEECCCSSS-----------CSSCCCCEEETTEEEEECS---TTTCEEEEETTTEEEEE
T ss_pred -----CCCeEEEEccCCCceEEEEecCCc-----------CCCceEeEEECCEEEEEeC---CCCeEEEEEccCCCceE
Confidence 124599999987665555432211 0011234556676666543 34568888876665433
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0011 Score=79.81 Aligned_cols=225 Identities=11% Similarity=0.067 Sum_probs=133.1
Q ss_pred cceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc----eEEEeccCCC
Q 002194 313 TTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI----FVRELCDLPL 386 (954)
Q Consensus 313 ~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~----~~~~l~~~~~ 386 (954)
...|..+++ .+....+... .....++|++.+..|+++.... ..|+.+++++. ....+....
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~------------~~I~~~~l~g~~~~~~~~~vi~~~- 469 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQ------------RMICSTQLDRAHGVSSYDTVISRD- 469 (791)
T ss_dssp BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTT------------TEEEEEEC--------CEEEECSS-
T ss_pred ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccc------------eeEEEEeccCCCCCcceeEEEecC-
Confidence 345777777 4444555444 5667788888777887776332 36888888763 222222211
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-ccccCceeecc
Q 002194 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCD 465 (954)
Q Consensus 387 ~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~sp 465 (954)
...+..+++.+.++.| ||++. ..+.|+++++ +|...+.|... .....++++.|
T Consensus 470 -----------l~~P~GLAvD~~~~~L-Y~tD~-----------~~~~I~v~~l---dG~~~~~l~~~~l~~P~gIaVDp 523 (791)
T 3m0c_C 470 -----------IQAPDGLAVDWIHSNI-YWTDS-----------VLGTVSVADT---KGVKRKTLFRENGSKPRAIVVDP 523 (791)
T ss_dssp -----------CSCCCEEEEETTTTEE-EEEET-----------TTTEEEEEET---TSSSEEEEEECTTCCEEEEEEET
T ss_pred -----------CCCcceeeeeecCCcE-EEEec-----------CCCeEEEEeC---CCCeEEEEEeCCCCCcceEEEec
Confidence 1234567888777654 55332 2458999986 67666666443 33467899999
Q ss_pred CCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCC
Q 002194 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGA 545 (954)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~ 545 (954)
.+..|+++.+... .+|+++++++. ..+.+.........+ +++.+++..|+|...
T Consensus 524 ~~g~LYwtD~g~~--~~I~~~~~dG~--~~~~lv~~~l~~P~G------LavD~~~~~LYwaD~---------------- 577 (791)
T 3m0c_C 524 VHGFMYWTDWGTP--AKIKKGGLNGV--DIYSLVTENIQWPNG------ITLDLLSGRLYWVDS---------------- 577 (791)
T ss_dssp TTTEEEEEECSSS--CEEEEEETTSC--CEEEEECSSCSCEEE------EEEETTTTEEEEEET----------------
T ss_pred CCCCEEEecCCCC--CeEEEEecCCC--ceEEEEeCCCCCceE------EEEecCCCeEEEEeC----------------
Confidence 9889998865442 57999999884 334444332222222 677777777777751
Q ss_pred CCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCc
Q 002194 546 TPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (954)
Q Consensus 546 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~ 620 (954)
....|+++++++...+.+...... . .....++.++++|+++-+ ....|++++..+|+
T Consensus 578 ----~~~~I~~~d~dG~~~~~v~~~~~~--l---------~~P~glav~~~~lYwtD~---~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 578 ----KLHSISSIDVNGGNRKTILEDEKR--L---------AHPFSLAVFEDKVFWTDI---INEAIFSANRLTGS 634 (791)
T ss_dssp ----TTTEEEEEETTSCSCEEEEECTTT--T---------SSEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred ----CCCcEEEEecCCCceEEEecCCCc--c---------CCCCEEEEeCCEEEEEEC---CCCEEEEEeCCCCc
Confidence 124699999988877776654321 0 011234445666665443 23567777755553
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.5e-05 Score=73.20 Aligned_cols=64 Identities=17% Similarity=0.085 Sum_probs=46.1
Q ss_pred HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 002194 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (954)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 782 (954)
+++|.|+. .+..|+|.+...........+|+.+.++.+ +.+++.++|||+||.+++.++.++|.
T Consensus 40 ~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~ 103 (131)
T 2dst_A 40 PEGYAFYL---LDLPGYGRTEGPRMAPEELAHFVAGFAVMM------NLGAPWVLLRGLGLALGPHLEALGLR 103 (131)
T ss_dssp CTTSEEEE---ECCTTSTTCCCCCCCHHHHHHHHHHHHHHT------TCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred hCCcEEEE---ECCCCCCCCCCCCCCHHHHHHHHHHHHHHc------CCCccEEEEEChHHHHHHHHHhcCCc
Confidence 34599999 566777777554332445555555555543 34589999999999999999999875
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00012 Score=87.62 Aligned_cols=180 Identities=14% Similarity=-0.025 Sum_probs=110.1
Q ss_pred ceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhh
Q 002194 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (954)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (954)
...|+++++++++...+...... ...++|.+++..||++-.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~-----p~gla~d~~~~~Ly~sD~---------------------------------- 425 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSDL---------------------------------- 425 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTT-----CCCCEEETTTTEEEECCT----------------------------------
T ss_pred ccceEEEeCCCCcceeeeccCcc-----eEEEccccccCeEEEEec----------------------------------
Confidence 34788889888776655433222 457899998888887600
Q ss_pred hccCccccccccccccceEEEEEeCC-----ceeEcC-CC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEE
Q 002194 298 LLKDEYDEDLFDYYATTQLVLVSLDG-----TVKEIG-PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (954)
Q Consensus 298 ~l~~~~d~~~~~~~~~~~l~~~~~~G-----~~~~l~-~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l 370 (954)
....|++++++| ....+. .. .....+++.+.++.|+++... ...|++
T Consensus 426 --------------~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~------------~~~I~v 479 (699)
T 1n7d_A 426 --------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSV 479 (699)
T ss_dssp --------------TTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTT------------TSCEEE
T ss_pred --------------CCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEecc------------CCeEEE
Confidence 123477777743 222222 22 344567777777777665422 237889
Q ss_pred EeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceE
Q 002194 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (954)
Q Consensus 371 ~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (954)
++++|+..+.+..... ..++.+++.|++..| ||++. .....|+++++ +|...+.
T Consensus 480 ~d~dg~~~~~l~~~~~------------~~P~giavDp~~g~l-y~td~----------~~~~~I~~~~~---dG~~~~~ 533 (699)
T 1n7d_A 480 ADTKGVKRKTLFREQG------------SKPRAIVVDPVHGFM-YWTDW----------GTPAKIKKGGL---NGVDIYS 533 (699)
T ss_dssp EBSSSCCEEEECCCSS------------CCCCCEECCSSSSCC-EECCC----------SSSCCEEBCCS---SSCCCCE
T ss_pred EecCCCceEEEEeCCC------------CCcceEEEccCCCcE-EEccc----------CCCCeEEEEeC---CCCCeeE
Confidence 9998876665543211 234578899987755 44221 11257888875 5555555
Q ss_pred Eee-cccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 451 LHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 451 l~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+.. .-....+++|+|+++.|+++.... .+|+++++++.
T Consensus 534 l~~~~l~~PnGlavd~~~~~LY~aD~~~---~~I~~~d~dG~ 572 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLLSGRLYWVDSKL---HSISSIDVNGG 572 (699)
T ss_dssp ESCSSCSSCCCEEECTTTCCEEEEETTT---TEEEEECSSSS
T ss_pred EEeCCCCCccEEEEeccCCEEEEEecCC---CeEEEEccCCC
Confidence 532 233457899999999998875432 57999999874
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00024 Score=73.15 Aligned_cols=198 Identities=10% Similarity=0.014 Sum_probs=115.1
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
.....|+||| +|+.+.. ..+...|.++|+++|+..+-...+... .....+.+|+.|+.+.-
T Consensus 23 ~~Gl~~~~dg-~Lyvstg------~~~~s~v~~iD~~tg~v~~~i~l~~~~-----fgeGi~~~g~~lyv~t~------- 83 (266)
T 2iwa_A 23 TQGLVYAEND-TLFESTG------LYGRSSVRQVALQTGKVENIHKMDDSY-----FGEGLTLLNEKLYQVVW------- 83 (266)
T ss_dssp EEEEEECSTT-EEEEEEC------STTTCEEEEEETTTCCEEEEEECCTTC-----CEEEEEEETTEEEEEET-------
T ss_pred cccEEEeCCC-eEEEECC------CCCCCEEEEEECCCCCEEEEEecCCCc-----ceEEEEEeCCEEEEEEe-------
Confidence 4568899996 5555431 235689999999999876654433321 12234455777876610
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCCccccccccCCCCcEEEE
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILI 348 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~~~~~~~~~SpDGk~l~~ 348 (954)
....++++|. +++ ...+..+ ......+++||++++.
T Consensus 84 -----------------------------------------~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~v 121 (266)
T 2iwa_A 84 -----------------------------------------LKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYG 121 (266)
T ss_dssp -----------------------------------------TCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEE
T ss_pred -----------------------------------------cCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEE
Confidence 2345888998 664 3444322 1234568889999876
Q ss_pred EeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
+. . ...++++|.++.+ .+.+..... ..|. .....+.|. ||+ +|...
T Consensus 122 s~-g------------s~~l~viD~~t~~v~~~I~Vg~~--~~p~------~~~nele~~-dg~--lyvn~--------- 168 (266)
T 2iwa_A 122 SD-G------------TSILYEIDPHTFKLIKKHNVKYN--GHRV------IRLNELEYI-NGE--VWANI--------- 168 (266)
T ss_dssp EC-S------------SSEEEEECTTTCCEEEEEECEET--TEEC------CCEEEEEEE-TTE--EEEEE---------
T ss_pred EC-C------------CCeEEEEECCCCcEEEEEEECCC--Cccc------ccceeEEEE-CCE--EEEec---------
Confidence 53 2 1288999988744 344443211 0111 112356677 663 44421
Q ss_pred cccCCCeEEEEecCCCCCCCc-eEEeecc-------------cccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 428 EVTPRDIIYTQQAEPVQGEGP-EILHKLD-------------LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~-~~l~~~~-------------~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
...+.|.++|. .+++. ..+.-.. ....+++|+||+++++.+... ..+|+.+++..
T Consensus 169 --~~~~~V~vID~---~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~---~~~v~~i~l~~ 237 (266)
T 2iwa_A 169 --WQTDCIARISA---KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL---WPKLFEIKLHL 237 (266)
T ss_dssp --TTSSEEEEEET---TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT---CSEEEEEEEEE
T ss_pred --CCCCeEEEEEC---CCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC---CCeEEEEEEec
Confidence 22458999995 44444 4443211 123679999999987776432 25688887654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00081 Score=71.72 Aligned_cols=243 Identities=14% Similarity=0.093 Sum_probs=123.1
Q ss_pred eeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEE
Q 002194 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (954)
Q Consensus 179 ~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l 258 (954)
.+.+..++.+.....++|+|||+ |+++.. ....|++++.+++... ....+.. ...+++++||+ |
T Consensus 22 ~~~~~~~p~~~~pegia~~~~g~-lyv~d~--------~~~~I~~~d~~g~~~~-~~~~~~~-----p~gia~~~dG~-l 85 (306)
T 2p4o_A 22 AKIITSFPVNTFLENLASAPDGT-IFVTNH--------EVGEIVSITPDGNQQI-HATVEGK-----VSGLAFTSNGD-L 85 (306)
T ss_dssp EEEEEEECTTCCEEEEEECTTSC-EEEEET--------TTTEEEEECTTCCEEE-EEECSSE-----EEEEEECTTSC-E
T ss_pred ceEeEeCCCCCCcceEEECCCCC-EEEEeC--------CCCeEEEECCCCceEE-EEeCCCC-----ceeEEEcCCCc-E
Confidence 33444454444566789999997 655431 2567999998875433 3222221 45788999998 4
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC---ccc
Q 002194 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP---AVY 334 (954)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~---~~~ 334 (954)
+++... . ...+|+.++. +|+.+.+... ...
T Consensus 86 ~vad~~--------------------~--------------------------~~~~v~~~d~~~g~~~~~~~~~~~~~~ 119 (306)
T 2p4o_A 86 VATGWN--------------------A--------------------------DSIPVVSLVKSDGTVETLLTLPDAIFL 119 (306)
T ss_dssp EEEEEC--------------------T--------------------------TSCEEEEEECTTSCEEEEEECTTCSCE
T ss_pred EEEecc--------------------C--------------------------CcceEEEEcCCCCeEEEEEeCCCcccc
Confidence 444100 0 1124777776 7766554321 112
Q ss_pred cccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCC-CcccCCccccccccCccceeeccCCCCc
Q 002194 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP-LAEDIPIAFNSVRKGMRSINWRSDKPST 413 (954)
Q Consensus 335 ~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~-~~~~~p~~~~~~~~g~~~~~wspDg~~i 413 (954)
..++..+++ .+++.. .. .+.||.+|.+++..+.....+ .....+. ........+ +|||+.+
T Consensus 120 ~g~~~~~~~-~~~v~d-~~-----------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~---~~~~~pngi--s~dg~~l 181 (306)
T 2p4o_A 120 NGITPLSDT-QYLTAD-SY-----------RGAIWLIDVVQPSGSIWLEHPMLARSNSE---SVFPAANGL--KRFGNFL 181 (306)
T ss_dssp EEEEESSSS-EEEEEE-TT-----------TTEEEEEETTTTEEEEEEECGGGSCSSTT---CCSCSEEEE--EEETTEE
T ss_pred CcccccCCC-cEEEEE-CC-----------CCeEEEEeCCCCcEeEEEECCcccccccc---CCCCcCCCc--CcCCCEE
Confidence 233334444 333332 11 237888888754322210000 0000000 000122334 8998765
Q ss_pred eEEEEeccCCCccccccCCCeEEEEecCCCCCC--CceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE--GPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~--~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
++. + ...+.|++++++. ++. ..+.+.. ......+++++||+ | |.++..+ .+|++++.++
T Consensus 182 yv~-d-----------~~~~~I~~~~~~~-~g~~~~~~~~~~-~~~P~gi~vd~dG~-l-~va~~~~--~~V~~~~~~G- 242 (306)
T 2p4o_A 182 YVS-N-----------TEKMLLLRIPVDS-TDKPGEPEIFVE-QTNIDDFAFDVEGN-L-YGATHIY--NSVVRIAPDR- 242 (306)
T ss_dssp EEE-E-----------TTTTEEEEEEBCT-TSCBCCCEEEEE-SCCCSSEEEBTTCC-E-EEECBTT--CCEEEECTTC-
T ss_pred EEE-e-----------CCCCEEEEEEeCC-CCCCCccEEEec-cCCCCCeEECCCCC-E-EEEeCCC--CeEEEECCCC-
Confidence 554 2 2245899998621 111 1222222 23467799999996 4 4433332 4688898864
Q ss_pred CCCcEEEec--CCCCCccCCCCCCCeeec---cCCcEEEEEE
Q 002194 492 DVAPRILFD--RSSEDVYSDPGSPMMRRT---STGTYVIAKI 528 (954)
Q Consensus 492 ~~~~~~l~~--~~~~~~~~~~~~~~~~~s---pdG~~l~~~~ 528 (954)
+...+.. .......+ ++|. ||+++|+...
T Consensus 243 --~~~~~~~~~~~~~~p~~------~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 243 --STTIIAQAEQGVIGSTA------VAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp --CEEEEECGGGTCTTEEE------EEECCSTTTTTEEEEEE
T ss_pred --CEEEEeecccccCCceE------EEEecccCCCCEEEEEC
Confidence 2222211 11111111 6677 7888877765
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00029 Score=72.50 Aligned_cols=175 Identities=9% Similarity=-0.022 Sum_probs=99.4
Q ss_pred cceEEEEEe-CCceeE-cCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCccc
Q 002194 313 TTQLVLVSL-DGTVKE-IGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAED 389 (954)
Q Consensus 313 ~~~l~~~~~-~G~~~~-l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~ 389 (954)
.+.|..+|+ +|+... +.-+.......++++|+.|+..... .+.++++|.++.+. ..+...
T Consensus 43 ~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~------------~~~v~viD~~t~~v~~~i~~g----- 105 (266)
T 2iwa_A 43 RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL------------KNIGFIYDRRTLSNIKNFTHQ----- 105 (266)
T ss_dssp TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT------------CSEEEEEETTTTEEEEEEECC-----
T ss_pred CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec------------CCEEEEEECCCCcEEEEEECC-----
Confidence 456999999 886443 3222222222344567777666532 24899999986543 444321
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecc--c---ccCceeec
Q 002194 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--L---RYGGISWC 464 (954)
Q Consensus 390 ~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~--~---~~~~~~~s 464 (954)
. ...+..++||++++.. ...+.|+++|. .+....+.+.-.. . ....+.|.
T Consensus 106 ~----------~~g~glt~Dg~~l~vs-------------~gs~~l~viD~--~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 106 M----------KDGWGLATDGKILYGS-------------DGTSILYEIDP--HTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp S----------SSCCEEEECSSSEEEE-------------CSSSEEEEECT--TTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred C----------CCeEEEEECCCEEEEE-------------CCCCeEEEEEC--CCCcEEEEEEECCCCcccccceeEEEE
Confidence 0 1234578899887654 23558999984 3333344443221 1 23456777
Q ss_pred cCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCC-------------CCccCCCCCCCeeeccCCcEEEEEEeec
Q 002194 465 DDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS-------------EDVYSDPGSPMMRRTSTGTYVIAKIKKE 531 (954)
Q Consensus 465 pDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-------------~~~~~~~~~~~~~~spdG~~l~~~~~~~ 531 (954)
|| .|+...+.. ..|.++|+.++. .....+... ....+ ++++|+|+.++....
T Consensus 161 -dg-~lyvn~~~~---~~V~vID~~tg~--V~~~I~~~g~~~~~~~~~~~~~~v~nG------Ia~~~~~~~lfVTgk-- 225 (266)
T 2iwa_A 161 -NG-EVWANIWQT---DCIARISAKDGT--LLGWILLPNLRKKLIDEGFRDIDVLNG------IAWDQENKRIFVTGK-- 225 (266)
T ss_dssp -TT-EEEEEETTS---SEEEEEETTTCC--EEEEEECHHHHHHHHHTTCTTCCCEEE------EEEETTTTEEEEEET--
T ss_pred -CC-EEEEecCCC---CeEEEEECCCCc--EEEEEECCCcccccccccccccCceEE------EEEcCCCCEEEEECC--
Confidence 66 455444333 479999999873 222222110 01122 789999988776652
Q ss_pred cCCCcEEEEecCCCCCCCCCCeEEEEECCCC
Q 002194 532 NDEGTYILLNGNGATPEGNIPFLDLFDINTG 562 (954)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 562 (954)
..+.|+.+++.+.
T Consensus 226 ------------------~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 226 ------------------LWPKLFEIKLHLV 238 (266)
T ss_dssp ------------------TCSEEEEEEEEEC
T ss_pred ------------------CCCeEEEEEEecc
Confidence 3567888888654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0012 Score=71.81 Aligned_cols=178 Identities=13% Similarity=0.042 Sum_probs=90.8
Q ss_pred ceEEEEEe-CCc-eeEcCCC-------ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccC
Q 002194 314 TQLVLVSL-DGT-VKEIGPP-------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDL 384 (954)
Q Consensus 314 ~~l~~~~~-~G~-~~~l~~~-------~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~ 384 (954)
..|+++|+ +|+ .+.+..+ ....+++++|++..++++..... ....|++||+++++..++...
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~---------~~~~i~v~d~~~g~~~r~~~~ 163 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD---------DKAALIRVDLQTGLAARVLQG 163 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG---------GGCEEEEEETTTCCEEEECTT
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC---------CCCeEEEEECCCCCEEEEecC
Confidence 46889998 776 3333221 23467788987776655542100 023788999986554443321
Q ss_pred -CCccc--CCccccc--------------cccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCC
Q 002194 385 -PLAED--IPIAFNS--------------VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG 447 (954)
Q Consensus 385 -~~~~~--~p~~~~~--------------~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 447 (954)
+.... ..+..++ ...+...++|||||+.+++. + .....+|.++.+....+.
T Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~-~-----------~~~~~l~~~~~~~~~~~~ 231 (343)
T 2qe8_A 164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLS-P-----------MHSTSMYRIKSADLSNLQ 231 (343)
T ss_dssp CTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEE-E-----------SSCSEEEEEEHHHHTCTT
T ss_pred CCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEE-e-----------CCCCeEEEEEHHHhcCCC
Confidence 11000 0000111 11245679999999876655 1 113378888731111111
Q ss_pred c--------eEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCC-CCCccCCCCCCCeeec
Q 002194 448 P--------EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS-SEDVYSDPGSPMMRRT 518 (954)
Q Consensus 448 ~--------~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~s 518 (954)
. ...........++++++||. |+++.... .+|++++..++ +...+...+ .....+ ++++
T Consensus 232 ~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~~~---~~V~~~d~~~G--~~~~~~~~~~~~~p~~------va~~ 299 (343)
T 2qe8_A 232 LTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLAH---SAIGVITSADR--AYKLLVTDEKLSWTDS------FNFG 299 (343)
T ss_dssp CCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEGGG---TEEEEEETTTT--EEEEEEECGGGSCEEE------EEEC
T ss_pred CChhhhhcceEecccCCCCceEEECCCCC-EEEEccCC---CeEEEEECCCC--CEEEEEECCceecCCe------eEEC
Confidence 0 01112233456799999985 44443332 46889998433 233333221 111112 6788
Q ss_pred cCCcEE
Q 002194 519 STGTYV 524 (954)
Q Consensus 519 pdG~~l 524 (954)
+||+.+
T Consensus 300 ~~g~l~ 305 (343)
T 2qe8_A 300 SDGYLY 305 (343)
T ss_dssp TTSCEE
T ss_pred CCCcEE
Confidence 887643
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00097 Score=72.40 Aligned_cols=143 Identities=10% Similarity=0.064 Sum_probs=75.9
Q ss_pred eEEEEEeCCceeEcCC-------C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCC
Q 002194 315 QLVLVSLDGTVKEIGP-------P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLP 385 (954)
Q Consensus 315 ~l~~~~~~G~~~~l~~-------~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~ 385 (954)
.|+.++ +|+...+.. . ....+++++|||+..+..... . . .....|++||+++++ .+.+....
T Consensus 43 ~l~~~~-~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~-~----~---~~~~~i~~~d~~tg~~~~~~~~~~ 113 (343)
T 2qe8_A 43 QVAELT-QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGN-Q----S---KSVPKLVAWDTLNNQLSRVIYLPP 113 (343)
T ss_dssp SEEEEE-TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHH-H----H---TSCCEEEEEETTTTEEEEEEECCT
T ss_pred EEEEEC-CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCC-C----c---CCCCeEEEEECCCCeEEEEEECCh
Confidence 466666 665543321 1 345678899998744433211 0 0 002379999998666 44443211
Q ss_pred CcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-----------
Q 002194 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL----------- 454 (954)
Q Consensus 386 ~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~----------- 454 (954)
.. ..+ ......++++|++.. +|..+... .....|++++. .+++..++...
T Consensus 114 ~~-~~~------~~~~~~v~vd~~~g~-~yvtd~~~--------~~~~~i~v~d~---~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 114 PI-TLS------NSFVNDLAVDLIHNF-VYISDPAP--------DDKAALIRVDL---QTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp TT-SCT------TCCCCEEEEETTTTE-EEEEECCS--------GGGCEEEEEET---TTCCEEEECTTCTTTSCCSCCC
T ss_pred hh-ccc------ccccceEEEecCCCE-EEEEcCcc--------CCCCeEEEEEC---CCCCEEEEecCCCcccccccce
Confidence 10 000 123467889987654 44433210 02346777774 33333222100
Q ss_pred -------------------ccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 455 -------------------DLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 455 -------------------~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
.....+++|||||+.|++..... .+||.++.
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~---~~l~~~~~ 224 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS---TSMYRIKS 224 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC---SEEEEEEH
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC---CeEEEEEH
Confidence 01235689999999998876543 47999875
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0017 Score=76.29 Aligned_cols=189 Identities=12% Similarity=0.047 Sum_probs=123.3
Q ss_pred CeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002194 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (954)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (954)
..|+|+. ...|..+++++.....+...... . ....++|.+++..||++-.
T Consensus 7 ~~Ll~s~----------~~~I~~i~l~~~~~~~~~~~~~~--~-~~~~l~~d~~~~~lywtD~----------------- 56 (628)
T 4a0p_A 7 AFLLFSR----------RADIRRISLETNNNNVAIPLTGV--K-EASALDFDVTDNRIYWTDI----------------- 56 (628)
T ss_dssp CEEEEEE----------TTEEEEEESSCTTCEEECCCCSC--S-CEEEEEEETTTTEEEEEET-----------------
T ss_pred cEEEEEe----------CCcEEEEECCCCCcceEEEcCCC--C-ceEEEEEECCCCEEEEEEC-----------------
Confidence 4688865 56899999988654433332221 0 0447889998888887710
Q ss_pred eeeccCCceeeechhhhhccCccccccccccccceEEEEEeCC-ceeEcC-CC-ccccccccCCCCcEEEEEeecCCccc
Q 002194 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEIG-PP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (954)
Q Consensus 281 ~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G-~~~~l~-~~-~~~~~~~~SpDGk~l~~~s~~~~~~~ 357 (954)
....|++++++| ..+.+. .+ ....++++.+.++.|+++...
T Consensus 57 -------------------------------~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~----- 100 (628)
T 4a0p_A 57 -------------------------------SLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTG----- 100 (628)
T ss_dssp -------------------------------TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT-----
T ss_pred -------------------------------CCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECC-----
Confidence 234588888854 333333 33 445677788788888776532
Q ss_pred ccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEE
Q 002194 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (954)
Q Consensus 358 ~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~ 437 (954)
...|++.+++|+..+.+..... ..++.++..|... .+||++.. ....|++
T Consensus 101 -------~~~I~v~~~dG~~~~~l~~~~l------------~~P~~iavdp~~G-~lY~tD~g----------~~~~I~r 150 (628)
T 4a0p_A 101 -------TNRIEVSKLDGQHRQVLVWKDL------------DSPRALALDPAEG-FMYWTEWG----------GKPKIDR 150 (628)
T ss_dssp -------TTEEEEEETTSTTCEEEECSSC------------CCEEEEEEETTTT-EEEEEECS----------SSCEEEE
T ss_pred -------CCEEEEEecCCCcEEEEEeCCC------------CCcccEEEccCCC-eEEEeCCC----------CCCEEEE
Confidence 2378999999876555543111 2346788988555 45664321 2458999
Q ss_pred EecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 438 ~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+++ +|...+.+...-....+++++++++.|+++.... ..|+.+++++.
T Consensus 151 ~~~---dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~---~~I~~~d~dG~ 198 (628)
T 4a0p_A 151 AAM---DGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDT---NLIESSNMLGL 198 (628)
T ss_dssp EET---TSCSCEEEECSCSSEEEEEEETTTTEEEEEETTT---TEEEEEETTSC
T ss_pred EeC---CCCceEEEECCCCCcceEEEccccCEEEEEECCC---CEEEEEcCCCC
Confidence 986 7777777655444567799999999998875433 57999999885
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0053 Score=64.52 Aligned_cols=193 Identities=16% Similarity=0.093 Sum_probs=105.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
....+.+++||+ |+++. .+...|++++.+ ++...+...... ..+..+.+.+||++.+.. .
T Consensus 21 ~p~~i~~d~~g~-l~v~~--------~~~~~v~~~~~~-~~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~-~------ 80 (300)
T 2qc5_A 21 GPYGITSSEDGK-VWFTQ--------HKANKISSLDQS-GRIKEFEVPTPD---AKVMCLIVSSLGDIWFTE-N------ 80 (300)
T ss_dssp CEEEEEECTTSC-EEEEE--------TTTTEEEEECTT-SCEEEEECSSTT---CCEEEEEECTTSCEEEEE-T------
T ss_pred CcceeeECCCCC-EEEEc--------CCCCeEEEECCC-CceEEEECCCCC---CcceeEEECCCCCEEEEe-c------
Confidence 456678899987 44432 124688999987 665543221110 114577788999744432 0
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCC--C-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP--P-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~--~-~~~~~~~~SpDGk~l 346 (954)
....|++++.+|+.+.+.. . .....+++++||+..
T Consensus 81 ------------------------------------------~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~ 118 (300)
T 2qc5_A 81 ------------------------------------------GANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIW 118 (300)
T ss_dssp ------------------------------------------TTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEE
T ss_pred ------------------------------------------CCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEE
Confidence 1234667776554443322 2 445677888998744
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
+... . ...++.++.++ +...+.. +.. ...+..+++.+||+ + |+..
T Consensus 119 v~~~-~------------~~~i~~~~~~g-~~~~~~~-~~~----------~~~~~~i~~d~~g~-l-~v~~-------- 163 (300)
T 2qc5_A 119 FTQL-N------------GDRIGKLTADG-TIYEYDL-PNK----------GSYPAFITLGSDNA-L-WFTE-------- 163 (300)
T ss_dssp EEET-T------------TTEEEEECTTS-CEEEEEC-SST----------TCCEEEEEECTTSS-E-EEEE--------
T ss_pred EEcc-C------------CCeEEEECCCC-CEEEccC-CCC----------CCCceeEEECCCCC-E-EEEe--------
Confidence 3322 1 12688888874 3333221 100 02345688999997 3 3322
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEee--cccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
...+.|++++. + ++...+.. .......++++++|+ |+++.... ..|++++.++
T Consensus 164 ---~~~~~i~~~~~---~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~---~~i~~~~~~g 218 (300)
T 2qc5_A 164 ---NQNNSIGRITN---T-GKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMG---NKIGRITTTG 218 (300)
T ss_dssp ---TTTTEEEEECT---T-CCEEEEECSSTTCCEEEEEECTTSS-EEEEETTT---TEEEEECTTC
T ss_pred ---cCCCeEEEECC---C-CcEEEeeCCCCCCCcceEEECCCCC-EEEEccCC---CEEEEEcCCC
Confidence 12346888873 3 34333321 122345688889885 55443322 4689998843
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0018 Score=72.47 Aligned_cols=136 Identities=7% Similarity=0.040 Sum_probs=79.4
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce--eecccCCCcc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIY 241 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~ 241 (954)
.|+.+++.. +..+.+.. .......++|++||++|+++... .+.....++.++.+++-. +.+.....
T Consensus 160 ~I~~id~~~----~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~----~~~~~~~v~~~~~~g~~~~~~~l~~~~~-- 227 (430)
T 3tc9_A 160 PTRLIDFEK----EYVSTVYS--GLSKVRTICWTHEADSMIITNDQ----NNNDRPNNYILTRESGFKVITELTKGQN-- 227 (430)
T ss_dssp EEEEEETTT----TEEEEEEC--CCSCEEEEEECTTSSEEEEEECC----SCTTSEEEEEEEGGGTSCSEEEEEECSS--
T ss_pred cEEEEECCC----CEEEEEec--CCCCcceEEEeCCCCEEEEEeCC----CCcccceEEEEeCCCceeeeeeeccCCC--
Confidence 567777632 33334422 22357788999999988776531 122344677777665432 22222111
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
...++++|++..|+++.. ...+|++++.
T Consensus 228 ----p~giavdp~~g~lyv~d~------------------------------------------------~~~~V~~~~~ 255 (430)
T 3tc9_A 228 ----CNGAETHPINGELYFNSW------------------------------------------------NAGQVFRYDF 255 (430)
T ss_dssp ----CCCEEECTTTCCEEEEET------------------------------------------------TTTEEEEEET
T ss_pred ----ceEEEEeCCCCEEEEEEC------------------------------------------------CCCEEEEEEC
Confidence 347888994445665500 2346889998
Q ss_pred -CCceeEcC-CC--ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC
Q 002194 322 -DGTVKEIG-PP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (954)
Q Consensus 322 -~G~~~~l~-~~--~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g 375 (954)
++....+. .. .....++|+|||++|++..... ..|+.++.++
T Consensus 256 ~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~------------~~I~~~~~d~ 301 (430)
T 3tc9_A 256 TTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ------------HYILRSDYDW 301 (430)
T ss_dssp TTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT------------TEEEEEEEET
T ss_pred CCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC------------CEEEEEeCCc
Confidence 55442332 21 3456789999999887775332 3788887774
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=97.78 E-value=2.7e-05 Score=82.35 Aligned_cols=69 Identities=19% Similarity=0.149 Sum_probs=44.2
Q ss_pred cEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC---CCccc---E
Q 002194 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFC---C 786 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~---p~~~~---a 786 (954)
+.|+..+.. +. ..........+|+.+.++.+ ....++.++||||||.+|..++.+. |+.+. .
T Consensus 49 ~~v~~~d~~---~~----~~~~~~~~~a~~~~~~i~~~-----~~~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~ 116 (283)
T 3tjm_A 49 IPTYGLQCT---RA----APLDSIHSLAAYYIDCIRQV-----QPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNS 116 (283)
T ss_dssp SCEEEECCC---TT----SCCSCHHHHHHHHHHHHTTT-----CCSSCCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCE
T ss_pred ceEEEEecC---CC----CCCCCHHHHHHHHHHHHHHh-----CCCCCEEEEEECHhHHHHHHHHHHHHHcCCCCCccce
Confidence 888885542 21 11122344455554444322 1125899999999999999998865 67788 8
Q ss_pred EEEeccC
Q 002194 787 GIARSGA 793 (954)
Q Consensus 787 ~v~~~~~ 793 (954)
+|++++.
T Consensus 117 lvlid~~ 123 (283)
T 3tjm_A 117 LFLFDGS 123 (283)
T ss_dssp EEEESCC
T ss_pred EEEEcCC
Confidence 8888753
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0078 Score=70.69 Aligned_cols=223 Identities=11% Similarity=0.037 Sum_probs=136.5
Q ss_pred ccceEEEEEeC-CceeE-cCC-C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCc
Q 002194 312 ATTQLVLVSLD-GTVKE-IGP-P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLA 387 (954)
Q Consensus 312 ~~~~l~~~~~~-G~~~~-l~~-~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~ 387 (954)
....|..++++ ..... +.- . .....++|++++..|+++... .+.|+.++++|+..+.+.....
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~------------~~~I~r~~~~g~~~~~v~~~g~- 79 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDIS------------LKTISRAFMNGSALEHVVEFGL- 79 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCSCEEEECSSC-
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECC------------CCeEEEEECCCCCcEEEEeCCC-
Confidence 34568899993 33222 221 2 456678999988888887633 2378888888876555443211
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe-ecccccCceeeccC
Q 002194 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDD 466 (954)
Q Consensus 388 ~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~spD 466 (954)
..+..+++.+.++.| ||++. ..+.|.+.++ +|...+.+. ..-....++++.|.
T Consensus 80 -----------~~P~GlAvD~~~~~L-Y~tD~-----------~~~~I~v~~~---dG~~~~~l~~~~l~~P~~iavdp~ 133 (628)
T 4a0p_A 80 -----------DYPEGMAVDWLGKNL-YWADT-----------GTNRIEVSKL---DGQHRQVLVWKDLDSPRALALDPA 133 (628)
T ss_dssp -----------SCCCEEEEETTTTEE-EEEET-----------TTTEEEEEET---TSTTCEEEECSSCCCEEEEEEETT
T ss_pred -----------CCcceEEEEeCCCEE-EEEEC-----------CCCEEEEEec---CCCcEEEEEeCCCCCcccEEEccC
Confidence 123467777666654 55332 2458899986 666666664 33334567899998
Q ss_pred CceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCC
Q 002194 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGAT 546 (954)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (954)
...|+++.+.. ..+|+++++++. ....+.+ ......+ ++++++++.|++...
T Consensus 134 ~G~lY~tD~g~--~~~I~r~~~dG~--~~~~l~~-~~~~P~G------lalD~~~~~LY~aD~----------------- 185 (628)
T 4a0p_A 134 EGFMYWTEWGG--KPKIDRAAMDGS--ERTTLVP-NVGRANG------LTIDYAKRRLYWTDL----------------- 185 (628)
T ss_dssp TTEEEEEECSS--SCEEEEEETTSC--SCEEEEC-SCSSEEE------EEEETTTTEEEEEET-----------------
T ss_pred CCeEEEeCCCC--CCEEEEEeCCCC--ceEEEEC-CCCCcce------EEEccccCEEEEEEC-----------------
Confidence 88888886543 368999999985 4444443 1221122 778888888888762
Q ss_pred CCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCce
Q 002194 547 PEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (954)
Q Consensus 547 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~ 621 (954)
....|+.+|++++..+.+...-.. ...+..+++.++++-+ ....|++++..+|+.
T Consensus 186 ---~~~~I~~~d~dG~~~~v~~~~l~~--------------P~glav~~~~ly~tD~---~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 186 ---DTNLIESSNMLGLNREVIADDLPH--------------PFGLTQYQDYIYWTDW---SRRSIERANKTSGQN 240 (628)
T ss_dssp ---TTTEEEEEETTSCSCEEEEECCSC--------------EEEEEEETTEEEEEET---TTTEEEEEETTTCCS
T ss_pred ---CCCEEEEEcCCCCceEEeeccCCC--------------ceEEEEECCEEEEecC---CCCEEEEEECCCCCc
Confidence 123599999987766433221111 1123445567766543 345788888666643
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.002 Score=68.62 Aligned_cols=93 Identities=8% Similarity=0.058 Sum_probs=53.9
Q ss_pred CCCCcEEEEEeecCCcccccccCCCCcceEEEeccC-ceE---EEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFV---RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 340 SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~---~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
+|||++|+++... ...|+++++++ +.. +.+... .....+++++||+ + |
T Consensus 175 s~dg~~lyv~d~~------------~~~I~~~~~~~~g~~~~~~~~~~~--------------~~P~gi~vd~dG~-l-~ 226 (306)
T 2p4o_A 175 KRFGNFLYVSNTE------------KMLLLRIPVDSTDKPGEPEIFVEQ--------------TNIDDFAFDVEGN-L-Y 226 (306)
T ss_dssp EEETTEEEEEETT------------TTEEEEEEBCTTSCBCCCEEEEES--------------CCCSSEEEBTTCC-E-E
T ss_pred CcCCCEEEEEeCC------------CCEEEEEEeCCCCCCCccEEEecc--------------CCCCCeEECCCCC-E-E
Confidence 8999988877633 23788888874 221 111110 2345789999995 3 4
Q ss_pred EEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec---ccccCceeec---cCCceEEEEEe
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL---DLRYGGISWC---DDSLALVYESW 475 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~---~~~~~~~~~s---pDg~~l~~~~~ 475 (954)
..+. ..+.|.+++. + ++...+... -.....++|+ ||++.|+....
T Consensus 227 va~~-----------~~~~V~~~~~---~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 227 GATH-----------IYNSVVRIAP---D-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EECB-----------TTCCEEEECT---T-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred EEeC-----------CCCeEEEECC---C-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 3221 2456888873 3 343333211 1234567888 88888877654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0038 Score=63.77 Aligned_cols=211 Identities=14% Similarity=0.163 Sum_probs=113.0
Q ss_pred eeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEE
Q 002194 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (954)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (954)
++|.+.. ...+..+|.||+++|+.+.+ +...|+.+|+++...+.+.-..... .+.+++.++|.+++
T Consensus 20 ~~l~g~~--~~lSGla~~~~~~~L~aV~d--------~~~~I~~ld~~g~v~~~i~l~g~~D----~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 20 KEIAGIT--NNISSLTWSAQSNTLFSTIN--------KPAAIVEMTTNGDLIRTIPLDFVKD----LETIEYIGDNQFVI 85 (255)
T ss_dssp EECTTCC--SCEEEEEEETTTTEEEEEEE--------TTEEEEEEETTCCEEEEEECSSCSS----EEEEEECSTTEEEE
T ss_pred eECCCcc--cCcceeEEeCCCCEEEEEEC--------CCCeEEEEeCCCCEEEEEecCCCCC----hHHeEEeCCCEEEE
Confidence 4554433 25888999999988877654 3678999999854444442221111 56888999997444
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--CCce---eEc------
Q 002194 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTV---KEI------ 328 (954)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~--~G~~---~~l------ 328 (954)
.. + +...|+++++ ++.. ..+
T Consensus 86 s~-----------------------E--------------------------~~~~l~~~~v~~~~~i~~~~~~~~~~~~ 116 (255)
T 3qqz_A 86 SD-----------------------E--------------------------RDYAIYVISLTPNSEVKILKKIKIPLQE 116 (255)
T ss_dssp EE-----------------------T--------------------------TTTEEEEEEECTTCCEEEEEEEECCCSS
T ss_pred EE-----------------------C--------------------------CCCcEEEEEcCCCCeeeeeeeecccccc
Confidence 22 0 1123444444 2211 111
Q ss_pred CC-CccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEe--ccCceEEEeccCCCcccCCccccccccCcccee
Q 002194 329 GP-PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWT--TDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (954)
Q Consensus 329 ~~-~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d--~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~ 405 (954)
.. .....+++|+|++++|+....+.+ ..++.++ ..+...+.+......... ......+++
T Consensus 117 ~~~N~g~EGLA~d~~~~~L~va~E~~p-----------~~i~~~~g~~~~~~l~i~~~~~~~~~~------~~~d~S~l~ 179 (255)
T 3qqz_A 117 SPTNCGFEGLAYSRQDHTFWFFKEKNP-----------IEVYKVNGLLSSNELHISKDKALQRQF------TLDDVSGAE 179 (255)
T ss_dssp CCCSSCCEEEEEETTTTEEEEEEESSS-----------EEEEEEESTTCSSCCEEEECHHHHHTC------CSSCCCEEE
T ss_pred ccccCCcceEEEeCCCCEEEEEECcCC-----------ceEEEEcccccCCceeeecchhhcccc------ccCCceeEE
Confidence 11 255688999999999888775542 2455554 111111111100000000 012345788
Q ss_pred eccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecc---------cccCceeeccCCceEEEEEec
Q 002194 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD---------LRYGGISWCDDSLALVYESWY 476 (954)
Q Consensus 406 wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~---------~~~~~~~~spDg~~l~~~~~~ 476 (954)
+.|....+++.. +....|..+|. +|.....+.-.. ....++++.++|+ |+.+ ++
T Consensus 180 ~dp~tg~lliLS------------~~s~~L~~~d~---~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE 242 (255)
T 3qqz_A 180 FNQQKNTLLVLS------------HESRALQEVTL---VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SE 242 (255)
T ss_dssp EETTTTEEEEEE------------TTTTEEEEECT---TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ET
T ss_pred EcCCCCeEEEEE------------CCCCeEEEEcC---CCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cC
Confidence 888776665552 23456777774 544222221111 2446799999996 5555 33
Q ss_pred cccceEEEEEcCCC
Q 002194 477 KTRRTRTWVISPGS 490 (954)
Q Consensus 477 ~~~~~~l~~~d~~~ 490 (954)
. ..+|++..+.
T Consensus 243 ~---n~~y~f~~~~ 253 (255)
T 3qqz_A 243 P---NRFYRFTPQS 253 (255)
T ss_dssp T---TEEEEEEC--
T ss_pred C---ceEEEEEecC
Confidence 3 2588876543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0079 Score=64.40 Aligned_cols=144 Identities=13% Similarity=0.036 Sum_probs=76.6
Q ss_pred EEEEEe-CCceeEcCCC------ccccccccCC-CCcEEEEEeecCCccc-----ccccCCCCcceEEEeccCceEEEec
Q 002194 316 LVLVSL-DGTVKEIGPP------AVYTSLDPSP-DEKYILISSIHRPYSF-----IVPCGRFPRQVGVWTTDGIFVRELC 382 (954)
Q Consensus 316 l~~~~~-~G~~~~l~~~------~~~~~~~~Sp-DGk~l~~~s~~~~~~~-----~~~~~~~~~~l~l~d~~g~~~~~l~ 382 (954)
|++++. +|..+.+... .....+++.| ||+ |+++........ ........+.++.++.++++.+.+.
T Consensus 103 i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~ 181 (322)
T 2fp8_A 103 LSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 181 (322)
T ss_dssp EEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec
Confidence 566666 4544443221 2345678899 885 444432210000 0000011246888888776655432
Q ss_pred cCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCC---CCceEEeecccccC
Q 002194 383 DLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG---EGPEILHKLDLRYG 459 (954)
Q Consensus 383 ~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g---~~~~~l~~~~~~~~ 459 (954)
.. ......++|+|||+.+++. + ...+.|+++++ ++ +..+.+....+ ..
T Consensus 182 ~~-------------~~~p~gia~~~dg~~lyv~-d-----------~~~~~I~~~~~---~~~~~~~~~~~~~~~g-P~ 232 (322)
T 2fp8_A 182 KE-------------LHVPGGAEVSADSSFVLVA-E-----------FLSHQIVKYWL---EGPKKGTAEVLVKIPN-PG 232 (322)
T ss_dssp EE-------------ESCCCEEEECTTSSEEEEE-E-----------GGGTEEEEEES---SSTTTTCEEEEEECSS-EE
T ss_pred cC-------------CccCcceEECCCCCEEEEE-e-----------CCCCeEEEEEC---CCCcCCccceEEeCCC-CC
Confidence 21 0123568999999865554 2 12457888886 33 23333333333 56
Q ss_pred ceeeccCCceEEEEEecc-------ccceEEEEEcCCC
Q 002194 460 GISWCDDSLALVYESWYK-------TRRTRTWVISPGS 490 (954)
Q Consensus 460 ~~~~spDg~~l~~~~~~~-------~~~~~l~~~d~~~ 490 (954)
++++.+||+ |+.+.... .....|++++.++
T Consensus 233 gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G 269 (322)
T 2fp8_A 233 NIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFG 269 (322)
T ss_dssp EEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTS
T ss_pred CeEECCCCC-EEEEecCcccccccCCCccEEEEECCCC
Confidence 688999997 44444331 1136799998865
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.003 Score=67.69 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=45.9
Q ss_pred ceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc---eEEEeccCCCcc
Q 002194 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI---FVRELCDLPLAE 388 (954)
Q Consensus 314 ~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~---~~~~l~~~~~~~ 388 (954)
..|++++. +++.+.+... .....++|+|||++|+++.... ..|+++++++. ..+.+...+
T Consensus 165 g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~------------~~I~~~~~~~~~~~~~~~~~~~~--- 229 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLS------------HQIVKYWLEGPKKGTAEVLVKIP--- 229 (322)
T ss_dssp EEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGG------------TEEEEEESSSTTTTCEEEEEECS---
T ss_pred ceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCC------------CeEEEEECCCCcCCccceEEeCC---
Confidence 56899998 6765554333 4455689999999888775332 27888888753 222222111
Q ss_pred cCCccccccccCccceeeccCCC
Q 002194 389 DIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 389 ~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
++..+++.+||+
T Consensus 230 -----------gP~gi~~d~~G~ 241 (322)
T 2fp8_A 230 -----------NPGNIKRNADGH 241 (322)
T ss_dssp -----------SEEEEEECTTSC
T ss_pred -----------CCCCeEECCCCC
Confidence 134688999996
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.014 Score=65.37 Aligned_cols=158 Identities=8% Similarity=0.081 Sum_probs=93.8
Q ss_pred cccceeecC-CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 190 KLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 190 ~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
....++|+| ++..|+++.. ...|++++++++..+.+...... ...++|++||+.|+++..... .
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~---------~~~I~~id~~~~~v~~~~~~~~~-----P~~ia~d~~G~~lyvad~~~~-~ 202 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGE---------QHPTRLIDFEKEYVSTVYSGLSK-----VRTICWTHEADSMIITNDQNN-N 202 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEB---------TEEEEEEETTTTEEEEEECCCSC-----EEEEEECTTSSEEEEEECCSC-T
T ss_pred CCCEEEECCCCCCeEEEEeC---------CCcEEEEECCCCEEEEEecCCCC-----cceEEEeCCCCEEEEEeCCCC-c
Confidence 356678999 5667666532 17899999998877666542221 457899999998887711000 0
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCce---eEcCCCccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTV---KEIGPPAVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~---~~l~~~~~~~~~~~SpDGk~ 345 (954)
....++.++.+|.. +.+........++++|++.+
T Consensus 203 -------------------------------------------~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~ 239 (430)
T 3tc9_A 203 -------------------------------------------DRPNNYILTRESGFKVITELTKGQNCNGAETHPINGE 239 (430)
T ss_dssp -------------------------------------------TSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCC
T ss_pred -------------------------------------------ccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCE
Confidence 01124444443322 22222234567789996556
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
|+++... ...|+.++.+++....+..... ....+.++|+|||+.+++. +
T Consensus 240 lyv~d~~------------~~~V~~~~~~~~~~~~~~~~~~-----------~~~P~gia~~pdG~~lyv~-d------- 288 (430)
T 3tc9_A 240 LYFNSWN------------AGQVFRYDFTTQETTPLFTIQD-----------SGWEFHIQFHPSGNYAYIV-V------- 288 (430)
T ss_dssp EEEEETT------------TTEEEEEETTTTEEEEEEECSS-----------SSCCEEEEECTTSSEEEEE-E-------
T ss_pred EEEEECC------------CCEEEEEECCCCcEEEEEEcCC-----------CCcceeEEEcCCCCEEEEE-E-------
Confidence 6666532 2378999998776644432211 0234679999999855443 2
Q ss_pred cccccCCCeEEEEec
Q 002194 426 KVEVTPRDIIYTQQA 440 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~ 440 (954)
.....|++++.
T Consensus 289 ----~~~~~I~~~~~ 299 (430)
T 3tc9_A 289 ----VNQHYILRSDY 299 (430)
T ss_dssp ----TTTTEEEEEEE
T ss_pred ----CCCCEEEEEeC
Confidence 12457777775
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.019 Score=58.50 Aligned_cols=115 Identities=14% Similarity=0.187 Sum_probs=72.0
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
..+++++|.||++.|+.+.+.. ..|+.+|.+++..+.+..... .....+++.++|.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~------------~~I~~ld~~g~v~~~i~l~g~------------~D~EGIa~~~~g~ 82 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKP------------AAIVEMTTNGDLIRTIPLDFV------------KDLETIEYIGDNQ 82 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETT------------EEEEEEETTCCEEEEEECSSC------------SSEEEEEECSTTE
T ss_pred cCcceeEEeCCCCEEEEEECCC------------CeEEEEeCCCCEEEEEecCCC------------CChHHeEEeCCCE
Confidence 5678899999999888877553 278889998766666543111 1234677887774
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEee---------cccccCceeeccCCceEEEEEeccccceE
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK---------LDLRYGGISWCDDSLALVYESWYKTRRTR 482 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~---------~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 482 (954)
++.++. ..+.++++++ ...+....+.. ......+++|+|++++|+.+..... ..
T Consensus 83 --~~vs~E-----------~~~~l~~~~v--~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p--~~ 145 (255)
T 3qqz_A 83 --FVISDE-----------RDYAIYVISL--TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP--IE 145 (255)
T ss_dssp --EEEEET-----------TTTEEEEEEE--CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS--EE
T ss_pred --EEEEEC-----------CCCcEEEEEc--CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC--ce
Confidence 222221 2346777775 12222221211 1223467999999999888776654 57
Q ss_pred EEEEc
Q 002194 483 TWVIS 487 (954)
Q Consensus 483 l~~~d 487 (954)
||.++
T Consensus 146 i~~~~ 150 (255)
T 3qqz_A 146 VYKVN 150 (255)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99988
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0054 Score=62.28 Aligned_cols=132 Identities=11% Similarity=0.100 Sum_probs=76.3
Q ss_pred ccceEEEEEe-CCcee-EcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcc
Q 002194 312 ATTQLVLVSL-DGTVK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAE 388 (954)
Q Consensus 312 ~~~~l~~~~~-~G~~~-~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~ 388 (954)
+.+.|..+|+ +|++. .+..+..+..-.++++|+.|+...-. .+.++++|.++.+ .+++....
T Consensus 63 g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~------------~~~v~v~D~~t~~~~~ti~~~~--- 127 (262)
T 3nol_A 63 GRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK------------NGLGFVWNIRNLRQVRSFNYDG--- 127 (262)
T ss_dssp TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------------SSEEEEEETTTCCEEEEEECSS---
T ss_pred CCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee------------CCEEEEEECccCcEEEEEECCC---
Confidence 3467889999 88643 33323333333355678887666522 2389999998644 44444311
Q ss_pred cCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec--ccccC---ceee
Q 002194 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRYG---GISW 463 (954)
Q Consensus 389 ~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--~~~~~---~~~~ 463 (954)
.....++||+.++.. ++.+.|+.+|. .+......+.-. ...+. .+.|
T Consensus 128 -------------eG~glt~dg~~L~~S-------------dGs~~i~~iDp--~T~~v~~~I~V~~~g~~~~~lNELe~ 179 (262)
T 3nol_A 128 -------------EGWGLTHNDQYLIMS-------------DGTPVLRFLDP--ESLTPVRTITVTAHGEELPELNELEW 179 (262)
T ss_dssp -------------CCCCEEECSSCEEEC-------------CSSSEEEEECT--TTCSEEEEEECEETTEECCCEEEEEE
T ss_pred -------------CceEEecCCCEEEEE-------------CCCCeEEEEcC--CCCeEEEEEEeccCCccccccceeEE
Confidence 224467888765544 33568999984 333333444321 22222 3567
Q ss_pred ccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 464 CDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 464 spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
. || .|+...+.. ..|.+||+.++
T Consensus 180 ~-~G-~lyan~w~~---~~I~vIDp~tG 202 (262)
T 3nol_A 180 V-DG-EIFANVWQT---NKIVRIDPETG 202 (262)
T ss_dssp E-TT-EEEEEETTS---SEEEEECTTTC
T ss_pred E-CC-EEEEEEccC---CeEEEEECCCC
Confidence 6 66 466555444 47999999997
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0006 Score=75.48 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=31.8
Q ss_pred CcEEEEeeChHHHHHHHHHHh--------------------------CCCcccEEEEeccCC
Q 002194 759 SKIAVGGHSYGAFMTANLLAH--------------------------APHLFCCGIARSGAY 794 (954)
Q Consensus 759 ~ri~l~G~S~GG~~a~~~a~~--------------------------~p~~~~a~v~~~~~~ 794 (954)
+++.|+||||||.++..++.. +|++++.+|++++..
T Consensus 151 ~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~~V~slv~i~tP~ 212 (431)
T 2hih_A 151 HPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNMVTSITTIATPH 212 (431)
T ss_dssp BCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCSCEEEEEEESCCT
T ss_pred CCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCcccceeEEEEECCCC
Confidence 689999999999999998876 678999999998754
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0014 Score=71.47 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=30.9
Q ss_pred CCcEEEEeeChHHHHHHHHHHh-------------------CC------CcccEEEEeccCC
Q 002194 758 PSKIAVGGHSYGAFMTANLLAH-------------------AP------HLFCCGIARSGAY 794 (954)
Q Consensus 758 ~~ri~l~G~S~GG~~a~~~a~~-------------------~p------~~~~a~v~~~~~~ 794 (954)
.+++.|+||||||.++..++.+ +| ++++.+|++++..
T Consensus 103 ~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~~~V~sLV~i~tP~ 164 (387)
T 2dsn_A 103 GGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGHHFVLSVTTIATPH 164 (387)
T ss_dssp TCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCCCEEEEEEESCCT
T ss_pred CCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCccccccccceeEEEEECCCC
Confidence 4689999999999999999872 35 6899999998754
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0073 Score=61.30 Aligned_cols=195 Identities=11% Similarity=0.122 Sum_probs=109.5
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
.....|+ || +|+.+.. ..+...|.++|+++|+..+-...+... ..-..+++|+.|+.+.-
T Consensus 45 tqGL~~~-~~-~LyestG------~~g~S~v~~vD~~Tgkv~~~~~l~~~~-----FgeGit~~g~~ly~ltw------- 104 (262)
T 3nol_A 45 TEGFFYR-NG-YFYESTG------LNGRSSIRKVDIESGKTLQQIELGKRY-----FGEGISDWKDKIVGLTW------- 104 (262)
T ss_dssp EEEEEEE-TT-EEEEEEE------ETTEEEEEEECTTTCCEEEEEECCTTC-----CEEEEEEETTEEEEEES-------
T ss_pred cceEEEE-CC-EEEEECC------CCCCceEEEEECCCCcEEEEEecCCcc-----ceeEEEEeCCEEEEEEe-------
Confidence 3557788 55 5555442 235679999999999876554444321 12234566778876610
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCCccccccccCCCCcEEEE
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILI 348 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~~~~~~~~~SpDGk~l~~ 348 (954)
....++++|. +++ ..++.-+. ....+++||++|+.
T Consensus 105 -----------------------------------------~~~~v~v~D~~t~~~~~ti~~~~--eG~glt~dg~~L~~ 141 (262)
T 3nol_A 105 -----------------------------------------KNGLGFVWNIRNLRQVRSFNYDG--EGWGLTHNDQYLIM 141 (262)
T ss_dssp -----------------------------------------SSSEEEEEETTTCCEEEEEECSS--CCCCEEECSSCEEE
T ss_pred -----------------------------------------eCCEEEEEECccCcEEEEEECCC--CceEEecCCCEEEE
Confidence 2346889998 764 34444322 44567789988766
Q ss_pred EeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
+. .. ..|+++|.++. ..+.+.... ...|. ...+.+.|. ||+ +|...
T Consensus 142 Sd-Gs------------~~i~~iDp~T~~v~~~I~V~~--~g~~~------~~lNELe~~-~G~--lyan~--------- 188 (262)
T 3nol_A 142 SD-GT------------PVLRFLDPESLTPVRTITVTA--HGEEL------PELNELEWV-DGE--IFANV--------- 188 (262)
T ss_dssp CC-SS------------SEEEEECTTTCSEEEEEECEE--TTEEC------CCEEEEEEE-TTE--EEEEE---------
T ss_pred EC-CC------------CeEEEEcCCCCeEEEEEEecc--CCccc------cccceeEEE-CCE--EEEEE---------
Confidence 54 22 27889998864 334443311 01111 112235676 674 34321
Q ss_pred cccCCCeEEEEecCCCCCCCceEEeec------------ccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 428 EVTPRDIIYTQQAEPVQGEGPEILHKL------------DLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~------------~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
-..+.|.++|. .+|.-...+.-. ....++++|+|+++.|+.+.. ....||.+.+
T Consensus 189 --w~~~~I~vIDp--~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK---~Wp~~~ev~~ 254 (262)
T 3nol_A 189 --WQTNKIVRIDP--ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK---LWPKVFEITL 254 (262)
T ss_dssp --TTSSEEEEECT--TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET---TCSEEEEEEE
T ss_pred --ccCCeEEEEEC--CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC---CCCceEEEEE
Confidence 12457888884 343333344221 112357999999998877642 2355666543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.29 Score=58.00 Aligned_cols=27 Identities=19% Similarity=-0.037 Sum_probs=18.7
Q ss_pred CCCeEEEEEeeccccCCCCceEEEEEECCCCceeec
Q 002194 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL 234 (954)
Q Consensus 199 DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 234 (954)
++.+|++.. ....|+.+|+++|+..--
T Consensus 127 ~~~~v~v~~---------~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 127 WKGKVYVGA---------WDGRLIALDAATGKEVWH 153 (677)
T ss_dssp ETTEEEEEC---------TTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEc---------CCCEEEEEECCCCCEEee
Confidence 466676643 256899999988877543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.013 Score=63.57 Aligned_cols=67 Identities=9% Similarity=-0.066 Sum_probs=37.6
Q ss_pred cccceeecCC---CCeEEEEEeeccccCCCCceEEEEEECCCCc---eeeccc-CC--CccccccccceeEecCCeEEEE
Q 002194 190 KLNFVTWSQD---GKHLAFSIRIDAEDSSSSKLRVWVADVDTGK---ARPLFQ-SP--DIYLNAIFDNFVWVNNSTLLVC 260 (954)
Q Consensus 190 ~~~~~~wSPD---G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~---~~~lt~-~~--~~~~~~~~~~~~wspDG~~l~~ 260 (954)
....++|+|| +++|+++.... . ......|++++.+++. .+.+.. .+ ... ......++|.|||. |++
T Consensus 76 ~p~gia~~pdf~~~g~lYv~~~~~--~-~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~-~h~~~~l~~~pdG~-Lyv 150 (352)
T 2ism_A 76 GLLGLALHPRFPQEPYVYAYRTVA--E-GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHG-LHSGGRIAFGPDGM-LYV 150 (352)
T ss_dssp SEEEEEECTTTTTSCEEEEEEEEC--T-TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTC-CCCCCCEEECTTSC-EEE
T ss_pred CceeEEECCCCCCCCEEEEEEecC--C-CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCC-CcCCceEEECCCCC-EEE
Confidence 4667899999 77776654311 0 0123689999887652 222211 22 110 01135889999994 666
Q ss_pred E
Q 002194 261 T 261 (954)
Q Consensus 261 ~ 261 (954)
+
T Consensus 151 ~ 151 (352)
T 2ism_A 151 T 151 (352)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.013 Score=63.89 Aligned_cols=83 Identities=13% Similarity=0.067 Sum_probs=51.3
Q ss_pred cceEEEEEe-CCceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE---EEeccCCCcc
Q 002194 313 TTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV---RELCDLPLAE 388 (954)
Q Consensus 313 ~~~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~---~~l~~~~~~~ 388 (954)
.+.|+++++ ++....+. ..++.++|||+| +++...+ +++.+|+.++++. +.+...+.-.
T Consensus 145 dG~L~v~dl~~~~~~~~~--~~Vs~v~WSpkG--~~vg~~d-------------g~i~~~~~~~~~~~~k~~I~~Pp~~~ 207 (388)
T 1xip_A 145 VNDLSALDLRTKSTKQLA--QNVTSFDVTNSQ--LAVLLKD-------------RSFQSFAWRNGEMEKQFEFSLPSELE 207 (388)
T ss_dssp TSEEEEEETTTCCEEEEE--ESEEEEEECSSE--EEEEETT-------------SCEEEEEEETTEEEEEEEECCCHHHH
T ss_pred CCCEEEEEccCCcccccc--CCceEEEEcCCc--eEEEEcC-------------CcEEEEcCCCccccccceecCCcccc
Confidence 456889999 66554433 467899999999 4444422 3788999998774 3443322110
Q ss_pred cCCccccccccCccceeeccCCCCceEE
Q 002194 389 DIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 389 ~~p~~~~~~~~g~~~~~wspDg~~i~~~ 416 (954)
+. .+....+.++.|.++++.++.+
T Consensus 208 ~~----~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 208 EL----PVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp TS----CTTTSEEEEEEESSSSEEEEEE
T ss_pred cc----cCCCeeEEEEEEecCCeEEEEE
Confidence 00 0011345679999999876655
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.11 Score=56.22 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=45.2
Q ss_pred cceeeccCCCCceEEEEeccCCCccc---cccCCCeEEEEecCCCCCC--------CceEEeecccccCceeeccCCceE
Q 002194 402 RSINWRSDKPSTLYWAETQDGGDAKV---EVTPRDIIYTQQAEPVQGE--------GPEILHKLDLRYGGISWCDDSLAL 470 (954)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~g~--------~~~~l~~~~~~~~~~~~spDg~~l 470 (954)
..++|.|||+ |++. . .+.+.... .....+.|++++. +|. ..+.+..+-.....++|+|+...|
T Consensus 138 ~~l~~~pDG~-Lyvt-~-G~~~~~~~~~d~~~~~G~I~ri~~---dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l 211 (354)
T 3a9g_A 138 GRIRFGPDGM-LYIT-T-GDAADPRLAQDLSSLAGKILRVDE---EGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVM 211 (354)
T ss_dssp CCEEECTTSC-EEEE-C-CCTTCGGGGTCTTCCSSEEEEECT---TSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCE
T ss_pred ceEEECCCCc-EEEE-E-CCCCCCccccCCCCCCeEEEEEcC---CCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCE
Confidence 5799999995 4443 1 12111111 1123467888885 443 234555555566789999955556
Q ss_pred EEEEeccccceEEEEEcC
Q 002194 471 VYESWYKTRRTRTWVISP 488 (954)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~ 488 (954)
+++........+|.++..
T Consensus 212 ~v~d~g~~~~dei~~i~~ 229 (354)
T 3a9g_A 212 VATEHGPVGHDEVNIILK 229 (354)
T ss_dssp EEEECCSSSCCEEEEECT
T ss_pred EEEecCCCCCcEEEEecC
Confidence 665443333345666654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.085 Score=59.18 Aligned_cols=62 Identities=8% Similarity=0.170 Sum_probs=42.3
Q ss_pred ccceeecC-CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeE-------ecCCeEEEEE
Q 002194 191 LNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW-------VNNSTLLVCT 261 (954)
Q Consensus 191 ~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w-------spDG~~l~~~ 261 (954)
....+++| |+..|+.+.+ ....|+++|++++....+.......+++ ...++| ++||+.|+++
T Consensus 141 p~~la~dp~~~~~Lyv~~~--------~~~~i~~ID~~~~~v~~l~~~~~~~~~~-p~~ia~~~~~~~~d~~G~~lyva 210 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYD--------GHKAIQLIDLKNRMLSSPLNINTIPTNR-IRSIAFNKKIEGYADEAEYMIVA 210 (496)
T ss_dssp EEEEEEETTEEEEEEEEEE--------TEEEEEEEETTTTEEEEEECCTTSSCSB-EEEEEECCCBTTTBCTTCEEEEE
T ss_pred CCEEEEccCCCCEEEEEEC--------CCCeEEEEECCCCEEEEEEccCccccCC-CcEEEEeecccccCCCCCEEEEE
Confidence 44668899 5666666543 2467999999998887765543322111 457889 9999988877
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.04 Score=61.52 Aligned_cols=134 Identities=10% Similarity=0.007 Sum_probs=73.2
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce--eecccCCCcc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIY 241 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~ 241 (954)
.|+.++..+ +....+.. .......++|+|||+ |+++... .......++.++.+++.. ..+.....
T Consensus 163 ~I~~id~~~----g~v~~~~~--~~~~P~giavd~dG~-lyVad~~----~~~~~~gv~~~~~~~~~~~~~~~~~~~~-- 229 (433)
T 4hw6_A 163 AFRHVDFVN----QYVDIKTT--NIGQCADVNFTLNGD-MVVVDDQ----SSDTNTGIYLFTRASGFTERLSLCNARG-- 229 (433)
T ss_dssp CEEEEETTT----TEEEEECC--CCSCEEEEEECTTCC-EEEEECC----SCTTSEEEEEECGGGTTCCEEEEEECSS--
T ss_pred CEEEEECCC----CEEEEeec--CCCCccEEEECCCCC-EEEEcCC----CCcccceEEEEECCCCeeccccccccCC--
Confidence 567777632 44333321 223567789999999 6554321 112234466666554332 12211111
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
...+++.|++..|+++. ....+|++++.
T Consensus 230 ----P~giavd~~~G~lyv~d------------------------------------------------~~~~~V~~~d~ 257 (433)
T 4hw6_A 230 ----AKTCAVHPQNGKIYYTR------------------------------------------------YHHAMISSYDP 257 (433)
T ss_dssp ----BCCCEECTTTCCEEECB------------------------------------------------TTCSEEEEECT
T ss_pred ----CCEEEEeCCCCeEEEEE------------------------------------------------CCCCEEEEEEC
Confidence 34678888444566540 02345888888
Q ss_pred -CCce-eEcCC-C--ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc
Q 002194 322 -DGTV-KEIGP-P--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (954)
Q Consensus 322 -~G~~-~~l~~-~--~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~ 374 (954)
+|.. +.+.. . .....++|+|||++|+++.... ..|+.++.+
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~------------~~I~~~~~d 303 (433)
T 4hw6_A 258 ATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK------------HCIYRVDYN 303 (433)
T ss_dssp TTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT------------TEEEEEEBC
T ss_pred CCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC------------CEEEEEeCC
Confidence 5765 33322 1 2223589999999888776332 267777766
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 954 | ||||
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 1e-19 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 9e-18 | |
| d2gzsa1 | 265 | c.69.1.38 (A:41-305) Enterobactin and salmochelin | 1e-17 | |
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 5e-17 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 7e-14 | |
| d1wb4a1 | 273 | c.69.1.2 (A:803-1075) Feruloyl esterase domain of | 5e-13 | |
| d1l7aa_ | 318 | c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill | 3e-12 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 6e-12 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 7e-12 | |
| d1jjfa_ | 255 | c.69.1.2 (A:) Feruloyl esterase domain of the cell | 9e-11 | |
| d3c8da2 | 246 | c.69.1.2 (A:151-396) Enterochelin esterase, cataly | 2e-10 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 2e-10 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 2e-10 | |
| d1pv1a_ | 299 | c.69.1.34 (A:) Hypothetical esterase YJL068C {Bake | 5e-10 | |
| d1lnsa3 | 405 | c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopep | 2e-09 | |
| d2jbwa1 | 360 | c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine h | 1e-07 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 3e-06 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 7e-05 | |
| d1ju3a2 | 347 | c.69.1.21 (A:5-351) Bacterial cocaine esterase N-t | 2e-04 | |
| d1jjia_ | 311 | c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeogl | 3e-04 | |
| d1dina_ | 233 | c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas | 0.001 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 0.001 | |
| d1thta_ | 302 | c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase | 0.002 | |
| d1k32a2 | 281 | b.68.7.1 (A:39-319) Tricorn protease N-terminal do | 0.003 | |
| d1vkha_ | 263 | c.69.1.32 (A:) Putative serine hydrolase Ydr428c { | 0.003 |
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.9 bits (216), Expect = 1e-19
Identities = 38/257 (14%), Positives = 72/257 (28%), Gaps = 19/257 (7%)
Query: 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL 707
D L + P + + P L + +F S ++
Sbjct: 11 DDYNLPMQILKPATFTDTT--HYPLLLVVDGT--------PGSQSVAEKFE--VSWETVM 58
Query: 708 WLARGFAILGGPTTPIIGEGDE---EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVG 764
+ G ++ +G + E R AV +++ +++AV
Sbjct: 59 VSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVF 118
Query: 765 GHSYGAFMTANLLAHAP----HLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEM 820
G YG +++ +L F CG A S + L F L + EM
Sbjct: 119 GKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDNRAYEM 178
Query: 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880
+ + + + + L A L I P ESH + +
Sbjct: 179 TKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSS 238
Query: 881 ESIMHVLWETDRWLQKY 897
H+ + +
Sbjct: 239 SLKQHLYRSIINFFVEC 255
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 82.2 bits (201), Expect = 9e-18
Identities = 46/263 (17%), Positives = 87/263 (33%), Gaps = 17/263 (6%)
Query: 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFP 698
+ + + + + + LPP +D SK P L Y G + + F
Sbjct: 3 SKKLDFIILNETKFWYQMILPPHFDKSK--KYPLLLDVYAG--------PCSQKADTVFR 52
Query: 699 RIGSTSVLLWLARGFA---ILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGV 755
+ + L G + + N R V A + + G
Sbjct: 53 --LNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGF 110
Query: 756 AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT--LTPFGFQNEDRTLWEA 813
+IA+ G SYG ++T+ +L +F CGIA + + + + E
Sbjct: 111 VDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPED 170
Query: 814 TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873
+ S MS + K + + + QS + AL G + + E
Sbjct: 171 NLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 230
Query: 874 SHGYAARESIMHVLWETDRWLQK 896
HG A+ + H+ ++++
Sbjct: 231 DHGIASSTAHQHIYTHMSHFIKQ 253
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Score = 82.0 bits (201), Expect = 1e-17
Identities = 30/258 (11%), Positives = 57/258 (22%), Gaps = 22/258 (8%)
Query: 640 ELIKYQRKDGV-QLSATLYLPPGYDPSKDGPLPCLFWSYPG-EFKSKDAAGQVRGSPNEF 697
+ DG +P P+ P L+ D + S
Sbjct: 14 SATSFDSVDGTRHYRVWTAVPNTTAPAS--GYPILYMLDGNAVMDRLDDELLKQLSEKTP 71
Query: 698 PRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQ--------LVACAEAAVEE 749
P I + L TP + + + +
Sbjct: 72 PVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPK 131
Query: 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRT 809
V + + + GHSYG + + + + S + R +
Sbjct: 132 VEQGLNIDRQRRGLWGHSYGGLFVLDSWLSSSYFRSY-YSASPSLGRGYDALLSRVTAVE 190
Query: 810 LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869
+ + ++ + + E + + LK G
Sbjct: 191 PLQFCTKHLAIM-------EGSATQGDNRETHAV--GVLSKIHTTLTILKDKGVNAVFWD 241
Query: 870 LPFESHGYAARESIMHVL 887
P HG S L
Sbjct: 242 FPNLGHGPMFNASFRQAL 259
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 80.9 bits (198), Expect = 5e-17
Identities = 36/290 (12%), Positives = 76/290 (26%), Gaps = 34/290 (11%)
Query: 628 PHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFW--------SYPG 679
L +++ + + G ++ L +P ++ LPC+ +P
Sbjct: 45 RMESH-LKTVEAYDVTFSGYRGQRIKGWLLVPKL----EEEKLPCVVQYIGYNGGRGFPH 99
Query: 680 EFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQL 739
++ + G + + + + + G + + ++
Sbjct: 100 DWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRV 159
Query: 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN---- 795
A AVE +I + G S G + + A + +
Sbjct: 160 FTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRRA 219
Query: 796 RTLTPFGFQNEDR--------TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTL 847
L E T A + K P L G DN
Sbjct: 220 VQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNI--CP 277
Query: 848 TMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
+N G + I P+ +H + + ++L+K
Sbjct: 278 PSTVFAAYNYYAGP---KEIRIYPYNNHEGGGSFQAVEQV----KFLKKL 320
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 71.0 bits (172), Expect = 7e-14
Identities = 32/278 (11%), Positives = 65/278 (23%), Gaps = 32/278 (11%)
Query: 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR 699
I Y KDG ++ + G DG P + Y G + +PN
Sbjct: 8 VQIFYPSKDGTKIPMFIVHKKGIKL--DGSHPAFLYGYGG--------FNISITPNYSVS 57
Query: 700 IGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPS 759
+ A + G AA + +
Sbjct: 58 RLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKR 117
Query: 760 KIAVGGHSYGAFMTANLLAHAPHLFCCGIA------------RSGAYNRTLTPFGFQNED 807
GG + G + C G T +
Sbjct: 118 LTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQH 177
Query: 808 RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNAL-------KG 860
S + + + +LL+ + D+ + S +F L +
Sbjct: 178 FEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVV--PLHSLKFIATLQYIVGRSRK 235
Query: 861 HGALCRLVILPFESHGYAARES-IMHVLWETDRWLQKY 897
+ + HG + ++ + + ++ +
Sbjct: 236 QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARC 273
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Score = 68.3 bits (165), Expect = 5e-13
Identities = 37/253 (14%), Positives = 63/253 (24%), Gaps = 9/253 (3%)
Query: 627 FPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDA 686
+ +P PQ + K Y +G S +YLP GYDP+K + + G
Sbjct: 17 YLNPCPQAGRIVK--ETYTGING-TKSLNVYLPYGYDPNK--KYNIFYLMHGGGENENTI 71
Query: 687 AGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAA 746
N L L G E + + A
Sbjct: 72 FSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQNFYQEFRQNVIPFVESKYSTYA 131
Query: 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE 806
+ A GG + G T ++ + + SG Y +P N
Sbjct: 132 ESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGNSPQDKANS 191
Query: 807 DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR 866
+ +A + I + + F
Sbjct: 192 IAEAINRSGLSKREYFVFAATG-SEDIAYANMNPQIEA---MKALPHFDYTSDFSKGNFY 247
Query: 867 LVILPFESHGYAA 879
++ P +H +
Sbjct: 248 FLVAPGATHWWGY 260
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Score = 66.7 bits (161), Expect = 3e-12
Identities = 42/291 (14%), Positives = 81/291 (27%), Gaps = 42/291 (14%)
Query: 628 PHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAA 687
P YP ++ + Y+ +++ +P +GP P + +
Sbjct: 46 PVDYP-ADGVKVYRLTYKSFGNARITGWYAVPDK-----EGPHPAIVKYHGYNASYDGEI 99
Query: 688 GQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE-------GDEEANDRFVEQLV 740
++ + G L RG + G G + + + +
Sbjct: 100 HEMV----NWALHGYA-TFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVY 154
Query: 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL-- 798
A A+E + ++I V G S G +T A + N
Sbjct: 155 LDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAI 214
Query: 799 ------------TPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGT 846
+ F T +A T A+++K P+L+ G D T
Sbjct: 215 DVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKV--T 272
Query: 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
+N L+ L + + H Y E + ++
Sbjct: 273 PPSTVFAAYNHLETKK---ELKVYRYFGHEYIP-----AFQTEKLAFFKQI 315
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 64.5 bits (155), Expect = 6e-12
Identities = 40/263 (15%), Positives = 75/263 (28%), Gaps = 23/263 (8%)
Query: 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR 699
L+ + DG ++ + P P + + G S +
Sbjct: 13 RLVWVESFDGSRVPTYVLESGR----APTPGPTVVLVHGG--------PFAEDSDSWDTF 60
Query: 700 IGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPS 759
L A ++ + + + R S
Sbjct: 61 A----ASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS 116
Query: 760 KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG-----AYNRTLTPFGFQNEDRTLWEAT 814
++ + G+SYG +MT L P LF G+A + ++ +
Sbjct: 117 ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSR 176
Query: 815 STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874
SP +++K+P+ L+H + D+ T R L G I+P
Sbjct: 177 EIMRSRSPINHVDRIKEPLALIHPQNDSR--TPLKPLLRLMGELLARGKTFEAHIIPDAG 234
Query: 875 HGYAARESIMHVLWETDRWLQKY 897
H E + +L +L
Sbjct: 235 HAINTMEDAVKILLPAVFFLATQ 257
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 65.1 bits (158), Expect = 7e-12
Identities = 20/130 (15%), Positives = 36/130 (27%), Gaps = 12/130 (9%)
Query: 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN--------RTLTPFGFQNEDRT 809
P+ ++V G + G +M A L +F G T + T
Sbjct: 10 PNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITT 69
Query: 810 LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG--HGALCRL 867
++ AN ++ I + G D ++ L + A
Sbjct: 70 PTANMKSWSGNQIASVANLGQRKIYMWTGSSDTT--VGPNVMNQLKAQLGNFDNSANVSY 127
Query: 868 VILPFESHGY 877
V H +
Sbjct: 128 VTTTGAVHTF 137
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Score = 61.2 bits (147), Expect = 9e-11
Identities = 36/270 (13%), Positives = 65/270 (24%), Gaps = 30/270 (11%)
Query: 625 TDFPHPYPQLASLQKELIKYQ-RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKS 683
+ + + Q I Y A +YLPPGY K L+ +
Sbjct: 8 SGYDQVRNGVPRGQVVNISYFSTATNSTRPARVYLPPGYSKDK--KYSVLYLLHGIGGSE 65
Query: 684 KDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACA 743
D + + P I +G E + L+
Sbjct: 66 NDWFEGGGRANVIADN-LIAEGKIKPLIIVTPNTNAAGPGIADGYENFTKDLLNSLIPYI 124
Query: 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGF 803
E+ A+ G S G + N+ F S A
Sbjct: 125 ES-----NYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAP--------- 170
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA 863
+ + +A + K + + G D+ G R +
Sbjct: 171 -------NTYPNERLFPDGGKAAREKLKLLFIACGTNDSLIG----FGQRVHEYCVANNI 219
Query: 864 LCRLVILPFESHGYAA-RESIMHVLWETDR 892
++ H + + + + L D
Sbjct: 220 NHVYWLIQGGGHDFNVWKPGLWNFLQMADE 249
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Score = 60.3 bits (145), Expect = 2e-10
Identities = 32/273 (11%), Positives = 62/273 (22%), Gaps = 38/273 (13%)
Query: 623 QITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFK 682
P + + E +K R+ ++ P +
Sbjct: 6 DCPQAPEIPAKEIIWKSERLKNSRR------VWIFTTGDVTA---EERPLAVLLDGEFWA 56
Query: 683 SKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVAC 742
V S ++ +L + N F +
Sbjct: 57 QSMPVWPVLTSLTHRQQLPPAVY---------VLIDAIDTTHRAHELPCNADFWLAVQQE 107
Query: 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 802
V+ + + V G S+G H P F C +++SG+Y
Sbjct: 108 LLPLVKVIAPFSDR-ADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRG-- 164
Query: 803 FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
+ +E + I+L G + + + + L
Sbjct: 165 --------GQQEGVLLEKLKAGEVSAEGLRIVLEAGIREPM---IMRANQALYAQLHPIK 213
Query: 863 ALCRLVILPFESHGYAA-RESIMHVLWETDRWL 894
+ H R +M L L
Sbjct: 214 ESIFWRQVD-GGHDALCWRGGLMQGL----IDL 241
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 61.3 bits (147), Expect = 2e-10
Identities = 25/205 (12%), Positives = 53/205 (25%), Gaps = 23/205 (11%)
Query: 626 DFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKD 685
F K + +DGV+L + LP G P + P
Sbjct: 12 PFVAADAS-NDYIKREVMIPMRDGVKLHTVIVLPKG-----AKNAPIVLTRTP----YDA 61
Query: 686 AAGQVRGSPNEFPRIGSTSVLLWLARGFAIL-------GGPTTPIIGEGDEEA-NDRFVE 737
+ R + + S +++ G+ + G + +
Sbjct: 62 SGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEV 121
Query: 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG----- 792
A ++ +V+ K+ + G SY F L + + S
Sbjct: 122 DHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGW 181
Query: 793 AYNRTLTPFGFQNEDRTLWEATSTY 817
+ F+ + + +
Sbjct: 182 MGDDWFNYGAFRQVNFDYFTGQLSK 206
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 61.3 bits (147), Expect = 2e-10
Identities = 22/175 (12%), Positives = 44/175 (25%), Gaps = 16/175 (9%)
Query: 630 PYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQ 689
P Q K + +DGV+L + +P P L P +
Sbjct: 19 PTDQQRDYIKREVMVPMRDGVKLYTVIVIPKN-----ARNAPILLTRTP---YNAKGRAN 70
Query: 690 VRGSPNEFPRIGSTSVLLWLARGFAIL--------GGPTTPIIGEGDEEANDRFVEQLVA 741
+ + +++ G+ + G ++ +
Sbjct: 71 RVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETT 130
Query: 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796
A V+ +V ++ + G SY F L S +
Sbjct: 131 DAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDG 185
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (143), Expect = 5e-10
Identities = 40/256 (15%), Positives = 80/256 (31%), Gaps = 29/256 (11%)
Query: 649 GVQLSATLYLPPGY---DPSKDGPLPCLFW------------SYPGEFKSKDAAGQVRGS 693
++ +YLP Y D ++ +P +F+ D G
Sbjct: 25 KTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVF 84
Query: 694 PNEFPRIGSTSVLLWLARGFAILGG---PTTPIIGEGDEEANDRFVEQLVACAEAAVEEV 750
P+ PR + + F G T + D ++L ++ +
Sbjct: 85 PDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKN 144
Query: 751 VRRGVAHPSKIAVGGHS---YGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED 807
+ +A+ GHS YGA L ++ + A + N + P+G +
Sbjct: 145 GDVKLDFLDNVAITGHSMGGYGAICGY-LKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFK 203
Query: 808 RTLWEATSTYVEMSPFMSANKLKKP----ILLVHGEEDNNSGTLTMQSDRFFNALK--GH 861
L E + + P + ++ IL+ G+ D ++ + A+K
Sbjct: 204 GYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLEEH-LKPELLLEAVKATSW 262
Query: 862 GALCRLVILPFESHGY 877
+ + H Y
Sbjct: 263 QDYVEIKKVHGFDHSY 278
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Score = 58.4 bits (140), Expect = 2e-09
Identities = 36/294 (12%), Positives = 71/294 (24%), Gaps = 63/294 (21%)
Query: 663 DPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAIL----- 716
+ + V +P F + S+ + RGFA +
Sbjct: 86 EEKTSHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGV 145
Query: 717 --GGPTTPIIGEGDEEANDRF--VEQLVACAEAAVEEVVRRGVAHP---SKIAVGGHSYG 769
++ ++ L A A + K+A+ G SY
Sbjct: 146 GTRSSDGFQTSGDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYL 205
Query: 770 AFMTANLLAHAPHLFCCGIARSGAYNRT-------------------------------- 797
M +A +G +
Sbjct: 206 GTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNL 265
Query: 798 --------------LTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNN 843
DR + + + + ++ +K+K +L+VHG +D N
Sbjct: 266 DGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWN 325
Query: 844 SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
Q+ F+ AL G + +H Y + + +
Sbjct: 326 VT--PEQAYNFWKALP-EGHAKHAFLHR-GAHIYMNSWQSIDFSETINAYFVAK 375
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 52.3 bits (124), Expect = 1e-07
Identities = 42/252 (16%), Positives = 68/252 (26%), Gaps = 41/252 (16%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
+ +P G GP P + + E ++ + L L RG A
Sbjct: 122 VRIPEG-----PGPHPAVIMLGGL-----------ESTKEESFQMEN----LVLDRGMAT 161
Query: 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775
P GE E A V+ + + I V G S G
Sbjct: 162 AT-FDGPGQGEMFEYKRIA--GDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALK 218
Query: 776 LLAHAPHLFCCGIARSGAYN---------RTLTPFGFQNEDRTLWEA-TSTYVEMSPFMS 825
A P I+ G + T + + ++ TL EA + +
Sbjct: 219 SAACEPR-LAACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDV 277
Query: 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH 885
+++ P ++HG D D + LV+ H
Sbjct: 278 LSQIACPTYILHGVHDE---VPLSFVDTVLELVPAEHL--NLVVEKDGDHCCHNLGIRPR 332
Query: 886 VLWETDRWLQKY 897
+ E WL
Sbjct: 333 L--EMADWLYDV 342
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 48.0 bits (113), Expect = 3e-06
Identities = 36/258 (13%), Positives = 71/258 (27%), Gaps = 34/258 (13%)
Query: 660 PGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSP-NEFPRIGSTSVLLWLARGFAILGG 718
S P L+ G D +G +P E+ SV++ + +
Sbjct: 24 KVQFQSGGANSPALYLLD-GLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSD 82
Query: 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA 778
P G+ + + P+ AV G S A L
Sbjct: 83 WYQPACGKAGCQTYK----WETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAI 138
Query: 779 HAPHLFCCGIARSGAYNRTLTP------------FGFQNEDRTLWEATSTYVEMSPFMSA 826
+ P F A SG + + G++ D + + P ++
Sbjct: 139 YHPQQFVYAGAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNV 198
Query: 827 NKLKK---PILLVHGEEDNNS------------GTLTMQSDRFFNALKGHGALCRLVILP 871
KL + + G + G + + +F +A G + P
Sbjct: 199 GKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFP 258
Query: 872 FE-SHGYAARESIMHVLW 888
+H + + ++ +
Sbjct: 259 DSGTHSWEYWGAQLNAMK 276
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.4 bits (101), Expect = 7e-05
Identities = 20/167 (11%), Positives = 41/167 (24%), Gaps = 15/167 (8%)
Query: 691 RGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEV 750
P+ + + + + LA + P D + + + +
Sbjct: 37 NAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMYTNWEQDGSKQWDTFLSAELPDWL 96
Query: 751 VRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP---------- 800
P A G + G + L A P F + SG + T
Sbjct: 97 AANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAGMQ 156
Query: 801 --FGFQNEDRTLWEATSTYVEMSPFMSANKLKK---PILLVHGEEDN 842
G + P++ A+ L + + +
Sbjct: 157 QFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPG 203
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 20/150 (13%)
Query: 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVL 706
+DGV+L+ LY P DGP+P L P ST+ L
Sbjct: 13 RDGVRLAVDLYRPDA-----DGPVPVLLVRNPY-----------DKFDVFAWSTQSTNWL 56
Query: 707 LWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGH 766
++ G+A++ G E A AE + ++ + + + G
Sbjct: 57 EFVRDGYAVV---IQDTRGLFASEGEFVPHVDDEADAEDTLSWILEQAWCDG-NVGMFGV 112
Query: 767 SYGAFMTANLLAHAPHLFCCGIARSGAYNR 796
SY + +
Sbjct: 113 SYLGVTQWQAAVSGVGGLKAIAPSMASADL 142
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 41.6 bits (96), Expect = 3e-04
Identities = 40/266 (15%), Positives = 64/266 (24%), Gaps = 51/266 (19%)
Query: 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR 711
+ +Y P L + + G F ST V
Sbjct: 68 IRVRVYQQ-------KPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVV------ 114
Query: 712 GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAF 771
+ E V + E + PSKI VGG S G
Sbjct: 115 ---------SVDYRLAPEHKFPAAVYDCYDATKWVAENAEELRID-PSKIFVGGDSAGGN 164
Query: 772 MTANLLAHAPHLFCCGIARS---------------------GAYNRTLTPFGFQNEDRTL 810
+ A + A I G + + +E
Sbjct: 165 LAAAVSIMARDSGEDFIKHQILIYPVVNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFS 224
Query: 811 WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 870
E S + + P L++ E D L + + F L+ G +V
Sbjct: 225 REEDKFNPLASVIFADLENLPPALIITAEYD----PLRDEGEVFGQMLRRAGVEASIVRY 280
Query: 871 PFESHGYAARESIMHVLWETDRWLQK 896
HG+ + VL + +
Sbjct: 281 RGVLHGFI---NYYPVLKAARDAINQ 303
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Score = 39.6 bits (91), Expect = 0.001
Identities = 33/252 (13%), Positives = 59/252 (23%), Gaps = 55/252 (21%)
Query: 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCL-----FWSYPGEFKSK----DAAGQV 690
E I Q DG A + P P P + + + G
Sbjct: 4 EGISIQSYDGHTFGALVGSPAK------APAPVIVIAQEIFGVNAFMRETVSWLVDQGYA 57
Query: 691 RGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEV 750
P+ + R + L + + +E V EAA+
Sbjct: 58 AVCPDLYARQAPGTA----------LDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYA 107
Query: 751 VRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTL 810
+ + K+ + G+ G + + A
Sbjct: 108 RHQPYS-NGKVGLVGYCLGGALAFLVAAKGYVDRAV------------------------ 142
Query: 811 WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 870
++K P L G +D+ S + G L ++
Sbjct: 143 --GYYGVGLEKQLNKVPEVKHPALFHMGGQDHFV---PAPSRQLITEGFGANPLLQVHWY 197
Query: 871 PFESHGYAARES 882
H +A S
Sbjct: 198 EEAGHSFARTSS 209
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.5 bits (91), Expect = 0.001
Identities = 20/156 (12%), Positives = 36/156 (23%), Gaps = 27/156 (17%)
Query: 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-- 800
+ P+ A G S L A+ P F + SG N + +
Sbjct: 98 TREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWP 157
Query: 801 ----------FGFQNEDRTLWEATSTYVEMSPFMSANKLKK---PILLVHGEEDNNS--- 844
G+ + + P + +L I + G +
Sbjct: 158 TLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGG 217
Query: 845 ---------GTLTMQSDRFFNALKGHGALCRLVILP 871
G + F + G + P
Sbjct: 218 DNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFP 253
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Score = 38.8 bits (89), Expect = 0.002
Identities = 30/265 (11%), Positives = 54/265 (20%), Gaps = 54/265 (20%)
Query: 647 KDGVQLSATLYLPPGYDPSKDGPLPCL--FWSYPGEFKSKDAAGQVRGSPNEFPRIGSTS 704
+G +L P P K+ + F F G
Sbjct: 12 NNGQELHVWETPPKENVPFKNNTILIASGFARRMDHFAGLAEYLSTNG----------FH 61
Query: 705 VLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVG 764
V + + G ++ G DE L + I +
Sbjct: 62 VFRYDSLHH---VGLSS---GSIDEFTMTTGKNSLCTVYHWLQTK-------GTQNIGLI 108
Query: 765 GHSYGAFMTANLLAHAPHL--FCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYV---- 818
S A A + L + + GF + E +
Sbjct: 109 AASLSA-RVAYEVISDLELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGH 167
Query: 819 ------------------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860
S P++ D+ + ++
Sbjct: 168 KLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDW--VKQEEVYDMLAHIR- 224
Query: 861 HGALCRLVILPFESHGYAARESIMH 885
C+L L SH ++
Sbjct: 225 -TGHCKLYSLLGSSHDLGENLVVLR 248
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 38.6 bits (88), Expect = 0.003
Identities = 29/234 (12%), Positives = 62/234 (26%), Gaps = 23/234 (9%)
Query: 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDN------FVWV 252
G + F D +W D+ +G R + + + NA F +
Sbjct: 11 HGDRIIFVCCDD----------LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVM 60
Query: 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYA 312
S+L + G+ + + + + D + + + +
Sbjct: 61 RGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSS 120
Query: 313 TTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWT 372
T L V DG T + + + I ++ P+ G +
Sbjct: 121 MTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVN 180
Query: 373 TDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426
+ + + + V G R ++ DG D +
Sbjct: 181 SGAFK-------KIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLR 227
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.9 bits (86), Expect = 0.003
Identities = 12/137 (8%), Positives = 32/137 (23%), Gaps = 2/137 (1%)
Query: 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800
A + + G + ++
Sbjct: 113 VGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFT 172
Query: 801 FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860
+ ++E + V + ++ + LVH D Q++ + L+
Sbjct: 173 RLAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDEL--LTLRQTNCLISCLQD 230
Query: 861 HGALCRLVILPFESHGY 877
+ +L + H
Sbjct: 231 YQLSFKLYLDDLGLHND 247
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 954 | |||
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.96 | |
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 99.96 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.95 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.91 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.89 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.89 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.89 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.89 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.87 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.86 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.86 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.86 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.85 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.84 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.84 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.83 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.82 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.81 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.81 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.81 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.81 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.8 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.8 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.8 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.79 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.78 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.78 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.78 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.77 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.77 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.76 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.76 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.76 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.73 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.71 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.7 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.7 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.68 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.68 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.68 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.68 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.68 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.67 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.66 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.65 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.65 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.64 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.63 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.63 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.61 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.61 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.6 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.6 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.6 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.6 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.59 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.59 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.58 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.58 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.58 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.57 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.57 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.56 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.56 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.56 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.55 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.55 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.55 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.54 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.53 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.52 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.51 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 99.51 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.51 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.51 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.5 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.5 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.49 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.49 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.49 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.49 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.48 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.47 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.47 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.46 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.46 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.46 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.45 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.44 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.43 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.43 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.4 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.4 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.36 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.36 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.35 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.34 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.32 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.31 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.31 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.31 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 99.31 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.27 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.26 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.22 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.22 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.2 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.16 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.1 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 99.05 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 98.99 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 98.97 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.9 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.87 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.87 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 98.83 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.82 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 98.79 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.79 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.75 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.75 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 98.74 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.73 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 98.72 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.67 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.61 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 98.6 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.59 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 98.54 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.53 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.53 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.51 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.5 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.5 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 98.5 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.49 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.49 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.49 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.48 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.47 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.46 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.4 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.4 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.4 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.39 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.35 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.34 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.33 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.31 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.29 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.26 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.24 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.23 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 98.23 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 98.19 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 98.19 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.13 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.12 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 97.96 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.92 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.86 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.85 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.84 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.67 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 97.65 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.51 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 97.43 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.3 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 97.24 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.19 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.07 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 96.99 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 96.74 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.69 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 95.3 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 94.29 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 94.15 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 94.13 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 93.88 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 93.74 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.1 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 90.22 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 89.23 | |
| d1lgya_ | 265 | Triacylglycerol lipase {Rhizopus niveus [TaxId: 48 | 89.23 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 88.24 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 87.69 | |
| d1uwca_ | 261 | Feruloyl esterase A {Aspergillus niger [TaxId: 506 | 87.65 | |
| d1tiaa_ | 271 | Triacylglycerol lipase {Penicillium camembertii [T | 87.65 | |
| d1tiba_ | 269 | Triacylglycerol lipase {Thermomyces lanuginosus, f | 87.27 | |
| d3tgla_ | 265 | Triacylglycerol lipase {Rhizomucor miehei [TaxId: | 86.91 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 86.1 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 85.02 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 82.64 |
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.96 E-value=3.3e-29 Score=262.69 Aligned_cols=249 Identities=21% Similarity=0.262 Sum_probs=197.0
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
++.|.+.|...+|.++.+.|++|++|+++|| +|+||++|||+.... .. ..+. .......++++||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~lP~~~~~~kk--~P~iv~~HGGp~~~~------~~--~~~~--~~~~~~~~a~~g~~V~ 68 (258)
T d2bgra2 1 MPSKKLDFIILNETKFWYQMILPPHFDKSKK--YPLLLDVYAGPCSQK------AD--TVFR--LNWATYLASTENIIVA 68 (258)
T ss_dssp CCEEEEEEEEETTEEEEEEEEECTTCCTTSC--EEEEEECCCCTTCCC------CC--CCCC--CSHHHHHHHTTCCEEE
T ss_pred CCceeEEEEEeCCcEEEEEEEECCCcCCCCC--eeEEEEEcCCCCccc------CC--CccC--cCHHHHHHhcCCcEEE
Confidence 4678999999999999999999999987664 999999999753211 11 1111 1123445678999999
Q ss_pred EcCCCCCCCCCCccc---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 717 GGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
.+++++..++|..+. ...+....+.|+.++++++.++..+|+++|+++|+|+||.+++.++..+|+++++++..++.
T Consensus 69 ~~d~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~ 148 (258)
T d2bgra2 69 SFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPV 148 (258)
T ss_dssp EECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCC
T ss_pred eecccccCCcchHHHHhhhhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeecc
Confidence 988887766664432 23345567888999999999999999999999999999999999999999999999988876
Q ss_pred CCCCCCCCCCc---cccchhhhcHHHHHhcCcccccCCCC-CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEE
Q 002194 794 YNRTLTPFGFQ---NEDRTLWEATSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869 (954)
Q Consensus 794 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~ 869 (954)
........... ......+...+.+...+++..+.+++ +|+|++||++|.+|| +.++.+++++|+..|+++++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~hG~~D~~Vp--~~~s~~~~~~l~~~g~~~~~~~ 226 (258)
T d2bgra2 149 SRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVH--FQQSAQISKALVDVGVDFQAMW 226 (258)
T ss_dssp CCGGGSBHHHHHHHHCCCSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSC--THHHHHHHHHHHHHTCCCEEEE
T ss_pred cccccccccccchhcccccchhhHHHhhcccccccccccccCChheeeecCCCccc--HHHHHHHHHHHHHCCCCEEEEE
Confidence 54322211000 01122344566777889998888875 799999999999999 9999999999999999999999
Q ss_pred eCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 870 LPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 870 ~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
||+++|++...+....+++.+.+||+++|.
T Consensus 227 ~~g~~H~~~~~~~~~~~~~~i~~fl~~~l~ 256 (258)
T d2bgra2 227 YTDEDHGIASSTAHQHIYTHMSHFIKQCFS 256 (258)
T ss_dssp ETTCCTTCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred ECCCCCCCCCCccHHHHHHHHHHHHHHHhc
Confidence 999999988777788899999999999984
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.96 E-value=6.3e-29 Score=260.71 Aligned_cols=242 Identities=19% Similarity=0.231 Sum_probs=196.5
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
...+.|+|++.||.+|++++|.|++. +++.|+||++|||++.... ..| ...+..|+++||+|+
T Consensus 10 ~~~~~v~~~s~dG~~i~~~l~~p~~~----~~~~Pviv~~HGG~~~~~~---------~~~----~~~~~~la~~G~~v~ 72 (260)
T d2hu7a2 10 AGSRLVWVESFDGSRVPTYVLESGRA----PTPGPTVVLVHGGPFAEDS---------DSW----DTFAASLAAAGFHVV 72 (260)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTS----CSSEEEEEEECSSSSCCCC---------SSC----CHHHHHHHHHTCEEE
T ss_pred CceEEEEEECCCCCEEEEEEEeCCCC----CCCceEEEEECCCCccCCC---------ccc----cHHHHHHHhhccccc
Confidence 45788999999999999999999752 3458999999997643211 112 245778999999999
Q ss_pred EcCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 717 GGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
.+++++..|+|.+... ..+....++|+.++++|+.++. ++++++|+|+|+||++++.+++.+|+.++++++.+|+
T Consensus 73 ~~d~r~~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~ 150 (260)
T d2hu7a2 73 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASV 150 (260)
T ss_dssp EECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCC
T ss_pred cceeeeccccccccccccccccchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccc
Confidence 9888877777766432 2334567899999999999875 5679999999999999999999999999999999998
Q ss_pred CCCCCC----CCCCc-cccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002194 794 YNRTLT----PFGFQ-NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (954)
Q Consensus 794 ~~~~~~----~~~~~-~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (954)
.+.... ...+. ......+.+.+.+...+|+.+++++++|+||+||++|.+|| +.++.+++++|+..|++++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~liihG~~D~~vp--~~~~~~~~~~l~~~~~~~~~~ 228 (260)
T d2hu7a2 151 VDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTP--LKPLLRLMGELLARGKTFEAH 228 (260)
T ss_dssp CCHHHHHHTCCHHHHHHHHHHHCSCHHHHHHTCGGGCGGGCCSCEEEEEETTCSSSC--SHHHHHHHHHHHHTTCCEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccchhhcccccCCCceeeecccCceec--HHHHHHHHHHHHHCCCCeEEE
Confidence 663210 00000 01122234667788899999999999999999999999999 999999999999999999999
Q ss_pred EeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 869 ILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 869 ~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
+||+++|++...++..++++.+++||.+|++
T Consensus 229 ~~~g~~H~~~~~e~~~~~~~~~~~fl~~hl~ 259 (260)
T d2hu7a2 229 IIPDAGHAINTMEDAVKILLPAVFFLATQRE 259 (260)
T ss_dssp EETTCCSSCCBHHHHHHHHHHHHHHHHHHHH
T ss_pred EECcCCCCCCChHhHHHHHHHHHHHHHHHhc
Confidence 9999999998888888999999999999985
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=5.3e-29 Score=261.00 Aligned_cols=239 Identities=16% Similarity=0.164 Sum_probs=181.3
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.||.+|+++|++|+++++++| +|+||++||||..... .+.|.. ......|+++||+|++++++++.++
T Consensus 10 ~dg~~l~~~l~~P~~~~~~~k--~Pviv~~HGGp~~~~~--------~~~~~~--~~~~~~la~~G~~vv~~d~rGs~~~ 77 (258)
T d1xfda2 10 IDDYNLPMQILKPATFTDTTH--YPLLLVVDGTPGSQSV--------AEKFEV--SWETVMVSSHGAVVVKCDGRGSGFQ 77 (258)
T ss_dssp ETTEEECCBEEBCSSCCSSSC--EEEEEECCCCTTCCCC--------CCCCCC--SHHHHHHHTTCCEEECCCCTTCSSS
T ss_pred eCCeEEEEEEEECCCcCCCCc--eeEEEEEcCCccccCc--------CCCcCc--chHHHHHhcCCcEEEEecccccccc
Confidence 599999999999999987764 9999999998532111 112211 1235578899999999998887777
Q ss_pred CCccc---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC----cccEEEEeccCCCCCCC
Q 002194 727 GDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGIARSGAYNRTLT 799 (954)
Q Consensus 727 G~~~~---~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~~~~~~~~~ 799 (954)
|..+. ...+....+.|+.++++++.+++.+|++||+++|+|+||++|++++...++ .+++.+..+++......
T Consensus 78 g~~~~~~~~~~~g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T d1xfda2 78 GTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLY 157 (258)
T ss_dssp HHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSS
T ss_pred chhHhhhhhccchhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeecc
Confidence 65432 233445678999999999999999999999999999999999998877653 57777777776543221
Q ss_pred CCCCc-cccchhhhcHHHHHhcCcccccCCC-CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 002194 800 PFGFQ-NEDRTLWEATSTYVEMSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (954)
Q Consensus 800 ~~~~~-~~~~~~~~~~~~~~~~sp~~~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (954)
..... ........+.+.+...++...+.++ ++|+|++||+.|.+|| +.++.+++++|++.|+++++++||+++|.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~p~Li~hG~~D~~vp--~~~s~~~~~~l~~~~~~~~~~~~p~~~H~~ 235 (258)
T d1xfda2 158 ASAFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIH--FQHTAELITQLIRGKANYSLQIYPDESHYF 235 (258)
T ss_dssp BHHHHHHHHCCCSSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSC--HHHHHHHHHHHHHTTCCCEEEEETTCCSSC
T ss_pred ccccccccccccccchHHhhccchhhhhhhhhcccccccccCCCCCcC--HHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Confidence 10000 0001111223344556677777775 6799999999999999 999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHhcc
Q 002194 878 AARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 878 ~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
.......++++.+++||+++|+
T Consensus 236 ~~~~~~~~~~~~~~~f~~~~~~ 257 (258)
T d1xfda2 236 TSSSLKQHLYRSIINFFVECFR 257 (258)
T ss_dssp CCHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCcCHHHHHHHHHHHHHHhhC
Confidence 7777777888999999999875
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.91 E-value=2.9e-23 Score=219.66 Aligned_cols=249 Identities=15% Similarity=0.183 Sum_probs=178.8
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
+++|+|+|++.||.+|+++|++|+++++++ ++|+||++|||++...... ........++..++.++
T Consensus 5 y~~e~v~~~s~DG~~i~~~l~~P~~~~~~~--~~P~iv~~HGG~~~~~~~~------------~~~~~~~~~~~~~~~~~ 70 (280)
T d1qfma2 5 YQTVQIFYPSKDGTKIPMFIVHKKGIKLDG--SHPAFLYGYGGFNISITPN------------YSVSRLIFVRHMGGVLA 70 (280)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTCCCSS--CSCEEEECCCCTTCCCCCC------------CCHHHHHHHHHHCCEEE
T ss_pred CEEEEEEEECCCCCEEEEEEEEcCCCCCCC--CeEEEEEECCCCcccCCCC------------cchhhhhhhcccceeee
Confidence 457889999999999999999999987655 5999999999875433211 11233445566788888
Q ss_pred EcCCCCCCCCCCccc---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 717 GGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
...++....++.... ..........+...++.+...+...+...++++|+|.||.++..++...++.+++++...+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~ 150 (280)
T d1qfma2 71 VANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGV 150 (280)
T ss_dssp EECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCC
T ss_pred ccccccccccchhhhhcccccccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccc
Confidence 766554443322211 12334556677777788888888888899999999999999999999999999999999988
Q ss_pred CCCCCCCCC-Ccc------ccchhhhcHHHHHhcCccc------ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHh
Q 002194 794 YNRTLTPFG-FQN------EDRTLWEATSTYVEMSPFM------SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (954)
Q Consensus 794 ~~~~~~~~~-~~~------~~~~~~~~~~~~~~~sp~~------~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~ 860 (954)
.+....... ... .....+.....+...+|.. .+.....|+||+||++|.+|| +.++++++++|+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~pP~LiihG~~D~~Vp--~~~s~~l~~aL~~ 228 (280)
T d1qfma2 151 MDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVV--PLHSLKFIATLQY 228 (280)
T ss_dssp CCTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSC--THHHHHHHHHHHH
T ss_pred cchhhhccccccccceecccCCCcccccccccccccccccchhhhcccCCCceEEeecccCCCCC--HHHHHHHHHHHHH
Confidence 775332100 000 0111222233334444443 344444589999999999999 9999999999964
Q ss_pred -------CCCcEEEEEeCCCCCcCCCccc-HHHHHHHHHHHHHHhcccC
Q 002194 861 -------HGALCRLVILPFESHGYAARES-IMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 861 -------~g~~~~~~~~~~~~H~~~~~~~-~~~~~~~i~~fl~~~l~~~ 901 (954)
.|+++++++||++||++....+ ..+.+.++++||++||+..
T Consensus 229 ~g~~~~~~~~~~~l~~~~~~gHgf~~~~~~~~~~~~~~~~fl~k~L~~~ 277 (280)
T d1qfma2 229 IVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNID 277 (280)
T ss_dssp HTTTSTTCCSCEEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhhcCCCcEEEEEeCcCCCCCCCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 4789999999999999865533 3466678999999999764
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.89 E-value=1.2e-22 Score=222.20 Aligned_cols=235 Identities=19% Similarity=0.186 Sum_probs=169.2
Q ss_pred cCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCc
Q 002194 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (954)
Q Consensus 634 ~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (954)
+.....|.++++. +|..|+++++.|++ .++.|+||++||... ...........|+++||
T Consensus 101 ~~~~~~e~v~ip~-dg~~l~g~l~~P~~-----~~~~P~Vi~~hG~~~---------------~~e~~~~~~~~l~~~G~ 159 (360)
T d2jbwa1 101 LLSPPAERHELVV-DGIPMPVYVRIPEG-----PGPHPAVIMLGGLES---------------TKEESFQMENLVLDRGM 159 (360)
T ss_dssp GSSSCEEEEEEEE-TTEEEEEEEECCSS-----SCCEEEEEEECCSSC---------------CTTTTHHHHHHHHHTTC
T ss_pred hCCCCeEEeecCc-CCcccceEEEecCC-----CCCceEEEEeCCCCc---------------cHHHHHHHHHHHHhcCC
Confidence 3345688899985 79999999999975 346999999999521 11112245678899999
Q ss_pred EEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 714 ~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
+|+. ++.+|+|.+............++..+++++..+..+|++||+|+|+||||++|+.+++..| +++++|+.+|+
T Consensus 160 ~vl~---~D~~G~G~s~~~~~~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~p-ri~a~V~~~~~ 235 (360)
T d2jbwa1 160 ATAT---FDGPGQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP-RLAACISWGGF 235 (360)
T ss_dssp EEEE---ECCTTSGGGTTTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCC
T ss_pred EEEE---EccccccccCccccccccHHHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCC-CcceEEEEccc
Confidence 9999 5556777664432222223345667889999999999999999999999999999999985 69999999998
Q ss_pred CCCCCCCCCCccccchhh---------h--cHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC
Q 002194 794 YNRTLTPFGFQNEDRTLW---------E--ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862 (954)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~---------~--~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g 862 (954)
.+......... .....| + ........+....+.++++|+||+||++|. || +.++.++++++..
T Consensus 236 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-vp--~~~~~~l~~~~~~-- 309 (360)
T d2jbwa1 236 SDLDYWDLETP-LTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VP--LSFVDTVLELVPA-- 309 (360)
T ss_dssp SCSTTGGGSCH-HHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SC--THHHHHHHHHSCG--
T ss_pred ccHHHHhhhhh-hhhHHHHHhccCCchHHHHHHHHhhcchhhhHhhCCCCEEEEEeCCCC-cC--HHHHHHHHHhcCC--
Confidence 77432211100 000000 0 112233445666788999999999999997 67 8999999988754
Q ss_pred CcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcccC
Q 002194 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 863 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (954)
.+++++++++++|... .........|.+||.++|...
T Consensus 310 ~~~~l~~~~~g~H~~~--~~~~~~~~~i~dWl~~~L~~g 346 (360)
T d2jbwa1 310 EHLNLVVEKDGDHCCH--NLGIRPRLEMADWLYDVLVAG 346 (360)
T ss_dssp GGEEEEEETTCCGGGG--GGTTHHHHHHHHHHHHHHTSS
T ss_pred CCeEEEEECCCCcCCC--cChHHHHHHHHHHHHHHhccC
Confidence 3578889999999653 333456778999999998643
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=9.8e-23 Score=220.49 Aligned_cols=236 Identities=16% Similarity=0.092 Sum_probs=168.7
Q ss_pred cCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCc
Q 002194 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (954)
Q Consensus 634 ~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (954)
...++.+.++|++.||.+|++++++|++. .++.|+||++||++.... + ......|+++||
T Consensus 50 ~~~~~~~~v~~~s~dG~~l~~~l~~P~~~----~~~~P~Vv~~hG~~~~~~------------~----~~~~~~~a~~G~ 109 (322)
T d1vlqa_ 50 LKTVEAYDVTFSGYRGQRIKGWLLVPKLE----EEKLPCVVQYIGYNGGRG------------F----PHDWLFWPSMGY 109 (322)
T ss_dssp CSSEEEEEEEEECGGGCEEEEEEEEECCS----CSSEEEEEECCCTTCCCC------------C----GGGGCHHHHTTC
T ss_pred CCCeEEEEEEEECCCCcEEEEEEEeccCC----CCCccEEEEecCCCCCcC------------c----HHHHHHHHhCCC
Confidence 34456788999999999999999999863 235999999999743211 1 122346899999
Q ss_pred EEEEcCCCCCCCCCCcc------------------------cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChH
Q 002194 714 AILGGPTTPIIGEGDEE------------------------ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYG 769 (954)
Q Consensus 714 ~V~~~~~~~~~G~G~~~------------------------~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~G 769 (954)
+|+.+++++..+.+... .........+.|+.++++++..++.+|++|++++|+|+|
T Consensus 110 ~v~~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~G 189 (322)
T d1vlqa_ 110 ICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQG 189 (322)
T ss_dssp EEEEECCTTCCCSSSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHH
T ss_pred EEEEeeccccCCCCCCccccccccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccc
Confidence 99996665433221110 011234456889999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcccEEEEeccCCCCCCC-----CCCCcccc--------chhhhcHHHHHhcCcccccCCCCCCEEEE
Q 002194 770 AFMTANLLAHAPHLFCCGIARSGAYNRTLT-----PFGFQNED--------RTLWEATSTYVEMSPFMSANKLKKPILLV 836 (954)
Q Consensus 770 G~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-----~~~~~~~~--------~~~~~~~~~~~~~sp~~~~~~~~~P~Lii 836 (954)
|++++.+++.. .+++++|+.++....... ........ .......+.+..++|..++.++++|+||+
T Consensus 190 G~~a~~~~~~~-~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~i~~P~Lv~ 268 (322)
T d1vlqa_ 190 GGIALAVSALS-KKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFS 268 (322)
T ss_dssp HHHHHHHHHHC-SSCCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEE
T ss_pred hHHHHHHHhcC-CCccEEEEeCCccccHHHHHhhccccchhhHHhhhhcCcchhhhHHHHhhhhhHHHHHhcCCCCEEEE
Confidence 99999999988 468999988875442110 00000000 00011123345568999999999999999
Q ss_pred EeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 837 HGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 837 ~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
||++|.+|| ++++.++++++ +.++++++||+++|.... ....+..++||+++|+
T Consensus 269 ~G~~D~~vp--~~~~~~~~~~~---~~~~~l~~~p~~~H~~~~----~~~~~~~~~~l~~~l~ 322 (322)
T d1vlqa_ 269 VGLMDNICP--PSTVFAAYNYY---AGPKEIRIYPYNNHEGGG----SFQAVEQVKFLKKLFE 322 (322)
T ss_dssp EETTCSSSC--HHHHHHHHHHC---CSSEEEEEETTCCTTTTH----HHHHHHHHHHHHHHHC
T ss_pred EeCCCCCcC--HHHHHHHHHHC---CCCeEEEEECCCCCCCcc----ccCHHHHHHHHHHHhC
Confidence 999999999 88887777665 567999999999997632 2334556899999873
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.89 E-value=1.6e-22 Score=221.54 Aligned_cols=339 Identities=14% Similarity=0.084 Sum_probs=213.3
Q ss_pred CCCCceecC-CCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCC
Q 002194 110 PLPALSFSP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (954)
Q Consensus 110 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~ 188 (954)
......||| ||+++||.+.. +|++|++.+ +..+++. ++
T Consensus 4 ~~~~~~fSP~dG~~~a~~~~g----------------------------------~v~v~d~~~----~~~~~~~---~~ 42 (360)
T d1k32a3 4 SKFAEDFSPLDGDLIAFVSRG----------------------------------QAFIQDVSG----TYVLKVP---EP 42 (360)
T ss_dssp GGGEEEEEECGGGCEEEEETT----------------------------------EEEEECTTS----SBEEECS---CC
T ss_pred hhhcccccCCCCCEEEEEECC----------------------------------eEEEEECCC----CcEEEcc---CC
Confidence 344578999 99999999874 899999854 5666653 34
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+..++|||||++|+|+... +...|+++|+++++.++++..... +..++|+|||+.|++..
T Consensus 43 ~~v~~~~~spDg~~l~~~~~~-------~g~~v~v~d~~~~~~~~~~~~~~~-----v~~~~~spdg~~l~~~~------ 104 (360)
T d1k32a3 43 LRIRYVRRGGDTKVAFIHGTR-------EGDFLGIYDYRTGKAEKFEENLGN-----VFAMGVDRNGKFAVVAN------ 104 (360)
T ss_dssp SCEEEEEECSSSEEEEEEEET-------TEEEEEEEETTTCCEEECCCCCCS-----EEEEEECTTSSEEEEEE------
T ss_pred CCEEEEEECCCCCEEEEEEcC-------CCCEEEEEECCCCcEEEeeCCCce-----EEeeeecccccccceec------
Confidence 578999999999999997742 245799999999999988766554 66899999999999771
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC--ccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~--~~~~~~~~SpDGk~ 345 (954)
....++.+++ ++....+... .....++|||||++
T Consensus 105 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 141 (360)
T d1k32a3 105 -------------------------------------------DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRF 141 (360)
T ss_dssp -------------------------------------------TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCE
T ss_pred -------------------------------------------cccccccccccccceeeeeecccccccchhhccceee
Confidence 2345788888 6665544433 66788999999999
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
|++......... .......+++|++.+++...++.... ....+.|+|||+.|++...
T Consensus 142 la~~~~~~~~~~---~~~~~~~~~v~d~~~~~~~~~~~~~~-------------~~~~~~~spdg~~l~~~s~------- 198 (360)
T d1k32a3 142 IAYGFPLKHGET---DGYVMQAIHVYDMEGRKIFAATTENS-------------HDYAPAFDADSKNLYYLSY------- 198 (360)
T ss_dssp EEEEEEECSSTT---CSCCEEEEEEEETTTTEEEECSCSSS-------------BEEEEEECTTSCEEEEEES-------
T ss_pred eeeeccccccce---eeccccceeeeccccCceeeeccccc-------------ccccccccCCCCEEEEEeC-------
Confidence 999875543211 11223468899999888777665432 2345789999999887621
Q ss_pred cccccCCCeEEEEecCC-----CCCCCceEEeecccccCceeeccCCceEEEEEec-cccceEEEEEcCCCCCCCcEEEe
Q 002194 426 KVEVTPRDIIYTQQAEP-----VQGEGPEILHKLDLRYGGISWCDDSLALVYESWY-KTRRTRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~-----~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~-~~~~~~l~~~d~~~~~~~~~~l~ 499 (954)
+..+.+++... ..+.+...+.........+.|+++++.++..... .+...+++.++..++ ....+.
T Consensus 199 ------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 270 (360)
T d1k32a3 199 ------RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG--DYRMII 270 (360)
T ss_dssp ------CCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB--CEEEEE
T ss_pred ------CCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcC--ceeEee
Confidence 11222222100 0111222233333445567899999877654321 112245777776654 223322
Q ss_pred cCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCccccccee
Q 002194 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (954)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 579 (954)
...... .. +.+..++....+.. .......|++||+++++...+... +
T Consensus 271 ~~~~~~-~~------~~~~~~~~~~~~~~------------------~~~~~~~i~~~d~~~~~~~~~~~~--------v 317 (360)
T d1k32a3 271 PLESSI-LI------YSVPVHGEFAAYYQ------------------GAPEKGVLLKYDVKTRKVTEVKNN--------L 317 (360)
T ss_dssp ECSSEE-EE------EECCCCCSHHHHHH------------------CCCCCEEEEEEETTTCCEEEEEEE--------E
T ss_pred ecCCCc-eE------EEEEecCCCeeEEE------------------ecCCCCEEEEEECCCCeEEEecCC--------c
Confidence 111100 00 12222221111110 011245699999999887655421 1
Q ss_pred EEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEee
Q 002194 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQIT 625 (954)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt 625 (954)
. ..+|||||++|++.... ..++++++.+++.+...
T Consensus 318 ~-------~~~~SpDG~~l~~~~~D----g~i~v~d~~~~~~~~~~ 352 (360)
T d1k32a3 318 T-------DLRLSADRKTVMVRKDD----GKIYTFPLEKPEDERTV 352 (360)
T ss_dssp E-------EEEECTTSCEEEEEETT----SCEEEEESSCTTSCEEC
T ss_pred C-------EEEECCCCCEEEEEECC----CeEEEEECCCCCcceEE
Confidence 1 25799999999876554 45999999887665533
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=2.8e-22 Score=216.18 Aligned_cols=232 Identities=16% Similarity=0.154 Sum_probs=169.5
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcE
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (954)
.....+.++|++.||.+|++++++|++ +++.|+||++||+.... ......+..|+++||+
T Consensus 52 ~~~~~~~v~~~~~dg~~i~~~l~~P~~-----~~~~P~vv~~HG~~~~~---------------~~~~~~~~~la~~Gy~ 111 (318)
T d1l7aa_ 52 DGVKVYRLTYKSFGNARITGWYAVPDK-----EGPHPAIVKYHGYNASY---------------DGEIHEMVNWALHGYA 111 (318)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEESS-----CSCEEEEEEECCTTCCS---------------GGGHHHHHHHHHTTCE
T ss_pred CCeEEEEEEEECCCCcEEEEEEEecCC-----CCCceEEEEecCCCCCc---------------cchHHHHHHHHHCCCE
Confidence 445678999999999999999999976 45699999999963211 1112457789999999
Q ss_pred EEEcCCCCCCCCCCcccc--------------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHH
Q 002194 715 ILGGPTTPIIGEGDEEAN--------------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA 774 (954)
Q Consensus 715 V~~~~~~~~~G~G~~~~~--------------------~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~ 774 (954)
|++++++ |+|.+... .......+.|...+++++..++.+|+++++++|+|+||.+++
T Consensus 112 vi~~D~r---G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~ 188 (318)
T d1l7aa_ 112 TFGMLVR---GQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTI 188 (318)
T ss_dssp EEEECCT---TTSSSCCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHH
T ss_pred EEEEeeC---CCCCCCCCcccchhhhhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHH
Confidence 9995554 55444211 112345678999999999999999999999999999999999
Q ss_pred HHHHhCCCcccEEEEeccCCCCCCC------CCCCcc------ccchhhh---cHHHHHhcCcccccCCCCCCEEEEEeC
Q 002194 775 NLLAHAPHLFCCGIARSGAYNRTLT------PFGFQN------EDRTLWE---ATSTYVEMSPFMSANKLKKPILLVHGE 839 (954)
Q Consensus 775 ~~a~~~p~~~~a~v~~~~~~~~~~~------~~~~~~------~~~~~~~---~~~~~~~~sp~~~~~~~~~P~Lii~G~ 839 (954)
.++...+ .++++++..|....... ...... .....+. ........++...+.++++|+||+||+
T Consensus 189 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~ 267 (318)
T d1l7aa_ 189 AAAALSD-IPKAAVADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGL 267 (318)
T ss_dssp HHHHHCS-CCSEEEEESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEET
T ss_pred HHhhcCc-ccceEEEeccccccHHHHhhcccccccchhhhhhhccccccccccccccccccccccccccCCCCEEEEEEC
Confidence 9999995 47777776664321100 000000 0001111 112233456677888999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhccc
Q 002194 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (954)
+|.+|| ++++.++++++ +.++++++||+++|.+. .+..+++++||++||++
T Consensus 268 ~D~~vp--~~~~~~~~~~l---~~~~~l~~~~~~gH~~~-----~~~~~~~~~fl~~~LkG 318 (318)
T d1l7aa_ 268 IDKVTP--PSTVFAAYNHL---ETKKELKVYRYFGHEYI-----PAFQTEKLAFFKQILKG 318 (318)
T ss_dssp TCSSSC--HHHHHHHHHHC---CSSEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHCC
T ss_pred CCCCcC--HHHHHHHHHHc---CCCcEEEEECCCCCCCc-----HHHHHHHHHHHHHhCCC
Confidence 999999 99999998876 45789999999999864 46678899999999963
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=5.8e-20 Score=207.56 Aligned_cols=358 Identities=12% Similarity=0.077 Sum_probs=219.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCC-
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG- 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~- 188 (954)
.....+|||||++|+|..+. ... .|-++...+|++++.. +..++|+.....
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~----------------------~~~--~r~s~~~~~~i~d~~~----~~~~~l~~~~~~~ 113 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNV----------------------EPI--YQHSYTGYYVLSKIPH----GDPQSLDPPEVSN 113 (465)
T ss_dssp TCSEEEECTTSSEEEEEESC----------------------CCC--SSSCCCSEEEEEESSS----CCCEECCCTTCCS
T ss_pred ccceeEECCCCCeEEEEEcc----------------------cce--eEeeccccEEEEEccC----CceeeccCccCCc
Confidence 34567899999999998763 111 1112335899999965 556666533222
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc--cc------------cccceeEecC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL--NA------------IFDNFVWVNN 254 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~--~~------------~~~~~~wspD 254 (954)
..+..|.|||||++|||++ ..+||+++..+++..++|..+.... ++ .-..+.||||
T Consensus 114 ~~l~~~~wSPDG~~iafv~----------~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPD 183 (465)
T d1xfda1 114 AKLQYAGWGPKGQQLIFIF----------ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD 183 (465)
T ss_dssp CCCSBCCBCSSTTCEEEEE----------TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT
T ss_pred cccceeeeccCCceEEEEe----------cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCC
Confidence 2567899999999999987 5689999999999888887554221 11 0124669999
Q ss_pred CeEEEEEecCCCCCC----CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcC
Q 002194 255 STLLVCTIPLLRGDP----PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG 329 (954)
Q Consensus 255 G~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~ 329 (954)
|+.|+|..-+..... +.... ...+.... +.++.-+.. ....+|+++++ ++..+...
T Consensus 184 gk~iaf~~~D~s~V~~~~~~~~~~-~~~p~~~~---------------~~Yp~~G~~---np~~~l~v~d~~~~~~~~~~ 244 (465)
T d1xfda1 184 GTRLAYAAINDSRVPIMELPTYTG-SIYPTVKP---------------YHYPKAGSE---NPSISLHVIGLNGPTHDLEM 244 (465)
T ss_dssp SSEEEEEEEECTTSCEEEECCCSS-SSSCCCEE---------------EECCBTTSC---CCEEEEEEEESSSSCCCEEC
T ss_pred CCeEEEEEecccccceeecccccc-cccceeee---------------eeccccCCC---CCceeEEEEecCCCcEEEEE
Confidence 999999854433321 00000 00000000 011111000 02357999999 55433322
Q ss_pred CC--------ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCc
Q 002194 330 PP--------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (954)
Q Consensus 330 ~~--------~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~ 401 (954)
.+ ..+..+.|+||++.+++..++.... ..+.++|..+++.+.+....... +.+ ...
T Consensus 245 ~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~---------~~i~~~d~~tg~~~~~~~e~~~~----wv~---~~~ 308 (465)
T d1xfda1 245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV---------SILTLCDATTGVCTKKHEDESEA----WLH---RQN 308 (465)
T ss_dssp CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE---------EEEEEEETTTCCEEEEEEEECSS----CCC---CCC
T ss_pred eccCcCccccceeeeeEEcCCCeEEEEEEcccccc---------ceEEEEcCCCCcEEEEEEEcCCc----eEe---ccC
Confidence 21 1235678999998777776554321 26888999888777665422111 111 112
Q ss_pred cceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecC----CCCCCCceEEeecccccCce-eeccCCceEEEEEec
Q 002194 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAE----PVQGEGPEILHKLDLRYGGI-SWCDDSLALVYESWY 476 (954)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~g~~~~~l~~~~~~~~~~-~~spDg~~l~~~~~~ 476 (954)
..+.|+|||+.++|..... .+++++++.+.+. ...++..++||.+++.+..+ +|..+++.|+|.++.
T Consensus 309 ~~p~~~~dg~~~~fi~~se--------~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~ 380 (465)
T d1xfda1 309 EEPVFSKDGRKFFFIRAIP--------QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE 380 (465)
T ss_dssp CCCEECTTSCSEEEEEEEC--------CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS
T ss_pred CceeEccCCCeeEEEEeee--------ecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeC
Confidence 3578999999988762221 1346677766431 12455678899999988774 799999999999875
Q ss_pred cc-cceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEE
Q 002194 477 KT-RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLD 555 (954)
Q Consensus 477 ~~-~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 555 (954)
+. .+.+||.++++++ ....+++..... .++...++|||||++++....+. +.|...
T Consensus 381 ~~p~~~hly~v~l~g~-~~~~~lt~~~~~----~~~~~~~~~S~~~~y~v~~~s~~------------------~~P~~~ 437 (465)
T d1xfda1 381 DLPRRRQLYSANTVGN-FNRQCLSCDLVE----NCTYFSASFSHSMDFFLLKCEGP------------------GVPMVT 437 (465)
T ss_dssp SCTTCCEEEEECSSTT-CCCBCSSTTSSS----SCCCCEEEECTTSSEEEEECCSS------------------SSCCEE
T ss_pred CCCCceEEEEEECCCC-CcceeeccccCC----CCCEEEEEECCCCCEEEEEeecC------------------CCCeEE
Confidence 43 4578999999986 233444322111 11222378999999988776322 345577
Q ss_pred EEECCCCCeEEEeccC
Q 002194 556 LFDINTGSKERIWESD 571 (954)
Q Consensus 556 ~~d~~~g~~~~l~~~~ 571 (954)
+++..+++...+...+
T Consensus 438 ~~~~~~~~~~~~Le~N 453 (465)
T d1xfda1 438 VHNTTDKKKMFDLETN 453 (465)
T ss_dssp EEETTTCCEEEEEECC
T ss_pred EEECCCCCEEEEEcCC
Confidence 8887777766555444
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.9e-20 Score=208.13 Aligned_cols=356 Identities=12% Similarity=0.051 Sum_probs=203.1
Q ss_pred ceEEEEccCCCCCCceeee-ecCCCCC-cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 164 GIGIHQLFPDGKLGQEIEI-QGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~l-t~~~~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
+|+++++.+ +..+.| ...+-.. .+....|||||++|+|..+....-..+....+|++|+.+++.++|+......
T Consensus 38 ~i~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~ 113 (465)
T d1xfda1 38 TVRLWNVET----NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN 113 (465)
T ss_dssp CEEEBCGGG----CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS
T ss_pred cEEEEECCC----CCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCc
Confidence 688888864 343443 2211111 4567789999999999765332212245678999999999999887544321
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
..+..+.|||||+.|+|+ ...+||.++.
T Consensus 114 --~~l~~~~wSPDG~~iafv--------------------------------------------------~~~nl~~~~~ 141 (465)
T d1xfda1 114 --AKLQYAGWGPKGQQLIFI--------------------------------------------------FENNIYYCAH 141 (465)
T ss_dssp --CCCSBCCBCSSTTCEEEE--------------------------------------------------ETTEEEEESS
T ss_pred --cccceeeeccCCceEEEE--------------------------------------------------ecceEEEEec
Confidence 114578999999999998 2345788777
Q ss_pred -CCceeEcCCCc--c------------------ccccccCCCCcEEEEEeecCCcc--ccc----------------ccC
Q 002194 322 -DGTVKEIGPPA--V------------------YTSLDPSPDEKYILISSIHRPYS--FIV----------------PCG 362 (954)
Q Consensus 322 -~G~~~~l~~~~--~------------------~~~~~~SpDGk~l~~~s~~~~~~--~~~----------------~~~ 362 (954)
++...+++..+ . ...+.|||||++|||.+.+...- +.. |..
T Consensus 142 ~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~ 221 (465)
T d1xfda1 142 VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA 221 (465)
T ss_dssp SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred CCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecccc
Confidence 66655555431 1 12455999999999987543210 000 111
Q ss_pred CC---CcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEe
Q 002194 363 RF---PRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQ 439 (954)
Q Consensus 363 ~~---~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~ 439 (954)
.. ...++++|++++..+.....+.... ........+.|+||++.++++.++. .....+++++
T Consensus 222 G~~np~~~l~v~d~~~~~~~~~~~~~~~~~------~~~~y~~~~~W~~d~~~~~~~~nR~---------q~~~~i~~~d 286 (465)
T d1xfda1 222 GSENPSISLHVIGLNGPTHDLEMMPPDDPR------MREYYITMVKWATSTKVAVTWLNRA---------QNVSILTLCD 286 (465)
T ss_dssp TSCCCEEEEEEEESSSSCCCEECCCCCCGG------GSSEEEEEEEESSSSEEEEEEEETT---------SCEEEEEEEE
T ss_pred CCCCCceeEEEEecCCCcEEEEEeccCcCc------cccceeeeeEEcCCCeEEEEEEccc---------cccceEEEEc
Confidence 11 1257788887654433222111100 0001134578999998555554432 1234678888
Q ss_pred cCCCCCCCceEEeec--cc----ccCceeeccCCceEEEEE--eccccceEEEEEcCCCCC-----CCcEEEecCCCCCc
Q 002194 440 AEPVQGEGPEILHKL--DL----RYGGISWCDDSLALVYES--WYKTRRTRTWVISPGSKD-----VAPRILFDRSSEDV 506 (954)
Q Consensus 440 ~~~~~g~~~~~l~~~--~~----~~~~~~~spDg~~l~~~~--~~~~~~~~l~~~d~~~~~-----~~~~~l~~~~~~~~ 506 (954)
+ .+++.+.+... +. ....+.|+|||+.++|.. ..++ ..++|.+.+.+.. ...+.+|.+
T Consensus 287 ~---~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g-~~~ly~~~~~~~~~~~~~~~~~~LT~G----- 357 (465)
T d1xfda1 287 A---TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG-RGKFYHITVSSSQPNSSNDNIQSITSG----- 357 (465)
T ss_dssp T---TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS-SSCEEEEEEECSSCCSSSCCCCBSCCS-----
T ss_pred C---CCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecc-cCceEEEEeccccccCCCceeEEeccC-----
Confidence 5 55666655322 11 234589999999987753 3333 3557766543210 122334433
Q ss_pred cCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCC
Q 002194 507 YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQ 586 (954)
Q Consensus 507 ~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 586 (954)
.|.+-.....+.++..|||.+....| ...|||.++++++..+++...... +. ...
T Consensus 358 ---------------~w~V~~i~~~d~~~~~vyF~a~~~~p--~~~hly~v~l~g~~~~~~lt~~~~---~~-----~~~ 412 (465)
T d1xfda1 358 ---------------DWDVTKILAYDEKGNKIYFLSTEDLP--RRRQLYSANTVGNFNRQCLSCDLV---EN-----CTY 412 (465)
T ss_dssp ---------------SSCEEEEEEEETTTTEEEEEESSSCT--TCCEEEEECSSTTCCCBCSSTTSS---SS-----CCC
T ss_pred ---------------CceEEEEEEEcCCCCEEEEEEeCCCC--CceEEEEEECCCCCcceeeccccC---CC-----CCE
Confidence 33222222333344444444443322 346899999997765443332211 00 011
Q ss_pred ccccccccCCEEEEEEecCCCCceEEEEECCCCcee-Eee
Q 002194 587 TEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC-QIT 625 (954)
Q Consensus 587 ~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~-~Lt 625 (954)
...+||||+++++..++++..|. +.+++..+++.. .|+
T Consensus 413 ~~~~~S~~~~y~v~~~s~~~~P~-~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 413 FSASFSHSMDFFLLKCEGPGVPM-VTVHNTTDKKKMFDLE 451 (465)
T ss_dssp CEEEECTTSSEEEEECCSSSSCC-EEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCEEEEEeecCCCCe-EEEEECCCCCEEEEEc
Confidence 13579999999999999998876 556666666544 443
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.86 E-value=1.2e-20 Score=188.11 Aligned_cols=208 Identities=13% Similarity=0.098 Sum_probs=154.6
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEc
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (954)
.+.+++.+.+| +|.+.+.+|..- ...+.+++|++|+.+...+. ..+.+....++.|+++||.|+.
T Consensus 8 ~~~l~i~gp~G-~l~~~~~~p~~~---~~~~~~~~vl~Hph~~~GG~----------~~~~~~~~la~~l~~~G~~vlr- 72 (218)
T d2fuka1 8 SAALTLDGPVG-PLDVAVDLPEPD---VAVQPVTAIVCHPLSTEGGS----------MHNKVVTMAARALRELGITVVR- 72 (218)
T ss_dssp CEEEEEEETTE-EEEEEEECCCTT---SCCCSEEEEEECSCTTTTCS----------TTCHHHHHHHHHHHTTTCEEEE-
T ss_pred ceEEEEeCCCc-cEEEEEEcCCCC---CCCCCcEEEEECCCCCCCcC----------CCChHHHHHHHHHHHcCCeEEE-
Confidence 46788888887 699999998642 22346788889976432211 1111223456778999999999
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC
Q 002194 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (954)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (954)
++++|+|.+.+........++|+.++++|+.++. +.++++++|+||||.+++.++.+. ..+++|+++|..+...
T Consensus 73 --fd~RG~G~S~g~~~~~~~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~--~~~~lil~ap~~~~~~ 146 (218)
T d2fuka1 73 --FNFRSVGTSAGSFDHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWD 146 (218)
T ss_dssp --ECCTTSTTCCSCCCTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBC
T ss_pred --eecCCCccCCCccCcCcchHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhccc--ccceEEEeCCcccchh
Confidence 5667888887654455677899999999999874 457899999999999999988875 3789999998654210
Q ss_pred CCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 002194 799 TPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
+ . ..++.+|+|+|||++|.+|| ++++.++++++. .+++++++||++|.|.
T Consensus 147 ----~-----------------~----~~~~~~P~Lvi~G~~D~~vp--~~~~~~l~~~~~---~~~~l~~i~ga~H~f~ 196 (218)
T d2fuka1 147 ----F-----------------S----DVQPPAQWLVIQGDADEIVD--PQAVYDWLETLE---QQPTLVRMPDTSHFFH 196 (218)
T ss_dssp ----C-----------------T----TCCCCSSEEEEEETTCSSSC--HHHHHHHHTTCS---SCCEEEEETTCCTTCT
T ss_pred ----h-----------------h----ccccccceeeEecCCCcCcC--HHHHHHHHHHcc---CCceEEEeCCCCCCCC
Confidence 0 0 12356899999999999999 998888876543 4578999999999886
Q ss_pred CcccHHHHHHHHHHHHHHhcc
Q 002194 879 ARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 879 ~~~~~~~~~~~i~~fl~~~l~ 899 (954)
. ....+.+.+.+|+++||.
T Consensus 197 ~--~~~~l~~~~~~~v~~~l~ 215 (218)
T d2fuka1 197 R--KLIDLRGALQHGVRRWLP 215 (218)
T ss_dssp T--CHHHHHHHHHHHHGGGCS
T ss_pred C--CHHHHHHHHHHHHHHhcC
Confidence 4 335677889999999974
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.86 E-value=9.4e-20 Score=208.00 Aligned_cols=358 Identities=11% Similarity=-0.013 Sum_probs=204.7
Q ss_pred ceEEEEccCCCCCCceeeee-cCC---CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCC
Q 002194 164 GIGIHQLFPDGKLGQEIEIQ-GFP---DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD 239 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt-~~~---~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 239 (954)
+|++|++.+ ++.+++. ..+ ....+..++|||||++|||..+....-..+...++|++|+++++..+++..+.
T Consensus 37 ~~~~~~~~t----~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~ 112 (470)
T d2bgra1 37 NILVFNAEY----GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPN 112 (470)
T ss_dssp CEEEEETTT----CCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCT
T ss_pred cEEEEECCC----CCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCc
Confidence 789999865 4444442 111 12257889999999999998754322233556789999999999998887766
Q ss_pred ccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEE
Q 002194 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (954)
Q Consensus 240 ~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~ 319 (954)
. +..+.|||||+.|+|. ...+||++
T Consensus 113 ~-----~~~~~~SPDG~~ia~~--------------------------------------------------~~~~l~~~ 137 (470)
T d2bgra1 113 N-----TQWVTWSPVGHKLAYV--------------------------------------------------WNNDIYVK 137 (470)
T ss_dssp T-----EEEEEECSSTTCEEEE--------------------------------------------------ETTEEEEE
T ss_pred c-----ccccccccCcceeeEe--------------------------------------------------ecccceEE
Confidence 4 5689999999999987 22357777
Q ss_pred Ee-CCceeEcCCC--------------------ccccccccCCCCcEEEEEeecCCccc--cc-----------------
Q 002194 320 SL-DGTVKEIGPP--------------------AVYTSLDPSPDEKYILISSIHRPYSF--IV----------------- 359 (954)
Q Consensus 320 ~~-~G~~~~l~~~--------------------~~~~~~~~SpDGk~l~~~s~~~~~~~--~~----------------- 359 (954)
++ +|+..+++.. +....+.|||||++|+|.+.+..... ..
T Consensus 138 ~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~ 217 (470)
T d2bgra1 138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP 217 (470)
T ss_dssp SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred ECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeec
Confidence 77 6666655532 11234669999999999876533110 00
Q ss_pred -cc---CCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeE
Q 002194 360 -PC---GRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDII 435 (954)
Q Consensus 360 -~~---~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l 435 (954)
|. ......+++|+++++....+.... ....+............+.|+++++.++++.+...+ ...-.+
T Consensus 218 ~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~-------~~~~~~ 289 (470)
T d2bgra1 218 YPKAGAVNPTVKFFVVNTDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN-------YSVMDI 289 (470)
T ss_dssp CCBTTSCCCEEEEEEEEGGGCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT-------EEEEEE
T ss_pred cccccccCCcceEEEEECCCcceeeecccc-ccCCccccCCCCceEEEEEEcCCCceeEEEeeccCC-------ceEEEE
Confidence 00 001124556666543321111000 000000000000112357899999866665433211 001133
Q ss_pred EEEecCCCCCCCceEEee------c-c-----cccCceeeccCCceE-EEEEeccccceEEEEEcCCCCCCCcEEEecCC
Q 002194 436 YTQQAEPVQGEGPEILHK------L-D-----LRYGGISWCDDSLAL-VYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (954)
Q Consensus 436 ~~~~~~~~~g~~~~~l~~------~-~-----~~~~~~~~spDg~~l-~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 502 (954)
+.++. .++....+.. . . .....+.|++++... ++.+..++ ..+||.++.+++ ....++...
T Consensus 290 ~~~d~---~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg-~~~ly~~~~~g~--~~~~lt~g~ 363 (470)
T d2bgra1 290 CDYDE---SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG-YRHICYFQIDKK--DCTFITKGT 363 (470)
T ss_dssp EEEET---TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS-CEEEEEEETTCS--CCEESCCSS
T ss_pred EEecC---CCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCc-CceeEEEeccCC--ceeeeccCC
Confidence 44442 3333333210 0 0 112346777776654 45555444 578999998885 566666544
Q ss_pred CCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCC-CeEEEeccCcccccceeEE
Q 002194 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTG-SKERIWESDKEKYYETTVA 581 (954)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-~~~~l~~~~~~~~~~~~~~ 581 (954)
... . -.+++|++.++|..... +.. ....+||.++++++ +.++|+..... +.
T Consensus 364 ~~v-~-------~~~~~d~~~iyf~a~~~------------~~~--p~~~~ly~v~~~g~~~~~~lt~~~~~---~~--- 415 (470)
T d2bgra1 364 WEV-I-------GIEALTSDYLYYISNEY------------KGM--PGGRNLYKIQLSDYTKVTCLSCELNP---ER--- 415 (470)
T ss_dssp SCE-E-------EEEEECSSEEEEEESCG------------GGC--TTCBEEEEEETTCTTCEEESSTTTST---TT---
T ss_pred eeE-E-------EEEEECCCEEEEEEecC------------CCC--cceEEEEEEECCCCCceeEecccccC---CC---
Confidence 321 1 12566777777765221 111 12457999999875 45555532211 00
Q ss_pred eccCCccccccccCCEEEEEEecCCCCceEEEEECCCCce-eEee
Q 002194 582 LMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS-CQIT 625 (954)
Q Consensus 582 ~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~-~~Lt 625 (954)
......+|||||++++..++++..|. +.+++..+|+. +.|+
T Consensus 416 --~~~~s~~fSpdgky~~~~~s~~~~P~-~~l~~~~~g~~v~~le 457 (470)
T d2bgra1 416 --CQYYSVSFSKEAKYYQLRCSGPGLPL-YTLHSSVNDKGLRVLE 457 (470)
T ss_dssp --BCBEEEEECTTSSEEEEEECSBSSCE-EEEEETTTTEEEEEEE
T ss_pred --CCEEEEEECCCCCEEEEEecCCCCCe-EEEEECCCCCEEEEEe
Confidence 00112579999999999999999987 45666677765 4554
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.4e-19 Score=189.65 Aligned_cols=246 Identities=15% Similarity=0.127 Sum_probs=172.7
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcccc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (954)
+|||.|. || +..++|+..+ ..+..|+|||||++|||++. ..+...+|+++.+++..++++.....
T Consensus 20 ~l~i~d~--dG--~~~~~l~~~~--~~~~sP~wSPDGk~IAf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--- 84 (269)
T d2hqsa1 20 ELRVSDY--DG--YNQFVVHRSP--QPLMSPAWSPDGSKLAYVTF------ESGRSALVIQTLANGAVRQVASFPRH--- 84 (269)
T ss_dssp EEEEEET--TS--CSCEEEEEES--SCEEEEEECTTSSEEEEEEC------TTSSCEEEEEETTTCCEEEEECCSSC---
T ss_pred EEEEEcC--CC--CCcEEEecCC--CceeeeEECCCCCEEEEEEe------eccCcceeeeecccCceeEEeeeecc---
Confidence 7999988 55 6778886533 45789999999999999874 45678899999999999888876654
Q ss_pred ccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C
Q 002194 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (954)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~ 322 (954)
...+.|||||+.|++..... +...++.... .
T Consensus 85 --~~~~~~spdg~~i~~~~~~~----------------------------------------------~~~~~~~~~~~~ 116 (269)
T d2hqsa1 85 --NGAPAFSPDGSKLAFALSKT----------------------------------------------GSLNLYVMDLAS 116 (269)
T ss_dssp --EEEEEECTTSSEEEEEECTT----------------------------------------------SSCEEEEEETTT
T ss_pred --cccceecCCCCeeeEeeecC----------------------------------------------Cccceeeccccc
Confidence 45789999999999872110 1223444444 4
Q ss_pred CceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCc
Q 002194 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (954)
Q Consensus 323 G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~ 401 (954)
......... .....+.++++++.+++.+...+ ..++++.+++++...+++.... ..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~~~i~~~~~~~~~~~~~~~~~~-------------~~ 173 (269)
T d2hqsa1 117 GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG----------RPQVYKVNINGGAPQRITWEGS-------------QN 173 (269)
T ss_dssp CCEEECCCCSSCEEEEEECTTSSEEEEEECTTS----------SCEEEEEETTSSCCEECCCSSS-------------EE
T ss_pred ccceeeeeccccccccccccccccceecccccC----------CceEeeeecccccceeeecccc-------------cc
Confidence 444444444 55567889999999999885532 2378888888877666665321 12
Q ss_pred cceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccce
Q 002194 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (954)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 481 (954)
..+.|||||+.+++.... .....+++++. .++. .+++........+.|||||++|+|.+...+ ..
T Consensus 174 ~~~~~spdg~~~~~~~~~----------~~~~~i~~~~~---~~~~-~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~-~~ 238 (269)
T d2hqsa1 174 QDADVSSDGKFMVMVSSN----------GGQQHIAKQDL---ATGG-VQVLSSTFLDETPSLAPNGTMVIYSSSQGM-GS 238 (269)
T ss_dssp EEEEECTTSSEEEEEEEC----------SSCEEEEEEET---TTCC-EEECCCSSSCEEEEECTTSSEEEEEEEETT-EE
T ss_pred cccccccccceeEEEeec----------CCceeeeEeec---cccc-ceEeecCccccceEECCCCCEEEEEEcCCC-Cc
Confidence 357899999998887321 22346788874 4444 455555556678999999999999987654 47
Q ss_pred EEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeecc
Q 002194 482 RTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTS 519 (954)
Q Consensus 482 ~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~sp 519 (954)
+||+++++++ ..+.++..... +.. ++|||
T Consensus 239 ~l~~~~~dg~--~~~~lt~~~g~-~~~------p~WSP 267 (269)
T d2hqsa1 239 VLNLVSTDGR--FKARLPATDGQ-VKF------PAWSP 267 (269)
T ss_dssp EEEEEETTSC--CEEECCCSSSE-EEE------EEECC
T ss_pred EEEEEECCCC--CEEEEeCCCCc-EEe------EEeCC
Confidence 8999999985 45666654322 111 67887
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.84 E-value=2.5e-19 Score=204.43 Aligned_cols=359 Identities=14% Similarity=0.040 Sum_probs=215.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+.+++|||||++|||.++. . ...+.++...+|||++.+ ++.++++..+ .
T Consensus 63 ~i~~~~~SpDg~~i~~~~~~----------------------~--~~~r~s~~~~~~l~d~~~----~~~~~l~~~~--~ 112 (470)
T d2bgra1 63 SINDYSISPDGQFILLEYNY----------------------V--KQWRHSYTASYDIYDLNK----RQLITEERIP--N 112 (470)
T ss_dssp CCCEEEECTTSSEEEEEEEE----------------------E--ECSSSCEEEEEEEEETTT----TEECCSSCCC--T
T ss_pred ccceeEECCCCCEEEEEECC----------------------c--ceeeeccCceEEEEECCC----CcccccccCC--c
Confidence 46788999999999998763 1 111223446899999965 6666666543 4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc--c------------ccccceeEecCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL--N------------AIFDNFVWVNNS 255 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~--~------------~~~~~~~wspDG 255 (954)
.+..+.|||||++|||.+ +.+||+++..+|+..+++....... + .....+.|||||
T Consensus 113 ~~~~~~~SPDG~~ia~~~----------~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDG 182 (470)
T d2bgra1 113 NTQWVTWSPVGHKLAYVW----------NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 182 (470)
T ss_dssp TEEEEEECSSTTCEEEEE----------TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS
T ss_pred cccccccccCcceeeEee----------cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCC
Confidence 688999999999999976 4589999999999888876543211 1 012356799999
Q ss_pred eEEEEEecCCCCCCCC-CC--CCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCC-
Q 002194 256 TLLVCTIPLLRGDPPK-KP--LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP- 330 (954)
Q Consensus 256 ~~l~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~- 330 (954)
+.|++...+....... .. ....... ..... ...+..+ .......++++++ ++....+..
T Consensus 183 k~ia~~~~d~~~v~~~~~~~~~~~~~~~------~~~~~-------~~~~~~g---~~~~~~~~~v~~~~~~~~~~~~~~ 246 (470)
T d2bgra1 183 TFLAYAQFNDTEVPLIEYSFYSDESLQY------PKTVR-------VPYPKAG---AVNPTVKFFVVNTDSLSSVTNATS 246 (470)
T ss_dssp SEEEEEEEECTTCCEEEEEECCSTTCSS------CEEEE-------EECCBTT---SCCCEEEEEEEEGGGCCSSSCCCE
T ss_pred CccceeEecCCcCceEEEEeeccCCCCC------Ceeee-------ecccccc---ccCCcceEEEEECCCcceeeeccc
Confidence 9999985443322100 00 0000000 00000 0000000 0013346788888 553222211
Q ss_pred -----------C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCC-cccccc
Q 002194 331 -----------P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP-IAFNSV 397 (954)
Q Consensus 331 -----------~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p-~~~~~~ 397 (954)
. ..+..+.|+++++.+++...+..... ...++.+|..++..+.+.......... .+...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~-------~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~- 318 (470)
T d2bgra1 247 IQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYS-------VMDICDYDESSGRWNCLVARQHIEMSTTGWVGR- 318 (470)
T ss_dssp EEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEE-------EEEEEEEETTTTEEEECGGGCEEEECSSSCSSS-
T ss_pred cccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCce-------EEEEEEecCCCCcEEEEEEEeeeeeeccceeec-
Confidence 1 23356889999987777654432111 012334444455655554322111111 01111
Q ss_pred ccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEecc
Q 002194 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 398 ~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
.....+.|+++++..+++.... ++..+||+++. +++..++++.+++.+..+ +++|++.|+|.++..
T Consensus 319 -~~~~~~~~~~~~~~~~~~~s~~---------dg~~~ly~~~~---~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~ 384 (470)
T d2bgra1 319 -FRPSEPHFTLDGNSFYKIISNE---------EGYRHICYFQI---DKKDCTFITKGTWEVIGI-EALTSDYLYYISNEY 384 (470)
T ss_dssp -SSCCCCEECTTSSEEEEEEECT---------TSCEEEEEEET---TCSCCEESCCSSSCEEEE-EEECSSEEEEEESCG
T ss_pred -ccCCCceeeecCCCcEEEEecc---------CcCceeEEEec---cCCceeeeccCCeeEEEE-EEECCCEEEEEEecC
Confidence 1123567888888776664333 34668999995 888899999888887766 677888999887643
Q ss_pred c---cceEEEEEcCCCCCCCcEEEecCC---CCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCC
Q 002194 478 T---RRTRTWVISPGSKDVAPRILFDRS---SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNI 551 (954)
Q Consensus 478 ~---~~~~l~~~d~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (954)
. .+.+||.++++++ ....+++... ...+++ ++|||||++++....+. +.
T Consensus 385 ~~~p~~~~ly~v~~~g~-~~~~~lt~~~~~~~~~~~s------~~fSpdgky~~~~~s~~------------------~~ 439 (470)
T d2bgra1 385 KGMPGGRNLYKIQLSDY-TKVTCLSCELNPERCQYYS------VSFSKEAKYYQLRCSGP------------------GL 439 (470)
T ss_dssp GGCTTCBEEEEEETTCT-TCEEESSTTTSTTTBCBEE------EEECTTSSEEEEEECSB------------------SS
T ss_pred CCCcceEEEEEEECCCC-CceeEecccccCCCCCEEE------EEECCCCCEEEEEecCC------------------CC
Confidence 2 3468999999886 3455555321 112222 78999999999887332 24
Q ss_pred CeEEEEECCCCCeEEEeccC
Q 002194 552 PFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 552 ~~l~~~d~~~g~~~~l~~~~ 571 (954)
|.+.+++..+|+..+++..+
T Consensus 440 P~~~l~~~~~g~~v~~le~n 459 (470)
T d2bgra1 440 PLYTLHSSVNDKGLRVLEDN 459 (470)
T ss_dssp CEEEEEETTTTEEEEEEECC
T ss_pred CeEEEEECCCCCEEEEEecc
Confidence 55788888888887776654
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.84 E-value=2.2e-20 Score=190.94 Aligned_cols=207 Identities=16% Similarity=0.116 Sum_probs=150.3
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEc
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (954)
.|.|+|++.||.++.+++..|.+ +++|+||++|++. +........++.|+++||.|+++
T Consensus 3 ~e~v~~~~~dg~~~~a~~~~P~~------~~~P~vl~~h~~~---------------G~~~~~~~~a~~lA~~Gy~vl~p 61 (233)
T d1dina_ 3 TEGISIQSYDGHTFGALVGSPAK------APAPVIVIAQEIF---------------GVNAFMRETVSWLVDQGYAAVCP 61 (233)
T ss_dssp CTTCCEECTTSCEECEEEECCSS------SSEEEEEEECCTT---------------BSCHHHHHHHHHHHHTTCEEEEE
T ss_pred ceEEEEEcCCCCEEEEEEECCCC------CCceEEEEeCCCC---------------CCCHHHHHHHHHHHhcCCcceee
Confidence 45678999999999999999963 3699999999742 01111224577899999999998
Q ss_pred CCCCCCCCCCcccc--------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcc
Q 002194 719 PTTPIIGEGDEEAN--------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (954)
Q Consensus 719 ~~~~~~G~G~~~~~--------------~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~ 784 (954)
+.++..+.+..... .........|+.++++++.+.+. +..||+++|+|+||.+++.++.+. .+
T Consensus 62 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~~-~~~~i~~~G~s~Gg~~a~~~a~~~--~~ 138 (233)
T d1dina_ 62 DLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY-SNGKVGLVGYCLGGALAFLVAAKG--YV 138 (233)
T ss_dssp CGGGGTSTTCBCCTTSHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTT-EEEEEEEEEETHHHHHHHHHHHHT--CS
T ss_pred eeccCCCcCcccChHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCC-CCCceEEEEecccccceeeccccc--cc
Confidence 76554443322111 01123457899999999988774 557999999999999999988775 36
Q ss_pred cEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc
Q 002194 785 CCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (954)
Q Consensus 785 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (954)
.++++..+.. . .++...+.++++|+|++||++|..|| .+..+.+++.++ .+++
T Consensus 139 ~~~~~~~~~~--------~----------------~~~~~~~~~i~~Pvl~~~G~~D~~vp--~e~~~~~~~~~~-~~~~ 191 (233)
T d1dina_ 139 DRAVGYYGVG--------L----------------EKQLNKVPEVKHPALFHMGGQDHFVP--APSRQLITEGFG-ANPL 191 (233)
T ss_dssp SEEEEESCSC--------G----------------GGGGGGGGGCCSCEEEEEETTCTTSC--HHHHHHHHHHHT-TCTT
T ss_pred ceeccccccc--------c----------------ccchhhhhccCCcceeeecccccCCC--HHHHHHHHHHHh-cCCC
Confidence 6666655421 0 12233455788999999999999998 888877777664 5788
Q ss_pred EEEEEeCCCCCcCCCc-------ccHHHHHHHHHHHHHH
Q 002194 865 CRLVILPFESHGYAAR-------ESIMHVLWETDRWLQK 896 (954)
Q Consensus 865 ~~~~~~~~~~H~~~~~-------~~~~~~~~~i~~fl~~ 896 (954)
+++++|||++|+|... ...+..++++++||..
T Consensus 192 ~~~~~y~ga~HgF~~~~~~~y~~~aa~~a~~r~~~ffa~ 230 (233)
T d1dina_ 192 LQVHWYEEAGHSFARTSSSGYVASAAALANERTLDFLAP 230 (233)
T ss_dssp EEEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGG
T ss_pred EEEEEECCCCcCCCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 9999999999998521 2234567888899864
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=6e-19 Score=184.80 Aligned_cols=254 Identities=15% Similarity=0.147 Sum_probs=177.5
Q ss_pred CeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002194 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (954)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (954)
.+|||++..+ .+.+..+||++|.+|+..++|+..+.. +.+++|||||+.|+|+....
T Consensus 4 ~~iay~~~~~---~~~~~~~l~i~d~dG~~~~~l~~~~~~-----~~sP~wSPDGk~IAf~~~~~--------------- 60 (269)
T d2hqsa1 4 TRIAYVVQTN---GGQFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFES--------------- 60 (269)
T ss_dssp CEEEEEEECS---SSSCCEEEEEEETTSCSCEEEEEESSC-----EEEEEECTTSSEEEEEECTT---------------
T ss_pred CeEEEEEEeC---CCCceEEEEEEcCCCCCcEEEecCCCc-----eeeeEECCCCCEEEEEEeec---------------
Confidence 7899988643 344456899999999999999877664 56899999999999982110
Q ss_pred eeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccc
Q 002194 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (954)
Q Consensus 281 ~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~ 358 (954)
....++.++. ++..++++.. +....+.|||||++|++.+.....
T Consensus 61 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~--- 106 (269)
T d2hqsa1 61 -------------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGS--- 106 (269)
T ss_dssp -------------------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSS---
T ss_pred -------------------------------cCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCc---
Confidence 2345888888 7777777766 677789999999999998854321
Q ss_pred cccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEE
Q 002194 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (954)
Q Consensus 359 ~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (954)
..+..+............... ......|+++++.+++.... .+...+++.
T Consensus 107 -------~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~----------~g~~~i~~~ 156 (269)
T d2hqsa1 107 -------LNLYVMDLASGQIRQVTDGRS-------------NNTEPTWFPDSQNLAFTSDQ----------AGRPQVYKV 156 (269)
T ss_dssp -------CEEEEEETTTCCEEECCCCSS-------------CEEEEEECTTSSEEEEEECT----------TSSCEEEEE
T ss_pred -------cceeecccccccceeeeeccc-------------cccccccccccccceecccc----------cCCceEeee
Confidence 123333333333333222211 11346788888877666221 234478888
Q ss_pred ecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeec
Q 002194 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (954)
Q Consensus 439 ~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s 518 (954)
+. +++...+++........+.|||||+.+++.....+ ...|++++..++ . ..++.....+ . .++||
T Consensus 157 ~~---~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~-~~~i~~~~~~~~--~-~~~~~~~~~~-~------~p~~S 222 (269)
T d2hqsa1 157 NI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG-QQHIAKQDLATG--G-VQVLSSTFLD-E------TPSLA 222 (269)
T ss_dssp ET---TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS-CEEEEEEETTTC--C-EEECCCSSSC-E------EEEEC
T ss_pred ec---ccccceeeecccccccccccccccceeEEEeecCC-ceeeeEeecccc--c-ceEeecCccc-c------ceEEC
Confidence 85 66777777777777788999999999999987665 478999998875 2 3333222211 1 16899
Q ss_pred cCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcc
Q 002194 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKE 573 (954)
Q Consensus 519 pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 573 (954)
|||++|+|..... ....||+++++++..++|+..++.
T Consensus 223 PDG~~i~f~s~~~------------------~~~~l~~~~~dg~~~~~lt~~~g~ 259 (269)
T d2hqsa1 223 PNGTMVIYSSSQG------------------MGSVLNLVSTDGRFKARLPATDGQ 259 (269)
T ss_dssp TTSSEEEEEEEET------------------TEEEEEEEETTSCCEEECCCSSSE
T ss_pred CCCCEEEEEEcCC------------------CCcEEEEEECCCCCEEEEeCCCCc
Confidence 9999999987321 234699999999999999987753
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.82 E-value=1e-19 Score=189.03 Aligned_cols=206 Identities=16% Similarity=0.089 Sum_probs=148.5
Q ss_pred eEEEEEEcCCC-eEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 639 KELIKYQRKDG-VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 639 ~~~~~~~~~~g-~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
...+++....+ ....++||+|++. .++++|+||++||+... ... ...++..||++||+|+.
T Consensus 23 ~~~~~~~~~~~~g~~~~~ly~P~~~---~~g~~P~Vv~~HG~~g~-----------~~~----~~~~a~~lA~~Gy~V~~ 84 (260)
T d1jfra_ 23 TSQTSVSSLVASGFGGGTIYYPTST---ADGTFGAVVISPGFTAY-----------QSS----IAWLGPRLASQGFVVFT 84 (260)
T ss_dssp EEEEEECTTTCSSSCCEEEEEESCC---TTCCEEEEEEECCTTCC-----------GGG----TTTHHHHHHTTTCEEEE
T ss_pred eeEEEeccCCcCcccCEEEEEcCCC---CCCCccEEEEECCCCCC-----------HHH----HHHHHHHHHhCCCEEEE
Confidence 44445543221 1245789999752 23469999999996311 011 12467889999999999
Q ss_pred cCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR----GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~----~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
++++ |.+.. ......|+.++++++.+. +.+|++||+++|||+||.+++.++... .+++|+|+++|.
T Consensus 85 ~d~~---~~~~~------~~~~~~d~~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~-~~~~A~v~~~~~ 154 (260)
T d1jfra_ 85 IDTN---TTLDQ------PDSRGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSR-TSLKAAIPLTGW 154 (260)
T ss_dssp ECCS---STTCC------HHHHHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHC-TTCSEEEEESCC
T ss_pred EeeC---CCcCC------chhhHHHHHHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhh-ccchhheeeecc
Confidence 6553 33222 234457788889998884 568999999999999999999999998 469999998875
Q ss_pred CCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002194 794 YNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (954)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (954)
.. .....++++|+|++||++|.++| +++..+.+......+.+++++.++++
T Consensus 155 ~~---------------------------~~~~~~~~~P~l~i~G~~D~~vp--~~~~~~~~~~~~~~~~~~~~~~i~ga 205 (260)
T d1jfra_ 155 NT---------------------------DKTWPELRTPTLVVGADGDTVAP--VATHSKPFYESLPGSLDKAYLELRGA 205 (260)
T ss_dssp CS---------------------------CCCCTTCCSCEEEEEETTCSSSC--TTTTHHHHHHHSCTTSCEEEEEETTC
T ss_pred cc---------------------------cccccccccceeEEecCCCCCCC--HHHHHHHHHHhcccCCCEEEEEECCC
Confidence 32 11234578999999999999998 77655555555556788999999999
Q ss_pred CCcCCCcccHHHHHHHHHHHHHHhcccCC
Q 002194 874 SHGYAARESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 874 ~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
+|.+....+ ..+.+.+++||+.||+..+
T Consensus 206 ~H~~~~~~~-~~~~~~~~~wl~~~L~~d~ 233 (260)
T d1jfra_ 206 SHFTPNTSD-TTIAKYSISWLKRFIDSDT 233 (260)
T ss_dssp CTTGGGSCC-HHHHHHHHHHHHHHHSCCG
T ss_pred ccCCCCCCh-HHHHHHHHHHHHHHhcCch
Confidence 998754333 5667788999999997653
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.81 E-value=1.9e-19 Score=193.64 Aligned_cols=237 Identities=18% Similarity=0.143 Sum_probs=154.6
Q ss_pred CCCceEEEEEEcCCCe-EEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CC
Q 002194 635 ASLQKELIKYQRKDGV-QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RG 712 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~-~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G 712 (954)
..+..+.+++++.+|. .|.+++|+|++- +++.|+|||+|||.|..+... ....+...++. .|
T Consensus 46 ~~v~~~~~~~~~~~g~~~i~~~~~~P~~~----~~~~Pvvv~iHGGG~~~g~~~------------~~~~~~~~la~~~G 109 (317)
T d1lzla_ 46 DGVSLRELSAPGLDGDPEVKIRFVTPDNT----AGPVPVLLWIHGGGFAIGTAE------------SSDPFCVEVARELG 109 (317)
T ss_dssp TTEEEEEEEECCSTTCCCEEEEEEEESSC----CSCEEEEEEECCSTTTSCCGG------------GGHHHHHHHHHHHC
T ss_pred CCceEEEEEEecCCCCceEEEEEECCCCC----CCCCcEEEEecCccccccccc------------ccchHHHhHHhhcC
Confidence 3456788999998885 699999999752 346999999999965433221 12234555655 69
Q ss_pred cEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhCCC----ccc
Q 002194 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFC 785 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~ 785 (954)
|+|+..+|+... +..+...++|+.++++|+.++ ..+|++||+|+|+|+||++++.++.+.++ ...
T Consensus 110 ~~V~~vdYrl~p--------e~~~~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~ 181 (317)
T d1lzla_ 110 FAVANVEYRLAP--------ETTFPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVA 181 (317)
T ss_dssp CEEEEECCCCTT--------TSCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCC
T ss_pred Cccccccccccc--------cccccccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhccccccc
Confidence 999998875432 223456788899999998765 34899999999999999999998875421 123
Q ss_pred EEEEeccCCCCCCCCCC---Ccc-----ccchhhhcH-------------HHHHhcCcccccC-CCCCCEEEEEeCCCCC
Q 002194 786 CGIARSGAYNRTLTPFG---FQN-----EDRTLWEAT-------------STYVEMSPFMSAN-KLKKPILLVHGEEDNN 843 (954)
Q Consensus 786 a~v~~~~~~~~~~~~~~---~~~-----~~~~~~~~~-------------~~~~~~sp~~~~~-~~~~P~Lii~G~~D~~ 843 (954)
..+...+..+....... +.. .....+... ......+|..... ....|+||+||+.|..
T Consensus 182 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~li~~g~~D~l 261 (317)
T d1lzla_ 182 FQFLEIPELDDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELDPL 261 (317)
T ss_dssp EEEEESCCCCTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGCSCCTTCCCEEEEEETTCTT
T ss_pred ccccccccccccccccccccccccchhhhhhhHHHHhhhccccccCCCCchhccccCchhhhhccCCCCeEEEECCCCCC
Confidence 33333332221111000 000 000000000 0000011111111 2237999999999943
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCc---ccHHHHHHHHHHHHHHhcc
Q 002194 844 SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR---ESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 844 v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~---~~~~~~~~~i~~fl~~~l~ 899 (954)
.+++++++++|++.|+++++++||+++|+|... ........++++||.++|+
T Consensus 262 ----~~~~~~~~~~L~~~G~~v~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~l~r~Lr 316 (317)
T d1lzla_ 262 ----RDEGIEYALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 316 (317)
T ss_dssp ----HHHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHHHHHCCCCEEEEEECcCccCCcccCCchHHHHHHHHHHHHHHHHhC
Confidence 689999999999999999999999999987422 2234667789999999985
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.81 E-value=2e-19 Score=196.21 Aligned_cols=243 Identities=14% Similarity=0.048 Sum_probs=164.8
Q ss_pred cCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCc
Q 002194 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (954)
Q Consensus 634 ~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (954)
...+..+..++++.||..|.+.+|+|++. +++.|+|||+|||.|..+... .......++.++++||
T Consensus 74 ~~~v~~~~~~i~~~dg~~i~~~iy~P~~~----~~~~Pviv~~HGGG~~~gs~~----------~~~~~~~~~~la~~g~ 139 (358)
T d1jkma_ 74 RDDVETSTETILGVDGNEITLHVFRPAGV----EGVLPGLVYTHGGGMTILTTD----------NRVHRRWCTDLAAAGS 139 (358)
T ss_dssp CCCEEEEEEEEECTTSCEEEEEEEEETTC----CSCEEEEEEECCSTTTSSCSS----------SHHHHHHHHHHHHTTC
T ss_pred CCCccEEEEEEeCCCCCEEEEEEEecCCC----CCCCCeEEEecCCeeeecccc----------ccccchHHHHHHhhhh
Confidence 34466788899999999999999999862 346999999999965433211 0111245677889999
Q ss_pred EEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhC-----CCcccEE
Q 002194 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHA-----PHLFCCG 787 (954)
Q Consensus 714 ~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~-----p~~~~a~ 787 (954)
+|+..+|+...+. .+++.++..++|+.++++|+.++ ...|++||+|+|.|+||++++.++... ...+.+.
T Consensus 140 ~VvsvdYRla~~~----~pe~~~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~ 215 (358)
T d1jkma_ 140 VVVMVDFRNAWTA----EGHHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGV 215 (358)
T ss_dssp EEEEEECCCSEET----TEECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEE
T ss_pred eeeeeeecccccc----cccCCCchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCcccccc
Confidence 9999888654221 13334577899999999999886 346889999999999999998876541 2457888
Q ss_pred EEeccCCCCCCCCCCCccc--------cchhh---hcH----HHH-----HhcCcccccC-------CCCCCEEEEEeCC
Q 002194 788 IARSGAYNRTLTPFGFQNE--------DRTLW---EAT----STY-----VEMSPFMSAN-------KLKKPILLVHGEE 840 (954)
Q Consensus 788 v~~~~~~~~~~~~~~~~~~--------~~~~~---~~~----~~~-----~~~sp~~~~~-------~~~~P~Lii~G~~ 840 (954)
++..|+.+.......+... ....+ ... ..| ...+|..... +--.|+||+||+.
T Consensus 216 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~ 295 (358)
T d1jkma_ 216 YASIPYISGGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNEL 295 (358)
T ss_dssp EEESCCCCCCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETT
T ss_pred ccccceeccccCccchhhcccccchhcccccccchhhhhhHHhhcCCccCCccCccccccccchhhccCCCCEEEEECCC
Confidence 8888877643321110000 00000 000 001 0112221110 1125999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC---C---cccHHHHHHHHHHHHHHhc
Q 002194 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA---A---RESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~---~---~~~~~~~~~~i~~fl~~~l 898 (954)
|.. .+++.+++++|+..|+++++++|+|++|+|. . .+..+...+.|..|+.++.
T Consensus 296 D~l----~~e~~~~~~~L~~aGv~v~~~~~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~~ 355 (358)
T d1jkma_ 296 DPL----RDEGIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 355 (358)
T ss_dssp CTT----HHHHHHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CCC----HHHHHHHHHHHHHCCCcEEEEEECCCccchhhhccccCCHHHHHHHHHHHHHHHHHH
Confidence 954 6789999999999999999999999999762 1 1334566778888987753
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.81 E-value=5.1e-19 Score=188.10 Aligned_cols=227 Identities=11% Similarity=0.066 Sum_probs=151.2
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (954)
....++..||..|++|.+.|++..+. +.|+||++||.... ......++..|+++||.|+.
T Consensus 5 ~~h~~~~~dg~~l~~w~~~p~~~~~~---~~~~Vvi~HG~~~~---------------~~~~~~~a~~L~~~G~~Vi~-- 64 (302)
T d1thta_ 5 IAHVLRVNNGQELHVWETPPKENVPF---KNNTILIASGFARR---------------MDHFAGLAEYLSTNGFHVFR-- 64 (302)
T ss_dssp EEEEEEETTTEEEEEEEECCCTTSCC---CSCEEEEECTTCGG---------------GGGGHHHHHHHHTTTCCEEE--
T ss_pred eeeEEEcCCCCEEEEEEecCcCCCCC---CCCEEEEeCCCcch---------------HHHHHHHHHHHHHCCCEEEE--
Confidence 44557788999999999999763332 47899999995311 11223578889999999999
Q ss_pred CCCCCCC-CCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC
Q 002194 720 TTPIIGE-GDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (954)
Q Consensus 720 ~~~~~G~-G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (954)
+|.+|+ |.+.+. .........|+.+++++|.+++ .++++|+||||||.+++.+|.. ..++++|+.+|+.+.
T Consensus 65 -~D~rGh~G~S~g~~~~~~~~~~~~dl~~vi~~l~~~~---~~~i~lvG~SmGG~ial~~A~~--~~v~~li~~~g~~~~ 138 (302)
T d1thta_ 65 -YDSLHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD--LELSFLITAVGVVNL 138 (302)
T ss_dssp -ECCCBCC--------CCCHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT--SCCSEEEEESCCSCH
T ss_pred -ecCCCCCCCCCCcccCCCHHHHHHHHHHHHHhhhccC---CceeEEEEEchHHHHHHHHhcc--cccceeEeecccccH
Confidence 555564 555432 2334567899999999998763 5689999999999999888764 358999999987652
Q ss_pred CCC-----CCCC--------cccc----chhhh---cHHHHHh-c----CcccccCCCCCCEEEEEeCCCCCCCCchHHH
Q 002194 797 TLT-----PFGF--------QNED----RTLWE---ATSTYVE-M----SPFMSANKLKKPILLVHGEEDNNSGTLTMQS 851 (954)
Q Consensus 797 ~~~-----~~~~--------~~~~----~~~~~---~~~~~~~-~----sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~ 851 (954)
... .+.+ .... ..... ..+.+.. . ++...+.++++|+|++||++|..|| ++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~V~--~~~~ 216 (302)
T d1thta_ 139 RDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVK--QEEV 216 (302)
T ss_dssp HHHHHHHHSSCGGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSC--HHHH
T ss_pred HHHHHHHHhhccchhhhhhccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEeCCCCccC--HHHH
Confidence 110 0000 0000 00000 0000000 1 2445678899999999999999999 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCCccc-HHHHHHHHHHHHHH
Q 002194 852 DRFFNALKGHGALCRLVILPFESHGYAARES-IMHVLWETDRWLQK 896 (954)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~-~~~~~~~i~~fl~~ 896 (954)
+++++.++. .++++++++|++|.+..... ...+++.+..++..
T Consensus 217 ~~l~~~i~s--~~~kl~~~~g~~H~l~e~~~~~~~~~~~~~~~~~~ 260 (302)
T d1thta_ 217 YDMLAHIRT--GHCKLYSLLGSSHDLGENLVVLRNFYQSVTKAAIA 260 (302)
T ss_dssp HHHHTTCTT--CCEEEEEETTCCSCTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCC--CCceEEEecCCCcccccChHHHHHHHHHHHHHHhh
Confidence 999987753 46899999999999853222 23355566555543
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.81 E-value=2.4e-19 Score=195.52 Aligned_cols=238 Identities=21% Similarity=0.201 Sum_probs=167.9
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEc
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (954)
.+.+.++.+||.+|.+.||+|++ .+|+|+||+.||..-.. ..... .+ ...++.|+++||+||.
T Consensus 5 ~~~v~ipmrDGv~L~~~vy~P~~-----~~~~P~il~~~pyg~~~----~~~~~---~~----~~~~~~~a~~GY~vv~- 67 (347)
T d1ju3a2 5 ASNVMVPMRDGVRLAVDLYRPDA-----DGPVPVLLVRNPYDKFD----VFAWS---TQ----STNWLEFVRDGYAVVI- 67 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEEECC-----SSCEEEEEEEESSCTTC----CHHHH---TT----SCCTHHHHHTTCEEEE-
T ss_pred EeCeEEECCCCCEEEEEEEEcCC-----CCCEEEEEEEcCCCCcc----ccCcC---cc----cHHHHHHHHCCCEEEE-
Confidence 35689999999999999999975 34699999999731100 00000 00 1135678999999999
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC
Q 002194 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (954)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (954)
.+.+|.|.|.+..........|..++++|+.+++..| .||+++|+|+||++++++|+..|+.++|+|..++..|...
T Consensus 68 --~d~RG~g~S~G~~~~~~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~ 144 (347)
T d1ju3a2 68 --QDTRGLFASEGEFVPHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYR 144 (347)
T ss_dssp --EECTTSTTCCSCCCTTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCC
T ss_pred --EeeCCccccCCccccccchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhh
Confidence 4555666665543444455678899999999999887 6999999999999999999999999999999999877532
Q ss_pred CCCCCcc-----ccchhh--------------------------------------------------------------
Q 002194 799 TPFGFQN-----EDRTLW-------------------------------------------------------------- 811 (954)
Q Consensus 799 ~~~~~~~-----~~~~~~-------------------------------------------------------------- 811 (954)
..+.+.. .....|
T Consensus 145 ~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (347)
T d1ju3a2 145 APWYGPGGALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDH 224 (347)
T ss_dssp CCCSCTTCCCCHHHHHHHHHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTC
T ss_pred hhhhhcCCccchhhHHHHHHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhc
Confidence 1111000 000000
Q ss_pred -hcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC------------
Q 002194 812 -EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA------------ 878 (954)
Q Consensus 812 -~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~------------ 878 (954)
...+.+...++...+.++++|+|+++|..|.. ...+.++|++++. +.+.++++-|. +|...
T Consensus 225 ~~~~~~w~~~~~~~~~~~i~vP~L~i~G~~D~~----~~~~~~~~~~~~~-~~~~~liigpw-~H~~~~~~~~~~~~g~~ 298 (347)
T d1ju3a2 225 PDNDESWQSISLFERLGGLATPALITAGWYDGF----VGESLRTFVAVKD-NADARLVVGPW-SHSNLTGRNADRKFGIA 298 (347)
T ss_dssp CSCCHHHHTTCCHHHHTTCCCCEEEEEEEECTT----HHHHHHHHHHHTT-TSCEEEEEEEE-ESSCCSSEETTEECCGG
T ss_pred ccchhhhhcCCHHHHhhcCCCCEEEeccccCCC----cchhHHHHHHhhc-cCCceEEEcCc-cccCcccccCCCCCCcc
Confidence 00123444567778899999999999999976 4457888888864 46788888886 55431
Q ss_pred CcccHHHHHHHHHHHHHHhcccCC
Q 002194 879 ARESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 879 ~~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
......+....+++||++||+...
T Consensus 299 ~~~~~~~~~~~~l~wfD~~LKg~~ 322 (347)
T d1ju3a2 299 ATYPIQEATTMHKAFFDRHLRGET 322 (347)
T ss_dssp GSCCHHHHHHHHHHHHHHHTSCCT
T ss_pred ccccHHHHHHHHHHHHHHHhCCCC
Confidence 112356677788999999998654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.80 E-value=2e-18 Score=181.70 Aligned_cols=258 Identities=12% Similarity=0.057 Sum_probs=169.1
Q ss_pred eeecCC--CCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCC
Q 002194 194 VTWSQD--GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (954)
Q Consensus 194 ~~wSPD--G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (954)
..+||| |++|+|++ ..+||++|+++|+.++||..+.. ...+.|||||+.|+|+.......
T Consensus 4 ~~~sPdi~G~~v~f~~----------~~dl~~~d~~~g~~~~Lt~~~~~-----~~~p~~SPDG~~iaf~~~~~~~~--- 65 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVC----------CDDLWEHDLKSGSTRKIVSNLGV-----INNARFFPDGRKIAIRVMRGSSL--- 65 (281)
T ss_dssp CCEEEEEETTEEEEEE----------TTEEEEEETTTCCEEEEECSSSE-----EEEEEECTTSSEEEEEEEESTTC---
T ss_pred cccCCCCCCCEEEEEe----------CCcEEEEECCCCCEEEEecCCCc-----ccCEEECCCCCEEEEEEeeCCCC---
Confidence 467999 99999986 34799999999999999987664 56899999999999982211000
Q ss_pred CCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-c-------cccccccCCC
Q 002194 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-A-------VYTSLDPSPD 342 (954)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~-------~~~~~~~SpD 342 (954)
...+||++++ +|+.++|+.. . ....+.||||
T Consensus 66 ----------------------------------------~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spd 105 (281)
T d1k32a2 66 ----------------------------------------NTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPD 105 (281)
T ss_dssp ----------------------------------------CEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTT
T ss_pred ----------------------------------------CceEEEEEEecCCceEEeeecCCCccCccccccccccCCC
Confidence 2356999999 8888998765 2 2245789999
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~ 422 (954)
|+.|+|+....+... ...+++++.+++..+..... .....|.+|+..+++.......
T Consensus 106 g~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 162 (281)
T d1k32a2 106 GNLIISTDAMQPFSS-------MTCLYRVENDGINFVPLNLG----------------PATHILFADGRRVIGRNTFELP 162 (281)
T ss_dssp CCEEEEECTTSSSTT-------CCEEEEEEGGGTEEEECCSC----------------SCSEEEEETTEEEEEESCSCCT
T ss_pred CCEEEEEEccCCCcc-------ceeeeeecCCCceeEEecCC----------------ccceeeecCCCeEEEeeccccc
Confidence 999999875543221 22466777777766554432 1235688888877776322221
Q ss_pred CCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCC
Q 002194 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (954)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 502 (954)
...... ........... .......++........+.++++ .+++.....+ ..+||.++++++ +.+.++...
T Consensus 163 ~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~l~~~d~~g~--~~~~lt~~~ 233 (281)
T d1k32a2 163 HWKGYR-GGTRGKIWIEV---NSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDG-FGQIYSTDLDGK--DLRKHTSFT 233 (281)
T ss_dssp TSTTCC-STTCCEEEEEE---ETTEEEEEECCSSCCEEEEEETT--EEEEEECTTS-SCEEEEEETTSC--SCEECCCCC
T ss_pred eeeeec-cCCcceeeeec---cccceeeccCCccccceeeeecc--ccceeccccc-ccceEEEeCCCC--ceEEeecCC
Confidence 111111 11112222221 23334444555555556777765 4566655443 478999999985 556666543
Q ss_pred CCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccC
Q 002194 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
... ...|||||+.|+|... ..||++|+++|+.++|...+
T Consensus 234 ~~~--------~~~~SpDG~~I~f~~~----------------------~~l~~~d~~~g~~~~i~~~~ 272 (281)
T d1k32a2 234 DYY--------PRHLNTDGRRILFSKG----------------------GSIYIFNPDTEKIEKIEIGD 272 (281)
T ss_dssp SSC--------EEEEEESSSCEEEEET----------------------TEEEEECTTTCCEEECCCCC
T ss_pred Ccc--------cccCcCCCCEEEEEeC----------------------CEEEEEECCCCCEEEeccCC
Confidence 211 1479999999999761 24999999999999997655
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.80 E-value=5.6e-18 Score=170.53 Aligned_cols=211 Identities=17% Similarity=0.170 Sum_probs=162.0
Q ss_pred EEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCC
Q 002194 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (954)
Q Consensus 642 ~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~ 721 (954)
|.+++.+| +|++++..|+. .+.|++|++||.|...+.. .+..-...++.|+++||.|+. +
T Consensus 3 v~i~g~~G-~Le~~~~~~~~------~~~~~~l~~Hp~p~~GG~~----------~~~~~~~~a~~l~~~G~~~lr---f 62 (218)
T d2i3da1 3 VIFNGPAG-RLEGRYQPSKE------KSAPIAIILHPHPQFGGTM----------NNQIVYQLFYLFQKRGFTTLR---F 62 (218)
T ss_dssp EEEEETTE-EEEEEEECCSS------TTCCEEEEECCCGGGTCCT----------TSHHHHHHHHHHHHTTCEEEE---E
T ss_pred EEEeCCCc-cEEEEEeCCCC------CCCCEEEEECCCcCcCCcC----------CcHHHHHHHHHHHhcCeeEEE---E
Confidence 66888888 79998764432 2368999999976433221 111122456778899999999 7
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCC
Q 002194 722 PIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF 801 (954)
Q Consensus 722 ~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~ 801 (954)
+++|.|.+.+.........+|..++++|+..+... ..++.++|+|+||.+++.++.+.+ ...+++++++.....
T Consensus 63 n~RG~g~S~G~~~~~~~e~~d~~aa~~~~~~~~~~-~~~~~~~g~S~G~~~a~~~a~~~~-~~~~~~~~~~~~~~~---- 136 (218)
T d2i3da1 63 NFRSIGRSQGEFDHGAGELSDAASALDWVQSLHPD-SKSCWVAGYSFGAWIGMQLLMRRP-EIEGFMSIAPQPNTY---- 136 (218)
T ss_dssp CCTTSTTCCSCCCSSHHHHHHHHHHHHHHHHHCTT-CCCEEEEEETHHHHHHHHHHHHCT-TEEEEEEESCCTTTS----
T ss_pred ecCccCCCccccccchhHHHHHHHHHhhhhccccc-ccceeEEeeehHHHHHHHHHHhhc-cccceeecccccccc----
Confidence 77888888777666778899999999999988643 347899999999999999998884 567777777653311
Q ss_pred CCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhC-CCcEEEEEeCCCCCcCCCc
Q 002194 802 GFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH-GALCRLVILPFESHGYAAR 880 (954)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~H~~~~~ 880 (954)
....+..+.+|.|++||+.|.+++ ..+..++++.++.. +..++++++||++|.|.
T Consensus 137 --------------------~~~~~~~~~~p~l~i~g~~D~~~~--~~~~~~l~~~~~~~~~~~~~~~vi~gAdHfF~-- 192 (218)
T d2i3da1 137 --------------------DFSFLAPCPSSGLIINGDADKVAP--EKDVNGLVEKLKTQKGILITHRTLPGANHFFN-- 192 (218)
T ss_dssp --------------------CCTTCTTCCSCEEEEEETTCSSSC--HHHHHHHHHHHTTSTTCCEEEEEETTCCTTCT--
T ss_pred --------------------chhhccccCCCceeeecccceecC--hHHHHHHHHHHhhccCCCccEEEeCCCCCCCc--
Confidence 112234456899999999999999 99999999999864 56789999999999885
Q ss_pred ccHHHHHHHHHHHHHHhcccCC
Q 002194 881 ESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 881 ~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
.....+.+.+.+||+++|.+..
T Consensus 193 g~~~~l~~~v~~~l~~~l~~~~ 214 (218)
T d2i3da1 193 GKVDELMGECEDYLDRRLNGEL 214 (218)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHHHhcCCCC
Confidence 3457788999999999996543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.80 E-value=6.8e-18 Score=177.60 Aligned_cols=262 Identities=13% Similarity=0.106 Sum_probs=166.4
Q ss_pred CceecCC--CCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 113 ALSFSPQ--RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 113 ~~~~SPD--G~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
.+.+||| |++|||++.+ +||++++.+ ++.++||..+ ..
T Consensus 3 ~~~~sPdi~G~~v~f~~~~----------------------------------dl~~~d~~~----g~~~~Lt~~~--~~ 42 (281)
T d1k32a2 3 NLLLNPDIHGDRIIFVCCD----------------------------------DLWEHDLKS----GSTRKIVSNL--GV 42 (281)
T ss_dssp CCCEEEEEETTEEEEEETT----------------------------------EEEEEETTT----CCEEEEECSS--SE
T ss_pred CcccCCCCCCCEEEEEeCC----------------------------------cEEEEECCC----CCEEEEecCC--Cc
Confidence 4578999 9999999874 899999954 7788997532 46
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc--cccccceeEecCCeEEEEEecCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL--NAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~--~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
+..|+|||||++|||+...+ ......+||++++++|+.++||..+.... ......+.|+|||+.|+|+.......
T Consensus 43 ~~~p~~SPDG~~iaf~~~~~---~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 119 (281)
T d1k32a2 43 INNARFFPDGRKIAIRVMRG---SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFS 119 (281)
T ss_dssp EEEEEECTTSSEEEEEEEES---TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSST
T ss_pred ccCEEECCCCCEEEEEEeeC---CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCc
Confidence 88999999999999987633 23345689999999999999987654211 11134678999999999872111000
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCccccccccCCCCcEEE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYIL 347 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~ 347 (954)
....++.++. ++..+..... .....|++||+.++
T Consensus 120 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 154 (281)
T d1k32a2 120 -------------------------------------------SMTCLYRVENDGINFVPLNLG--PATHILFADGRRVI 154 (281)
T ss_dssp -------------------------------------------TCCEEEEEEGGGTEEEECCSC--SCSEEEEETTEEEE
T ss_pred -------------------------------------------cceeeeeecCCCceeEEecCC--ccceeeecCCCeEE
Confidence 1223556676 4555444432 23456788888888
Q ss_pred EEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
+.............. ......+..........++.... ....+.|++|. +++..+
T Consensus 155 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~--~~~~~~--------- 209 (281)
T d1k32a2 155 GRNTFELPHWKGYRG-GTRGKIWIEVNSGAFKKIVDMST-------------HVSSPVIVGHR--IYFITD--------- 209 (281)
T ss_dssp EESCSCCTTSTTCCS-TTCCEEEEEEETTEEEEEECCSS-------------CCEEEEEETTE--EEEEEC---------
T ss_pred Eeeccccceeeeecc-CCcceeeeeccccceeeccCCcc-------------ccceeeeeccc--cceecc---------
Confidence 876544322111111 11122333333444444433221 12345566553 444311
Q ss_pred cccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002194 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 499 (954)
.....+||++++ ++++.++|+.... .....|||||+.|+|... .+||+++++++ +.+.+.
T Consensus 210 -~~~~~~l~~~d~---~g~~~~~lt~~~~-~~~~~~SpDG~~I~f~~~-----~~l~~~d~~~g--~~~~i~ 269 (281)
T d1k32a2 210 -IDGFGQIYSTDL---DGKDLRKHTSFTD-YYPRHLNTDGRRILFSKG-----GSIYIFNPDTE--KIEKIE 269 (281)
T ss_dssp -TTSSCEEEEEET---TSCSCEECCCCCS-SCEEEEEESSSCEEEEET-----TEEEEECTTTC--CEEECC
T ss_pred -cccccceEEEeC---CCCceEEeecCCC-cccccCcCCCCEEEEEeC-----CEEEEEECCCC--CEEEec
Confidence 134568999996 8888888876532 234579999999999752 36999999986 445543
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.79 E-value=5.5e-19 Score=188.93 Aligned_cols=225 Identities=16% Similarity=0.093 Sum_probs=156.1
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH-HCCcEEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAIL 716 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~ 716 (954)
..+.+++++.+| .|.+.+|.|+. +.|+|||+|||.|..++. .. ...+...++ +.||+|+
T Consensus 55 ~~~~~~i~~~~g-~i~~~iy~P~~-------~~P~il~iHGGg~~~g~~--------~~----~~~~~~~l~~~~g~~Vv 114 (311)
T d1jjia_ 55 RVEDRTIKGRNG-DIRVRVYQQKP-------DSPVLVYYHGGGFVICSI--------ES----HDALCRRIARLSNSTVV 114 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEEESSS-------SEEEEEEECCSTTTSCCT--------GG----GHHHHHHHHHHHTSEEE
T ss_pred eEEEEEEeCCCC-cEEEEEEcCCC-------CceEEEEEcCCCCccCCh--------hh----hhhhhhhhhhcCCcEEE
Confidence 467788888777 79999999953 369999999996544322 11 123444554 4699999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC----CCcccEEEE
Q 002194 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA----PHLFCCGIA 789 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~----p~~~~a~v~ 789 (954)
.++|+...+ ..++..++|+.++++|+.++ ..+|++||+|+|+|+||++++.++... .....+.++
T Consensus 115 ~v~Yrlap~--------~~~p~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l 186 (311)
T d1jjia_ 115 SVDYRLAPE--------HKFPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQIL 186 (311)
T ss_dssp EEECCCTTT--------SCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred Eeccccccc--------cccchhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeee
Confidence 988864433 33467788999999999886 368999999999999999998876543 245788888
Q ss_pred eccCCCCCCCCCCCc-------cccchhhh--------cH--HHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHH
Q 002194 790 RSGAYNRTLTPFGFQ-------NEDRTLWE--------AT--STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSD 852 (954)
Q Consensus 790 ~~~~~~~~~~~~~~~-------~~~~~~~~--------~~--~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~ 852 (954)
++|..+......... ......+. .. ......+|+....+...|+||+||+.|.. .+++.
T Consensus 187 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~l----~d~~~ 262 (311)
T d1jjia_ 187 IYPVVNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIITAEYDPL----RDEGE 262 (311)
T ss_dssp ESCCCCSSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTCCCEEEEEEEECTT----HHHHH
T ss_pred ecceeeeccCcccccccccccccccHHHhhhhhhhcccccccccccccchhhcccccCCCEEEEEcCCCCC----hHHHH
Confidence 888876443211000 00000000 00 00112366655555567999999999954 67899
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCcCCCc----ccHHHHHHHHHHHH
Q 002194 853 RFFNALKGHGALCRLVILPFESHGYAAR----ESIMHVLWETDRWL 894 (954)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~fl 894 (954)
+++++|++.|+++++++|+|++|+|... +...+.+++|.+||
T Consensus 263 ~~~~~L~~~Gv~v~~~~~~g~~H~F~~~~~~~~~a~~a~~~i~~fl 308 (311)
T d1jjia_ 263 VFGQMLRRAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALL 308 (311)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEECCCCCccccCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999987422 23456677787776
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.78 E-value=1.2e-18 Score=179.97 Aligned_cols=186 Identities=16% Similarity=0.144 Sum_probs=140.7
Q ss_pred EEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc
Q 002194 653 SATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN 732 (954)
Q Consensus 653 ~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~ 732 (954)
..-||+|++ .+.|+||++|||+|..++.. .+ ...+..|+++||+|+.++|+...
T Consensus 51 ~lDiy~P~~------~~~P~vv~iHGG~w~~g~~~--------~~----~~~a~~l~~~G~~Vv~~~YRl~p-------- 104 (261)
T d2pbla1 51 KFDLFLPEG------TPVGLFVFVHGGYWMAFDKS--------SW----SHLAVGALSKGWAVAMPSYELCP-------- 104 (261)
T ss_dssp EEEEECCSS------SCSEEEEEECCSTTTSCCGG--------GC----GGGGHHHHHTTEEEEEECCCCTT--------
T ss_pred EEEEeccCC------CCCCeEEEECCCCCccCChh--------Hh----hhHHHHHhcCCceeecccccccc--------
Confidence 445788864 25799999999976543321 11 12466789999999998886332
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC------CcccEEEEeccCCCCCCCCCCCccc
Q 002194 733 DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP------HLFCCGIARSGAYNRTLTPFGFQNE 806 (954)
Q Consensus 733 ~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p------~~~~a~v~~~~~~~~~~~~~~~~~~ 806 (954)
...++..++|+.++++|+.++. ++||+|+|||+||++|++++.... ..+++++.++|+++...... ...
T Consensus 105 ~~~~p~~~~d~~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 179 (261)
T d2pbla1 105 EVRISEITQQISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLR--TSM 179 (261)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGG--STT
T ss_pred cccCchhHHHHHHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchhhh--hhh
Confidence 2335778999999999999874 479999999999999988876542 35789999999887543211 111
Q ss_pred cchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 002194 807 DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876 (954)
Q Consensus 807 ~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 876 (954)
........+.+...||+.++.+..+|+||+||++|..++ ..++++++++|+ ++.+.+|+++|.
T Consensus 180 ~~~~~~~~~~~~~~SP~~~~~~~~~P~li~~G~~D~~~~--~~qs~~~~~~l~-----~~~~~~~~~~HF 242 (261)
T d2pbla1 180 NEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAERPAF--LDQAIWLVEAWD-----ADHVIAFEKHHF 242 (261)
T ss_dssp HHHHCCCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHH--HHHHHHHHHHHT-----CEEEEETTCCTT
T ss_pred cccccCCHHHHHHhCchhhcccCCCeEEEEEecCCCchH--HHHHHHHHHHhC-----CCceEeCCCCch
Confidence 222334567788899999999999999999999999877 899999999985 467889999993
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.78 E-value=2e-18 Score=189.63 Aligned_cols=251 Identities=15% Similarity=0.152 Sum_probs=161.8
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
..+.+.++.+||++|.+.||+|++ .+++|+||+.|+..... ..................+.|+++||+|+.
T Consensus 23 ~~~~v~i~~rDG~~L~~~v~~P~~-----~~~~P~il~~~pYg~~~----~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~ 93 (381)
T d1mpxa2 23 IKREVMIPMRDGVKLHTVIVLPKG-----AKNAPIVLTRTPYDASG----RTERLASPHMKDLLSAGDDVFVEGGYIRVF 93 (381)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETT-----CCSEEEEEEEESSCHHH----HTCSSCCSSHHHHSCGGGHHHHHTTCEEEE
T ss_pred eEEEEEEECCCCCEEEEEEEEeCC-----CCCccEEEEEccCCCCC----cccccccccccccchhHHHHHHhCCCEEEE
Confidence 457899999999999999999976 34699999998621000 000000000011112345789999999999
Q ss_pred cCCCCCCCCCCccc--------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEE
Q 002194 718 GPTTPIIGEGDEEA--------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (954)
Q Consensus 718 ~~~~~~~G~G~~~~--------~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (954)
.+.+|..+.+.... ........+.|+.++++|+.++..++..||+++|+|+||++++++|+..|+.++|+|+
T Consensus 94 ~d~RG~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a~v~ 173 (381)
T d1mpxa2 94 QDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVP 173 (381)
T ss_dssp EECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEEEEE
T ss_pred EecCccCCCCCceeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccceeee
Confidence 66655433221110 0111234689999999999999888889999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCc-----cc---------------------cchhhh-------------------------------
Q 002194 790 RSGAYNRTLTPFGFQ-----NE---------------------DRTLWE------------------------------- 812 (954)
Q Consensus 790 ~~~~~~~~~~~~~~~-----~~---------------------~~~~~~------------------------------- 812 (954)
.+|+.|.......+. .. ....+.
T Consensus 174 ~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (381)
T d1mpxa2 174 ESPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAA 253 (381)
T ss_dssp ESCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCS
T ss_pred eccccccccccccccCchhhhccHHHHHhhhhhccccchhhhhhhhhHHHHHhcccccccchhhccccchHHHHHhhCCC
Confidence 999887532211100 00 000000
Q ss_pred cHHHHHhcCccc--ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHh---CCCcEEEEEeCCCCCcC----------
Q 002194 813 ATSTYVEMSPFM--SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG---HGALCRLVILPFESHGY---------- 877 (954)
Q Consensus 813 ~~~~~~~~sp~~--~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~---~g~~~~~~~~~~~~H~~---------- 877 (954)
....+...++.. ...++++|+|+++|..|..+. ..+...++.++. .+.+.++++-|. +|..
T Consensus 254 ~d~~w~~~s~~~~~~~~~i~vP~l~i~G~~d~~~~---~~~~~~~~~~~~~~~~~~~~~LviGPw-~H~~~~~~~~~~~~ 329 (381)
T d1mpxa2 254 YDAFWQEQALDKVMARTPLKVPTMWLQGLWDQEDM---WGAIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSALGA 329 (381)
T ss_dssp SCHHHHTTCHHHHHHTSCCCSCEEEEEETTCSSCS---SHHHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSEETT
T ss_pred ccchhhhcCchhhhhhccccCceEEEeccccCCcc---ccHHHHHHHHHHhccccCCceEEEecC-cCCCCccCCCcCCc
Confidence 001112223322 345688999999999998764 446666666654 357889999997 6742
Q ss_pred ---CCcccHHHHHHHHHHHHHHhcccC
Q 002194 878 ---AARESIMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 878 ---~~~~~~~~~~~~i~~fl~~~l~~~ 901 (954)
............+++||++||+..
T Consensus 330 ~~~~~~~~~~~~~~~~l~wFD~~LKg~ 356 (381)
T d1mpxa2 330 LNFEGDTARQFRHDVLRPFFDQYLVDG 356 (381)
T ss_dssp EECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred cccccchhhhhHHHHHHHHHHHHhCCC
Confidence 111123344556799999999864
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=4e-18 Score=174.86 Aligned_cols=220 Identities=19% Similarity=0.153 Sum_probs=141.9
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
+.|++++ .| +......|++ +.|+||++||...... .+ ...+..|+++||.|++
T Consensus 4 ~~~~~~l---~g--~~~~~~~p~~-------~~~~vl~lHG~~~~~~-----------~~----~~~~~~la~~G~~V~~ 56 (238)
T d1ufoa_ 4 RTERLTL---AG--LSVLARIPEA-------PKALLLALHGLQGSKE-----------HI----LALLPGYAERGFLLLA 56 (238)
T ss_dssp EEEEEEE---TT--EEEEEEEESS-------CCEEEEEECCTTCCHH-----------HH----HHTSTTTGGGTEEEEE
T ss_pred EEEEEEE---CC--EEEEecCCCC-------CCeEEEEeCCCCCCHH-----------HH----HHHHHHHHHCCCEEEE
Confidence 4566655 45 3444555642 3699999999632110 01 1234457889999999
Q ss_pred cCCCCCCCCCCcccc------hhhHHH----HHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEE
Q 002194 718 GPTTPIIGEGDEEAN------DRFVEQ----LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~------~~~~~~----~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (954)
++ ..|+|.+... ..+... ...++.++..++...+.+++++++++|+|+||++++.+++++|+ ++++
T Consensus 57 ~D---~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~-~~~~ 132 (238)
T d1ufoa_ 57 FD---APRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFR-PRGV 132 (238)
T ss_dssp CC---CTTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEETHHHHHHHHHHHTTCC-CSCE
T ss_pred ec---CCCCCCCcccccccccchhhhhhhhhHHhHHHHHHHHhhhccccCCceEEEEEecccHHHHHHHHhcCcc-hhhe
Confidence 44 4555554221 112222 22333333344444556788899999999999999999999976 5555
Q ss_pred EEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCC-CCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCC--c
Q 002194 788 IARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK-LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA--L 864 (954)
Q Consensus 788 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~--~ 864 (954)
++..+........... .........+.+.++..+..+ .++|+||+||++|..|| ++++.+++++|+..+. .
T Consensus 133 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~ 206 (238)
T d1ufoa_ 133 LAFIGSGFPMKLPQGQ----VVEDPGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVP--LARMEKTLEALRPHYPEGR 206 (238)
T ss_dssp EEESCCSSCCCCCTTC----CCCCHHHHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTT--HHHHHHHHHHHGGGCTTCC
T ss_pred eeeeeecccccccccc----ccccccccchhhhhhhhhhhhhcCCCeEEEEcCCCCccC--HHHHHHHHHHHHhcCCCce
Confidence 5555543322111111 111122233445566555544 46899999999999999 9999999999998875 5
Q ss_pred EEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 865 CRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 865 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
+++..+||++|.+. .+.++.+.+||.+||.
T Consensus 207 ~~~~~~~g~gH~~~-----~~~~~~~~~f~~~~l~ 236 (238)
T d1ufoa_ 207 LARFVEEGAGHTLT-----PLMARVGLAFLEHWLE 236 (238)
T ss_dssp EEEEEETTCCSSCC-----HHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCccC-----HHHHHHHHHHHHHHhc
Confidence 78899999999985 3456788899999985
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.77 E-value=1.7e-17 Score=165.44 Aligned_cols=190 Identities=15% Similarity=0.105 Sum_probs=136.9
Q ss_pred EEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCc----c
Q 002194 655 TLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE----E 730 (954)
Q Consensus 655 ~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~----~ 730 (954)
.++.|.. +.+.|+||++||+... ...+ ...+.. ...++.|++++.....+.+.. .
T Consensus 4 ~i~~~~~-----~~~~P~vi~lHG~g~~-----------~~~~----~~~~~~-l~~~~~vv~p~~~~~~~~~~~~~~~~ 62 (202)
T d2h1ia1 4 HVFQKGK-----DTSKPVLLLLHGTGGN-----------ELDL----LPLAEI-VDSEASVLSVRGNVLENGMPRFFRRL 62 (202)
T ss_dssp EEEECCS-----CTTSCEEEEECCTTCC-----------TTTT----HHHHHH-HHTTSCEEEECCSEEETTEEESSCEE
T ss_pred ccCCCCC-----CCCCCEEEEECCCCCC-----------HHHH----HHHHHH-hccCCceeeecccccCCCCccccccC
Confidence 3566643 3457999999995311 1112 123433 446888887544211111111 0
Q ss_pred c----chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccc
Q 002194 731 A----NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE 806 (954)
Q Consensus 731 ~----~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~ 806 (954)
. .........+++...++++.++..+|++||+++|+|+||.+++.+++++|+.++++++.+|.....
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~--------- 133 (202)
T d2h1ia1 63 AEGIFDEEDLIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRR--------- 133 (202)
T ss_dssp ETTEECHHHHHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCS---------
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCcc---------
Confidence 0 111233456778888888888888999999999999999999999999999999999999864311
Q ss_pred cchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHH
Q 002194 807 DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886 (954)
Q Consensus 807 ~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~ 886 (954)
+.........|++++||++|.+|| ++++++++++|+..|.+++++.||+ +|.+. .+.
T Consensus 134 ---------------~~~~~~~~~~~~~i~~G~~D~~vp--~~~~~~~~~~l~~~g~~~~~~~~~g-gH~~~-----~~~ 190 (202)
T d2h1ia1 134 ---------------GMQLANLAGKSVFIAAGTNDPICS--SAESEELKVLLENANANVTMHWENR-GHQLT-----MGE 190 (202)
T ss_dssp ---------------SCCCCCCTTCEEEEEEESSCSSSC--HHHHHHHHHHHHTTTCEEEEEEESS-TTSCC-----HHH
T ss_pred ---------------cccccccccchhhcccccCCCccC--HHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHH
Confidence 111223346799999999999999 9999999999999999999999997 89875 355
Q ss_pred HHHHHHHHHHh
Q 002194 887 LWETDRWLQKY 897 (954)
Q Consensus 887 ~~~i~~fl~~~ 897 (954)
++.+.+||++.
T Consensus 191 ~~~~~~wl~k~ 201 (202)
T d2h1ia1 191 VEKAKEWYDKA 201 (202)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 78899999875
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.77 E-value=3.5e-18 Score=186.44 Aligned_cols=299 Identities=10% Similarity=0.023 Sum_probs=190.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++|++++.+ ++ ..|++|++.+ ++.+++... ..
T Consensus 44 ~v~~~~~spDg~~l~~~~~~----------------------~g---------~~v~v~d~~~----~~~~~~~~~--~~ 86 (360)
T d1k32a3 44 RIRYVRRGGDTKVAFIHGTR----------------------EG---------DFLGIYDYRT----GKAEKFEEN--LG 86 (360)
T ss_dssp CEEEEEECSSSEEEEEEEET----------------------TE---------EEEEEEETTT----CCEEECCCC--CC
T ss_pred CEEEEEECCCCCEEEEEEcC----------------------CC---------CEEEEEECCC----CcEEEeeCC--Cc
Confidence 56789999999999998864 10 2589999854 566666542 24
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..++|||||++|++... ...++++++++++...+....... +..++|+|||++|+++.......
T Consensus 87 ~v~~~~~spdg~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~spdg~~la~~~~~~~~~- 152 (360)
T d1k32a3 87 NVFAMGVDRNGKFAVVAND---------RFEIMTVDLETGKPTVIERSREAM----ITDFTISDNSRFIAYGFPLKHGE- 152 (360)
T ss_dssp SEEEEEECTTSSEEEEEET---------TSEEEEEETTTCCEEEEEECSSSC----CCCEEECTTSCEEEEEEEECSST-
T ss_pred eEEeeeecccccccceecc---------ccccccccccccceeeeeeccccc----ccchhhccceeeeeeeccccccc-
Confidence 6888999999999999763 668999999998887776554432 56899999999999873221111
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~ 347 (954)
........++++++ +++...++.. .....+.|||||++|+
T Consensus 153 --------------------------------------~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 194 (360)
T d1k32a3 153 --------------------------------------TDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLY 194 (360)
T ss_dssp --------------------------------------TCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEE
T ss_pred --------------------------------------eeeccccceeeeccccCceeeecccccccccccccCCCCEEE
Confidence 00013345778888 7777777776 6677889999999999
Q ss_pred EEeecCCcccccccCCCCcceEEEeccCc--------eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGI--------FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g~--------~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
+.+.+. .+.+|+.... +...+... ......+.|++|++.++...
T Consensus 195 ~~s~~~-------------~~~~~d~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~s~~~~~~~~~~-- 246 (360)
T d1k32a3 195 YLSYRS-------------LDPSPDRVVLNFSFEVVSKPFVIPLI-------------PGSPNPTKLVPRSMTSEAGE-- 246 (360)
T ss_dssp EEESCC-------------CCCEECSSSSCEECCSCBEEEEEESS-------------TTCCCGGGCCCGGGSCCCCC--
T ss_pred EEeCCC-------------ceEcccccccceeeccccceEEEecc-------------cCccccceECCCcCcccccc--
Confidence 988543 3344544321 11111111 12334567899888654320
Q ss_pred ccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002194 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 499 (954)
.+. ......++.+++ .++..+.+...+.....+.+++++....+..... ....|+++|+.++ +...+.
T Consensus 247 ~~~------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~--~~~~~~ 314 (360)
T d1k32a3 247 YDL------NDMYKRSSPINV---DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP-EKGVLLKYDVKTR--KVTEVK 314 (360)
T ss_dssp CCC------TTGGGGCEECSC---CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCC-CCEEEEEEETTTC--CEEEEE
T ss_pred eee------cccccceeeccc---CcCceeEeeecCCCceEEEEEecCCCeeEEEecC-CCCEEEEEECCCC--eEEEec
Confidence 000 011234666654 5566666665555555555655554432222221 1257888898875 333333
Q ss_pred cCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEe
Q 002194 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (954)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 568 (954)
.. +.. ++|||||++|++... ...|++||+++++..+..
T Consensus 315 ~~----v~~------~~~SpDG~~l~~~~~---------------------Dg~i~v~d~~~~~~~~~~ 352 (360)
T d1k32a3 315 NN----LTD------LRLSADRKTVMVRKD---------------------DGKIYTFPLEKPEDERTV 352 (360)
T ss_dssp EE----EEE------EEECTTSCEEEEEET---------------------TSCEEEEESSCTTSCEEC
T ss_pred CC----cCE------EEECCCCCEEEEEEC---------------------CCeEEEEECCCCCcceEE
Confidence 21 222 789999999998772 224999999888655443
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.76 E-value=4.4e-18 Score=182.02 Aligned_cols=233 Identities=17% Similarity=0.164 Sum_probs=153.9
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC-cEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG-FAI 715 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G-~~V 715 (954)
...+.++++. +|.+|.+.+|+|++. ++++|+||++|||.|..+.. .. ...+...++.+| +.|
T Consensus 44 ~~~~~~~~~~-~g~~i~~~~y~P~~~----~~~~Pvvv~iHGGg~~~g~~--------~~----~~~~~~~~a~~~~~~v 106 (308)
T d1u4na_ 44 AEVREFDMDL-PGRTLKVRMYRPEGV----EPPYPALVYYHGGGWVVGDL--------ET----HDPVCRVLAKDGRAVV 106 (308)
T ss_dssp SEEEEEEEEE-TTEEEEEEEEECTTC----CSSEEEEEEECCSTTTSCCT--------TT----THHHHHHHHHHHTSEE
T ss_pred CcEEEEEEec-CCceEEEEEEecccc----CCCCCEEEEEecCeeeeecc--------cc----ccchhhhhhhcccccc
Confidence 3466777775 789999999999863 33599999999996543321 11 224556677766 456
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhCCC----cccEEE
Q 002194 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGI 788 (954)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v 788 (954)
+..+|+-. +...+....+|+..+++|+.++. .+|++||+++|+|+||++++.++....+ .+.+.+
T Consensus 107 ~~v~Yrl~--------p~~~~p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~ 178 (308)
T d1u4na_ 107 FSVDYRLA--------PEHKFPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQL 178 (308)
T ss_dssp EEECCCCT--------TTSCTTHHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEE
T ss_pred cccccccc--------cccccccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCccccc
Confidence 66666422 23344677889999999998763 5899999999999999999998876432 345555
Q ss_pred EeccCCCCCCCCCCC----------ccccchhhh--------cHHHHHhcCcccccCCCC-CCEEEEEeCCCCCCCCchH
Q 002194 789 ARSGAYNRTLTPFGF----------QNEDRTLWE--------ATSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTM 849 (954)
Q Consensus 789 ~~~~~~~~~~~~~~~----------~~~~~~~~~--------~~~~~~~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~ 849 (954)
...+..+........ .......+. ........++....+... .|+||+||+.|.. .+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~d~~~~Pp~li~~g~~D~l----~~ 254 (308)
T d1u4na_ 179 LIYPSTGYDPAHPPASIEENAEGYLLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPL----RD 254 (308)
T ss_dssp EESCCCCCCTTSCCHHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTCCCEEEEEEEECTT----HH
T ss_pred ccccccccccccccchhhhccccccccchhhhhhhhcccCccccccchhhhhhhchhhcCCCCeeEEecCcCCc----hH
Confidence 666554422211000 000000000 000001112222222222 4899999999954 57
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCCcCCCc----ccHHHHHHHHHHHHHHhc
Q 002194 850 QSDRFFNALKGHGALCRLVILPFESHGYAAR----ESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 850 ~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~fl~~~l 898 (954)
++..++++|++.|+++++++|||++|+|... ....+.++++.+||++.|
T Consensus 255 ~~~~~~~~L~~~G~~v~~~~~~g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 255 VGKLYAEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999987422 234578888999998876
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.76 E-value=2.6e-17 Score=182.11 Aligned_cols=253 Identities=19% Similarity=0.203 Sum_probs=172.7
Q ss_pred ceEEEEEEcC-----CCe--EEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcc-------------------------
Q 002194 638 QKELIKYQRK-----DGV--QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKD------------------------- 685 (954)
Q Consensus 638 ~~~~~~~~~~-----~g~--~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~------------------------- 685 (954)
-.|.+.+++. ||. .|.+.||+|+. .+++|+|+..+.-......
T Consensus 22 ~re~v~v~~~~dt~rDG~~d~l~~di~rP~~-----~~k~Pvil~~sPY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (405)
T d1lnsa3 22 EREVLWVESPVDSEQRGENDLIKIQIIRPKS-----TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVE 96 (405)
T ss_dssp EEEEEEEECSCCTTCSSSCCEEEEEEEECCC-----SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCC
T ss_pred eEeEEEEeCCCCCCCCCCEeEEEEEEEccCC-----CCCceEEEEeCCcCCCCccccccccccccccccccccccccccc
Confidence 3466666544 898 69999999975 2359999976652110000
Q ss_pred ------------cCccccCCC-CCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHHHHH
Q 002194 686 ------------AAGQVRGSP-NEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVV 751 (954)
Q Consensus 686 ------------~~~~~~~~~-~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~~l~ 751 (954)
....+...+ .....+.....++|+++||+|+. .+.+|.|.|.+.. .+...+.+|..++|+||.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~---~D~RG~g~S~G~~~~~~~~e~~D~~~~IeWl~ 173 (405)
T d1lnsa3 97 QKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIY---VAGVGTRSSDGFQTSGDYQQIYSMTAVIDWLN 173 (405)
T ss_dssp CCCCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEE---ECCTTSTTSCSCCCTTSHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccchHHHHhCCCEEEE---ECCCCCCCCCCccccCChhhhhhHHHHHHHHH
Confidence 000000001 11122234567889999999999 4555666665532 334578899999999998
Q ss_pred HcCCCCC--------------CcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC---------CCCCCcccc-
Q 002194 752 RRGVAHP--------------SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL---------TPFGFQNED- 807 (954)
Q Consensus 752 ~~~~~d~--------------~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~---------~~~~~~~~~- 807 (954)
++..+++ .||+++|.||||++++.+|+..|+.++|+|..+++.|+.. ....+....
T Consensus 174 ~~~~~~~~~~~~~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~~~~~~~~~~ 253 (405)
T d1lnsa3 174 GRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDL 253 (405)
T ss_dssp TSSCEESSTTCCCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCH
T ss_pred hcccccccccccccccccccCCeeEEEecCHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCccccccchhhhhh
Confidence 7644332 3899999999999999999999999999999998876310 000010000
Q ss_pred ---------c---------------------------hhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHH
Q 002194 808 ---------R---------------------------TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS 851 (954)
Q Consensus 808 ---------~---------------------------~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~ 851 (954)
. ......+.+.+.++...+++|++|+|+++|..|..|+ +.++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~~s~~~~~~~I~vP~L~i~Gw~D~~v~--~~~~ 331 (405)
T d1lnsa3 254 DVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVT--PEQA 331 (405)
T ss_dssp HHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSC--THHH
T ss_pred hhhhccccccccccchhhhchhhhhhccchhhhhhhhccccchhhhhhcChhhhhhcCCCCEEEEEeccCCCCC--HHHH
Confidence 0 0001124456678888999999999999999999998 8999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcccCC
Q 002194 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
.+++++++ .+.+.++++.|+ +|.........++.+.+++||++||+...
T Consensus 332 ~~~y~al~-~~~~~~Lilgpw-~H~~~~~~~~~d~~~~~~~wFD~~LkG~~ 380 (405)
T d1lnsa3 332 YNFWKALP-EGHAKHAFLHRG-AHIYMNSWQSIDFSETINAYFVAKLLDRD 380 (405)
T ss_dssp HHHHHHSC-TTCCEEEEEESC-SSCCCTTBSSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHH-hCCCcEEEEeCC-CCCCCcccccchHHHHHHHHHHHHhCCCC
Confidence 99999996 456789998886 88753333334567788999999998754
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.76 E-value=1.8e-17 Score=171.94 Aligned_cols=208 Identities=18% Similarity=0.116 Sum_probs=134.5
Q ss_pred CCceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC--
Q 002194 636 SLQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG-- 712 (954)
Q Consensus 636 ~~~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G-- 712 (954)
....+.+++.+. +|.++++++|+|++|++++ ++|+||++||++...... .............+...+
T Consensus 19 ~g~~~~~~~~S~~~g~~~~~~v~lP~~y~~~~--~~Pvvv~lHG~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 88 (255)
T d1jjfa_ 19 RGQVVNISYFSTATNSTRPARVYLPPGYSKDK--KYSVLYLLHGIGGSENDW--------FEGGGRANVIADNLIAEGKI 88 (255)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEECTTCCTTS--CBCEEEEECCTTCCTTTT--------TTTTTCHHHHHHHHHHTTSS
T ss_pred ceEEEEEEEEecCCCCEEEEEEEeCCCCCCCC--CCcEEEEEecCCCChHHh--------hhhhHHHHHHHHHHHhhccC
Confidence 356788888765 7899999999999998766 499999999975322111 111111112222333333
Q ss_pred --cEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc--CCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEE
Q 002194 713 --FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR--GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (954)
Q Consensus 713 --~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~--~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (954)
+.+......... .........+....+.+ .+.++.++ ..+|+++++++|+|+||++++.++.++|++|++++
T Consensus 89 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~ 164 (255)
T d1jjfa_ 89 KPLIIVTPNTNAAG-PGIADGYENFTKDLLNS---LIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIG 164 (255)
T ss_dssp CCCEEEEECCCCCC-TTCSCHHHHHHHHHHHT---HHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEE
T ss_pred Ccceeeeccccccc-ccccccccchHHHHHHH---HHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEE
Confidence 334432221111 11111112222333444 44455553 34788999999999999999999999999999999
Q ss_pred EeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002194 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (954)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (954)
+++|..+..... .....+.....+...|++|.||+.|..++ ..++++++|+++|+++++.
T Consensus 165 ~~sg~~~~~~~~----------------~~~~~~~~~~~~~~~~~~i~~G~~D~~~~----~~~~~~~~L~~~g~~~~~~ 224 (255)
T d1jjfa_ 165 PISAAPNTYPNE----------------RLFPDGGKAAREKLKLLFIACGTNDSLIG----FGQRVHEYCVANNINHVYW 224 (255)
T ss_dssp EESCCTTSCCHH----------------HHCTTTTHHHHHHCSEEEEEEETTCTTHH----HHHHHHHHHHHTTCCCEEE
T ss_pred EEccCcCCcccc----------------cccccHHHHhhccCCcceEEeCCCCCCch----HHHHHHHHHHHCCCCEEEE
Confidence 999865421100 00111122223345799999999998753 5778999999999999999
Q ss_pred EeCCCCCcC
Q 002194 869 ILPFESHGY 877 (954)
Q Consensus 869 ~~~~~~H~~ 877 (954)
++++++|.+
T Consensus 225 ~~~~ggH~~ 233 (255)
T d1jjfa_ 225 LIQGGGHDF 233 (255)
T ss_dssp EETTCCSSH
T ss_pred EECCCCcCH
Confidence 999999986
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.73 E-value=7.6e-17 Score=177.25 Aligned_cols=242 Identities=15% Similarity=0.122 Sum_probs=153.7
Q ss_pred CCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEE
Q 002194 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (954)
Q Consensus 636 ~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (954)
.++.|...+++.||..|..+.+........+.++.|+||++||.+..+.....++ .....+..|+++||.|
T Consensus 24 ~y~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~~~~~~~~---------~~~sla~~L~~~Gy~V 94 (377)
T d1k8qa_ 24 GYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNL---------PNNSLAFILADAGYDV 94 (377)
T ss_dssp TCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSC---------TTTCHHHHHHHTTCEE
T ss_pred CCCceEEEEEcCCCCEEEEEEecCCCCCCccCCCCCeEEEECCCccchhHHhhcC---------ccchHHHHHHHCCCEE
Confidence 3567888999999998877654321112223345799999999753322111110 0123677899999999
Q ss_pred EEcCCCCCCCCCCcccch------------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc
Q 002194 716 LGGPTTPIIGEGDEEAND------------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL 783 (954)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~------------~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~ 783 (954)
++ .+.+|+|.+..+. .+......|+.++++++++... .+++.++||||||.+++.++.++|+.
T Consensus 95 ~~---~D~rG~G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~g--~~~v~lvGhS~GG~ia~~~a~~~p~~ 169 (377)
T d1k8qa_ 95 WL---GNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTG--QDKLHYVGHSQGTTIGFIAFSTNPKL 169 (377)
T ss_dssp EE---CCCTTSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHHC--CSCEEEEEETHHHHHHHHHHHHCHHH
T ss_pred EE---EcCCCCCCCCCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHHcC--CCCEEEEEecchHHHHHHHHHhhhhh
Confidence 99 6777888875421 1233457799999999987633 35899999999999999999999887
Q ss_pred ccEEEEec---cCCCCCCCCC--C-------------------Ccc-------------cc----------------chh
Q 002194 784 FCCGIARS---GAYNRTLTPF--G-------------------FQN-------------ED----------------RTL 810 (954)
Q Consensus 784 ~~a~v~~~---~~~~~~~~~~--~-------------------~~~-------------~~----------------~~~ 810 (954)
++.+++.. +......... . ... .. ...
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (377)
T d1k8qa_ 170 AKRIKTFYALAPVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTM 249 (377)
T ss_dssp HTTEEEEEEESCCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGG
T ss_pred hhhceeEeeccccccccchhhHHHHHHhcchhhhhhhhhhhhccchhHHHHhhhhhhcchhhhhHHHHhhhhhhcCCCcc
Confidence 66555433 2211100000 0 000 00 000
Q ss_pred -h--hcHHHHHh-----------------------------------------cCcccccCCCCCCEEEEEeCCCCCCCC
Q 002194 811 -W--EATSTYVE-----------------------------------------MSPFMSANKLKKPILLVHGEEDNNSGT 846 (954)
Q Consensus 811 -~--~~~~~~~~-----------------------------------------~sp~~~~~~~~~P~Lii~G~~D~~v~~ 846 (954)
+ .....+.. ..+...+.++++|+|+++|+.|.+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~vPvL~i~G~~D~~~~- 328 (377)
T d1k8qa_ 250 NLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLAD- 328 (377)
T ss_dssp GSCGGGHHHHHTTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSC-
T ss_pred cccHHHhhhhhhcccccchHHHHHHHHHHHhcCcchhccchhhhhhhhhhcccCchhhhHhhCCCCEEEEEeCCCCccC-
Confidence 0 00000000 01222356789999999999999998
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEeCCCCCc--CCCcccHHHHHHHHHHHHHH
Q 002194 847 LTMQSDRFFNALKGHGALCRLVILPFESHG--YAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~fl~~ 896 (954)
++..+++.+.+.. .+++++++++||. +...+..++++.+|++||++
T Consensus 329 -~~~~~~l~~~lp~---~~~~~~i~~~GH~d~~~~~~a~~~v~~~I~~fl~~ 376 (377)
T d1k8qa_ 329 -PHDVDLLLSKLPN---LIYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGT 376 (377)
T ss_dssp -HHHHHHHHTTCTT---EEEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHT
T ss_pred -HHHHHHHHHHCCC---CeEEEEeCCCCCcchhhccchHHHHHHHHHHHHhc
Confidence 8888877766543 3678899999996 22345678899999999975
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.3e-15 Score=164.84 Aligned_cols=269 Identities=10% Similarity=0.009 Sum_probs=173.2
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCC
Q 002194 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (954)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~ 188 (954)
..+..++|||||++||..++ +.|.||++...+.......+....+.
T Consensus 52 ~~V~~v~fs~~g~~latg~d----------------------------------g~V~iWd~~~~~~~~~~~~~~~~~h~ 97 (337)
T d1gxra_ 52 EVVCAVTISNPTRHVYTGGK----------------------------------GCVKVWDISHPGNKSPVSQLDCLNRD 97 (337)
T ss_dssp SCCCEEEECSSSSEEEEECB----------------------------------SEEEEEETTSTTCCSCSEEEECSCTT
T ss_pred CcEEEEEECCCCCEEEEEEC----------------------------------CEEEEEEccCCcccceeEEeeecCCC
Confidence 36788999999999998764 37899999653321122222211222
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecc--cCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLF--QSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt--~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
..+...+|||||+.|+.... ...|.++|+.....+... ..... .+....|+||+..++...
T Consensus 98 ~~I~~v~~s~dg~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~s~~---- 160 (337)
T d1gxra_ 98 NYIRSCKLLPDGCTLIVGGE---------ASTLSIWDLAAPTPRIKAELTSSAP----ACYALAISPDSKVCFSCC---- 160 (337)
T ss_dssp SBEEEEEECTTSSEEEEEES---------SSEEEEEECCCC--EEEEEEECSSS----CEEEEEECTTSSEEEEEE----
T ss_pred CcEEEEEEcCCCCEEEEeec---------ccccccccccccccccccccccccc----cccccccccccccccccc----
Confidence 36888999999999887542 446667776654332221 11111 155788999999888651
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC--ccccccccCCCC
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDE 343 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~--~~~~~~~~SpDG 343 (954)
....+..+++ +++....... ..+..++|+++|
T Consensus 161 ---------------------------------------------~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~ 195 (337)
T d1gxra_ 161 ---------------------------------------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG 195 (337)
T ss_dssp ---------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred ---------------------------------------------ccccccccccccccccccccccccccccccccccc
Confidence 1234667777 6654443332 667788999999
Q ss_pred cEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 344 k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
+.++..+.+ +.+.+||+..++........ ..+..++|+|+++.++..
T Consensus 196 ~~~~~~~~d-------------~~v~i~d~~~~~~~~~~~~~-------------~~i~~l~~~~~~~~l~~~------- 242 (337)
T d1gxra_ 196 TKLWTGGLD-------------NTVRSWDLREGRQLQQHDFT-------------SQIFSLGYCPTGEWLAVG------- 242 (337)
T ss_dssp SEEEEEETT-------------SEEEEEETTTTEEEEEEECS-------------SCEEEEEECTTSSEEEEE-------
T ss_pred ccccccccc-------------ccccccccccceeecccccc-------------cceEEEEEccccccccee-------
Confidence 999988733 38999999865432222111 234678999999877654
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCC
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 503 (954)
...+.+.++++ ..++......+...+..++|+|||+.|+..+.++ .|.+++..++ +...... ..
T Consensus 243 ------~~d~~i~i~d~---~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg----~i~iwd~~~~--~~~~~~~-~~ 306 (337)
T d1gxra_ 243 ------MESSNVEVLHV---NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN----LLNAWRTPYG--ASIFQSK-ES 306 (337)
T ss_dssp ------ETTSCEEEEET---TSSCEEEECCCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTC--CEEEEEE-CS
T ss_pred ------ccccccccccc---cccccccccccccccceEEECCCCCEEEEEeCCC----eEEEEECCCC--CEEEEcc-CC
Confidence 33557888986 5555555556666788899999999888765443 3555666664 3233222 22
Q ss_pred CCccCCCCCCCeeeccCCcEEEEEE
Q 002194 504 EDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
..+.. +.|+|||++|+...
T Consensus 307 ~~v~~------~~~s~d~~~l~t~s 325 (337)
T d1gxra_ 307 SSVLS------CDISVDDKYIVTGS 325 (337)
T ss_dssp SCEEE------EEECTTSCEEEEEE
T ss_pred CCEEE------EEEeCCCCEEEEEe
Confidence 33333 78999999988765
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.70 E-value=5.2e-17 Score=167.27 Aligned_cols=230 Identities=12% Similarity=0.018 Sum_probs=144.4
Q ss_pred CCcCCCceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH
Q 002194 632 PQLASLQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA 710 (954)
Q Consensus 632 ~~~~~~~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 710 (954)
++....+++.+++.+. .|.++.+++|+|+++++. ++|+||++||+++.. . .........+++
T Consensus 8 p~~~~~~~~~~~~~S~~lg~~~~~~v~~P~~~~~~---~~Pvvv~lhG~~~~~--------~------~~~~~~l~~l~~ 70 (246)
T d3c8da2 8 PQAPEIPAKEIIWKSERLKNSRRVWIFTTGDVTAE---ERPLAVLLDGEFWAQ--------S------MPVWPVLTSLTH 70 (246)
T ss_dssp CCCCSSCCEEEEEEETTTTEEEEEEEEEC-----C---CCCEEEESSHHHHHH--------T------SCCHHHHHHHHH
T ss_pred CCCCCCCcEEEEEECCCCCCEEEEEEEECCCCCCC---CCCEEEEeCCcchhc--------c------CcHHHHHHHHHH
Confidence 3344456788888875 488999999999988543 499999999963211 0 001123455666
Q ss_pred CC----cEEEEcCCCCCCCCCCc-ccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCccc
Q 002194 711 RG----FAILGGPTTPIIGEGDE-EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC 785 (954)
Q Consensus 711 ~G----~~V~~~~~~~~~G~G~~-~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~ 785 (954)
+| ++++..+.......... .....+.....+++...++... ...+|+++++++|+||||++|++++.++|++|+
T Consensus 71 ~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~v~~~~-~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~ 149 (246)
T d3c8da2 71 RQQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVIA-PFSDRADRTVVAGQSFGGLSALYAGLHWPERFG 149 (246)
T ss_dssp TTSSCSCEEEEECCCSHHHHHHHSSSCHHHHHHHHHTHHHHHHHHS-CCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCC
T ss_pred hCCCCceEEeecccccccccccccCccHHHHHHHHHHhhhHHHHhc-ccccCccceEEEecCchhHHHhhhhccCCchhc
Confidence 65 33444322110000000 0112233333444444433321 234788999999999999999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcE
Q 002194 786 CGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALC 865 (954)
Q Consensus 786 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~ 865 (954)
++++++|.++...... .....+....+.....+...|+++.+|+.|..+ ..++++|.++|+.+|.++
T Consensus 150 a~~~~sg~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~G~~D~~~---~~~~~~l~~~L~~~g~~~ 216 (246)
T d3c8da2 150 CVLSQSGSYWWPHRGG----------QQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMI---MRANQALYAQLHPIKESI 216 (246)
T ss_dssp EEEEESCCTTTTCTTS----------SSCCHHHHHHHTTSSCCCSCEEEEEEESSCHHH---HHHHHHHHHHTGGGTTSE
T ss_pred EEEcCCcccccccCCc----------cchHHHHHHhhhhhhhccCCCeEEEecCCCcch---hHHHHHHHHHHHHCCCCE
Confidence 9999999876432211 011122333455566677889999999999865 578899999999999999
Q ss_pred EEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 866 RLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 866 ~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
++.++|| ||.+.. ....+...+.||-+
T Consensus 217 ~~~~~~G-gH~~~~---W~~~l~~~l~~l~~ 243 (246)
T d3c8da2 217 FWRQVDG-GHDALC---WRGGLMQGLIDLWQ 243 (246)
T ss_dssp EEEEESC-CSCHHH---HHHHHHHHHHHHHG
T ss_pred EEEEeCC-CCChHH---HHHHHHHHHHHHHH
Confidence 9999998 897632 23334444455443
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=9.4e-16 Score=155.50 Aligned_cols=132 Identities=17% Similarity=0.163 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHh
Q 002194 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819 (954)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (954)
.+.+...++.+.+. .+|++||+++|+|+||.+|+.++.++|+.|+++|++++...... .+.
T Consensus 93 ~~~l~~li~~~~~~-~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~---~~~--------------- 153 (229)
T d1fj2a_ 93 AENIKALIDQEVKN-GIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRA---SFP--------------- 153 (229)
T ss_dssp HHHHHHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGG---GSC---------------
T ss_pred HHHHHHHhhhhhhc-CCCccceeeeecccchHHHHHHHHhhccccCccccccccccccc---ccc---------------
Confidence 34444444544444 48999999999999999999999999999999999988432100 000
Q ss_pred cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHh--CCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG--HGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 820 ~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~--~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
..+ ....+.++|+|++||++|.+|| ++.++++++.|+. .+.+++++.|++++|.+. .+.++.+.+||+++
T Consensus 154 ~~~-~~~~~~~~Pvli~hG~~D~~vp--~~~~~~~~~~L~~~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~wL~~~ 225 (229)
T d1fj2a_ 154 QGP-IGGANRDISILQCHGDCDPLVP--LMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSC-----QQEMMDVKQFIDKL 225 (229)
T ss_dssp SSC-CCSTTTTCCEEEEEETTCSSSC--HHHHHHHHHHHHHHSCGGGEEEEEETTCCSSCC-----HHHHHHHHHHHHHH
T ss_pred ccc-cccccccCceeEEEcCCCCeeC--HHHHHHHHHHHHhcCCCCceEEEEeCCCCCccC-----HHHHHHHHHHHHhH
Confidence 000 1112235899999999999999 9999999999987 467899999999999875 34578899999999
Q ss_pred c
Q 002194 898 C 898 (954)
Q Consensus 898 l 898 (954)
|
T Consensus 226 L 226 (229)
T d1fj2a_ 226 L 226 (229)
T ss_dssp S
T ss_pred C
Confidence 7
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.68 E-value=2.9e-16 Score=172.72 Aligned_cols=254 Identities=15% Similarity=0.141 Sum_probs=161.9
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCC--CcccHHHHHHHHCC
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFP--RIGSTSVLLWLARG 712 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~la~~G 712 (954)
.....+.|.++.+||++|.+.||+|++ .+++|+||+.|+..... .....+.... ......+..|+++|
T Consensus 24 ~~~~~~~v~ipmrDG~~L~~~v~~P~~-----~~~~P~il~~tpY~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~G 93 (385)
T d2b9va2 24 RDYIKREVMVPMRDGVKLYTVIVIPKN-----ARNAPILLTRTPYNAKG-----RANRVPNALTMREVLPQGDDVFVEGG 93 (385)
T ss_dssp CSEEEEEEEEECTTSCEEEEEEEEETT-----CCSEEEEEEEESSCHHH-----HTCSSTTCSSHHHHSCGGGHHHHHTT
T ss_pred CCCeEeEEEEECCCCCEEEEEEEEcCC-----CCceeEEEEEccCCCCC-----ccccCCcccccccccchHHHHHHhCC
Confidence 334567899999999999999999975 34699999876521000 0000001110 01123456899999
Q ss_pred cEEEEcCCCCCCCCCCcccc--------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcc
Q 002194 713 FAILGGPTTPIIGEGDEEAN--------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~--------~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~ 784 (954)
|+|+..+.+|..+.+..+.. ..+.....+|..++++||.+++..+..||+++|+||||++++.+|+..|+.+
T Consensus 94 y~vv~~d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l 173 (385)
T d2b9va2 94 YIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPAL 173 (385)
T ss_dssp CEEEEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTE
T ss_pred cEEEEEcCCcccCCCCceeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcc
Confidence 99999666544332222111 1122346899999999999998778899999999999999999999998999
Q ss_pred cEEEEeccCCCCCCCCCCCc-----------------------c---ccchhhhc-------------------------
Q 002194 785 CCGIARSGAYNRTLTPFGFQ-----------------------N---EDRTLWEA------------------------- 813 (954)
Q Consensus 785 ~a~v~~~~~~~~~~~~~~~~-----------------------~---~~~~~~~~------------------------- 813 (954)
+|+|..+++.+.......+. . .....+..
T Consensus 174 ~a~~~~~~~~d~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 253 (385)
T d2b9va2 174 KVAAPESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRM 253 (385)
T ss_dssp EEEEEEEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHH
T ss_pred eEEEEecccccccccccccCCchhccccHHHHHhhhhhcccCccccccchHHHHHHHHhccccccchhcccchhhhhhhh
Confidence 99999988766432110000 0 00000000
Q ss_pred ------HHHHHhcCcccc--cCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhC--CCcEEEEEeCCCCCcCCC----
Q 002194 814 ------TSTYVEMSPFMS--ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH--GALCRLVILPFESHGYAA---- 879 (954)
Q Consensus 814 ------~~~~~~~sp~~~--~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~--g~~~~~~~~~~~~H~~~~---- 879 (954)
.+.+...++... ..++.+|+|++.|..|... ...+.+.++.++.. +.+.++++-|. +|....
T Consensus 254 ~~~p~~d~~w~~~s~~~~~~~~~i~vP~l~~~g~~dd~~---~~g~~~~~~~l~~~~~~~~~~LiiGPw-~H~~~~~~~~ 329 (385)
T d2b9va2 254 HAHPAYDAFWQGQALDKILAQRKPTVPMLWEQGLWDQED---MWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGS 329 (385)
T ss_dssp HHCCSSSHHHHTTCHHHHHHHHCCCSCEEEEEETTCSSC---SSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCS
T ss_pred ccCcccchhhhhcChhHHHhhccccCceEEEEecccCCc---ccchHHHHHHHHhhccCCCcEEEEeCC-cCCCcccccc
Confidence 011222233222 2356789999999887654 46677788888765 45789988886 664211
Q ss_pred --------cc-cHHHHHHHHHHHHHHhcccCC
Q 002194 880 --------RE-SIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 880 --------~~-~~~~~~~~i~~fl~~~l~~~~ 902 (954)
.+ ....+.+.+++||++||+...
T Consensus 330 ~~g~~~~~~~~~~~~~~~~~l~WFD~~LKG~~ 361 (385)
T d2b9va2 330 TLGPLEFEGDTAHQYRRDVFRPFFDEYLKPGS 361 (385)
T ss_dssp EETTEECSSCHHHHHHHHTHHHHHHHHHSTTC
T ss_pred cccccccCcccchhhHHHHHHHHHHHHcCCCC
Confidence 11 223444567999999998654
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=5e-17 Score=169.61 Aligned_cols=206 Identities=12% Similarity=0.059 Sum_probs=140.9
Q ss_pred ceEEEEEEcCCCe-EEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 638 QKELIKYQRKDGV-QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 638 ~~~~~~~~~~~g~-~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
+.+.++|++.+|. ++.++|++|+++++.+ ++|+|+++||++.... .. .....+..+.+|+.|+
T Consensus 12 ~~~~~~~~s~dg~~~~~~~v~~P~~~~~~~--~yPvi~~lhG~~~~~~-----~~---------~~~~~~~~~~~~~~vV 75 (265)
T d2gzsa1 12 HFSATSFDSVDGTRHYRVWTAVPNTTAPAS--GYPILYMLDGNAVMDR-----LD---------DELLKQLSEKTPPVIV 75 (265)
T ss_dssp EEEEEEEECTTSSCEEEEEEEEESSCCCTT--CEEEEEESSHHHHHHH-----CC---------HHHHHHHTTSCCCEEE
T ss_pred eeEEEEEEcCCCCEEEEEEEEcCCCCCCCC--CceEEEEecCcchhhh-----HH---------HHHHHHHHhcCCCeEE
Confidence 4678899999984 8999999999998766 4999999999631110 00 0112233345889888
Q ss_pred EcCCCCCCCCCCcccc----------------------hhhHH-HHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHH
Q 002194 717 GGPTTPIIGEGDEEAN----------------------DRFVE-QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMT 773 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~----------------------~~~~~-~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a 773 (954)
...+.+..+++..... ..... .......+++.++.++..+|+++++|+|+|+||+++
T Consensus 76 ~v~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a 155 (265)
T d2gzsa1 76 AVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFV 155 (265)
T ss_dssp EEEESSSSSCCHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHH
T ss_pred EecCCCCCcCcccccccccccccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHH
Confidence 7544433332211000 00001 111122345667777777899999999999999999
Q ss_pred HHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCC--------CCCCC
Q 002194 774 ANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEE--------DNNSG 845 (954)
Q Consensus 774 ~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~--------D~~v~ 845 (954)
+.++.+. +.|.++++.+|... |.....+...++.........|+++.+|+. |..++
T Consensus 156 ~~~~~~~-~~f~~~~a~s~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~ 219 (265)
T d2gzsa1 156 LDSWLSS-SYFRSYYSASPSLG---------------RGYDALLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGV 219 (265)
T ss_dssp HHHHHHC-SSCSEEEEESGGGS---------------TTHHHHHHHHHTSCTTTTTTCEEEEEECCC-----------CH
T ss_pred HHHHHcC-cccCEEEEECCccc---------------ccchhhhhccccccccccCCCcEEEEcCCcccccccccccchh
Confidence 9987765 67888998887532 223333444455566667778899999977 66777
Q ss_pred CchHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 002194 846 TLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (954)
Q Consensus 846 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (954)
+.++++++++|+++|+++++.+|||++|+.
T Consensus 220 --~~~~~~l~~~L~~~g~~~~~~~~pG~~Hg~ 249 (265)
T d2gzsa1 220 --LSKIHTTLTILKDKGVNAVFWDFPNLGHGP 249 (265)
T ss_dssp --HHHHHHHHHHHHHTTCCEEEEECTTCCHHH
T ss_pred --HHHHHHHHHHHHHCCCCEEEEEcCCCCcch
Confidence 889999999999999999999999999974
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.68 E-value=1.1e-15 Score=152.62 Aligned_cols=179 Identities=15% Similarity=0.112 Sum_probs=124.7
Q ss_pred CCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCc--------ccchhhHHHH
Q 002194 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE--------EANDRFVEQL 739 (954)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~--------~~~~~~~~~~ 739 (954)
.+.|+||++||.... ...| ......++ .++.++.++.......+.. ..........
T Consensus 21 ~~~p~vv~lHG~g~~-----------~~~~----~~l~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (209)
T d3b5ea1 21 ESRECLFLLHGSGVD-----------ETTL----VPLARRIA-PTATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAE 84 (209)
T ss_dssp SCCCEEEEECCTTBC-----------TTTT----HHHHHHHC-TTSEEEEECCSEEETTEEESSCEEETTEECHHHHHHH
T ss_pred CCCCEEEEEcCCCCC-----------HHHH----HHHHHHhc-cCcEEEeeccCcCcccCccccccCCccccchhhHHHH
Confidence 348999999996321 1112 12333343 5777777544211111111 0011223445
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHh
Q 002194 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819 (954)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (954)
+.++...++.+.++..+|++||+++|+|+||++++.++.++|++|+++|+++|.....
T Consensus 85 ~~~l~~~l~~~~~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~---------------------- 142 (209)
T d3b5ea1 85 TAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD---------------------- 142 (209)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS----------------------
T ss_pred HHHHHHHHHHHHHHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCccccc----------------------
Confidence 6777778888888877999999999999999999999999999999999999853211
Q ss_pred cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 820 ~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+.......++|+|++||++|.+++ ..+.++.+.|+..|.++++++|++ +|.+. ....+.+.+||.
T Consensus 143 --~~~~~~~~~~p~~~~~G~~D~~~~---~~~~~~~~~l~~~G~~v~~~~~~g-gH~i~-----~~~~~~~~~wl~ 207 (209)
T d3b5ea1 143 --HVPATDLAGIRTLIIAGAADETYG---PFVPALVTLLSRHGAEVDARIIPS-GHDIG-----DPDAAIVRQWLA 207 (209)
T ss_dssp --SCCCCCCTTCEEEEEEETTCTTTG---GGHHHHHHHHHHTTCEEEEEEESC-CSCCC-----HHHHHHHHHHHH
T ss_pred --cccccccccchheeeeccCCCccC---HHHHHHHHHHHHCCCCeEEEEECC-CCCCC-----HHHHHHHHHHhC
Confidence 111122346899999999999985 567889999999999999999998 79985 233456677774
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=2.3e-17 Score=172.00 Aligned_cols=192 Identities=14% Similarity=0.126 Sum_probs=122.3
Q ss_pred CccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002194 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (954)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (954)
+.|+|||+|||.|...... ...+..+...+...++++||.|+..+|+...+. .++..++|+.++++
T Consensus 30 ~~~~vv~iHGGg~~~~~~~------~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~--------~~~~~~~d~~~~~~ 95 (263)
T d1vkha_ 30 TREAVIYIHGGAWNDPENT------PNDFNQLANTIKSMDTESTVCQYSIEYRLSPEI--------TNPRNLYDAVSNIT 95 (263)
T ss_dssp CCEEEEEECCSTTTCTTCC------GGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTS--------CTTHHHHHHHHHHH
T ss_pred CCcEEEEECCCCccCCCCC------cchHHHHHHHHHHHHHhCCeEEEEeccccCcch--------hhhHHHHhhhhhhh
Confidence 4799999999865322111 111111111233444578999999887644322 23567899999999
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC-----------------cccEEEEeccCCCCCCCCCCCcc------
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-----------------LFCCGIARSGAYNRTLTPFGFQN------ 805 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----------------~~~a~v~~~~~~~~~~~~~~~~~------ 805 (954)
|+.++. ++++|+|+|+|+||++++.++...++ .+.+.+...+.++.......+..
T Consensus 96 ~l~~~~--~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (263)
T d1vkha_ 96 RLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTR 173 (263)
T ss_dssp HHHHHH--TCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHH
T ss_pred cccccc--cccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhhccccchhhh
Confidence 999874 56799999999999999998876532 23444455554331100000000
Q ss_pred ----ccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 002194 806 ----EDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 806 ----~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
.....|..............+.++..|+|++||++|.+|| +.++.+++++|+..|++++++++++++|...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp--~~~s~~l~~~L~~~g~~~~~~~~~~~~H~~~ 248 (263)
T d1vkha_ 174 LAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLT--LRQTNCLISCLQDYQLSFKLYLDDLGLHNDV 248 (263)
T ss_dssp HHCTTCGGGCCCCHHHHHHHHHHHHHHHTCEEEEEEETTCSSCC--THHHHHHHHHHHHTTCCEEEEEECCCSGGGG
T ss_pred cccccccccccccccccCccccccccccCCCeeeeecCCCcccC--HHHHHHHHHHHHHCCCCEEEEEECCCCchhh
Confidence 0000000000000000112244567999999999999999 9999999999999999999999999999753
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.7e-17 Score=165.73 Aligned_cols=191 Identities=15% Similarity=0.069 Sum_probs=128.0
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+++.....|.. ....|.||++||.+.... .|.. ...+..|+++||.|++ .|.+|+
T Consensus 13 v~G~~i~y~~~~~~~-----~~~~~~vvllHG~~~~~~-----------~w~~--~~~~~~la~~gy~via---~D~~G~ 71 (208)
T d1imja_ 13 VQGQALFFREALPGS-----GQARFSVLLLHGIRFSSE-----------TWQN--LGTLHRLAQAGYRAVA---IDLPGL 71 (208)
T ss_dssp ETTEEECEEEEECSS-----SCCSCEEEECCCTTCCHH-----------HHHH--HTHHHHHHHTTCEEEE---ECCTTS
T ss_pred ECCEEEEEEEecCCC-----CCCCCeEEEECCCCCChh-----------HHhh--hHHHHHHHHcCCeEEE---eecccc
Confidence 489999988888753 123577899999642211 0100 0124678899999999 566678
Q ss_pred CCcccchhh---H-HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCC
Q 002194 727 GDEEANDRF---V-EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 802 (954)
Q Consensus 727 G~~~~~~~~---~-~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~ 802 (954)
|.+...... . ....+++.+.++.+ +.+++.|+||||||.+++.++.++|++++++|+++|+.....
T Consensus 72 G~S~~~~~~~~~~~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~~~~---- 141 (208)
T d1imja_ 72 GHSKEAAAPAPIGELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI---- 141 (208)
T ss_dssp GGGTTSCCSSCTTSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGGS----
T ss_pred cCCCCCCcccccchhhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCccccccc----
Confidence 877543211 1 11122333333332 346889999999999999999999999999999988532100
Q ss_pred CccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCccc
Q 002194 803 FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES 882 (954)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 882 (954)
......++++|+|++||++|..+| .. .+ .++ .-...++.++++++|... .++
T Consensus 142 -------------------~~~~~~~i~~P~Lii~G~~D~~~~--~~--~~---~~~-~~~~~~~~~i~~~gH~~~-~~~ 193 (208)
T d1imja_ 142 -------------------NAANYASVKTPALIVYGDQDPMGQ--TS--FE---HLK-QLPNHRVLIMKGAGHPCY-LDK 193 (208)
T ss_dssp -------------------CHHHHHTCCSCEEEEEETTCHHHH--HH--HH---HHT-TSSSEEEEEETTCCTTHH-HHC
T ss_pred -------------------ccccccccccccccccCCcCcCCc--HH--HH---HHH-hCCCCeEEEECCCCCchh-hhC
Confidence 011234678999999999998765 33 12 222 234589999999999753 466
Q ss_pred HHHHHHHHHHHHHH
Q 002194 883 IMHVLWETDRWLQK 896 (954)
Q Consensus 883 ~~~~~~~i~~fl~~ 896 (954)
.+.+.+.+.+||+.
T Consensus 194 p~~~~~~l~~Fl~~ 207 (208)
T d1imja_ 194 PEEWHTGLLDFLQG 207 (208)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 77888999999874
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=7.4e-16 Score=162.63 Aligned_cols=242 Identities=14% Similarity=0.092 Sum_probs=158.0
Q ss_pred CceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEE
Q 002194 637 LQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (954)
Q Consensus 637 ~~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (954)
++++.+++.+. .|.+++..++.|. +++|+|+++||++...... .|.. .......+.+.|++|
T Consensus 7 ~~v~~~~~~s~~~~r~~~~~v~~p~-------~~~Pvl~llhG~~~~~d~~---------~~~~-~~~~~~~~~~~~~~~ 69 (288)
T d1sfra_ 7 LPVEYLQVPSPSMGRDIKVQFQSGG-------ANSPALYLLDGLRAQDDFS---------GWDI-NTPAFEWYDQSGLSV 69 (288)
T ss_dssp CCCEEEEEEETTTTEEEEEEEECCS-------TTBCEEEEECCTTCCSSSC---------HHHH-HCCHHHHHTTSSCEE
T ss_pred CEEEEEEEECCCCCcEEEEEEeCCC-------CCceEEEEcCCCCCCCcch---------hhhh-hccHHHHHHhCCCEE
Confidence 45677888755 6888998888763 2599999999953110000 0100 012345566789999
Q ss_pred EEcCCCCCCCCCCcccc---------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccE
Q 002194 716 LGGPTTPIIGEGDEEAN---------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (954)
Q Consensus 716 ~~~~~~~~~G~G~~~~~---------~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a 786 (954)
+.++......++....+ ..+.... +.+.+.+|.++..+|++|++|+|+||||++|+.+++++|++|++
T Consensus 70 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~a 146 (288)
T d1sfra_ 70 VMPVGGQSSFYSDWYQPACGKAGCQTYKWETFL---TSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVY 146 (288)
T ss_dssp EEECCCTTCTTCBCSSCEEETTEEECCBHHHHH---HTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEE
T ss_pred EEeccCCCCCCccccCcccccccccchhHHHHH---HHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccE
Confidence 98766443332221111 1222222 34667778888789999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCCcc----------ccchhh--hcHHHHHhcCcccccCCC---CCCEEEEEeCCCCCCCCc----
Q 002194 787 GIARSGAYNRTLTPFGFQN----------EDRTLW--EATSTYVEMSPFMSANKL---KKPILLVHGEEDNNSGTL---- 847 (954)
Q Consensus 787 ~v~~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~~~sp~~~~~~~---~~P~Lii~G~~D~~v~~~---- 847 (954)
+++++|.++.......... .....+ .+...+..++|...+++. ..++++.+|+.|..++..
T Consensus 147 v~~~Sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~ 226 (288)
T d1sfra_ 147 AGAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLP 226 (288)
T ss_dssp EEEESCCSCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHH
T ss_pred EEEecCcccccccccchhhhhhhhhcccccHhhhcCCcchhhhHhcCHHHHHHHhhhcCCeEEEEeCCCCCCCccccccc
Confidence 9999998774432110000 000001 112234556676655443 468999999999876410
Q ss_pred --------hHHHHHHHHHHHhCCCcEEEEEeCCC-CCcCCCcccHHHHHHHHHHHHHHhcccC
Q 002194 848 --------TMQSDRFFNALKGHGALCRLVILPFE-SHGYAARESIMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 848 --------~~~~~~~~~~l~~~g~~~~~~~~~~~-~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (954)
..+++++.++|+..|++..+..+++. +|.+. .....+..++.||.+.|+..
T Consensus 227 ~~~~e~~~~~~~~~l~~~l~~~g~~~~~~~~~~~G~H~w~---~w~~~l~~~l~~l~~alg~~ 286 (288)
T d1sfra_ 227 AKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFPDSGTHSWE---YWGAQLNAMKPDLQRALGAT 286 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHTCC
T ss_pred cchhHHHHHHHHHHHHHHHHHCCCCeEEEEECCCCccChh---HHHHHHHHHHHHHHHhcCCC
Confidence 14678899999999999999888865 69763 23445567788899888643
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.66 E-value=1.4e-15 Score=160.92 Aligned_cols=212 Identities=15% Similarity=0.092 Sum_probs=137.7
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+|+...+-+++ .|.||++||.+... ..|...+...|+++||.|++ .+.+|+
T Consensus 7 ~g~~~i~y~~~G~~~--------~p~vvl~HG~~~~~--------------~~~~~~~~~~l~~~g~~vi~---~D~~G~ 61 (297)
T d1q0ra_ 7 SGDVELWSDDFGDPA--------DPALLLVMGGNLSA--------------LGWPDEFARRLADGGLHVIR---YDHRDT 61 (297)
T ss_dssp ETTEEEEEEEESCTT--------SCEEEEECCTTCCG--------------GGSCHHHHHHHHTTTCEEEE---ECCTTS
T ss_pred ECCEEEEEEEecCCC--------CCEEEEECCCCcCh--------------hHHHHHHHHHHHhCCCEEEE---EeCCCC
Confidence 467888877774332 58899999974221 11223456678889999999 666788
Q ss_pred CCcccch-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC---
Q 002194 727 GDEEAND-----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL--- 798 (954)
Q Consensus 727 G~~~~~~-----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~--- 798 (954)
|.+.... .......+|+.+.++.+ +.+++.++||||||.+++.+|.++|++++++|++++......
T Consensus 62 G~S~~~~~~~~~~~~~~~~~d~~~ll~~l------~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~~~~~~~~ 135 (297)
T d1q0ra_ 62 GRSTTRDFAAHPYGFGELAADAVAVLDGW------GVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDA 135 (297)
T ss_dssp TTSCCCCTTTSCCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHH
T ss_pred cccccccccccccccchhhhhhccccccc------cccceeeccccccchhhhhhhcccccceeeeEEEccccccccchh
Confidence 8774321 12455566666665553 446899999999999999999999999999999876532110
Q ss_pred ----------CCCCCcccc----------------c------------------hhhhc-------HHHHH---------
Q 002194 799 ----------TPFGFQNED----------------R------------------TLWEA-------TSTYV--------- 818 (954)
Q Consensus 799 ----------~~~~~~~~~----------------~------------------~~~~~-------~~~~~--------- 818 (954)
......... . ..+.. ...+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (297)
T d1q0ra_ 136 NIERVMRGEPTLDGLPGPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEP 215 (297)
T ss_dssp HHHHHHHTCCCSSCSCCCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCC
T ss_pred hhHHHhhhhhhhhhhhhhhHHHHHHHHHhccccchhhHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhccccchhh
Confidence 000000000 0 00000 00000
Q ss_pred ---------hcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHH
Q 002194 819 ---------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889 (954)
Q Consensus 819 ---------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~ 889 (954)
..+....+.++++|+|+++|++|..+| +..++.+.+.+. +.+++++|++||.+. .+..+.+.+.
T Consensus 216 ~~~~~~~~~~~~~~~~l~~i~~Pvlvi~G~~D~~~~--~~~~~~~~~~~p----~~~~~~i~~~gH~~~-~e~p~~~~~~ 288 (297)
T d1q0ra_ 216 YAHYSLTLPPPSRAAELREVTVPTLVIQAEHDPIAP--APHGKHLAGLIP----TARLAEIPGMGHALP-SSVHGPLAEV 288 (297)
T ss_dssp CGGGGCCCCCGGGGGGGGGCCSCEEEEEETTCSSSC--TTHHHHHHHTST----TEEEEEETTCCSSCC-GGGHHHHHHH
T ss_pred hhhhhhhhccccchhhhhccCCceEEEEeCCCCCCC--HHHHHHHHHhCC----CCEEEEECCCCCcch-hhCHHHHHHH
Confidence 001123456788999999999999998 888877766553 468999999999874 5666677677
Q ss_pred HHHHHHH
Q 002194 890 TDRWLQK 896 (954)
Q Consensus 890 i~~fl~~ 896 (954)
|++||+.
T Consensus 289 i~~~l~~ 295 (297)
T d1q0ra_ 289 ILAHTRS 295 (297)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777654
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.65 E-value=2.7e-16 Score=165.41 Aligned_cols=217 Identities=19% Similarity=0.146 Sum_probs=140.5
Q ss_pred EEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC
Q 002194 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (954)
|...+|.+|+...+-.+. ..|+||++||++.... .| ......++++||.|++ .|.
T Consensus 6 ~~~~~g~~i~y~~~g~~~-------~~~~iv~lHG~~g~~~-----------~~----~~~~~~~~~~~~~vi~---~D~ 60 (290)
T d1mtza_ 6 YAKVNGIYIYYKLCKAPE-------EKAKLMTMHGGPGMSH-----------DY----LLSLRDMTKEGITVLF---YDQ 60 (290)
T ss_dssp EEEETTEEEEEEEECCSS-------CSEEEEEECCTTTCCS-----------GG----GGGGGGGGGGTEEEEE---ECC
T ss_pred eEEECCEEEEEEEcCCCC-------CCCeEEEECCCCCchH-----------HH----HHHHHHHHHCCCEEEE---EeC
Confidence 334689999877765321 1488999999752211 11 1223356788999999 666
Q ss_pred CCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC-
Q 002194 724 IGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT- 799 (954)
Q Consensus 724 ~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~- 799 (954)
+|+|.+..+. ......++|+.+.++.+.. .+++.++||||||.+++.++.++|++++++|..+++......
T Consensus 61 ~G~G~S~~~~~~~~~~~~~~~~l~~ll~~l~~-----~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 135 (290)
T d1mtza_ 61 FGCGRSEEPDQSKFTIDYGVEEAEALRSKLFG-----NEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTV 135 (290)
T ss_dssp TTSTTSCCCCGGGCSHHHHHHHHHHHHHHHHT-----TCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHH
T ss_pred CCCccccccccccccccchhhhhhhhhccccc-----ccccceecccccchhhhhhhhcChhhheeeeecccccCcccch
Confidence 7888875431 2245667777776666532 258999999999999999999999999999998875321000
Q ss_pred ----------C-------------CCCccc-c-------------------chhhhcHHH------H-------------
Q 002194 800 ----------P-------------FGFQNE-D-------------------RTLWEATST------Y------------- 817 (954)
Q Consensus 800 ----------~-------------~~~~~~-~-------------------~~~~~~~~~------~------------- 817 (954)
. ..+... . ......... +
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (290)
T d1mtza_ 136 KEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITG 215 (290)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHSSHHHHHTCSBTTBCCS
T ss_pred hhhhhhhhhhhHHHHHHHHHhhhhccccchhHHHHHHHHhhhhhcccccchHHHHHHHHHHhhhhhhhhhcchhHHhHhh
Confidence 0 000000 0 000000000 0
Q ss_pred --HhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 818 --VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 818 --~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
...+......++++|+|+++|++|..+| ..++.+.+.+. ++++++++++||... .++.+.+.+.|.+||.
T Consensus 216 ~~~~~~~~~~~~~i~~P~l~i~G~~D~~~~---~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~FL~ 287 (290)
T d1mtza_ 216 TIKDWDITDKISAIKIPTLITVGEYDEVTP---NVARVIHEKIA----GSELHVFRDCSHLTM-WEDREGYNKLLSDFIL 287 (290)
T ss_dssp TTTTCBCTTTGGGCCSCEEEEEETTCSSCH---HHHHHHHHHST----TCEEEEETTCCSCHH-HHSHHHHHHHHHHHHH
T ss_pred hhhcccHHHHhhcccceEEEEEeCCCCCCH---HHHHHHHHHCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHHH
Confidence 0011223445678999999999998764 56677666654 358899999999864 5667888999999999
Q ss_pred Hhc
Q 002194 896 KYC 898 (954)
Q Consensus 896 ~~l 898 (954)
+|+
T Consensus 288 ~h~ 290 (290)
T d1mtza_ 288 KHL 290 (290)
T ss_dssp TCC
T ss_pred HhC
Confidence 875
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.65 E-value=5.2e-15 Score=154.30 Aligned_cols=214 Identities=14% Similarity=0.168 Sum_probs=134.6
Q ss_pred EEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC
Q 002194 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (954)
+++.||.+|+...+ + + -|.||++||.+... ..| ...+..|+++||.|++ .+.
T Consensus 3 ~~t~dG~~l~y~~~---G-----~--g~~ivlvHG~~~~~-----------~~~----~~~~~~l~~~g~~vi~---~D~ 54 (274)
T d1a8qa_ 3 CTTRDGVEIFYKDW---G-----Q--GRPVVFIHGWPLNG-----------DAW----QDQLKAVVDAGYRGIA---HDR 54 (274)
T ss_dssp EECTTSCEEEEEEE---C-----S--SSEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEE---ECC
T ss_pred EECcCCCEEEEEEE---C-----C--CCeEEEECCCCCCH-----------HHH----HHHHHHHHHCCCEEEE---EeC
Confidence 57789998886654 1 1 35688899964211 111 2346678899999999 666
Q ss_pred CCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh-CCCcccEEEEeccCCCCCCC-
Q 002194 724 IGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH-APHLFCCGIARSGAYNRTLT- 799 (954)
Q Consensus 724 ~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~~~~~~~~~- 799 (954)
.|+|.+.... ........|+.+.++.+ ..+++.++|||+||.+++.+++. .|+++++++.+++.......
T Consensus 55 ~G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~~~~~~~ 128 (274)
T d1a8qa_ 55 RGHGHSTPVWDGYDFDTFADDLNDLLTDL------DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKS 128 (274)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCC
T ss_pred CCCcccccccccccchhhHHHHHHHHHHh------hhhhhcccccccccchHHHHHHHhhhccceeEEEEeccCccchhh
Confidence 7888775432 23445566666665544 34689999999999998886654 57899999988764321110
Q ss_pred ---CCCCcccc------------chhh--------------------------------------hcHHHHHhcCccccc
Q 002194 800 ---PFGFQNED------------RTLW--------------------------------------EATSTYVEMSPFMSA 826 (954)
Q Consensus 800 ---~~~~~~~~------------~~~~--------------------------------------~~~~~~~~~sp~~~~ 826 (954)
........ ...+ .....+...+....+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (274)
T d1a8qa_ 129 DKNPDGVPDEVFDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDL 208 (274)
T ss_dssp SSCTTSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHH
T ss_pred hhccchhhHHHHHHHHhhhhhhhHHHhhhhhhhhhhccccchhhhhhHHHHHHHhhhccchhhhhhHHHHhhccchHHHH
Confidence 00000000 0000 000111122333456
Q ss_pred CCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCC-cccHHHHHHHHHHHHHH
Q 002194 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA-RESIMHVLWETDRWLQK 896 (954)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~-~~~~~~~~~~i~~fl~~ 896 (954)
.++++|+|+++|++|..+| .+...+....+. .++++++++++||.... .+..+.+.+.+.+||++
T Consensus 209 ~~i~~Pvlii~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~i~~~gH~~~~~~~~p~~~~~~i~~FL~k 274 (274)
T d1a8qa_ 209 KKFDIPTLVVHGDDDQVVP--IDATGRKSAQII---PNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLNK 274 (274)
T ss_dssp TTCCSCEEEEEETTCSSSC--GGGTHHHHHHHS---TTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHTC
T ss_pred HhccceeeeeccCCCCCcC--HHHHHHHHHHhC---CCCEEEEECCCCCcccccccCHHHHHHHHHHHHCc
Confidence 7889999999999999998 766544443331 23589999999997642 35567788889999863
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.64 E-value=7.3e-15 Score=153.14 Aligned_cols=215 Identities=14% Similarity=0.172 Sum_probs=139.5
Q ss_pred EEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC
Q 002194 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (954)
Q Consensus 643 ~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (954)
++++.||.+|+...+-|++ .|.||++||.+... ..| ...+..|+++||.|++ .+
T Consensus 2 ~i~~~dG~~l~y~~~G~~~--------~~~vv~lHG~~~~~-----------~~~----~~~~~~l~~~g~~vi~---~D 55 (275)
T d1a88a_ 2 TVTTSDGTNIFYKDWGPRD--------GLPVVFHHGWPLSA-----------DDW----DNQMLFFLSHGYRVIA---HD 55 (275)
T ss_dssp EEECTTSCEEEEEEESCTT--------SCEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEE---EC
T ss_pred EEEecCCCEEEEEEecCCC--------CCeEEEECCCCCCH-----------HHH----HHHHHHHHhCCCEEEE---Ee
Confidence 4678899999999987643 36788999964211 111 2356678899999999 56
Q ss_pred CCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeCh-HHHHHHHHHHhCCCcccEEEEeccCCCCCCC
Q 002194 723 IIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSY-GAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (954)
Q Consensus 723 ~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~-GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~ 799 (954)
.+|+|.+... ........+|+.+.++.+ +.+++.++|+|+ ||.++..++.++|++++.+|++++.......
T Consensus 56 ~~G~G~s~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~ 129 (275)
T d1a88a_ 56 RRGHGRSDQPSTGHDMDTYAADVAALTEAL------DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVK 129 (275)
T ss_dssp CTTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBC
T ss_pred cccccccccccccccccccccccccccccc------cccccccccccccccchhhcccccCcchhhhhhhhccccccccc
Confidence 6678877543 223456677777777765 335778888887 5666677788999999999998864221100
Q ss_pred C-C---CCc-------------------------------cccc--------hhhh------------cHHHHHhcCccc
Q 002194 800 P-F---GFQ-------------------------------NEDR--------TLWE------------ATSTYVEMSPFM 824 (954)
Q Consensus 800 ~-~---~~~-------------------------------~~~~--------~~~~------------~~~~~~~~sp~~ 824 (954)
. . ... .... ..+. ....+...+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (275)
T d1a88a_ 130 SDTNPDGLPLEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTD 209 (275)
T ss_dssp BTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHH
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhH
Confidence 0 0 000 0000 0000 000111222233
Q ss_pred ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
.+.++++|+|+++|++|..+| ..+..+.+.++ ..++++++++++||... .++.+.+.+.|.+||+
T Consensus 210 ~l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~---~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 274 (275)
T d1a88a_ 210 DLKRIDVPVLVAHGTDDQVVP--YADAAPKSAEL---LANATLKSYEGLPHGML-STHPEVLNPDLLAFVK 274 (275)
T ss_dssp HHHHCCSCEEEEEETTCSSSC--STTTHHHHHHH---STTEEEEEETTCCTTHH-HHCHHHHHHHHHHHHH
T ss_pred HHHhhccccceeecCCCCCcC--HHHHHHHHHHh---CCCCEEEEECCCCCchH-HhCHHHHHHHHHHHHc
Confidence 456789999999999999998 66655444433 23479999999999864 5667888899999986
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.63 E-value=4.7e-15 Score=147.44 Aligned_cols=110 Identities=22% Similarity=0.240 Sum_probs=92.2
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEE
Q 002194 756 AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILL 835 (954)
Q Consensus 756 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Li 835 (954)
+|+++++++|+|+||.+++.++..+|+.+.++++.++....... ........|+++
T Consensus 93 ~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~i 148 (203)
T d2r8ba1 93 YQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEPK------------------------ISPAKPTRRVLI 148 (203)
T ss_dssp HTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCCC------------------------CCCCCTTCEEEE
T ss_pred CCCceEEEEEecCHHHHHHHHHHhhhhcccceeeeccccccccc------------------------cccccccchhhc
Confidence 67889999999999999999999999999999999986431110 111234579999
Q ss_pred EEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 836 i~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
+||++|.+|| ++++++++++|+..|+++++++|++ +|.+. .+.++.+.+||.+|
T Consensus 149 ~hG~~D~~vp--~~~~~~~~~~L~~~g~~v~~~~~~g-gH~~~-----~~~~~~~~~wl~~~ 202 (203)
T d2r8ba1 149 TAGERDPICP--VQLTKALEESLKAQGGTVETVWHPG-GHEIR-----SGEIDAVRGFLAAY 202 (203)
T ss_dssp EEETTCTTSC--HHHHHHHHHHHHHHSSEEEEEEESS-CSSCC-----HHHHHHHHHHHGGG
T ss_pred cccCCCCccc--HHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHHHHHHHHHHHhc
Confidence 9999999999 9999999999999999999999997 79975 34567789999875
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.63 E-value=9e-14 Score=148.17 Aligned_cols=239 Identities=13% Similarity=0.059 Sum_probs=150.3
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
...++++|||+.|||.... .+.+|++.. + ...+.++++. ..
T Consensus 20 ~~~~a~~~~g~~l~~~~~~----------------------------------~v~i~~~~~-~--~~~~~~~~H~--~~ 60 (311)
T d1nr0a1 20 AVVLGNTPAGDKIQYCNGT----------------------------------SVYTVPVGS-L--TDTEIYTEHS--HQ 60 (311)
T ss_dssp CCCCEECTTSSEEEEEETT----------------------------------EEEEEETTC-S--SCCEEECCCS--SC
T ss_pred eEEEEEcCCCCEEEEEeCC----------------------------------EEEEEECCC-C--ceeEEEcCCC--CC
Confidence 3467899999999998764 688999853 2 2333444432 47
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceee--cccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP--LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~--lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
+..+.|||||++|+... ....|.++++.+++... ....... .+..+.|+|||+.|+.....
T Consensus 61 v~~~~~sp~g~~latg~---------~dg~i~iwd~~~~~~~~~~~~~~~~~----~v~~v~~s~d~~~l~~~~~~---- 123 (311)
T d1nr0a1 61 TTVAKTSPSGYYCASGD---------VHGNVRIWDTTQTTHILKTTIPVFSG----PVKDISWDSESKRIAAVGEG---- 123 (311)
T ss_dssp EEEEEECTTSSEEEEEE---------TTSEEEEEESSSTTCCEEEEEECSSS----CEEEEEECTTSCEEEEEECC----
T ss_pred EEEEEEeCCCCeEeccc---------cCceEeeeeeeccccccccccccccC----cccccccccccccccccccc----
Confidence 89999999999998754 24567777877654321 1121221 26789999999988876210
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-ccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~-~~~~~~~~SpDGk~ 345 (954)
....+.+++. +++ ...+... ..+..++|+|||++
T Consensus 124 -------------------------------------------~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~ 160 (311)
T d1nr0a1 124 -------------------------------------------RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF 160 (311)
T ss_dssp -------------------------------------------SSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSC
T ss_pred -------------------------------------------cccccccccccccccccccccccccccccccccccee
Confidence 0111334455 443 3334433 66788999999998
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
++.+... ++.+.+||+++.+....... ....+..+.|+|||+.++..
T Consensus 161 ~l~sgs~------------d~~i~i~d~~~~~~~~~~~~------------~~~~i~~v~~~p~~~~l~~~--------- 207 (311)
T d1nr0a1 161 RIISGSD------------DNTVAIFEGPPFKFKSTFGE------------HTKFVHSVRYNPDGSLFAST--------- 207 (311)
T ss_dssp EEEEEET------------TSCEEEEETTTBEEEEEECC------------CSSCEEEEEECTTSSEEEEE---------
T ss_pred eeccccc------------cccccccccccccccccccc------------ccccccccccCccccccccc---------
Confidence 6554422 23799999997654433221 11345678999999976654
Q ss_pred cccccCCCeEEEEecCCCCCCCceEEe-------ecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 426 KVEVTPRDIIYTQQAEPVQGEGPEILH-------KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~-------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+..+.+.+|+. .++.....+. .+...+..++|+|||++|+..+.++ .|.++|..++
T Consensus 208 ----~~d~~v~~~d~--~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg----~v~iwd~~t~ 270 (311)
T d1nr0a1 208 ----GGDGTIVLYNG--VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK----TIKIWNVATL 270 (311)
T ss_dssp ----ETTSCEEEEET--TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTT
T ss_pred ----ccccccccccc--ccccccccccccccccccccccccccccCCCCCEEEEEeCCC----eEEEEECCCC
Confidence 33557888885 2222222221 1234567789999999988765433 3556677664
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.61 E-value=4.5e-15 Score=155.85 Aligned_cols=199 Identities=11% Similarity=0.065 Sum_probs=129.1
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc---hhhHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~a 746 (954)
-|+||++||.+.... .|..+. .....++++||.|++ .+.+|+|.+... ........+|+.+.
T Consensus 30 G~~ivllHG~~~~~~-----------~~~~~~-~~l~~~~~~g~~v~~---~D~~G~G~S~~~~~~~~~~~~~~~~i~~l 94 (283)
T d2rhwa1 30 GETVIMLHGGGPGAG-----------GWSNYY-RNVGPFVDAGYRVIL---KDSPGFNKSDAVVMDEQRGLVNARAVKGL 94 (283)
T ss_dssp SSEEEEECCCSTTCC-----------HHHHHT-TTHHHHHHTTCEEEE---ECCTTSTTSCCCCCSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCChh-----------HHHHHH-HHHHHHHHCCCEEEE---EeCCCCcccccccccccccchhhhhcccc
Confidence 367888999642211 111111 113356789999999 666788877542 22233345666666
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC--CCCCCc--------------------
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL--TPFGFQ-------------------- 804 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~--~~~~~~-------------------- 804 (954)
++.+ +.+++.++|||+||.+++.++.++|++++++|++++..-... ......
T Consensus 95 i~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (283)
T d2rhwa1 95 MDAL------DIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQM 168 (283)
T ss_dssp HHHH------TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHH
T ss_pred cccc------cccccccccccchHHHHHHHHHHhhhhcceEEEeCCCcCCcchhhhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 5554 335899999999999999999999999999999986421110 000000
Q ss_pred -------ccc------chhhh----cHHH------------HHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHH
Q 002194 805 -------NED------RTLWE----ATST------------YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (954)
Q Consensus 805 -------~~~------~~~~~----~~~~------------~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (954)
... ...+. .... ....+....+.++++|+|+++|++|..+| ++.++++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~ 246 (283)
T d2rhwa1 169 LQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVP--LDHGLKLL 246 (283)
T ss_dssp HHHHCSCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSC--THHHHHHH
T ss_pred HHHhhcccccCcHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchHHHHhhCCCCEEEEEeCCCCCcC--HHHHHHHH
Confidence 000 00000 0000 01123344566789999999999999998 88888887
Q ss_pred HHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 856 NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 856 ~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
+.+. ++++++++++||... .++.+.+.+.|.+||++
T Consensus 247 ~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~FLk~ 282 (283)
T d2rhwa1 247 WNID----DARLHVFSKCGHWAQ-WEHADEFNRLVIDFLRH 282 (283)
T ss_dssp HHSS----SEEEEEESSCCSCHH-HHTHHHHHHHHHHHHHH
T ss_pred HhCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHHhC
Confidence 7663 468999999999763 56677888899999875
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.61 E-value=4.7e-15 Score=150.46 Aligned_cols=200 Identities=10% Similarity=0.036 Sum_probs=127.9
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAAV 747 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av 747 (954)
.+.||++||.... ...| ...+..|+++||.|++ .+.+|+|.+... .........++..++
T Consensus 11 ~~~vvliHG~~~~-----------~~~~----~~l~~~L~~~G~~v~~---~D~~G~G~s~~~~~~~~~~~~~~~~~~~~ 72 (242)
T d1tqha_ 11 ERAVLLLHGFTGN-----------SADV----RMLGRFLESKGYTCHA---PIYKGHGVPPEELVHTGPDDWWQDVMNGY 72 (242)
T ss_dssp SCEEEEECCTTCC-----------THHH----HHHHHHHHHTTCEEEE---CCCTTSSSCHHHHTTCCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCC-----------HHHH----HHHHHHHHHCCCEEEE---EeCCCCccccccccccchhHHHHHHHHHH
Confidence 3567889996311 0111 2466788899999999 666788877542 223344555666666
Q ss_pred HHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCcc----------ccchhhh-----
Q 002194 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN----------EDRTLWE----- 812 (954)
Q Consensus 748 ~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~----------~~~~~~~----- 812 (954)
..+... +.++++++|||+||.+++.++.++|.... +++++..........+.. .......
T Consensus 73 ~~~~~~---~~~~~~l~G~S~Gg~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (242)
T d1tqha_ 73 EFLKNK---GYEKIAVAGLSLGGVFSLKLGYTVPIEGI--VTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQE 147 (242)
T ss_dssp HHHHHH---TCCCEEEEEETHHHHHHHHHHTTSCCSCE--EEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred hhhhhc---ccCceEEEEcchHHHHhhhhcccCccccc--ccccccccccchhHHHHHHHHHHHHHhhhccchhhhHHHH
Confidence 666554 34689999999999999999999976443 333322111100000000 0000000
Q ss_pred ------------cHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCc
Q 002194 813 ------------ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880 (954)
Q Consensus 813 ------------~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 880 (954)
.............+..+++|+|++||++|..+| ++.++++++.++ +.++++++++++||.....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lii~g~~D~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~ 223 (242)
T d1tqha_ 148 MEKFKQTPMKTLKALQELIADVRDHLDLIYAPTFVVQARHDEMIN--PDSANIIYNEIE--SPVKQIKWYEQSGHVITLD 223 (242)
T ss_dssp HHHHTTSCCTTHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSC--TTHHHHHHHHCC--CSSEEEEEETTCCSSGGGS
T ss_pred HhhhhhhccchhhcccccccccccccceeccccceeecccCCccC--HHHHHHHHHHcC--CCCcEEEEECCCCCcCccc
Confidence 000000111233556788999999999999998 899999988764 3458999999999987545
Q ss_pred ccHHHHHHHHHHHHHH
Q 002194 881 ESIMHVLWETDRWLQK 896 (954)
Q Consensus 881 ~~~~~~~~~i~~fl~~ 896 (954)
...+.+.+.|.+||++
T Consensus 224 ~~~~~~~~~i~~Fl~~ 239 (242)
T d1tqha_ 224 QEKDQLHEDIYAFLES 239 (242)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 5678899999999986
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.5e-13 Score=146.42 Aligned_cols=287 Identities=13% Similarity=0.107 Sum_probs=175.5
Q ss_pred eeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceee-cccCCCccccccccceeEecCCeEE
Q 002194 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP-LFQSPDIYLNAIFDNFVWVNNSTLL 258 (954)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wspDG~~l 258 (954)
+.+..+.+...+..++|||||++|+... +..|.++|+..+.... +...........+..++|+|||+.|
T Consensus 43 ~~~~~~~H~~~V~~v~fs~~g~~latg~----------dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l 112 (337)
T d1gxra_ 43 RQINTLNHGEVVCAVTISNPTRHVYTGG----------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTL 112 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSSSEEEEEC----------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEE
T ss_pred eEEEECCCCCcEEEEEECCCCCEEEEEE----------CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEE
Confidence 3443343445788999999999988742 2357777876643322 1111100111226789999999998
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC--c-eeEcCCC-cc
Q 002194 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--T-VKEIGPP-AV 333 (954)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G--~-~~~l~~~-~~ 333 (954)
+... ....|.++++ .. . ...+... ..
T Consensus 113 ~s~~-------------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~ 143 (337)
T d1gxra_ 113 IVGG-------------------------------------------------EASTLSIWDLAAPTPRIKAELTSSAPA 143 (337)
T ss_dssp EEEE-------------------------------------------------SSSEEEEEECCCC--EEEEEEECSSSC
T ss_pred EEee-------------------------------------------------ccccccccccccccccccccccccccc
Confidence 8661 1123556665 22 2 2223333 55
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i 413 (954)
+....|+||+..++..+.+ ..+.+|++.+++....... ....+..++|+++++.+
T Consensus 144 v~~~~~~~~~~~l~s~~~d-------------~~i~~~~~~~~~~~~~~~~------------~~~~v~~l~~s~~~~~~ 198 (337)
T d1gxra_ 144 CYALAISPDSKVCFSCCSD-------------GNIAVWDLHNQTLVRQFQG------------HTDGASCIDISNDGTKL 198 (337)
T ss_dssp EEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEECC------------CSSCEEEEEECTTSSEE
T ss_pred ccccccccccccccccccc-------------ccccccccccccccccccc------------ccccccccccccccccc
Confidence 6778899999999877633 3789999987665433221 11334678999999877
Q ss_pred eEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCC
Q 002194 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV 493 (954)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~ 493 (954)
++. +..+.+.+|++ ..++..........+..++|+|+++.|+....++ .+.+++..++
T Consensus 199 ~~~-------------~~d~~v~i~d~---~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~----~i~i~d~~~~-- 256 (337)
T d1gxra_ 199 WTG-------------GLDNTVRSWDL---REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESS----NVEVLHVNKP-- 256 (337)
T ss_dssp EEE-------------ETTSEEEEEET---TTTEEEEEEECSSCEEEEEECTTSSEEEEEETTS----CEEEEETTSS--
T ss_pred ccc-------------ccccccccccc---ccceeecccccccceEEEEEcccccccceecccc----cccccccccc--
Confidence 665 33567889986 4443333344566677899999999988765443 3555666654
Q ss_pred CcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcc
Q 002194 494 APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKE 573 (954)
Q Consensus 494 ~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 573 (954)
+ ......+...+.. +.|+|||++++.... ...|++||+.+++..........
T Consensus 257 ~-~~~~~~~~~~i~~------v~~s~~g~~l~s~s~---------------------Dg~i~iwd~~~~~~~~~~~~~~~ 308 (337)
T d1gxra_ 257 D-KYQLHLHESCVLS------LKFAYCGKWFVSTGK---------------------DNLLNAWRTPYGASIFQSKESSS 308 (337)
T ss_dssp C-EEEECCCSSCEEE------EEECTTSSEEEEEET---------------------TSEEEEEETTTCCEEEEEECSSC
T ss_pred c-cccccccccccce------EEECCCCCEEEEEeC---------------------CCeEEEEECCCCCEEEEccCCCC
Confidence 2 2222222222333 789999998877651 23599999998887655443321
Q ss_pred cccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEEC
Q 002194 574 KYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSW 616 (954)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~ 616 (954)
+.. .+||||++.|+.... -..+++|++
T Consensus 309 -----v~~-------~~~s~d~~~l~t~s~----D~~I~vWdl 335 (337)
T d1gxra_ 309 -----VLS-------CDISVDDKYIVTGSG----DKKATVYEV 335 (337)
T ss_dssp -----EEE-------EEECTTSCEEEEEET----TSCEEEEEE
T ss_pred -----EEE-------EEEeCCCCEEEEEeC----CCeEEEEEE
Confidence 222 468999987764322 234777763
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.60 E-value=3.5e-14 Score=150.16 Aligned_cols=271 Identities=11% Similarity=0.077 Sum_probs=156.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++|+..+.+ +.|.+|++.+ ++..+.....+..
T Consensus 14 ~V~~l~~s~dg~~l~s~s~D---------------------------------g~v~vWd~~~----~~~~~~~~~~h~~ 56 (299)
T d1nr0a2 14 AITALSSSADGKTLFSADAE---------------------------------GHINSWDIST----GISNRVFPDVHAT 56 (299)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SCEEEEETTT----CCEEECSSCSCSS
T ss_pred CcEEEEECCCCCEEEEEcCC---------------------------------CeEEEEECCC----CcEEEEEcCCCCC
Confidence 46678999999999988775 5799999954 3322221111223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....|+|||+.++. . . ...+.+++..+........... .....+..+.|+|||+.++..
T Consensus 57 ~v~~v~~~~~g~~~~~-~-------~--d~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~g~~~~~~-------- 117 (299)
T d1nr0a2 57 MITGIKTTSKGDLFTV-S-------W--DDHLKVVPAGGSGVDSSKAVAN-KLSSQPLGLAVSADGDIAVAA-------- 117 (299)
T ss_dssp CEEEEEECTTSCEEEE-E-------T--TTEEEEECSSSSSSCTTSCCEE-ECSSCEEEEEECTTSSCEEEE--------
T ss_pred cEEEEEeeccceeecc-c-------c--eeeEEEeccCCccccccccccc-ccccccccccccccccccccc--------
Confidence 6788999999975443 2 1 3466667765543221111100 011124578899999977755
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCCccccccccCCCCcEEEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILIS 349 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~~~~~~~~~SpDGk~l~~~ 349 (954)
....+.+++. ++...+........++|+|||+.|+..
T Consensus 118 ------------------------------------------~~~~i~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g 154 (299)
T d1nr0a2 118 ------------------------------------------CYKHIAIYSH-GKLTEVPISYNSSCVALSNDKQFVAVG 154 (299)
T ss_dssp ------------------------------------------ESSEEEEEET-TEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred ------------------------------------------cccccccccc-ccccccccccccccccccccccccccc
Confidence 1122334442 222222222345567899999999887
Q ss_pred eecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccc
Q 002194 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEV 429 (954)
Q Consensus 350 s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~ 429 (954)
+.+ +.+.+||++++....+.... ....+..++|+||++.++..
T Consensus 155 ~~d-------------g~i~~~d~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~------------- 197 (299)
T d1nr0a2 155 GQD-------------SKVHVYKLSGASVSEVKTIV-----------HPAEITSVAFSNNGAFLVAT------------- 197 (299)
T ss_dssp ETT-------------SEEEEEEEETTEEEEEEEEE-----------CSSCEEEEEECTTSSEEEEE-------------
T ss_pred ccc-------------cccccccccccccccccccc-----------cccccccccccccccccccc-------------
Confidence 633 38999999877654433211 11345678999999876655
Q ss_pred cCCCeEEEEecCCCCCCCc---eEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCc
Q 002194 430 TPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDV 506 (954)
Q Consensus 430 ~~~~~l~~~~~~~~~g~~~---~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~ 506 (954)
+..+.+++|++ .++... ..+..+...+..++|+|+|+.|+..+.++. |.++++.++...+...........
T Consensus 198 ~~d~~i~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~----i~iwd~~~~~~~~~~~~~~~~~~~ 271 (299)
T d1nr0a2 198 DQSRKVIPYSV--ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS----VIVWNMNKPSDHPIIIKGAHAMSS 271 (299)
T ss_dssp ETTSCEEEEEG--GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC----EEEEETTCTTSCCEEETTSSTTSC
T ss_pred ccccccccccc--cccccccccccccccccccccccccccccceEEEcCCCE----EEEEECCCCCcceEEEecCCCCCc
Confidence 33557888886 222221 122334556778899999999988765442 444455554223333322211111
Q ss_pred cCCCCCCCeeeccCCcEEEEEE
Q 002194 507 YSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 507 ~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.. ..+++++++|+...
T Consensus 272 v~------~~~~~~~~~l~s~s 287 (299)
T d1nr0a2 272 VN------SVIWLNETTIVSAG 287 (299)
T ss_dssp EE------EEEEEETTEEEEEE
T ss_pred EE------EEEECCCCEEEEEe
Confidence 11 23556777776554
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=7.4e-15 Score=157.24 Aligned_cols=215 Identities=14% Similarity=0.092 Sum_probs=138.0
Q ss_pred EEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC
Q 002194 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (954)
Q Consensus 643 ~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (954)
.++..||.+|+..-. + + -|+||++||.+.... .| ...+..|+++||.|++ .+
T Consensus 15 ~v~~~~g~~i~y~~~---G-----~--gp~vlllHG~~~~~~-----------~~----~~~~~~L~~~g~~vi~---~D 66 (322)
T d1zd3a2 15 YVTVKPRVRLHFVEL---G-----S--GPAVCLCHGFPESWY-----------SW----RYQIPALAQAGYRVLA---MD 66 (322)
T ss_dssp EEEEETTEEEEEEEE---C-----C--SSEEEEECCTTCCGG-----------GG----TTHHHHHHHTTCEEEE---EE
T ss_pred EEEECCCCEEEEEEE---c-----C--CCeEEEECCCCCCHH-----------HH----HHHHHHHHHCCCEEEE---ec
Confidence 445568998886654 2 2 378999999643211 12 1356778899999999 66
Q ss_pred CCCCCCcccchh----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC
Q 002194 723 IIGEGDEEANDR----FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (954)
Q Consensus 723 ~~G~G~~~~~~~----~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (954)
.+|+|.+..... .......|+.+.++.+ +.+++.++||||||.+++.+|.++|++++++|++++......
T Consensus 67 ~~G~G~S~~~~~~~~~~~~~~~~~i~~l~~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~ 140 (322)
T d1zd3a2 67 MKGYGESSAPPEIEEYCMEVLCKEMVTFLDKL------GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPAN 140 (322)
T ss_dssp CTTSTTSCCCSCGGGGSHHHHHHHHHHHHHHH------TCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCCCC
T ss_pred cccccccccccccccccccccchhhhhhhhcc------cccccccccccchHHHHHHHHHhCCccccceEEEcccccccc
Confidence 678887754321 2334445555544443 346899999999999999999999999999998875321100
Q ss_pred CCC----------------------------------------------C-----------Ccc----c---cchhhh-c
Q 002194 799 TPF----------------------------------------------G-----------FQN----E---DRTLWE-A 813 (954)
Q Consensus 799 ~~~----------------------------------------------~-----------~~~----~---~~~~~~-~ 813 (954)
... . ... . .....+ .
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
T d1zd3a2 141 PNMSPLESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEE 220 (322)
T ss_dssp SSSCHHHHHHTCGGGHHHHHTTSTTHHHHHHHHTHHHHHHHHSCCTTSCCCCTTSHHHHTSSSTTSCSSCCCCTTCCHHH
T ss_pred cccchhhhhhccchhhhHHhhhccchhhhhhhhhHHHHHHHHhhccchhhhhHHHHhhhhccccccccchhhhhhccHHH
Confidence 000 0 000 0 000000 0
Q ss_pred H----HHH------------------HhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC
Q 002194 814 T----STY------------------VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP 871 (954)
Q Consensus 814 ~----~~~------------------~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~ 871 (954)
. ..+ ...++.....++++|+|+++|++|..++ ++..+++.+.+ .+.++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvl~i~G~~D~~~~--~~~~~~~~~~~----~~~~~~~i~ 294 (322)
T d1zd3a2 221 IQFYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLV--PQMSQHMEDWI----PHLKRGHIE 294 (322)
T ss_dssp HHHHHHHHHHHTTHHHHHTTSCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSC--GGGGTTGGGTC----TTCEEEEET
T ss_pred HHHHHHHHhhcccccccccccccccccccchhhhcccCCCCEEEEEeCCCCCCC--HHHHHHHHHhC----CCCEEEEEC
Confidence 0 000 0111223346788999999999999998 77666554433 346888999
Q ss_pred CCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 872 FESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 872 ~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
++||... .+..+++.+.|.+||+.+-
T Consensus 295 ~~gH~~~-~e~p~~v~~~i~~FL~~~~ 320 (322)
T d1zd3a2 295 DCGHWTQ-MDKPTEVNQILIKWLDSDA 320 (322)
T ss_dssp TCCSCHH-HHSHHHHHHHHHHHHHHHT
T ss_pred CCCCchH-HhCHHHHHHHHHHHHhhcC
Confidence 9999763 5667788899999999863
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.60 E-value=1.7e-14 Score=151.25 Aligned_cols=211 Identities=18% Similarity=0.127 Sum_probs=131.4
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002194 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (954)
Q Consensus 648 ~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G 727 (954)
++.+++....-+++ .|+||++||.+.... .+..+. .....| ++||.|++ .+.+|+|
T Consensus 12 ~~~~~h~~~~G~~~--------~p~ivllHG~~~~~~-----------~~~~~~-~~~~~L-~~~~~vi~---~D~~G~G 67 (281)
T d1c4xa_ 12 GTLASHALVAGDPQ--------SPAVVLLHGAGPGAH-----------AASNWR-PIIPDL-AENFFVVA---PDLIGFG 67 (281)
T ss_dssp TTSCEEEEEESCTT--------SCEEEEECCCSTTCC-----------HHHHHG-GGHHHH-HTTSEEEE---ECCTTST
T ss_pred CCEEEEEEEEecCC--------CCEEEEECCCCCCCc-----------HHHHHH-HHHHHH-hCCCEEEE---EeCCCCc
Confidence 55778877765432 589999999531110 000011 123333 56999999 6777888
Q ss_pred Ccccch---hh----HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC
Q 002194 728 DEEAND---RF----VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800 (954)
Q Consensus 728 ~~~~~~---~~----~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~ 800 (954)
.+.... .. ....++|+.+.++.+ ..+++.++||||||.+++.++.++|++++++|++++........
T Consensus 68 ~S~~~~~~~~~~~~~~~~~~~~i~~~i~~~------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~~~~~~~~ 141 (281)
T d1c4xa_ 68 QSEYPETYPGHIMSWVGMRVEQILGLMNHF------GIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNAR 141 (281)
T ss_dssp TSCCCSSCCSSHHHHHHHHHHHHHHHHHHH------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSC
T ss_pred cccccccccccchhhHHHhhhhcccccccc------ccccceeccccccccccccccccccccccceEEeccccCccccc
Confidence 875421 11 222333444433332 23589999999999999999999999999999988743211100
Q ss_pred -------------------------CCCcccc-chh-------hh---cH-------HHHH--------hcCcccccCCC
Q 002194 801 -------------------------FGFQNED-RTL-------WE---AT-------STYV--------EMSPFMSANKL 829 (954)
Q Consensus 801 -------------------------~~~~~~~-~~~-------~~---~~-------~~~~--------~~sp~~~~~~~ 829 (954)
+.+.... ... +. .. ..+. ...+...+.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 221 (281)
T d1c4xa_ 142 PPELARLLAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRL 221 (281)
T ss_dssp CHHHHHHHTGGGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTC
T ss_pred hhHHHHHHHhhhhcccchhhhhhhhhcccccccchhhhHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccchhhhhhh
Confidence 0000000 000 00 00 0000 01222345778
Q ss_pred CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
++|+|+++|++|..+| ++.++++.+.++ +++++++|++||... .+..+.+.+.+.+||+
T Consensus 222 ~~P~lii~G~~D~~~~--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 280 (281)
T d1c4xa_ 222 PHDVLVFHGRQDRIVP--LDTSLYLTKHLK----HAELVVLDRCGHWAQ-LERWDAMGPMLMEHFR 280 (281)
T ss_dssp CSCEEEEEETTCSSSC--THHHHHHHHHCS----SEEEEEESSCCSCHH-HHSHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCCCcC--HHHHHHHHHHCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHhC
Confidence 9999999999999998 888888776553 368999999999864 5667888888999985
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.59 E-value=3.2e-14 Score=147.99 Aligned_cols=213 Identities=16% Similarity=0.161 Sum_probs=135.5
Q ss_pred EEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC
Q 002194 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (954)
Q Consensus 643 ~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (954)
+|++.||.+|+.... + + -|.||++||.+.... .| ......|+++||.|++ .+
T Consensus 2 ~f~~~dG~~i~y~~~---G-----~--g~pvvllHG~~~~~~-----------~~----~~~~~~l~~~~~~vi~---~D 53 (273)
T d1a8sa_ 2 TFTTRDGTQIYYKDW---G-----S--GQPIVFSHGWPLNAD-----------SW----ESQMIFLAAQGYRVIA---HD 53 (273)
T ss_dssp EEECTTSCEEEEEEE---S-----C--SSEEEEECCTTCCGG-----------GG----HHHHHHHHHTTCEEEE---EC
T ss_pred EEEeeCCcEEEEEEE---C-----C--CCeEEEECCCCCCHH-----------HH----HHHHHHHHhCCCEEEE---Ee
Confidence 578899999977654 1 1 245778999642111 11 2346678899999999 66
Q ss_pred CCCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHH-HHhCCCcccEEEEeccCCCCCCC
Q 002194 723 IIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL-LAHAPHLFCCGIARSGAYNRTLT 799 (954)
Q Consensus 723 ~~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~-a~~~p~~~~a~v~~~~~~~~~~~ 799 (954)
.+|+|.+.... .......+|+.+.++.+ +.++..++|||+||.+++.+ +.+.|++++.++++++.......
T Consensus 54 ~~G~G~S~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~~~~~~ 127 (273)
T d1a8sa_ 54 RRGHGRSSQPWSGNDMDTYADDLAQLIEHL------DLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLK 127 (273)
T ss_dssp CTTSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBC
T ss_pred chhcCccccccccccccchHHHHHHHHHhc------CccceeeeeeccCCccchhhhhhhhhhccceeEEEecccccccc
Confidence 67888775432 23445566666665553 33578899999988666554 55678999999888764321110
Q ss_pred C----CCCcc-------------------------------ccchh--------hh------------cHHHHHhcCccc
Q 002194 800 P----FGFQN-------------------------------EDRTL--------WE------------ATSTYVEMSPFM 824 (954)
Q Consensus 800 ~----~~~~~-------------------------------~~~~~--------~~------------~~~~~~~~sp~~ 824 (954)
. ..... ..... +. ....+...+...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (273)
T d1a8sa_ 128 TEANPGGLPMEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTE 207 (273)
T ss_dssp CSSCTTSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHH
T ss_pred cccccccchhhhhhhHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHHhhcccchhhhhhhHHHhhhhhhhH
Confidence 0 00000 00000 00 001112223334
Q ss_pred ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
.+.++++|+|+++|++|..+| .+...++.+.+.. .++++++|++||... .++.+.+.+.|.+||+
T Consensus 208 ~~~~i~~Pvlii~g~~D~~~~--~~~~~~~~~~~~~---~~~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 272 (273)
T d1a8sa_ 208 DLKKIDVPTLVVHGDADQVVP--IEASGIASAALVK---GSTLKIYSGAPHGLT-DTHKDQLNADLLAFIK 272 (273)
T ss_dssp HHHTCCSCEEEEEETTCSSSC--STTTHHHHHHHST---TCEEEEETTCCSCHH-HHTHHHHHHHHHHHHH
T ss_pred HHHhhccceEEEecCCCCCCC--HHHHHHHHHHhCC---CCEEEEECCCCCchH-HhCHHHHHHHHHHHcC
Confidence 557889999999999999998 7777777665522 368889999999863 5677888889999986
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.59 E-value=2.9e-14 Score=147.91 Aligned_cols=214 Identities=14% Similarity=0.146 Sum_probs=135.6
Q ss_pred EEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC
Q 002194 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (954)
Q Consensus 643 ~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (954)
+|.+.||.+|+...+ + + -|.||++||++.... .| ...+..|+++||.|++ .+
T Consensus 2 ~f~~~dG~~l~y~~~---G-----~--g~~vv~lHG~~~~~~-----------~~----~~~~~~l~~~g~~vi~---~D 53 (271)
T d1va4a_ 2 TFVAKDGTQIYFKDW---G-----S--GKPVLFSHGWLLDAD-----------MW----EYQMEYLSSRGYRTIA---FD 53 (271)
T ss_dssp EEECTTSCEEEEEEE---S-----S--SSEEEEECCTTCCGG-----------GG----HHHHHHHHTTTCEEEE---EC
T ss_pred EEEeECCeEEEEEEE---c-----C--CCeEEEECCCCCCHH-----------HH----HHHHHHHHhCCCEEEE---Ee
Confidence 467789999986554 1 1 355788999642111 11 2345678889999999 66
Q ss_pred CCCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH-HHHhCCCcccEEEEeccCCCCCCC
Q 002194 723 IIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN-LLAHAPHLFCCGIARSGAYNRTLT 799 (954)
Q Consensus 723 ~~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~-~a~~~p~~~~a~v~~~~~~~~~~~ 799 (954)
..|+|.+.... .......+|+.+.++.+ +.+++.++|||+||.+++. ++.++|++++.++.+++.......
T Consensus 54 ~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~~~~~~ 127 (271)
T d1va4a_ 54 RRGFGRSDQPWTGNDYDTFADDIAQLIEHL------DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQ 127 (271)
T ss_dssp CTTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBC
T ss_pred ccccccccccccccccccccccceeeeeec------CCCcceeeccccccccccccccccccceeeEEEeeccccccccc
Confidence 67888775432 23345555655555443 4468999999998876654 566788999999988765432111
Q ss_pred CCCCcccc------c---h------------------------hhh--------------------cHHHHHhcCccccc
Q 002194 800 PFGFQNED------R---T------------------------LWE--------------------ATSTYVEMSPFMSA 826 (954)
Q Consensus 800 ~~~~~~~~------~---~------------------------~~~--------------------~~~~~~~~sp~~~~ 826 (954)
........ . . ..+ ....+...+....+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 207 (271)
T d1va4a_ 128 KPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDM 207 (271)
T ss_dssp BTTBTTSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHH
T ss_pred chhhhhhhhhhHHHHHHHHhhhhhhhhhhhhcchhhcccchhhhhhhHHHHHHhhhhhhhhhhhhhcccccchhhhhhhh
Confidence 00000000 0 0 000 00111112233345
Q ss_pred CCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.++++|+|+++|++|..+| +....++.+.+.. .++++++|++||... .++.+.+.+.|.+||++
T Consensus 208 ~~i~~Pvl~i~g~~D~~~~--~~~~~~~~~~~~~---~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fL~k 271 (271)
T d1va4a_ 208 AKIDVPTLVIHGDGDQIVP--FETTGKVAAELIK---GAELKVYKDAPHGFA-VTHAQQLNEDLLAFLKR 271 (271)
T ss_dssp HHCCSCEEEEEETTCSSSC--GGGTHHHHHHHST---TCEEEEETTCCTTHH-HHTHHHHHHHHHHHHTC
T ss_pred hhcccceeecccCCCCCCC--HHHHHHHHHHhCC---CCEEEEECCCCCchH-HhCHHHHHHHHHHHHCc
Confidence 6788999999999999998 8887777665532 368889999999763 45677888889999863
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.58 E-value=3.5e-13 Score=143.47 Aligned_cols=251 Identities=9% Similarity=0.026 Sum_probs=156.5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
....++++|||+.|+|.. ...+++++++.++..++....... +..++|+|||++|+...
T Consensus 19 ~~~~~a~~~~g~~l~~~~----------~~~v~i~~~~~~~~~~~~~~H~~~----v~~~~~sp~g~~latg~------- 77 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCN----------GTSVYTVPVGSLTDTEIYTEHSHQ----TTVAKTSPSGYYCASGD------- 77 (311)
T ss_dssp CCCCCEECTTSSEEEEEE----------TTEEEEEETTCSSCCEEECCCSSC----EEEEEECTTSSEEEEEE-------
T ss_pred CeEEEEEcCCCCEEEEEe----------CCEEEEEECCCCceeEEEcCCCCC----EEEEEEeCCCCeEeccc-------
Confidence 445678999999999975 346899999887665554333222 77899999999998661
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc--e-eEcCCC-ccccccccCCCCc
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--V-KEIGPP-AVYTSLDPSPDEK 344 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~--~-~~l~~~-~~~~~~~~SpDGk 344 (954)
....|.++++ ++. . ..+... ..+..++|+|||+
T Consensus 78 ------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 115 (311)
T d1nr0a1 78 ------------------------------------------VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK 115 (311)
T ss_dssp ------------------------------------------TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred ------------------------------------------cCceEeeeeeeccccccccccccccCcccccccccccc
Confidence 1234666677 442 1 223333 6778899999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
+|+..+... ...+.+|+.+.++. ..+.. ....+..+.|+|||+.++.. .
T Consensus 116 ~l~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~-------------h~~~v~~v~~~~~~~~~l~s-g----- 165 (311)
T d1nr0a1 116 RIAAVGEGR-----------ERFGHVFLFDTGTSNGNLTG-------------QARAMNSVDFKPSRPFRIIS-G----- 165 (311)
T ss_dssp EEEEEECCS-----------SCSEEEEETTTCCBCBCCCC-------------CSSCEEEEEECSSSSCEEEE-E-----
T ss_pred ccccccccc-----------cccccccccccccccccccc-------------cccccccccccccceeeecc-c-----
Confidence 999887432 12467888875432 22222 12345678999999865443 1
Q ss_pred CccccccCCCeEEEEecCCCCCCCc-eEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCC
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 502 (954)
+..+.|.+|++ .+++. ..+..+...+..+.|+|||+.|+....++. +.+++...+ .........
T Consensus 166 ------s~d~~i~i~d~---~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~----v~~~d~~~~--~~~~~~~~~ 230 (311)
T d1nr0a1 166 ------SDDNTVAIFEG---PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT----IVLYNGVDG--TKTGVFEDD 230 (311)
T ss_dssp ------ETTSCEEEEET---TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC----EEEEETTTC--CEEEECBCT
T ss_pred ------ccccccccccc---cccccccccccccccccccccCcccccccccccccc----ccccccccc--ccccccccc
Confidence 23457888986 43333 333445666788999999999888765433 444455543 222222221
Q ss_pred CCCccCCC-CCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEec
Q 002194 503 SEDVYSDP-GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (954)
Q Consensus 503 ~~~~~~~~-~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 569 (954)
.....+.. .-..++|+|||++|+.... ...|++||+++++..+...
T Consensus 231 ~~~~~~h~~~V~~~~~s~~~~~l~tgs~---------------------Dg~v~iwd~~t~~~~~~l~ 277 (311)
T d1nr0a1 231 SLKNVAHSGSVFGLTWSPDGTKIASASA---------------------DKTIKIWNVATLKVEKTIP 277 (311)
T ss_dssp TSSSCSSSSCEEEEEECTTSSEEEEEET---------------------TSEEEEEETTTTEEEEEEE
T ss_pred ccccccccccccccccCCCCCEEEEEeC---------------------CCeEEEEECCCCcEEEEEE
Confidence 11111000 0011789999999887652 1249999999998665443
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.58 E-value=1.4e-14 Score=150.40 Aligned_cols=213 Identities=15% Similarity=0.137 Sum_probs=133.4
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (954)
+.||.+++.... + + -|.||++||++.... .+..+. ... ...++||.|++ .+..|
T Consensus 8 ~~dg~~l~y~~~---G-----~--g~~vvllHG~~~~~~-----------~~~~~~-~~~-~~l~~~~~v~~---~D~~G 61 (268)
T d1j1ia_ 8 NAGGVETRYLEA---G-----K--GQPVILIHGGGAGAE-----------SEGNWR-NVI-PILARHYRVIA---MDMLG 61 (268)
T ss_dssp EETTEEEEEEEE---C-----C--SSEEEEECCCSTTCC-----------HHHHHT-TTH-HHHTTTSEEEE---ECCTT
T ss_pred EECCEEEEEEEE---c-----C--CCeEEEECCCCCCcc-----------HHHHHH-HHH-HHHhcCCEEEE---Ecccc
Confidence 358998875432 2 2 256888999631110 000001 112 23467999999 66678
Q ss_pred CCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC----
Q 002194 726 EGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---- 799 (954)
Q Consensus 726 ~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---- 799 (954)
+|.+... .........|+.+.++.+ . + ..++.++|||+||.+++.++.++|++++++|++++..-....
T Consensus 62 ~G~S~~~~~~~~~~~~~~~~~~~i~~l---~-~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~ 136 (268)
T d1j1ia_ 62 FGKTAKPDIEYTQDRRIRHLHDFIKAM---N-F-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDL 136 (268)
T ss_dssp STTSCCCSSCCCHHHHHHHHHHHHHHS---C-C-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC-----
T ss_pred cccccCCccccccccccccchhhHHHh---h-h-cccceeeeccccccccchhhccChHhhheeeecCCCccccccchhh
Confidence 8877542 233445556655554443 1 2 247999999999999999999999999999998864221100
Q ss_pred ----CCCCccc-----------------c---chhhh-------------cHHHHHh----cCcccccCCCCCCEEEEEe
Q 002194 800 ----PFGFQNE-----------------D---RTLWE-------------ATSTYVE----MSPFMSANKLKKPILLVHG 838 (954)
Q Consensus 800 ----~~~~~~~-----------------~---~~~~~-------------~~~~~~~----~sp~~~~~~~~~P~Lii~G 838 (954)
...+... . ...+. ....+.. ......+.++++|+|+++|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G 216 (268)
T d1j1ia_ 137 RPIINYDFTREGMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQG 216 (268)
T ss_dssp -----CCSCHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEE
T ss_pred hhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhhhHhhCCCCEEEEEe
Confidence 0000000 0 00000 0000001 1122346788999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
++|..+| ++.+.++.+.+. ++++++++++||... .++.+.+.+.|.+||.+
T Consensus 217 ~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~FL~~ 267 (268)
T d1j1ia_ 217 KDDKVVP--VETAYKFLDLID----DSWGYIIPHCGHWAM-IEHPEDFANATLSFLSL 267 (268)
T ss_dssp TTCSSSC--HHHHHHHHHHCT----TEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHH
T ss_pred CCCCCCC--HHHHHHHHHhCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHHcC
Confidence 9999998 888887777653 469999999999864 56678889999999975
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.58 E-value=8.9e-15 Score=143.15 Aligned_cols=161 Identities=12% Similarity=-0.070 Sum_probs=100.8
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 782 (954)
..+..|+++||.|++++. .|+|... .+|. ++.+.+.......++.++||||||.+++.++.+.|.
T Consensus 21 ~l~~~L~~~G~~v~~~d~---p~~~~~~---------~~~~---~~~l~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~~~ 85 (186)
T d1uxoa_ 21 WLKKRLLADGVQADILNM---PNPLQPR---------LEDW---LDTLSLYQHTLHENTYLVAHSLGCPAILRFLEHLQL 85 (186)
T ss_dssp HHHHHHHHTTCEEEEECC---SCTTSCC---------HHHH---HHHHHTTGGGCCTTEEEEEETTHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCCEEEEecc---CCCCcch---------HHHH---HHHHHHHHhccCCCcEEEEechhhHHHHHHHHhCCc
Confidence 466778999999999554 4555431 2222 333333333455789999999999999999999986
Q ss_pred cc--cEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHh
Q 002194 783 LF--CCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (954)
Q Consensus 783 ~~--~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~ 860 (954)
.. .++++.++......... ..... .....+.....++.+|+|++||++|.+|| +++++++++.+.
T Consensus 86 ~~~~~~l~~~~~~~~~~~~~~--~~~~~--------~~~~~~~~~~~~~~~p~lvi~g~~D~~vp--~~~~~~l~~~~~- 152 (186)
T d1uxoa_ 86 RAALGGIILVSGFAKSLPTLQ--MLDEF--------TQGSFDHQKIIESAKHRAVIASKDDQIVP--FSFSKDLAQQID- 152 (186)
T ss_dssp SSCEEEEEEETCCSSCCTTCG--GGGGG--------TCSCCCHHHHHHHEEEEEEEEETTCSSSC--HHHHHHHHHHTT-
T ss_pred cceeeEEeecccccccchhhh--hhhhh--------hcccccccccccCCCCEEEEecCCCCCCC--HHHHHHHHHHcC-
Confidence 44 34444444322111100 00000 00001111222345899999999999999 999999988762
Q ss_pred CCCcEEEEEeCCCCCcCCCc--ccHHHHHHHHHHHHH
Q 002194 861 HGALCRLVILPFESHGYAAR--ESIMHVLWETDRWLQ 895 (954)
Q Consensus 861 ~g~~~~~~~~~~~~H~~~~~--~~~~~~~~~i~~fl~ 895 (954)
++++++|++||..... .....+++.+.+||.
T Consensus 153 ----~~~~~~~~~gH~~~~~~~~~~~~~~~~l~~~~~ 185 (186)
T d1uxoa_ 153 ----AALYEVQHGGHFLEDEGFTSLPIVYDVLTSYFS 185 (186)
T ss_dssp ----CEEEEETTCTTSCGGGTCSCCHHHHHHHHHHHH
T ss_pred ----CEEEEeCCCCCcCccccCcccHHHHHHHHHHHc
Confidence 4899999999975321 223456677777765
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.57 E-value=3.7e-13 Score=150.29 Aligned_cols=324 Identities=13% Similarity=0.079 Sum_probs=170.5
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCC-CCC
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DGA 189 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~-~~~ 189 (954)
+.+++|||||++|+....+ ..+.+|++.+ ++.....++.... ...
T Consensus 64 ~~~vafSPDGk~l~~~~~d---------------------------------~~v~vwd~~t-~~~~~~~~i~~~~~~~~ 109 (426)
T d1hzua2 64 VHISRMSASGRYLLVIGRD---------------------------------ARIDMIDLWA-KEPTKVAEIKIGIEARS 109 (426)
T ss_dssp EEEEEECTTSCEEEEEETT---------------------------------SEEEEEETTS-SSCEEEEEEECCSEEEE
T ss_pred eeEEEECCCCCEEEEEeCC---------------------------------CCEEEEEccC-CceeEEEEEeCCCCCcc
Confidence 4578999999999877654 4789999864 2111112222111 111
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..+.|||||++|+.... ....+.++|..+++..++....... +....+.+++...+....
T Consensus 110 ~~~s~~~spDG~~l~v~~~--------~~~~v~i~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~s------ 171 (426)
T d1hzua2 110 VESSKFKGYEDRYTIAGAY--------WPPQFAIMDGETLEPKQIVSTRGMT----VDTQTYHPEPRVAAIIAS------ 171 (426)
T ss_dssp EEECCSTTCTTTEEEEEEE--------ESSEEEEEETTTCCEEEEEECCEEC----SSSCCEESCCCEEEEEEC------
T ss_pred eEEeeeecCCCCEEEEeec--------CCCeEEEEcCCccceeEEeeccCCC----ccceeecCCCceeEEEEC------
Confidence 4567889999999887653 2467888899888876655443322 334555566554333210
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc---eeEcCCCccccccccCCCCcE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPPAVYTSLDPSPDEKY 345 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~---~~~l~~~~~~~~~~~SpDGk~ 345 (954)
.++.... ....+...++.++. ++. ...+........+.|+|||++
T Consensus 172 --------------~d~~~~~-----------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 220 (426)
T d1hzua2 172 --------------HEHPEFI-----------------VNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRY 220 (426)
T ss_dssp --------------SSSSEEE-----------------EEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCE
T ss_pred --------------CCCCEEE-----------------EecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcE
Confidence 0000000 00002344666665 442 233333355678899999999
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
++...... ..+.+++...+........... + .......+..++...++....
T Consensus 221 ~~~a~~~~------------~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~------ 272 (426)
T d1hzua2 221 FMTAANNS------------NKVAVIDSKDRRLSALVDVGKT---P-------HPGRGANFVHPKYGPVWSTSH------ 272 (426)
T ss_dssp EEEEETTC------------SEEEEEETTTTEEEEEEECSSC---C-------CCSCCEEEEETTTEEEEEEEC------
T ss_pred EEeeeecc------------cceeeeecccccEEEEeccCCc---c-------cccceeeeecCCCCceEEecc------
Confidence 88876432 2677888886655433322110 0 000122233333222222111
Q ss_pred cccccCCCeEEEEecCCC-----CCCCceEEeecccccCceeeccCCceEEEEEecc--c-cceEEEEEcCCCCCCCcEE
Q 002194 426 KVEVTPRDIIYTQQAEPV-----QGEGPEILHKLDLRYGGISWCDDSLALVYESWYK--T-RRTRTWVISPGSKDVAPRI 497 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~-----~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~--~-~~~~l~~~d~~~~~~~~~~ 497 (954)
...+.+.+++.+.. .+.....+..+...+..++|||||++|+...... + ....|.++|++++....+.
T Consensus 273 ----~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~ 348 (426)
T d1hzua2 273 ----LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV 348 (426)
T ss_dssp ----TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred ----CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence 11223333332000 1122344555566678899999999998643211 0 0123666777765322222
Q ss_pred Eec-------CCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEecc
Q 002194 498 LFD-------RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570 (954)
Q Consensus 498 l~~-------~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 570 (954)
+.. .....+.. ++|||||+++++..... ......|.+||.+|++...+...
T Consensus 349 ~~~~~~~~~~~~~~rv~~------~~fSpDGk~i~vs~~~~----------------~~~~~~i~v~D~~T~k~~~~i~~ 406 (426)
T d1hzua2 349 LPIAEWADLGEGAKRVVQ------PEYNKRGDEVWFSVWNG----------------KNDSSALVVVDDKTLKLKAVVKD 406 (426)
T ss_dssp ECHHHHHCCCSSCCCEEE------EEECSSSSEEEEEECCC----------------TTSCCEEEEEETTTTEEEEEECC
T ss_pred eccchhcccCCCCccEEE------EEECCCCCEEEEEEecC----------------CCCCCeEEEEECCCCeEEEEECC
Confidence 211 11111111 57999999998765211 11234599999999987765544
Q ss_pred C
Q 002194 571 D 571 (954)
Q Consensus 571 ~ 571 (954)
.
T Consensus 407 ~ 407 (426)
T d1hzua2 407 P 407 (426)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.57 E-value=1.9e-14 Score=147.43 Aligned_cols=197 Identities=9% Similarity=-0.007 Sum_probs=128.2
Q ss_pred cEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh---hHHHHHHHHHHHH
Q 002194 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR---FVEQLVACAEAAV 747 (954)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~---~~~~~~~D~~~av 747 (954)
|.||++||.+.... .| ...+..|+++||.|++ .+.+|+|.+..+.. .......|+...
T Consensus 3 ~~vvllHG~~~~~~-----------~w----~~~~~~L~~~g~~vi~---~Dl~G~G~S~~~~~~~~~~~~~~~~~~~~- 63 (258)
T d1xkla_ 3 KHFVLVHGACHGGW-----------SW----YKLKPLLEAAGHKVTA---LDLAASGTDLRKIEELRTLYDYTLPLMEL- 63 (258)
T ss_dssp CEEEEECCTTCCGG-----------GG----TTHHHHHHHTTCEEEE---CCCTTSTTCCCCGGGCCSHHHHHHHHHHH-
T ss_pred CcEEEECCCCCCHH-----------HH----HHHHHHHHhCCCEEEE---ecCCCCCCCCCCCCCCcchHHHHHHHhhh-
Confidence 56888999642211 12 1356788899999999 77788998865322 223333333332
Q ss_pred HHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC----------------CC--------C
Q 002194 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP----------------FG--------F 803 (954)
Q Consensus 748 ~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~----------------~~--------~ 803 (954)
+... . ...++.++|||+||.+++.++.++|++++.+|.+++........ .. .
T Consensus 64 --~~~~-~-~~~~~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (258)
T d1xkla_ 64 --MESL-S-ADEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGS 139 (258)
T ss_dssp --HHTS-C-SSSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSC
T ss_pred --hhcc-c-ccccccccccchhHHHHHHHhhhhccccceEEEecccCCCcccchHHHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 2222 2 23579999999999999999999999999999987643211000 00 0
Q ss_pred cccc------chhh-----------hc--------------HHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHH
Q 002194 804 QNED------RTLW-----------EA--------------TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSD 852 (954)
Q Consensus 804 ~~~~------~~~~-----------~~--------------~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~ 852 (954)
.... .... +. ...+...........+.+|+|+++|++|..+| ++..+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~ 217 (258)
T d1xkla_ 140 PEEPLTSMFFGPKFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIP--EEFQR 217 (258)
T ss_dssp TTSCCEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTT--HHHHH
T ss_pred hhhhcccccccHHHHHHHhhhcccHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccccceeEeeecCCCCCC--HHHHH
Confidence 0000 0000 00 01111222333445667999999999999998 88888
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 853 RFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
.+.+.+.. +++++++++||... .+..+.+.+.|.+|+++|
T Consensus 218 ~~~~~~~~----~~~~~i~~~gH~~~-~e~P~~~~~~l~e~~~k~ 257 (258)
T d1xkla_ 218 WQIDNIGV----TEAIEIKGADHMAM-LCEPQKLCASLLEIAHKY 257 (258)
T ss_dssp HHHHHHCC----SEEEEETTCCSCHH-HHSHHHHHHHHHHHHHHC
T ss_pred HHHHHCCC----CEEEEECCCCCchH-HhCHHHHHHHHHHHHHhc
Confidence 88777642 48889999999863 567788999999999886
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.56 E-value=1.7e-13 Score=137.46 Aligned_cols=117 Identities=21% Similarity=0.159 Sum_probs=91.6
Q ss_pred CCCCCCcEEEEeeChHHHHHHHHHHh-CCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCC
Q 002194 754 GVAHPSKIAVGGHSYGAFMTANLLAH-APHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKP 832 (954)
Q Consensus 754 ~~~d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P 832 (954)
..+|++|++++|+|+||.+++.++.. .+..++++|++++......... .. .....++|
T Consensus 101 ~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~~~~~----~~-----------------~~~~~~~p 159 (218)
T d1auoa_ 101 TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFGDEL----EL-----------------SASQQRIP 159 (218)
T ss_dssp TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCCTTC----CC-----------------CHHHHTCC
T ss_pred hCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCccccccc----cc-----------------chhccCCC
Confidence 45899999999999999999988764 4567999999987532111000 00 00112579
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 833 ~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
+|++||+.|.+|| ++.++++++.|+..|.+++++.|+ .+|.+. .+.+..+.+||.+.|+
T Consensus 160 vl~~hG~~D~vvp--~~~~~~~~~~L~~~g~~~~~~~~~-~gH~i~-----~~~~~~i~~wl~~~lg 218 (218)
T d1auoa_ 160 ALCLHGQYDDVVQ--NAMGRSAFEHLKSRGVTVTWQEYP-MGHEVL-----PQEIHDIGAWLAARLG 218 (218)
T ss_dssp EEEEEETTCSSSC--HHHHHHHHHHHHTTTCCEEEEEES-CSSSCC-----HHHHHHHHHHHHHHHC
T ss_pred EEEEecCCCCccC--HHHHHHHHHHHHHCCCCEEEEEEC-CCCccC-----HHHHHHHHHHHHHhcC
Confidence 9999999999999 999999999999999999999998 589875 3457889999998873
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.56 E-value=1.1e-13 Score=144.10 Aligned_cols=197 Identities=13% Similarity=0.077 Sum_probs=123.6
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAV 747 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av 747 (954)
-|.||++||.+.... .| ...+..|+++||.|++ .+.+|+|.+.... .......+|+.+.+
T Consensus 23 G~~ivllHG~~~~~~-----------~~----~~~~~~l~~~g~~vi~---~D~~G~G~S~~~~~~~~~~~~~~dl~~~l 84 (277)
T d1brta_ 23 GQPVVLIHGFPLSGH-----------SW----ERQSAALLDAGYRVIT---YDRRGFGQSSQPTTGYDYDTFAADLNTVL 84 (277)
T ss_dssp SSEEEEECCTTCCGG-----------GG----HHHHHHHHHTTCEEEE---ECCTTSTTSCCCSSCCSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHH-----------HH----HHHHHHHHhCCCEEEE---EeCCCCCcccccccccchhhhhhhhhhhh
Confidence 366888999642211 11 2345678889999999 5667888875432 23556677777776
Q ss_pred HHHHHcCCCCCCcEEEEeeChHHH-HHHHHHHhCCCcccEEEEeccCCCCCCCC----CCCccc------------cchh
Q 002194 748 EEVVRRGVAHPSKIAVGGHSYGAF-MTANLLAHAPHLFCCGIARSGAYNRTLTP----FGFQNE------------DRTL 810 (954)
Q Consensus 748 ~~l~~~~~~d~~ri~l~G~S~GG~-~a~~~a~~~p~~~~a~v~~~~~~~~~~~~----~~~~~~------------~~~~ 810 (954)
+.+ +.+++.++||||||. ++..++.++|++++++|+++++....... ...... ....
T Consensus 85 ~~l------~~~~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (277)
T d1brta_ 85 ETL------DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYA 158 (277)
T ss_dssp HHH------TCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHH
T ss_pred hcc------CcccccccccccchhhhhHHHHHhhhcccceEEEecCCCcccccchhhhhhhhhhhHHHHHHHhhhccchh
Confidence 665 335899999999975 55556777899999999988653211100 000000 0000
Q ss_pred -----hh-------------c---H-HH------------HH-----hcCcccccCCCCCCEEEEEeCCCCCCCCchHHH
Q 002194 811 -----WE-------------A---T-ST------------YV-----EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS 851 (954)
Q Consensus 811 -----~~-------------~---~-~~------------~~-----~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~ 851 (954)
+. . . .. +. ..+....+.++++|+|+++|++|..++ ++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~--~~~~ 236 (277)
T d1brta_ 159 FYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLP--IENT 236 (277)
T ss_dssp HHHHHHHHHTTHHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEETTCSSSC--GGGT
T ss_pred hhhhccccccccchhhhhhhhHHHhhhhhcccchhhhhhhhhhhhhhhhhHHHHHHhcCccceeEeecCCCCcC--HHHH
Confidence 00 0 0 00 00 001122345678999999999999998 7765
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.+.+... ..+++++++|++||... .++.+.+.+.|.+||++
T Consensus 237 ~~~~~~~---~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fL~k 277 (277)
T d1brta_ 237 ARVFHKA---LPSAEYVEVEGAPHGLL-WTHAEEVNTALLAFLAK 277 (277)
T ss_dssp HHHHHHH---CTTSEEEEETTCCTTHH-HHTHHHHHHHHHHHHHC
T ss_pred HHHHHHh---CCCCEEEEECCCCCchH-HhCHHHHHHHHHHHHCc
Confidence 4444332 22358899999999864 56778888999999864
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.56 E-value=9.4e-15 Score=155.75 Aligned_cols=214 Identities=13% Similarity=0.078 Sum_probs=135.6
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (954)
+.+|.+++..-.-++ ...|+||++||.+.... .| ......|+++||.|++ .+..|
T Consensus 30 ~~~g~~~~y~~~G~~-------~~~p~llllHG~~~~~~-----------~~----~~~~~~l~~~~~~vi~---~Dl~G 84 (310)
T d1b6ga_ 30 GYPGLRAHYLDEGNS-------DAEDVFLCLHGEPTWSY-----------LY----RKMIPVFAESGARVIA---PDFFG 84 (310)
T ss_dssp TCTTCEEEEEEEECT-------TCSCEEEECCCTTCCGG-----------GG----TTTHHHHHHTTCEEEE---ECCTT
T ss_pred CCCCEEEEEEEecCC-------CCCCEEEEECCCCCchH-----------HH----HHHHHHhhccCceEEE---eeecC
Confidence 458999876554332 13689999999753221 11 1235678899999999 67778
Q ss_pred CCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC-
Q 002194 726 EGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP- 800 (954)
Q Consensus 726 ~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~- 800 (954)
+|.+..+. .......+|+.+.++.+ +.+++.|+||||||.+++.+|.++|++++++|++++..-.....
T Consensus 85 ~G~S~~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~~~~~~~~~ 158 (310)
T d1b6ga_ 85 FGKSDKPVDEEDYTFEFHRNFLLALIERL------DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQ 158 (310)
T ss_dssp STTSCEESCGGGCCHHHHHHHHHHHHHHH------TCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTC
T ss_pred ccccccccccccccccccccchhhhhhhc------cccccccccceecccccccchhhhccccceEEEEcCccCCCcccc
Confidence 88886532 13455566666655544 34589999999999999999999999999999987643211000
Q ss_pred -----CCCcc-cc----------------chh---h------hcHHHHHh----------------c-------------
Q 002194 801 -----FGFQN-ED----------------RTL---W------EATSTYVE----------------M------------- 820 (954)
Q Consensus 801 -----~~~~~-~~----------------~~~---~------~~~~~~~~----------------~------------- 820 (954)
+.... .. ... + .....|.. .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (310)
T d1b6ga_ 159 PAFSAFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDIST 238 (310)
T ss_dssp THHHHTTTSSTTTHHHHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHH
T ss_pred hhHHHHhhcchhhhhhhhhhhccchhhhhhhhhhccCccccHHHHHHHHhhcchhhhhhcchhhhhhhhhhhhhhhhhhh
Confidence 00000 00 000 0 00000000 0
Q ss_pred -CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 821 -SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 821 -sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.......++++|+|+++|++|..++ +....++.+.+... .++++++++||.. ..+..+.+.+.|.+||+.
T Consensus 239 ~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~~~~---~~~~~i~~~GH~~-~~e~pe~v~~~i~~Fl~~ 309 (310)
T d1b6ga_ 239 EAISFWQNDWNGQTFMAIGMKDKLLG--PDVMYPMKALINGC---PEPLEIADAGHFV-QEFGEQVAREALKHFAET 309 (310)
T ss_dssp HHHHHHHHTCCSEEEEEEETTCSSSS--HHHHHHHHHHSTTC---CCCEEETTCCSCG-GGGHHHHHHHHHHHHHHT
T ss_pred hhhHHhhcccCCCeEEEEeCCCCCCC--HHHHHHHHHhcCCC---ccEEEECCCcCch-hhhCHHHHHHHHHHHHhC
Confidence 0001124678999999999999988 77777776655433 4667899999976 355666777777788763
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.55 E-value=1.2e-14 Score=155.22 Aligned_cols=121 Identities=14% Similarity=-0.014 Sum_probs=84.0
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (954)
+.-.++..||.+|+...+-.++ .|.||++||++.... .|. ....+++.||.|++
T Consensus 12 ~~~~i~~~dg~~i~y~~~G~~~--------g~pvvllHG~~g~~~-----------~~~-----~~~~~l~~~~~Vi~-- 65 (313)
T d1azwa_ 12 QQGSLKVDDRHTLYFEQCGNPH--------GKPVVMLHGGPGGGC-----------NDK-----MRRFHDPAKYRIVL-- 65 (313)
T ss_dssp EEEEEECSSSCEEEEEEEECTT--------SEEEEEECSTTTTCC-----------CGG-----GGGGSCTTTEEEEE--
T ss_pred CCCEEEeCCCcEEEEEEecCCC--------CCEEEEECCCCCCcc-----------chH-----HHhHHhhcCCEEEE--
Confidence 4455667899999887774321 356778999752211 111 11233468999999
Q ss_pred CCCCCCCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 720 TTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 720 ~~~~~G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
.+.+|+|.+..+. .......+|+.+.++.+ ..+++.|+||||||.+++.++.++|++++++|..++.
T Consensus 66 -~D~rG~G~S~~~~~~~~~~~~~~~~dl~~~~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~ 136 (313)
T d1azwa_ 66 -FDQRGSGRSTPHADLVDNTTWDLVADIERLRTHL------GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF 136 (313)
T ss_dssp -ECCTTSTTSBSTTCCTTCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred -EeccccCCCCccccccchhHHHHHHHHHHHHHhh------ccccceeEEecCCcHHHHHHHHHhhhceeeeeEeccc
Confidence 6667888886432 12445556666665553 3468999999999999999999999999999988764
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.55 E-value=1.8e-14 Score=149.90 Aligned_cols=215 Identities=12% Similarity=0.085 Sum_probs=131.9
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (954)
..+|.+++...+ + + -|.||++||.+.... .+..+. ..... +++||.|++ .+.+|
T Consensus 9 ~~~G~~~~Y~~~---G-----~--G~pvvllHG~~~~~~-----------~~~~~~-~~~~~-l~~~~~vi~---~Dl~G 62 (271)
T d1uk8a_ 9 LAAGVLTNYHDV---G-----E--GQPVILIHGSGPGVS-----------AYANWR-LTIPA-LSKFYRVIA---PDMVG 62 (271)
T ss_dssp EETTEEEEEEEE---C-----C--SSEEEEECCCSTTCC-----------HHHHHT-TTHHH-HTTTSEEEE---ECCTT
T ss_pred EECCEEEEEEEE---e-----e--CCeEEEECCCCCCcc-----------HHHHHH-HHHHH-HhCCCEEEE---EeCCC
Confidence 358988886554 1 2 256788999632111 110001 11222 357999999 66678
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCC----
Q 002194 726 EGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF---- 801 (954)
Q Consensus 726 ~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~---- 801 (954)
+|.+...... ....++....+..+.+. .+.+++.++||||||.+++.++.++|++++++|+.++.........
T Consensus 63 ~G~S~~~~~~-~~~~~~~~~~~~~~~~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~ 139 (271)
T d1uk8a_ 63 FGFTDRPENY-NYSKDSWVDHIIGIMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNA 139 (271)
T ss_dssp STTSCCCTTC-CCCHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHHHHH
T ss_pred CCCccccccc-cccccccchhhhhhhhh--hcCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhhhhh
Confidence 8887543211 11122233333344443 2346899999999999999999999999999998876532111100
Q ss_pred --CCcc----------------cc--chh----hh------cHHHHH-------------hcCcccccCCCCCCEEEEEe
Q 002194 802 --GFQN----------------ED--RTL----WE------ATSTYV-------------EMSPFMSANKLKKPILLVHG 838 (954)
Q Consensus 802 --~~~~----------------~~--~~~----~~------~~~~~~-------------~~sp~~~~~~~~~P~Lii~G 838 (954)
.+.. .. ... +. ..+.+. .......+.++++|+|+++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G 219 (271)
T d1uk8a_ 140 VWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHG 219 (271)
T ss_dssp HHTCCSCHHHHHHHHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEE
T ss_pred hhhccchhHHHHHHHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHHhhccceeEEec
Confidence 0000 00 000 00 000111 11222346788999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
++|..+| +..++.+.+.+. +++++++|++||... .+..+.+.+.|.+||++
T Consensus 220 ~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~Fl~e 270 (271)
T d1uk8a_ 220 REDQVVP--LSSSLRLGELID----RAQLHVFGRCGHWTQ-IEQTDRFNRLVVEFFNE 270 (271)
T ss_dssp TTCSSSC--HHHHHHHHHHCT----TEEEEEESSCCSCHH-HHTHHHHHHHHHHHHHT
T ss_pred CCCCCcC--HHHHHHHHHhCC----CCEEEEECCCCCchH-HHCHHHHHHHHHHHHhc
Confidence 9999998 888877766653 368999999999763 56778888999999975
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.55 E-value=2.8e-14 Score=148.94 Aligned_cols=245 Identities=15% Similarity=0.189 Sum_probs=148.3
Q ss_pred ceEEEEEEcC-CCeEEEEEEEcCCCCCCC---CCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCc
Q 002194 638 QKELIKYQRK-DGVQLSATLYLPPGYDPS---KDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (954)
Q Consensus 638 ~~~~~~~~~~-~g~~l~~~l~~P~~~~~~---~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (954)
+...+++.+. -|.++...+|+|++|... +++++|+|+++||.... .+.|.... .........|+
T Consensus 13 ~~~~~s~~S~~l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~-----------~~~w~~~~-~~~~~~~~~~~ 80 (299)
T d1pv1a_ 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCT-----------PDNASEKA-FWQFQADKYGF 80 (299)
T ss_dssp EEEEEEEECSSSSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCC-----------HHHHHHHS-CHHHHHHHHTC
T ss_pred EEEEEEEECcccCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCC-----------HHHHHHhh-hHHHHHHHcCC
Confidence 4567777765 578999999999998532 34569999999995311 01111111 12334456899
Q ss_pred EEEEcCCCCC-------------CCCCCccc----------chhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEee
Q 002194 714 AILGGPTTPI-------------IGEGDEEA----------NDRFVEQLVACAEAAVEEVVRR----GVAHPSKIAVGGH 766 (954)
Q Consensus 714 ~V~~~~~~~~-------------~G~G~~~~----------~~~~~~~~~~D~~~av~~l~~~----~~~d~~ri~l~G~ 766 (954)
+|+.+..... .|.+.++. ...+....++|+...|+..... ...++++.+|+|+
T Consensus 81 ~vv~~~~~p~~~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~ 160 (299)
T d1pv1a_ 81 AIVFPDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGH 160 (299)
T ss_dssp EEEECCSSCCSTTSCCCTTCCSSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEE
T ss_pred ceecCCCcccccccCCcccccccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEee
Confidence 9998432110 01111111 1123344555555555443321 1133468999999
Q ss_pred ChHHHHHHHHHHh--CCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCC----CCCEEEEEeCC
Q 002194 767 SYGAFMTANLLAH--APHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL----KKPILLVHGEE 840 (954)
Q Consensus 767 S~GG~~a~~~a~~--~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~----~~P~Lii~G~~ 840 (954)
||||+.|+.++.+ +|++|.++++.+|..+.....+..........+....+..+++...+++. ..++++.+|++
T Consensus 161 SmGG~gAl~~al~~~~p~~f~~~~s~s~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~G~~ 240 (299)
T d1pv1a_ 161 SMGGYGAICGYLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDS 240 (299)
T ss_dssp THHHHHHHHHHHHTGGGTCCSEEEEESCCCCSTTSHHHHHHHHHHSCC----CGGGCHHHHGGGSCCCTTCCEEEECCTT
T ss_pred cccHHHHHHHHHHhcCCCceEEEeeccCcCCcccccchhhhhhhhcccchhhhhhcCHHHHHHHhhccCCcceeEecCCC
Confidence 9999999999986 48999999999998765433221111111111122233444554444332 24788889999
Q ss_pred CCCCCCchH-HHHHHHHHHHhCCCc--EEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 841 DNNSGTLTM-QSDRFFNALKGHGAL--CRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 841 D~~v~~~~~-~~~~~~~~l~~~g~~--~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
|...+ .. ..+.+.++++.++.+ +++...||.+|.+.. ....+.+.+.|+.++|+
T Consensus 241 D~~~~--~~~~~~~f~~~~~~~g~~~~~~~~~~~G~~Hsw~y---W~~~i~~~l~f~a~~lg 297 (299)
T d1pv1a_ 241 DPFLE--EHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYYF---VSTFVPEHAEFHARNLG 297 (299)
T ss_dssp CTTTT--TTCCTHHHHHHHTTSTTTTSEEEECCTTCCSSHHH---HHHHHHHHHHHHHHHTT
T ss_pred Ccchh--hhhcHHHHHHHHHhcCCCcceEEEecCCCCcCHHH---HHHHHHHHHHHHHHhcC
Confidence 98764 32 357888999888754 777778887898632 34556677889988875
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.54 E-value=6.8e-14 Score=146.03 Aligned_cols=211 Identities=14% Similarity=0.100 Sum_probs=125.7
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH----CC
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA----RG 712 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~----~G 712 (954)
.+.+.+++++.+| +..+++|+|++|++.+ ++|+|+++||++....... .+..........+.+ ..
T Consensus 25 g~v~~~~~~~~~~-~r~~~vylP~~y~~~k--~yPvl~~lhG~~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 93 (273)
T d1wb4a1 25 GRIVKETYTGING-TKSLNVYLPYGYDPNK--KYNIFYLMHGGGENENTIF--------SNDVKLQNILDHAIMNGELEP 93 (273)
T ss_dssp CEEEEEEEEETTE-EEEEEEEECTTCCTTS--CCEEEEEECCTTCCTTSTT--------STTTCHHHHHHHHHHHTSSCC
T ss_pred CeEEEEEEecCCC-eEEEEEEeCCCCCCCC--CceEEEEEeCCCCCcchhh--------hhccchhHHHHhhhhhhccCC
Confidence 4678899998887 4699999999998655 5999999999753221110 011111112222222 36
Q ss_pred cEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHH---------HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc
Q 002194 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAA---------VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL 783 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~a---------v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~ 783 (954)
+.|+.+++.+..+.+... ......++... +..+..+..+|+++++++|+|+||++|+.++.++|++
T Consensus 94 ~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~ 168 (273)
T d1wb4a1 94 LIVVTPTFNGGNCTAQNF-----YQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDY 168 (273)
T ss_dssp EEEEECCSCSTTCCTTTH-----HHHHHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTT
T ss_pred ceeeccccCCCCCccccc-----hhcccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCc
Confidence 788886665554443331 11222222111 2222333447999999999999999999999999999
Q ss_pred ccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHh---
Q 002194 784 FCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG--- 860 (954)
Q Consensus 784 ~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~--- 860 (954)
|+++++++|.+...... ............. ........++++.+|+.|.. ......+.+.+..
T Consensus 169 f~a~~~~sg~~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~ 234 (273)
T d1wb4a1 169 VAYFMPLSGDYWYGNSP------QDKANSIAEAINR----SGLSKREYFVFAATGSEDIA----YANMNPQIEAMKALPH 234 (273)
T ss_dssp CCEEEEESCCCCBSSSH------HHHHHHHHHHHHH----HTCCTTSCEEEEEEETTCTT----HHHHHHHHHHHHTSTT
T ss_pred ceEEEEeCcccccCCCc------ccccccchhhhhh----hhhcccceEEEEecCCCCcc----cccchhHHHHHHHHHH
Confidence 99999999865322110 0000000011111 11222345577778887754 4444445454432
Q ss_pred -------CCCcEEEEEeCCCCCcC
Q 002194 861 -------HGALCRLVILPFESHGY 877 (954)
Q Consensus 861 -------~g~~~~~~~~~~~~H~~ 877 (954)
.++.+.+..+++++|.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~ggH~w 258 (273)
T d1wb4a1 235 FDYTSDFSKGNFYFLVAPGATHWW 258 (273)
T ss_dssp CCBBSCTTTCCEEEEEETTCCSSH
T ss_pred HHHHHHhcCCCEEEEEECCCccCH
Confidence 35678999999999965
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.53 E-value=2e-13 Score=149.40 Aligned_cols=256 Identities=11% Similarity=0.133 Sum_probs=154.1
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCC-C
Q 002194 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-D 187 (954)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~-~ 187 (954)
.++..++|||||+.||+...+ +.|.||++.. ++...+..+. +
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~---------------------------------~~i~iw~~~~----~~~~~~~~l~gH 50 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNN---------------------------------HEVHIYEKSG----NKWVQVHELKEH 50 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSS---------------------------------SEEEEEEEET----TEEEEEEEEECC
T ss_pred CCeEEEEECCCCCEEEEEeCC---------------------------------CEEEEEECCC----CCEEEEEEecCC
Confidence 367889999999999998765 4789999854 3323332222 2
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
...+....|||||++|+... . ...|.++++++++..+...... .+..+..+.|+|||+.|+...
T Consensus 51 ~~~V~~l~fsp~~~~l~s~s-------~--D~~i~vWd~~~~~~~~~~~~~~--~~~~v~~i~~~p~~~~l~~~s----- 114 (371)
T d1k8kc_ 51 NGQVTGVDWAPDSNRIVTCG-------T--DRNAYVWTLKGRTWKPTLVILR--INRAARCVRWAPNEKKFAVGS----- 114 (371)
T ss_dssp SSCEEEEEEETTTTEEEEEE-------T--TSCEEEEEEETTEEEEEEECCC--CSSCEEEEEECTTSSEEEEEE-----
T ss_pred CCCEEEEEECCCCCEEEEEE-------C--CCeEEEEeeccccccccccccc--ccccccccccccccccceeec-----
Confidence 24689999999999988754 2 3355555666655433321111 111267889999999988761
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc--eeEcCC-C-ccccccccCCC
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGP-P-AVYTSLDPSPD 342 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~--~~~l~~-~-~~~~~~~~SpD 342 (954)
.+ +.-.+|.++. ... ...... . ..+..++|+||
T Consensus 115 ----------------~d--------------------------~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 152 (371)
T d1k8kc_ 115 ----------------GS--------------------------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN 152 (371)
T ss_dssp ----------------TT--------------------------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred ----------------cc--------------------------Ccceeeeeeccccccccccccccccccccccccccc
Confidence 11 2223444444 221 111222 2 56778999999
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEecc-CCCcccCC-----ccccccccCccceeeccCCCCceEE
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD-LPLAEDIP-----IAFNSVRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~-~~~~~~~p-----~~~~~~~~g~~~~~wspDg~~i~~~ 416 (954)
|++|+..+.+ +.+.+|+........... .......+ .........+..++|+|||+.++..
T Consensus 153 ~~~l~s~s~D-------------~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~ 219 (371)
T d1k8kc_ 153 SVLLAAGSCD-------------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219 (371)
T ss_dssp SSEEEEEETT-------------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred ccceeccccC-------------cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccc
Confidence 9999887733 378899876432211110 00000000 0112223345678999999977665
Q ss_pred EEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+..+.|.+|++ ..+.....+..+...+..++|+|||+.|+... ++ ...+|..+...
T Consensus 220 -------------~~d~~i~iwd~--~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~--~~~~~~~~~~~ 275 (371)
T d1k8kc_ 220 -------------SHDSTVCLADA--DKKMAVATLASETLPLLAVTFITESSLVAAGH-DC--FPVLFTYDSAA 275 (371)
T ss_dssp -------------ETTTEEEEEEG--GGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TS--SCEEEEEETTT
T ss_pred -------------ccCCcceEEee--ecccceeeeecccccceeeeecCCCCEEEEEc-CC--ceEEEEeeCCC
Confidence 33557899996 23333344555566678899999998776532 22 25688777655
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.52 E-value=4.5e-14 Score=144.79 Aligned_cols=180 Identities=9% Similarity=-0.064 Sum_probs=116.8
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 779 (954)
..+..|+++||.|++ .|.+|+|.+..+. .......+|+.+.+ .+.. ..+++.++||||||.+++.++.+
T Consensus 20 ~~~~~L~~~g~~Via---~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~~---~~~~--~~~~~~lvGhS~Gg~ia~~~a~~ 91 (256)
T d3c70a1 20 KLKPLLEALGHKVTA---LDLAASGVDPRQIEEIGSFDEYSEPLLTFL---EALP--PGEKVILVGESCGGLNIAIAADK 91 (256)
T ss_dssp THHHHHHHTTCEEEE---ECCTTSTTCSCCGGGCCSHHHHTHHHHHHH---HHSC--TTCCEEEEEETTHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEE---EcCCCCCCCCCCCCCCCCHHHHHHHhhhhh---hhhc--cccceeecccchHHHHHHHHhhc
Confidence 356678899999999 6777888875432 22334444444433 3332 34689999999999999999999
Q ss_pred CCCcccEEEEeccCCCCCCCCCC--------------Ccc------c--------cchhhh----------cH-------
Q 002194 780 APHLFCCGIARSGAYNRTLTPFG--------------FQN------E--------DRTLWE----------AT------- 814 (954)
Q Consensus 780 ~p~~~~a~v~~~~~~~~~~~~~~--------------~~~------~--------~~~~~~----------~~------- 814 (954)
+|++++++|.+++.......... ... . ...... ..
T Consensus 92 ~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (256)
T d3c70a1 92 YCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPEEYELAKML 171 (256)
T ss_dssp HGGGEEEEEEESCCCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHHHHHHHTSTTSCHHHHHHHHHH
T ss_pred CchhhhhhheeccccCCcccchhhHhhhhhhhhhhhhhhHHHhhhccccccchhhhhhhhhhhhhhhhcchhhHHHhhhh
Confidence 99999999998865321110000 000 0 000000 00
Q ss_pred --------HHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHH
Q 002194 815 --------STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886 (954)
Q Consensus 815 --------~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~ 886 (954)
..............+++|+|+++|++|..+| ++..+++.+.+. +.++++++++||... .++.+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~p----~~~~~~i~~agH~~~-~e~P~~~ 244 (256)
T d3c70a1 172 TRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFL--PEFQLWQIENYK----PDKVYKVEGGDHKLQ-LTKTKEI 244 (256)
T ss_dssp CCCBCCCHHHHTTSCCCCTTTGGGSCEEEEECTTCSSSC--HHHHHHHHHHSC----CSEEEECCSCCSCHH-HHSHHHH
T ss_pred hhhhhHHHhhhhhcchhhhhhccccceeEEeecCCCCCC--HHHHHHHHHHCC----CCEEEEECCCCCchH-HhCHHHH
Confidence 0000111122333457899999999999998 877777766543 358899999999863 6677888
Q ss_pred HHHHHHHHHHh
Q 002194 887 LWETDRWLQKY 897 (954)
Q Consensus 887 ~~~i~~fl~~~ 897 (954)
.+.+.+|+++|
T Consensus 245 ~~~l~~~~~~~ 255 (256)
T d3c70a1 245 AEILQEVADTY 255 (256)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 88899988875
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.51 E-value=6.5e-12 Score=136.96 Aligned_cols=311 Identities=10% Similarity=-0.059 Sum_probs=164.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.....++||||+++++.... .. .....+|++|..+ ++. +..++.+
T Consensus 22 p~~~~a~spdg~~~~~~~~~----------------------~~------~~~~~v~v~D~~t----g~~--~~~~~~~- 66 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLPA----------------------HH------SAIIQQWVLDAGS----GSI--LGHVNGG- 66 (373)
T ss_pred CccccccCCCCCEEEEEccc----------------------cc------CCCceEEEEECCC----CCE--EEEEeCC-
Confidence 45677899999999776432 00 0113789998743 332 2223222
Q ss_pred cccceeecCCCCeEEEEEeeccc-cCCCCceEEEEEECCCCceeecccCCCcccc---ccccceeEecCCeEEEEEecCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAE-DSSSSKLRVWVADVDTGKARPLFQSPDIYLN---AIFDNFVWVNNSTLLVCTIPLL 265 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~-~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~---~~~~~~~wspDG~~l~~~~~~~ 265 (954)
....+.|||||++|++....... ........|+++|+.+++.......+..... .....+.|++||+.+++....
T Consensus 67 ~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~- 145 (373)
T d2madh_ 67 FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA- 145 (373)
T ss_pred CCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc-
Confidence 34578999999999997643210 1112345789999999887655443332110 012357899999988766110
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCccccccccCCCCc
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEK 344 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk 344 (954)
....+..++. +++..... .......++|||+
T Consensus 146 ----------------------------------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~g~ 177 (373)
T d2madh_ 146 ----------------------------------------------AGPAVGLVVQGGSSDDQLL--SSPTCYHIHPGAP 177 (373)
T ss_pred ----------------------------------------------CCCceEEeeccCCeEEEEe--ccceeEEEecCCC
Confidence 1112333444 33222111 2234567999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCC--cccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL--AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~--~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~ 422 (954)
.++++... ++.+.+|+..+........... ....+ ......+++++..++..
T Consensus 178 ~~~v~~~~------------dg~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~------ 231 (373)
T d2madh_ 178 STFYLLCA------------QGGLAKTDHAGGAAGAGLVGAMLTAAQNL--------LTQPAQANKSGRIVWPV------ 231 (373)
T ss_pred cEEEEEcC------------CCeEEEEEcCCceeeEEEeeeccccCccc--------eeeeEEECCCceEEEec------
Confidence 88766533 2378889888665433222111 00001 11223344444322111
Q ss_pred CCccccccCCCeEEEEecCCCCCCCce-------------EEeecccccCceeeccCCceEEEEEeccc------cceEE
Q 002194 423 GDAKVEVTPRDIIYTQQAEPVQGEGPE-------------ILHKLDLRYGGISWCDDSLALVYESWYKT------RRTRT 483 (954)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~-------------~l~~~~~~~~~~~~spDg~~l~~~~~~~~------~~~~l 483 (954)
..+.+++++. .+.... ...........+++++|++.+++....+. ....+
T Consensus 232 --------~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v 300 (373)
T d2madh_ 232 --------YSGKILQADI---SAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred --------CCceEEEEEc---CCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeE
Confidence 1122333332 111111 11111223345789999998877643321 12457
Q ss_pred EEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCC
Q 002194 484 WVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (954)
Q Consensus 484 ~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 563 (954)
+++|..++ +....... ...... +.|||||+.++|.... ....|++||+.+|+
T Consensus 301 ~~~d~~t~--~~~~~~~~-~~~~~~------~a~spDG~~~l~vt~~-------------------~d~~v~v~D~~tg~ 352 (373)
T d2madh_ 301 TSVTGLVG--QTSSQISL-GHDVDA------ISVAQDGGPDLYALSA-------------------GTEVLHIYDAGAGD 352 (373)
T ss_pred EEEECCCC--cEEEEecC-CCCeeE------EEECCCCCEEEEEEeC-------------------CCCeEEEEECCCCC
Confidence 88888775 22222211 111122 7899999987765421 12359999999998
Q ss_pred eEEEec
Q 002194 564 KERIWE 569 (954)
Q Consensus 564 ~~~l~~ 569 (954)
..+...
T Consensus 353 ~~~~~~ 358 (373)
T d2madh_ 353 QDQSTV 358 (373)
T ss_pred EEEEEC
Confidence 765544
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=99.51 E-value=1.9e-14 Score=150.34 Aligned_cols=193 Identities=13% Similarity=0.068 Sum_probs=128.9
Q ss_pred CCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEe-ccCCCCCCCCCC-----C--ccccchhhhcHHHHHhcCcccc
Q 002194 754 GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR-SGAYNRTLTPFG-----F--QNEDRTLWEATSTYVEMSPFMS 825 (954)
Q Consensus 754 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~-~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~sp~~~ 825 (954)
..+||+||+|+|+|+||+||+.++..+|+.|++++.+ ++.--....... . ...........+.+...++...
T Consensus 6 y~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~~ca~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 85 (318)
T d2d81a1 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTPTANMKSWSGNQIASV 85 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSCGGGGSTTCCCCCHHHHHHHHHHBTTTBCCG
T ss_pred cCCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCchhhhcccchHHHhhcCCCCCcChhHHHHHHhhcCCcch
Confidence 3589999999999999999999999999999754443 332111111000 0 0011112222233333333333
Q ss_pred cCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC--CcEEEEEeCCCCCcCCCcc-----c-------------HHH
Q 002194 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG--ALCRLVILPFESHGYAARE-----S-------------IMH 885 (954)
Q Consensus 826 ~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~H~~~~~~-----~-------------~~~ 885 (954)
......|+||+||++|.+|| +.++++++++|+..+ .+++++.+++++|.|.... + ..+
T Consensus 86 ~~~~~~pvll~hG~~D~~Vp--p~~s~~l~~~l~~~~~~~~v~yv~~~gagH~fpT~~~g~g~~~c~~~~~pyi~~C~~d 163 (318)
T d2d81a1 86 ANLGQRKIYMWTGSSDTTVG--PNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTSPYISNCNYD 163 (318)
T ss_dssp GGGGGCEEEEEEETTCCSSC--HHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCTTCEEECSSC
T ss_pred hccCCCCEEEEecCCCCCcC--HHHHHHHHHHHHcCcCCCceEEEEeCCCCCCCCCCCCCcccccccccCChhhhcCCCc
Confidence 34456799999999999999 999999999998864 5799999999999872110 0 123
Q ss_pred HHHHHHHHHHHhcccCCC-CCCc---ccccCcccccCCCCCCCCcEEEecCCCCc--CcceeeeeeccCcc
Q 002194 886 VLWETDRWLQKYCVSNTA-DRST---DLKVSKDDESKGAPHLQNKTVAASGGGGT--EADFEHDGCHLAPR 950 (954)
Q Consensus 886 ~~~~i~~fl~~~l~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~ 950 (954)
...+|++||..-+.+... .... +++|..... .....++..++++..|.. ..|..|++||--..
T Consensus 164 ~a~~iL~~~yg~~~~~~~~~~~~~~~~f~q~~~~~--~~~~~~~gy~YvP~~~~~~~~~~~l~v~~Hgc~q 232 (318)
T d2d81a1 164 GAGAALKWIYGSLNARNTGTLSGSVLSFAQSGSYG--ANGMDTTGYLYVPQSCASGATVCSLHVALHGCLQ 232 (318)
T ss_dssp HHHHHHHHHHSSCCCCCCSSCSSEEEEEECCGGGC--CTTBCSEEEEEECHHHHSSSSCEEEEEEECCTTC
T ss_pred HHHHHHHHHhcccCcccCCCCCCcccccCCccccc--CCCCccceEEEeCcccccCCCCCceEEEEecCCC
Confidence 457899999887764322 2222 367765432 245788899999999855 56999999996443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.51 E-value=2.1e-12 Score=135.77 Aligned_cols=268 Identities=14% Similarity=0.074 Sum_probs=166.4
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
+.|.+||+.+ ++. +..++.+.....++|||||++|+.+.. ....|.++|+.+++..........
T Consensus 12 ~~v~v~D~~t----~~~--~~~i~~g~~p~~va~spdG~~l~v~~~--------~~~~i~v~d~~t~~~~~~~~~~~~-- 75 (301)
T d1l0qa2 12 DNISVIDVTS----NKV--TATIPVGSNPMGAVISPDGTKVYVANA--------HSNDVSIIDTATNNVIATVPAGSS-- 75 (301)
T ss_dssp TEEEEEETTT----TEE--EEEEECSSSEEEEEECTTSSEEEEEEG--------GGTEEEEEETTTTEEEEEEECSSS--
T ss_pred CEEEEEECCC----CeE--EEEEECCCCceEEEEeCCCCEEEEEEC--------CCCEEEEEECCCCceeeeeecccc--
Confidence 3689999854 332 222223345677899999999876542 245799999998877554433332
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
...+.|++||+.++++.. ....+..++.
T Consensus 76 ---~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~ 104 (301)
T d1l0qa2 76 ---PQGVAVSPDGKQVYVTNM------------------------------------------------ASSTLSVIDTT 104 (301)
T ss_dssp ---EEEEEECTTSSEEEEEET------------------------------------------------TTTEEEEEETT
T ss_pred ---cccccccccccccccccc------------------------------------------------ccceeeecccc
Confidence 457889999998887611 1234556676
Q ss_pred CCce-eEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTV-KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~-~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
+++. ..+..........|+|||+.+++..... ..+.+++..+.......... ..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~-------------~~ 159 (301)
T d1l0qa2 105 SNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGD------------KTVSVINTVTKAVINTVSVG-------------RS 159 (301)
T ss_dssp TTEEEEEEECSSSEEEEEECTTSSEEEEEETTT------------TEEEEEETTTTEEEEEEECC-------------SS
T ss_pred cceeeeeccccccceEEEeecCCCeeeeeeccc------------cceeeeeccccceeeecccC-------------CC
Confidence 5643 3333335556788999999998877432 26778888765543322211 23
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
+..+.|+||++.++.. . .....+.++.. ...+.............++|+++|+.++....... .
T Consensus 160 ~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~-~ 223 (301)
T d1l0qa2 160 PKGIAVTPDGTKVYVA--N----------FDSMSISVIDT---VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKY-F 223 (301)
T ss_dssp EEEEEECTTSSEEEEE--E----------TTTTEEEEEET---TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSS-C
T ss_pred ceEEEeeccccceeee--c----------ccccccccccc---cceeeeecccccCCcceeeccccccccccccccce-e
Confidence 4568899999976554 1 11234555553 33333333444455667899999999877654332 2
Q ss_pred eEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECC
Q 002194 481 TRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN 560 (954)
Q Consensus 481 ~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 560 (954)
..|+++|+.++ +........ ..... ++|||||++|+.... ....|.+||++
T Consensus 224 ~~v~v~D~~t~--~~~~~~~~~-~~~~~------va~spdg~~l~va~~--------------------~~~~i~v~D~~ 274 (301)
T d1l0qa2 224 NTVSMIDTGTN--KITARIPVG-PDPAG------IAVTPDGKKVYVALS--------------------FCNTVSVIDTA 274 (301)
T ss_dssp CEEEEEETTTT--EEEEEEECC-SSEEE------EEECTTSSEEEEEET--------------------TTTEEEEEETT
T ss_pred eeeeeeecCCC--eEEEEEcCC-CCEEE------EEEeCCCCEEEEEEC--------------------CCCeEEEEECC
Confidence 56899998875 222222211 12222 789999998866541 12359999999
Q ss_pred CCCeEEE
Q 002194 561 TGSKERI 567 (954)
Q Consensus 561 ~g~~~~l 567 (954)
+++....
T Consensus 275 t~~~~~~ 281 (301)
T d1l0qa2 275 TNTITAT 281 (301)
T ss_dssp TTEEEEE
T ss_pred CCeEEEE
Confidence 9875443
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.51 E-value=1.3e-12 Score=145.64 Aligned_cols=169 Identities=11% Similarity=0.060 Sum_probs=103.6
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCC-CC
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD-GA 189 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~-~~ 189 (954)
+..++|||||++|+..+.+ +.+.+|++.+ ++.....++..... ..
T Consensus 64 ~~~v~fSpDG~~l~~~s~d---------------------------------g~v~~~d~~t-~~~~~~~~i~~~~~~~~ 109 (432)
T d1qksa2 64 VHISRLSASGRYLFVIGRD---------------------------------GKVNMIDLWM-KEPTTVAEIKIGSEARS 109 (432)
T ss_dssp EEEEEECTTSCEEEEEETT---------------------------------SEEEEEETTS-SSCCEEEEEECCSEEEE
T ss_pred eeEEEECCCCCEEEEEcCC---------------------------------CCEEEEEeeC-CCceEEEEEecCCCCCC
Confidence 4578999999999877654 4789999864 21111223321111 11
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc-------cccccceeEecCCeEEEEEe
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-------NAIFDNFVWVNNSTLLVCTI 262 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~-------~~~~~~~~wspDG~~l~~~~ 262 (954)
.+..+.|||||++|+.+.. ....|.++|.++++............ ......+.+||||+.++++.
T Consensus 110 ~~~s~~~SpDG~~l~vs~~--------~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~ 181 (432)
T d1qksa2 110 IETSKMEGWEDKYAIAGAY--------WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181 (432)
T ss_dssp EEECCSTTCTTTEEEEEEE--------ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred eEEecccCCCCCEEEEEcC--------CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE
Confidence 4566789999999876543 25678899999988776544332110 00011344556665555441
Q ss_pred cCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce---eEcCCCccccccc
Q 002194 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV---KEIGPPAVYTSLD 338 (954)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~---~~l~~~~~~~~~~ 338 (954)
. ...+++.++. +++. ..+........+.
T Consensus 182 ~------------------------------------------------~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~ 213 (432)
T d1qksa2 182 K------------------------------------------------ETGKILLVDYTDLNNLKTTEISAERFLHDGG 213 (432)
T ss_dssp T------------------------------------------------TTTEEEEEETTCSSEEEEEEEECCSSEEEEE
T ss_pred c------------------------------------------------cCCeEEEEEccCCCcceEEEEcccCccccce
Confidence 0 2346778887 5542 3333335566789
Q ss_pred cCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEe
Q 002194 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL 381 (954)
Q Consensus 339 ~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l 381 (954)
|||||++++..+... ..+.+++.+.++....
T Consensus 214 ~spdg~~~~va~~~~------------~~v~v~d~~~~~~~~~ 244 (432)
T d1qksa2 214 LDGSHRYFITAANAR------------NKLVVIDTKEGKLVAI 244 (432)
T ss_dssp ECTTSCEEEEEEGGG------------TEEEEEETTTTEEEEE
T ss_pred ECCCCCEEEEecccc------------ceEEEeecccceEEEE
Confidence 999999999887543 2788888887665443
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=1.7e-12 Score=142.28 Aligned_cols=280 Identities=14% Similarity=0.080 Sum_probs=162.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeec-----
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQG----- 184 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~----- 184 (954)
.+..++|||||++||..++ +.|.||++.+ +. ....+..
T Consensus 64 ~V~~l~fs~dg~~lasg~d----------------------------------~~i~iW~~~~-~~--~~~~~~~~~~~~ 106 (388)
T d1erja_ 64 VVCCVKFSNDGEYLATGCN----------------------------------KTTQVYRVSD-GS--LVARLSDDSAAN 106 (388)
T ss_dssp CCCEEEECTTSSEEEEECB----------------------------------SCEEEEETTT-CC--EEEEECC-----
T ss_pred cEEEEEECCCCCEEEEEeC----------------------------------CeEEEEEecc-cc--eEeeeccccccc
Confidence 6789999999999987654 3677887743 21 1111110
Q ss_pred -----------CCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEec
Q 002194 185 -----------FPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN 253 (954)
Q Consensus 185 -----------~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp 253 (954)
......+..++|||||+.|+.... ...|.+++...++........... +..+.|++
T Consensus 107 ~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~---------dg~v~i~~~~~~~~~~~~~~h~~~----v~~~~~~~ 173 (388)
T d1erja_ 107 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE---------DRLIRIWDIENRKIVMILQGHEQD----IYSLDYFP 173 (388)
T ss_dssp ------------CCCCBEEEEEECTTSSEEEEEET---------TSCEEEEETTTTEEEEEECCCSSC----EEEEEECT
T ss_pred ccccccccccccCCCCCEEEEEECCCCCcceeccc---------cccccccccccccccccccccccc----cccccccc
Confidence 011225778899999999887552 446777788877665544433322 66889999
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcC-CC
Q 002194 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG-PP 331 (954)
Q Consensus 254 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~-~~ 331 (954)
++..++... ....+..++. +....... ..
T Consensus 174 ~~~~~~~~~-------------------------------------------------~~~~i~~~d~~~~~~~~~~~~~ 204 (388)
T d1erja_ 174 SGDKLVSGS-------------------------------------------------GDRTVRIWDLRTGQCSLTLSIE 204 (388)
T ss_dssp TSSEEEEEE-------------------------------------------------TTSEEEEEETTTTEEEEEEECS
T ss_pred ccccccccc-------------------------------------------------cceeeeeeeccccccccccccc
Confidence 998888661 1233556666 44322222 22
Q ss_pred -ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccC
Q 002194 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (954)
Q Consensus 332 -~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD 409 (954)
.......+++||+.|+..+.+ +.+.+|+...+. ...+...... ..+....+..+.|+||
T Consensus 205 ~~~~~~~~~~~~~~~l~~~~~d-------------~~i~i~~~~~~~~~~~~~~~~~~------~~~h~~~v~~l~~s~~ 265 (388)
T d1erja_ 205 DGVTTVAVSPGDGKYIAAGSLD-------------RAVRVWDSETGFLVERLDSENES------GTGHKDSVYSVVFTRD 265 (388)
T ss_dssp SCEEEEEECSTTCCEEEEEETT-------------SCEEEEETTTCCEEEEEC------------CCCSSCEEEEEECTT
T ss_pred cccccccccCCCCCeEEEEcCC-------------CeEEEeecccCccceeecccccc------ccCCCCCEEEEEECCC
Confidence 222333455688888877633 378999998543 3333221100 1122345678999999
Q ss_pred CCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc------------eEEeecccccCceeeccCCceEEEEEecc
Q 002194 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP------------EILHKLDLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~------------~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
|+.++.. +..+.|.+|++ ..+... .....+...+..++|+|||+.|+..+.++
T Consensus 266 ~~~l~s~-------------~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg 330 (388)
T d1erja_ 266 GQSVVSG-------------SLDRSVKLWNL--QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330 (388)
T ss_dssp SSEEEEE-------------ETTSEEEEEEC-----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred CCEEEEE-------------ECCCcEEEEec--cCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCC
Confidence 9976654 33457778875 111111 11122344567789999999988776443
Q ss_pred ccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 478 TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 478 ~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.|+++|+.++ ++......+...+..........|+|||++|+...
T Consensus 331 ----~i~vwd~~~~--~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s 375 (388)
T d1erja_ 331 ----GVLFWDKKSG--NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375 (388)
T ss_dssp ----EEEEEETTTC--CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred ----EEEEEECCCC--cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence 3666677765 34443443333332211111145899999888765
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.50 E-value=8.1e-12 Score=139.22 Aligned_cols=356 Identities=8% Similarity=-0.002 Sum_probs=177.4
Q ss_pred CCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcc
Q 002194 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (954)
Q Consensus 112 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~ 191 (954)
..+.+++|.+.+.++... .+ +.|.|||+.+ ++. +..++.+..+
T Consensus 22 ~~~~~~~d~~~~~~V~~~---------------------~d----------g~v~vwD~~t----~~~--~~~l~~g~~~ 64 (426)
T d1hzua2 22 KKQLNDLDLPNLFSVTLR---------------------DA----------GQIALVDGDS----KKI--VKVIDTGYAV 64 (426)
T ss_dssp SSCCSCCCGGGEEEEEET---------------------TT----------TEEEEEETTT----CSE--EEEEECCSSE
T ss_pred CcccccCCCCeEEEEEEc---------------------CC----------CEEEEEECCC----CcE--EEEEeCCCCe
Confidence 356788898877776542 11 4799999854 332 2223334467
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCC-ccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD-IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~-~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
..++|||||++|+... . ...|.++|+++++...+..... ......+.++.|||||++|+++..
T Consensus 65 ~~vafSPDGk~l~~~~-------~--d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~------- 128 (426)
T d1hzua2 65 HISRMSASGRYLLVIG-------R--DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY------- 128 (426)
T ss_dssp EEEEECTTSCEEEEEE-------T--TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE-------
T ss_pred eEEEECCCCCEEEEEe-------C--CCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeec-------
Confidence 8899999999987643 2 3478888988876433221110 011112347789999999886611
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCC-C-ccccccc---------
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-P-AVYTSLD--------- 338 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~-~-~~~~~~~--------- 338 (954)
....+.++|. ++....+.. . ..+....
T Consensus 129 -----------------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (426)
T d1hzua2 129 -----------------------------------------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA 167 (426)
T ss_dssp -----------------------------------------ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred -----------------------------------------CCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeE
Confidence 1223555566 544332221 1 2233334
Q ss_pred --cCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002194 339 --PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 339 --~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~ 416 (954)
.|+|++.+++.... ...+.+++........+... ........+.|+|||+.++..
T Consensus 168 i~~s~d~~~~~~~~~~------------~~~i~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~a 224 (426)
T d1hzua2 168 IIASHEHPEFIVNVKE------------TGKVLLVNYKDIDNLTVTSI-----------GAAPFLADGGWDSSHRYFMTA 224 (426)
T ss_dssp EEECSSSSEEEEEETT------------TTEEEEEECSSSSSCEEEEE-----------ECCSSEEEEEECTTSCEEEEE
T ss_pred EEECCCCCEEEEecCC------------CCeEEEEEeccccceeeEEe-----------ccCCccEeeeECCCCcEEEee
Confidence 44444444443321 11333333332111111110 111234568999999865543
Q ss_pred EEeccCCCccccccCCCeEEEEecCCCCCCCceEE-eecc--cccCceeeccCCceEEEEEeccccceEEEEEcCCCCC-
Q 002194 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLD--LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKD- 492 (954)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~--~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~- 492 (954)
. ...+.+.+++. ..++.... .... .......+..++...++.....+. ..+..++.....
T Consensus 225 ~------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~v~~~~~~~~~~ 288 (426)
T d1hzua2 225 A------------NNSNKVAVIDS---KDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGD-GSISLIGTDPKNH 288 (426)
T ss_dssp E------------TTCSEEEEEET---TTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTT-CEEEEEECCTTTC
T ss_pred e------------ecccceeeeec---ccccEEEEeccCCcccccceeeeecCCCCceEEeccCCC-ceEEEeecccccc
Confidence 1 12345666664 33333222 2111 112234444444443333322211 233333333221
Q ss_pred ----CCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeE-EE
Q 002194 493 ----VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE-RI 567 (954)
Q Consensus 493 ----~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l 567 (954)
.+.......+...++. ++|||||++|+...... ........|.+||+++++.. ++
T Consensus 289 ~~~~~~~~~~l~g~~~~v~~------v~~sPdg~~l~v~~~~~--------------~s~~~~~tv~vwd~~t~~~~~~~ 348 (426)
T d1hzua2 289 PQYAWKKVAELQGQGGGSLF------IKTHPKSSHLYVDTTFN--------------PDARISQSVAVFDLKNLDAKYQV 348 (426)
T ss_dssp TTTBTSEEEEEECSSSCCCC------EECCTTCSEEEECCTTC--------------SSHHHHTCEEEEETTCTTSCCEE
T ss_pred ccccceEeEEEecCCCceeE------EEcCCCCceEEEeecCC--------------CCcccCCEEEEEECCCCCcCeEE
Confidence 0112222222233333 88999999998643100 00001235999999988643 33
Q ss_pred eccCcc-cccceeEEeccCCccccccccCCEEEEEEec-CCCCceEEEEECCCCceeEe
Q 002194 568 WESDKE-KYYETTVALMSDQTEGDLYLNQLKILTSKES-KTENTQYYIQSWPDKKSCQI 624 (954)
Q Consensus 568 ~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s-~~~p~~l~~~~~~~g~~~~L 624 (954)
+..... ..-+....+ -.++|||||++++++.+. ......|.++|..+++....
T Consensus 349 ~~~~~~~~~~~~~~rv----~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~ 403 (426)
T d1hzua2 349 LPIAEWADLGEGAKRV----VQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV 403 (426)
T ss_dssp ECHHHHHCCCSSCCCE----EEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEE
T ss_pred eccchhcccCCCCccE----EEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEE
Confidence 221100 000000000 025799999999887764 44567799999988876543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=3.9e-12 Score=135.97 Aligned_cols=287 Identities=12% Similarity=0.056 Sum_probs=151.1
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..|.+|++..++ ..+.+..+..+..+..++|||||++|+.+.. .++...+|.++..+...+........
T Consensus 14 ~~I~v~~~~~~~---~l~~~~~~~~~~~v~~la~spDG~~L~v~~~------~d~~i~~~~i~~~~~~~~~~~~~~~~-- 82 (333)
T d1ri6a_ 14 QQIHVWNLNHEG---ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR------PEFRVLAYRIAPDDGALTFAAESALP-- 82 (333)
T ss_dssp TEEEEEEECTTS---CEEEEEEEECSSCCCCEEECTTSSEEEEEET------TTTEEEEEEECTTTCCEEEEEEEECS--
T ss_pred CcEEEEEEcCCC---CeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC------CCCeEEEEEEeCCCCcEEEeeecccC--
Confidence 478999996433 2233332334456889999999999976542 23445556665555444433221111
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
.....++|+|||++|+++.. ....+..++.
T Consensus 83 -~~p~~l~~spDg~~l~v~~~------------------------------------------------~~~~v~~~~~~ 113 (333)
T d1ri6a_ 83 -GSLTHISTDHQGQFVFVGSY------------------------------------------------NAGNVSVTRLE 113 (333)
T ss_dssp -SCCSEEEECTTSSEEEEEET------------------------------------------------TTTEEEEEEEE
T ss_pred -CCceEEEEcCCCCEEeeccc------------------------------------------------CCCceeeeccc
Confidence 01446899999999987611 1122344444
Q ss_pred CCc---eeEc-CCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCcccccc
Q 002194 322 DGT---VKEI-GPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV 397 (954)
Q Consensus 322 ~G~---~~~l-~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~ 397 (954)
++. .... ........+.+||||++++....... .+.+|+................. ..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~------------~i~~~~~~~~~~~~~~~~~~~~~------~~ 175 (333)
T d1ri6a_ 114 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQD------------RICLFTVSDDGHLVAQDPAEVTT------VE 175 (333)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGT------------EEEEEEECTTSCEEEEEEEEEEC------ST
T ss_pred cccceecccccCCCccceEEEeeecceeeeccccccc------------eeeEEEeccCCcceeeeceeeee------ec
Confidence 222 1122 22255678899999999888774432 67777776422111100000000 01
Q ss_pred ccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE---ee------cccccCceeeccCCc
Q 002194 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL---HK------LDLRYGGISWCDDSL 468 (954)
Q Consensus 398 ~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l---~~------~~~~~~~~~~spDg~ 468 (954)
...++.++|+++++.++.. ... .+...++..+ ......... .. .......+++++||+
T Consensus 176 g~~p~~i~~~~~~~~~~~~-~~~-----------~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 242 (333)
T d1ri6a_ 176 GAGPRHMVFHPNEQYAYCV-NEL-----------NSSVDVWELK-DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 242 (333)
T ss_dssp TCCEEEEEECTTSSEEEEE-ETT-----------TTEEEEEESS-CTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred CCCccEEEEeccceeEEee-ccc-----------cCceEEEeec-ccccceeeeeeeeeeecCCCccccceeEEEecccC
Confidence 1234578999999854433 111 1223333320 122222111 11 111223468999999
Q ss_pred eEEEEEeccccceEEEEEcCCCCCCCcEEE-ecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCC
Q 002194 469 ALVYESWYKTRRTRTWVISPGSKDVAPRIL-FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATP 547 (954)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~ 547 (954)
+++......+ ...+|.++.+++. .... .........+ ++|||||++|+....
T Consensus 243 ~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~p~~------~a~spDGk~l~va~~------------------ 295 (333)
T d1ri6a_ 243 HLYACDRTAS-LITVFSVSEDGSV--LSKEGFQPTETQPRG------FNVDHSGKYLIAAGQ------------------ 295 (333)
T ss_dssp EEEEEETTTT-EEEEEEECTTSCC--EEEEEEEECSSSCCC------EEECTTSSEEEEECT------------------
T ss_pred ceeeecccCC-eEEEEEEcCCCCE--EEEEEEeCCCCCeeE------EEEeCCCCEEEEEEC------------------
Confidence 8877654433 3678888776642 1221 1111111122 889999999876531
Q ss_pred CCCCCeEEEEECCCCCeEEE
Q 002194 548 EGNIPFLDLFDINTGSKERI 567 (954)
Q Consensus 548 ~~~~~~l~~~d~~~g~~~~l 567 (954)
..+.-.+|.+|.++|+.+++
T Consensus 296 ~~~~v~v~~id~~tG~l~~~ 315 (333)
T d1ri6a_ 296 KSHHISVYEIVGEQGLLHEK 315 (333)
T ss_dssp TTCEEEEEEEETTTTEEEEE
T ss_pred CCCeEEEEEEECCCCcEEEE
Confidence 11223466678888887665
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.49 E-value=2.8e-12 Score=137.71 Aligned_cols=304 Identities=10% Similarity=-0.018 Sum_probs=171.5
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002194 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (954)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~ 192 (954)
.|+||++|+++++...+ +.|.+||+.+ ++......++.+....
T Consensus 1 g~a~~~~~~~l~~~~~~---------------------------------~~v~v~D~~t----~~~~~t~~~~~~~~p~ 43 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTNYP---------------------------------NNLHVVDVAS----DTVYKSCVMPDKFGPG 43 (346)
T ss_dssp CCCCCTTCEEEEEEETT---------------------------------TEEEEEETTT----TEEEEEEECSSCCSSC
T ss_pred CccCCCCCcEEEEEcCC---------------------------------CEEEEEECCC----CCEEEEEEcCCCCCcc
Confidence 47899999999998875 5899999964 3322211233344577
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCc--cccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI--YLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~--~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
.++|||||++|+.+.. ....|+++|+++++.......... ........++|+|||+.++++.......
T Consensus 44 ~l~~spDG~~l~v~~~--------~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~-- 113 (346)
T d1jmxb_ 44 TAMMAPDNRTAYVLNN--------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL-- 113 (346)
T ss_dssp EEEECTTSSEEEEEET--------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEEC--
T ss_pred eEEECCCCCEEEEEEC--------CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcce--
Confidence 8999999998876532 246899999998876543322221 1111244788999999998772110000
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEc----CCCccccccccCCCCcE
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI----GPPAVYTSLDPSPDEKY 345 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l----~~~~~~~~~~~SpDGk~ 345 (954)
.. ........+..++. +++.... ..+.......+++||+.
T Consensus 114 -----------------------------~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (346)
T d1jmxb_ 114 -----------------------------ND------HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL 158 (346)
T ss_dssp -----------------------------SS------CEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCE
T ss_pred -----------------------------ee------eeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEE
Confidence 00 00002344666776 5542221 12234455667888876
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEE------
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE------ 418 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~------ 418 (954)
++... ++.+|++...+. +.+... ...+...|+|++..++....
T Consensus 159 ~~~~~----------------~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (346)
T d1jmxb_ 159 YVAGP----------------DIYKMDVKTGKYTVALPLR--------------NWNRKGYSAPDVLYFWPHQSPRHEFS 208 (346)
T ss_dssp EEESS----------------SEEEECTTTCCEEEEECST--------------TCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred EEeCC----------------cceEEEccCCCEEEEEecC--------------CCccceEEeccccEEEEEecCCCceE
Confidence 55432 567788775443 333221 12245567777765432200
Q ss_pred ------e-ccCCCccccccCCCeEEEEecCCCCCCCceE--EeecccccCceeeccCCceEEEEEeccccceEEEEEcCC
Q 002194 419 ------T-QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI--LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (954)
Q Consensus 419 ------~-~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~--l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~ 489 (954)
. ...............+.+++. ..+.... +......+....+++++..+++... ..+.++|..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~v~d~~ 280 (346)
T d1jmxb_ 209 MLYTIARFKDDKQDPATADLLYGYLSVDL---KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-----NRLAKYDLK 280 (346)
T ss_dssp EEEEEEEC-------CCCEEEEEEEEEET---TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-----SEEEEEETT
T ss_pred eeeeeeeeccCceeEeeccCCceEEEEEC---CCCceEEEEeecccceeEEEEEeCCCCEEEEecC-----CeEEEEECC
Confidence 0 000000011122335677775 3343322 2344445566888999999887643 247778887
Q ss_pred CCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEE
Q 002194 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566 (954)
Q Consensus 490 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 566 (954)
++ +........ ..+.. ++|||||++|+.... ...|.+||+++++...
T Consensus 281 ~~--~~~~~~~~~-~~~~~------va~s~DG~~l~v~~~---------------------d~~v~v~D~~t~~~i~ 327 (346)
T d1jmxb_ 281 QR--KLIKAANLD-HTYYC------VAFDKKGDKLYLGGT---------------------FNDLAVFNPDTLEKVK 327 (346)
T ss_dssp TT--EEEEEEECS-SCCCE------EEECSSSSCEEEESB---------------------SSEEEEEETTTTEEEE
T ss_pred CC--cEEEEEcCC-CCEEE------EEEcCCCCEEEEEeC---------------------CCcEEEEECccCCEEE
Confidence 75 222222211 11222 899999999886641 1249999999887653
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.49 E-value=2.9e-13 Score=141.08 Aligned_cols=196 Identities=15% Similarity=0.117 Sum_probs=120.6
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAAV 747 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av 747 (954)
-|.||++||.+.... .| ...+..++++||.|++ .+.+|+|.+... ........+|+.+.+
T Consensus 23 g~~illlHG~~~~~~-----------~~----~~~~~~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~di~~~i 84 (279)
T d1hkha_ 23 GQPVVLIHGYPLDGH-----------SW----ERQTRELLAQGYRVIT---YDRRGFGGSSKVNTGYDYDTFAADLHTVL 84 (279)
T ss_dssp SEEEEEECCTTCCGG-----------GG----HHHHHHHHHTTEEEEE---ECCTTSTTSCCCSSCCSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHH-----------HH----HHHHHHHHHCCCEEEE---EechhhCCccccccccchhhhhhhhhhhh
Confidence 467889999642211 11 2345567899999999 667788887543 223455677777776
Q ss_pred HHHHHcCCCCCCcEEEEeeChHH-HHHHHHHHhCCCcccEEEEeccCCCCCCC--C--CCCcccc-----------ch--
Q 002194 748 EEVVRRGVAHPSKIAVGGHSYGA-FMTANLLAHAPHLFCCGIARSGAYNRTLT--P--FGFQNED-----------RT-- 809 (954)
Q Consensus 748 ~~l~~~~~~d~~ri~l~G~S~GG-~~a~~~a~~~p~~~~a~v~~~~~~~~~~~--~--~~~~~~~-----------~~-- 809 (954)
+.+ +.+++.++|||||| .++..++.++|++++++|++++....... . ....... ..
T Consensus 85 ~~l------~~~~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
T d1hkha_ 85 ETL------DLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAW 158 (279)
T ss_dssp HHH------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHH
T ss_pred hhc------CcCccccccccccccchhhhhccccccccceeEEeeccCCccccchhhhhhhhHHHHHHHHHhhhhhhhhh
Confidence 665 34589999999996 55556677789999999998764321110 0 0000000 00
Q ss_pred ---hhhc-------------H-------HHHHhcC-----------------cccccCCCCCCEEEEEeCCCCCCCCchH
Q 002194 810 ---LWEA-------------T-------STYVEMS-----------------PFMSANKLKKPILLVHGEEDNNSGTLTM 849 (954)
Q Consensus 810 ---~~~~-------------~-------~~~~~~s-----------------p~~~~~~~~~P~Lii~G~~D~~v~~~~~ 849 (954)
.+.. . ....... .+..+.++++|+|+++|++|..++ .+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~ 236 (279)
T d1hkha_ 159 FTDFYKNFYNLDENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILP--ID 236 (279)
T ss_dssp HHHHHHHHHTHHHHBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSC--TT
T ss_pred hhhhhhhhcccchhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhcccccchhhhcccCCceEEEEcCCCCccC--HH
Confidence 0000 0 0000000 011234457999999999999987 65
Q ss_pred H-HHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 850 Q-SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 850 ~-~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
. .+.+.+.+. +++++++|++||... .+..+++.+.|.+||++
T Consensus 237 ~~~~~~~~~~p----~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~k 279 (279)
T d1hkha_ 237 ATARRFHQAVP----EADYVEVEGAPHGLL-WTHADEVNAALKTFLAK 279 (279)
T ss_dssp TTHHHHHHHCT----TSEEEEETTCCTTHH-HHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHHCc
Confidence 4 344444332 358889999999764 56677888889999864
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.49 E-value=6.6e-14 Score=147.14 Aligned_cols=210 Identities=15% Similarity=0.116 Sum_probs=133.0
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+|+...+-|++ .|+||++||++.... .|. ..+..| ++||.|++ .+.+|+
T Consensus 14 ~~g~~i~y~~~G~~~--------~p~lvllHG~~~~~~-----------~~~----~~~~~L-~~~~~vi~---~d~~G~ 66 (291)
T d1bn7a_ 14 VLGERMHYVDVGPRD--------GTPVLFLHGNPTSSY-----------LWR----NIIPHV-APSHRCIA---PDLIGM 66 (291)
T ss_dssp ETTEEEEEEEESCSS--------SSCEEEECCTTCCGG-----------GGT----TTHHHH-TTTSCEEE---ECCTTS
T ss_pred ECCEEEEEEEeCCCC--------CCeEEEECCCCCCHH-----------HHH----HHHHHH-hcCCEEEE---EeCCCC
Confidence 489999877764432 366888999642211 121 123344 56999999 666788
Q ss_pred CCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC-CC-
Q 002194 727 GDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-FG- 802 (954)
Q Consensus 727 G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-~~- 802 (954)
|.+..+ ........+|+.+.++.+ +.+++.++||||||.+++.++.++|++++++|++++........ +.
T Consensus 67 G~S~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~~~~~~~~~~~~ 140 (291)
T d1bn7a_ 67 GKSDKPDLDYFFDDHVRYLDAFIEAL------GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPE 140 (291)
T ss_dssp TTSCCCSCCCCHHHHHHHHHHHHHHT------TCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEECCCBCSGGGSCH
T ss_pred ccccccccccchhHHHHHHhhhhhhh------ccccccccccccccchhHHHHHhCCcceeeeeeeccccCCccchhhhh
Confidence 877543 222445566666655543 34689999999999999999999999999999876543211000 00
Q ss_pred --------C--cc-------ccc--------------hhhhcHHHHH-----------------hcC-------------
Q 002194 803 --------F--QN-------EDR--------------TLWEATSTYV-----------------EMS------------- 821 (954)
Q Consensus 803 --------~--~~-------~~~--------------~~~~~~~~~~-----------------~~s------------- 821 (954)
+ .. ... ........+. ...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T d1bn7a_ 141 FARETFQAFRTADVGRELIIDQNAFIEGVLPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNEIPIAGEPANIVALVE 220 (291)
T ss_dssp HHHHHHHHHTSTTHHHHHHTTSCHHHHTHHHHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHH
T ss_pred hhhhHHHHHhhhhhHHHhhhhhhhhHHhhhhhhccccchHHHHHHHHHHhcchhhhHHHHHHHHHhhhhhhhchhhhhhh
Confidence 0 00 000 0000000000 000
Q ss_pred -cccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 822 -PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 822 -p~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
......++++|+|+++|++|..+| ...+.++.+.+. ++++++++++||... .+..+.+.+.+.+||+.
T Consensus 221 ~~~~~~~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fL~~ 289 (291)
T d1bn7a_ 221 AYMNWLHQSPVPKLLFWGTPGVLIP--PAEAARLAESLP----NCKTVDIGPGLHYLQ-EDNPDLIGSEIARWLPG 289 (291)
T ss_dssp HHHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHHHST----TEEEEEEEEESSCGG-GTCHHHHHHHHHHHSGG
T ss_pred hhhhhhhcCCCCEEEEEeCCCCCcC--HHHHHHHHHHCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHHHh
Confidence 011235678999999999999998 888888777663 368899999999763 56677788888888753
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.48 E-value=4.6e-13 Score=138.78 Aligned_cols=217 Identities=13% Similarity=0.131 Sum_probs=136.5
Q ss_pred ceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 638 QKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 638 ~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
++|.+++++. .|..|+..++.|. .|+|+++||.... .+. ..|.... ...+..+.++++||
T Consensus 3 ~~e~~~v~s~~~~r~~~~~v~~~~---------~pvlylLhG~~g~-~~~--------~~w~~~~-~~~~~~~~~~~iVV 63 (267)
T d1r88a_ 3 PYENLMVPSPSMGRDIPVAFLAGG---------PHAVYLLDAFNAG-PDV--------SNWVTAG-NAMNTLAGKGISVV 63 (267)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCS---------SSEEEEECCSSCC-SSS--------CHHHHTS-CHHHHHTTSSSEEE
T ss_pred ceEEEEEecccCCceeeEEEECCC---------CCEEEEcCCCCCC-CCc--------chhhhcc-HHHHHHhhCCeEEE
Confidence 4688888876 5778998887542 5999999994210 000 0111111 23456677999999
Q ss_pred EcCCCCCCCCCCcc-c--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 717 GGPTTPIIGEGDEE-A--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 717 ~~~~~~~~G~G~~~-~--~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
.++.- ..++.... . ...+.....+|+ +.+|.++..+|++|++|+|+||||++|+.++.++|++|+++++++|.
T Consensus 64 ~p~g~-~~~~y~~~~~~~~~~~~tfl~~eL---~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~ 139 (267)
T d1r88a_ 64 APAGG-AYSMYTNWEQDGSKQWDTFLSAEL---PDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGF 139 (267)
T ss_dssp EECCC-TTSTTSBCSSCTTCBHHHHHHTHH---HHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCC
T ss_pred EECCC-CCcCCccccccccccHHHHHHHHH---HHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCc
Confidence 97652 21221211 1 223444555554 45676777789999999999999999999999999999999999998
Q ss_pred CCCCCCCCC------C----ccccchhhh--cHHHHHhcCcccccCCC---CCCEEEEEeCCCCCCCCc---------hH
Q 002194 794 YNRTLTPFG------F----QNEDRTLWE--ATSTYVEMSPFMSANKL---KKPILLVHGEEDNNSGTL---------TM 849 (954)
Q Consensus 794 ~~~~~~~~~------~----~~~~~~~~~--~~~~~~~~sp~~~~~~~---~~P~Lii~G~~D~~v~~~---------~~ 849 (954)
++....... . .......|. ....+.+.+|...++++ ..++++.+|++|..+... ..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~ 219 (267)
T d1r88a_ 140 LYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMG 219 (267)
T ss_dssp CCTTSHHHHHHHHHHHHHHHCCCTHHHHCCGGGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHH
T ss_pred cCCCCccchhhhhhHHhhhcCCcHhhccCCcchHhHHhcCHHHHHHhccccCceEEEEecCCCcccccchhhhhHHHhhh
Confidence 764321000 0 000001111 12234455676555443 467899999998765300 12
Q ss_pred HHHHHHHHHHhCC-CcEEEEEeCCCCCcC
Q 002194 850 QSDRFFNALKGHG-ALCRLVILPFESHGY 877 (954)
Q Consensus 850 ~~~~~~~~l~~~g-~~~~~~~~~~~~H~~ 877 (954)
...++.++|+..+ .++.+.+.++.+|.+
T Consensus 220 ~~~~~~~~l~~~~g~~~~~~~~~~G~H~W 248 (267)
T d1r88a_ 220 NSRMFYNQYRSVGGHNGHFDFPASGDNGW 248 (267)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCSSCCSSH
T ss_pred hHHHHHHHHHHcCCCcEEEEEcCCCeECh
Confidence 4556777887764 678888888889976
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.47 E-value=4.9e-12 Score=136.74 Aligned_cols=279 Identities=11% Similarity=-0.005 Sum_probs=153.4
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccc-cCCCCceEEEEEECCCCceeecccCCCc-
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAE-DSSSSKLRVWVADVDTGKARPLFQSPDI- 240 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~-~~~~~~~~l~~~d~~~g~~~~lt~~~~~- 240 (954)
..+|+||..+ ++. +..++. .....++|||||++|+++...... ..+.....|+++|+.+++.......+..
T Consensus 28 ~~v~v~D~~t----g~~--~~~~~~-g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~ 100 (355)
T d2bbkh_ 28 TQQFVIDGEA----GRV--IGMIDG-GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 100 (355)
T ss_dssp EEEEEEETTT----TEE--EEEEEE-CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CeEEEEECCC----CcE--EEEEEC-CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcc
Confidence 4799999853 332 221222 234578999999999987643210 1112245799999999887554322211
Q ss_pred --cccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEE
Q 002194 241 --YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (954)
Q Consensus 241 --~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~ 318 (954)
........++|+|||+.+++.... ....++.
T Consensus 101 ~~~~~~~~~~~~~s~dg~~~~v~~~~-----------------------------------------------~~~~~~~ 133 (355)
T d2bbkh_ 101 RFLVGTYPWMTSLTPDGKTLLFYQFS-----------------------------------------------PAPAVGV 133 (355)
T ss_dssp CCCBSCCGGGEEECTTSSEEEEEECS-----------------------------------------------SSCEEEE
T ss_pred eeecCCCCceEEEecCCCeeEEecCC-----------------------------------------------CCceeee
Confidence 111113467899999999876110 1122444
Q ss_pred EEe-CCcee-EcCCC--------ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcc
Q 002194 319 VSL-DGTVK-EIGPP--------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE 388 (954)
Q Consensus 319 ~~~-~G~~~-~l~~~--------~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~ 388 (954)
++. +++.. .+... .....+.+++||+.+++...... .+.+.+...... ..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~------------~~~~~~~~~~~~--------~~ 193 (355)
T d2bbkh_ 134 VDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG------------TPEITHTEVFHP--------ED 193 (355)
T ss_dssp EETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSS------------CCEEEECCCCSC--------TT
T ss_pred eecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCC------------eEEEEecccccc--------ee
Confidence 454 44321 12111 22334678999998877653321 233333321110 00
Q ss_pred cCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-------------c
Q 002194 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-------------D 455 (954)
Q Consensus 389 ~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-------------~ 455 (954)
........+++++..+++. +..+.++++++ .++....+... .
T Consensus 194 ---------~~~~~~~~~~~~~~~~~~~-------------~~~~~~~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~p 248 (355)
T d2bbkh_ 194 ---------EFLINHPAYSQKAGRLVWP-------------TYTGKIHQIDL---SSGDAKFLPAVEALTEAERADGWRP 248 (355)
T ss_dssp ---------SCBCSCCEEETTTTEEEEE-------------BTTSEEEEEEC---TTSSCEECCCEESSCHHHHHTTEEE
T ss_pred ---------cceeeeccccCCCCeEEEe-------------cCCCeEEEEec---CCCcEEEEeccCCcccceEeeeeec
Confidence 0111235677777766665 34557888875 44544433211 1
Q ss_pred cccCceeeccCCceEEEEEeccc------cceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEe
Q 002194 456 LRYGGISWCDDSLALVYESWYKT------RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 456 ~~~~~~~~spDg~~l~~~~~~~~------~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (954)
.....+++++|++.++....... ....|+++|+.++. ....+... ..... ++|||||+.++|...
T Consensus 249 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~-~~~~~~~~--~~~~~------~a~spDG~~~l~v~~ 319 (355)
T d2bbkh_ 249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE-RLAKFEMG--HEIDS------INVSQDEKPLLYALS 319 (355)
T ss_dssp CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC-EEEEEEEE--EEECE------EEECCSSSCEEEEEE
T ss_pred cceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc-EEEEecCC--CCEEE------EEEcCCCCeEEEEEE
Confidence 12345889999999887654322 23578999988862 11122111 11122 789999997666552
Q ss_pred eccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEe
Q 002194 530 KENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (954)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 568 (954)
. ....|++||+++|+..+-.
T Consensus 320 ~-------------------~d~~i~v~D~~tg~~~~~i 339 (355)
T d2bbkh_ 320 T-------------------GDKTLYIHDAESGEELRSV 339 (355)
T ss_dssp T-------------------TTTEEEEEETTTCCEEEEE
T ss_pred C-------------------CCCEEEEEECCCCCEEEEE
Confidence 1 1235999999999865443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.47 E-value=3.7e-12 Score=134.19 Aligned_cols=239 Identities=11% Similarity=0.098 Sum_probs=143.9
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+...+|||||+.|+... . ...|.++|+++++..+...... ...+..+.|+|||++++..
T Consensus 13 ~~V~~l~~s~dg~~l~s~s-------~--Dg~v~vWd~~~~~~~~~~~~~h---~~~v~~v~~~~~g~~~~~~------- 73 (299)
T d1nr0a2 13 KAITALSSSADGKTLFSAD-------A--EGHINSWDISTGISNRVFPDVH---ATMITGIKTTSKGDLFTVS------- 73 (299)
T ss_dssp SCEEEEEECTTSSEEEEEE-------T--TSCEEEEETTTCCEEECSSCSC---SSCEEEEEECTTSCEEEEE-------
T ss_pred CCcEEEEECCCCCEEEEEc-------C--CCeEEEEECCCCcEEEEEcCCC---CCcEEEEEeeccceeeccc-------
Confidence 4688999999999988754 2 3467777988887765543221 1126789999999876654
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee---EcC--CCccccccccCCC
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK---EIG--PPAVYTSLDPSPD 342 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~---~l~--~~~~~~~~~~SpD 342 (954)
....+..++. ..... .+. .......+.|+||
T Consensus 74 -------------------------------------------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 110 (299)
T d1nr0a2 74 -------------------------------------------WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 110 (299)
T ss_dssp -------------------------------------------TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTT
T ss_pred -------------------------------------------ceeeEEEeccCCccccccccccccccccccccccccc
Confidence 1123444554 21111 111 1134556789999
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~ 422 (954)
|+.++.... ..+.+|+... ...+... .....++|+||++.++..
T Consensus 111 g~~~~~~~~--------------~~i~~~~~~~--~~~~~~~--------------~~~~~~~~s~~~~~l~~g------ 154 (299)
T d1nr0a2 111 GDIAVAACY--------------KHIAIYSHGK--LTEVPIS--------------YNSSCVALSNDKQFVAVG------ 154 (299)
T ss_dssp SSCEEEEES--------------SEEEEEETTE--EEEEECS--------------SCEEEEEECTTSCEEEEE------
T ss_pred ccccccccc--------------cccccccccc--ccccccc--------------cccccccccccccccccc------
Confidence 998877662 2677887432 2221110 122458899999876655
Q ss_pred CCccccccCCCeEEEEecCCCCCCCceEE--eecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE--
Q 002194 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL-- 498 (954)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l-- 498 (954)
...+.+.+|++ .+++...+ ..+...+..++|+|+++.|+.....+ .+++++..++. ....+
T Consensus 155 -------~~dg~i~~~d~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~~~~~~~~~-~~~~~~~ 219 (299)
T d1nr0a2 155 -------GQDSKVHVYKL---SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR----KVIPYSVANNF-ELAHTNS 219 (299)
T ss_dssp -------ETTSEEEEEEE---ETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS----CEEEEEGGGTT-EESCCCC
T ss_pred -------ccccccccccc---cccccccccccccccccccccccccccccccccccc----ccccccccccc-ccccccc
Confidence 33567888886 44444333 34456678899999999988765443 25555554431 10000
Q ss_pred ecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEE
Q 002194 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (954)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 567 (954)
...+...+.. ++|+|+|++++.... ...|++||++++....+
T Consensus 220 ~~~h~~~v~~------l~~s~~~~~l~sgs~---------------------dg~i~iwd~~~~~~~~~ 261 (299)
T d1nr0a2 220 WTFHTAKVAC------VSWSPDNVRLATGSL---------------------DNSVIVWNMNKPSDHPI 261 (299)
T ss_dssp CCCCSSCEEE------EEECTTSSEEEEEET---------------------TSCEEEEETTCTTSCCE
T ss_pred cccccccccc------ccccccccceEEEcC---------------------CCEEEEEECCCCCcceE
Confidence 1111122222 789999999887762 12499999987765443
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.46 E-value=9.8e-13 Score=138.89 Aligned_cols=215 Identities=16% Similarity=0.057 Sum_probs=131.4
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (954)
+.-.++..||.+|+...+-+++ .|.||++||++.... .|. ....++++||.|++
T Consensus 12 ~~~~v~~~dG~~i~y~~~G~~~--------g~pvvllHG~~~~~~-----------~w~-----~~~~~l~~~~~vi~-- 65 (313)
T d1wm1a_ 12 DSGWLDTGDGHRIYWELSGNPN--------GKPAVFIHGGPGGGI-----------SPH-----HRQLFDPERYKVLL-- 65 (313)
T ss_dssp EEEEEECSSSCEEEEEEEECTT--------SEEEEEECCTTTCCC-----------CGG-----GGGGSCTTTEEEEE--
T ss_pred cCCEEEeCCCcEEEEEEecCCC--------CCeEEEECCCCCccc-----------chH-----HHHHHhhcCCEEEE--
Confidence 3444667799999988775432 356788999753221 121 11123567999999
Q ss_pred CCCCCCCCCcccchh----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 720 TTPIIGEGDEEANDR----FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 720 ~~~~~G~G~~~~~~~----~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
.|.+|+|.+..... ......+|+...++. .+..++.++|||+||.++..++...|++++..+..++...
T Consensus 66 -~D~rG~G~S~~~~~~~~~~~~~~~~d~~~~~~~------~~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~~~ 138 (313)
T d1wm1a_ 66 -FDQRGCGRSRPHASLDNNTTWHLVADIERLREM------AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTL 138 (313)
T ss_dssp -ECCTTSTTCBSTTCCTTCSHHHHHHHHHHHHHH------TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCC
T ss_pred -EeCCCcccccccccccccchhhHHHHHHhhhhc------cCCCcceeEeeecCCchhhHHHHHHhhhheeeeecccccc
Confidence 66678888754321 123344444444333 2446899999999999999999999999999998875432
Q ss_pred CCC------------------------CCCCCccc------------cchhhh--------------------------c
Q 002194 796 RTL------------------------TPFGFQNE------------DRTLWE--------------------------A 813 (954)
Q Consensus 796 ~~~------------------------~~~~~~~~------------~~~~~~--------------------------~ 813 (954)
... ........ ....+. .
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (313)
T d1wm1a_ 139 RKQRLHWYYQDGASRFFPEKWERVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGE 218 (313)
T ss_dssp CHHHHHHHHTSSGGGTSHHHHHHHHTTSCTTGGGCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTTSSSSCCGGGGGGGC
T ss_pred cccccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhh
Confidence 100 00000000 000000 0
Q ss_pred HH----------HHHhcC---------cccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 002194 814 TS----------TYVEMS---------PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874 (954)
Q Consensus 814 ~~----------~~~~~s---------p~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 874 (954)
.. ...... .......+++|+|+++|++|.++| +..++++.+.+.. +++++++++|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~G~~D~~~p--~~~~~~l~~~~p~----a~~~~i~~aG 292 (313)
T d1wm1a_ 219 DDFALAFARIENHYFTHLGFLESDDQLLRNVPLIRHIPAVIVHGRYDMACQ--VQNAWDLAKAWPE----AELHIVEGAG 292 (313)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCSSTTHHHHTGGGGTTSCEEEEEETTCSSSC--HHHHHHHHHHCTT----SEEEEETTCC
T ss_pred hhHHhhhhhhhhhhhhhhcccccchhhhhhhhhhCCCCEEEEEECCCCccC--HHHHHHHHHHCCC----CEEEEECCCC
Confidence 00 000000 011223467899999999999998 8988888887753 4889999999
Q ss_pred CcCCCcccHHHHHHHHHHHHHHh
Q 002194 875 HGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 875 H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
|.... .+...++++.++++
T Consensus 293 H~~~e----P~~~~~lv~a~~~f 311 (313)
T d1wm1a_ 293 HSYDE----PGILHQLMIATDRF 311 (313)
T ss_dssp SSTTS----HHHHHHHHHHHHHH
T ss_pred CCcCC----chHHHHHHHHHHHh
Confidence 97532 34456677777765
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=4.3e-12 Score=133.72 Aligned_cols=279 Identities=15% Similarity=0.138 Sum_probs=169.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++||..+.+ +.|.||++.+ + .....+.. +..
T Consensus 19 ~I~~l~~sp~~~~l~s~s~D---------------------------------g~i~iWd~~~-~--~~~~~~~~--h~~ 60 (317)
T d1vyhc1 19 PVTRVIFHPVFSVMVSASED---------------------------------ATIKVWDYET-G--DFERTLKG--HTD 60 (317)
T ss_dssp CEEEEEECSSSSEEEEEESS---------------------------------SCEEEEETTT-C--CCCEEECC--CSS
T ss_pred CeEEEEEcCCCCEEEEEeCC---------------------------------CeEEEEECCC-C--CEEEEEeC--CCC
Confidence 56789999999999988775 5799999854 3 22334433 224
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....|+|+|..++.... ...+...+....+........... +....|+|+++.++...
T Consensus 61 ~V~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------- 120 (317)
T d1vyhc1 61 SVQDISFDHSGKLLASCSA---------DMTIKLWDFQGFECIRTMHGHDHN----VSSVSIMPNGDHIVSAS------- 120 (317)
T ss_dssp CEEEEEECTTSSEEEEEET---------TSCCCEEETTSSCEEECCCCCSSC----EEEEEECSSSSEEEEEE-------
T ss_pred cEEEEeeeccccccccccc---------cccccccccccccccccccccccc----ceeeeccCCCceEEeec-------
Confidence 6888999999999888652 334455555554444333322221 55788999999888651
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~-~~~~~~~~SpDGk~l 346 (954)
....+..+++ ++.. ..+... ..+..++|+|||+.|
T Consensus 121 ------------------------------------------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 158 (317)
T d1vyhc1 121 ------------------------------------------RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI 158 (317)
T ss_dssp ------------------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred ------------------------------------------cCcceeEeecccceeeeEEccCCCcceeeecccCCCEE
Confidence 1233556677 5543 333333 566788999999999
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEE-------
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE------- 418 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~------- 418 (954)
+..+.+ +.+.+|+...+.. ..+.... ..+..+.|+|++........
T Consensus 159 ~~~~~d-------------~~v~~~~~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~~~~~~~ 212 (317)
T d1vyhc1 159 ASCSND-------------QTVRVWVVATKECKAELREHR-------------HVVECISWAPESSYSSISEATGSETKK 212 (317)
T ss_dssp EEEETT-------------SCEEEEETTTCCEEEEECCCS-------------SCEEEEEECCSCGGGGGGGCCSCC---
T ss_pred EEEeCC-------------CeEEEEeeccceeeEEEecCC-------------CCceEEEEeeccccceeeccccceeee
Confidence 887743 3788999885543 3333221 12234556665543221100
Q ss_pred eccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002194 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (954)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 498 (954)
....+......+..+.+.+++. .++.....+..+...+..+.|+|+|+.|+..+.++ .|.++|+.++ ++...
T Consensus 213 ~~~~~~~~~~~~~d~~i~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~--~~~~~ 284 (317)
T d1vyhc1 213 SGKPGPFLLSGSRDKTIKMWDV--STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK----TLRVWDYKNK--RCMKT 284 (317)
T ss_dssp ----CCEEEEEETTSEEEEEET--TTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT----EEEEECCTTS--CCCEE
T ss_pred eccCCceeEeccCCCEEEEEEC--CCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCC----eEEEEECCCC--cEEEE
Confidence 0000000011133457888885 23333344555666778899999999998876443 3666677764 33344
Q ss_pred ecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
...+...+.. ++|+|||++|+...
T Consensus 285 ~~~h~~~V~~------~~~s~~~~~l~s~s 308 (317)
T d1vyhc1 285 LNAHEHFVTS------LDFHKTAPYVVTGS 308 (317)
T ss_dssp EECCSSCEEE------EEECSSSSCEEEEE
T ss_pred EcCCCCCEEE------EEEcCCCCEEEEEe
Confidence 4444444444 78999999988765
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.46 E-value=6.6e-11 Score=128.73 Aligned_cols=313 Identities=11% Similarity=-0.007 Sum_probs=169.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.....++||||++|++... ...+...+||++|.++++.......+. ...++|||||+.|+++.......
T Consensus 22 p~~~~a~spdg~~~~~~~~----~~~~~~~~v~v~D~~tg~~~~~~~~~~------~~~~a~SpDG~~l~va~~~~~~~- 90 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLP----AHHSAIIQQWVLDAGSGSILGHVNGGF------LPNPVAAHSGSEFALASTSFSRI- 90 (373)
T ss_pred CccccccCCCCCEEEEEcc----cccCCCceEEEEECCCCCEEEEEeCCC------CccEEEcCCCCEEEEEeecCCcc-
Confidence 4677889999999987642 224456789999999988765433222 23689999999999872211110
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEc-CCC--------cccccccc
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI-GPP--------AVYTSLDP 339 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l-~~~--------~~~~~~~~ 339 (954)
.... ....|.++|+ +++.... ..+ .....+.|
T Consensus 91 -----------------------------~~~~---------~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (373)
T d2madh_ 91 -----------------------------AKGK---------RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN 132 (373)
T ss_pred -----------------------------cccc---------cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEE
Confidence 0000 1234777787 6654332 211 12245789
Q ss_pred CCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 340 SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
||||+.+++..... ...+.+++....+...... ....+.++|||+.+++..
T Consensus 133 s~dg~~~~v~~~~~-----------~~~~~~~~~~~~~~~~~~~----------------~~~~~~~s~~g~~~~v~~-- 183 (373)
T d2madh_ 133 TPNNADLLFFQFAA-----------GPAVGLVVQGGSSDDQLLS----------------SPTCYHIHPGAPSTFYLL-- 183 (373)
T ss_pred EeCCCcEEEEEEcC-----------CCceEEeeccCCeEEEEec----------------cceeEEEecCCCcEEEEE--
Confidence 99999988766332 1255667766544332221 123577999998765441
Q ss_pred ccCCCccccccCCCeEEEEecCCCCCCCceEE-eec------ccccCceeeccCCceEEEEEeccccceEEEEEcCCCCC
Q 002194 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKL------DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKD 492 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~------~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~ 492 (954)
...+.+.+++. .+++.... ... ........+++++..++.. .. ..++.++..++.
T Consensus 184 ----------~~dg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~v~~~~~~~~~ 245 (373)
T d2madh_ 184 ----------CAQGGLAKTDH---AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YS----GKILQADISAAG 245 (373)
T ss_pred ----------cCCCeEEEEEc---CCceeeEEEeeeccccCccceeeeEEECCCceEEEec-CC----ceEEEEEcCCCe
Confidence 22346777774 33333222 111 1111234555555544432 11 234444444421
Q ss_pred CCcEEEecCCCCCc---cCCC-CCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEe
Q 002194 493 VAPRILFDRSSEDV---YSDP-GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (954)
Q Consensus 493 ~~~~~l~~~~~~~~---~~~~-~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 568 (954)
.......+...... ...+ ....+++++||+.+++... .+..+ .... ....+.+||..+++.....
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~-~~~~------~~~~v~~~d~~t~~~~~~~ 314 (373)
T d2madh_ 246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTS----EQSAW-KLHA------AAKEVTSVTGLVGQTSSQI 314 (373)
T ss_pred EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecC----CCceE-Eeec------CCCeEEEEECCCCcEEEEe
Confidence 10000111000000 0000 1112678999988876652 12222 2221 2345999999988866554
Q ss_pred ccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeE
Q 002194 569 ESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (954)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~ 623 (954)
..... .. ...|||||+.++|...+.. ..+++||..+|+...
T Consensus 315 ~~~~~-----~~-------~~a~spDG~~~l~vt~~~d--~~v~v~D~~tg~~~~ 355 (373)
T d2madh_ 315 SLGHD-----VD-------AISVAQDGGPDLYALSAGT--EVLHIYDAGAGDQDQ 355 (373)
T ss_pred cCCCC-----ee-------EEEECCCCCEEEEEEeCCC--CeEEEEECCCCCEEE
Confidence 43321 11 2579999998776655433 579999999987644
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.45 E-value=2.6e-11 Score=127.19 Aligned_cols=268 Identities=10% Similarity=0.017 Sum_probs=166.8
Q ss_pred ceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhh
Q 002194 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (954)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (954)
...|.++|+++++..+....+.. ...++|||||++|+++..
T Consensus 11 ~~~v~v~D~~t~~~~~~i~~g~~-----p~~va~spdG~~l~v~~~---------------------------------- 51 (301)
T d1l0qa2 11 SDNISVIDVTSNKVTATIPVGSN-----PMGAVISPDGTKVYVANA---------------------------------- 51 (301)
T ss_dssp TTEEEEEETTTTEEEEEEECSSS-----EEEEEECTTSSEEEEEEG----------------------------------
T ss_pred CCEEEEEECCCCeEEEEEECCCC-----ceEEEEeCCCCEEEEEEC----------------------------------
Confidence 55789999999887655444432 457899999999986610
Q ss_pred hccCccccccccccccceEEEEEe-CCce-eEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC
Q 002194 298 LLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (954)
Q Consensus 298 ~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g 375 (954)
....|.++|+ +++. ..+........+.|++||+++++..... ..+.+|+..+
T Consensus 52 --------------~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 105 (301)
T d1l0qa2 52 --------------HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMAS------------STLSVIDTTS 105 (301)
T ss_dssp --------------GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTT------------TEEEEEETTT
T ss_pred --------------CCCEEEEEECCCCceeeeeecccccccccccccccccccccccc------------ceeeeccccc
Confidence 2345888998 7754 3344345567789999999998876332 3678888886
Q ss_pred ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecc
Q 002194 376 IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD 455 (954)
Q Consensus 376 ~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~ 455 (954)
++........ .....+.|+|||+.+++.. .....+.+++. ............
T Consensus 106 ~~~~~~~~~~-------------~~~~~~~~~~dg~~~~~~~------------~~~~~~~~~~~---~~~~~~~~~~~~ 157 (301)
T d1l0qa2 106 NTVAGTVKTG-------------KSPLGLALSPDGKKLYVTN------------NGDKTVSVINT---VTKAVINTVSVG 157 (301)
T ss_dssp TEEEEEEECS-------------SSEEEEEECTTSSEEEEEE------------TTTTEEEEEET---TTTEEEEEEECC
T ss_pred ceeeeecccc-------------ccceEEEeecCCCeeeeee------------ccccceeeeec---cccceeeecccC
Confidence 6543322211 2234688999999776651 12335667774 333333333344
Q ss_pred cccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCC
Q 002194 456 LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEG 535 (954)
Q Consensus 456 ~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~ 535 (954)
.....+.|+||++.++....... .++..+.... ......... ....+ +.++++|+.++....+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~-~~~~~------~~~~~~g~~~~v~~~~~---- 221 (301)
T d1l0qa2 158 RSPKGIAVTPDGTKVYVANFDSM---SISVIDTVTN--SVIDTVKVE-AAPSG------IAVNPEGTKAYVTNVDK---- 221 (301)
T ss_dssp SSEEEEEECTTSSEEEEEETTTT---EEEEEETTTT--EEEEEEECS-SEEEE------EEECTTSSEEEEEEECS----
T ss_pred CCceEEEeeccccceeeeccccc---ccccccccce--eeeeccccc-CCcce------eeccccccccccccccc----
Confidence 44567899999999887755432 3444444442 212222111 11112 67899999887665211
Q ss_pred cEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEE
Q 002194 536 TYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQS 615 (954)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~ 615 (954)
....|++||+.+++.......... +. ..+|||||+++++.... ...+.++|
T Consensus 222 --------------~~~~v~v~D~~t~~~~~~~~~~~~-----~~-------~va~spdg~~l~va~~~---~~~i~v~D 272 (301)
T d1l0qa2 222 --------------YFNTVSMIDTGTNKITARIPVGPD-----PA-------GIAVTPDGKKVYVALSF---CNTVSVID 272 (301)
T ss_dssp --------------SCCEEEEEETTTTEEEEEEECCSS-----EE-------EEEECTTSSEEEEEETT---TTEEEEEE
T ss_pred --------------eeeeeeeeecCCCeEEEEEcCCCC-----EE-------EEEEeCCCCEEEEEECC---CCeEEEEE
Confidence 124599999999876554333221 12 25799999988765543 24799999
Q ss_pred CCCCceeE
Q 002194 616 WPDKKSCQ 623 (954)
Q Consensus 616 ~~~g~~~~ 623 (954)
+.+++...
T Consensus 273 ~~t~~~~~ 280 (301)
T d1l0qa2 273 TATNTITA 280 (301)
T ss_dssp TTTTEEEE
T ss_pred CCCCeEEE
Confidence 98886543
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=1.3e-13 Score=141.99 Aligned_cols=191 Identities=12% Similarity=0.029 Sum_probs=118.3
Q ss_pred cEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 002194 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEV 750 (954)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l 750 (954)
|.||++||.+.... .|. ..+..| ++||.|++ .+.+|+|.+...... .+.|+.+ .+
T Consensus 12 ~~lvllHG~~~~~~-----------~~~----~~~~~L-~~~~~vi~---~D~~G~G~S~~~~~~---~~~d~~~---~~ 66 (256)
T d1m33a_ 12 VHLVLLHGWGLNAE-----------VWR----CIDEEL-SSHFTLHL---VDLPGFGRSRGFGAL---SLADMAE---AV 66 (256)
T ss_dssp SEEEEECCTTCCGG-----------GGG----GTHHHH-HTTSEEEE---ECCTTSTTCCSCCCC---CHHHHHH---HH
T ss_pred CeEEEECCCCCCHH-----------HHH----HHHHHH-hCCCEEEE---EeCCCCCCccccccc---ccccccc---cc
Confidence 56778999642211 121 234445 57899999 666788887543221 1233332 23
Q ss_pred HHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC-CC-CCcc-----------------------
Q 002194 751 VRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-PF-GFQN----------------------- 805 (954)
Q Consensus 751 ~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-~~-~~~~----------------------- 805 (954)
... ..+++.++||||||.+++.++.++|+.+++++.+.+....... .+ ....
T Consensus 67 ~~~---~~~~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (256)
T d1m33a_ 67 LQQ---APDKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLA 143 (256)
T ss_dssp HTT---SCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc---cccceeeeecccchHHHHHHHHhCCcccceeeeeecccccccchhhhhhHHHHHHHHHhhhhhhhHHHHHHHhh
Confidence 222 2368999999999999999999999999998887643211000 00 0000
Q ss_pred ------cc-chhhh-------------------cHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHH
Q 002194 806 ------ED-RTLWE-------------------ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (954)
Q Consensus 806 ------~~-~~~~~-------------------~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~ 859 (954)
.. ..... ....+...+....+.++++|+|+++|++|..+| .+.+.++.+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p--~~~~~~l~~~~- 220 (256)
T d1m33a_ 144 LQTMGTETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVP--RKVVPMLDKLW- 220 (256)
T ss_dssp TTSTTSTTHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSC--GGGCC-CTTTC-
T ss_pred hhhccccchhhHHHHHHHhhhhcchhhHHHHHhhhhhhcccchHHHHHhccCCccccccccCCCCC--HHHHHHHHHHC-
Confidence 00 00000 001112223344567789999999999999998 77766665443
Q ss_pred hCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 860 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.+.++++++++||.. ..++.+.+.+.|.+|+++
T Consensus 221 ---~~~~~~~i~~~gH~~-~~e~p~~~~~~l~~fl~~ 253 (256)
T d1m33a_ 221 ---PHSESYIFAKAAHAP-FISHPAEFCHLLVALKQR 253 (256)
T ss_dssp ---TTCEEEEETTCCSCH-HHHSHHHHHHHHHHHHTT
T ss_pred ---CCCEEEEECCCCCch-HHHCHHHHHHHHHHHHHH
Confidence 345899999999975 356678888888888875
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.43 E-value=1.1e-11 Score=133.99 Aligned_cols=313 Identities=11% Similarity=0.065 Sum_probs=173.0
Q ss_pred eecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCC
Q 002194 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (954)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~ 274 (954)
+.||||+++++... ........||++|+++|+......... ...++|||||+.|+++.....
T Consensus 8 a~spdg~~~~v~~~----~~~~~~~~v~v~D~~tg~~~~~~~~g~------~~~~a~SpDg~~l~v~~~~~~-------- 69 (355)
T d2bbkh_ 8 APAPDARRVYVNDP----AHFAAVTQQFVIDGEAGRVIGMIDGGF------LPNPVVADDGSFIAHASTVFS-------- 69 (355)
T ss_dssp CCCCCTTEEEEEEC----GGGCSSEEEEEEETTTTEEEEEEEECS------SCEEEECTTSSCEEEEEEEEE--------
T ss_pred eeCCCCCEEEEEec----ccCCCcCeEEEEECCCCcEEEEEECCC------CCceEEcCCCCEEEEEeCCCc--------
Confidence 56899999966532 123346789999999988755443332 336899999999987611000
Q ss_pred CCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE-cC--CC------ccccccccCCCCc
Q 002194 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IG--PP------AVYTSLDPSPDEK 344 (954)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~-l~--~~------~~~~~~~~SpDGk 344 (954)
..........|+++|+ +++... +. .. .....+.|||||+
T Consensus 70 -------------------------------~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 118 (355)
T d2bbkh_ 70 -------------------------------RIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK 118 (355)
T ss_dssp -------------------------------ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred -------------------------------cccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCC
Confidence 0000002345778888 665432 21 11 2234678999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
++++.+... ...+.+++..+++.. .+......... .......+.+++||+.+++.. .
T Consensus 119 ~~~v~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~dg~~~~v~~--~--- 176 (355)
T d2bbkh_ 119 TLLFYQFSP-----------APAVGVVDLEGKAFKRMLDVPDCYHIF------PTAPDTFFMHCRDGSLAKVAF--G--- 176 (355)
T ss_dssp EEEEEECSS-----------SCEEEEEETTTTEEEEEEECCSEEEEE------EEETTEEEEEETTSCEEEEEC--C---
T ss_pred eeEEecCCC-----------CceeeeeecCCCcEeeEEecCCcceEe------ecCCcceEEEcCCCCEEEEEe--c---
Confidence 998876332 126778888866543 33321111100 112334578899998655541 1
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE--ecC
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL--FDR 501 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l--~~~ 501 (954)
....+.+.+. .... ......+..+.+++++..+++.... .++++++..++. ...+ .+.
T Consensus 177 -------~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~--~~~~~~~~~ 236 (355)
T d2bbkh_ 177 -------TEGTPEITHT---EVFH----PEDEFLINHPAYSQKAGRLVWPTYT----GKIHQIDLSSGD--AKFLPAVEA 236 (355)
T ss_dssp -------SSSCCEEEEC---CCCS----CTTSCBCSCCEEETTTTEEEEEBTT----SEEEEEECTTSS--CEECCCEES
T ss_pred -------CCCeEEEEec---cccc----ceecceeeeccccCCCCeEEEecCC----CeEEEEecCCCc--EEEEeccCC
Confidence 1112233332 1110 0112224456788888888887433 357888877752 2222 111
Q ss_pred CCCCc----cCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccc
Q 002194 502 SSEDV----YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 577 (954)
Q Consensus 502 ~~~~~----~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 577 (954)
..... ....+...+++++||+.++....... ..........|++||+.+++..........
T Consensus 237 ~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~---- 301 (355)
T d2bbkh_ 237 LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD-----------EWRHKTASRFVVVLDAKTGERLAKFEMGHE---- 301 (355)
T ss_dssp SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC-----------TTCTTSCEEEEEEEETTTCCEEEEEEEEEE----
T ss_pred cccceEeeeeeccceEEEEEeCCCCeEEEEeccCC-----------ceeecCCCCeEEEEeCCCCcEEEEecCCCC----
Confidence 10000 00011223778899988877664321 011111235699999998876544332211
Q ss_pred eeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeE
Q 002194 578 TTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (954)
Q Consensus 578 ~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~ 623 (954)
+. ..+|||||+.+++...+.. ..|+++|..+++...
T Consensus 302 -~~-------~~a~spDG~~~l~v~~~~d--~~i~v~D~~tg~~~~ 337 (355)
T d2bbkh_ 302 -ID-------SINVSQDEKPLLYALSTGD--KTLYIHDAESGEELR 337 (355)
T ss_dssp -EC-------EEEECCSSSCEEEEEETTT--TEEEEEETTTCCEEE
T ss_pred -EE-------EEEEcCCCCeEEEEEECCC--CEEEEEECCCCCEEE
Confidence 11 2579999997776655433 679999999987543
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.43 E-value=1.8e-12 Score=135.31 Aligned_cols=220 Identities=13% Similarity=0.105 Sum_probs=133.7
Q ss_pred CceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEE
Q 002194 637 LQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (954)
Q Consensus 637 ~~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (954)
++++.+++++. -|..|+..+. + +++|+|+++||.+... +. ..|... ....+.+++.|++|
T Consensus 4 ~~v~~~~~~s~~~~r~i~~~~~-~--------~~~p~lyllhG~~g~~-d~--------~~W~~~-~~~~~~~~~~~~iv 64 (280)
T d1dqza_ 4 LPVEYLQVPSASMGRDIKVQFQ-G--------GGPHAVYLLDGLRAQD-DY--------NGWDIN-TPAFEEYYQSGLSV 64 (280)
T ss_dssp SCEEEEEEEETTTTEEEEEEEE-C--------CSSSEEEECCCTTCCS-SS--------CHHHHH-SCHHHHHTTSSSEE
T ss_pred cEEEEEEEecccCCCcceEEee-C--------CCCCEEEECCCCCCCC-cc--------chhhhc-chHHHHHHhCCcEE
Confidence 56788888765 5777877663 1 1379999999942100 00 011110 12345677899999
Q ss_pred EEcCCCCCCCCCCc---------ccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccE
Q 002194 716 LGGPTTPIIGEGDE---------EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (954)
Q Consensus 716 ~~~~~~~~~G~G~~---------~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a 786 (954)
|.++......+... .....+....++|+ +.+|.++..+|+++++|+|+||||++|+.+++++|++|++
T Consensus 65 V~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el---~~~i~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~a 141 (280)
T d1dqza_ 65 IMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREM---PAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPY 141 (280)
T ss_dssp EEECCCTTCTTSBCSSSCTTTTCCSCCBHHHHHHTHH---HHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSE
T ss_pred EEECCCCCCcCccccCCcccccCCcchhHHHHHHHHH---HHHHHHhcCCCCCceEEEEechHHHHHHHHHHhCcCceeE
Confidence 99765221111110 01123444455544 4556566668999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCC----------ccccchhhh--cHHHHHhcCcccccCCC---CCCEEEEEeCCCCCCCCc----
Q 002194 787 GIARSGAYNRTLTPFGF----------QNEDRTLWE--ATSTYVEMSPFMSANKL---KKPILLVHGEEDNNSGTL---- 847 (954)
Q Consensus 787 ~v~~~~~~~~~~~~~~~----------~~~~~~~~~--~~~~~~~~sp~~~~~~~---~~P~Lii~G~~D~~v~~~---- 847 (954)
+++++|.++........ .......+. ....+...+|...++++ ..++++.+|..|......
T Consensus 142 v~s~SG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 221 (280)
T d1dqza_ 142 AASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIP 221 (280)
T ss_dssp EEEESCCCCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHH
T ss_pred EEEecCccCcccCcchhhhhhhHhhccCCCHhhccCCcchhhhhhcCHHHHHHHhhhcCCeEEEEeCCCCCccccccccc
Confidence 99999987643221100 000001110 12234556777666554 367899999887654200
Q ss_pred --------hHHHHHHHHHHHhCCCc-EEEEEeCCCCCcCC
Q 002194 848 --------TMQSDRFFNALKGHGAL-CRLVILPFESHGYA 878 (954)
Q Consensus 848 --------~~~~~~~~~~l~~~g~~-~~~~~~~~~~H~~~ 878 (954)
....+++.++|+..+.. +.+.+.++.+|.+.
T Consensus 222 ~~~~e~~~~~~~~~~~~~l~~~g~~~~~~~~~~~GgH~W~ 261 (280)
T d1dqza_ 222 AKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSWP 261 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCCeEEEEEcCCCccCch
Confidence 23467788889888765 44444456689763
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.40 E-value=1.5e-12 Score=136.47 Aligned_cols=212 Identities=14% Similarity=0.077 Sum_probs=125.2
Q ss_pred EEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCC
Q 002194 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT 720 (954)
Q Consensus 641 ~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~ 720 (954)
..+++. +|.+|+.... + + -|+||++||.+... ..| ...+..| +++|.|++
T Consensus 10 ~~~~~~-~~~~l~y~~~---G-----~--gp~vv~lHG~~~~~-----------~~~----~~~~~~l-~~~~~vi~--- 59 (293)
T d1ehya_ 10 HYEVQL-PDVKIHYVRE---G-----A--GPTLLLLHGWPGFW-----------WEW----SKVIGPL-AEHYDVIV--- 59 (293)
T ss_dssp EEEEEC-SSCEEEEEEE---E-----C--SSEEEEECCSSCCG-----------GGG----HHHHHHH-HTTSEEEE---
T ss_pred ceEEEE-CCEEEEEEEE---C-----C--CCeEEEECCCCCCH-----------HHH----HHHHHHH-hcCCEEEE---
Confidence 344543 6778875443 1 2 47789999964211 111 1233344 56999999
Q ss_pred CCCCCCCCcccc------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCC
Q 002194 721 TPIIGEGDEEAN------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (954)
Q Consensus 721 ~~~~G~G~~~~~------~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (954)
.+..|+|.+... ........+|+.+.++.+ +.+++.++||||||.+++.++.++|+++.++|+++++.
T Consensus 60 ~D~~G~G~s~~~~~~~~~~~~~~~~a~~~~~~~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 133 (293)
T d1ehya_ 60 PDLRGFGDSEKPDLNDLSKYSLDKAADDQAALLDAL------GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQ 133 (293)
T ss_dssp ECCTTSTTSCCCCTTCGGGGCHHHHHHHHHHHHHHT------TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSC
T ss_pred ecCCcccCCccccccccccccchhhhhHHHhhhhhc------CccccccccccccccchhcccccCccccceeeeeeccC
Confidence 555677766432 112334455555444332 34689999999999999999999999999999998753
Q ss_pred CCCC---CCCCC---------ccc---------c----chh-------h---------hcHH-----------------H
Q 002194 795 NRTL---TPFGF---------QNE---------D----RTL-------W---------EATS-----------------T 816 (954)
Q Consensus 795 ~~~~---~~~~~---------~~~---------~----~~~-------~---------~~~~-----------------~ 816 (954)
.... ..... ... . ... | +... .
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (293)
T d1ehya_ 134 PDFGPVYFGLGHVHESWYSQFHQLDMAVEVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFNY 213 (293)
T ss_dssp TTC-----------CCHHHHHTTCHHHHHHHTSCHHHHHHHHHHHHHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHH
T ss_pred ccccchhhhhhhhhhhhhhhhhccchhhhhhccchhHHHHHHHHhhhhcccccccccHHHHHhhhhccccchhhhhhhhh
Confidence 2100 00000 000 0 000 0 0000 0
Q ss_pred HHh-cCcc------cccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHH
Q 002194 817 YVE-MSPF------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889 (954)
Q Consensus 817 ~~~-~sp~------~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~ 889 (954)
|.. ..+. .....+++|+|+++|++|..+| .....++.+.+ ..++++++++++||.. ..+..+.+.+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~Pvlii~G~~D~~~~--~~~~~~~~~~~---~~~~~~~~i~~~gH~~-~~e~Pe~~~~~ 287 (293)
T d1ehya_ 214 YRANIRPDAALWTDLDHTMSDLPVTMIWGLGDTCVP--YAPLIEFVPKY---YSNYTMETIEDCGHFL-MVEKPEIAIDR 287 (293)
T ss_dssp HHHHSSSSCCCCCTGGGSCBCSCEEEEEECCSSCCT--THHHHHHHHHH---BSSEEEEEETTCCSCH-HHHCHHHHHHH
T ss_pred hhhccccchhhhhhhhhhccCCceEEEEeCCCCCcC--HHHHHHHHHHh---CCCCEEEEECCCCCch-HHHCHHHHHHH
Confidence 000 0000 0123467899999999999988 77766655544 2358999999999976 35566677777
Q ss_pred HHHHH
Q 002194 890 TDRWL 894 (954)
Q Consensus 890 i~~fl 894 (954)
|.+||
T Consensus 288 I~~Ff 292 (293)
T d1ehya_ 288 IKTAF 292 (293)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 77775
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.40 E-value=5.3e-12 Score=137.87 Aligned_cols=232 Identities=12% Similarity=0.073 Sum_probs=134.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+...+|||||+.||+.. .+..|.+++.++++...+....+ ....+..++|+|||++|+...
T Consensus 9 pIt~~~~s~dg~~la~~~---------~~~~i~iw~~~~~~~~~~~~l~g--H~~~V~~l~fsp~~~~l~s~s------- 70 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICP---------NNHEVHIYEKSGNKWVQVHELKE--HNGQVTGVDWAPDSNRIVTCG------- 70 (371)
T ss_dssp CCCEEEECTTSSEEEEEC---------SSSEEEEEEEETTEEEEEEEEEC--CSSCEEEEEEETTTTEEEEEE-------
T ss_pred CeEEEEECCCCCEEEEEe---------CCCEEEEEECCCCCEEEEEEecC--CCCCEEEEEECCCCCEEEEEE-------
Confidence 478899999999999864 24467777877776443322111 111277899999999988661
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee---EcCCC-ccccccccCCCCc
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK---EIGPP-AVYTSLDPSPDEK 344 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~---~l~~~-~~~~~~~~SpDGk 344 (954)
. ...|.++++ ++... .+... ..+..+.|+|||+
T Consensus 71 --------------~----------------------------D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~ 108 (371)
T d1k8kc_ 71 --------------T----------------------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK 108 (371)
T ss_dssp --------------T----------------------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS
T ss_pred --------------C----------------------------CCeEEEEeecccccccccccccccccccccccccccc
Confidence 1 123556666 44322 22233 6678899999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
+|+..+..+ .+.+|+.+........... .......+..++|+|||+.++..
T Consensus 109 ~l~~~s~d~-------------~i~i~~~~~~~~~~~~~~~--------~~~~~~~v~~v~~~p~~~~l~s~-------- 159 (371)
T d1k8kc_ 109 KFAVGSGSR-------------VISICYFEQENDWWVCKHI--------KKPIRSTVLSLDWHPNSVLLAAG-------- 159 (371)
T ss_dssp EEEEEETTS-------------SEEEEEEETTTTEEEEEEE--------CTTCCSCEEEEEECTTSSEEEEE--------
T ss_pred cceeecccC-------------cceeeeeeccccccccccc--------ccccccccccccccccccceecc--------
Confidence 999887432 6777877643211111100 00112345678999999876544
Q ss_pred ccccccCCCeEEEEecCCCCC---------------CC-ceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQG---------------EG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g---------------~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
+..+.+.+|+...... ++ ......+...+..++|+|||+.|+..+.++ .|.++|.
T Consensus 160 -----s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~----~i~iwd~ 230 (371)
T d1k8kc_ 160 -----SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS----TVCLADA 230 (371)
T ss_dssp -----ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT----EEEEEEG
T ss_pred -----ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCC----cceEEee
Confidence 2234566665310000 00 011122344566789999999988876443 3555566
Q ss_pred CCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEE
Q 002194 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (954)
Q Consensus 489 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 527 (954)
..+ ............+.+ +.|+|||+.|+..
T Consensus 231 ~~~--~~~~~~~~~~~~v~s------~~fs~d~~~la~g 261 (371)
T d1k8kc_ 231 DKK--MAVATLASETLPLLA------VTFITESSLVAAG 261 (371)
T ss_dssp GGT--TEEEEEECSSCCEEE------EEEEETTEEEEEE
T ss_pred ecc--cceeeeeccccccee------eeecCCCCEEEEE
Confidence 554 222223333333333 7899999877654
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.36 E-value=2.1e-10 Score=120.31 Aligned_cols=283 Identities=11% Similarity=0.078 Sum_probs=164.3
Q ss_pred eeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEE
Q 002194 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (954)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (954)
..|.++. ..+..++|||||+.|+..+. ...|.++|+++++........... +..+.|+|++..++
T Consensus 11 ~~L~GH~--~~I~~l~~sp~~~~l~s~s~---------Dg~i~iWd~~~~~~~~~~~~h~~~----V~~~~~~~~~~~~~ 75 (317)
T d1vyhc1 11 YALSGHR--SPVTRVIFHPVFSVMVSASE---------DATIKVWDYETGDFERTLKGHTDS----VQDISFDHSGKLLA 75 (317)
T ss_dssp CEEECCS--SCEEEEEECSSSSEEEEEES---------SSCEEEEETTTCCCCEEECCCSSC----EEEEEECTTSSEEE
T ss_pred EEEcCCC--CCeEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCCEEEEEeCCCCc----EEEEeeeccccccc
Confidence 3455543 46899999999998887542 356777788887765544333322 67899999999988
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE-cCCC-ccccc
Q 002194 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-AVYTS 336 (954)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~-l~~~-~~~~~ 336 (954)
..... ..+...+. ...... +... .....
T Consensus 76 ~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (317)
T d1vyhc1 76 SCSAD-------------------------------------------------MTIKLWDFQGFECIRTMHGHDHNVSS 106 (317)
T ss_dssp EEETT-------------------------------------------------SCCCEEETTSSCEEECCCCCSSCEEE
T ss_pred ccccc-------------------------------------------------ccccccccccccccccccccccccee
Confidence 76211 11223333 222222 2222 55667
Q ss_pred cccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 337 ~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
..|+||++.++..+.+ +.+.+|++..+. ...+..+. .....++|+||++.++.
T Consensus 107 ~~~~~~~~~~~~~~~d-------------~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~ 160 (317)
T d1vyhc1 107 VSIMPNGDHIVSASRD-------------KTIKMWEVQTGYCVKTFTGHR-------------EWVRMVRPNQDGTLIAS 160 (317)
T ss_dssp EEECSSSSEEEEEETT-------------SEEEEEETTTCCEEEEEECCS-------------SCEEEEEECTTSSEEEE
T ss_pred eeccCCCceEEeeccC-------------cceeEeecccceeeeEEccCC-------------CcceeeecccCCCEEEE
Confidence 8899999999887733 378899998554 33343321 23356889999986655
Q ss_pred EEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCc--------------------eEEEEEe
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSL--------------------ALVYESW 475 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~--------------------~l~~~~~ 475 (954)
. +..+.+.+++. ..+.....+......+..+.|+|++. .++.. .
T Consensus 161 ~-------------~~d~~v~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 224 (317)
T d1vyhc1 161 C-------------SNDQTVRVWVV--ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG-S 224 (317)
T ss_dssp E-------------ETTSCEEEEET--TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE-E
T ss_pred E-------------eCCCeEEEEee--ccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec-c
Confidence 4 33456777775 22222233333344444555655543 23332 2
Q ss_pred ccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEE
Q 002194 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLD 555 (954)
Q Consensus 476 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 555 (954)
.+ ..+...+..++ .+......+...+.. +.|+|+|++|+.... ...|+
T Consensus 225 ~d---~~i~~~~~~~~--~~~~~~~~~~~~v~~------~~~~~~~~~l~s~~~---------------------dg~i~ 272 (317)
T d1vyhc1 225 RD---KTIKMWDVSTG--MCLMTLVGHDNWVRG------VLFHSGGKFILSCAD---------------------DKTLR 272 (317)
T ss_dssp TT---SEEEEEETTTT--EEEEEEECCSSCEEE------EEECSSSSCEEEEET---------------------TTEEE
T ss_pred CC---CEEEEEECCCC--cEEEEEeCCCCCEEE------EEECCCCCEEEEEEC---------------------CCeEE
Confidence 22 23556666664 333333333333333 789999998887652 23599
Q ss_pred EEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEE
Q 002194 556 LFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQS 615 (954)
Q Consensus 556 ~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~ 615 (954)
+||+.+++.......... .+.. .+|+||++.|+.... -..|++|+
T Consensus 273 iwd~~~~~~~~~~~~h~~----~V~~-------~~~s~~~~~l~s~s~----Dg~i~iWd 317 (317)
T d1vyhc1 273 VWDYKNKRCMKTLNAHEH----FVTS-------LDFHKTAPYVVTGSV----DQTVKVWE 317 (317)
T ss_dssp EECCTTSCCCEEEECCSS----CEEE-------EEECSSSSCEEEEET----TSEEEEEC
T ss_pred EEECCCCcEEEEEcCCCC----CEEE-------EEEcCCCCEEEEEeC----CCeEEEeC
Confidence 999988876554433211 1222 468999987664322 23466653
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.36 E-value=2.6e-10 Score=121.31 Aligned_cols=287 Identities=11% Similarity=-0.054 Sum_probs=158.3
Q ss_pred eceEEEEccCCCCCCc-eeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQ-EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~-~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
+.|.+||+.. ++ ...+.....+.....++|||||++|+.+.. ....|+++|+++++...-.......
T Consensus 11 ~~v~v~D~~s----~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~--------~~~~v~v~D~~t~~~~~~~~~~~~~ 78 (337)
T d1pbyb_ 11 DKLVVIDTEK----MAVDKVITIADAGPTPMVPMVAPGGRIAYATVN--------KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp TEEEEEETTT----TEEEEEEECTTCTTCCCCEEECTTSSEEEEEET--------TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred CEEEEEECCC----CeEEEEEECCCCCCCccEEEECCCCCEEEEEEC--------CCCeEEEEECCCCcEEEEEecCCCc
Confidence 4899999854 33 223332122335778999999998876432 3467999999998875443322211
Q ss_pred -ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEE
Q 002194 242 -LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (954)
Q Consensus 242 -~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~ 320 (954)
.......++|+|||+.++......... ..........+..++
T Consensus 79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~d 121 (337)
T d1pbyb_ 79 ERVKSLFGAALSPDGKTLAIYESPVRLE-------------------------------------LTHFEVQPTRVALYD 121 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEEC-------------------------------------SSCEEECCCEEEEEE
T ss_pred ccccceeeEEEcCCCcEEEEeecCCcce-------------------------------------eeeccccccceeecc
Confidence 011144789999999998772110000 000000234567778
Q ss_pred e-CCceeEc-CCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEE-eccCCCcccCCcccccc
Q 002194 321 L-DGTVKEI-GPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSV 397 (954)
Q Consensus 321 ~-~G~~~~l-~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~-l~~~~~~~~~p~~~~~~ 397 (954)
. +++.... ........++|||||++++..+. ++.+||...++... +......
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---------------~~~~~d~~~~~~~~~~~~~~~~---------- 176 (337)
T d1pbyb_ 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGR---------------DLHVMDPEAGTLVEDKPIQSWE---------- 176 (337)
T ss_dssp TTTTEEEEEEECCSSCCCEEECTTSSCEEEESS---------------SEEEEETTTTEEEEEECSTTTT----------
T ss_pred ccCCeEEEeccccCCceEEEEcCCCCEEEEEcC---------------CcceeeeecCcEEEEeecCCcc----------
Confidence 7 6654433 33366778899999999987641 56678887655433 2221111
Q ss_pred ccCccceeeccCCCCce----------EE--EEeccCCCccccccCCCeEEEEecCCCCCCCceEE--eecccccCceee
Q 002194 398 RKGMRSINWRSDKPSTL----------YW--AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISW 463 (954)
Q Consensus 398 ~~g~~~~~wspDg~~i~----------~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~ 463 (954)
....++|++..+. .. ....+.. ..........+++++. ..+..... ...........+
T Consensus 177 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 248 (337)
T d1pbyb_ 177 ----AETYAQPDVLAVWNQHESSGVMATPFYTARKDID-PADPTAYRTGLLTMDL---ETGEMAMREVRIMDVFYFSTAV 248 (337)
T ss_dssp ----TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC-TTSGGGEEEEEEEEET---TTCCEEEEEEEECSSCEEEEEE
T ss_pred ----ccceecCCcceeeccccccceeeeeeeeeeeccc-eeeecccCccEEEEEc---CCCcEEEEEecCCCcceEEEEe
Confidence 1122333333221 10 1111111 1111122346777775 44443322 333344455788
Q ss_pred ccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecC
Q 002194 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGN 543 (954)
Q Consensus 464 spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~ 543 (954)
+|+++.++... ..|.++|+.++ +....... ...+.. ++|||||++|+....
T Consensus 249 ~~~~~~~~~~~------~~i~v~d~~~~--~~~~~~~~-~~~~~~------~~~s~dG~~l~v~~~-------------- 299 (337)
T d1pbyb_ 249 NPAKTRAFGAY------NVLESFDLEKN--ASIKRVPL-PHSYYS------VNVSTDGSTVWLGGA-------------- 299 (337)
T ss_dssp CTTSSEEEEEE------SEEEEEETTTT--EEEEEEEC-SSCCCE------EEECTTSCEEEEESB--------------
T ss_pred cccceEEEEcc------ccEEEEECCCC--cEEEEEcC-CCCEEE------EEECCCCCEEEEEeC--------------
Confidence 99998876542 34777888875 22221111 111222 889999999876541
Q ss_pred CCCCCCCCCeEEEEECCCCCeEEE
Q 002194 544 GATPEGNIPFLDLFDINTGSKERI 567 (954)
Q Consensus 544 ~~~~~~~~~~l~~~d~~~g~~~~l 567 (954)
...|.+||.++++...-
T Consensus 300 -------~~~i~v~D~~t~~~v~~ 316 (337)
T d1pbyb_ 300 -------LGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp -------SSEEEEEETTTCCEEEE
T ss_pred -------CCcEEEEECCCCcEEEE
Confidence 23499999998876543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.35 E-value=9e-11 Score=125.56 Aligned_cols=294 Identities=10% Similarity=-0.034 Sum_probs=162.3
Q ss_pred eeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCC
Q 002194 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (954)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~ 273 (954)
|++|+||++|+.... ...|.++|+++++.......+... ....++|+|||++++++..
T Consensus 2 ~a~~~~~~~l~~~~~---------~~~v~v~D~~t~~~~~t~~~~~~~---~p~~l~~spDG~~l~v~~~---------- 59 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNY---------PNNLHVVDVASDTVYKSCVMPDKF---GPGTAMMAPDNRTAYVLNN---------- 59 (346)
T ss_dssp CCCCTTCEEEEEEET---------TTEEEEEETTTTEEEEEEECSSCC---SSCEEEECTTSSEEEEEET----------
T ss_pred ccCCCCCcEEEEEcC---------CCEEEEEECCCCCEEEEEEcCCCC---CcceEEECCCCCEEEEEEC----------
Confidence 789999999998653 568999999998876543333211 1458999999999987610
Q ss_pred CCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE-cCCC-------ccccccccCCCCc
Q 002194 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-------AVYTSLDPSPDEK 344 (954)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~-l~~~-------~~~~~~~~SpDGk 344 (954)
....|+.+|+ +++... +... .....++|||||+
T Consensus 60 --------------------------------------~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~ 101 (346)
T d1jmxb_ 60 --------------------------------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK 101 (346)
T ss_dssp --------------------------------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS
T ss_pred --------------------------------------CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCC
Confidence 1245778888 774332 2211 2345789999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
++++........... .......+.+++...++. ..+.... ...+...+.+++|++ +++.
T Consensus 102 ~l~v~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-~~~~------- 161 (346)
T d1jmxb_ 102 EVYATVNPTQRLNDH-YVVKPPRLEVFSTADGLEAKPVRTFP-----------MPRQVYLMRAADDGS-LYVA------- 161 (346)
T ss_dssp EEEEEEEEEEECSSC-EEECCCEEEEEEGGGGGGBCCSEEEE-----------CCSSCCCEEECTTSC-EEEE-------
T ss_pred EEEEEecCCcceeee-eccCcceEEEEecccceeeeEEEeee-----------ccCceEEEEecCCCE-EEEe-------
Confidence 998776432211000 001123566676654321 1111110 011223455666664 3332
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccc----------------------cce
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT----------------------RRT 481 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~----------------------~~~ 481 (954)
...+.++++ ..++.............+.++|++..++....... ...
T Consensus 162 --------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (346)
T d1jmxb_ 162 --------GPDIYKMDV---KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 230 (346)
T ss_dssp --------SSSEEEECT---TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred --------CCcceEEEc---cCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence 124556664 33333222223333456777888776543321111 113
Q ss_pred EEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCC
Q 002194 482 RTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINT 561 (954)
Q Consensus 482 ~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 561 (954)
.+..++..++.. ...........+.. ..+++++.++++... ..+++||+++
T Consensus 231 ~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~----------------------~~v~v~d~~~ 281 (346)
T d1jmxb_ 231 GYLSVDLKTGKT-HTQEFADLTELYFT------GLRSPKDPNQIYGVL----------------------NRLAKYDLKQ 281 (346)
T ss_dssp EEEEEETTTCCE-EEEEEEECSSCEEE------EEECSSCTTEEEEEE----------------------SEEEEEETTT
T ss_pred eEEEEECCCCce-EEEEeecccceeEE------EEEeCCCCEEEEecC----------------------CeEEEEECCC
Confidence 455666665421 11112122222222 567778877776652 2489999999
Q ss_pred CCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeE
Q 002194 562 GSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (954)
Q Consensus 562 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~ 623 (954)
++..+....... + ...+|||||++++.... ...+.++|+.+++...
T Consensus 282 ~~~~~~~~~~~~-----~-------~~va~s~DG~~l~v~~~----d~~v~v~D~~t~~~i~ 327 (346)
T d1jmxb_ 282 RKLIKAANLDHT-----Y-------YCVAFDKKGDKLYLGGT----FNDLAVFNPDTLEKVK 327 (346)
T ss_dssp TEEEEEEECSSC-----C-------CEEEECSSSSCEEEESB----SSEEEEEETTTTEEEE
T ss_pred CcEEEEEcCCCC-----E-------EEEEEcCCCCEEEEEeC----CCcEEEEECccCCEEE
Confidence 876554443321 1 12579999998875433 2579999998876543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.34 E-value=6.2e-11 Score=126.41 Aligned_cols=143 Identities=10% Similarity=0.041 Sum_probs=90.2
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..+....+.+++..++....+ +.+.+||+..++.. .+..+. ..+..++|+|||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~d-------------~~v~i~d~~~~~~~~~~~~h~-------------~~i~~v~~~p~~ 238 (340)
T d1tbga_ 185 GDVMSLSLAPDTRLFVSGACD-------------ASAKLWDVREGMCRQTFTGHE-------------SDINAICFFPNG 238 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETT-------------TEEEEEETTTTEEEEEECCCS-------------SCEEEEEECTTS
T ss_pred eeEeeeccccccceeEEeecC-------------ceEEEEECCCCcEEEEEeCCC-------------CCeEEEEECCCC
Confidence 344556777888887766532 38999999865543 333221 345678999999
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEe--ecccccCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
+.++.. +..+.+.++++ ..... ..+. .....+..++|+|+|+.|+..+.++ .|+++|
T Consensus 239 ~~l~s~-------------s~d~~i~~~~~---~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg----~i~iwd 298 (340)
T d1tbga_ 239 NAFATG-------------SDDATCRLFDL---RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF----NCNVWD 298 (340)
T ss_dssp SEEEEE-------------ETTSCEEEEET---TTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTS----CEEEEE
T ss_pred CEEEEE-------------eCCCeEEEEee---cccccccccccccccCceEEEEECCCCCEEEEEECCC----EEEEEE
Confidence 866554 33557888885 33322 2222 2233456789999999988876543 255667
Q ss_pred CCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 488 PGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 488 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+.++ +.......+...+.. +.|+|||++|+...
T Consensus 299 ~~~~--~~~~~~~~H~~~V~~------l~~s~d~~~l~s~s 331 (340)
T d1tbga_ 299 ALKA--DRAGVLAGHDNRVSC------LGVTDDGMAVATGS 331 (340)
T ss_dssp TTTC--CEEEEECCCSSCEEE------EEECTTSSCEEEEE
T ss_pred CCCC--cEEEEEcCCCCCEEE------EEEeCCCCEEEEEc
Confidence 7664 334444444444444 78999999988765
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.32 E-value=7.5e-11 Score=128.34 Aligned_cols=265 Identities=11% Similarity=-0.080 Sum_probs=139.3
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccc-cCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAE-DSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~-~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
.+||++|..+ ++...... . .....++|||||++|++.+..... ..+.....|+++|+.+++.......+...
T Consensus 46 ~~~~~~d~~~----~~~~~~~~--~-~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~ 118 (368)
T d1mdah_ 46 TENWVSCAGC----GVTLGHSL--G-AFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP 118 (368)
T ss_dssp EEEEEEETTT----TEEEEEEE--E-CTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC
T ss_pred ceEEEEeCCC----CcEEEEEe--C-CCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccc
Confidence 4789988643 44333221 1 224568999999999998753311 11233456999999988765443222110
Q ss_pred ---ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEE
Q 002194 242 ---LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (954)
Q Consensus 242 ---~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~ 318 (954)
.......++|||||++|+++... ...+++
T Consensus 119 ~~~~g~~p~~~a~SpDGk~l~va~~~------------------------------------------------~~~v~~ 150 (368)
T d1mdah_ 119 RFSVGPRVHIIGNCASSACLLFFLFG------------------------------------------------SSAAAG 150 (368)
T ss_dssp SCCBSCCTTSEEECTTSSCEEEEECS------------------------------------------------SSCEEE
T ss_pred eecccCCccceEECCCCCEEEEEeCC------------------------------------------------CCeEEE
Confidence 00013368999999999977211 123445
Q ss_pred EEe-CCceeE-cCCC--------ccccccccCCCCcEEEEEeecCCccccc--------------c---------cCCCC
Q 002194 319 VSL-DGTVKE-IGPP--------AVYTSLDPSPDEKYILISSIHRPYSFIV--------------P---------CGRFP 365 (954)
Q Consensus 319 ~~~-~G~~~~-l~~~--------~~~~~~~~SpDGk~l~~~s~~~~~~~~~--------------~---------~~~~~ 365 (954)
+|+ +++... +..+ +....+.+++||+.+++........... + .....
T Consensus 151 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 230 (368)
T d1mdah_ 151 LSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA 230 (368)
T ss_dssp EEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS
T ss_pred EECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecC
Confidence 555 443222 1111 1112345566666555543322110000 0 00112
Q ss_pred cceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCC
Q 002194 366 RQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG 445 (954)
Q Consensus 366 ~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 445 (954)
..+++++..++....+..................+...++++||++.+++....... ........|+++|+ .+
T Consensus 231 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~----~~~~~~~~v~v~D~---~t 303 (368)
T d1mdah_ 231 SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR----SCLAAAENTSSVTA---SV 303 (368)
T ss_dssp SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSS----CTTSCEEEEEEEES---SS
T ss_pred CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCc----eeecCCceEEEEEC---CC
Confidence 245666666554444332221110000001112344568999999876665332211 11133457899996 44
Q ss_pred CCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 446 EGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
++..........+..++|||||+.++|.++... ..|+++|..++
T Consensus 304 ~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~--~~v~v~D~~tg 347 (368)
T d1mdah_ 304 GQTSGPISNGHDSDAIIAAQDGASDNYANSAGT--EVLDIYDAASD 347 (368)
T ss_dssp CCEEECCEEEEEECEEEECCSSSCEEEEEETTT--TEEEEEESSSC
T ss_pred CcEeEEecCCCceeEEEECCCCCEEEEEEeCCC--CeEEEEECCCC
Confidence 443222233445678999999998888776544 46999999886
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.31 E-value=6.2e-12 Score=128.72 Aligned_cols=194 Identities=12% Similarity=0.020 Sum_probs=112.3
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~ 749 (954)
.|+||++||.+... ..| ...+..|++.||.|++ .|.+|+|.+........... ..+...
T Consensus 16 ~P~ivllHG~~~~~-----------~~~----~~~~~~L~~~g~~vi~---~Dl~G~G~s~~~~~~~~~~~---~~~~~~ 74 (264)
T d1r3da_ 16 TPLVVLVHGLLGSG-----------ADW----QPVLSHLARTQCAALT---LDLPGHGTNPERHCDNFAEA---VEMIEQ 74 (264)
T ss_dssp BCEEEEECCTTCCG-----------GGG----HHHHHHHTTSSCEEEE---ECCTTCSSCC-------CHH---HHHHHH
T ss_pred CCeEEEeCCCCCCH-----------HHH----HHHHHHHHhCCCEEEE---Eecccccccccccccccchh---hhhhhh
Confidence 68899999964211 112 2456667788999999 66678887754332211111 122222
Q ss_pred HHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCC---------------------------
Q 002194 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG--------------------------- 802 (954)
Q Consensus 750 l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~--------------------------- 802 (954)
+........+++.++|||+||.+++.++.++|+.+..++...+..........
T Consensus 75 ~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (264)
T d1r3da_ 75 TVQAHVTSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLS 154 (264)
T ss_dssp HHHTTCCTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cccccccccCceeeeeecchHHHHHHHHHhCchhccccccccccCCCccccchhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 22233345578999999999999999999999888877765432211100000
Q ss_pred -------Cccccchhhhc-------------HHHHHhc------CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHH
Q 002194 803 -------FQNEDRTLWEA-------------TSTYVEM------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (954)
Q Consensus 803 -------~~~~~~~~~~~-------------~~~~~~~------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (954)
+.......... ....... .....+..+++|+|+++|++|..+. .+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~l~i~G~~D~~~~-------~~~~ 227 (264)
T d1r3da_ 155 DWYQQAVFSSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKFQ-------QLAE 227 (264)
T ss_dssp HHTTSGGGTTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHHH-------HHHH
T ss_pred hhhhhhhhcccchHHHHHHHHHHhhhhhhhhHHhhhhccccccccchhhhhccCcceEEEEeCCcHHHH-------HHHh
Confidence 00000000000 0000000 1122345678999999999996432 1222
Q ss_pred HHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 857 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
. . ++++++++++||... .++.+.+.+.|.+||+..
T Consensus 228 ~---~--~~~~~~i~~~gH~~~-~e~P~~~~~~i~~fl~~l 262 (264)
T d1r3da_ 228 S---S--GLSYSQVAQAGHNVH-HEQPQAFAKIVQAMIHSI 262 (264)
T ss_dssp H---H--CSEEEEETTCCSCHH-HHCHHHHHHHHHHHHHHH
T ss_pred c---C--CCeEEEECCCCCchH-HHCHHHHHHHHHHHHHhc
Confidence 1 1 258889999999864 567788999999999874
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.31 E-value=5.3e-10 Score=124.14 Aligned_cols=206 Identities=9% Similarity=-0.061 Sum_probs=127.3
Q ss_pred eeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCC
Q 002194 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (954)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~ 273 (954)
+....|.+.+.++.. .+...|.++|+++++.......+.. +..++|||||++||++.
T Consensus 24 ~~~~~~~~~~~~v~~-------~d~g~v~v~D~~t~~v~~~~~~g~~-----~~~v~fSpDG~~l~~~s----------- 80 (432)
T d1qksa2 24 QMNDWDLENLFSVTL-------RDAGQIALIDGSTYEIKTVLDTGYA-----VHISRLSASGRYLFVIG----------- 80 (432)
T ss_dssp CCSCCCGGGEEEEEE-------TTTTEEEEEETTTCCEEEEEECSSC-----EEEEEECTTSCEEEEEE-----------
T ss_pred eeecCCCCcEEEEEE-------cCCCEEEEEECCCCcEEEEEeCCCC-----eeEEEECCCCCEEEEEc-----------
Confidence 445556666766553 2367899999999988666554432 66899999999998761
Q ss_pred CCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee---EcCC---C-ccccccccCCCCcE
Q 002194 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK---EIGP---P-AVYTSLDPSPDEKY 345 (954)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~---~l~~---~-~~~~~~~~SpDGk~ 345 (954)
....+.++|+ +++.. .+.. + +...++.|||||++
T Consensus 81 --------------------------------------~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~ 122 (432)
T d1qksa2 81 --------------------------------------RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122 (432)
T ss_dssp --------------------------------------TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTE
T ss_pred --------------------------------------CCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCE
Confidence 1124677787 55432 2222 2 45568899999999
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
|+.+.... +.+.+||.++++............... ..........+.+||||+.+++..
T Consensus 123 l~vs~~~~------------~~v~i~d~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~s~dg~~~~vs~-------- 181 (432)
T d1qksa2 123 AIAGAYWP------------PQYVIMDGETLEPKKIQSTRGMTYDEQ-EYHPEPRVAAILASHYRPEFIVNV-------- 181 (432)
T ss_dssp EEEEEEET------------TEEEEEETTTCCEEEEEECCEECTTTC-CEESCCCEEEEEECSSSSEEEEEE--------
T ss_pred EEEEcCCC------------CeEEEEeCccccceeeeccCCccccce-eccCCCceeEEEECCCCCEEEEEE--------
Confidence 87766432 389999999776554433221110000 001112233577889988655541
Q ss_pred cccccCCCeEEEEecCCCCCCCceEEe--ecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 426 KVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
...+.+++++. ...+...+. ........++|+|||++++.+.... ..+..++.+++
T Consensus 182 ----~~~~~i~~~d~---~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~---~~v~v~d~~~~ 239 (432)
T d1qksa2 182 ----KETGKILLVDY---TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR---NKLVVIDTKEG 239 (432)
T ss_dssp ----TTTTEEEEEET---TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG---TEEEEEETTTT
T ss_pred ----ccCCeEEEEEc---cCCCcceEEEEcccCccccceECCCCCEEEEecccc---ceEEEeecccc
Confidence 33567888885 333332322 2233456789999999988887654 35777777764
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=2.5e-10 Score=121.55 Aligned_cols=230 Identities=9% Similarity=0.011 Sum_probs=115.4
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
.....++|||||++|++..... ..+.+|+.+............ ....+..+.++||++
T Consensus 83 ~~p~~l~~spDg~~l~v~~~~~------------~~v~~~~~~~~~~~~~~~~~~----------~~~~~~~v~~s~d~~ 140 (333)
T d1ri6a_ 83 GSLTHISTDHQGQFVFVGSYNA------------GNVSVTRLEDGLPVGVVDVVE----------GLDGCHSANISPDNR 140 (333)
T ss_dssp SCCSEEEECTTSSEEEEEETTT------------TEEEEEEEETTEEEEEEEEEC----------CCTTBCCCEECTTSS
T ss_pred CCceEEEEcCCCCEEeecccCC------------CceeeeccccccceecccccC----------CCccceEEEeeecce
Confidence 3456789999999998876332 267777777554333222111 012345688999999
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe------ecccccCceeeccCCceEEEEEeccccceEEEE
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH------KLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (954)
.++.. . .....+.+++. .......... ........++|++++..++......+ ...++.
T Consensus 141 ~~~~~-~-----------~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~-~~~v~~ 205 (333)
T d1ri6a_ 141 TLWVP-A-----------LKQDRICLFTV--SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS-SVDVWE 205 (333)
T ss_dssp EEEEE-E-----------GGGTEEEEEEE--CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT-EEEEEE
T ss_pred eeecc-c-----------cccceeeEEEe--ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccC-ceEEEe
Confidence 66554 1 12335666664 1222221111 11122346899999998776654433 245666
Q ss_pred EcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeE
Q 002194 486 ISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (954)
Q Consensus 486 ~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 565 (954)
++...........................+.+++||++++...... +...++.++.+++..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 267 (333)
T d1ri6a_ 206 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA------------------SLITVFSVSEDGSVLS 267 (333)
T ss_dssp SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT------------------TEEEEEEECTTSCCEE
T ss_pred ecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccC------------------CeEEEEEEcCCCCEEE
Confidence 5554432111111111111111111111256899999877665211 1122333444443333
Q ss_pred EEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEeecC
Q 002194 566 RIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDF 627 (954)
Q Consensus 566 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~ 627 (954)
........ ..-...+|||||+++++... ....-.+|.+|..+|+.+++...
T Consensus 268 ~~~~~~~~----------~~p~~~a~spDGk~l~va~~-~~~~v~v~~id~~tG~l~~~~~~ 318 (333)
T d1ri6a_ 268 KEGFQPTE----------TQPRGFNVDHSGKYLIAAGQ-KSHHISVYEIVGEQGLLHEKGRY 318 (333)
T ss_dssp EEEEEECS----------SSCCCEEECTTSSEEEEECT-TTCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEeCCC----------CCeeEEEEeCCCCEEEEEEC-CCCeEEEEEEECCCCcEEEEEec
Confidence 22211100 01113579999998765432 22223467778888887766543
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=99.31 E-value=1.2e-13 Score=147.21 Aligned_cols=225 Identities=12% Similarity=0.047 Sum_probs=125.9
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCccc
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA 731 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~ 731 (954)
+.+..+.|.+ +.+.| ||++||++.....+..+.. . ...++..++++||.|++ .|.+|+|++..
T Consensus 46 ~~v~~~~p~~-----~~~~P-vvllHG~~~~~~~w~~~~~----~----~~~~~~~~~~~Gy~V~~---~D~~G~G~S~~ 108 (318)
T d1qlwa_ 46 MYVRYQIPQR-----AKRYP-ITLIHGCCLTGMTWETTPD----G----RMGWDEYFLRKGYSTYV---IDQSGRGRSAT 108 (318)
T ss_dssp EEEEEEEETT-----CCSSC-EEEECCTTCCGGGGSSCTT----S----CCCHHHHHHHTTCCEEE---EECTTSTTSCC
T ss_pred EEEEEECCCC-----CCCCc-EEEECCCCCCcCccccCcc----c----chhHHHHHHhCCCEEEE---ecCCCCCCCCC
Confidence 4455566753 22477 5568998755433221111 1 12467889999999999 55567777643
Q ss_pred chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCccc-EEEEeccCCCCC--CCCCCC-----
Q 002194 732 NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC-CGIARSGAYNRT--LTPFGF----- 803 (954)
Q Consensus 732 ~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~-a~v~~~~~~~~~--~~~~~~----- 803 (954)
.... ....+....+..+.+.-.....++++.|||+||.++..++...+.... ..+..++..... ......
T Consensus 109 ~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~g~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (318)
T d1qlwa_ 109 DISA--INAVKLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANL 186 (318)
T ss_dssp CCHH--HHHHHTTSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHH
T ss_pred cccc--CCHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhhcCccccceeeEeccccccccchhhhhhhHHHH
Confidence 3211 111111111111111111233567888999999888777665433211 111111111000 000000
Q ss_pred ---------------ccccchhhhcH----H---------HHHhcCcccccCCCCCCEEEEEeCCCCCCCCchH-----H
Q 002194 804 ---------------QNEDRTLWEAT----S---------TYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTM-----Q 850 (954)
Q Consensus 804 ---------------~~~~~~~~~~~----~---------~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~-----~ 850 (954)
.......|... + .+....+......+++|+|++||++|.++| .. .
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Lii~G~~D~~~p--~~~~~~~~ 264 (318)
T d1qlwa_ 187 SKLAIKLDGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVKPLTSIPVLVVFGDHIEEFP--RWAPRLKA 264 (318)
T ss_dssp HHHHHHHTSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCCCCGGGCGGGTTSCEEEEECSSCTTCT--TTHHHHHH
T ss_pred HHHHhhhccccchhhhcccchhhhhhhhhhhHHHHHHhhhcccccchhhhhhhccCCEEEEecCcCcccC--hhhhHHHH
Confidence 00000000000 0 001123445566778999999999999987 43 4
Q ss_pred HHHHHHHHHhCCCcEEEEEeC-----CCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 851 SDRFFNALKGHGALCRLVILP-----FESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~~-----~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
+..++++++..|.+++++.+| |++|......+.+++.+.|.+||+++
T Consensus 265 ~~~~~~~l~~~g~~~~~~~lp~~gi~G~gH~~~~e~~~~~va~~i~~wL~~~ 316 (318)
T d1qlwa_ 265 CHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRN 316 (318)
T ss_dssp HHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcEEEEecccccCCCcCccccCcCHHHHHHHHHHHHHhc
Confidence 567888899999999999977 45699765666789999999999987
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.27 E-value=3.4e-10 Score=122.93 Aligned_cols=315 Identities=6% Similarity=-0.102 Sum_probs=167.6
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCC
Q 002194 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (954)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (954)
...+.+|||+..+... ....++..+||++|.++++....+.... ...++|+|||+.|+++.......
T Consensus 23 ~~~a~~~~~~~~~v~~----~~~~~g~~~~~~~d~~~~~~~~~~~~~~------~~~~a~spDg~~i~~~~~~~~~~--- 89 (368)
T d1mdah_ 23 CDHGPGAISRRSHITL----PAYFAGTTENWVSCAGCGVTLGHSLGAF------LSLAVAGHSGSDFALASTSFARS--- 89 (368)
T ss_dssp BCCCCCCCTTEEEEEE----CTTTCSSEEEEEEETTTTEEEEEEEECT------TCEEEECTTSSCEEEEEEEETTT---
T ss_pred cccccCCCCcceeEEe----eccCCCcceEEEEeCCCCcEEEEEeCCC------CCcceECCCCCEEEEEcccCccc---
Confidence 3345577888654432 2235678899999999998877665443 23689999999999872110000
Q ss_pred CCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE-cC--C------CccccccccCC
Q 002194 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IG--P------PAVYTSLDPSP 341 (954)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~-l~--~------~~~~~~~~~Sp 341 (954)
..-. ....|.++|. +++... +. . ......++|||
T Consensus 90 ---------------------------~~g~---------~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp 133 (368)
T d1mdah_ 90 ---------------------------AKGK---------RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA 133 (368)
T ss_dssp ---------------------------TSSS---------EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred ---------------------------cccc---------cCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC
Confidence 0000 2345778887 665332 21 1 12234688999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
|||+|++.... .+.+.+||+.+++.......+....+ ........+++++||+.+++... +
T Consensus 134 DGk~l~va~~~------------~~~v~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~Dg~~~~~~~~--~ 194 (368)
T d1mdah_ 134 SSACLLFFLFG------------SSAAAGLSVPGASDDQLTKSASCFHI-----HPGAAATHYLGSCPASLAASDLA--A 194 (368)
T ss_dssp TSSCEEEEECS------------SSCEEEEEETTTEEEEEEECSSCCCC-----EEEETTEEECCCCTTSCEEEECC--S
T ss_pred CCCEEEEEeCC------------CCeEEEEECCCCcEeEEeeccCcceE-----ccCCCceEEEEcCCCCEEEEEec--C
Confidence 99999987633 23899999997765443332221100 00112234667777764433311 0
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecC
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 501 (954)
.....+.... . .....+.......+.++|..++.. + .+++.++...+ ....+...
T Consensus 195 ---------~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~g~~~~~~----~--~~v~~~~~~~~--~~~~~~~~ 249 (368)
T d1mdah_ 195 ---------APAAAGIVGA---Q-----CTGAQNCSSQAAQANYPGMLVWAV----A--SSILQGDIPAA--GATMKAAI 249 (368)
T ss_dssp ---------SCCCCEECCC---C-----SCTTSCBCSCCEEETTTTEEEECB----S--SCCEEEECCSS--CCEEECCC
T ss_pred ---------Cceeeeeeec---c-----cccccccceeecccccCcEEEEec----C--CCEEEEeecCC--ceEEEeec
Confidence 0111111110 0 001112233456677776544321 1 23666666553 22222111
Q ss_pred CCCCc------cCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccc
Q 002194 502 SSEDV------YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKY 575 (954)
Q Consensus 502 ~~~~~------~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 575 (954)
..... ....+...++++++++.++....... ........+|++||.++++..........
T Consensus 250 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~------------~~~~~~~~~v~v~D~~t~~~~~~~~~~~~-- 315 (368)
T d1mdah_ 250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS------------RSCLAAAENTSSVTASVGQTSGPISNGHD-- 315 (368)
T ss_dssp CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECS------------SCTTSCEEEEEEEESSSCCEEECCEEEEE--
T ss_pred ccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCC------------ceeecCCceEEEEECCCCcEeEEecCCCc--
Confidence 11000 00012223678888887766543211 11112235699999999975443322211
Q ss_pred cceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEee
Q 002194 576 YETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQIT 625 (954)
Q Consensus 576 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt 625 (954)
.. ..+|||||+.++|...... ..|+++|..+|+.....
T Consensus 316 ---~~-------~~a~spDG~~~ly~s~~~~--~~v~v~D~~tgk~~~~i 353 (368)
T d1mdah_ 316 ---SD-------AIIAAQDGASDNYANSAGT--EVLDIYDAASDQDQSSV 353 (368)
T ss_dssp ---EC-------EEEECCSSSCEEEEEETTT--TEEEEEESSSCEEEEEC
T ss_pred ---ee-------EEEECCCCCEEEEEEeCCC--CeEEEEECCCCCEEEEE
Confidence 11 2579999987776665433 57999999998765543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.26 E-value=1.2e-09 Score=116.41 Aligned_cols=250 Identities=14% Similarity=0.066 Sum_probs=139.8
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccC-CCCCCceeeeecCCCCC
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP-DGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-~g~~~~~~~lt~~~~~~ 189 (954)
+..++|+|+|+.||+...+ .+.++.+.. +........++++. ..
T Consensus 20 ~t~l~~~~~~~~la~~~~~----------------------------------~~~i~~~~~~~~~~~~~~~~~gh~-~~ 64 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPCGK----------------------------------SAFVRCLDDGDSKVPPVVQFTGHG-SS 64 (325)
T ss_dssp CCCCEEETTTTEEEEEETT----------------------------------EEEEEECCSSCCSSCSEEEECTTT-TS
T ss_pred eEEEEECCCCCEEEEEeCC----------------------------------CEEEEEEeCCCCCccceEEEeCCC-CC
Confidence 4578999999999998764 333444421 11111222333221 23
Q ss_pred cccceeecC--CCCeEEEEEeeccccCCCCceEEEEEECCCCce-eecccC---CCccccccccceeEecCCeEEEEEec
Q 002194 190 KLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLFQS---PDIYLNAIFDNFVWVNNSTLLVCTIP 263 (954)
Q Consensus 190 ~~~~~~wSP--DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~---~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (954)
.+..++||| ||+.|+... .++...||-+. .++. ..+... ........+..+.|++||+.|+....
T Consensus 65 ~v~~v~fsP~~~g~~lasgs-------~Dg~i~iWd~~--~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 135 (325)
T d1pgua1 65 VVTTVKFSPIKGSQYLCSGD-------ESGKVIVWGWT--FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135 (325)
T ss_dssp CEEEEEECSSTTCCEEEEEE-------TTSEEEEEEEE--EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred CEEEEEEeeCCCCCEEEEEe-------CCCCEEEeeec--CCcceeeeecccccccccccCcEEEEEECCCCCccceeec
Confidence 688899998 566666543 34555555443 2221 111000 00001122668999999999987621
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-ccccccccC
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPS 340 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~-~~~~~~~~S 340 (954)
. ....+..++. +|+ ...+... ..+.+++|+
T Consensus 136 ~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 168 (325)
T d1pgua1 136 G-----------------------------------------------RDNFGVFISWDSGNSLGEVSGHSQRINACHLK 168 (325)
T ss_dssp C-----------------------------------------------SSCSEEEEETTTCCEEEECCSCSSCEEEEEEC
T ss_pred c-----------------------------------------------ccceEEEEeecccccceeeeeccccccccccc
Confidence 1 0112334444 453 3444433 677889999
Q ss_pred CCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 341 pDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
|+++.++.+...+ +.+.+|+....+. ..+.... .....+..++|+||+..+++..
T Consensus 169 ~~~~~~~~~~~~d------------~~v~~~d~~~~~~~~~~~~~~----------~~~~~v~~v~~~pd~~~~l~s~-- 224 (325)
T d1pgua1 169 QSRPMRSMTVGDD------------GSVVFYQGPPFKFSASDRTHH----------KQGSFVRDVEFSPDSGEFVITV-- 224 (325)
T ss_dssp SSSSCEEEEEETT------------TEEEEEETTTBEEEEEECSSS----------CTTCCEEEEEECSTTCCEEEEE--
T ss_pred ccccceEEEeecc------------cccccccccccccceeccccc----------CCCCccEEeeeccccceecccc--
Confidence 9999876655332 3788999875443 2222221 1113356789999876554431
Q ss_pred ccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeec---cCCceEEEEEeccccceEEEEEcCCCC
Q 002194 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWC---DDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~s---pDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
...+.|.+|+. .++.....+..+...+..+.|+ |||++|+..+.++. |.++|+.++
T Consensus 225 ----------~~d~~i~iwd~--~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~----i~iwd~~~~ 283 (325)
T d1pgua1 225 ----------GSDRKISCFDG--KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT----IRVWDVTTS 283 (325)
T ss_dssp ----------ETTCCEEEEET--TTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE----EEEEETTTT
T ss_pred ----------ccccceeeeee--ccccccccccccccccccceeeeeccCCCEEEEEeCCCe----EEEEECCCC
Confidence 23457888986 2333334555555566667776 79999888764432 444566654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.22 E-value=1.8e-10 Score=125.75 Aligned_cols=244 Identities=12% Similarity=0.100 Sum_probs=144.5
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCcee-eeecCCCCC
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI-EIQGFPDGA 189 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~-~lt~~~~~~ 189 (954)
+..++|||||++|+..+.+ +.|.+|+... ++.. .+.+ +..
T Consensus 124 V~~l~~s~~~~~l~s~~~d---------------------------------g~v~i~~~~~----~~~~~~~~~--h~~ 164 (388)
T d1erja_ 124 IRSVCFSPDGKFLATGAED---------------------------------RLIRIWDIEN----RKIVMILQG--HEQ 164 (388)
T ss_dssp EEEEEECTTSSEEEEEETT---------------------------------SCEEEEETTT----TEEEEEECC--CSS
T ss_pred EEEEEECCCCCcceecccc---------------------------------cccccccccc----ccccccccc--ccc
Confidence 5568999999999988775 4789999853 3322 2221 223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEe-cCCeEEEEEecCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV-NNSTLLVCTIPLLRGD 268 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~ws-pDG~~l~~~~~~~~~~ 268 (954)
.+....|++++..++... ....+.+++..+............ .....|+ +||+.|+...
T Consensus 165 ~v~~~~~~~~~~~~~~~~---------~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~------ 224 (388)
T d1erja_ 165 DIYSLDYFPSGDKLVSGS---------GDRTVRIWDLRTGQCSLTLSIEDG-----VTTVAVSPGDGKYIAAGS------ 224 (388)
T ss_dssp CEEEEEECTTSSEEEEEE---------TTSEEEEEETTTTEEEEEEECSSC-----EEEEEECSTTCCEEEEEE------
T ss_pred cccccccccccccccccc---------cceeeeeeeccccccccccccccc-----cccccccCCCCCeEEEEc------
Confidence 678899999999988755 255788888887665544333332 2234444 6788887651
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcC-------CC-ccccccc
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIG-------PP-AVYTSLD 338 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~-------~~-~~~~~~~ 338 (954)
....|.+++. ++.. ..+. .. ..+..++
T Consensus 225 -------------------------------------------~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 261 (388)
T d1erja_ 225 -------------------------------------------LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 261 (388)
T ss_dssp -------------------------------------------TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred -------------------------------------------CCCeEEEeecccCccceeeccccccccCCCCCEEEEE
Confidence 1123555565 4422 2221 11 4567889
Q ss_pred cCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002194 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (954)
Q Consensus 339 ~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~ 418 (954)
|+|||++|+..+.+ +.+.+||+...........+...............+..++|+|||+.|+..
T Consensus 262 ~s~~~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg-- 326 (388)
T d1erja_ 262 FTRDGQSVVSGSLD-------------RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG-- 326 (388)
T ss_dssp ECTTSSEEEEEETT-------------SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEE--
T ss_pred ECCCCCEEEEEECC-------------CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEE--
Confidence 99999999887743 389999987543322111111100000111222345679999999876654
Q ss_pred eccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCc------eeeccCCceEEEEEeccccceEEEEE
Q 002194 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG------ISWCDDSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~------~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (954)
+..+.|++|++ .++.....+..+...+.. ..|+|||+.|+.++.++. .+||.+
T Consensus 327 -----------~~dg~i~vwd~--~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~--I~iW~~ 385 (388)
T d1erja_ 327 -----------SKDRGVLFWDK--KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK--ARIWKY 385 (388)
T ss_dssp -----------ETTSEEEEEET--TTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE--EEEEEE
T ss_pred -----------eCCCEEEEEEC--CCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCE--EEEEee
Confidence 34568999996 334334555555554443 457899999888765433 677765
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.22 E-value=9.3e-10 Score=116.92 Aligned_cols=257 Identities=12% Similarity=-0.016 Sum_probs=141.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCce-eeeecCCC-
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE-IEIQGFPD- 187 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~-~~lt~~~~- 187 (954)
.+.+++|||||++|+.+... . +.|++||+.+ ++. ..+.....
T Consensus 35 ~~~~i~~spDg~~l~v~~~~----------------------~----------~~v~v~D~~t----~~~~~~~~~~~~~ 78 (337)
T d1pbyb_ 35 TPMVPMVAPGGRIAYATVNK----------------------S----------ESLVKIDLVT----GETLGRIDLSTPE 78 (337)
T ss_dssp CCCCEEECTTSSEEEEEETT----------------------T----------TEEEEEETTT----CCEEEEEECCBTT
T ss_pred CccEEEECCCCCEEEEEECC----------------------C----------CeEEEEECCC----CcEEEEEecCCCc
Confidence 45689999999998665432 0 3689999864 332 22221111
Q ss_pred --CCcccceeecCCCCeEEEEEeecc---ccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEe
Q 002194 188 --GAKLNFVTWSQDGKHLAFSIRIDA---EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (954)
Q Consensus 188 --~~~~~~~~wSPDG~~iaf~~~~~~---~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (954)
+......+|||||+.++....... .........+.++|..+++.......... +..++|+|||++++...
T Consensus 79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-----ITMLAWARDGSKLYGLG 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-----CCCEEECTTSSCEEEES
T ss_pred ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCC-----ceEEEEcCCCCEEEEEc
Confidence 114567899999999988765321 01112346788889888877655544432 56889999999998761
Q ss_pred cCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE-cCCCccccccccC
Q 002194 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPPAVYTSLDPS 340 (954)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~-l~~~~~~~~~~~S 340 (954)
..+..++. +++... +..........++
T Consensus 154 ---------------------------------------------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 182 (337)
T d1pbyb_ 154 ---------------------------------------------------RDLHVMDPEAGTLVEDKPIQSWEAETYAQ 182 (337)
T ss_dssp ---------------------------------------------------SSEEEEETTTTEEEEEECSTTTTTTTBCC
T ss_pred ---------------------------------------------------CCcceeeeecCcEEEEeecCCccccceec
Confidence 11334455 443222 2211222334445
Q ss_pred CCCcEEEEEeec-----------CCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccC
Q 002194 341 PDEKYILISSIH-----------RPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (954)
Q Consensus 341 pDGk~l~~~s~~-----------~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD 409 (954)
|++..+...... ...............+.+++...+........+ .........++|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 251 (337)
T d1pbyb_ 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI-----------MDVFYFSTAVNPA 251 (337)
T ss_dssp CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE-----------CSSCEEEEEECTT
T ss_pred CCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC-----------CCcceEEEEeccc
Confidence 555433211100 000000000111224667776654433222111 1122345677888
Q ss_pred CCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCC
Q 002194 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (954)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~ 489 (954)
++.++.. .+.+.+|++ ..++..........+..++|||||++|+... .+ ..|.++|+.
T Consensus 252 ~~~~~~~---------------~~~i~v~d~---~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~-~~---~~i~v~D~~ 309 (337)
T d1pbyb_ 252 KTRAFGA---------------YNVLESFDL---EKNASIKRVPLPHSYYSVNVSTDGSTVWLGG-AL---GDLAAYDAE 309 (337)
T ss_dssp SSEEEEE---------------ESEEEEEET---TTTEEEEEEECSSCCCEEEECTTSCEEEEES-BS---SEEEEEETT
T ss_pred ceEEEEc---------------cccEEEEEC---CCCcEEEEEcCCCCEEEEEECCCCCEEEEEe-CC---CcEEEEECC
Confidence 8754332 347888996 4444333334455678899999999987753 33 348888888
Q ss_pred CC
Q 002194 490 SK 491 (954)
Q Consensus 490 ~~ 491 (954)
+.
T Consensus 310 t~ 311 (337)
T d1pbyb_ 310 TL 311 (337)
T ss_dssp TC
T ss_pred CC
Confidence 75
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.20 E-value=8.6e-11 Score=122.61 Aligned_cols=211 Identities=10% Similarity=-0.030 Sum_probs=120.1
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+|+.... + + .|.||++||.+.... .|.. .+.. ++++|.|++ .|..|+
T Consensus 15 ~~g~~i~y~~~---G-----~--g~~vvllHG~~~~~~-----------~~~~----~~~~-L~~~~~vi~---~Dl~G~ 65 (298)
T d1mj5a_ 15 IKGRRMAYIDE---G-----T--GDPILFQHGNPTSSY-----------LWRN----IMPH-CAGLGRLIA---CDLIGM 65 (298)
T ss_dssp ETTEEEEEEEE---S-----C--SSEEEEECCTTCCGG-----------GGTT----TGGG-GTTSSEEEE---ECCTTS
T ss_pred ECCEEEEEEEE---c-----C--CCcEEEECCCCCCHH-----------HHHH----HHHH-HhcCCEEEE---EeCCCC
Confidence 47888885543 1 2 367889999753221 1211 1223 346799999 566677
Q ss_pred CCcccchh--hHHHHHHHHH-HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC-CC
Q 002194 727 GDEEANDR--FVEQLVACAE-AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-FG 802 (954)
Q Consensus 727 G~~~~~~~--~~~~~~~D~~-~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-~~ 802 (954)
|.+..... .......+.. ..+..+.+.. ..+++.++|||+||.+++.++.++|+++++++...+........ +.
T Consensus 66 G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~~~~~~~~~~~ 143 (298)
T d1mj5a_ 66 GDSDKLDPSGPERYAYAEHRDYLDALWEALD--LGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFP 143 (298)
T ss_dssp TTSCCCSSCSTTSSCHHHHHHHHHHHHHHTT--CTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCGGGSC
T ss_pred CCCCCCccccccccccchhhhhhcccccccc--ccccCeEEEecccchhHHHHHHHHHhhhheeeccccccccccchhhh
Confidence 77754211 1111112222 2222333332 34589999999999999999999999999999887643211100 00
Q ss_pred Ccc---------------------------------c-cchhh-----------hcHHHHH------------------h
Q 002194 803 FQN---------------------------------E-DRTLW-----------EATSTYV------------------E 819 (954)
Q Consensus 803 ~~~---------------------------------~-~~~~~-----------~~~~~~~------------------~ 819 (954)
... . ....+ ....... .
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (298)
T d1mj5a_ 144 EQDRDLFQAFRSQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIA 223 (298)
T ss_dssp GGGHHHHHHHHSTTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhhhhhhhhhccchhhhhhhhhhhhhhhhcchhhhhhhhh
Confidence 000 0 00000 0000000 0
Q ss_pred cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 820 ~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
......+.++++|+|+++|++|..++ ....++.+. -...++++. ++||... .+..+++.+.|.+||++.
T Consensus 224 ~~~~~~~~~~~~P~l~i~g~~d~~~~---~~~~~~~~~----~p~~~~~~~-~~GH~~~-~e~P~~v~~~i~~fl~~~ 292 (298)
T d1mj5a_ 224 RDYAGWLSESPIPKLFINAEPGALTT---GRMRDFCRT----WPNQTEITV-AGAHFIQ-EDSPDEIGAAIAAFVRRL 292 (298)
T ss_dssp HHHHHHHTTCCSCEEEEEEEECSSSS---HHHHHHHTT----CSSEEEEEE-EESSCGG-GTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcceeEEEEecCCCCcCh---HHHHHHHHH----CCCCEEEEe-CCCCchH-HhCHHHHHHHHHHHHhhh
Confidence 00112345678999999999998754 444444332 233566555 5699864 667889999999999885
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.16 E-value=6.6e-09 Score=110.16 Aligned_cols=134 Identities=8% Similarity=0.036 Sum_probs=78.7
Q ss_pred CCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCC--CCCccCC
Q 002194 432 RDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS--SEDVYSD 509 (954)
Q Consensus 432 ~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~--~~~~~~~ 509 (954)
.+.+.+|++ .++.....+..+...+..++|+|+|+.|+..+.+.. +..++.... ......... ...+..
T Consensus 205 d~~v~i~d~--~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~----i~~~~~~~~--~~~~~~~~~~~~~~i~~- 275 (340)
T d1tbga_ 205 DASAKLWDV--REGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT----CRLFDLRAD--QELMTYSHDNIICGITS- 275 (340)
T ss_dssp TTEEEEEET--TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC----EEEEETTTT--EEEEEECCTTCCSCEEE-
T ss_pred CceEEEEEC--CCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCe----EEEEeeccc--ccccccccccccCceEE-
Confidence 457888886 233333445556667788999999999888765432 445555543 222222111 111122
Q ss_pred CCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccc
Q 002194 510 PGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEG 589 (954)
Q Consensus 510 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 589 (954)
+.|+|+|++|+.... ...|++||+.+++.......... .+.. .
T Consensus 276 -----~~~s~~~~~l~~g~~---------------------dg~i~iwd~~~~~~~~~~~~H~~----~V~~-------l 318 (340)
T d1tbga_ 276 -----VSFSKSGRLLLAGYD---------------------DFNCNVWDALKADRAGVLAGHDN----RVSC-------L 318 (340)
T ss_dssp -----EEECSSSCEEEEEET---------------------TSCEEEEETTTCCEEEEECCCSS----CEEE-------E
T ss_pred -----EEECCCCCEEEEEEC---------------------CCEEEEEECCCCcEEEEEcCCCC----CEEE-------E
Confidence 789999998887652 22499999998876655443211 1222 4
Q ss_pred cccccCCEEEEEEecCCCCceEEEEE
Q 002194 590 DLYLNQLKILTSKESKTENTQYYIQS 615 (954)
Q Consensus 590 ~~s~dg~~l~~~~~s~~~p~~l~~~~ 615 (954)
+|+||++.++. .+. -..+++||
T Consensus 319 ~~s~d~~~l~s-~s~---Dg~v~iWd 340 (340)
T d1tbga_ 319 GVTDDGMAVAT-GSW---DSFLKIWN 340 (340)
T ss_dssp EECTTSSCEEE-EET---TSCEEEEC
T ss_pred EEeCCCCEEEE-Ecc---CCEEEEeC
Confidence 68999987653 322 13466653
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.10 E-value=3.4e-08 Score=104.72 Aligned_cols=167 Identities=9% Similarity=-0.022 Sum_probs=97.3
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
+.+..++|+|||++|+..+.... ..+.+|+.+.+ ....+..+. ..+..++|+|++
T Consensus 116 ~~v~~v~~s~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~h~-------------~~v~~~~~~~~~ 171 (325)
T d1pgua1 116 GPISDISWDFEGRRLCVVGEGRD-----------NFGVFISWDSGNSLGEVSGHS-------------QRINACHLKQSR 171 (325)
T ss_dssp SCEEEEEECTTSSEEEEEECCSS-----------CSEEEEETTTCCEEEECCSCS-------------SCEEEEEECSSS
T ss_pred CcEEEEEECCCCCccceeecccc-----------ceEEEEeecccccceeeeecc-------------cccccccccccc
Confidence 56778999999999998874431 25667777643 334433221 344678999999
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEe---ecccccCceeeccCCceEEEEEeccccceEEEEE
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILH---KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (954)
+.++... +..+.+.+|+. ...+. ..+. .....+..++|+||+..++++...++ .|.++
T Consensus 172 ~~~~~~~------------~~d~~v~~~d~---~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~---~i~iw 233 (325)
T d1pgua1 172 PMRSMTV------------GDDGSVVFYQG---PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR---KISCF 233 (325)
T ss_dssp SCEEEEE------------ETTTEEEEEET---TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC---CEEEE
T ss_pred cceEEEe------------ecccccccccc---cccccceecccccCCCCccEEeeeccccceecccccccc---ceeee
Confidence 8765541 23457778885 22221 2221 22334567899998655444444433 24455
Q ss_pred cCCCCCCCcEEEecCCCCCccCCCCCCCeeec---cCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCC
Q 002194 487 SPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT---STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (954)
Q Consensus 487 d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s---pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 563 (954)
|..++ +.......+...+.+ +.|+ |||++|+.... ...|++||+.+++
T Consensus 234 d~~~~--~~~~~l~~~~~~v~~------~~~s~~~~dg~~l~s~s~---------------------D~~i~iwd~~~~~ 284 (325)
T d1pgua1 234 DGKSG--EFLKYIEDDQEPVQG------GIFALSWLDSQKFATVGA---------------------DATIRVWDVTTSK 284 (325)
T ss_dssp ETTTC--CEEEECCBTTBCCCS------CEEEEEESSSSEEEEEET---------------------TSEEEEEETTTTE
T ss_pred eeccc--ccccccccccccccc------ceeeeeccCCCEEEEEeC---------------------CCeEEEEECCCCC
Confidence 66664 333333333222222 3455 78888876651 2349999999887
Q ss_pred eEEEec
Q 002194 564 KERIWE 569 (954)
Q Consensus 564 ~~~l~~ 569 (954)
..+.+.
T Consensus 285 ~~~~~~ 290 (325)
T d1pgua1 285 CVQKWT 290 (325)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 655444
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=99.05 E-value=7.9e-10 Score=121.13 Aligned_cols=117 Identities=9% Similarity=-0.078 Sum_probs=78.6
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC------cEEEEcCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG------FAILGGPT 720 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G------~~V~~~~~ 720 (954)
.+|.+||..-....+ ...|.||++||.|.... .| ...+..|++.| |.|++
T Consensus 89 i~G~~iHf~h~~~~~------~~~~pLlLlHG~P~s~~-----------~w----~~vi~~La~~g~~~~~~f~VIa--- 144 (394)
T d1qo7a_ 89 IEGLTIHFAALFSER------EDAVPIALLHGWPGSFV-----------EF----YPILQLFREEYTPETLPFHLVV--- 144 (394)
T ss_dssp ETTEEEEEEEECCSC------TTCEEEEEECCSSCCGG-----------GG----HHHHHHHHHHCCTTTCCEEEEE---
T ss_pred ECCEEEEEEEEeccC------CCCCEEEEeccccccHH-----------HH----HHHHHhhccccCCcccceeeec---
Confidence 389999976554322 12677888999863211 11 24566788887 99999
Q ss_pred CCCCCCCCcccchh---h-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 721 TPIIGEGDEEANDR---F-VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 721 ~~~~G~G~~~~~~~---~-~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
.+..|+|.|..+.. + ......|+.. |.+.- ..++..++|||+||.++..+++.+|+.+.+++.....
T Consensus 145 PDLpG~G~S~~P~~~~~y~~~~~a~~~~~----l~~~l--g~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~~ 215 (394)
T d1qo7a_ 145 PSLPGYTFSSGPPLDKDFGLMDNARVVDQ----LMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLCA 215 (394)
T ss_dssp ECCTTSTTSCCCCSSSCCCHHHHHHHHHH----HHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred ccccccCCCCCCCCCCccCHHHHHHHHHH----HHhhc--cCcceEEEEecCchhHHHHHHHHhhccccceeEeeec
Confidence 66678888865421 2 3333444333 33331 2357899999999999999999999988888776543
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=2e-09 Score=110.04 Aligned_cols=81 Identities=14% Similarity=-0.004 Sum_probs=57.7
Q ss_pred HHHHHHHC--CcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC
Q 002194 704 SVLLWLAR--GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP 781 (954)
Q Consensus 704 ~~~~la~~--G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p 781 (954)
....|.+. ||.|++ .|..|+|.+..+..+ .++++...+..+.+. .. +++.++||||||.+|+.+|.++|
T Consensus 21 ~~~~l~~~~~~~~v~~---~d~~G~g~S~~~~~~---~~~~~~~~l~~~l~~--l~-~~~~lvGhS~GG~ia~~~a~~~p 91 (268)
T d1pjaa_ 21 LLEYINETHPGTVVTV---LDLFDGRESLRPLWE---QVQGFREAVVPIMAK--AP-QGVHLICYSQGGLVCRALLSVMD 91 (268)
T ss_dssp HHHHHHHHSTTCCEEE---CCSSCSGGGGSCHHH---HHHHHHHHHHHHHHH--CT-TCEEEEEETHHHHHHHHHHHHCT
T ss_pred HHHHHHhhCCCeEEEE---eCCCCCCCCCCcccc---CHHHHHHHHHHHHhc--cC-CeEEEEccccHHHHHHHHHHHCC
Confidence 45566664 899999 777889988655322 223333333333333 23 68999999999999999999999
Q ss_pred C-cccEEEEeccC
Q 002194 782 H-LFCCGIARSGA 793 (954)
Q Consensus 782 ~-~~~a~v~~~~~ 793 (954)
+ +++.+|++++.
T Consensus 92 ~~~v~~lvl~~~~ 104 (268)
T d1pjaa_ 92 DHNVDSFISLSSP 104 (268)
T ss_dssp TCCEEEEEEESCC
T ss_pred ccccceEEEECCC
Confidence 8 69999988763
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=98.97 E-value=1.2e-09 Score=104.86 Aligned_cols=153 Identities=15% Similarity=-0.003 Sum_probs=95.3
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC--
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-- 780 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-- 780 (954)
.....|+++||.|+..+ ..|++.+.... ....+++.+.++.+.++. ..+++.++||||||.++..++.++
T Consensus 20 ~l~~~l~~~g~~~~~~~---~~~~~~~~~~~---~~~~~~l~~~i~~~~~~~--~~~~v~lvGHSmGG~va~~~~~~~~~ 91 (179)
T d1ispa_ 20 GIKSYLVSQGWSRDKLY---AVDFWDKTGTN---YNNGPVLSRFVQKVLDET--GAKKVDIVAHSMGGANTLYYIKNLDG 91 (179)
T ss_dssp HHHHHHHHTTCCGGGEE---ECCCSCTTCCH---HHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHSSG
T ss_pred HHHHHHHHcCCeEEEEe---cCCcccccccc---chhhhhHHHHHHHHHHhc--CCceEEEEeecCcCHHHHHHHHHcCC
Confidence 45677899999877632 23444332222 223444555555555542 346899999999999999999876
Q ss_pred CCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHh
Q 002194 781 PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (954)
Q Consensus 781 p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~ 860 (954)
|++++.+|++++........ .. .........|++.++|..|.+|+ +..+ ++
T Consensus 92 ~~~V~~~V~l~~p~~g~~~~-~l-------------------~~~~~~~~~~~~~i~~~~D~~v~--~~~~-----~l-- 142 (179)
T d1ispa_ 92 GNKVANVVTLGGANRLTTGK-AL-------------------PGTDPNQKILYTSIYSSADMIVM--NYLS-----RL-- 142 (179)
T ss_dssp GGTEEEEEEESCCGGGTCSB-CC-------------------CCSCTTCCCEEEEEEETTCSSSC--HHHH-----CC--
T ss_pred chhhCEEEEECCCCCCchhh-hc-------------------CCcccccCceEEEEEecCCcccC--chhh-----cC--
Confidence 57899999998753211100 00 00011235789999999999997 6543 12
Q ss_pred CCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 861 HGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 861 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.+ .+.+.+++.+|... ..+ ..+++.+.+||+.
T Consensus 143 ~~--~~~~~~~~~~H~~l-~~~-~~v~~~i~~~L~~ 174 (179)
T d1ispa_ 143 DG--ARNVQIHGVGHIGL-LYS-SQVNSLIKEGLNG 174 (179)
T ss_dssp BT--SEEEEESSCCTGGG-GGC-HHHHHHHHHHHTT
T ss_pred CC--ceEEEECCCCchhh-ccC-HHHHHHHHHHHhc
Confidence 12 35667899999743 222 3566677777653
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.90 E-value=2e-07 Score=100.28 Aligned_cols=84 Identities=11% Similarity=-0.014 Sum_probs=47.9
Q ss_pred ceEEEEccCCCCCCceeeee--cCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQ--GFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt--~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
.|++..+..+. +....+. ..+.....+..++||||+.|+-+.. +....|.++.+++.....+......
T Consensus 15 ~i~~~~fd~~~--~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~--------~~~~~~~i~~~~~~~~~~~~~~~~~ 84 (365)
T d1jofa_ 15 AIFTVQFDDEK--LTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM--------KKWSSFAVKSPTEIVHEASHPIGGH 84 (365)
T ss_dssp EEEEEEEETTT--TEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB--------TEEEEEEEEETTEEEEEEEEECCSS
T ss_pred CEEEEEEcCCC--CeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC--------CcEEEEEEeCCCCeEEEeeecCCCC
Confidence 57776664322 3322221 1233334677899999988766532 3567788887665443332211111
Q ss_pred ccccccceeEecCCeEEEEE
Q 002194 242 LNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~ 261 (954)
...+..++||+.++++
T Consensus 85 ----p~~v~~~~~~~~~~v~ 100 (365)
T d1jofa_ 85 ----PRANDADTNTRAIFLL 100 (365)
T ss_dssp ----GGGGCTTSCCEEEEEE
T ss_pred ----cEEEEECCCCCEEEEE
Confidence 3467788999987765
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=1.9e-06 Score=90.19 Aligned_cols=179 Identities=12% Similarity=0.017 Sum_probs=92.2
Q ss_pred ceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCC
Q 002194 367 QVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG 445 (954)
Q Consensus 367 ~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 445 (954)
.+.+|+...... ..+..+. .....+++|++.++.. +..+.|.+|++ ..
T Consensus 158 ~i~~~d~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~s~-------------~~dg~i~~~d~---~~ 206 (342)
T d2ovrb2 158 MVKVWDPETETCLHTLQGHT---------------NRVYSLQFDGIHVVSG-------------SLDTSIRVWDV---ET 206 (342)
T ss_dssp CEEEEEGGGTEEEEEECCCS---------------SCEEEEEECSSEEEEE-------------ETTSCEEEEET---TT
T ss_pred eEEEeecccceeeEEEcCcc---------------cccccccCCCCEEEEE-------------eCCCeEEEeec---cc
Confidence 788999875443 3332211 1235577788765544 33557889986 33
Q ss_pred CCc-eEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEE
Q 002194 446 EGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYV 524 (954)
Q Consensus 446 ~~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l 524 (954)
++. ..+..+...+. +++++++.|+..+.++ .|.+++.... +........... ......++++++++
T Consensus 207 ~~~~~~~~~~~~~v~--~~~~~~~~l~s~s~d~----~i~iwd~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 273 (342)
T d2ovrb2 207 GNCIHTLTGHQSLTS--GMELKDNILVSGNADS----TVKIWDIKTG--QCLQTLQGPNKH-----QSAVTCLQFNKNFV 273 (342)
T ss_dssp CCEEEEECCCCSCEE--EEEEETTEEEEEETTS----CEEEEETTTC--CEEEEECSTTSC-----SSCEEEEEECSSEE
T ss_pred ceeeeEeccccccee--EEecCCCEEEEEcCCC----EEEEEecccc--ccccccccccee-----eeceeecccCCCee
Confidence 333 33333343344 3455566777665433 2555555553 222222221111 11114456677766
Q ss_pred EEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEE-EeccCcccccceeEEeccCCccccccccCCEEEEEEe
Q 002194 525 IAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKER-IWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKE 603 (954)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (954)
+... ....|++||+.+|+..+ +...........+. ..+|+||+..++....
T Consensus 274 ~s~s---------------------~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~-------~v~~s~~~~~la~g~~ 325 (342)
T d2ovrb2 274 ITSS---------------------DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW-------RIRASNTKLVCAVGSR 325 (342)
T ss_dssp EEEE---------------------TTSEEEEEETTTCCEEEEEEECTTGGGTCEEE-------EEEECSSEEEEEEECS
T ss_pred EEEc---------------------CCCEEEEEECCCCCEEEEEecccCCCCCCCEE-------EEEECCCCCEEEEEeC
Confidence 6554 12359999999987643 32211100000111 1468888765554444
Q ss_pred cCCCCceEEEEECC
Q 002194 604 SKTENTQYYIQSWP 617 (954)
Q Consensus 604 s~~~p~~l~~~~~~ 617 (954)
..+.-..++++|.+
T Consensus 326 dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 326 NGTEETKLLVLDFD 339 (342)
T ss_dssp SSSSCCEEEEEECC
T ss_pred CCCCeeEEEEEeCC
Confidence 44455678888864
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.87 E-value=6.5e-07 Score=94.54 Aligned_cols=151 Identities=9% Similarity=0.053 Sum_probs=86.3
Q ss_pred ccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEE
Q 002194 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (954)
Q Consensus 338 ~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~ 417 (954)
.+.++|+.++....+ ..+.+||+...+........ ........|+|+++.++..
T Consensus 166 ~~~~~~~~~~~~~~d-------------~~i~~~d~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~- 219 (355)
T d1nexb2 166 TVSGHGNIVVSGSYD-------------NTLIVWDVAQMKCLYILSGH------------TDRIYSTIYDHERKRCISA- 219 (355)
T ss_dssp EEEEETTEEEEEETT-------------SCEEEEETTTTEEEEEECCC------------SSCEEEEEEETTTTEEEEE-
T ss_pred ccccccceeeeeccc-------------ceeeeeecccccceeeeecc------------ccccccccccccceeeecc-
Confidence 456677777776633 37889998865543322211 1223467899999876655
Q ss_pred EeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEE
Q 002194 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (954)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 497 (954)
...+.|.+++. .++.....+..+...+..++|+ ++.|+..+.++ .|.++|+.++ ....
T Consensus 220 ------------~~d~~i~i~d~--~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg----~i~iwd~~~~--~~~~ 277 (355)
T d1nexb2 220 ------------SMDTTIRIWDL--ENGELMYTLQGHTALVGLLRLS--DKFLVSAAADG----SIRGWDANDY--SRKF 277 (355)
T ss_dssp ------------ETTSCEEEEET--TTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTS----EEEEEETTTC--CEEE
T ss_pred ------------cccceEEeeec--cccccccccccccccccccccc--cceeeeeeccc----cccccccccc--ceec
Confidence 33457888886 2333334455556667777775 45666664432 3555566664 2222
Q ss_pred EecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeE
Q 002194 498 LFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (954)
Q Consensus 498 l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 565 (954)
... ...+.. ...++++++.++... ...|++||+++|+..
T Consensus 278 ~~~--~~~~~~-----~~~~~~~~~~l~~g~----------------------d~~i~vwd~~tg~~~ 316 (355)
T d1nexb2 278 SYH--HTNLSA-----ITTFYVSDNILVSGS----------------------ENQFNIYNLRSGKLV 316 (355)
T ss_dssp EEE--CTTCCC-----CCEEEECSSEEEEEE----------------------TTEEEEEETTTCCBC
T ss_pred ccc--cCCceE-----EEEEcCCCCEEEEEe----------------------CCEEEEEECCCCCEE
Confidence 211 111111 145677887665543 124999999988753
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.83 E-value=4.6e-08 Score=102.92 Aligned_cols=179 Identities=14% Similarity=0.153 Sum_probs=112.7
Q ss_pred CCcEEEEcCCCCCCCCCCccc---c--------hhhHHHHHHHHHHHHHHHHHcCCCCCCcE-EEEeeChHHHHHHHHHH
Q 002194 711 RGFAILGGPTTPIIGEGDEEA---N--------DRFVEQLVACAEAAVEEVVRRGVAHPSKI-AVGGHSYGAFMTANLLA 778 (954)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~---~--------~~~~~~~~~D~~~av~~l~~~~~~d~~ri-~l~G~S~GG~~a~~~a~ 778 (954)
.-|-|++++.+|.. +|-+.. + ..+..-.+.|..++-..|.++-.| +|+ +|+|.||||+.|+..+.
T Consensus 77 ~kyfVI~~n~lG~~-~gSs~p~s~~p~tg~~~g~~FP~iti~D~v~aq~~Ll~~LGI--~~l~~viG~SmGGmqAl~wa~ 153 (357)
T d2b61a1 77 DRYFFISSNVLGGC-KGTTGPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEHLGI--SHLKAIIGGSFGGMQANQWAI 153 (357)
T ss_dssp TTCEEEEECCTTCS-SSSSCTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHTTC--CCEEEEEEETHHHHHHHHHHH
T ss_pred CceEEEEecccCCc-cccCCcCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhCc--ceEEEEecccHHHHHHHHHHH
Confidence 45888986666532 221110 0 112223477888888878776445 476 88899999999999999
Q ss_pred hCCCcccEEEEeccCCCCCC----------------CCC--C-Ccc-------------------------------c--
Q 002194 779 HAPHLFCCGIARSGAYNRTL----------------TPF--G-FQN-------------------------------E-- 806 (954)
Q Consensus 779 ~~p~~~~a~v~~~~~~~~~~----------------~~~--~-~~~-------------------------------~-- 806 (954)
++|+++..+|++++..-... ..| + +.. .
T Consensus 154 ~~Pd~v~~~i~i~~~a~~s~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~ 233 (357)
T d2b61a1 154 DYPDFMDNIVNLCSSIYFSAEAIGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATK 233 (357)
T ss_dssp HSTTSEEEEEEESCCSSCCHHHHHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBC
T ss_pred hhhHHHhhhcccccccccchhHHHHHHHHHHHHHcCCCCCCCCcccCCCchhHHHHHHHHHHhhccCHHHHHHHhccccc
Confidence 99999999999886421000 000 0 000 0
Q ss_pred -cchhhh---cHHHH------------------------HhcCc-------ccccCCCCCCEEEEEeCCCCCCCCchHHH
Q 002194 807 -DRTLWE---ATSTY------------------------VEMSP-------FMSANKLKKPILLVHGEEDNNSGTLTMQS 851 (954)
Q Consensus 807 -~~~~~~---~~~~~------------------------~~~sp-------~~~~~~~~~P~Lii~G~~D~~v~~~~~~~ 851 (954)
....|. ..+.| ...++ ...+++|++|+|+|..+.|..+| +++.
T Consensus 234 ~~~~~~~~~~~vesyL~~~g~kf~~rfDan~yl~l~~a~~~~D~~~~~~~l~~aL~~I~a~vLvi~~~sD~lFp--p~~~ 311 (357)
T d2b61a1 234 SDGSFWGDYFQVESYLSYQGKKFLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFK--PIDL 311 (357)
T ss_dssp TTCCTTSCCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSC--HHHH
T ss_pred cccccccchhhHHHHHHHHHHHHHhhCCHHHHHHHHHHhhhcccccccccHHHHHhhcCCCEEEEEeCCccccC--HHHH
Confidence 000000 00111 11111 12367899999999999999999 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCC-CCcCCCcccHHHHHHHHHHHHH
Q 002194 852 DRFFNALKGHGALCRLVILPFE-SHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~-~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+++.+.|+..+++++++.++.. ||.-. ..+...+.+.|.+||.
T Consensus 312 ~~~a~~l~~~~~~v~~~~I~S~~GHdaf-L~e~~~~~~~I~~fL~ 355 (357)
T d2b61a1 312 YKSKQLLEQSGVDLHFYEFPSDYGHDAF-LVDYDQFEKRIRDGLA 355 (357)
T ss_dssp HHHHHHHHHTTCEEEEEEECCTTGGGHH-HHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEECCCCCcccc-CcCHHHHHHHHHHHHc
Confidence 9999999999999999999964 77521 1223444555666654
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.82 E-value=1.5e-06 Score=95.46 Aligned_cols=253 Identities=10% Similarity=0.041 Sum_probs=138.3
Q ss_pred ceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcc---cccccCCCCcceEEEeccCceE--EEeccCCC
Q 002194 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYS---FIVPCGRFPRQVGVWTTDGIFV--RELCDLPL 386 (954)
Q Consensus 314 ~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~---~~~~~~~~~~~l~l~d~~g~~~--~~l~~~~~ 386 (954)
..|+.+|+ +|+.....-. ....+++|++|++.|+|+....+.. ...+....+..++++.+.+... ..+.....
T Consensus 151 ~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d 230 (430)
T d1qfma1 151 VTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD 230 (430)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred heeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCcccccccccccc
Confidence 45889999 8865432222 3346789999999999988654321 1111223345777777765322 22222110
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCC-----CceEEeec-ccccCc
Q 002194 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-----GPEILHKL-DLRYGG 460 (954)
Q Consensus 387 ~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-----~~~~l~~~-~~~~~~ 460 (954)
. + .....+..|+||+.+++.+.... .....+|..++...... ....+... .....
T Consensus 231 ~---~-------~~~~~~~~s~d~~~l~i~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~- 291 (430)
T d1qfma1 231 E---P-------KWMGGAELSDDGRYVLLSIREGC--------DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD- 291 (430)
T ss_dssp C---T-------TCEEEEEECTTSCEEEEEEECSS--------SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-
T ss_pred C---C-------ceEEeeeccCCcceeeEEeeccC--------CccEEEEEeeCCCcccccccccceeEeecccccceE-
Confidence 0 0 11123557889987665533221 22446777775111111 11222211 11111
Q ss_pred eeeccCCceEEEEEeccccceEEEEEcCCCCCCC-cEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEE
Q 002194 461 ISWCDDSLALVYESWYKTRRTRTWVISPGSKDVA-PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYIL 539 (954)
Q Consensus 461 ~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~ 539 (954)
. ...+|..+++.++.+..+.+|..++++..... .+.+.......+.. -.++..+.+|+.....
T Consensus 292 ~-~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~------~~~~~~~~~lvl~~~~--------- 355 (430)
T d1qfma1 292 Y-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE------WVACVRSNFLVLCYLH--------- 355 (430)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEE------EEEEETTTEEEEEEEE---------
T ss_pred E-EecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceee------eEEEEECCEEEEEEEc---------
Confidence 1 23356667777776666688999998865321 12332221111110 1123334455444321
Q ss_pred EecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002194 540 LNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (954)
Q Consensus 540 ~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g 619 (954)
...+.|+++++++++...+...+.. ++.. .+.++++..+.+..++..+|+.+|.+|+.++
T Consensus 356 ---------~~~~~l~v~~~~~~~~~~~~~~~~~----sv~~-------~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~ 415 (430)
T d1qfma1 356 ---------DVKNTLQLHDLATGALLKIFPLEVG----SVVG-------YSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (430)
T ss_dssp ---------TTEEEEEEEETTTCCEEEEECCCSS----EEEE-------EECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred ---------CCEeEEEEEECCCCcEEEecCCCCc----eEee-------ccCCCCCCEEEEEEcCCCCCCeEEEEECCCC
Confidence 1356799999999998887654432 1221 1234567789999999999999999999988
Q ss_pred ce
Q 002194 620 KS 621 (954)
Q Consensus 620 ~~ 621 (954)
+.
T Consensus 416 ~~ 417 (430)
T d1qfma1 416 EL 417 (430)
T ss_dssp SC
T ss_pred Cc
Confidence 64
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=98.79 E-value=3.6e-09 Score=105.98 Aligned_cols=186 Identities=11% Similarity=-0.013 Sum_probs=96.9
Q ss_pred CccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002194 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (954)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (954)
..++||++||..... ..| ..++..| .+|.|.. .+..|++. ..+++.+.+.
T Consensus 16 ~~~~l~~lhg~~g~~-----------~~~----~~la~~L--~~~~v~~---~~~~g~~~----------~a~~~~~~i~ 65 (230)
T d1jmkc_ 16 QEQIIFAFPPVLGYG-----------LMY----QNLSSRL--PSYKLCA---FDFIEEED----------RLDRYADLIQ 65 (230)
T ss_dssp CSEEEEEECCTTCCG-----------GGG----HHHHHHC--TTEEEEE---ECCCCSTT----------HHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCH-----------HHH----HHHHHHC--CCCEEec---cCcCCHHH----------HHHHHHHHHH
Confidence 368999999963111 112 1334444 4798988 44455543 2334444433
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc---ccEEEEeccCCCCCCCCCC--Cccc-------------cchh
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL---FCCGIARSGAYNRTLTPFG--FQNE-------------DRTL 810 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~---~~a~v~~~~~~~~~~~~~~--~~~~-------------~~~~ 810 (954)
+. ....++.|+||||||.+|+.+|.+.|++ +..++...+.......... .... ....
T Consensus 66 ---~~--~~~~~~~lvGhS~GG~vA~~~A~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (230)
T d1jmkc_ 66 ---KL--QPEGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNS 140 (230)
T ss_dssp ---HH--CCSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTTTCSGGGS
T ss_pred ---Hh--CCCCcEEEEeeccChHHHHHHHHhhhhhCccceeeecccccCccchhhhhhhhhhhhhhhhhhcccccccccc
Confidence 32 2335799999999999999999876544 4444444332111000000 0000 0000
Q ss_pred hh-------cH-HHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC-Ccc
Q 002194 811 WE-------AT-STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA-ARE 881 (954)
Q Consensus 811 ~~-------~~-~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~-~~~ 881 (954)
.. .. ..+..........++++|+++++|++|..++ .. ...+.+ ....+++++.+++ +|... ..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~l~i~g~~D~~~~--~~-~~~w~~---~~~~~~~~~~i~g-~H~~ml~~~ 213 (230)
T d1jmkc_ 141 EAVKHGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIP--EW-LASWEE---ATTGAYRMKRGFG-THAEMLQGE 213 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCC--TT-EECSGG---GBSSCEEEEECSS-CGGGTTSHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccccCcceeeeecCCcccc--hh-HHHHHH---hccCCcEEEEEcC-CChhhcCCc
Confidence 00 00 0111111223446788999999999999876 33 222222 1223588888986 89743 223
Q ss_pred cHHHHHHHHHHHHHH
Q 002194 882 SIMHVLWETDRWLQK 896 (954)
Q Consensus 882 ~~~~~~~~i~~fl~~ 896 (954)
...++.+.|.+||++
T Consensus 214 ~~~~va~~I~~~L~~ 228 (230)
T d1jmkc_ 214 TLDRNAGILLEFLNT 228 (230)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhh
Confidence 334555555555543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.79 E-value=3.8e-07 Score=97.93 Aligned_cols=155 Identities=10% Similarity=-0.044 Sum_probs=78.2
Q ss_pred ceEEEEEe--CCceeEc-----CC-CccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce---EEEec
Q 002194 314 TQLVLVSL--DGTVKEI-----GP-PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF---VRELC 382 (954)
Q Consensus 314 ~~l~~~~~--~G~~~~l-----~~-~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~---~~~l~ 382 (954)
..|++++. +|..... .. +.....++|+|||++++..... ..+|.+|+.+++. ...+.
T Consensus 167 d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~------------~~~V~v~~~~~~~~~~~~~~~ 234 (365)
T d1jofa_ 167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA------------GNRICEYVIDPATHMPVYTHH 234 (365)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTTCCEEEEEE
T ss_pred CEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC------------CCEEEEEEecCCCceEEEEee
Confidence 34666665 4543322 11 2556778999999987776532 3378888887542 22221
Q ss_pred cCCCcc-cCC---ccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE-e--e--
Q 002194 383 DLPLAE-DIP---IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-H--K-- 453 (954)
Q Consensus 383 ~~~~~~-~~p---~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~--~-- 453 (954)
..+... ..+ ............+.++|||+.++.. ++.+.. .....|..+.+ ...+..... . .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs-nr~~~~------~~~~~i~~~~~--~~~g~~~~~~~~~~~~ 305 (365)
T d1jofa_ 235 SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS-SRANKF------ELQGYIAGFKL--RDCGSIEKQLFLSPTP 305 (365)
T ss_dssp EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE-EEESST------TSCCEEEEEEE--CTTSCEEEEEEEEECS
T ss_pred eeccccccccccccccccccCCccceEECCCCCEEEEE-cccCCC------ccceEEEEEEe--cCCCceeeEeEeeEEE
Confidence 111100 000 0000111223468999999976554 332211 11223555554 122233222 1 1
Q ss_pred -cccccCceeecc-CCceEEEEEeccccceEEEEEcCCC
Q 002194 454 -LDLRYGGISWCD-DSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 454 -~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
.......++++| ||++|+.+.... ....+|.++.++
T Consensus 306 ~~G~~p~~i~~~p~~G~~l~va~~~s-~~v~v~~~~~~~ 343 (365)
T d1jofa_ 306 TSGGHSNAVSPCPWSDEWMAITDDQE-GWLEIYRWKDEF 343 (365)
T ss_dssp SCCTTCCCEEECTTCTTEEEEECSSS-CEEEEEEEETTE
T ss_pred cCCCCccEEEecCCCCCEEEEEeCCC-CeEEEEEEeCCc
Confidence 122346689998 788887774443 346677766543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.75 E-value=1.5e-07 Score=98.96 Aligned_cols=106 Identities=7% Similarity=0.008 Sum_probs=63.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|||||++||..+.+ +.|+||++.... .....+....+..
T Consensus 13 ~I~~l~fsp~~~~L~s~s~D---------------------------------g~v~iwd~~~~~--~~~~~~~~~~h~~ 57 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSWD---------------------------------GSLTVYKFDIQA--KNVDLLQSLRYKH 57 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETT---------------------------------SEEEEEEEETTT--TEEEEEEEEECSS
T ss_pred CEEEEEEeCCCCEEEEEECC---------------------------------CeEEEEEccCCC--cceEEEEecCCCC
Confidence 46789999999999998876 579999986422 1111122122334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
.+...+|+|++..++++.. ....|++++...+............. .....+.+++..++..
T Consensus 58 ~V~~v~f~~~~~~~l~sg~--------~d~~v~~w~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 118 (342)
T d1yfqa_ 58 PLLCCNFIDNTDLQIYVGT--------VQGEILKVDLIGSPSFQALTNNEANL---GICRICKYGDDKLIAA 118 (342)
T ss_dssp CEEEEEEEESSSEEEEEEE--------TTSCEEEECSSSSSSEEECBSCCCCS---CEEEEEEETTTEEEEE
T ss_pred CEEEEEEeCCCCCEEEEcc--------cccceeeeeccccccccccccccccc---cccccccccccccccc
Confidence 6888999998776666542 23467777776655443332222110 1233455666655544
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.75 E-value=2.1e-08 Score=108.35 Aligned_cols=207 Identities=10% Similarity=-0.064 Sum_probs=110.0
Q ss_pred eeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCC
Q 002194 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (954)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~ 273 (954)
...+|||++|+... ..+.+|.++|+++++..++...+... ....++++|||+.+++........
T Consensus 77 t~gtpDGr~lfV~d--------~~~~rVavIDl~t~k~~~ii~iP~g~---gphgi~~spdg~t~YV~~~~~~~v----- 140 (441)
T d1qnia2 77 TDGRYDGKYLFIND--------KANTRVARIRLDIMKTDKITHIPNVQ---AIHGLRLQKVPKTNYVFCNAEFVI----- 140 (441)
T ss_dssp ETTEEEEEEEEEEE--------TTTTEEEEEETTTTEEEEEEECTTCC---CEEEEEECCSSBCCEEEEEECSCE-----
T ss_pred ecccCCCCEEEEEc--------CCCCEEEEEECCCCcEeeEEecCCCC---CccceEEeccCCEEEEEeccCCcc-----
Confidence 33579999875532 24779999999999887766544321 145789999999776652111110
Q ss_pred CCCCCCceeeccCCceeeechhhhhccCcccccccccc-ccceEEEEEe-CCc-eeEcCCCccccccccCCCCcEEEEEe
Q 002194 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYY-ATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISS 350 (954)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~-~~~~l~~~~~-~G~-~~~l~~~~~~~~~~~SpDGk~l~~~s 350 (954)
.-..++..+... ....+..+|. +.+ ..++.-++....+.++|||+++++++
T Consensus 141 --------------------------~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~ 194 (441)
T d1qnia2 141 --------------------------PQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTC 194 (441)
T ss_dssp --------------------------ESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred --------------------------cccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEe
Confidence 000011111100 1122334565 432 33444445677899999999999887
Q ss_pred ecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccc
Q 002194 351 IHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEV 429 (954)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~ 429 (954)
...+ .+..++..+. ....+... .......++|||+.+..
T Consensus 195 ~nse------------~~~~id~~t~~~~d~i~v~--------------n~p~~~~~~~dGk~~~v-------------- 234 (441)
T d1qnia2 195 YNSE------------RAVDLAGTMRNDRDWVVVF--------------NVERIAAAVKAGNFKTI-------------- 234 (441)
T ss_dssp SCTT------------CCSSHHHHTCSSBCEEEEE--------------EHHHHHHHHHTTCCBCC--------------
T ss_pred cCCC------------ceEEEeccCcceEEEEEeC--------------CccceEEEecCCCEEEe--------------
Confidence 5432 1111122211 11111110 12234678999985432
Q ss_pred cCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 430 TPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 430 ~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
...+.+.+... ...+............++..||||++++.+...++ .+-++|.
T Consensus 235 ~~~~v~vvd~~---~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~---tvsv~d~ 287 (441)
T d1qnia2 235 GDSKVPVVDGR---GESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSP---TVSVIAI 287 (441)
T ss_dssp TTCCCCEEECS---SSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSS---BEEEEEG
T ss_pred CCCCcEEEEcc---cCCceEEEEeCCCCccCceECCCCCEEEEeCCcCC---cEEEEEe
Confidence 12223333332 33333322223334678999999999888754443 3555554
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=98.74 E-value=1.6e-08 Score=104.72 Aligned_cols=172 Identities=16% Similarity=0.135 Sum_probs=96.8
Q ss_pred CCcEEEEcCCCCCCCCCCcccch-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC----C
Q 002194 711 RGFAILGGPTTPIIGEGDEEAND-----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA----P 781 (954)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~~-----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~----p 781 (954)
.++.|+. .+..|+|.+.... ........++.+++ .+. ....++.|+||||||.+|+.+|.+. +
T Consensus 87 ~~~~V~a---l~~pG~~~~~~~~~~~~~~s~~~~a~~~~~~i---~~~--~~~~P~vL~GhS~GG~vA~e~A~~l~~~~g 158 (283)
T d2h7xa1 87 EERDFLA---VPLPGYGTGTGTGTALLPADLDTALDAQARAI---LRA--AGDAPVVLLGHSGGALLAHELAFRLERAHG 158 (283)
T ss_dssp TTCCEEE---ECCTTCCBC---CBCCEESSHHHHHHHHHHHH---HHH--HTTSCEEEEEETHHHHHHHHHHHHHHHHHS
T ss_pred CCceEEE---EeCCCCCCCCCCccccccCCHHHHHHHHHHHH---HHh--cCCCceEEEEeccchHHHHHHHHhhHHHcC
Confidence 4688888 5556666553321 22344444444433 332 1234799999999999999998764 4
Q ss_pred CcccEEEEeccCCCCCCCCCC--------------CccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCc
Q 002194 782 HLFCCGIARSGAYNRTLTPFG--------------FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTL 847 (954)
Q Consensus 782 ~~~~a~v~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~ 847 (954)
..+.++|++.+.......... ..............+.+.........+++|+|+++|++|..++
T Consensus 159 ~~v~~LvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~~Pvl~i~g~~d~~~~-- 236 (283)
T d2h7xa1 159 APPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGRYARFLAGPRPGRSSAPVLLVRASEPLGDW-- 236 (283)
T ss_dssp CCCSEEEEESCCCTTCCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHSCCCCCCCSCEEEEEESSCSSCC--
T ss_pred CCceEEEEecCCccccccchhhhhhhhHHHhhcccccccccHHHHHHHHHHHHHhhccccccCCCeEEEEeCCCCCCC--
Confidence 568888888753221100000 0000000000001111111112345688999999999999887
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 848 TMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 848 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
......+.+. ....++++.+|+ +|.....+....+.+.|.+||+.
T Consensus 237 ~~~~~~w~~~---~~~~~~~~~v~G-~H~~ml~e~~~~vA~~i~~~L~~ 281 (283)
T d2h7xa1 237 QEERGDWRAH---WDLPHTVADVPG-DHFTMMRDHAPAVAEAVLSWLDA 281 (283)
T ss_dssp CGGGCCCSCC---CSSCSEEEEESS-CTTHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCCcEEEEEcC-CCcccccCCHHHHHHHHHHHHHh
Confidence 6654433222 233468888997 78643345667788889999875
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=2.1e-06 Score=90.49 Aligned_cols=284 Identities=11% Similarity=-0.010 Sum_probs=147.6
Q ss_pred eecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCC
Q 002194 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (954)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~ 274 (954)
.+++||+.|+... ....|.++|+.+++........... +..++|+||+. |+...
T Consensus 18 c~~~~~~~l~tgs---------~Dg~i~vWd~~~~~~~~~l~~H~~~----V~~l~~s~~~~-l~s~s------------ 71 (355)
T d1nexb2 18 CLQFEDNYVITGA---------DDKMIRVYDSINKKFLLQLSGHDGG----VWALKYAHGGI-LVSGS------------ 71 (355)
T ss_dssp EEEEETTEEEEEE---------TTTEEEEEETTTTEEEEEEECCSSC----EEEEEEETTTE-EEEEE------------
T ss_pred EEEECCCEEEEEe---------CCCeEEEEECCCCcEEEEEECCCCC----EEEEEEcCCCE-EEEEe------------
Confidence 4677899887644 2457788898888765444333322 77899999874 44431
Q ss_pred CCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEc-CCC---ccccccccCCCCcEEEEE
Q 002194 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI-GPP---AVYTSLDPSPDEKYILIS 349 (954)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l-~~~---~~~~~~~~SpDGk~l~~~ 349 (954)
....|.+++. .+..... ... .......++++++.++..
T Consensus 72 -------------------------------------~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (355)
T d1nexb2 72 -------------------------------------TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 114 (355)
T ss_dssp -------------------------------------TTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEE
T ss_pred -------------------------------------cccccccccccccccccccccccccccccccccccccceeeee
Confidence 1123555565 4432222 111 233456678999999888
Q ss_pred eecCCcccccccCCCCcceEEEeccCceEEEeccCCCcc----cCCc----cc-cccccCccceeeccCCCCceEEEEec
Q 002194 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE----DIPI----AF-NSVRKGMRSINWRSDKPSTLYWAETQ 420 (954)
Q Consensus 350 s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~----~~p~----~~-~~~~~g~~~~~wspDg~~i~~~~~~~ 420 (954)
+.+ +.+.+|++............... ..+. .. ........-..+.++|+.++..
T Consensus 115 ~~d-------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---- 177 (355)
T d1nexb2 115 SRD-------------NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG---- 177 (355)
T ss_dssp ETT-------------SEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEE----
T ss_pred cCC-------------CcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeee----
Confidence 743 37889998754322111100000 0000 00 0000000113345555544333
Q ss_pred cCCCccccccCCCeEEEEecCCCCCCCc-eEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002194 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 499 (954)
.....+.++++ ..++. ..............|+|++..++....++. |.+++..++ ......
T Consensus 178 ---------~~d~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----i~i~d~~~~--~~~~~~ 239 (355)
T d1nexb2 178 ---------SYDNTLIVWDV---AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT----IRIWDLENG--ELMYTL 239 (355)
T ss_dssp ---------ETTSCEEEEET---TTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC----EEEEETTTC--CEEEEE
T ss_pred ---------cccceeeeeec---ccccceeeeeccccccccccccccceeeecccccce----EEeeecccc--cccccc
Confidence 23456788885 33322 223334455567899999999888765432 556666664 233333
Q ss_pred cCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCccccccee
Q 002194 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (954)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 579 (954)
..+...+ ..++.++++++... ....|++||+.++...........
T Consensus 240 ~~h~~~v--------~~~~~~~~~l~~~~---------------------~dg~i~iwd~~~~~~~~~~~~~~~------ 284 (355)
T d1nexb2 240 QGHTALV--------GLLRLSDKFLVSAA---------------------ADGSIRGWDANDYSRKFSYHHTNL------ 284 (355)
T ss_dssp CCCSSCC--------CEEEECSSEEEEEC---------------------TTSEEEEEETTTCCEEEEEECTTC------
T ss_pred ccccccc--------cccccccceeeeee---------------------cccccccccccccceecccccCCc------
Confidence 3322222 22334556665554 123599999988765443332211
Q ss_pred EEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCcee
Q 002194 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (954)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~ 622 (954)
.. -..+++++.. +...+. ..+++|++.+|+..
T Consensus 285 ~~------~~~~~~~~~~-l~~g~d----~~i~vwd~~tg~~~ 316 (355)
T d1nexb2 285 SA------ITTFYVSDNI-LVSGSE----NQFNIYNLRSGKLV 316 (355)
T ss_dssp CC------CCEEEECSSE-EEEEET----TEEEEEETTTCCBC
T ss_pred eE------EEEEcCCCCE-EEEEeC----CEEEEEECCCCCEE
Confidence 11 1235666654 444332 47999999888653
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=98.72 E-value=4.8e-07 Score=95.12 Aligned_cols=153 Identities=14% Similarity=0.033 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC-------------------CCC
Q 002194 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR-------------------TLT 799 (954)
Q Consensus 739 ~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~-------------------~~~ 799 (954)
.+.|+.++-..|.+.-.|. +--+|+|.||||+.|+..|.++|+.+..+|++++.... ...
T Consensus 122 t~~D~v~~~~~ll~~LGI~-~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~sa~~s~~~~~~~~~~~~aI~~Dp~~~ 200 (362)
T d2pl5a1 122 SIQDMVKAQKLLVESLGIE-KLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDPNWK 200 (362)
T ss_dssp CHHHHHHHHHHHHHHTTCS-SEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTSTTCG
T ss_pred hhHHHHHHHHHHHHHhCcC-eeEEEeehhHHHHHHHHHHHhCchHhhhhcccccccccCHHHHHHHHHHHHHHhcCCccc
Confidence 4778888877777764453 23458899999999999999999999999999863210 000
Q ss_pred CCCCccc---c-----c----------------------------hh-----hh-----------cH-------HHHHhc
Q 002194 800 PFGFQNE---D-----R----------------------------TL-----WE-----------AT-------STYVEM 820 (954)
Q Consensus 800 ~~~~~~~---~-----~----------------------------~~-----~~-----------~~-------~~~~~~ 820 (954)
.-.|... . + .. |. ++ +.+...
T Consensus 201 ~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~~~~~~~~~~ve~yl~~~g~k~~~rfDan~yl~l~~a~~~~ 280 (362)
T d2pl5a1 201 NGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKALDHY 280 (362)
T ss_dssp GGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHHHHHC
T ss_pred cCCcccCChhHHHHHHHHHHHHHHcCchhhhhhhccccccccccchhHHHHHHHHHHHHHHHhcCCHHHHHHHHhhhhcc
Confidence 0000000 0 0 00 00 00 111111
Q ss_pred Cc------ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC-CCCcCCCcccHHHHHHHHHHH
Q 002194 821 SP------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF-ESHGYAARESIMHVLWETDRW 893 (954)
Q Consensus 821 sp------~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i~~f 893 (954)
++ ...+++|++|+|+|..+.|..+| +++.+++.+.|+..+++++++.++. .||.-. ..+...+.+.|.+|
T Consensus 281 Di~~~~~l~~aL~~I~AkvLvi~~~sD~lFp--p~~~~~~a~~l~~a~~~v~~~eI~S~~GHdaF-L~e~~~~~~~I~~F 357 (362)
T d2pl5a1 281 SLGKGKELTAALSNATCRFLVVSYSSDWLYP--PAQSREIVKSLEAADKRVFYVELQSGEGHDSF-LLKNPKQIEILKGF 357 (362)
T ss_dssp BCCSHHHHHHHHTTCCSEEEEEEETTCCSSC--HHHHHHHHHHHHHTTCCEEEEEECCCBSSGGG-GSCCHHHHHHHHHH
T ss_pred cccccccHHHHHhhCCCCEEEEEeCcccCcC--HHHHHHHHHHHHhCCCCeEEEEeCCCCCcchh-ccCHHHHHHHHHHH
Confidence 21 12367899999999999999999 9999999999999999999998884 588532 22334556666677
Q ss_pred HH
Q 002194 894 LQ 895 (954)
Q Consensus 894 l~ 895 (954)
|+
T Consensus 358 L~ 359 (362)
T d2pl5a1 358 LE 359 (362)
T ss_dssp HH
T ss_pred Hc
Confidence 64
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.67 E-value=2.6e-06 Score=93.47 Aligned_cols=282 Identities=11% Similarity=0.028 Sum_probs=141.4
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCC
Q 002194 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (954)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (954)
....+||||+++||+.+.+ +++...|+++|+++|+....+- +... ...++|++|++.|+|+..........
T Consensus 128 ~~~~~Spd~~~la~s~d~~----G~e~~~l~v~Dl~tg~~~~~~i-~~~~----~~~~~W~~D~~~~~Y~~~~~~~~~~~ 198 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSAS----GSDWVTIKFMKVDGAKELPDVL-ERVK----FSCMAWTHDGKGMFYNAYPQQDGKSD 198 (430)
T ss_dssp EEEEECTTSSEEEEEEEET----TCSCEEEEEEETTTTEEEEEEE-EEEC----SCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred cceEecCCCCEEEEEeccc----cCchheeEEeccCcceeccccc-cccc----ccceEEcCCCCEEEEEEeccccCccc
Confidence 4457899999999998654 7889999999999998654321 1111 35789999999999884322211000
Q ss_pred CCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC--ceeEcCCC----ccccccccCCCCc
Q 002194 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--TVKEIGPP----AVYTSLDPSPDEK 344 (954)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G--~~~~l~~~----~~~~~~~~SpDGk 344 (954)
.. .-+.....++|+..+ ++ +-..+... ........|+||+
T Consensus 199 ~~---------------------------------~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~ 245 (430)
T d1qfma1 199 GT---------------------------------ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245 (430)
T ss_dssp SS---------------------------------CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC
T ss_pred cc---------------------------------ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcc
Confidence 00 000001235777776 43 22333332 2334567899999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCcccee-eccCCCCceEEEEeccCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN-WRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~-wspDg~~i~~~~~~~~~~ 423 (954)
++++.......+ ...+++.++............. .+. .. ....... ...+|..+++.++ .+
T Consensus 246 ~l~i~~~~~~~~--------~~~~~~~d~~~~~~~~~~~~~~---~~~--~~--~~~~~~~~~~~~~~~~~~~Tn-~~-- 307 (430)
T d1qfma1 246 YVLLSIREGCDP--------VNRLWYCDLQQESNGITGILKW---VKL--ID--NFEGEYDYVTNEGTVFTFKTN-RH-- 307 (430)
T ss_dssp EEEEEEECSSSS--------CCEEEEEEGGGSSSSSCSSCCC---EEE--EC--SSSSCEEEEEEETTEEEEEEC-TT--
T ss_pred eeeEEeeccCCc--------cEEEEEeeCCCcccccccccce---eEe--ec--ccccceEEEecCCceeecccC-cc--
Confidence 998766443211 1246666655221000000000 000 00 0000111 2224443333322 11
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEe-ecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCC
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 502 (954)
..+..|+.++++.......+.+. ..+..+..-.++..+..|+.....++ ..+|++++.+++ ....+....
T Consensus 308 ------a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~-~~~l~v~~~~~~--~~~~~~~~~ 378 (430)
T d1qfma1 308 ------SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV-KNTLQLHDLATG--ALLKIFPLE 378 (430)
T ss_dssp ------CTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT-EEEEEEEETTTC--CEEEEECCC
T ss_pred ------cccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCC-EeEEEEEECCCC--cEEEecCCC
Confidence 23557888875211111223343 23333333334455667777655554 478999999886 333443332
Q ss_pred CCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeE
Q 002194 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (954)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 565 (954)
...+.+ ++..++...+.|. .++...+ +.+|.+|+++|+.+
T Consensus 379 ~~sv~~------~~~~~~~~~~~~~--------------~ss~~tP---~~~y~~Dl~t~~~~ 418 (430)
T d1qfma1 379 VGSVVG------YSGQKKDTEIFYQ--------------FTSFLSP---GIIYHCDLTKEELE 418 (430)
T ss_dssp SSEEEE------EECCTTCSEEEEE--------------EECSSCC---CEEEEEETTSSSCC
T ss_pred CceEee------ccCCCCCCEEEEE--------------EcCCCCC---CeEEEEECCCCCcc
Confidence 222111 2223334444433 3443333 45999999998653
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.61 E-value=8.2e-08 Score=103.59 Aligned_cols=263 Identities=14% Similarity=0.006 Sum_probs=130.1
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccc----------cCCCCceEEEEEECCCCcee
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAE----------DSSSSKLRVWVADVDTGKAR 232 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~----------~~~~~~~~l~~~d~~~g~~~ 232 (954)
+.|.++++.+ .+..++...+.+......++||||++++........ ........+-.+|.++.+..
T Consensus 94 ~rVavIDl~t----~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~ 169 (441)
T d1qnia2 94 TRVARIRLDI----MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA 169 (441)
T ss_dssp TEEEEEETTT----TEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred CEEEEEECCC----CcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence 3678888854 555555446655577888999999976654432100 00011223445777776543
Q ss_pred ecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCc----eeeechhhhhccCccccccc
Q 002194 233 PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRD----IIQVRTFQDLLKDEYDEDLF 308 (954)
Q Consensus 233 ~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~r~~~d~l~~~~d~~~~ 308 (954)
.-...+.. ...+.++|||++++++......... +....... .+..+... .....|++..
T Consensus 170 ~qI~v~~~-----p~~v~~spdGk~a~vt~~nse~~~~----------id~~t~~~~d~i~v~n~p~~--~~~~~dGk~~ 232 (441)
T d1qnia2 170 WQVIVDGN-----LDNTDADYTGKYATSTCYNSERAVD----------LAGTMRNDRDWVVVFNVERI--AAAVKAGNFK 232 (441)
T ss_dssp EEEEESSC-----CCCEEECSSSSEEEEEESCTTCCSS----------HHHHTCSSBCEEEEEEHHHH--HHHHHTTCCB
T ss_pred EEEecCCC-----ccceEECCCCCEEEEEecCCCceEE----------EeccCcceEEEEEeCCccce--EEEecCCCEE
Confidence 22111221 5689999999999988443322210 00000000 00011000 0111122222
Q ss_pred cccccceEEEEEe--C-CceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCC
Q 002194 309 DYYATTQLVLVSL--D-GTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP 385 (954)
Q Consensus 309 ~~~~~~~l~~~~~--~-G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~ 385 (954)
. .+...+..++. + +..+.|..+....++.+||||++++.+... ...+.+||++.-+ .+....
T Consensus 233 ~-v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~------------~~tvsv~d~~k~~--~~~~~~ 297 (441)
T d1qnia2 233 T-IGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKL------------SPTVSVIAIDKLD--DLFEDK 297 (441)
T ss_dssp C-CTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTT------------SSBEEEEEGGGHH--HHTTTS
T ss_pred E-eCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCc------------CCcEEEEEeehhh--hHhhcc
Confidence 1 12233444553 2 345556555566789999999999887633 3389999986311 000000
Q ss_pred CcccCCc-cccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCC----CCCCce----EE-----
Q 002194 386 LAEDIPI-AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV----QGEGPE----IL----- 451 (954)
Q Consensus 386 ~~~~~p~-~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~g~~~~----~l----- 451 (954)
....... .......|...-+|.++|. +|.+.. ...+|..|+++.. .+.... .+
T Consensus 298 ~~~~~~~~~~~~~glgplh~~fd~~g~--~yts~~-----------~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~ 364 (441)
T d1qnia2 298 IELRDTIVAEPELGLGPLHTTFDGRGN--AYTTLF-----------IDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQ 364 (441)
T ss_dssp SCGGGGEEECCBCCSCEEEEEECSSSE--EEEEET-----------TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC
T ss_pred CCcceEEEeecccccCcccceecCCce--EEEccc-----------ccceEEEeccchhhhhhccCCCceeEeccccccC
Confidence 0000000 0001112333457877774 454222 2346677764110 122211 11
Q ss_pred eecccccCceeeccCCceEEEEE
Q 002194 452 HKLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 452 ~~~~~~~~~~~~spDg~~l~~~~ 474 (954)
..+.....+.+++|||++|+...
T Consensus 365 ~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 365 PGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp EEEEEETTTTSTTCCCCEEEEEE
T ss_pred CCCCccccccccCCCCcEEEecC
Confidence 23444567789999999999874
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=98.60 E-value=3.2e-07 Score=97.10 Aligned_cols=53 Identities=19% Similarity=0.119 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcE-EEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 739 LVACAEAAVEEVVRRGVAHPSKI-AVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 739 ~~~D~~~av~~l~~~~~~d~~ri-~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
.+.|+.++-..|.+.-.| +++ +|+|.||||+.|+..+.++|+++..+|++++.
T Consensus 116 ti~D~v~aq~~ll~~LGI--~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~~ 169 (376)
T d2vata1 116 TIRDDVRIHRQVLDRLGV--RQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATS 169 (376)
T ss_dssp CHHHHHHHHHHHHHHHTC--CCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCC
T ss_pred hhHHHHHHHHHHHHHhCc--ceEEEeecccHHHHHHHHHHHhchHHHhhhcccccc
Confidence 367777776666665334 465 79999999999999999999999999998763
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.59 E-value=2e-06 Score=89.43 Aligned_cols=243 Identities=12% Similarity=0.081 Sum_probs=131.8
Q ss_pred ceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeE
Q 002194 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (954)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~ 257 (954)
+.+.++.++.+..+..++++|||+ |+++.. ....||.++.++. ...+...+.. ...++|++||++
T Consensus 17 ~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~--------~~~~I~~i~p~g~-~~~~~~~~~~-----~~gla~~~dG~l 81 (302)
T d2p4oa1 17 PAKIITSFPVNTFLENLASAPDGT-IFVTNH--------EVGEIVSITPDGN-QQIHATVEGK-----VSGLAFTSNGDL 81 (302)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSC-EEEEET--------TTTEEEEECTTCC-EEEEEECSSE-----EEEEEECTTSCE
T ss_pred cccEEEECCCCCCcCCEEECCCCC-EEEEeC--------CCCEEEEEeCCCC-EEEEEcCCCC-----cceEEEcCCCCe
Confidence 445567677666677899999997 555432 3568999998764 4444444432 568899999985
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe---CCceeEcCC---C
Q 002194 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DGTVKEIGP---P 331 (954)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~---~G~~~~l~~---~ 331 (954)
++... ....++.++. ++....+.. .
T Consensus 82 ~v~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (302)
T d2p4oa1 82 VATGW-------------------------------------------------NADSIPVVSLVKSDGTVETLLTLPDA 112 (302)
T ss_dssp EEEEE-------------------------------------------------CTTSCEEEEEECTTSCEEEEEECTTC
T ss_pred EEEec-------------------------------------------------CCceEEEEEecccccceeeccccCCc
Confidence 55430 1122444444 344444432 2
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
.....+++.+||+.++..+ . ...++.++.+++........+.... ............++ .|+.
T Consensus 113 ~~~n~i~~~~~g~~~v~~~-~------------~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ngi~--~~~~ 175 (302)
T d2p4oa1 113 IFLNGITPLSDTQYLTADS-Y------------RGAIWLIDVVQPSGSIWLEHPMLAR--SNSESVFPAANGLK--RFGN 175 (302)
T ss_dssp SCEEEEEESSSSEEEEEET-T------------TTEEEEEETTTTEEEEEEECGGGSC--SSTTCCSCSEEEEE--EETT
T ss_pred cccceeEEccCCCEEeecc-c------------cccceeeeccCCcceeEecCCccce--eeccCccccccccc--ccCC
Confidence 4456788999996644433 1 2377888887765443322211100 00000111122333 3555
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc--eEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCC
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP--EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~--~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~ 489 (954)
.+++. + ...+.|+.++. ...+.. ...........++++++||+ |+++...+ .+|++++.+
T Consensus 176 ~l~~~-~-----------~~~~~i~~~~~--~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~~~---~~V~~i~p~ 237 (302)
T d2p4oa1 176 FLYVS-N-----------TEKMLLLRIPV--DSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATHIY---NSVVRIAPD 237 (302)
T ss_dssp EEEEE-E-----------TTTTEEEEEEB--CTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECBTT---CCEEEECTT
T ss_pred ceeee-c-----------CCCCeEEeccc--cccccccccccccCCCCCcceEECCCCC-EEEEEcCC---CcEEEECCC
Confidence 44333 2 23557888886 222221 22222334457899999997 55554443 459999888
Q ss_pred CCCCCcEEEecC--CCCCccCCCCCCCeee---ccCCcEEEEEE
Q 002194 490 SKDVAPRILFDR--SSEDVYSDPGSPMMRR---TSTGTYVIAKI 528 (954)
Q Consensus 490 ~~~~~~~~l~~~--~~~~~~~~~~~~~~~~---spdG~~l~~~~ 528 (954)
+. ...+... ...... .++| ++|++.|+...
T Consensus 238 G~---~~~~~~~~~~~~~pt------~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 238 RS---TTIIAQAEQGVIGST------AVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp CC---EEEEECGGGTCTTEE------EEEECCSTTTTTEEEEEE
T ss_pred CC---EEEEEecCCCCCCce------EEEEcCCCCCCCEEEEEC
Confidence 73 2222221 111111 1667 67888877665
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=98.54 E-value=2.2e-07 Score=97.67 Aligned_cols=83 Identities=20% Similarity=0.217 Sum_probs=61.6
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 782 (954)
.....|+++||.|+. .+..|+|.+...........++ ++.+.+. .+.++|.++||||||.++..++.++|+
T Consensus 32 ~~~~~L~~~G~~V~~---~~~~g~g~s~~~~~~~~~l~~~----i~~~~~~--~~~~~v~lvGhS~GG~~~~~~~~~~p~ 102 (319)
T d1cvla_ 32 GIQSDLQSHGAKVYV---ANLSGFQSDDGPNGRGEQLLAY----VKQVLAA--TGATKVNLIGHSQGGLTSRYVAAVAPQ 102 (319)
T ss_dssp THHHHHHHTTCCEEE---CCCBCSSCTTSTTSHHHHHHHH----HHHHHHH--HCCSCEEEEEETTHHHHHHHHHHHCGG
T ss_pred HHHHHHHHCCCEEEE---ecCCCCCCCCCCcccHHHHHHH----HHHHHHH--hCCCCEEEEeccccHHHHHHHHHHCcc
Confidence 356788999999999 5556777765544443444444 3333333 134689999999999999999999999
Q ss_pred cccEEEEeccCC
Q 002194 783 LFCCGIARSGAY 794 (954)
Q Consensus 783 ~~~a~v~~~~~~ 794 (954)
+++.+|++++..
T Consensus 103 ~v~~vv~i~~p~ 114 (319)
T d1cvla_ 103 LVASVTTIGTPH 114 (319)
T ss_dssp GEEEEEEESCCT
T ss_pred ccceEEEECCCC
Confidence 999999998753
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.53 E-value=1.1e-06 Score=90.40 Aligned_cols=199 Identities=13% Similarity=0.107 Sum_probs=112.3
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
+....+++||..++... ...+.+++...++..+...... ....++++++.+++...
T Consensus 83 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~------- 138 (287)
T d1pgua2 83 PKVASANNDGFTAVLTN----------DDDLLILQSFTGDIIKSVRLNS-------PGSAVSLSQNYVAVGLE------- 138 (287)
T ss_dssp EEEEEECSSSEEEEEET----------TSEEEEEETTTCCEEEEEECSS-------CEEEEEECSSEEEEEET-------
T ss_pred eeeeeeccCCceEEEee----------cccceeeeccceeeeeeccccc-------eeeeeeccCcceeeecc-------
Confidence 44567888887766642 3467777877766554433222 24567788888776611
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCC--ccccccccCCCCcEE
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP--AVYTSLDPSPDEKYI 346 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~--~~~~~~~~SpDGk~l 346 (954)
+ ...+..+++ +. ....+... ..+..++|||||++|
T Consensus 139 --------------~---------------------------~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 177 (287)
T d1pgua2 139 --------------E---------------------------GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 177 (287)
T ss_dssp --------------T---------------------------TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEE
T ss_pred --------------c---------------------------cceeeeeeccccceeeeeeeccCCceeEEEeccCcccc
Confidence 1 112444555 22 22223222 567889999999999
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
+..+.+ +.+.+||+..+....... ......+..++|+|+++..... .. .+..-
T Consensus 178 ~~g~~d-------------g~i~i~d~~~~~~~~~~~-----------~~h~~~v~~~~~~p~~~~~~~~--~~-~~~~l 230 (287)
T d1pgua2 178 AAGDVM-------------GKILLYDLQSREVKTSRW-----------AFRTSKINAISWKPAEKGANEE--EI-EEDLV 230 (287)
T ss_dssp EEEETT-------------SCEEEEETTTTEEEECCS-----------CCCSSCEEEEEECCCC--------CC-SCCEE
T ss_pred cccccc-------------ccccceeecccccccccc-----------cccccccceeeecccccccccc--cC-CCCee
Confidence 988743 389999998665432111 0112345678899988643322 11 00111
Q ss_pred ccccCCCeEEEEecCCCCCCCc-eEEeecccccCceeeccCCceEEEEEeccccceEEEEE
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (954)
+..+..+.|++|++ ..+.+. +.+..+...+..+.|+||++ |+..+.+. ..+||.+
T Consensus 231 ~sgs~D~~i~iw~~--~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~--~v~iW~i 286 (287)
T d1pgua2 231 ATGSLDTNIFIYSV--KRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADA--CIKRWNV 286 (287)
T ss_dssp EEEETTSCEEEEES--SCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTS--CEEEEEE
T ss_pred EeecCCCeEEEEEC--CCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECCC--eEEEEEE
Confidence 11233557899986 233333 33345667788999999975 55554433 3778764
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.53 E-value=3.7e-06 Score=91.08 Aligned_cols=153 Identities=12% Similarity=0.058 Sum_probs=87.7
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..+..++||||| .|+..+. ++.|.+||+..++. ..+..... ..++...+..++|||||
T Consensus 185 ~~~~~v~~s~dg-~lasgs~-------------Dg~i~iwd~~~~~~~~~~~~~~~-------l~~h~~~V~~l~~spdg 243 (393)
T d1sq9a_ 185 QFATSVDISERG-LIATGFN-------------NGTVQISELSTLRPLYNFESQHS-------MINNSNSIRSVKFSPQG 243 (393)
T ss_dssp CCCCEEEECTTS-EEEEECT-------------TSEEEEEETTTTEEEEEEECCC----------CCCCCEEEEEECSST
T ss_pred CcEEEEEECCCC-EEEEEeC-------------CCcEEEEeecccccccccccccc-------cccccceEEEccccccc
Confidence 445678999998 5554442 23899999986543 32222110 11233456789999999
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe-------------ecccccCceeeccCCceEEEEEecc
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-------------KLDLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-------------~~~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
+.|+.... |+ ....|.+|++ ..+.....+. .+...+..++|+|||+.|+..+.+.
T Consensus 244 ~~l~sgs~--D~--------t~~~i~lwd~--~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~ 311 (393)
T d1sq9a_ 244 SLLAIAHD--SN--------SFGCITLYET--EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 311 (393)
T ss_dssp TEEEEEEE--ET--------TEEEEEEEET--TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred ceeeeecC--CC--------Ccceeeeccc--ccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCC
Confidence 97665411 11 0124677775 2222223332 3445678899999999988776554
Q ss_pred ccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEE
Q 002194 478 TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVI 525 (954)
Q Consensus 478 ~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~ 525 (954)
. |.++|++++ +.......+...+.. ....+.|+|+|..++
T Consensus 312 ~----v~vWd~~~g--~~~~~l~gH~~~v~~--~~~~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 312 K----LRFWDVKTK--ERITTLNMHCDDIEI--EEDILAVDEHGDSLA 351 (393)
T ss_dssp E----EEEEETTTT--EEEEEEECCGGGCSS--GGGCCCBCTTSCBCS
T ss_pred E----EEEEECCCC--CEEEEECCcCCcccC--CccEEEECCCCCEEE
Confidence 3 555566665 334444444443332 112256899987653
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.51 E-value=6e-06 Score=85.72 Aligned_cols=136 Identities=16% Similarity=0.017 Sum_probs=74.8
Q ss_pred cceEEEEEeCCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC--ceEEEeccCCCccc
Q 002194 313 TTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVRELCDLPLAED 389 (954)
Q Consensus 313 ~~~l~~~~~~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g--~~~~~l~~~~~~~~ 389 (954)
..+||+++.+|+.+.+... .....++|+|||+.++..... ..+++++..+ +....+...+..
T Consensus 48 ~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-- 112 (302)
T d2p4oa1 48 VGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNA-------------DSIPVVSLVKSDGTVETLLTLPDA-- 112 (302)
T ss_dssp TTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECT-------------TSCEEEEEECTTSCEEEEEECTTC--
T ss_pred CCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCC-------------ceEEEEEecccccceeeccccCCc--
Confidence 3468899887766665544 677889999999855544322 2566666553 333444332211
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecc-c--------ccCc
Q 002194 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-L--------RYGG 460 (954)
Q Consensus 390 ~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~--------~~~~ 460 (954)
.....+++.+||+ +|..+ .....+|.++. .++......... . ....
T Consensus 113 ---------~~~n~i~~~~~g~--~~v~~-----------~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T d2p4oa1 113 ---------IFLNGITPLSDTQ--YLTAD-----------SYRGAIWLIDV---VQPSGSIWLEHPMLARSNSESVFPAA 167 (302)
T ss_dssp ---------SCEEEEEESSSSE--EEEEE-----------TTTTEEEEEET---TTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred ---------cccceeEEccCCC--EEeec-----------cccccceeeec---cCCcceeEecCCccceeeccCccccc
Confidence 1234678889985 23321 23457777774 333332221111 0 0111
Q ss_pred eeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 461 ISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 461 ~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
...+.|+..+++..... .+||+++.++.
T Consensus 168 ngi~~~~~~l~~~~~~~---~~i~~~~~~~~ 195 (302)
T d2p4oa1 168 NGLKRFGNFLYVSNTEK---MLLLRIPVDST 195 (302)
T ss_dssp EEEEEETTEEEEEETTT---TEEEEEEBCTT
T ss_pred ccccccCCceeeecCCC---CeEEecccccc
Confidence 12345677777765433 56888887764
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.50 E-value=5.7e-06 Score=86.28 Aligned_cols=217 Identities=10% Similarity=0.082 Sum_probs=120.3
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCc-cccccccceeEecCCeEEEEEecCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI-YLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~-~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.....++|||+.|+... ....|.+++.+++....+...... .++ ....+++.+||. |+++........
T Consensus 73 P~Gl~~~~dg~~l~vad---------~~~~i~~~~~~g~~~~~~~~~~~g~~~~-~pndl~~d~~G~-lyvtd~~~~~~~ 141 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVAD---------MRLGLLVVQTDGTFEEIAKKDSEGRRMQ-GCNDCAFDYEGN-LWITAPAGEVAP 141 (314)
T ss_dssp EEEEEECSSSSEEEEEE---------TTTEEEEEETTSCEEECCSBCTTSCBCB-CCCEEEECTTSC-EEEEECBCBCTT
T ss_pred ceeEEEeCCCCEEEEEE---------CCCeEEEEeCCCcEEEEEeccccccccC-CCcEEEECCCCC-EEEecCccCccc
Confidence 34578999998776643 245689999988765444332221 111 134678899996 455521111000
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-ccccccccCCCCc----
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEK---- 344 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-~~~~~~~~SpDGk---- 344 (954)
.+...........||+++.+|+...+... .....++|+||++
T Consensus 142 ---------------------------------~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~ 188 (314)
T d1pjxa_ 142 ---------------------------------ADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPY 188 (314)
T ss_dssp ---------------------------------SCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEE
T ss_pred ---------------------------------ccccceeccCCceEEEEeecCceeEeeCCcceeeeeEECCCCCccee
Confidence 00000000034568888887766665544 4445678988875
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccC-ceEE--E-eccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVR--E-LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~--~-l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~ 420 (954)
+|+++. .. ...|+.++++. +... + ....+... ..+...+++.+||+ | |...
T Consensus 189 ~lyv~d-~~-----------~~~i~~~d~~~~g~~~~~~~~~~~~~~~---------~~~pdGiavD~~Gn-l-yVa~-- 243 (314)
T d1pjxa_ 189 QLIVAE-TP-----------TKKLWSYDIKGPAKIENKKVWGHIPGTH---------EGGADGMDFDEDNN-L-LVAN-- 243 (314)
T ss_dssp EEEEEE-TT-----------TTEEEEEEEEETTEEEEEEEEEECCCCS---------SCEEEEEEEBTTCC-E-EEEE--
T ss_pred EEEEEe-ec-----------ccceEEeeccCccccceeeEEEEccccc---------cccceeeEEecCCc-E-EEEE--
Confidence 444443 21 23788888762 2221 1 11211110 01234678888886 3 3322
Q ss_pred cCCCccccccCCCeEEEEecCCCCCCCc-eEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
...+.|++++. ++++. ..+........+++|.||++.|+.....+ .+||++++...
T Consensus 244 ---------~~~g~I~~~dp---~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~---g~i~~~~~~~~ 300 (314)
T d1pjxa_ 244 ---------WGSSHIEVFGP---DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN---NAVWKFEWQRN 300 (314)
T ss_dssp ---------ETTTEEEEECT---TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT---TEEEEEECSSC
T ss_pred ---------cCCCEEEEEeC---CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCC---CcEEEEECCCC
Confidence 12458999984 44544 34444444567799999999887765433 57999987653
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=4.2e-06 Score=87.29 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=35.6
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeec--ccCCCccccccccceeEecCCeEEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
.+..++|||||++||..+ .++...||-++......... ..+.. .+..++|+|++..++++
T Consensus 13 ~I~~l~fsp~~~~L~s~s-------~Dg~v~iwd~~~~~~~~~~~~~~~h~~-----~V~~v~f~~~~~~~l~s 74 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITS-------WDGSLTVYKFDIQAKNVDLLQSLRYKH-----PLLCCNFIDNTDLQIYV 74 (342)
T ss_dssp CEEEEEEEGGGTEEEEEE-------TTSEEEEEEEETTTTEEEEEEEEECSS-----CEEEEEEEESSSEEEEE
T ss_pred CEEEEEEeCCCCEEEEEE-------CCCeEEEEEccCCCcceEEEEecCCCC-----CEEEEEEeCCCCCEEEE
Confidence 689999999999998865 34455555444322221111 11222 26789999876544433
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=98.50 E-value=4.7e-07 Score=93.34 Aligned_cols=83 Identities=13% Similarity=-0.037 Sum_probs=63.1
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC-
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP- 781 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p- 781 (954)
.+...|+++||.|+.. +..|+|... .....+++.++++++.+.-. .++|.|+||||||.++.+++.++|
T Consensus 51 ~~~~~L~~~Gy~v~~~---d~~g~g~~d-----~~~sae~la~~i~~v~~~~g--~~kV~lVGhS~GG~~a~~~l~~~p~ 120 (317)
T d1tcaa_ 51 NWIPLSTQLGYTPCWI---SPPPFMLND-----TQVNTEYMVNAITALYAGSG--NNKLPVLTWSQGGLVAQWGLTFFPS 120 (317)
T ss_dssp THHHHHHTTTCEEEEE---CCTTTTCSC-----HHHHHHHHHHHHHHHHHHTT--SCCEEEEEETHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCeEEEe---cCCCCCCCc-----hHhHHHHHHHHHHHHHHhcc--CCceEEEEeCchHHHHHHHHHHCCC
Confidence 4677889999999994 444555432 24445677888888877632 358999999999999999999887
Q ss_pred --CcccEEEEeccCCC
Q 002194 782 --HLFCCGIARSGAYN 795 (954)
Q Consensus 782 --~~~~a~v~~~~~~~ 795 (954)
++++.+|.+++.+.
T Consensus 121 ~~~~V~~~v~i~~~~~ 136 (317)
T d1tcaa_ 121 IRSKVDRLMAFAPDYK 136 (317)
T ss_dssp GTTTEEEEEEESCCTT
T ss_pred cchheeEEEEeCCCCC
Confidence 46889999988654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.49 E-value=9.4e-06 Score=84.61 Aligned_cols=247 Identities=14% Similarity=0.133 Sum_probs=129.1
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
...|+|.|||+ |+|+.... ........+|+++++++++...+..............+.+.+||.+|+++.
T Consensus 20 ~EGpa~d~dG~-ly~~~~~~-~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad-------- 89 (314)
T d1pjxa_ 20 AEGPVFDKNGD-FYIVAPEV-EVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-------- 89 (314)
T ss_dssp CEEEEECTTSC-EEEEETTC-EETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE--------
T ss_pred CeEeEEeCCCC-EEEEECcc-ccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEE--------
Confidence 45689999997 56654211 000111357999999988765543222111111123688999998888661
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcC-CC------ccccccccCCCC
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIG-PP------AVYTSLDPSPDE 343 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~-~~------~~~~~~~~SpDG 343 (954)
....|.+++.+|....+. .. .....+++.|||
T Consensus 90 -----------------------------------------~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G 128 (314)
T d1pjxa_ 90 -----------------------------------------MRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEG 128 (314)
T ss_dssp -----------------------------------------TTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTS
T ss_pred -----------------------------------------CCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCC
Confidence 123477788855443332 11 123457899999
Q ss_pred cEEEEEeecCCc---ccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC---ceEEE
Q 002194 344 KYILISSIHRPY---SFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS---TLYWA 417 (954)
Q Consensus 344 k~l~~~s~~~~~---~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~---i~~~~ 417 (954)
+. .++...... ..........+.++.++.+++..+..... .....++|+||++. .+|..
T Consensus 129 ~l-yvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~--------------~~pNGi~~~~d~d~~~~~lyv~ 193 (314)
T d1pjxa_ 129 NL-WITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAF--------------QFPNGIAVRHMNDGRPYQLIVA 193 (314)
T ss_dssp CE-EEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEE--------------SSEEEEEEEECTTSCEEEEEEE
T ss_pred CE-EEecCccCcccccccceeccCCceEEEEeecCceeEeeCCc--------------ceeeeeEECCCCCcceeEEEEE
Confidence 64 444322110 00000111234677777776544333221 12346889998763 23442
Q ss_pred EeccCCCccccccCCCeEEEEecCCCCCCCc--eE-Eeec----ccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP--EI-LHKL----DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~--~~-l~~~----~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+ .....|+.++++ ..+.. ++ +... .....++++..+|+ |+.+.+.. .+|+++++++
T Consensus 194 d-----------~~~~~i~~~d~~--~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~---g~I~~~dp~~ 256 (314)
T d1pjxa_ 194 E-----------TPTKKLWSYDIK--GPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGS---SHIEVFGPDG 256 (314)
T ss_dssp E-----------TTTTEEEEEEEE--ETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETT---TEEEEECTTC
T ss_pred e-----------ecccceEEeecc--CccccceeeEEEEccccccccceeeEEecCCc-EEEEEcCC---CEEEEEeCCC
Confidence 2 234578888751 12222 11 1111 11234578888887 44443333 5799999987
Q ss_pred CCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 491 ~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+ ........+.....+ ++|.||++.|+...
T Consensus 257 g--~~~~~i~~p~~~~t~------~afg~d~~~lyVt~ 286 (314)
T d1pjxa_ 257 G--QPKMRIRCPFEKPSN------LHFKPQTKTIFVTE 286 (314)
T ss_dssp B--SCSEEEECSSSCEEE------EEECTTSSEEEEEE
T ss_pred C--EEEEEEECCCCCEEE------EEEeCCCCEEEEEE
Confidence 5 222222222222122 78899998876654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=7.8e-07 Score=91.58 Aligned_cols=157 Identities=11% Similarity=0.059 Sum_probs=84.8
Q ss_pred eEEEEEe-CCceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCcc
Q 002194 315 QLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIA 393 (954)
Q Consensus 315 ~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~ 393 (954)
.+..++. +++....... .....+++|+++.+++..... +.+.+|++...........+
T Consensus 102 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~------------~~v~~~~~~~~~~~~~~~~~-------- 160 (287)
T d1pgua2 102 DLLILQSFTGDIIKSVRL-NSPGSAVSLSQNYVAVGLEEG------------NTIQVFKLSDLEVSFDLKTP-------- 160 (287)
T ss_dssp EEEEEETTTCCEEEEEEC-SSCEEEEEECSSEEEEEETTT------------SCEEEEETTEEEEEEECSSC--------
T ss_pred cceeeeccceeeeeeccc-cceeeeeeccCcceeeecccc------------ceeeeeeccccceeeeeeec--------
Confidence 3555665 5543222111 122346788899988877432 26788988744332221111
Q ss_pred ccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCce--EEeecccccCceeeccCCc---
Q 002194 394 FNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE--ILHKLDLRYGGISWCDDSL--- 468 (954)
Q Consensus 394 ~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~--~l~~~~~~~~~~~~spDg~--- 468 (954)
....+..++|+|||+.++.. +..+.|.+|++ ..++.. .+..+...+..++|+|+++
T Consensus 161 ---~~~~v~~~~~s~~~~~l~~g-------------~~dg~i~i~d~---~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 221 (287)
T d1pgua2 161 ---LRAKPSYISISPSETYIAAG-------------DVMGKILLYDL---QSREVKTSRWAFRTSKINAISWKPAEKGAN 221 (287)
T ss_dssp ---CSSCEEEEEECTTSSEEEEE-------------ETTSCEEEEET---TTTEEEECCSCCCSSCEEEEEECCCC----
T ss_pred ---cCCceeEEEeccCccccccc-------------cccccccceee---cccccccccccccccccceeeecccccccc
Confidence 11234678999999976655 34557889986 333221 1233455567788887654
Q ss_pred -------eEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCc
Q 002194 469 -------ALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGT 522 (954)
Q Consensus 469 -------~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~ 522 (954)
.|+..+.+. .|+++++..+ .+.......+...+.. +.|+||++
T Consensus 222 ~~~~~~~~l~sgs~D~----~i~iw~~~~~-~~~~~~~~~h~~~V~~------v~~~~~~~ 271 (287)
T d1pgua2 222 EEEIEEDLVATGSLDT----NIFIYSVKRP-MKIIKALNAHKDGVNN------LLWETPST 271 (287)
T ss_dssp --CCSCCEEEEEETTS----CEEEEESSCT-TCCEEETTSSTTCEEE------EEEEETTE
T ss_pred cccCCCCeeEeecCCC----eEEEEECCCC-CeEEEEeCCCCCCeEE------EEECCCCE
Confidence 454443332 2444555443 2333444444444444 78899875
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=8.3e-08 Score=109.25 Aligned_cols=128 Identities=20% Similarity=0.176 Sum_probs=87.7
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC-CCCCCcc
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI-IGEGDEE 730 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~-~G~G~~~ 730 (954)
|...||.|+..... .++|++||+|||.|..+.. +.+. + ...++.++.+||..+||-. .|+-...
T Consensus 97 L~LnI~~P~~~~~~--~~lPV~v~ihGG~~~~gs~--------~~~~--~---~~~~~~~~vIvVt~nYRLg~~GFl~~~ 161 (532)
T d2h7ca1 97 LYLNIYTPADLTKK--NRLPVMVWIHGGGLMVGAA--------STYD--G---LALAAHENVVVVTIQYRLGIWGFFSTG 161 (532)
T ss_dssp CEEEEEECSCTTSC--CCEEEEEEECCSTTTSCCS--------TTSC--C---HHHHHHHTCEEEEECCCCHHHHHCCCS
T ss_pred CEEEEEECCCCCCC--CCcEEEEEEeCCccccccc--------ccCC--c---hhhhhcCceEEEEEeeccCCCcccccc
Confidence 56677889754333 3599999999997654332 2221 1 2345778999999888522 2321111
Q ss_pred cchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--CCCcccEEEEeccCC
Q 002194 731 ANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAY 794 (954)
Q Consensus 731 ~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~ 794 (954)
.........+.|...|++|++++ -.-||++|-|+|+|+||..+..++.. ...+|+.+|+.+|..
T Consensus 162 ~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~ 230 (532)
T d2h7ca1 162 DEHSRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVA 230 (532)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCT
T ss_pred ccccccccccHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhcccc
Confidence 11112245789999999999986 23699999999999999998887764 335899999999753
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.48 E-value=2.3e-06 Score=92.69 Aligned_cols=115 Identities=9% Similarity=-0.069 Sum_probs=74.1
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..+..++|||||++|+..+.+.. ...+.+||++.++ ...+............+.++...+..++|+|||
T Consensus 232 ~~V~~l~~spdg~~l~sgs~D~t----------~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~ 301 (393)
T d1sq9a_ 232 NSIRSVKFSPQGSLLAIAHDSNS----------FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 301 (393)
T ss_dssp CCEEEEEECSSTTEEEEEEEETT----------EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred ceEEEcccccccceeeeecCCCC----------cceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCC
Confidence 56788999999999999885532 1258899998554 444443222222222344566678899999999
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccC----ceeeccCCceEE
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYG----GISWCDDSLALV 471 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~----~~~~spDg~~l~ 471 (954)
+.|+-. +..+.|.+||+ .++.....+..+...+. .++|+|+|..++
T Consensus 302 ~~l~S~-------------s~D~~v~vWd~--~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 302 ETLCSA-------------GWDGKLRFWDV--KTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 351 (393)
T ss_dssp SEEEEE-------------ETTSEEEEEET--TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred CeeEEE-------------CCCCEEEEEEC--CCCCEEEEECCcCCcccCCccEEEECCCCCEEE
Confidence 866544 44668999997 33433445555554443 478999998775
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.47 E-value=6.2e-08 Score=110.13 Aligned_cols=132 Identities=20% Similarity=0.274 Sum_probs=86.0
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC-CCCCCcc
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI-IGEGDEE 730 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~-~G~G~~~ 730 (954)
|...||.|+.....+ ++|+|||+|||.|..+... .+..........++.++++||..+||-. .|+-...
T Consensus 98 L~LnI~~P~~~~~~~--~~PVlv~ihGG~f~~g~~~--------~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~ 167 (534)
T d1llfa_ 98 LTINVVRPPGTKAGA--NLPVMLWIFGGGFEIGSPT--------IFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGD 167 (534)
T ss_dssp CEEEEEECTTCCTTC--CEEEEEEECCSTTTSCCGG--------GSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSH
T ss_pred CEEEEEECCCCCCCC--CCeEEEEECCCccccCCCC--------CCCchhccchhhhccCCeEEEEeecCCCcccccCCc
Confidence 677889997644433 4999999999976544321 1211111111234468999999888522 2221110
Q ss_pred --cchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh-----CC---CcccEEEEeccC
Q 002194 731 --ANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH-----AP---HLFCCGIARSGA 793 (954)
Q Consensus 731 --~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~-----~p---~~~~a~v~~~~~ 793 (954)
.....+...+.|+..|++|++++ -.-||++|-|+|+|+||..+...+.. .| .+|+.+|+.+|.
T Consensus 168 ~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs 243 (534)
T d1llfa_ 168 DIKAEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp HHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred ccccccccccchhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCc
Confidence 01112346789999999999986 23699999999999999988766542 11 369999999974
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.46 E-value=5.9e-08 Score=110.52 Aligned_cols=130 Identities=22% Similarity=0.304 Sum_probs=86.9
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHH-HHHH-HHCCcEEEEcCCC-CCCCCCC
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTS-VLLW-LARGFAILGGPTT-PIIGEGD 728 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l-a~~G~~V~~~~~~-~~~G~G~ 728 (954)
|+..||.|++...++ ++|++||+|||.|..+.... +. +..+ ...+ +.++++||..+|| +..|+-.
T Consensus 106 L~LnI~~P~~~~~~~--~lPV~V~ihGG~f~~G~~~~--------~~--~~~~~~~~~~~~~~vIvVt~nYRlg~~Gfl~ 173 (544)
T d1thga_ 106 LYLNVFRPAGTKPDA--KLPVMVWIYGGAFVYGSSAA--------YP--GNSYVKESINMGQPVVFVSINYRTGPFGFLG 173 (544)
T ss_dssp CEEEEEEETTCCTTC--CEEEEEEECCCTTCCSGGGG--------CC--SHHHHHHHHHTTCCCEEEEECCCCHHHHHCC
T ss_pred CEEEEEECCCCCCCC--CCCEEEEeccCCCccCCCcc--------CC--cchhhhhhhhccCCeEEEecccccccccccC
Confidence 677788897655544 49999999999776553211 11 1111 2223 4578899997775 2222211
Q ss_pred c--ccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--------CCcccEEEEeccC
Q 002194 729 E--EANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--------PHLFCCGIARSGA 793 (954)
Q Consensus 729 ~--~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~~~ 793 (954)
. ..........+.|+..|++|++++ -.-||++|-|+|+|+||..+..++... ..+|+.+|+.+|.
T Consensus 174 ~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~ 251 (544)
T d1thga_ 174 GDAITAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp SHHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred CchhhccccccHHHHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhccccccccc
Confidence 1 001112356789999999999986 236999999999999999888776532 2489999999974
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.40 E-value=1.8e-07 Score=105.70 Aligned_cols=129 Identities=17% Similarity=0.170 Sum_probs=84.5
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH-HCCcEEEEcCCCC-CCCCCCc
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTP-IIGEGDE 729 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~-~~G~G~~ 729 (954)
|...||.|+..... .++|++||+|||.|..+.. ..+. + ....++ ..+++||..+||- ..|+=..
T Consensus 81 L~LnI~~P~~~~~~--~~~PV~v~ihGG~~~~G~~--------~~~~--~--~~~~~~~~~~vVvVt~nYRlg~~GFl~~ 146 (517)
T d1ukca_ 81 LFINVFKPSTATSQ--SKLPVWLFIQGGGYAENSN--------ANYN--G--TQVIQASDDVIVFVTFNYRVGALGFLAS 146 (517)
T ss_dssp CEEEEEEETTCCTT--CCEEEEEEECCSTTTSCCS--------CSCC--C--HHHHHHTTSCCEEEEECCCCHHHHHCCC
T ss_pred CEEEEEeCCCCCCC--CCceEEEEEcCCccccCCC--------cccc--c--hhhhhhhccccceEEEEecccceeecCc
Confidence 56677888753333 3599999999997665432 2221 1 122233 4667888877752 2222111
Q ss_pred cc--chhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh----CCCcccEEEEeccCC
Q 002194 730 EA--NDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH----APHLFCCGIARSGAY 794 (954)
Q Consensus 730 ~~--~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~----~p~~~~a~v~~~~~~ 794 (954)
.. ........+.|+..|++|++++ -.-||++|-|+|+|+||..+...+.. ...+|+.+|+.+|..
T Consensus 147 ~~~~~~~~~N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~ 220 (517)
T d1ukca_ 147 EKVRQNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFW 220 (517)
T ss_dssp HHHHHSSCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCC
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeeccccc
Confidence 00 0112256789999999999986 23699999999999999988765543 224899999999854
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.40 E-value=1.6e-05 Score=83.07 Aligned_cols=240 Identities=12% Similarity=0.002 Sum_probs=129.2
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
...|+|.+||+ |+|+.. ....|+++++++++........... ...+++++||++++.......
T Consensus 42 lEG~~~D~~G~-Ly~~D~--------~~g~I~ri~p~g~~~~~~~~~~~~~----p~gla~~~dG~l~va~~~~~~---- 104 (319)
T d2dg1a1 42 LEGLNFDRQGQ-LFLLDV--------FEGNIFKINPETKEIKRPFVSHKAN----PAAIKIHKDGRLFVCYLGDFK---- 104 (319)
T ss_dssp EEEEEECTTSC-EEEEET--------TTCEEEEECTTTCCEEEEEECSSSS----EEEEEECTTSCEEEEECTTSS----
T ss_pred cEeCEECCCCC-EEEEEC--------CCCEEEEEECCCCeEEEEEeCCCCC----eeEEEECCCCCEEEEecCCCc----
Confidence 35699999997 777531 3568999999987655443222211 457889999986664410000
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC----ccccccccCCCCcE
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----AVYTSLDPSPDEKY 345 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~----~~~~~~~~SpDGk~ 345 (954)
....++.++. ++....+... .......+.|||+
T Consensus 105 -----------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~- 142 (319)
T d2dg1a1 105 -----------------------------------------STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG- 142 (319)
T ss_dssp -----------------------------------------SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-
T ss_pred -----------------------------------------cceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-
Confidence 1234556665 4443333322 3345678999997
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
|+++...... .+-...++.++.+++..+.+...- ...+.++|+|||+.+++. +
T Consensus 143 l~vtd~~~~~------~~~~g~v~~~~~dg~~~~~~~~~~-------------~~pnGia~s~dg~~lyva-d------- 195 (319)
T d2dg1a1 143 FYFTDFRGYS------TNPLGGVYYVSPDFRTVTPIIQNI-------------SVANGIALSTDEKVLWVT-E------- 195 (319)
T ss_dssp EEEEECCCBT------TBCCEEEEEECTTSCCEEEEEEEE-------------SSEEEEEECTTSSEEEEE-E-------
T ss_pred eeeccccccc------ccCcceeEEEecccceeEEEeecc-------------ceeeeeeeccccceEEEe-c-------
Confidence 4444322110 011236777787877666554310 123568999999866554 2
Q ss_pred cccccCCCeEEEEecCCCCCCCceEEee----c---ccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002194 426 KVEVTPRDIIYTQQAEPVQGEGPEILHK----L---DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~----~---~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 498 (954)
...+.|+.++++ .++........ . .....++++..||+ |+.+.+.. .+|++++.++. ....
T Consensus 196 ----~~~~~I~~~d~~-~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~---g~V~~~~p~G~---~l~~ 263 (319)
T d2dg1a1 196 ----TTANRLHRIALE-DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQ---GRVLVFNKRGY---PIGQ 263 (319)
T ss_dssp ----GGGTEEEEEEEC-TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETT---TEEEEECTTSC---EEEE
T ss_pred ----ccCCceEEEEEc-CCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCC---CEEEEECCCCc---EEEE
Confidence 224578888862 12222222111 1 11234578888887 44444433 47999998753 2222
Q ss_pred ecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
...+............+.|.+++..++...
T Consensus 264 i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 264 ILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp EECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred EeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence 222211100000011156777777666554
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.40 E-value=1.6e-07 Score=105.38 Aligned_cols=128 Identities=23% Similarity=0.183 Sum_probs=86.0
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC-CCCCC--
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI-IGEGD-- 728 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~-~G~G~-- 728 (954)
|+..||.|+. +. .++|++||+|||.+..+....... ......+..+++||.++||-. .|+=.
T Consensus 82 L~lni~~P~~--~~--~~lPV~v~ihGG~~~~g~~~~~~~-----------~~~~~~~~~~vVvV~~nYRlg~~GFl~~~ 146 (483)
T d1qe3a_ 82 LYVNVFAPDT--PS--QNLPVMVWIHGGAFYLGAGSEPLY-----------DGSKLAAQGEVIVVTLNYRLGPFGFLHLS 146 (483)
T ss_dssp CEEEEEEECS--SC--CSEEEEEEECCSTTTSCCTTSGGG-----------CCHHHHHHHTCEEEEECCCCHHHHSCCCT
T ss_pred CEEEEEECCC--CC--CCCceEEEEeecccccCCcccccc-----------ccccccccCceEEEeecccccchhhcccc
Confidence 6778888964 22 349999999999765443222111 012234556799999888522 22210
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--CCcccEEEEeccCC
Q 002194 729 EEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAY 794 (954)
Q Consensus 729 ~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~ 794 (954)
.......+...+.|+..|++|++++ -.-||++|-|+|+|+||..+..++... ..+|+.+|+.+|..
T Consensus 147 ~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 217 (483)
T d1qe3a_ 147 SFDEAYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS 217 (483)
T ss_dssp TTCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence 0001112346789999999999986 236999999999999999988877542 25899999999853
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.39 E-value=1.4e-05 Score=83.53 Aligned_cols=145 Identities=11% Similarity=0.042 Sum_probs=82.8
Q ss_pred ceEEEEEe-CCceeE-cCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccC
Q 002194 314 TQLVLVSL-DGTVKE-IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (954)
Q Consensus 314 ~~l~~~~~-~G~~~~-l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~ 390 (954)
.+|++++. ++.... +... .....+++++||+.++....... ....+...+..++....+......
T Consensus 61 g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~~--- 128 (319)
T d2dg1a1 61 GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFK---------STGGIFAATENGDNLQDIIEDLST--- 128 (319)
T ss_dssp CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSS---------SCCEEEEECTTSCSCEEEECSSSS---
T ss_pred CEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCc---------cceeEEEEcCCCceeeeeccCCCc---
Confidence 46888888 443332 3233 55667899999986654331110 112455555555554443322111
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceE
Q 002194 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (954)
Q Consensus 391 p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l 470 (954)
......+++.+||+ + |+.+.. + ......+.++.++. +++..+.+...-....+++|+|||+.|
T Consensus 129 -------~~~~nd~~~d~~G~-l-~vtd~~-~----~~~~~~g~v~~~~~---dg~~~~~~~~~~~~pnGia~s~dg~~l 191 (319)
T d2dg1a1 129 -------AYCIDDMVFDSKGG-F-YFTDFR-G----YSTNPLGGVYYVSP---DFRTVTPIIQNISVANGIALSTDEKVL 191 (319)
T ss_dssp -------CCCEEEEEECTTSC-E-EEEECC-C----BTTBCCEEEEEECT---TSCCEEEEEEEESSEEEEEECTTSSEE
T ss_pred -------ccCCcceeEEeccc-e-eecccc-c----ccccCcceeEEEec---ccceeEEEeeccceeeeeeeccccceE
Confidence 12335688999996 3 332211 1 11123456888874 666666665554455779999999998
Q ss_pred EEEEeccccceEEEEEcCCC
Q 002194 471 VYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~ 490 (954)
+++.... .+||+++++.
T Consensus 192 yvad~~~---~~I~~~d~~~ 208 (319)
T d2dg1a1 192 WVTETTA---NRLHRIALED 208 (319)
T ss_dssp EEEEGGG---TEEEEEEECT
T ss_pred EEecccC---CceEEEEEcC
Confidence 8875433 4688887654
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.35 E-value=2e-07 Score=106.17 Aligned_cols=127 Identities=21% Similarity=0.241 Sum_probs=85.3
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC----CCCCC
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP----IIGEG 727 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~----~~G~G 727 (954)
|...||.|.. ... .++|++||+|||.+..+........ + ....+..+++||..+||- +...+
T Consensus 97 L~LnI~~P~~-~~~--~~lPV~v~ihGG~~~~gs~~~~~~~--------~---~~~~~~~~vvvVt~nYRlg~~Gfl~~~ 162 (542)
T d2ha2a1 97 LYLNVWTPYP-RPA--SPTPVLIWIYGGGFYSGAASLDVYD--------G---RFLAQVEGAVLVSMNYRVGTFGFLALP 162 (542)
T ss_dssp CEEEEEEESS-CCS--SCEEEEEEECCSTTTCCCTTSGGGC--------T---HHHHHHHCCEEEEECCCCHHHHHCCCT
T ss_pred CEEEEEecCC-CCC--CCCcEEEEEEECccccccCcccccC--------c---hhhhhhccceeEeeeeeccceeeeccc
Confidence 5667788864 222 3499999999997654433222111 1 123345799999988862 22222
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--CCcccEEEEeccCC
Q 002194 728 DEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAY 794 (954)
Q Consensus 728 ~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~ 794 (954)
.. ....+...+.|+..|++|++++ -.-||++|-|+|+|+||..+..++... ..+|..+|+.++..
T Consensus 163 ~~--~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~ 232 (542)
T d2ha2a1 163 GS--REAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (542)
T ss_dssp TC--SSCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred cc--ccCCCcCCcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecccc
Confidence 11 1112245688999999999986 236999999999999999998877643 25899999998854
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.34 E-value=2.5e-07 Score=105.13 Aligned_cols=129 Identities=17% Similarity=0.165 Sum_probs=86.2
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC-CCCCCCcc
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP-IIGEGDEE 730 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~-~~G~G~~~ 730 (954)
|...||.|+. . ..++|++||+|||.+..+........ ....++..+++||..+||- ..|+-...
T Consensus 92 L~LnI~~P~~--~--~~~lPV~v~ihGG~~~~g~~~~~~~~-----------~~~~~~~~~vvvVt~nYRlg~~GFl~~~ 156 (532)
T d1ea5a_ 92 LYLNIWVPSP--R--PKSTTVMVWIYGGGFYSGSSTLDVYN-----------GKYLAYTEEVVLVSLSYRVGAFGFLALH 156 (532)
T ss_dssp CEEEEEECSS--C--CSSEEEEEEECCSTTTCCCTTCGGGC-----------THHHHHHHTCEEEECCCCCHHHHHCCCT
T ss_pred CEEEEEeCCC--C--CCCCcEEEEEEcCCcccccCCccccC-----------cchhhcccCccEEEEeeccccccccccc
Confidence 5667788864 1 22499999999997655433222111 1223567899999988853 22221110
Q ss_pred -cchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--CCcccEEEEeccCCC
Q 002194 731 -ANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (954)
Q Consensus 731 -~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~ 795 (954)
.....+...+.|...|++|++++ -.-||++|-|+|+|+||..+..++... ..+|..+|+.++...
T Consensus 157 ~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~~ 227 (532)
T d1ea5a_ 157 GSQEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN 227 (532)
T ss_dssp TCSSSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred cccCCCCcccchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeeccccc
Confidence 11112234689999999999986 236999999999999999988776532 258999999987543
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.33 E-value=2e-07 Score=106.87 Aligned_cols=135 Identities=18% Similarity=0.132 Sum_probs=84.1
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCC-CCCCCCc
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTP-IIGEGDE 729 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~-~~G~G~~ 729 (954)
|...||.|...... ..++|++||+|||.|..+...........-+. ...+++ .+++||..+||- ..|+-..
T Consensus 81 L~LNI~~P~~~~~~-~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~d------g~~la~~~~vIvVt~nYRlg~~GFl~~ 153 (579)
T d2bcea_ 81 LYLNIWVPQGRKEV-SHDLPVMIWIYGGAFLMGASQGANFLSNYLYD------GEEIATRGNVIVVTFNYRVGPLGFLST 153 (579)
T ss_dssp CEEEEEEEECSSSC-CCSEEEEEECCCCSEEEC-------CTTGGGC------CHHHHHHHTCEEEEECCCCHHHHHCCC
T ss_pred CEEEEEECCCCCCC-CCCCcEEEEECCCcccCCCCCCcccCCccccc------hhhhhccCCEEEEeecccccccccccc
Confidence 66678888653221 23599999999997654433221111000011 124454 568888877752 2222111
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--CCCcccEEEEeccC
Q 002194 730 EANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGA 793 (954)
Q Consensus 730 ~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~ 793 (954)
......+...+.|...|++|++++ -.-||++|-|+|+|+||..+..++.. ...+|+.+|+.+|.
T Consensus 154 ~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs 222 (579)
T d2bcea_ 154 GDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp SSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred cccCCCccchhhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCC
Confidence 011112345789999999999986 23699999999999999998876653 34689999999974
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.31 E-value=1.2e-06 Score=89.74 Aligned_cols=78 Identities=18% Similarity=0.087 Sum_probs=56.3
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc
Q 002194 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL 783 (954)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~ 783 (954)
....|.++||.|+.++. .|+|..+ ...+++.+.++.+.+.. ..+++.++||||||.++..++.++|++
T Consensus 31 i~~~L~~~G~~v~~~~~---~~~~~~~-------~~a~~l~~~i~~~~~~~--g~~~v~ligHS~GG~~~r~~~~~~p~~ 98 (285)
T d1ex9a_ 31 IPSALRRDGAQVYVTEV---SQLDTSE-------VRGEQLLQQVEEIVALS--GQPKVNLIGHSHGGPTIRYVAAVRPDL 98 (285)
T ss_dssp HHHHHHHTTCCEEEECC---CSSSCHH-------HHHHHHHHHHHHHHHHH--CCSCEEEEEETTHHHHHHHHHHHCGGG
T ss_pred HHHHHHhCCCEEEEeCC---CCCCCcH-------HHHHHHHHHHHHHHHHc--CCCeEEEEEECccHHHHHHHHHHCCcc
Confidence 56788899999999444 4555432 12233334444444332 346899999999999999999999999
Q ss_pred ccEEEEeccC
Q 002194 784 FCCGIARSGA 793 (954)
Q Consensus 784 ~~a~v~~~~~ 793 (954)
++.+|.++..
T Consensus 99 v~~lv~i~tP 108 (285)
T d1ex9a_ 99 IASATSVGAP 108 (285)
T ss_dssp EEEEEEESCC
T ss_pred ceeEEEECCC
Confidence 9999998865
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=0.00041 Score=71.58 Aligned_cols=115 Identities=12% Similarity=0.018 Sum_probs=63.4
Q ss_pred CceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEE
Q 002194 459 GGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYI 538 (954)
Q Consensus 459 ~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~ 538 (954)
....+++|+..|+..+.++. |.++++..+ +.......+...+ ..+++++++++....
T Consensus 179 ~~~~~~~~~~~l~s~~~dg~----i~~~d~~~~--~~~~~~~~~~~~v--------~~~~~~~~~l~s~s~--------- 235 (342)
T d2ovrb2 179 RVYSLQFDGIHVVSGSLDTS----IRVWDVETG--NCIHTLTGHQSLT--------SGMELKDNILVSGNA--------- 235 (342)
T ss_dssp CEEEEEECSSEEEEEETTSC----EEEEETTTC--CEEEEECCCCSCE--------EEEEEETTEEEEEET---------
T ss_pred ccccccCCCCEEEEEeCCCe----EEEeecccc--eeeeEecccccce--------eEEecCCCEEEEEcC---------
Confidence 34567788998887765432 555566554 2233332222211 345667777666541
Q ss_pred EEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002194 539 LLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (954)
Q Consensus 539 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~ 618 (954)
...|++||+...+.......... .... ...++++++.++.... -..+.+|++.+
T Consensus 236 ------------d~~i~iwd~~~~~~~~~~~~~~~----~~~~------~~~~~~~~~~~~s~s~----Dg~i~iwd~~t 289 (342)
T d2ovrb2 236 ------------DSTVKIWDIKTGQCLQTLQGPNK----HQSA------VTCLQFNKNFVITSSD----DGTVKLWDLKT 289 (342)
T ss_dssp ------------TSCEEEEETTTCCEEEEECSTTS----CSSC------EEEEEECSSEEEEEET----TSEEEEEETTT
T ss_pred ------------CCEEEEEecccccccccccccce----eeec------eeecccCCCeeEEEcC----CCEEEEEECCC
Confidence 23499999988876655443311 0000 1234556665543322 35799999988
Q ss_pred Ccee
Q 002194 619 KKSC 622 (954)
Q Consensus 619 g~~~ 622 (954)
|+..
T Consensus 290 g~~i 293 (342)
T d2ovrb2 290 GEFI 293 (342)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 8753
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=5.3e-07 Score=102.21 Aligned_cols=128 Identities=19% Similarity=0.206 Sum_probs=85.0
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC-CCCCCc-
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI-IGEGDE- 729 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~-~G~G~~- 729 (954)
|...||.|.. .. .++|++||+|||.+..+.......+ + ....+..+++||..+||-. .|+-..
T Consensus 90 L~lnI~~P~~--~~--~~~PV~v~ihGG~~~~gs~~~~~~~--------~---~~~~~~~~vVvVt~nYRlg~~Gfl~~~ 154 (526)
T d1p0ia_ 90 LYLNVWIPAP--KP--KNATVLIWIYGGGFQTGTSSLHVYD--------G---KFLARVERVIVVSMNYRVGALGFLALP 154 (526)
T ss_dssp CEEEEEEESS--CC--SSEEEEEEECCSTTTSCCTTCGGGC--------T---HHHHHHHCCEEEEECCCCHHHHHCCCT
T ss_pred CEEEEEeCCC--CC--CCCceEEEEECCCcccccCcccccC--------c---cccccccceeEEecccccccccccCCC
Confidence 5667788864 22 2489999999997665543322111 1 1223467999999777522 221110
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--CCCcccEEEEeccCC
Q 002194 730 EANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAY 794 (954)
Q Consensus 730 ~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~ 794 (954)
......+...+.|...|++|++++ -.-||++|-|+|+|+||..+..++.. ...+|+.+|+.++..
T Consensus 155 ~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~ 224 (526)
T d1p0ia_ 155 GNPEAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 224 (526)
T ss_dssp TCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred CcccccccccccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhcccccc
Confidence 011122345789999999999886 23699999999999999998776653 225799999988754
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.24 E-value=6.3e-05 Score=77.31 Aligned_cols=225 Identities=8% Similarity=0.025 Sum_probs=132.5
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCC
Q 002194 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (954)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (954)
..|.|.++...|+|+-- ....|+.+|+++++.+.. ..+.. +..+++.+||++++..
T Consensus 21 Egp~wd~~~~~l~wvDi--------~~~~I~r~d~~~g~~~~~-~~~~~-----~~~i~~~~dg~l~va~---------- 76 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNI--------LERELHELHLASGRKTVH-ALPFM-----GSALAKISDSKQLIAS---------- 76 (295)
T ss_dssp EEEEEETTTTEEEEEEG--------GGTEEEEEETTTTEEEEE-ECSSC-----EEEEEEEETTEEEEEE----------
T ss_pred eCCeEECCCCEEEEEEC--------CCCEEEEEECCCCeEEEE-ECCCC-----cEEEEEecCCCEEEEE----------
Confidence 35999998888999642 257899999999876543 23332 5578888999877754
Q ss_pred CCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC------ccccccccCCCCc
Q 002194 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP------AVYTSLDPSPDEK 344 (954)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~------~~~~~~~~SpDGk 344 (954)
...|+++|. +|+.+.+... ....+..+.|+|+
T Consensus 77 -----------------------------------------~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~ 115 (295)
T d2ghsa1 77 -----------------------------------------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA 115 (295)
T ss_dssp -----------------------------------------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC
T ss_pred -----------------------------------------eCccEEeecccceeeEEeeeecCCCcccceeeEECCCCC
Confidence 124888898 7877766432 2456778999997
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
..+-...... ....-.++.+..++.+.+...- .....+.|++|++.+++. +
T Consensus 116 iw~~~~~~~~---------~~~~g~l~~~~~g~~~~~~~~~-------------~~~Ng~~~s~d~~~l~~~-d------ 166 (295)
T d2ghsa1 116 LWIGTMGRKA---------ETGAGSIYHVAKGKVTKLFADI-------------SIPNSICFSPDGTTGYFV-D------ 166 (295)
T ss_dssp EEEEEEETTC---------CTTCEEEEEEETTEEEEEEEEE-------------SSEEEEEECTTSCEEEEE-E------
T ss_pred EEEEeccccc---------cccceeEeeecCCcEEEEeecc-------------CCcceeeecCCCceEEEe-e------
Confidence 5444332211 1123445555555555444310 122468999999976554 2
Q ss_pred ccccccCCCeEEEEecCCCCC---CCceEEee---cccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002194 425 AKVEVTPRDIIYTQQAEPVQG---EGPEILHK---LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g---~~~~~l~~---~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 498 (954)
+..+.||.+++++..+ ++...... ......+++...+|. |+.+.+.. .+|++++.++. ....
T Consensus 167 -----t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~---g~V~~~dp~G~---~~~~ 234 (295)
T d2ghsa1 167 -----TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGE---GAVDRYDTDGN---HIAR 234 (295)
T ss_dssp -----TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETT---TEEEEECTTCC---EEEE
T ss_pred -----cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeCC---CceEEecCCCc---EeeE
Confidence 2355788888633222 12222222 233345677778885 55554443 46999998763 2333
Q ss_pred ecCCCCCccCCCCCCCeeec-cCCcEEEEEE
Q 002194 499 FDRSSEDVYSDPGSPMMRRT-STGTYVIAKI 528 (954)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~s-pdG~~l~~~~ 528 (954)
...+.....+ ++|- +|++.|+.+.
T Consensus 235 i~lP~~~~T~------~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 235 YEVPGKQTTC------PAFIGPDASRLLVTS 259 (295)
T ss_dssp EECSCSBEEE------EEEESTTSCEEEEEE
T ss_pred ecCCCCceEE------EEEeCCCCCEEEEEE
Confidence 3333222222 4553 6777766654
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.23 E-value=1e-06 Score=100.78 Aligned_cols=117 Identities=20% Similarity=0.162 Sum_probs=78.8
Q ss_pred CCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCC-CCCCC---C---cc-cchhhHH
Q 002194 667 DGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTP-IIGEG---D---EE-ANDRFVE 737 (954)
Q Consensus 667 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~-~~G~G---~---~~-~~~~~~~ 737 (954)
..++|++||+|||.|..+........ ...+++ .+.+||..+||- ..|+= . +. .....+.
T Consensus 136 ~~~lPV~V~ihGG~f~~Gs~~~~~~~------------~~~l~~~~~vVvVtinYRlg~fGFl~~~~~~~~~~~~~~~gN 203 (571)
T d1dx4a_ 136 TNGLPILIWIYGGGFMTGSATLDIYN------------ADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGN 203 (571)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGC------------CHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSC
T ss_pred CCCCeEEEEEeCCCccCCCCcccccc------------hhhhhhcCCeeEEeecceeccccccccccccccccccCCCCc
Confidence 34699999999997665443222211 123444 468888877752 23321 0 00 1112235
Q ss_pred HHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--CCcccEEEEeccCCC
Q 002194 738 QLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (954)
Q Consensus 738 ~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~ 795 (954)
..+.|...|++|++++ -.-||++|-|+|+|+||..+..++... ..+|+.+|+.++...
T Consensus 204 ~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 204 VGLWDQALAIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHHHHHHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred ccchHHHHHHHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 6789999999999986 236999999999999999998777643 257999999887543
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.23 E-value=0.00045 Score=63.22 Aligned_cols=166 Identities=15% Similarity=0.143 Sum_probs=103.2
Q ss_pred eEEEEEeC--CceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCc
Q 002194 315 QLVLVSLD--GTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392 (954)
Q Consensus 315 ~l~~~~~~--G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~ 392 (954)
.||..++. |+..++..+..++-.+..-|++.|+|+....+ ...+|-++|+..+.|+..|...
T Consensus 83 ai~~~Nlk~~GEE~~i~spk~vRI~S~~yddk~vvF~Gased------------~~~LYviegGklrkL~~vPpFs---- 146 (313)
T d2hu7a1 83 ALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATED------------RVALYALDGGGLRELARLPGFG---- 146 (313)
T ss_dssp EEEEEETTSTTCEEECTTSCSBEEEEEEECSSCEEEEEECSS------------CEEEEEEETTEEEEEEEESSCE----
T ss_pred eEEEEccCCCCeeeEecCCceEEEEEeeecCceEEEecccCC------------ceEEEEEeCCceeeeccCCCcc----
Confidence 48899994 99999987744444445568999999875532 6778999999999998866331
Q ss_pred cccccccCccceeecc--CCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceE
Q 002194 393 AFNSVRKGMRSINWRS--DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (954)
Q Consensus 393 ~~~~~~~g~~~~~wsp--Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l 470 (954)
|-. .|+.|+=. .... .....+++.|+ ..+..+.++..++.+.....+++.+.
T Consensus 147 -------------FVtDI~~d~I~G~-g~~~--------g~~~sfF~adl---~SG~lri~tpkeGS~~~ay~~~gnKV- 200 (313)
T d2hu7a1 147 -------------FVSDIRGDLIAGL-GFFG--------GGRVSLFTSNL---SSGGLRVFDSGEGSFSSASISPGMKV- 200 (313)
T ss_dssp -------------EEEEEETTEEEEE-EEEE--------TTEEEEEEEET---TTEEEEEECCSSEEEEEEEECTTSCE-
T ss_pred -------------eEEeccCCeEEEE-eeec--------CCcceEEEEec---ccCCEEEecCCCCcccceeEccCcee-
Confidence 111 13322211 0000 12334777775 77888999999999999999999886
Q ss_pred EEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCC-ee---eccCCcEEEEEE
Q 002194 471 VYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPM-MR---RTSTGTYVIAKI 528 (954)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~spdG~~l~~~~ 528 (954)
.+.-+..++..+..+|+.++. ..-.+.+..+.++. .|. +. ..||++.++...
T Consensus 201 -~sdyEt~gEsywit~D~~s~~---yerve~P~kd~~sy--~p~~I~~~~Y~Pdd~L~iiak 256 (313)
T d2hu7a1 201 -TAGLETAREARLVTVDPRDGS---VEDLELPSKDFSSY--RPTAITWLGYLPDGRLAVVAR 256 (313)
T ss_dssp -EEEEEESSCEEEEEECTTTCC---EEECCCSSCHHHHH--CCSEEEEEEECTTSCEEEEEE
T ss_pred -eeccCCCCceEEEEEecccCc---eeeeecCcccceee--cceEEEeeeeCCCCcEEEEEe
Confidence 222222345666678888753 22223333343331 110 33 578888755444
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=98.19 E-value=8e-06 Score=82.29 Aligned_cols=165 Identities=19% Similarity=0.093 Sum_probs=90.1
Q ss_pred CCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC---CCcccEE
Q 002194 711 RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFCCG 787 (954)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~---p~~~~a~ 787 (954)
..+.|+. .+..|+|.++..........+++.++ |.+. ....++.|+||||||.+|..+|.+. ...+..+
T Consensus 69 ~~~~V~a---l~~pG~~~~e~~~~s~~~~a~~~~~~---i~~~--~~~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~l 140 (255)
T d1mo2a_ 69 GIAPVRA---VPQPGYEEGEPLPSSMAAVAAVQADA---VIRT--QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGV 140 (255)
T ss_dssp TTCCEEE---ECCTTSSTTCCEESSHHHHHHHHHHH---HHHT--TSSSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEE
T ss_pred CCceEEE---EeCCCcCCCCCCCCCHHHHHHHHHHH---HHHh--CCCCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEE
Confidence 3577888 44456655544333345555444444 3332 2235799999999999999988754 3457888
Q ss_pred EEeccCCCCC--------------CCCCCCccccch----hhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchH
Q 002194 788 IARSGAYNRT--------------LTPFGFQNEDRT----LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTM 849 (954)
Q Consensus 788 v~~~~~~~~~--------------~~~~~~~~~~~~----~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~ 849 (954)
|++.+..-.. ............ .....+.+..+. ...+.+|++++.+.+|.... ..
T Consensus 141 vlld~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~----~~~~~~p~l~v~a~~~~~~~--~~ 214 (255)
T d1mo2a_ 141 VLIDVYPPGHQDAMNAWLEELTATLFDRETVRMDDTRLTALGAYDRLTGQWR----PRETGLPTLLVSAGEPMGPW--PD 214 (255)
T ss_dssp EEEECSCSSHHHHHHHHHHHHHTTCC----CCCCHHHHHHHHHHHHHHHHCC----CCCCCCCEEEEECCSSSSCC--TT
T ss_pred EEECCCCCCCccchhhHHHHHHHHhhccccccCCHHHHHHHHHHHHHHhcCC----CccccceEEEeecCCCCCcc--hh
Confidence 8777532100 000000000000 011112222332 34678999999998775432 22
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 850 QSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 850 ~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
. .+. ......++++.+|+ +|...-.+....+.+.|.+||.
T Consensus 215 ~--~w~---~~~~~~~~~~~v~G-~H~~ml~~~~~~~A~~i~~~L~ 254 (255)
T d1mo2a_ 215 D--SWK---PTWPFEHDTVAVPG-DHFTMVQEHADAIARHIDAWLG 254 (255)
T ss_dssp C--CCC---CCCCSSCEEEECCS-CCSSCSSCCHHHHHHHHHHHHT
T ss_pred h--HHH---HhCCCCcEEEEECC-CCcccccccHHHHHHHHHHHhC
Confidence 1 111 11234578889997 7863223566777788888874
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=1.6e-06 Score=88.56 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=43.7
Q ss_pred CCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEe
Q 002194 711 RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (954)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (954)
.++.|+. .+..|+|.+. .......|..+++..+ .+.+++.++||||||.+|+.+|.+.|+++..++.+
T Consensus 48 L~~~v~~---~d~~g~~~~~----~~~~~a~~~~~~~~~~-----~~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l 115 (286)
T d1xkta_ 48 LSIPTYG---LQCTRAAPLD----SIHSLAAYYIDCIRQV-----QPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTH 115 (286)
T ss_dssp CSSCEEE---ECCCTTSCCS----CHHHHHHHHHHHHHHH-----CCSSCCEEEEETHHHHHHHHHHHHHHHC------C
T ss_pred cCCeEEE---EeCCCCCCCC----CHHHHHHHHHHHHHHh-----cCCCceEEeecCCccHHHHHHHHHHHHcCCCceeE
Confidence 3788888 5556776653 2344455554444332 23468999999999999999999999887776654
Q ss_pred c
Q 002194 791 S 791 (954)
Q Consensus 791 ~ 791 (954)
.
T Consensus 116 ~ 116 (286)
T d1xkta_ 116 N 116 (286)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.13 E-value=2.4e-06 Score=74.25 Aligned_cols=97 Identities=16% Similarity=0.075 Sum_probs=65.2
Q ss_pred EcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCC
Q 002194 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (954)
Q Consensus 645 ~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~ 724 (954)
-..+|.+++....- + -|.||++||.. ..|. ..++++|.|++ .|..
T Consensus 6 ~~~~G~~l~y~~~G--------~--G~pvlllHG~~--------------~~w~--------~~L~~~yrvi~---~Dlp 50 (122)
T d2dsta1 6 LHLYGLNLVFDRVG--------K--GPPVLLVAEEA--------------SRWP--------EALPEGYAFYL---LDLP 50 (122)
T ss_dssp EEETTEEEEEEEEC--------C--SSEEEEESSSG--------------GGCC--------SCCCTTSEEEE---ECCT
T ss_pred EEECCEEEEEEEEc--------C--CCcEEEEeccc--------------cccc--------ccccCCeEEEE---Eecc
Confidence 34578888766642 2 46788899831 1111 11357999999 6777
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 002194 725 GEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (954)
Q Consensus 725 G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 782 (954)
|+|.+..+........+|+.+.++.| +-++..|+||||||.+++.+++..+.
T Consensus 51 G~G~S~~p~~s~~~~a~~i~~ll~~L------~i~~~~viG~S~Gg~ia~~laa~~~~ 102 (122)
T d2dsta1 51 GYGRTEGPRMAPEELAHFVAGFAVMM------NLGAPWVLLRGLGLALGPHLEALGLR 102 (122)
T ss_dssp TSTTCCCCCCCHHHHHHHHHHHHHHT------TCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred ccCCCCCcccccchhHHHHHHHHHHh------CCCCcEEEEeCccHHHHHHHHhhccc
Confidence 88888665444455555555554443 34588999999999999999987643
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.12 E-value=0.00012 Score=75.20 Aligned_cols=231 Identities=13% Similarity=0.077 Sum_probs=133.0
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002194 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (954)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~ 192 (954)
+|.|.++...|.|+-.. . ..|+.++..+ ++.+.. .++ ..+.
T Consensus 22 gp~wd~~~~~l~wvDi~---------------------~-----------~~I~r~d~~~----g~~~~~-~~~--~~~~ 62 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNIL---------------------E-----------RELHELHLAS----GRKTVH-ALP--FMGS 62 (295)
T ss_dssp EEEEETTTTEEEEEEGG---------------------G-----------TEEEEEETTT----TEEEEE-ECS--SCEE
T ss_pred CCeEECCCCEEEEEECC---------------------C-----------CEEEEEECCC----CeEEEE-ECC--CCcE
Confidence 57899988888887431 0 2677777643 333322 233 3466
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCC
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (954)
...+.+||+.++- . ...|+++|.++++.+.+.......-...+.+....|+|++.+.. ......
T Consensus 63 ~i~~~~dg~l~va-~----------~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~-~~~~~~---- 126 (295)
T d2ghsa1 63 ALAKISDSKQLIA-S----------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGT-MGRKAE---- 126 (295)
T ss_dssp EEEEEETTEEEEE-E----------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEE-EETTCC----
T ss_pred EEEEecCCCEEEE-E----------eCccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEe-cccccc----
Confidence 7788889865543 2 34699999999988877654332111124577788999754433 110000
Q ss_pred CCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-ccccccccCCCCcEEEEEee
Q 002194 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISSI 351 (954)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~ 351 (954)
.....+|.++ +|+.+.+... .....+.||||++.++++..
T Consensus 127 --------------------------------------~~~g~l~~~~-~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt 167 (295)
T d2ghsa1 127 --------------------------------------TGAGSIYHVA-KGKVTKLFADISIPNSICFSPDGTTGYFVDT 167 (295)
T ss_dssp --------------------------------------TTCEEEEEEE-TTEEEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred --------------------------------------ccceeEeeec-CCcEEEEeeccCCcceeeecCCCceEEEeec
Confidence 0122344443 6766666554 45567899999999988764
Q ss_pred cCCcccccccCCCCcceEEEeccCce------EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 352 HRPYSFIVPCGRFPRQVGVWTTDGIF------VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~l~d~~g~~------~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
. .+.|+.++.+... .......+ +...++..++...||. +|+..
T Consensus 168 ~------------~~~I~~~~~d~~~~~~~~~~~~~~~~~----------~~~g~pdG~~vD~~Gn---lWva~------ 216 (295)
T d2ghsa1 168 K------------VNRLMRVPLDARTGLPTGKAEVFIDST----------GIKGGMDGSVCDAEGH---IWNAR------ 216 (295)
T ss_dssp T------------TCEEEEEEBCTTTCCBSSCCEEEEECT----------TSSSEEEEEEECTTSC---EEEEE------
T ss_pred c------------cceeeEeeecccccccccceEEEeccC----------cccccccceEEcCCCC---EEeee------
Confidence 3 2378888776321 11111111 1112334567777775 22111
Q ss_pred cccccCCCeEEEEecCCCCCCCceEEeecccccCceeec-cCCceEEEEEe
Q 002194 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWC-DDSLALVYESW 475 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~s-pDg~~l~~~~~ 475 (954)
-..+.|++++. +|.....+.-....+.+++|- ||.+.|+..+-
T Consensus 217 ----~~~g~V~~~dp---~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 217 ----WGEGAVDRYDT---DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp ----ETTTEEEEECT---TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred ----eCCCceEEecC---CCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence 12347888884 555555554444456778885 78888887653
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=0.0011 Score=66.34 Aligned_cols=71 Identities=20% Similarity=0.106 Sum_probs=45.5
Q ss_pred eecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcccce
Q 002194 115 SFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFV 194 (954)
Q Consensus 115 ~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~ 194 (954)
.+++||++||..+.+ +.|.||++.+ + ...+.+.++ ...+..+
T Consensus 20 c~~~d~~~l~sgs~D---------------------------------g~i~vWd~~~-~--~~~~~l~~H--~~~V~~v 61 (293)
T d1p22a2 20 CLQYDDQKIVSGLRD---------------------------------NTIKIWDKNT-L--ECKRILTGH--TGSVLCL 61 (293)
T ss_dssp EEECCSSEEEEEESS---------------------------------SCEEEEESSS-C--CEEEEECCC--SSCEEEE
T ss_pred EEEEcCCEEEEEeCC---------------------------------CeEEEEECCC-C--cEEEEEecC--CCCEeee
Confidence 578999999988876 5799999854 2 223344332 2345555
Q ss_pred eecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeec
Q 002194 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL 234 (954)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 234 (954)
+ +|++.|+... ....|.+++...+.....
T Consensus 62 ~--~~~~~l~s~s---------~D~~i~~~~~~~~~~~~~ 90 (293)
T d1p22a2 62 Q--YDERVIITGS---------SDSTVRVWDVNTGEMLNT 90 (293)
T ss_dssp E--CCSSEEEEEE---------TTSCEEEEESSSCCEEEE
T ss_pred e--cccceeeccc---------cccccccccccccccccc
Confidence 4 5788777644 244677777777665444
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=0.002 Score=64.31 Aligned_cols=226 Identities=14% Similarity=-0.019 Sum_probs=134.2
Q ss_pred ceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhh
Q 002194 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (954)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (954)
...|..+++++.+...+...... +..+.|.+..+.|+++-.
T Consensus 9 ~~~I~~~~l~~~~~~~~~~~~~~-----~~~id~d~~~~~lYw~D~---------------------------------- 49 (266)
T d1ijqa1 9 RHEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSDL---------------------------------- 49 (266)
T ss_dssp BSSEEEEETTSCCCEEEECSCSS-----EEEEEEETTTTEEEEEET----------------------------------
T ss_pred CCeEEEEECCCCcceeeeCCCCc-----eEEEEEEeCCCEEEEEEC----------------------------------
Confidence 34689999998887777543332 446778888888887610
Q ss_pred hccCccccccccccccceEEEEEeCC-----ce-eEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEE
Q 002194 298 LLKDEYDEDLFDYYATTQLVLVSLDG-----TV-KEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (954)
Q Consensus 298 ~l~~~~d~~~~~~~~~~~l~~~~~~G-----~~-~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l 370 (954)
....|++.+++| .. ..+... ....++++.+-++.|+++... ...|.+
T Consensus 50 --------------~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~------------~~~I~v 103 (266)
T d1ijqa1 50 --------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSV 103 (266)
T ss_dssp --------------TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEE
T ss_pred --------------CCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecC------------CCEEEe
Confidence 123466666632 12 223333 445566777778888886532 237899
Q ss_pred EeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceE
Q 002194 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (954)
Q Consensus 371 ~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (954)
.+++|...+.+..... ..+..++..|... .+||++. .....|+..++ +|...+.
T Consensus 104 ~~~~g~~~~~~~~~~~------------~~P~~l~vd~~~g-~ly~~~~----------~~~~~I~r~~~---dGs~~~~ 157 (266)
T d1ijqa1 104 ADTKGVKRKTLFRENG------------SKPRAIVVDPVHG-FMYWTDW----------GTPAKIKKGGL---NGVDIYS 157 (266)
T ss_dssp EETTSSSEEEEEECTT------------CCEEEEEEETTTT-EEEEEEC----------SSSCEEEEEET---TSCCEEE
T ss_pred EecCCceEEEEEcCCC------------CCcceEEEEcccC-eEEEecc----------CCCcceeEecc---CCCceec
Confidence 9999877655443211 1234567777443 5666442 12347888886 7776666
Q ss_pred Eeec-ccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEe
Q 002194 451 LHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 451 l~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (954)
+... -....++++.+.++.|++..... ..|+.+++++. ....+....... ..| ...+.++.+|++...
T Consensus 158 l~~~~~~~p~gl~iD~~~~~lYw~d~~~---~~I~~~~~dG~--~~~~~~~~~~~~-----~~p-~~lav~~~~ly~td~ 226 (266)
T d1ijqa1 158 LVTENIQWPNGITLDLLSGRLYWVDSKL---HSISSIDVNGG--NRKTILEDEKRL-----AHP-FSLAVFEDKVFWTDI 226 (266)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTT---TEEEEEETTSC--SCEEEEECTTTT-----SSE-EEEEEETTEEEEEET
T ss_pred ccccccceeeEEEeeccccEEEEecCCc---CEEEEEECCCC--CEEEEEeCCCcc-----ccc-EEEEEECCEEEEEEC
Confidence 6543 23456789999999999884333 47999999885 333433222111 011 334556666766641
Q ss_pred eccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeE
Q 002194 530 KENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (954)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 565 (954)
....|++++..+|+..
T Consensus 227 --------------------~~~~I~~~~~~~g~~~ 242 (266)
T d1ijqa1 227 --------------------INEAIFSANRLTGSDV 242 (266)
T ss_dssp --------------------TTTEEEEEETTTCCCC
T ss_pred --------------------CCCeEEEEECCCCcce
Confidence 1234788887766533
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.86 E-value=0.0013 Score=65.74 Aligned_cols=115 Identities=10% Similarity=-0.010 Sum_probs=61.8
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
.....+++.++|+.++... .. ..+..++..+.......... ...+..+++.++|+
T Consensus 98 ~~p~~iavd~~g~i~v~d~-~~------------~~~~~~~~~~~~~~~~~~~~------------~~~p~~i~~~~~g~ 152 (260)
T d1rwia_ 98 NYPEGLAVDTQGAVYVADR-GN------------NRVVKLAAGSKTQTVLPFTG------------LNDPDGVAVDNSGN 152 (260)
T ss_dssp CSEEEEEECTTCCEEEEEG-GG------------TEEEEECTTCSSCEECCCCS------------CCSCCEEEECTTCC
T ss_pred eecccccccccceeEeecc-cc------------ccccccccccceeeeeeecc------------cCCcceeeecCCCC
Confidence 4456778889997544332 21 14555555554322221110 12345688899987
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe-ecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+ |+.+. ....|+.++. ++.....+. ..-....++++.++|+ |+++ +..+ .+|++++.++
T Consensus 153 -~-~v~~~-----------~~~~i~~~d~---~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vs-d~~~--~~i~~~~~~~ 212 (260)
T d1rwia_ 153 -V-YVTDT-----------DNNRVVKLEA---ESNNQVVLPFTDITAPWGIAVDEAGT-VYVT-EHNT--NQVVKLLAGS 212 (260)
T ss_dssp -E-EEEEG-----------GGTEEEEECT---TTCCEEECCCSSCCSEEEEEECTTCC-EEEE-ETTT--TEEEEECTTC
T ss_pred -E-eeecc-----------cccccccccc---ccceeeeeeccccCCCccceeeeeee-eeee-ecCC--CEEEEEeCCC
Confidence 3 33222 2447888874 444333332 2223345688889986 4444 3332 4688888776
Q ss_pred C
Q 002194 491 K 491 (954)
Q Consensus 491 ~ 491 (954)
.
T Consensus 213 ~ 213 (260)
T d1rwia_ 213 T 213 (260)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=0.004 Score=62.10 Aligned_cols=226 Identities=11% Similarity=0.071 Sum_probs=132.6
Q ss_pred ceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce----EEEeccCCCc
Q 002194 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLA 387 (954)
Q Consensus 314 ~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~----~~~l~~~~~~ 387 (954)
..|..+++ +.....+..+ .....++|.+.+++|+++.... ..|+..++++.. .+.+....
T Consensus 10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~------------~~I~~~~l~~~~~~~~~~~~~~~~-- 75 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQ------------RMICSTQLDRAHGVSSYDTVISRD-- 75 (266)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTT------------TEEEEEEC--------CEEEECSS--
T ss_pred CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCC------------CEEEEEEecCCCCCcceEEEEeCC--
Confidence 35888898 4455555444 5666788888888888765221 256666666422 12222111
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEee-cccccCceeeccC
Q 002194 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCDD 466 (954)
Q Consensus 388 ~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~~~~~~~~~~spD 466 (954)
...+..+++-+-++.| ||++. ..+.|.++++ +|...+.+.. ......+++..|.
T Consensus 76 ----------~~~p~glAvD~~~~~l-Y~~d~-----------~~~~I~v~~~---~g~~~~~~~~~~~~~P~~l~vd~~ 130 (266)
T d1ijqa1 76 ----------IQAPDGLAVDWIHSNI-YWTDS-----------VLGTVSVADT---KGVKRKTLFRENGSKPRAIVVDPV 130 (266)
T ss_dssp ----------CSCCCEEEEETTTTEE-EEEET-----------TTTEEEEEET---TSSSEEEEEECTTCCEEEEEEETT
T ss_pred ----------CCCcceEEEeeccceE-EEEec-----------CCCEEEeEec---CCceEEEEEcCCCCCcceEEEEcc
Confidence 0123456666556654 55332 2457888886 6666555433 3345667888898
Q ss_pred CceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCC
Q 002194 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGAT 546 (954)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (954)
...|+++.... ..+|+++++++. ....+.........+ +++.+.++.|+|...
T Consensus 131 ~g~ly~~~~~~--~~~I~r~~~dGs--~~~~l~~~~~~~p~g------l~iD~~~~~lYw~d~----------------- 183 (266)
T d1ijqa1 131 HGFMYWTDWGT--PAKIKKGGLNGV--DIYSLVTENIQWPNG------ITLDLLSGRLYWVDS----------------- 183 (266)
T ss_dssp TTEEEEEECSS--SCEEEEEETTSC--CEEEEECSSCSCEEE------EEEETTTTEEEEEET-----------------
T ss_pred cCeEEEeccCC--CcceeEeccCCC--ceecccccccceeeE------EEeeccccEEEEecC-----------------
Confidence 88888875433 267999999984 445554333222222 667777888887751
Q ss_pred CCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCcee
Q 002194 547 PEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (954)
Q Consensus 547 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~ 622 (954)
....|..+++++...+.+...... . .....++.++++++++... ...|++++..+|+..
T Consensus 184 ---~~~~I~~~~~dG~~~~~~~~~~~~--~---------~~p~~lav~~~~ly~td~~---~~~I~~~~~~~g~~~ 242 (266)
T d1ijqa1 184 ---KLHSISSIDVNGGNRKTILEDEKR--L---------AHPFSLAVFEDKVFWTDII---NEAIFSANRLTGSDV 242 (266)
T ss_dssp ---TTTEEEEEETTSCSCEEEEECTTT--T---------SSEEEEEEETTEEEEEETT---TTEEEEEETTTCCCC
T ss_pred ---CcCEEEEEECCCCCEEEEEeCCCc--c---------cccEEEEEECCEEEEEECC---CCeEEEEECCCCcce
Confidence 123589999988776666544321 0 0112356667787775433 457888887666543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.84 E-value=0.002 Score=64.20 Aligned_cols=226 Identities=12% Similarity=0.082 Sum_probs=129.4
Q ss_pred cceEEEEEeCCc-eeE------cCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccC
Q 002194 313 TTQLVLVSLDGT-VKE------IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDL 384 (954)
Q Consensus 313 ~~~l~~~~~~G~-~~~------l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~ 384 (954)
...|..+++++. ... +..+ ..+..+++.+-.++|.++... ...|+..+++|+..+.+...
T Consensus 9 ~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~------------~~~I~~~~l~g~~~~~v~~~ 76 (263)
T d1npea_ 9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS------------EPSIGRASLHGGEPTTIIRQ 76 (263)
T ss_dssp EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT------------TTEEEEEESSSCCCEEEECT
T ss_pred CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECC------------CCeEEEEEcccCCcEEEEEe
Confidence 446778887442 111 1112 334456677777888776422 23788888887766655432
Q ss_pred CCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-ccccCceee
Q 002194 385 PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISW 463 (954)
Q Consensus 385 ~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~ 463 (954)
.. ..+..+++..-+. .+||.+. ....|.++++ ++...+.+... ......++.
T Consensus 77 ~~------------~~p~~iAvD~~~~-~lY~~d~-----------~~~~I~~~~~---dg~~~~~l~~~~l~~p~~l~v 129 (263)
T d1npea_ 77 DL------------GSPEGIALDHLGR-TIFWTDS-----------QLDRIEVAKM---DGTQRRVLFDTGLVNPRGIVT 129 (263)
T ss_dssp TC------------CCEEEEEEETTTT-EEEEEET-----------TTTEEEEEET---TSCSCEEEECSSCSSEEEEEE
T ss_pred cc------------ccccEEEEeccCC-eEEEecc-----------CCCEEEEEec---CCceEEEEecccccCCcEEEE
Confidence 11 1223455544444 3555332 2457888886 66666555433 245567889
Q ss_pred ccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecC
Q 002194 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGN 543 (954)
Q Consensus 464 spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~ 543 (954)
.|....|++...... ..+|+++++++. ....+.........+ +++.+.++.|+|...
T Consensus 130 dp~~g~ly~t~~~~~-~~~I~r~~~dG~--~~~~i~~~~~~~P~g------laiD~~~~~lYw~d~-------------- 186 (263)
T d1npea_ 130 DPVRGNLYWTDWNRD-NPKIETSHMDGT--NRRILAQDNLGLPNG------LTFDAFSSQLCWVDA-------------- 186 (263)
T ss_dssp ETTTTEEEEEECCSS-SCEEEEEETTSC--CCEEEECTTCSCEEE------EEEETTTTEEEEEET--------------
T ss_pred ecccCcEEEeecCCC-CcEEEEecCCCC--Cceeeeeecccccce------EEEeecCcEEEEEeC--------------
Confidence 999888888765432 357999999985 334444322221111 566667777777641
Q ss_pred CCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeE
Q 002194 544 GATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (954)
Q Consensus 544 ~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~ 623 (954)
....|..+|++++..+.+...-.. ...++.++++++++-+. ...|++++..+|+..+
T Consensus 187 ------~~~~I~~~~~~g~~~~~v~~~~~~--------------P~~lav~~~~lYwtd~~---~~~I~~~~~~~g~~~~ 243 (263)
T d1npea_ 187 ------GTHRAECLNPAQPGRRKVLEGLQY--------------PFAVTSYGKNLYYTDWK---TNSVIAMDLAISKEMD 243 (263)
T ss_dssp ------TTTEEEEEETTEEEEEEEEECCCS--------------EEEEEEETTEEEEEETT---TTEEEEEETTTTEEEE
T ss_pred ------CCCEEEEEECCCCCeEEEECCCCC--------------cEEEEEECCEEEEEECC---CCEEEEEECCCCccce
Confidence 123588888887666555432211 12345566777765543 3468888877665443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.67 E-value=0.004 Score=61.97 Aligned_cols=199 Identities=11% Similarity=0.071 Sum_probs=121.1
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
+....+.+..++|+++.. ....|++++++++..+.+....... ...++...-++.|+++.
T Consensus 38 ~~~ld~D~~~~~iywsd~--------~~~~I~~~~l~g~~~~~v~~~~~~~----p~~iAvD~~~~~lY~~d-------- 97 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDI--------SEPSIGRASLHGGEPTTIIRQDLGS----PEGIALDHLGRTIFWTD-------- 97 (263)
T ss_dssp EEEEEEETTTTEEEEEET--------TTTEEEEEESSSCCCEEEECTTCCC----EEEEEEETTTTEEEEEE--------
T ss_pred EEEEEEEeCCCEEEEEEC--------CCCeEEEEEcccCCcEEEEEecccc----ccEEEEeccCCeEEEec--------
Confidence 444667777888887532 3568999999987766554332111 33555554566777761
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCc-eeEc-CCC-ccccccccCCCCcEEE
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEI-GPP-AVYTSLDPSPDEKYIL 347 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~-~~~l-~~~-~~~~~~~~SpDGk~l~ 347 (954)
. ....|.+.+++|. .+.+ ... ....++++.|.+.+|.
T Consensus 98 -------------~---------------------------~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly 137 (263)
T d1npea_ 98 -------------S---------------------------QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLY 137 (263)
T ss_dssp -------------T---------------------------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEE
T ss_pred -------------c---------------------------CCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEE
Confidence 0 2345778888553 2333 333 5567788989888888
Q ss_pred EEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
++..... ...|+..+++|...+.+..... ..+..+++.+.+++ +||++.
T Consensus 138 ~t~~~~~----------~~~I~r~~~dG~~~~~i~~~~~------------~~P~glaiD~~~~~-lYw~d~-------- 186 (263)
T d1npea_ 138 WTDWNRD----------NPKIETSHMDGTNRRILAQDNL------------GLPNGLTFDAFSSQ-LCWVDA-------- 186 (263)
T ss_dssp EEECCSS----------SCEEEEEETTSCCCEEEECTTC------------SCEEEEEEETTTTE-EEEEET--------
T ss_pred EeecCCC----------CcEEEEecCCCCCceeeeeecc------------cccceEEEeecCcE-EEEEeC--------
Confidence 7763221 1257778888876666543211 22346788877775 555432
Q ss_pred cccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
..+.|..+++ +|...+.+........++++ ++.+|+++.+.. ..|++++..++
T Consensus 187 ---~~~~I~~~~~---~g~~~~~v~~~~~~P~~lav--~~~~lYwtd~~~---~~I~~~~~~~g 239 (263)
T d1npea_ 187 ---GTHRAECLNP---AQPGRRKVLEGLQYPFAVTS--YGKNLYYTDWKT---NSVIAMDLAIS 239 (263)
T ss_dssp ---TTTEEEEEET---TEEEEEEEEECCCSEEEEEE--ETTEEEEEETTT---TEEEEEETTTT
T ss_pred ---CCCEEEEEEC---CCCCeEEEECCCCCcEEEEE--ECCEEEEEECCC---CEEEEEECCCC
Confidence 2457888885 66555555433222334444 577888886554 46999999876
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.0038 Score=62.17 Aligned_cols=52 Identities=8% Similarity=0.097 Sum_probs=33.8
Q ss_pred eecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
.+++||++|+.... ...|.++|+++++..+........ +..+ ++|++.|+..
T Consensus 20 c~~~d~~~l~sgs~---------Dg~i~vWd~~~~~~~~~l~~H~~~----V~~v--~~~~~~l~s~ 71 (293)
T d1p22a2 20 CLQYDDQKIVSGLR---------DNTIKIWDKNTLECKRILTGHTGS----VLCL--QYDERVIITG 71 (293)
T ss_dssp EEECCSSEEEEEES---------SSCEEEEESSSCCEEEEECCCSSC----EEEE--ECCSSEEEEE
T ss_pred EEEEcCCEEEEEeC---------CCeEEEEECCCCcEEEEEecCCCC----Eeee--ecccceeecc
Confidence 46789999887542 456677788888776655443332 4444 4578887765
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.51 E-value=0.009 Score=59.21 Aligned_cols=131 Identities=8% Similarity=-0.048 Sum_probs=70.6
Q ss_pred eEEEEEeCC-ceeEcCCC--ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCC
Q 002194 315 QLVLVSLDG-TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (954)
Q Consensus 315 ~l~~~~~~G-~~~~l~~~--~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p 391 (954)
.++.++..+ ........ .....++++|+|+. +++... ...+..++.+++....+....
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~-~v~~~~------------~~~i~~~d~~~~~~~~~~~~~------ 180 (260)
T d1rwia_ 120 RVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNV-YVTDTD------------NNRVVKLEAESNNQVVLPFTD------ 180 (260)
T ss_dssp EEEEECTTCSSCEECCCCSCCSCCEEEECTTCCE-EEEEGG------------GTEEEEECTTTCCEEECCCSS------
T ss_pred cccccccccceeeeeeecccCCcceeeecCCCCE-eeeccc------------cccccccccccceeeeeeccc------
Confidence 455666533 22222222 44467788999984 333222 126788888766544333211
Q ss_pred ccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecc-cccCceeeccCCceE
Q 002194 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCDDSLAL 470 (954)
Q Consensus 392 ~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~spDg~~l 470 (954)
...+..+++.+||+ +|+.+. ....|+.++. ++.....+.... ....++++++||. |
T Consensus 181 ------~~~p~gi~~d~~g~--l~vsd~-----------~~~~i~~~~~---~~~~~~~~~~~~~~~P~~i~~d~~g~-l 237 (260)
T d1rwia_ 181 ------ITAPWGIAVDEAGT--VYVTEH-----------NTNQVVKLLA---GSTTSTVLPFTGLNTPLAVAVDSDRT-V 237 (260)
T ss_dssp ------CCSEEEEEECTTCC--EEEEET-----------TTTEEEEECT---TCSCCEECCCCSCCCEEEEEECTTCC-E
T ss_pred ------cCCCccceeeeeee--eeeeec-----------CCCEEEEEeC---CCCeEEEEccCCCCCeEEEEEeCCCC-E
Confidence 12335688889886 344332 2456777773 444333332222 2345788999985 5
Q ss_pred EEEEeccccceEEEEEcCCC
Q 002194 471 VYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~ 490 (954)
+++.+. + .+|++++..+
T Consensus 238 ~vad~~-~--~rI~~i~~~~ 254 (260)
T d1rwia_ 238 YVADRG-N--DRVVKLTSLE 254 (260)
T ss_dssp EEEEGG-G--TEEEEECCCG
T ss_pred EEEECC-C--CEEEEEeCCC
Confidence 444333 2 4688887654
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.43 E-value=0.001 Score=65.98 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=30.4
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCC-cccEEEEeccC
Q 002194 758 PSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGA 793 (954)
Q Consensus 758 ~~ri~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~ 793 (954)
.+++-++||||||.++-.++.+.+. .+.-+|++++.
T Consensus 79 ~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLgsP 115 (279)
T d1ei9a_ 79 QQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQ 115 (279)
T ss_dssp TTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESCC
T ss_pred ccceeEEEEccccHHHHHHHHHcCCCCcceEEEECCC
Confidence 3589999999999999999998864 57888888764
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.30 E-value=0.021 Score=57.04 Aligned_cols=133 Identities=6% Similarity=0.053 Sum_probs=71.9
Q ss_pred eEEEEEeCCce-eEcCCC--ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCC
Q 002194 315 QLVLVSLDGTV-KEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (954)
Q Consensus 315 ~l~~~~~~G~~-~~l~~~--~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p 391 (954)
.|..++.+|.. +.+... ......++.++|+.++.... ...+.+++.+++..+.+......
T Consensus 94 ~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~-------------~~~~~~~~~~g~~~~~~g~~~~~---- 156 (279)
T d1q7fa_ 94 QIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECK-------------VMRVIIFDQNGNVLHKFGCSKHL---- 156 (279)
T ss_dssp EEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETT-------------TTEEEEECTTSCEEEEEECTTTC----
T ss_pred ccccccccccceeecCCCcccccceeccccCCcEEEEeec-------------cceeeEeccCCceeecccccccc----
Confidence 45566665543 233222 34456778888876555431 12677888887765554322110
Q ss_pred ccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEee-c-ccccCceeeccCCce
Q 002194 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-L-DLRYGGISWCDDSLA 469 (954)
Q Consensus 392 ~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~-~~~~~~~~~spDg~~ 469 (954)
.....+++.++|+ +|..+. ....|++++. +|.....+.. . .....++++.++|+
T Consensus 157 -------~~~~~i~~d~~g~--i~v~d~-----------~~~~V~~~d~---~G~~~~~~g~~g~~~~P~giavD~~G~- 212 (279)
T d1q7fa_ 157 -------EFPNGVVVNDKQE--IFISDN-----------RAHCVKVFNY---EGQYLRQIGGEGITNYPIGVGINSNGE- 212 (279)
T ss_dssp -------SSEEEEEECSSSE--EEEEEG-----------GGTEEEEEET---TCCEEEEESCTTTSCSEEEEEECTTCC-
T ss_pred -------cccceeeecccee--EEeeec-----------cccceeeeec---CCceeeeecccccccCCcccccccCCe-
Confidence 2234567777775 343222 2457888884 5543333321 1 11245678999997
Q ss_pred EEEEEeccccceEEEEEcCCC
Q 002194 470 LVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~ 490 (954)
|+++...++ .+|.+++.++
T Consensus 213 i~Vad~~~~--~~v~~f~~~G 231 (279)
T d1q7fa_ 213 ILIADNHNN--FNLTIFTQDG 231 (279)
T ss_dssp EEEEECSSS--CEEEEECTTS
T ss_pred EEEEECCCC--cEEEEECCCC
Confidence 444433332 4677788665
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=97.24 E-value=0.00039 Score=70.94 Aligned_cols=109 Identities=10% Similarity=-0.128 Sum_probs=64.6
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH-HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (954)
.|++|++||.... ....+.......+. ...+.|+..|.......... .........-+.+...++
T Consensus 70 ~pt~iiiHGw~~~-------------~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a~~~Y~-~a~~n~~~Vg~~ia~~i~ 135 (337)
T d1rp1a2 70 KKTRFIIHGFIDK-------------GEENWLLDMCKNMFKVEEVNCICVDWKKGSQTSYT-QAANNVRVVGAQVAQMLS 135 (337)
T ss_dssp SEEEEEECCCCCT-------------TCTTHHHHHHHHHTTTCCEEEEEEECHHHHSSCHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcCC-------------CCcchHHHHHHHHHhcCCceEEEEeeccccCcchH-HHHHHHHHHHHHHHHHHH
Confidence 5999999996311 11111112222333 45699998555211000000 001111223455667777
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
+|.+...++++++.|+|||+||.+|..+..+. ..+..++...|+
T Consensus 136 ~l~~~~g~~~~~vhlIGhSLGAhvAG~aG~~~-~~l~rItgLDPA 179 (337)
T d1rp1a2 136 MLSANYSYSPSQVQLIGHSLGAHVAGEAGSRT-PGLGRITGLDPV 179 (337)
T ss_dssp HHHHHHCCCGGGEEEEEETHHHHHHHHHHHTS-TTCCEEEEESCC
T ss_pred HHHHhcCCChhheEEEeecHHHhhhHHHHHhh-ccccceeccCCC
Confidence 77777668899999999999999998666554 567777777765
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.19 E-value=0.017 Score=57.84 Aligned_cols=131 Identities=13% Similarity=0.127 Sum_probs=69.0
Q ss_pred eEEEEEeCCce-eEcCC--C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccC
Q 002194 315 QLVLVSLDGTV-KEIGP--P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (954)
Q Consensus 315 ~l~~~~~~G~~-~~l~~--~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~ 390 (954)
+++.++.+|+. ..+.. . .....+++.++|.. +++... ...|++++.+|.....+... .
T Consensus 136 ~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i-~v~d~~------------~~~V~~~d~~G~~~~~~g~~-g---- 197 (279)
T d1q7fa_ 136 RVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEI-FISDNR------------AHCVKVFNYEGQYLRQIGGE-G---- 197 (279)
T ss_dssp EEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEE-EEEEGG------------GTEEEEEETTCCEEEEESCT-T----
T ss_pred eeeEeccCCceeecccccccccccceeeeccceeE-Eeeecc------------ccceeeeecCCceeeeeccc-c----
Confidence 35555554432 22211 1 34456778888864 333322 22788999988776665321 1
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecc--cccCceeeccCCc
Q 002194 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--LRYGGISWCDDSL 468 (954)
Q Consensus 391 p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~--~~~~~~~~spDg~ 468 (954)
....+..+++.++|+ |++. +. .....|.+++. +|.-.+.+.... .....++..|||+
T Consensus 198 ------~~~~P~giavD~~G~-i~Va-d~----------~~~~~v~~f~~---~G~~~~~~~~~~~~~~p~~vav~~dG~ 256 (279)
T d1q7fa_ 198 ------ITNYPIGVGINSNGE-ILIA-DN----------HNNFNLTIFTQ---DGQLISALESKVKHAQCFDVALMDDGS 256 (279)
T ss_dssp ------TSCSEEEEEECTTCC-EEEE-EC----------SSSCEEEEECT---TSCEEEEEEESSCCSCEEEEEEETTTE
T ss_pred ------cccCCcccccccCCe-EEEE-EC----------CCCcEEEEECC---CCCEEEEEeCCCCCCCEeEEEEeCCCc
Confidence 112345788999997 4443 21 12335777773 443333342221 2356788999996
Q ss_pred eEEEEEeccccceEEEEEc
Q 002194 469 ALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~d 487 (954)
|+.+ +.+ +..++|++.
T Consensus 257 -l~V~-~~n-~~v~~fr~~ 272 (279)
T d1q7fa_ 257 -VVLA-SKD-YRLYIYRYV 272 (279)
T ss_dssp -EEEE-ETT-TEEEEEECS
T ss_pred -EEEE-eCC-CeEEEEEee
Confidence 4433 333 335566543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.07 E-value=0.0049 Score=63.77 Aligned_cols=121 Identities=14% Similarity=0.044 Sum_probs=68.7
Q ss_pred cccceeec-----CCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecC
Q 002194 190 KLNFVTWS-----QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (954)
Q Consensus 190 ~~~~~~wS-----PDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (954)
...+|..| +||++|+ +.+ ..+.+|-++|+++-+..+++..+.... ...+.-.++++..++....
T Consensus 84 D~HHP~~S~TdGtyDGrylF-VND-------kan~RVAvIdl~~fkt~kIi~iPn~~~---~HG~r~~~~p~T~YV~~~~ 152 (459)
T d1fwxa2 84 DLHHVHMSFTEGKYDGRFLF-MND-------KANTRVARVRCDVMKCDAILEIPNAKG---IHGLRPQKWPRSNYVFCNG 152 (459)
T ss_dssp CBCCEEEEEETTEEEEEEEE-EEE-------TTTTEEEEEETTTTEEEEEEECSSCCS---EEEEEECCSSBCSEEEEEE
T ss_pred CcCCCcccccCCccceeEEE-EEc-------CCCceEEEEECcceeeeEEEecCCCCC---CceeecccCCCeEEEEccC
Confidence 45667665 5888764 443 348899999999999888876665321 3345555566554443111
Q ss_pred CCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCcccccccccc--ccceEEEEEe-CCc-eeEcCCCccccccccC
Q 002194 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYY--ATTQLVLVSL-DGT-VKEIGPPAVYTSLDPS 340 (954)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~--~~~~l~~~~~-~G~-~~~l~~~~~~~~~~~S 340 (954)
....+ -+.|+..++.. ....+..+|. +.+ ..++.-++......+|
T Consensus 153 e~~vP-------------------------------~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s 201 (459)
T d1fwxa2 153 EDETP-------------------------------LVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDAD 201 (459)
T ss_dssp CSCEE-------------------------------SSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEEC
T ss_pred ccccc-------------------------------cCCCCccccchhhcceEEEEEecCCceEEEEeeeCCChhccccC
Confidence 11110 00011000000 1234556777 553 3344434556788999
Q ss_pred CCCcEEEEEeec
Q 002194 341 PDEKYILISSIH 352 (954)
Q Consensus 341 pDGk~l~~~s~~ 352 (954)
|||||+++++..
T Consensus 202 ~dGK~af~TsyN 213 (459)
T d1fwxa2 202 YEGKWAFSTSYN 213 (459)
T ss_dssp SSSSEEEEEESC
T ss_pred CCCCEEEEEecc
Confidence 999999998844
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.99 E-value=0.00099 Score=67.74 Aligned_cols=108 Identities=11% Similarity=-0.142 Sum_probs=66.5
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~a 746 (954)
.|++|++||.... ....+.......++. ..+.|+..|. ......... .......-..+...
T Consensus 70 ~pt~iiiHG~~~~-------------~~~~~~~~~~~a~l~~~d~NVi~VDW---~~~a~~~Y~~a~~n~~~Vg~~ia~~ 133 (338)
T d1bu8a2 70 RKTRFIVHGFIDK-------------GEDGWLLDMCKKMFQVEKVNCICVDW---RRGSRTEYTQASYNTRVVGAEIAFL 133 (338)
T ss_dssp SEEEEEECCSCCT-------------TCTTHHHHHHHHHHTTCCEEEEEEEC---HHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEeCcccCC-------------CCcccHHHHHHHHHhcCCceEEEEec---hhhcccchHHHHHhHHHHHHHHHHH
Confidence 6999999995211 111112223333444 5699998444 111000000 01112223444556
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
+++|.....++++++.++|||+|+.+|..+..+.+.++..++...|+
T Consensus 134 i~~l~~~~g~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA 180 (338)
T d1bu8a2 134 VQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPA 180 (338)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred HHHHHHhcCCCcceeEEEeccHHHHHHHHHHHhhccccccccccccC
Confidence 67766665688999999999999999999988877778888888775
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.69 E-value=0.083 Score=54.43 Aligned_cols=108 Identities=10% Similarity=0.067 Sum_probs=63.1
Q ss_pred CCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002194 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (954)
Q Consensus 341 pDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~ 420 (954)
+|||||......+ ..|.+.|++.-+..++...|... +...+..+++++..++.....
T Consensus 97 yDGrylFVNDkan------------~RVAvIdl~~fkt~kIi~iPn~~-----------~~HG~r~~~~p~T~YV~~~~e 153 (459)
T d1fwxa2 97 YDGRFLFMNDKAN------------TRVARVRCDVMKCDAILEIPNAK-----------GIHGLRPQKWPRSNYVFCNGE 153 (459)
T ss_dssp EEEEEEEEEETTT------------TEEEEEETTTTEEEEEEECSSCC-----------SEEEEEECCSSBCSEEEEEEC
T ss_pred cceeEEEEEcCCC------------ceEEEEECcceeeeEEEecCCCC-----------CCceeecccCCCeEEEEccCc
Confidence 4899998877443 38889999988887777655431 223355666777665553322
Q ss_pred -------cCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEE
Q 002194 421 -------DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 421 -------~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (954)
++....-.......+..+|. +..+...-...+.....+.+++||+++++.+
T Consensus 154 ~~vP~pndg~~l~d~~~y~~~~t~ID~---~tm~V~~QV~V~g~ld~~~~s~dGK~af~Ts 211 (459)
T d1fwxa2 154 DETPLVNDGTNMEDVANYVNVFTAVDA---DKWEVAWQVLVSGNLDNCDADYEGKWAFSTS 211 (459)
T ss_dssp SCEESSCSSSSTTCGG-EEEEEEEEET---TTTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred cccccCCCCccccchhhcceEEEEEec---CCceEEEEeeeCCChhccccCCCCCEEEEEe
Confidence 11111000011234556774 3333322223355677899999999988876
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.30 E-value=1 Score=40.86 Aligned_cols=208 Identities=11% Similarity=0.041 Sum_probs=111.8
Q ss_pred CceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECC-CCceeecccCCCccccccccceeEecCC
Q 002194 177 GQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-TGKARPLFQSPDIYLNAIFDNFVWVNNS 255 (954)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~-~g~~~~lt~~~~~~~~~~~~~~~wspDG 255 (954)
++..+|+.-|-. ....|.. .=..|.|+++ ...+.+...||..++. -|+..++....- +.-+.-.-|+
T Consensus 46 ~~~vkLtkePI~-~~~~Pk~--~ldfi~f~RD---V~kGkE~Hai~~~Nlk~~GEE~~i~spk~------vRI~S~~ydd 113 (313)
T d2hu7a1 46 GETVKLNREPIN-SVLDPHY--GVGRVILVRD---VSKGAEQHALFKVNTSRPGEEQRLEAVKP------MRILSGVDTG 113 (313)
T ss_dssp SSCEECCSSCCS-EECEECT--TBSEEEEEEE---CSTTSCCEEEEEEETTSTTCEEECTTSCS------BEEEEEEECS
T ss_pred CEEEEEeccccc-CcCCCcc--CcceEEEEee---hhcCcceeeEEEEccCCCCeeeEecCCce------EEEEEeeecC
Confidence 566677643311 2333432 3358999987 4457778899999987 367777754332 3345556788
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCC---Cc
Q 002194 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP---PA 332 (954)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~---~~ 332 (954)
+.++|+.. .+ ....||.++ .|..+.|.. .+
T Consensus 114 k~vvF~Ga--------------------se--------------------------d~~~LYvie-gGklrkL~~vPpFs 146 (313)
T d2hu7a1 114 EAVVFTGA--------------------TE--------------------------DRVALYALD-GGGLRELARLPGFG 146 (313)
T ss_dssp SCEEEEEE--------------------CS--------------------------SCEEEEEEE-TTEEEEEEEESSCE
T ss_pred ceEEEecc--------------------cC--------------------------CceEEEEEe-CCceeeeccCCCcc
Confidence 88988821 00 123355555 666665543 24
Q ss_pred cccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002194 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (954)
Q Consensus 333 ~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~ 412 (954)
.++++ .|++|+-..--.+. +...++.|+..+..+-++...+ .+.....+++.|-
T Consensus 147 FVtDI----~~d~I~G~g~~~g~---------~~sfF~adl~SG~lri~tpkeG-------------S~~~ay~~~gnKV 200 (313)
T d2hu7a1 147 FVSDI----RGDLIAGLGFFGGG---------RVSLFTSNLSSGGLRVFDSGEG-------------SFSSASISPGMKV 200 (313)
T ss_dssp EEEEE----ETTEEEEEEEEETT---------EEEEEEEETTTEEEEEECCSSE-------------EEEEEEECTTSCE
T ss_pred eEEec----cCCeEEEEeeecCC---------cceEEEEecccCCEEEecCCCC-------------cccceeEccCcee
Confidence 44333 37787765543322 2257888887777777776432 2234556776653
Q ss_pred ceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccC--------ceeeccCCceEEEEEeccccceEEE
Q 002194 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYG--------GISWCDDSLALVYESWYKTRRTRTW 484 (954)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~--------~~~~spDg~~l~~~~~~~~~~~~l~ 484 (954)
+--.+. -....+..+|. ..++..++.-...++. .+-+.||++.++.+..+ + +.+|+
T Consensus 201 -~sdyEt----------~gEsywit~D~---~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrd-G-~s~lF 264 (313)
T d2hu7a1 201 -TAGLET----------AREARLVTVDP---RDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARRE-G-RSAVF 264 (313)
T ss_dssp -EEEEEE----------SSCEEEEEECT---TTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEET-T-EEEEE
T ss_pred -eeccCC----------CCceEEEEEec---ccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecC-C-chhee
Confidence 211111 11112223443 4455566543333322 23368999876655433 2 25555
Q ss_pred E
Q 002194 485 V 485 (954)
Q Consensus 485 ~ 485 (954)
.
T Consensus 265 ~ 265 (313)
T d2hu7a1 265 I 265 (313)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.29 E-value=0.067 Score=57.44 Aligned_cols=145 Identities=14% Similarity=0.081 Sum_probs=83.5
Q ss_pred EEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcc---cHHHHHHHHCCcEEEEcCC
Q 002194 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIG---STSVLLWLARGFAILGGPT 720 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la~~G~~V~~~~~ 720 (954)
+...++..+.-|++.... ++. ..|+++++-|||.++.-......-+|.....-+ ....-.|....-.|+. +.
T Consensus 26 l~~~~~~~lffw~~~s~~-~~~---~~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~~~~~N~~SW~~~anllfI-Dq 100 (452)
T d1ivya_ 26 LKSSGSKHLHYWFVESQK-DPE---NSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYL-ES 100 (452)
T ss_dssp EECSTTEEEEEEEECCSS-CGG---GSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGGGSSEEEEE-CC
T ss_pred eecCCCceEEEEEEEcCC-CCC---CCCEEEEECCCCcHHHHHHHHHccCCcEEcCCCCeeccCCcchhcccCEEEE-ec
Confidence 344567788888774332 232 379999999999876654444444443332111 0112234444333333 22
Q ss_pred CCCCCCCCcccc----hhhHHHHHHHHHHHH-HHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh---CC-CcccEEEEec
Q 002194 721 TPIIGEGDEEAN----DRFVEQLVACAEAAV-EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH---AP-HLFCCGIARS 791 (954)
Q Consensus 721 ~~~~G~G~~~~~----~~~~~~~~~D~~~av-~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~---~p-~~~~a~v~~~ 791 (954)
. .|-|.|... .........|+.+++ +++...+.....++.|+|-||||..+-.++.. .+ =.++++++.+
T Consensus 101 P--vGtGfS~~~~~~~~~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~Gi~ign 178 (452)
T d1ivya_ 101 P--AGVGFSYSDDKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGN 178 (452)
T ss_dssp S--TTSTTCEESSCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEES
T ss_pred C--CCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccccceEcCC
Confidence 1 244444221 122244556665655 45555555556789999999999988888754 22 2478999998
Q ss_pred cCCC
Q 002194 792 GAYN 795 (954)
Q Consensus 792 ~~~~ 795 (954)
|+.+
T Consensus 179 g~~d 182 (452)
T d1ivya_ 179 GLSS 182 (452)
T ss_dssp CCSB
T ss_pred CccC
Confidence 8755
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.13 E-value=0.096 Score=54.03 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=18.9
Q ss_pred CcEEEEeeChHHHHHHHHHHhC
Q 002194 759 SKIAVGGHSYGAFMTANLLAHA 780 (954)
Q Consensus 759 ~ri~l~G~S~GG~~a~~~a~~~ 780 (954)
+||-|+||||||..+=+++...
T Consensus 105 ~kVnLIgHS~GGld~Ryl~~~l 126 (388)
T d1ku0a_ 105 GRVHIIAHSQGGQTARMLVSLL 126 (388)
T ss_dssp CCEEEEEETTHHHHHHHHHHHH
T ss_pred CceeEeecccccHHHHHHHHHh
Confidence 5899999999999988887653
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.88 E-value=4.2 Score=42.51 Aligned_cols=61 Identities=13% Similarity=0.137 Sum_probs=37.4
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD 409 (954)
....+++|.|||+.++..+. .+.|++++.+++..+.+...+...... ....|...+++.||
T Consensus 27 ~~P~~la~~pdg~llVter~-------------~G~i~~v~~~~g~~~~i~~~~~~~~~~----~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERA-------------TGKILRVNPESGSVKTVFQVPEIVNDA----DGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETT-------------TCEEEEECTTTCCEEEEEECTTCCCCT----TSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEec-------------CCEEEEEECCCCcEeecccCCcccccc----CCCCceeeEEeCCC
Confidence 45668899999986655431 237888888877777666543211000 11234456888886
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=93.74 E-value=4.1 Score=41.18 Aligned_cols=83 Identities=5% Similarity=-0.084 Sum_probs=49.6
Q ss_pred ceEEEEccCCCCCCceeeee--cCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQ--GFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt--~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
.+.+||..+ +...++. ..+........++.+||+.+++- +.+...++++|..++..+.+...+...
T Consensus 53 ~~~~yd~~t----~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~G--------g~~~~~~~~yd~~~~~w~~~~~~~~~r 120 (387)
T d1k3ia3 53 LTSSWDPST----GIVSDRTVTVTKHDMFCPGISMDGNGQIVVTG--------GNDAKKTSLYDSSSDSWIPGPDMQVAR 120 (387)
T ss_dssp EEEEECTTT----CCBCCCEEEECSCCCSSCEEEECTTSCEEEEC--------SSSTTCEEEEEGGGTEEEECCCCSSCC
T ss_pred EEEEEECCC----CcEeecCCCCCCcccceeEEEEecCCcEEEee--------cCCCcceeEecCccCcccccccccccc
Confidence 467888754 2222221 11222234456789999876652 233467889999988877776555432
Q ss_pred ccccccceeEecCCeEEEEE
Q 002194 242 LNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~ 261 (954)
. ....+-.+||+++++.
T Consensus 121 ~---~~~~~~~~dG~v~v~G 137 (387)
T d1k3ia3 121 G---YQSSATMSDGRVFTIG 137 (387)
T ss_dssp S---SCEEEECTTSCEEEEC
T ss_pred c---ccceeeecCCceeeec
Confidence 1 2245566899987765
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.10 E-value=2.2 Score=42.90 Aligned_cols=130 Identities=17% Similarity=0.190 Sum_probs=67.5
Q ss_pred cCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCC
Q 002194 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVP 276 (954)
Q Consensus 197 SPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~ 276 (954)
.+||+..+|+..- ....+..+||.++.++.+.+.+.......+ ....+++...||.. +++-......
T Consensus 107 ~~dg~~~L~vvnH---~~~~~~ieif~~~~~~~~l~~~~~v~~~~~-~~pNDv~~~~~g~f-y~Tnd~~~~~-------- 173 (340)
T d1v04a_ 107 DDDNTVYLLVVNH---PGSSSTVEVFKFQEEEKSLLHLKTIRHKLL-PSVNDIVAVGPEHF-YATNDHYFID-------- 173 (340)
T ss_dssp CTTCCEEEEEEEC---STTCCEEEEEEEETTTTEEEEEEEECCTTC-SSEEEEEEEETTEE-EEEESCSCCS--------
T ss_pred cCCCcEEEEEEec---cCCCceeEEEEEeCCCCeEEEEeecCCccc-cCccceEEecCCCE-EEecCccCcC--------
Confidence 4678766666532 123456677777766655443322222111 11457888889974 4431100000
Q ss_pred CCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-ccccccccCCCCcEEEEEeecCCc
Q 002194 277 LGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPY 355 (954)
Q Consensus 277 ~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~ 355 (954)
...+.....+. ...+.++.++ .++.+.+..+ ....++++|||+++|+++....
T Consensus 174 -------------~~~~~~e~~~~----------~~~g~v~~~~-~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~-- 227 (340)
T d1v04a_ 174 -------------PYLKSWEMHLG----------LAWSFVTYYS-PNDVRVVAEGFDFANGINISPDGKYVYIAELLA-- 227 (340)
T ss_dssp -------------HHHHHHHHHTT----------CCCEEEEEEC-SSCEEEEEEEESSEEEEEECTTSSEEEEEEGGG--
T ss_pred -------------hhhhhhhHhhc----------CCceeEEEEc-CCceEEEcCCCCccceeEECCCCCEEEEEeCCC--
Confidence 00000001111 0233444444 3344444444 6667899999999999887443
Q ss_pred ccccccCCCCcceEEEeccC
Q 002194 356 SFIVPCGRFPRQVGVWTTDG 375 (954)
Q Consensus 356 ~~~~~~~~~~~~l~l~d~~g 375 (954)
..|++|++++
T Consensus 228 ----------~~i~~y~~~~ 237 (340)
T d1v04a_ 228 ----------HKIHVYEKHA 237 (340)
T ss_dssp ----------TEEEEEEECT
T ss_pred ----------CeEEEEEeCC
Confidence 3788888874
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=90.22 E-value=9.4 Score=37.87 Aligned_cols=123 Identities=11% Similarity=-0.026 Sum_probs=62.6
Q ss_pred CCCCcEEEEEeecCCcccccccCCCCcceEEEecc--CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEE
Q 002194 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (954)
Q Consensus 340 SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~ 417 (954)
.+||+..+|+-++... ...|.+++++ +.+.+.+....... .....+++...||+ +|.+
T Consensus 107 ~~dg~~~L~vvnH~~~---------~~~ieif~~~~~~~~l~~~~~v~~~~---------~~~pNDv~~~~~g~--fy~T 166 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGS---------SSTVEVFKFQEEEKSLLHLKTIRHKL---------LPSVNDIVAVGPEH--FYAT 166 (340)
T ss_dssp CTTCCEEEEEEECSTT---------CCEEEEEEEETTTTEEEEEEEECCTT---------CSSEEEEEEEETTE--EEEE
T ss_pred cCCCcEEEEEEeccCC---------CceeEEEEEeCCCCeEEEEeecCCcc---------ccCccceEEecCCC--EEEe
Confidence 5678877776655311 1245555554 44444333221111 12345678888885 3332
Q ss_pred EeccCCCcc------ccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 418 ETQDGGDAK------VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 418 ~~~~~~~~~------~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+........ ........++.++ +++.+.+...-...+++++|||++.|+.+.... .+|+++++++
T Consensus 167 nd~~~~~~~~~~~e~~~~~~~g~v~~~~-----~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~---~~i~~y~~~~ 237 (340)
T d1v04a_ 167 NDHYFIDPYLKSWEMHLGLAWSFVTYYS-----PNDVRVVAEGFDFANGINISPDGKYVYIAELLA---HKIHVYEKHA 237 (340)
T ss_dssp ESCSCCSHHHHHHHHHTTCCCEEEEEEC-----SSCEEEEEEEESSEEEEEECTTSSEEEEEEGGG---TEEEEEEECT
T ss_pred cCccCcChhhhhhhHhhcCCceeEEEEc-----CCceEEEcCCCCccceeEECCCCCEEEEEeCCC---CeEEEEEeCC
Confidence 211111000 0001233455554 455555555545568899999999988886554 3455555544
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=89.23 E-value=12 Score=37.37 Aligned_cols=135 Identities=13% Similarity=0.035 Sum_probs=77.1
Q ss_pred eeecCCCCeEEEEEeeccc--cCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCC
Q 002194 194 VTWSQDGKHLAFSIRIDAE--DSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (954)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~--~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (954)
..-..|||.++|-....+. ........++++|+.+++..++....... .......++.+||+++++...
T Consensus 25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~-~~~~~~~~~~~~g~i~v~Gg~-------- 95 (387)
T d1k3ia3 25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH-DMFCPGISMDGNGQIVVTGGN-------- 95 (387)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC-CCSSCEEEECTTSCEEEECSS--------
T ss_pred EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCc-ccceeEEEEecCCcEEEeecC--------
Confidence 3445688887775532211 11222345788999988765543221110 000124578899987775400
Q ss_pred CCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC---ccccccccCCCCcEEE
Q 002194 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP---AVYTSLDPSPDEKYIL 347 (954)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~---~~~~~~~~SpDGk~l~ 347 (954)
....++++|. ++.-+.+... ......+..+||+.++
T Consensus 96 ----------------------------------------~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v 135 (387)
T d1k3ia3 96 ----------------------------------------DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT 135 (387)
T ss_dssp ----------------------------------------STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEE
T ss_pred ----------------------------------------CCcceeEecCccCcccccccccccccccceeeecCCceee
Confidence 1123567777 6555554432 2334567788999888
Q ss_pred EEeecCCcccccccCCCCcceEEEeccCceEEEeccC
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDL 384 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~ 384 (954)
+...... .....++++||..++....+...
T Consensus 136 ~GG~~~~-------~~~~~~v~~yd~~~~~W~~~~~~ 165 (387)
T d1k3ia3 136 IGGSWSG-------GVFEKNGEVYSPSSKTWTSLPNA 165 (387)
T ss_dssp ECCCCCS-------SSCCCCEEEEETTTTEEEEETTS
T ss_pred ecccccc-------ccccceeeeecCCCCceeecCCC
Confidence 8653322 12344789999998888776553
|
| >d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus [TaxId: 4844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizopus niveus [TaxId: 4844]
Probab=89.23 E-value=0.25 Score=48.08 Aligned_cols=42 Identities=26% Similarity=0.176 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 002194 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (954)
Q Consensus 736 ~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 779 (954)
+....+++..+++.+.+.. ...+|.++|||+||.+|..++..
T Consensus 112 ~~~~~~~i~~~v~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~~ 153 (265)
T d1lgya_ 112 YEQVVNDYFPVVQEQLTAH--PTYKVIVTGHSLGGAQALLAGMD 153 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhC--CCceEEEEecccchHHHHHHHHH
Confidence 3455667777777666553 23589999999999999888764
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.24 E-value=12 Score=36.00 Aligned_cols=144 Identities=8% Similarity=-0.005 Sum_probs=72.6
Q ss_pred eEEEEEe-CC-ceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCC
Q 002194 315 QLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIP 391 (954)
Q Consensus 315 ~l~~~~~-~G-~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p 391 (954)
.|.++|+ +. +.+....+..+.-..|-. -+.|+++.. ..+|-|+++|. ++..+......-
T Consensus 84 ~LQiFnletK~klks~~~~e~VvfWkWis-~~~L~lVT~--------------taVYHW~~~g~s~P~k~fdR~~~L--- 145 (327)
T d1utca2 84 TLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVALVTD--------------NAVYHWSMEGESQPVKMFDRHSSL--- 145 (327)
T ss_dssp EEEEEETTTTEEEEEEECSSCCCEEEESS-SSEEEEECS--------------SEEEEEESSSSCCCEEEEECCGGG---
T ss_pred eEEEEehhHhhhhceEEcCCCcEEEEecC-CCEEEEEcC--------------CceEEEcccCCCCchhhhhhcccc---
Confidence 4667787 44 344444333444455653 456777762 27999999763 333333321110
Q ss_pred ccccccccCccceeeccCCCCceEE-EEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceee--ccCCc
Q 002194 392 IAFNSVRKGMRSINWRSDKPSTLYW-AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW--CDDSL 468 (954)
Q Consensus 392 ~~~~~~~~g~~~~~wspDg~~i~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~--spDg~ 468 (954)
+ ...+-++.-++|+++++.. +...+++ -.+.+-+|.. +.+..+.|.++......+.. .++-.
T Consensus 146 ---~--~~QIInY~~d~~~kW~~l~GI~~~~~~-------i~G~mQLYS~---er~~sQ~ieGhaa~F~~~~~~g~~~~~ 210 (327)
T d1utca2 146 ---A--GCQIINYRTDAKQKWLLLTGISAQQNR-------VVGAMQLYSV---DRKVSQPIEGHAASFAQFKMEGNAEES 210 (327)
T ss_dssp ---T--TCEEEEEEECTTSCEEEEEEEEEETTE-------EEEEEEEEET---TTTEEEEECCSEEEEEEECCTTCSSCE
T ss_pred ---c--CceEEEEEECCCCCEEEEEeEecCCCc-------eeEEEEEEEe---ccCcCccccceeeeeEEEEcCCCCCCc
Confidence 0 0122346677888887776 4444321 1244555553 33444555444333322222 12223
Q ss_pred eEEEEEeccccceEEEEEcCCCC
Q 002194 469 ALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
.|+.-++++....+|.+++++.+
T Consensus 211 ~lf~fa~r~~~~~kLhIiEig~~ 233 (327)
T d1utca2 211 TLFCFAVRGQAGGKLHIIEVGTP 233 (327)
T ss_dssp EEEEEEEEETTEEEEEEEECSCC
T ss_pred eEEEEEECCCCCcEEEEEEcCCC
Confidence 34433344344478888888763
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.69 E-value=0.93 Score=47.43 Aligned_cols=142 Identities=11% Similarity=0.053 Sum_probs=76.2
Q ss_pred CeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCccc--HHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS--TSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
+..+.-|++.... ++.+ .|+||++-|||.++.-......-+|.....-+. ...-.|.... .+|..+..-.+|+
T Consensus 27 ~~~lfyw~~~s~~-~~~~---~Pl~~WlnGGPG~SS~~g~~~e~GP~~i~~~~~~~~N~~sW~~~a-nllfiD~PvGtGf 101 (421)
T d1wpxa1 27 DKHFFFWTFESRN-DPAK---DPVILWLNGGPGCSSLTGLFFELGPSSIGPDLKPIGNPYSWNSNA-TVIFLDQPVNVGF 101 (421)
T ss_dssp CCEEEEEEECCSS-CTTT---SCEEEEECCTTTBCTHHHHHHTTSSEEECTTSCEEECTTCGGGSS-EEEEECCSTTSTT
T ss_pred CceEEEEEEEeCC-CCCC---CCEEEEECCCCcHHHHHHHHHhcCCcEECCCCccccCCccccccc-CEEEEecCCCCCc
Confidence 4578877764332 3333 699999999998766544333333322211110 0111233333 3444332223343
Q ss_pred CCcccch-hhHHHHHHHHHHHHHHHHHc-CCC--CCCcEEEEeeChHHHHHHHHHHh---CC---CcccEEEEeccCCC
Q 002194 727 GDEEAND-RFVEQLVACAEAAVEEVVRR-GVA--HPSKIAVGGHSYGAFMTANLLAH---AP---HLFCCGIARSGAYN 795 (954)
Q Consensus 727 G~~~~~~-~~~~~~~~D~~~av~~l~~~-~~~--d~~ri~l~G~S~GG~~a~~~a~~---~p---~~~~a~v~~~~~~~ 795 (954)
....... .--....+|+.++++...+. +.. ...++.|+|-||||..+-.+|.. .. =.++++++.+|+.+
T Consensus 102 Sy~~~~~~~~~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGng~~d 180 (421)
T d1wpxa1 102 SYSGSSGVSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTD 180 (421)
T ss_dssp CBCSSCCCCSHHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEESCCCC
T ss_pred eecCCccccchHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecCCccc
Confidence 3221111 11234456666666544443 322 23579999999999988777643 11 23789999998766
|
| >d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Feruloyl esterase A species: Aspergillus niger [TaxId: 5061]
Probab=87.65 E-value=0.37 Score=46.66 Aligned_cols=41 Identities=27% Similarity=0.237 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 002194 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (954)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 779 (954)
.....++...++.+.++. ...+|.++|||+||.+|..++..
T Consensus 105 ~~i~~~i~~~i~~~~~~~--~~~~i~vTGHSLGGAlA~L~a~~ 145 (261)
T d1uwca_ 105 ISVQDQVESLVKQQASQY--PDYALTVTGHSLGASMAALTAAQ 145 (261)
T ss_dssp HHHHHHHHHHHHHHHHHS--TTSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhC--CCcceEEeccchhHHHHHHHHHH
Confidence 344566677777776653 22489999999999999987754
|
| >d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Penicillium camembertii [TaxId: 5075]
Probab=87.65 E-value=0.3 Score=47.67 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 002194 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (954)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 779 (954)
.....++...++.+.++. ...+|.++|||+||.+|..++..
T Consensus 117 ~~~~~~i~~~i~~~~~~~--~~~~i~iTGHSLGGAlA~L~a~~ 157 (271)
T d1tiaa_ 117 KLVRDDIIKELKEVVAQN--PNYELVVVGHSLGAAVATLAATD 157 (271)
T ss_pred HHHHHHHHHHHHHHHHhC--CCceEEEeccchHHHHHHHHHHH
Confidence 345566677776666552 23489999999999999988765
|
| >d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
Probab=87.27 E-value=0.4 Score=46.72 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 002194 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (954)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 779 (954)
....+++...++.+.++. ...+|.++|||+||.+|..++..
T Consensus 118 ~~~~~~v~~~v~~~~~~~--~~~~i~vtGHSLGGalA~l~a~~ 158 (269)
T d1tiba_ 118 RSVADTLRQKVEDAVREH--PDYRVVFTGHSLGGALATVAGAD 158 (269)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCcceeeeccchHHHHHHHHHHH
Confidence 344566667776666552 12489999999999999988874
|
| >d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei [TaxId: 4839]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizomucor miehei [TaxId: 4839]
Probab=86.91 E-value=0.43 Score=46.37 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 002194 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (954)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 779 (954)
.....++...+..+.++. ...+|.++|||+||.+|..++..
T Consensus 112 ~~v~~~i~~~i~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~~ 152 (265)
T d3tgla_ 112 GEVQNELVATVLDQFKQY--PSYKVAVTGHSLGGATVLLCALD 152 (265)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCceEEEecccchHHHHHHHHHH
Confidence 445566667766665542 23589999999999999987753
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| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=86.10 E-value=1.2 Score=47.57 Aligned_cols=125 Identities=16% Similarity=0.089 Sum_probs=67.1
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCccc--HHHHHHHHCCcEEEEcCCCCCCCCCCcccc----------hhhHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS--TSVLLWLARGFAILGGPTTPIIGEGDEEAN----------DRFVE 737 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~G~~V~~~~~~~~~G~G~~~~~----------~~~~~ 737 (954)
.|+|||+-|||.++.-......-+|..+..-+. ...-.|... ..+|..+..-.+|+...... .....
T Consensus 67 ~Pl~lWlnGGPGcSS~~g~f~E~GP~~v~~~~~l~~Np~SWn~~-an~lfIDqPvGvGfSy~~~~~~~~~~~~~~~~~~~ 145 (483)
T d1ac5a_ 67 RPLIIWLNGGPGCSSMDGALVESGPFRVNSDGKLYLNEGSWISK-GDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLE 145 (483)
T ss_dssp CCEEEEECCTTTBCTHHHHHHSSSSEEECTTSCEEECTTCGGGT-SEEEEECCSTTSTTCSSCCSSGGGSCTTSSCCSHH
T ss_pred CCEEEEECCCCcHHHHHHHHHccCCeEECCCCceeeCCCccccc-CCEEEEeCCCCcCeeecCCCCccccccccccCCHH
Confidence 599999999998775544334444433321110 011123333 33444332223343322111 11123
Q ss_pred HHHHHHHHHHH-HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-----------C-CcccEEEEeccCCC
Q 002194 738 QLVACAEAAVE-EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-----------P-HLFCCGIARSGAYN 795 (954)
Q Consensus 738 ~~~~D~~~av~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-----------p-~~~~a~v~~~~~~~ 795 (954)
....|+..+++ |+...+..-..++.|+|-||||..+-.+|..- + =.++++++..|..+
T Consensus 146 ~~a~~~~~fl~~f~~~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~~~~inLkGi~IGNg~~d 216 (483)
T d1ac5a_ 146 DVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWID 216 (483)
T ss_dssp HHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTTSCCEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHhCcccccCCeEEeecccccchHHHHHHHHHHhccccccCCCcccceeeeecCCccC
Confidence 44555555554 44444554457899999999998887776431 0 13788888887655
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| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
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class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=85.02 E-value=16 Score=36.05 Aligned_cols=146 Identities=11% Similarity=0.059 Sum_probs=69.3
Q ss_pred eEEEEEeCCceeEcCCCccccc------cccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc--CceEEEeccCCC
Q 002194 315 QLVLVSLDGTVKEIGPPAVYTS------LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPL 386 (954)
Q Consensus 315 ~l~~~~~~G~~~~l~~~~~~~~------~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~~~~l~~~~~ 386 (954)
-|+++|++|+..+....+.+.. +.+.-++.-|++.+++... ...|++|.++ ......+.....
T Consensus 51 Gl~vYdL~G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~---------~~~l~~~~id~~~~~l~~~~~~~~ 121 (353)
T d1h6la_ 51 GLAVYSLEGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEG---------KNTIEIYAIDGKNGTLQSITDPNR 121 (353)
T ss_dssp CCEEEETTCCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTT---------TCEEEEEEEETTTTEEEECSCSSS
T ss_pred CEEEEcCCCcEEEecccCCcCccccccccccCCcceEEEEEeCCcCc---------ceeEEEEEecCccccccccccccc
Confidence 3899999775544443333322 2333334457777766422 1256677665 344444433211
Q ss_pred cccCCccccccccCccceee--ccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc--eEE--eecccccCc
Q 002194 387 AEDIPIAFNSVRKGMRSINW--RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP--EIL--HKLDLRYGG 460 (954)
Q Consensus 387 ~~~~p~~~~~~~~g~~~~~w--spDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~--~~l--~~~~~~~~~ 460 (954)
. ... ....+..+.. +++...++.++... .+.+..|.+.....+.. +.+ ........+
T Consensus 122 p----~~~--~~~~vYGlc~y~~~~~g~~~afv~~k-----------~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EG 184 (353)
T d1h6la_ 122 P----IAS--AIDEVYGFSLYHSQKTGKYYAMVTGK-----------EGEFEQYELNADKNGYISGKKVRAFKMNSQTEG 184 (353)
T ss_dssp C----EEC--SSSSCCCEEEEECTTTCCEEEEEECS-----------SSEEEEEEEEECTTSSEEEEEEEEEECSSCEEE
T ss_pred c----ccc--ccCcceEEEEEecCCCCeEEEEEEcC-----------CceEEEEEEEcCCCCceeeEeeeccCCCCccce
Confidence 1 000 0011234444 56544443332222 22333322211222222 111 122345677
Q ss_pred eeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 461 ISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 461 ~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+++.++.+.|+++.+. ..+|+++.+-
T Consensus 185 CVvDde~~~LyisEE~----~Giw~~~a~~ 210 (353)
T d1h6la_ 185 MAADDEYGSLYIAEED----EAIWKFSAEP 210 (353)
T ss_dssp EEEETTTTEEEEEETT----TEEEEEESST
T ss_pred EEEeCCCCcEEEecCc----cceEEEEecc
Confidence 8888888888887543 2478887653
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| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
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class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=82.64 E-value=7.4 Score=40.48 Aligned_cols=15 Identities=7% Similarity=0.452 Sum_probs=11.5
Q ss_pred cceeEecCCeEEEEE
Q 002194 247 DNFVWVNNSTLLVCT 261 (954)
Q Consensus 247 ~~~~wspDG~~l~~~ 261 (954)
..++|.|||++++..
T Consensus 30 ~~la~~pdg~llVte 44 (450)
T d1crua_ 30 HALLWGPDNQIWLTE 44 (450)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred eEEEEeCCCeEEEEE
Confidence 378899999876643
|