Citrus Sinensis ID: 002204
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 954 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SJK3 | 997 | Protein argonaute 5 OS=Ar | yes | no | 0.973 | 0.931 | 0.588 | 0.0 | |
| Q851R2 | 1058 | Protein argonaute MEL1 OS | yes | no | 0.896 | 0.808 | 0.624 | 0.0 | |
| O04379 | 1048 | Protein argonaute 1 OS=Ar | no | no | 0.949 | 0.864 | 0.580 | 0.0 | |
| Q7XSA2 | 1118 | Protein argonaute 1B OS=O | yes | no | 0.943 | 0.805 | 0.577 | 0.0 | |
| Q6EU14 | 1082 | Protein argonaute 1A OS=O | no | no | 0.970 | 0.855 | 0.560 | 0.0 | |
| Q6K972 | 1011 | Protein argonaute 1C OS=O | no | no | 0.900 | 0.849 | 0.597 | 0.0 | |
| Q5Z5B2 | 1038 | Protein argonaute 1D OS=O | no | no | 0.971 | 0.893 | 0.557 | 0.0 | |
| Q7Y001 | 1049 | Protein argonaute 12 OS=O | no | no | 0.885 | 0.805 | 0.573 | 0.0 | |
| Q9XGW1 | 988 | Protein argonaute 10 OS=A | no | no | 0.892 | 0.861 | 0.574 | 0.0 | |
| Q69VD5 | 979 | Protein argonaute PNH1 OS | no | no | 0.899 | 0.876 | 0.573 | 0.0 |
| >sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2 | Back alignment and function desciption |
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Score = 1153 bits (2982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 582/989 (58%), Positives = 709/989 (71%), Gaps = 60/989 (6%)
Query: 12 DSRHDQPT-QAPAPPFQR------------------------------------GTDRGS 34
D R DQ + Q P Q+ G
Sbjct: 23 DQRQDQSSGQVAWPGLQQSYGGRGGSVSAGRGRGNVGRGENTGDLTATQVPVASAVSGGR 82
Query: 35 HYGSGAAPSSSHAASTSTAP-APSSPSISASAPSSSSVSTL-VEETEQKLTLAALAAATP 92
G+ P+ S A+S+ T A SS S + S ++S L + TE K + +L
Sbjct: 83 GRGNIGDPTFSVASSSKTVSVASSSKEESKNTEVSETMSNLQITSTETKPEMTSL----- 137
Query: 93 PPSSSQAVGFPVRPGFGTVGRKCVVRANHFMVQLAERDIHHYDVSITPWVTSRKINRQII 152
PP+SS+AV FPVRPG GT+G+K +VRANHF+VQ+A+RD++HYDVSI P V S+ +NR ++
Sbjct: 138 PPASSKAVTFPVRPGRGTLGKKVMVRANHFLVQVADRDLYHYDVSINPEVISKTVNRNVM 197
Query: 153 SQLINLYRLTDLGERIPAYDGMKSIYTAGPLPFESKEFIINLPDSDPRPSSSTRLRERQF 212
L+ Y+ + LG + PAYDG KS+YTAGPLPF+SKEF++NL + SS ++R F
Sbjct: 198 KLLVKNYKDSHLGGKSPAYDGRKSLYTAGPLPFDSKEFVVNLAEKRADGSSG---KDRPF 254
Query: 213 RVVIRLASKPDLYTLQQFLRRRHFEAPYEVIQVLAVVLRAAPSEKHTVVGRSFFSTDLGP 272
+V ++ + DLY LQQFL R+ EAPY+ IQVL VVLR PS + VGRSFF T LG
Sbjct: 255 KVAVKNVTSTDLYQLQQFLDRKQREAPYDTIQVLDVVLRDKPSNDYVSVGRSFFHTSLGK 314
Query: 273 -----MGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSASSFYEPILVTEFVQNYC--RDL 325
G+LGDG+EYWRGYFQSLR TQMGLSLNIDVSA SFYEPI+VT+F+ + RDL
Sbjct: 315 DARDGRGELGDGIEYWRGYFQSLRLTQMGLSLNIDVSARSFYEPIVVTDFISKFLNIRDL 374
Query: 326 SHPLSDEVRLKVKKALKGIKVVLTHREYNNSHKITGISSQPMSQLMFTDDSATRMSVIQY 385
+ PL D RLKVKK L+ +KV L H S KI+GISS P+ +L FT + + +V+QY
Sbjct: 375 NRPLRDSDRLKVKKVLRTLKVKLLHWNGTKSAKISGISSLPIRELRFTLEDKSEKTVVQY 434
Query: 386 FRERYNIALQFTSLPALVAGSEARPIYLPMELSRIVAGQRYAKRLNERQVIALLRATCQR 445
F E+YN +++ +LPA+ GS+ RP+YLPMEL +I GQRY KRLNE+QV ALL+ATCQR
Sbjct: 435 FAEKYNYRVKYQALPAIQTGSDTRPVYLPMELCQIDEGQRYTKRLNEKQVTALLKATCQR 494
Query: 446 PREREENIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGREASVN 505
P +RE +I+ + N YN+D ++KEFG+ V L S++AR+LP PMLKYH++G+E VN
Sbjct: 495 PPDRENSIKNLVVKNNYNDD--LSKEFGMSVTTQLASIEARVLPPPMLKYHDSGKEKMVN 552
Query: 506 PGFGQWNMINKKMFNGGRVEVWTCVNFSTRLNRDVAFQFCQGLVDMCNSKGMVFNLRPVI 565
P GQWNMI+KKM NG +V WTCV+FSTR++R + +FC+ L+ MC SKGM F +P I
Sbjct: 553 PRLGQWNMIDKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAI 612
Query: 566 PISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYGRIKRVCETELGIVSQCC 625
P S P IE+AL+D+H R LQLLI+ILPDV+GSYG+IKR+CETELGIVSQCC
Sbjct: 613 PFISCPPEHIEEALLDIHKR----APGLQLLIVILPDVTGSYGKIKRICETELGIVSQCC 668
Query: 626 QPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPG 685
QPRQ ++LN QY ENVALKINVK GGRNTVL DA+++ IPL+TDRPTII GADVTHPQPG
Sbjct: 669 QPRQVNKLNKQYMENVALKINVKTGGRNTVLNDAIRRNIPLITDRPTIIMGADVTHPQPG 728
Query: 686 EDSSPSIAAVVASMDWPEVAKYRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELL 745
EDSSPSIAAVVASMDWPE+ KYRGLVSAQAH EEIIQDLYK +QDPQRG VH G+IRE
Sbjct: 729 EDSSPSIAAVVASMDWPEINKYRGLVSAQAHREEIIQDLYKLVQDPQRGLVHSGLIREHF 788
Query: 746 IAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKR 805
IAFRR+T P RIIFYRDGV E QFSQVLLHEM AIR+AC SL+E Y P VTFV+VQKR
Sbjct: 789 IAFRRATGQIPQRIIFYRDGVSEGQFSQVLLHEMTAIRKACNSLQENYVPRVTFVIVQKR 848
Query: 806 CRTRLFPAENNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAAIQGTSRPTRYHVL 865
TRLFP ++ D+TD+SGNI PGTVVDT+ICHP EFDFYLNSHA IQGTSRP YHVL
Sbjct: 849 HHTRLFPEQHGNRDMTDKSGNIQPGTVVDTKICHPNEFDFYLNSHAGIQGTSRPAHYHVL 908
Query: 866 YDENRFTADGLQVLTNNLCYTYARCTRSVSVVPPAYYAYLAAFRARYYIEDETSAGGSTD 925
DEN FTAD LQ+LTNNLCYTYARCT+SVS+VPPAYYA+LAAFRARYY+E E S GGS+
Sbjct: 909 LDENGFTADQLQMLTNNLCYTYARCTKSVSIVPPAYYAHLAAFRARYYMESEMSDGGSSR 968
Query: 926 GNRSTAERNLAIRPLPVIKDNVKDVMFYC 954
ST I LP IKDNVK+VMFYC
Sbjct: 969 SRSSTTGVGQVISQLPAIKDNVKEVMFYC 997
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Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Associates with siRNAs of various sizes, from 21-24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal cytosine. Probably involved in antiviral RNA silencing. Associates with siRNAs derived from cucumber mosaic virus (CMV). Targeted by the turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO5 function in RNA silencing. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1 | Back alignment and function description |
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| >sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 | Back alignment and function description |
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| >sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 954 | ||||||
| 297734872 | 1032 | unnamed protein product [Vitis vinifera] | 0.900 | 0.832 | 0.712 | 0.0 | |
| 359479401 | 1038 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.903 | 0.830 | 0.712 | 0.0 | |
| 224106886 | 987 | argonaute protein group [Populus trichoc | 0.986 | 0.953 | 0.654 | 0.0 | |
| 255565533 | 987 | eukaryotic translation initiation factor | 0.990 | 0.957 | 0.649 | 0.0 | |
| 224054242 | 904 | argonaute protein group [Populus trichoc | 0.916 | 0.966 | 0.685 | 0.0 | |
| 449520607 | 984 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.940 | 0.911 | 0.653 | 0.0 | |
| 449443600 | 987 | PREDICTED: protein argonaute 5-like [Cuc | 0.914 | 0.883 | 0.657 | 0.0 | |
| 297826159 | 1001 | hypothetical protein ARALYDRAFT_481718 [ | 0.896 | 0.854 | 0.655 | 0.0 | |
| 356544686 | 953 | PREDICTED: protein argonaute 5-like [Gly | 0.941 | 0.942 | 0.622 | 0.0 | |
| 30683679 | 997 | Argonaute family protein [Arabidopsis th | 0.973 | 0.931 | 0.588 | 0.0 |
| >gi|297734872|emb|CBI17106.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1308 bits (3386), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/872 (71%), Positives = 731/872 (83%), Gaps = 13/872 (1%)
Query: 93 PPSSSQAVGFPVRPGFGTVGRKCVVRANHFMVQLAERDIHHYDVSITPWVTSRKINRQII 152
PPS+S+A+ FP RPG+GTVGRKC VRANHF VQ+ +R+ HYDV+ITP V S+ +NR+II
Sbjct: 164 PPSTSKAITFPRRPGYGTVGRKCKVRANHFQVQVDDREFCHYDVTITPEVMSKTLNREII 223
Query: 153 SQLINLYRLTDLGERIPAYDGMKSIYTAGPLPFESKEFIINLPDSDPRPSSSTRLRERQF 212
QL++LY+++ LG+R PAYDG KS+YTAGPLPF SKEF++ L +D + RER+F
Sbjct: 224 KQLVDLYKVSHLGKRSPAYDGSKSLYTAGPLPFTSKEFVVKLVKTD---DGAGPRREREF 280
Query: 213 RVVIRLASKPDLYTLQQFLRRRHFEAPYEVIQVLAVVLRAAPSEKHTVVGRSFFSTDLGP 272
+V I+LASK DLY LQQFL R AP E IQ+L VVLRA+PSEK+TVVGRSFFST LG
Sbjct: 281 KVAIKLASKGDLYQLQQFLCGRQLSAPQETIQILDVVLRASPSEKYTVVGRSFFSTQLGR 340
Query: 273 MGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSASSFYEPILVTEFVQNYC--RDLSHPLS 330
G+LGDG+EYWRGY+QSLRPTQMGLS NIDVSA SFYE ILVT+FV + RD+S LS
Sbjct: 341 KGELGDGLEYWRGYYQSLRPTQMGLSFNIDVSARSFYESILVTDFVAKHLKLRDVSRALS 400
Query: 331 DEVRLKVKKALKGIKVVLTHREYNNSHKITGISSQPMSQLMFT-DDSATRMSVIQYFRER 389
D+ R+KVKKALKG+KV LTHRE+ +KI G+SSQP +QLMFT DD ATR+SV+QYFR++
Sbjct: 401 DQDRIKVKKALKGVKVQLTHREFAKRYKIAGVSSQPTNQLMFTLDDEATRVSVVQYFRQK 460
Query: 390 YNIALQFTSLPALVAGSEARPIYLPMELSRIVAGQRYAKRLNERQVIALLRATCQRPRER 449
YNI L++ S P+L AGS+++PIYLPME+ +IV GQRY ++LN+RQV ALLRATCQRP ER
Sbjct: 461 YNIVLKYPSWPSLQAGSDSKPIYLPMEVCKIVEGQRYTRKLNDRQVTALLRATCQRPSER 520
Query: 450 EENIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGREASVNPGFG 509
E NI+ M R N ++ D +V EFGI++ ++LT VDAR+LP PMLKYH++GREA V+P G
Sbjct: 521 EGNIQEMVRKNNFSTDRVVRDEFGIRINEELTLVDARVLPPPMLKYHDSGREAKVDPRVG 580
Query: 510 QWNMINKKMFNGGRVEVWTCVNFSTRLNRDVAFQFCQGLVDMCNSKGMVFNLRPVIPISS 569
QWNMI+KKM NGG V+ WTC+NFS R+++D+ FC+ LV+MC SKGMVFN P++PI S
Sbjct: 581 QWNMIDKKMVNGGTVQFWTCLNFSFRVHQDLPSGFCRELVNMCVSKGMVFNPNPLLPIQS 640
Query: 570 SNPNQIEKALVDVHNRTT-------QQGKQLQLLIIILPDVSGSYGRIKRVCETELGIVS 622
++PNQIEK LVDVH ++ Q GKQLQLLIIILPDV+GSYG+IKR+CETELGIVS
Sbjct: 641 AHPNQIEKVLVDVHKQSMAKLASMGQNGKQLQLLIIILPDVTGSYGKIKRICETELGIVS 700
Query: 623 QCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHP 682
QCCQP QAS+LN QYFENVALKINVKVGGRNTVL DA+Q++IPLV+D PTIIFGADVTHP
Sbjct: 701 QCCQPSQASKLNKQYFENVALKINVKVGGRNTVLFDAIQRKIPLVSDLPTIIFGADVTHP 760
Query: 683 QPGEDSSPSIAAVVASMDWPEVAKYRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIR 742
QPGEDSSPSIAAVVASMDWPEV KYRGLVSAQ H EEIIQDLYK+ DP +G HGGMIR
Sbjct: 761 QPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQHHREEIIQDLYKTTADPHKGVTHGGMIR 820
Query: 743 ELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVV 802
ELLIAFRRST +KP RIIFYRDGV E QFSQVLLHEM++IR+ACASLEEGY PPVTFVVV
Sbjct: 821 ELLIAFRRSTGYKPSRIIFYRDGVSEGQFSQVLLHEMDSIRKACASLEEGYLPPVTFVVV 880
Query: 803 QKRCRTRLFPAENNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAAIQGTSRPTRY 862
QKR TR FP+++ DLTDRSGNILPGTVVDT+ICHPTEFDFYLNSHA IQGTSRPT Y
Sbjct: 881 QKRHHTRFFPSDHRSRDLTDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHY 940
Query: 863 HVLYDENRFTADGLQVLTNNLCYTYARCTRSVSVVPPAYYAYLAAFRARYYIEDETSAGG 922
HVLYDEN+FTAD LQ+LTNNLCYTYARCTRSVS+VPPAYYA+LAAFRARYYIE +TS G
Sbjct: 941 HVLYDENKFTADILQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGDTSDSG 1000
Query: 923 STDGNRSTAERNLAIRPLPVIKDNVKDVMFYC 954
S G+RST ERNL +R LP +K+NVKDVMFYC
Sbjct: 1001 SGSGDRSTRERNLEVRLLPAVKENVKDVMFYC 1032
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479401|ref|XP_002271699.2| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224106886|ref|XP_002314317.1| argonaute protein group [Populus trichocarpa] gi|222850725|gb|EEE88272.1| argonaute protein group [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255565533|ref|XP_002523757.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223537061|gb|EEF38697.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224054242|ref|XP_002298162.1| argonaute protein group [Populus trichocarpa] gi|222845420|gb|EEE82967.1| argonaute protein group [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449520607|ref|XP_004167325.1| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449443600|ref|XP_004139565.1| PREDICTED: protein argonaute 5-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297826159|ref|XP_002880962.1| hypothetical protein ARALYDRAFT_481718 [Arabidopsis lyrata subsp. lyrata] gi|297326801|gb|EFH57221.1| hypothetical protein ARALYDRAFT_481718 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356544686|ref|XP_003540778.1| PREDICTED: protein argonaute 5-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|30683679|ref|NP_850110.1| Argonaute family protein [Arabidopsis thaliana] gi|322510009|sp|Q9SJK3.2|AGO5_ARATH RecName: Full=Protein argonaute 5 gi|330252961|gb|AEC08055.1| Argonaute family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 954 | ||||||
| TAIR|locus:2057851 | 997 | AGO5 "ARGONAUTE 5" [Arabidopsi | 0.886 | 0.848 | 0.613 | 8.7e-285 | |
| UNIPROTKB|Q851R2 | 1058 | MEL1 "Protein argonaute MEL1" | 0.886 | 0.799 | 0.598 | 3.3e-276 | |
| UNIPROTKB|Q69VD5 | 979 | PHN1 "Protein argonaute PNH1" | 0.892 | 0.869 | 0.551 | 3.2e-255 | |
| TAIR|locus:2170897 | 988 | AGO10 "ARGONAUTE 10" [Arabidop | 0.890 | 0.860 | 0.552 | 3.3e-253 | |
| UNIPROTKB|Q6DJB9 | 871 | eif2c2 "Protein argonaute-2" [ | 0.663 | 0.726 | 0.342 | 6.8e-160 | |
| ZFIN|ZDB-GENE-060503-452 | 867 | ago3b "argonaute RISC catalyti | 0.648 | 0.713 | 0.331 | 2.4e-153 | |
| UNIPROTKB|F1P3Y9 | 853 | EIF2C1 "Uncharacterized protei | 0.661 | 0.739 | 0.331 | 1.3e-152 | |
| UNIPROTKB|F1PGP5 | 857 | EIF2C1 "Uncharacterized protei | 0.661 | 0.736 | 0.331 | 1.7e-152 | |
| UNIPROTKB|Q9UL18 | 857 | EIF2C1 "Protein argonaute-1" [ | 0.661 | 0.736 | 0.331 | 1.7e-152 | |
| UNIPROTKB|F1SV63 | 857 | EIF2C1 "Uncharacterized protei | 0.661 | 0.736 | 0.331 | 1.7e-152 |
| TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2736 (968.2 bits), Expect = 8.7e-285, P = 8.7e-285
Identities = 529/862 (61%), Positives = 638/862 (74%)
Query: 100 VGFPVRPGFGTVGRKCVVRANHFMVQLAERDIHHYDVSITPWVTSRKINRQIISQLINLY 159
V FPVRPG GT+G+K +VRANHF+VQ+A+RD++HYDVSI P V S+ +NR ++ L+ Y
Sbjct: 145 VTFPVRPGRGTLGKKVMVRANHFLVQVADRDLYHYDVSINPEVISKTVNRNVMKLLVKNY 204
Query: 160 RLTDLGERIPAYDGMKSIYTAGPLPFESKEFIINXXXXXXXXXXXXXXXERQFRVVIRLA 219
+ + LG + PAYDG KS+YTAGPLPF+SKEF++N +R F+V ++
Sbjct: 205 KDSHLGGKSPAYDGRKSLYTAGPLPFDSKEFVVNLAEKRADGSSGK---DRPFKVAVKNV 261
Query: 220 SKPDLYTLQQFLRRRHFEAPYEVIQVLAVVLRAAPSEKHTVVGRSFFSTDLGP-----MG 274
+ DLY LQQFL R+ EAPY+ IQVL VVLR PS + VGRSFF T LG G
Sbjct: 262 TSTDLYQLQQFLDRKQREAPYDTIQVLDVVLRDKPSNDYVSVGRSFFHTSLGKDARDGRG 321
Query: 275 QLGDGVEYWRGYFQSLRPTQMGLSLNIDVSASSFYEPILVTEFVQNYC--RDLSHPLSDE 332
+LGDG+EYWRGYFQSLR TQMGLSLNIDVSA SFYEPI+VT+F+ + RDL+ PL D
Sbjct: 322 ELGDGIEYWRGYFQSLRLTQMGLSLNIDVSARSFYEPIVVTDFISKFLNIRDLNRPLRDS 381
Query: 333 VRLKVKKALKGIKVVLTHREYNNSHKITGISSQPMSQLMFTDDSATRMSVIQYFRERYNI 392
RLKVKK L+ +KV L H S KI+GISS P+ +L FT + + +V+QYF E+YN
Sbjct: 382 DRLKVKKVLRTLKVKLLHWNGTKSAKISGISSLPIRELRFTLEDKSEKTVVQYFAEKYNY 441
Query: 393 ALQFTSLPALVAGSEARPIYLPMELSRIVAGQRYAKRLNERQVIALLRATCQRPREREEN 452
+++ +LPA+ GS+ RP+YLPMEL +I GQRY KRLNE+QV ALL+ATCQRP +RE +
Sbjct: 442 RVKYQALPAIQTGSDTRPVYLPMELCQIDEGQRYTKRLNEKQVTALLKATCQRPPDRENS 501
Query: 453 IRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGREASVNPGFGQWN 512
I+ + N YN+D ++KEFG+ V L S++AR+LP PMLKYH++G+E VNP GQWN
Sbjct: 502 IKNLVVKNNYNDD--LSKEFGMSVTTQLASIEARVLPPPMLKYHDSGKEKMVNPRLGQWN 559
Query: 513 MINKKMFNGGRVEVWTCVNFSTRLNRDVAFQFCQGLVDMCNSKGMVFNLRPVIPISSSNP 572
MI+KKM NG +V WTCV+FSTR++R + +FC+ L+ MC SKGM F +P IP S P
Sbjct: 560 MIDKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPP 619
Query: 573 NQIEKALVDVHNRTTXXXXXXXXXXXXXPDVSGSYGRIKRVCETELGIVSQCCQPRQASR 632
IE+AL+D+H R PDV+GSYG+IKR+CETELGIVSQCCQPRQ ++
Sbjct: 620 EHIEEALLDIHKRAPGLQLLIVIL----PDVTGSYGKIKRICETELGIVSQCCQPRQVNK 675
Query: 633 LNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSI 692
LN QY ENVALKINVK GGRNTVL DA+++ IPL+TDRPTII GADVTHPQPGEDSSPSI
Sbjct: 676 LNKQYMENVALKINVKTGGRNTVLNDAIRRNIPLITDRPTIIMGADVTHPQPGEDSSPSI 735
Query: 693 AAVVASMDWPEVAKYRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAFRRST 752
AAVVASMDWPE+ KYRGLVSAQAH EEIIQDLYK +QDPQRG VH G+IRE IAFRR+T
Sbjct: 736 AAVVASMDWPEINKYRGLVSAQAHREEIIQDLYKLVQDPQRGLVHSGLIREHFIAFRRAT 795
Query: 753 NFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFP 812
P RIIFYRDGV E QFSQVLLHEM AIR+AC SL+E Y P VTFV+VQKR TRLFP
Sbjct: 796 GQIPQRIIFYRDGVSEGQFSQVLLHEMTAIRKACNSLQENYVPRVTFVIVQKRHHTRLFP 855
Query: 813 AENNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAAIQGTSRPTRYHVLYDENRFT 872
++ D+TD+SGNI PGTVVDT+ICHP EFDFYLNSHA IQGTSRP YHVL DEN FT
Sbjct: 856 EQHGNRDMTDKSGNIQPGTVVDTKICHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENGFT 915
Query: 873 ADGLQVLTNNLCYTYARCTRSVSVVPPXXXXXXXXXXXXXXIEDETSAGGSTDGNRSTAE 932
AD LQ+LTNNLCYTYARCT+SVS+VPP +E E S GGS+ ST
Sbjct: 916 ADQLQMLTNNLCYTYARCTKSVSIVPPAYYAHLAAFRARYYMESEMSDGGSSRSRSSTTG 975
Query: 933 RNLAIRPLPVIKDNVKDVMFYC 954
I LP IKDNVK+VMFYC
Sbjct: 976 VGQVISQLPAIKDNVKEVMFYC 997
|
|
| UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q6DJB9 eif2c2 "Protein argonaute-2" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-060503-452 ago3b "argonaute RISC catalytic component 3b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P3Y9 EIF2C1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PGP5 EIF2C1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9UL18 EIF2C1 "Protein argonaute-1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SV63 EIF2C1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9UKV8 | AGO2_HUMAN | 3, ., 1, ., 2, 6, ., n, 2 | 0.4089 | 0.8542 | 0.9487 | yes | no |
| O77503 | AGO2_RABIT | 3, ., 1, ., 2, 6, ., n, 2 | 0.4089 | 0.8542 | 0.9702 | yes | no |
| Q7XSA2 | AGO1B_ORYSJ | No assigned EC number | 0.5771 | 0.9433 | 0.8050 | yes | no |
| Q9QZ81 | AGO2_RAT | 3, ., 1, ., 2, 6, ., n, 2 | 0.4056 | 0.8731 | 0.9686 | yes | no |
| Q851R2 | MEL1_ORYSJ | No assigned EC number | 0.6247 | 0.8962 | 0.8081 | yes | no |
| Q8CJG0 | AGO2_MOUSE | 3, ., 1, ., 2, 6, ., n, 2 | 0.4056 | 0.8731 | 0.9686 | yes | no |
| Q9SJK3 | AGO5_ARATH | No assigned EC number | 0.5884 | 0.9737 | 0.9317 | yes | no |
| O74957 | AGO1_SCHPO | No assigned EC number | 0.3144 | 0.8469 | 0.9688 | yes | no |
| Q6DJB9 | AGO2_XENTR | 3, ., 1, ., 2, 6, ., n, 2 | 0.4009 | 0.8542 | 0.9357 | yes | no |
| Q6QME8 | AGO2_BOVIN | 3, ., 1, ., 2, 6, ., n, 2 | 0.4089 | 0.8542 | 0.9476 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 954 | |||
| cd04657 | 426 | cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain | 0.0 | |
| PLN03202 | 900 | PLN03202, PLN03202, protein argonaute; Provisional | 0.0 | |
| pfam02171 | 296 | pfam02171, Piwi, Piwi domain | 1e-105 | |
| smart00950 | 301 | smart00950, Piwi, This domain is found in the prot | 1e-104 | |
| cd04658 | 448 | cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P | 2e-68 | |
| cd02826 | 393 | cd02826, Piwi-like, Piwi-like: PIWI domain | 3e-63 | |
| cd02846 | 114 | cd02846, PAZ_argonaute_like, PAZ domain, argonaute | 8e-32 | |
| pfam02170 | 114 | pfam02170, PAZ, PAZ domain | 4e-28 | |
| pfam08699 | 52 | pfam08699, DUF1785, Domain of unknown function (DU | 3e-22 | |
| smart00949 | 138 | smart00949, PAZ, This domain is named PAZ after th | 1e-10 | |
| cd02825 | 115 | cd02825, PAZ, PAZ domain, named PAZ after the prot | 1e-09 | |
| cd02845 | 117 | cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subf | 1e-05 | |
| TIGR00601 | 378 | TIGR00601, rad23, UV excision repair protein Rad23 | 0.002 |
| >gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily | Back alignment and domain information |
|---|
Score = 579 bits (1496), Expect = 0.0
Identities = 217/452 (48%), Positives = 277/452 (61%), Gaps = 36/452 (7%)
Query: 470 KEFGIQVADDLTSVDARILPAPMLKYHETGREASVNPGFGQWNMINKKMFNGGRVEVWTC 529
KEFGI V+ ++ +V R+LP P LKY +V P G WN+ KK GG + W
Sbjct: 4 KEFGISVSKEMITVPGRVLPPPKLKYG--DSSKTVPPRNGSWNLRGKKFLEGGPIRSWAV 61
Query: 530 VNFSTRLNRDVAFQ----FCQGLVDMCNSKGMVFNLRPVIPISSSNPNQIEKALVDVHNR 585
+NF+ F LV G+ + +S ++E+ +
Sbjct: 62 LNFAGPRRSREERADLRNFVDQLVKTVIGAGI-----NITTAIASVEGRVEELFAKLKQ- 115
Query: 586 TTQQGKQLQLLIIILPD-VSGSYGRIKRVCETELGIVSQCCQPRQASR-LNMQYFENVAL 643
+G+ QL+++ILP S YGRIKR+ +TELGI +QC ++ ++ N QYF NVAL
Sbjct: 116 --AKGEGPQLVLVILPKKDSDIYGRIKRLADTELGIHTQCVLAKKVTKKGNPQYFANVAL 173
Query: 644 KINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGE-DSSPSIAAVVASMDWP 702
KIN+K+GG N L PL+T PT++ GADVTHP PG+ +PSIAAVVAS+DW
Sbjct: 174 KINLKLGGINHSLEP---DIRPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVASVDWH 230
Query: 703 EVAKYRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAFRRSTNFKPHRIIFY 762
A+Y V Q+H +EII DL M+RELL AF+++T P RII+Y
Sbjct: 231 L-AQYPASVRLQSHRQEIIDDL-------------ESMVRELLRAFKKATGKLPERIIYY 276
Query: 763 RDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAENNRCDLTD 822
RDGV E QF+QVL E+ AIR+ACA L GY P +TF+VVQKR TR FP + + D
Sbjct: 277 RDGVSEGQFAQVLNEELPAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDAD--G 334
Query: 823 RSGNILPGTVVDTEICHPTEFDFYLNSHAAIQGTSRPTRYHVLYDENRFTADGLQVLTNN 882
++GN+ PGTVVD I HP EFDFYL SHA IQGT+RPT YHVL+DE FTAD LQ LT N
Sbjct: 335 KNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHYHVLWDEIGFTADELQTLTYN 394
Query: 883 LCYTYARCTRSVSVVPPAYYAYLAAFRARYYI 914
LCYTYARCTRSVS+ PPAYYA+LAA RAR Y+
Sbjct: 395 LCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426
|
Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. Length = 426 |
| >gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216915 pfam02171, Piwi, Piwi domain | Back alignment and domain information |
|---|
| >gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives | Back alignment and domain information |
|---|
| >gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes | Back alignment and domain information |
|---|
| >gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain | Back alignment and domain information |
|---|
| >gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|216914 pfam02170, PAZ, PAZ domain | Back alignment and domain information |
|---|
| >gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) | Back alignment and domain information |
|---|
| >gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >gnl|CDD|239211 cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 954 | |||
| PLN03202 | 900 | protein argonaute; Provisional | 100.0 | |
| KOG1041 | 876 | consensus Translation initiation factor 2C (eIF-2C | 100.0 | |
| KOG1042 | 845 | consensus Germ-line stem cell division protein Hiw | 100.0 | |
| cd04657 | 426 | Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut | 100.0 | |
| cd04658 | 448 | Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain | 100.0 | |
| cd02826 | 393 | Piwi-like Piwi-like: PIWI domain. Domain found in | 100.0 | |
| PF02171 | 302 | Piwi: Piwi domain; InterPro: IPR003165 This domain | 100.0 | |
| cd04659 | 404 | Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI | 100.0 | |
| PF02170 | 135 | PAZ: PAZ domain; InterPro: IPR003100 This domain i | 99.88 | |
| cd02825 | 115 | PAZ PAZ domain, named PAZ after the proteins Piwi | 99.82 | |
| cd02846 | 114 | PAZ_argonaute_like PAZ domain, argonaute_like subf | 99.79 | |
| cd02845 | 117 | PAZ_piwi_like PAZ domain, Piwi_like subfamily. In | 99.75 | |
| PF08699 | 52 | DUF1785: Domain of unknown function (DUF1785); Int | 99.49 | |
| cd02844 | 135 | PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( | 99.39 | |
| COG1431 | 685 | Argonaute homolog, implicated in RNA metabolism [T | 99.18 | |
| cd02843 | 122 | PAZ_dicer_like PAZ domain, dicer_like subfamily. D | 98.6 | |
| PF13032 | 138 | DUF3893: Domain of unknown function (DUF3893) | 89.74 | |
| PF08459 | 155 | UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; I | 87.63 | |
| PRK11617 | 224 | endonuclease V; Provisional | 82.52 |
| >PLN03202 protein argonaute; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-168 Score=1549.16 Aligned_cols=829 Identities=37% Similarity=0.601 Sum_probs=706.2
Q ss_pred CCCcccCCCCCCCCCCCCeEEEEeeEEEEEc--CCcceEEEEEEecC----CCCchHHHHHHHHHHHHHhhhcccCCCce
Q 002204 96 SSQAVGFPVRPGFGTVGRKCVVRANHFMVQL--AERDIHHYDVSITP----WVTSRKINRQIISQLINLYRLTDLGERIP 169 (954)
Q Consensus 96 ~~~~~~~p~RP~~Gt~G~~i~v~tN~f~i~~--~~~~iy~YdV~i~P----~~~~k~~~r~i~~~l~~~~~~~~~~~~~~ 169 (954)
+++...++.|||||+.|++|.|+||||+|.+ ++..+|||||+|.| +++++++++.|++++++++... +.+..+
T Consensus 27 ~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~ 105 (900)
T PLN03202 27 SKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSD-LAGKDF 105 (900)
T ss_pred cccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHh-hCCCce
Confidence 4455578999999999999999999999997 47789999999996 4556778889999888776443 545568
Q ss_pred eeeCCceEEecCCCCCCCceEEEEcCCCCCC-----------CCCc--------ccCCCcEEEEEEEEeeecChHHHHHH
Q 002204 170 AYDGMKSIYTAGPLPFESKEFIINLPDSDPR-----------PSSS--------TRLRERQFRVVIRLASKPDLYTLQQF 230 (954)
Q Consensus 170 ~yDG~~~lys~~~Lp~~~~~~~v~l~~~~~~-----------~~~~--------~~~~~~~~~V~Ik~~~~i~l~~L~~~ 230 (954)
||||+++|||+.+|+.+..++.|++.++.++ +.+. ...+.+.|+|+|++++++++.+|.+|
T Consensus 106 ~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~ 185 (900)
T PLN03202 106 AYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANA 185 (900)
T ss_pred eecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHH
Confidence 9999999999999998666888877642100 0000 00246789999999999999999999
Q ss_pred HhhcCCCCchhHHHHHHHHHhcCCCCC-ccccccccccCCCCCCcccCCceEEEeceeeeeeeccceeEEeeecccccee
Q 002204 231 LRRRHFEAPYEVIQVLAVVLRAAPSEK-HTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSASSFY 309 (954)
Q Consensus 231 l~g~~~~~~~~~iq~Lniilr~~~~~~-~~~~Gr~Ff~~~~~~~~~l~~gle~w~G~~~Svr~~~~~l~LniDvs~~~F~ 309 (954)
|.|.....+.++||+||+|||+.++.. ++.+||+||.+......+++.|+|+|+||++|||+++++|+||||+++++||
T Consensus 186 l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~ 265 (900)
T PLN03202 186 LRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIV 265 (900)
T ss_pred HcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeee
Confidence 999877778899999999999987654 8889999998654445678999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHhhccCCCCCHHHHHHHHHHhcCcEEEEeecCCcceEEEecccCCCCCCcEEecC--C-------Cccc
Q 002204 310 EPILVTEFVQNYCRDLSHPLSDEVRLKVKKALKGIKVVLTHREYNNSHKITGISSQPMSQLMFTDD--S-------ATRM 380 (954)
Q Consensus 310 ~~~~l~d~i~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~~r~~~I~~i~~~~a~~~~F~~~--~-------G~~i 380 (954)
++++|+|+|.++.+. +.....++.++.++|+|++|.++|+ ++.|+|.||++.++++.+|..+ + |++|
T Consensus 266 ~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~lkGl~V~t~~~--~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~i 341 (900)
T PLN03202 266 QPGPVVDFLIANQNV--RDPFQIDWSKAKRMLKNLRVKVSPS--NQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEI 341 (900)
T ss_pred cCCcHHHHHHHhcCc--CCccchhHHHHHHHhcCCEEEEecC--CceEEEeeccCCCCcceEEEcccCCcccccCCcceE
Confidence 999999999887521 1111234567999999999999996 4679999999999999999321 1 3579
Q ss_pred cHHHHHHHHcCCccCCC-CCCeEecCCCCCcccccccceEeccCccccccCCHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 002204 381 SVIQYFRERYNIALQFT-SLPALVAGSEARPIYLPMELSRIVAGQRYAKRLNERQVIALLRATCQRPREREENIRMMARA 459 (954)
Q Consensus 381 Sv~~Yf~~~Y~i~L~~p-~lP~v~~g~~~k~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mik~a~~~P~~R~~~I~~~~~~ 459 (954)
||+|||+++||++|+|| ++|||.+|+..+++|||||||.|+|||+++++|++.|+++||++|+.+|.+|.+.|.++++.
T Consensus 342 Sv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~~~~ 421 (900)
T PLN03202 342 TVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKS 421 (900)
T ss_pred EHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999996 99999999988899999999999999999999999999999999999999999999999998
Q ss_pred ccCCCchhhhhccCeEEcCcceEEeeEEeCCCceeeccCCcccccCCCCCccccccceeecCceeeeeEEEEeCCCCCHH
Q 002204 460 NAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTRLNRD 539 (954)
Q Consensus 460 ~~~~~~~~l~~~fGi~i~~~~~~v~arvL~~P~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~i~~W~vv~~~~~~~~~ 539 (954)
++++.++.|+ +|||+|+++|++|+||+||||+|.|+++. ...|++|+||+++++|+.++.+++|+||+|.++ .
T Consensus 422 ~~~~~~~~l~-~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~---~ 494 (900)
T PLN03202 422 SNYDADPMLR-SCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR---C 494 (900)
T ss_pred hCCCCchHHH-HCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc---h
Confidence 8888889998 99999999999999999999999998743 245789999999999999999999999988643 3
Q ss_pred HHHHHHHHHHHHHhhCCccccCCCeeeccC------CChhhHHHHHHHHHHhhhcCCCCceEEEEEeCCC-CCh-hHHHH
Q 002204 540 VAFQFCQGLVDMCNSKGMVFNLRPVIPISS------SNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDV-SGS-YGRIK 611 (954)
Q Consensus 540 ~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~------~~~~~~~~~L~~~~~~~~~~~~~~~lvlvilp~~-~~~-Y~~IK 611 (954)
+++.|++.|.+.|+.+||.+..+..+.... ...+.++..++.+.++. ...++|||||||++ +.+ |+.||
T Consensus 495 ~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~qlv~vIlp~~~~~~~Y~~IK 571 (900)
T PLN03202 495 DIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKL---PGPPQFLLCILPERKNSDIYGPWK 571 (900)
T ss_pred hHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhc---cCCCeEEEEEEcCCCCcchHHHHH
Confidence 688999999999999999997654321111 11233455555554433 24699999999975 556 99999
Q ss_pred HHhhhccCceeeeeecccccccchhhHHHHHHHHHhhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCCe
Q 002204 612 RVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPS 691 (954)
Q Consensus 612 ~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~ip~~~~~~tmiiG~DV~Hp~~~~~~~pS 691 (954)
++||++.||+||||...+ .++||+.|||||||+||||+||.+..+....+|++.+.+|||||+||+||+++....||
T Consensus 572 ~~~~~~~gV~TQcv~~~~---~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pS 648 (900)
T PLN03202 572 KKNLSEFGIVTQCIAPTR---VNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPS 648 (900)
T ss_pred HHHhhccCcccEEeCccc---cchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCc
Confidence 999999999999996543 47899999999999999999998875444457887778999999999999987644799
Q ss_pred EEEEEeeeCCCcccceEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHHHHhc-CCCCceEEEEecCCChhh
Q 002204 692 IAAVVASMDWPEVAKYRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAFRRST-NFKPHRIIFYRDGVGERQ 770 (954)
Q Consensus 692 iaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~~~-~~~P~~IIiyRDGVsEgq 770 (954)
|||+|||+||+.+++|++.++.|.+++|+|++|+....+. .+++|+.++|+.|++.+ +.+|++||||||||||||
T Consensus 649 iaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~----~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ 724 (900)
T PLN03202 649 IAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDK----DDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQ 724 (900)
T ss_pred eEEEEeccCcccccceeeEEEecCCCceeeeehhcccccc----chHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHH
Confidence 9999999998789999999999999999999875433322 25899999999999875 699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeeecccccCcCCCCCCCCCCCCCCCCceeEeeccccCCCcccEEEeec
Q 002204 771 FSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAENNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSH 850 (954)
Q Consensus 771 ~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KRh~tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh 850 (954)
|.+|+++|+++|++||++++++|+|+||||||+||||||||+.+ +.+||+||||||++||||..||||||||
T Consensus 725 ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~~~N~~pGTvVD~~it~p~~~dFyL~Sh 796 (900)
T PLN03202 725 FNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------SPDNVPPGTVVDNKICHPRNNDFYMCAH 796 (900)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------CCCCCCCceEeccccccCCcceEEEecc
Confidence 99999999999999999998899999999999999999999863 3689999999999999999999999999
Q ss_pred CCcccccccceEEEEecCCCCChhHHHHHHHHhhhcccccCCCccccchhHHHHHHHHHHhhhhccccCCCCCCCCCCCc
Q 002204 851 AAIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSVVPPAYYAYLAAFRARYYIEDETSAGGSTDGNRST 930 (954)
Q Consensus 851 ~~~qGTarPthY~Vl~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~~~a~Rar~~l~~~~~d~~s~~~~~~~ 930 (954)
.++|||||||||+||+||+++++|+||+|||+|||+|+|||++|||||||||||++|+|||+||..+.++++++++++++
T Consensus 797 ~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~~~~~ 876 (900)
T PLN03202 797 AGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGGIT 876 (900)
T ss_pred cccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998543322222222221
Q ss_pred ccccccCCCCccccccCCCCeeeC
Q 002204 931 AERNLAIRPLPVIKDNVKDVMFYC 954 (954)
Q Consensus 931 ~~~~~~~~~~~~v~~~~~~~M~y~ 954 (954)
.........+..||++++++||||
T Consensus 877 ~~~~~~~~~~~~~h~~~~~~Mfy~ 900 (900)
T PLN03202 877 SAGAVPVPELPRLHENVASSMFFC 900 (900)
T ss_pred CCCccccccccccchhhcCCeeeC
Confidence 222222345788999999999998
|
|
| >KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily | Back alignment and domain information |
|---|
| >cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes | Back alignment and domain information |
|---|
| >cd02826 Piwi-like Piwi-like: PIWI domain | Back alignment and domain information |
|---|
| >PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] | Back alignment and domain information |
|---|
| >cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria | Back alignment and domain information |
|---|
| >PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
| >cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
| >PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO | Back alignment and domain information |
|---|
| >cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
| >COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily | Back alignment and domain information |
|---|
| >PF13032 DUF3893: Domain of unknown function (DUF3893) | Back alignment and domain information |
|---|
| >PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products [] | Back alignment and domain information |
|---|
| >PRK11617 endonuclease V; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 954 | ||||
| 4f3t_A | 861 | Human Argonaute-2 - Mir-20a Complex Length = 861 | 1e-162 | ||
| 4ei1_A | 859 | Crystal Structure Of Human Argonaute2 Length = 859 | 1e-162 | ||
| 4g0o_A | 139 | Crystal Structure Of Arabidopsis Thaliana Ago5 Mid | 3e-44 | ||
| 4f1n_A | 1046 | Crystal Structure Of Kluyveromyces Polysporus Argon | 5e-40 | ||
| 2yhb_A | 437 | Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi | 1e-36 | ||
| 3vna_A | 154 | Structural Insights Into Small Rna Sorting And Mrna | 8e-34 | ||
| 4g0p_A | 147 | Crystal Structure Of Arabidopsis Thaliana Ago1 Mid | 3e-33 | ||
| 3vnb_A | 155 | Structural Insights Into Small Rna Sorting And Mrna | 5e-33 | ||
| 4g0x_A | 147 | Crystal Structure Of Arabidopsis Thaliana Ago1 Mid | 2e-31 | ||
| 2yha_A | 388 | Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi | 9e-19 | ||
| 1si2_A | 149 | Crystal Structure Of The Paz Domain Of Human Eif2c1 | 1e-16 | ||
| 1si3_A | 149 | Crystal Structure Of The Paz Domain Of Human Eif2c1 | 3e-16 | ||
| 1r4k_A | 169 | Solution Structure Of The Drosophila Argonaute 1 Pa | 5e-16 | ||
| 4g0m_A | 150 | Crystal Structure Of Arabidopsis Thaliana Ago2 Mid | 2e-07 | ||
| 3luc_A | 138 | Crystal Structure Of Mid Domain From Hago2 Length = | 3e-06 | ||
| 3luk_A | 138 | Crystal Structure Of Mid Domain From Hago2 Length = | 1e-05 | ||
| 1vyn_A | 143 | Structure And Nucleic Acid Binding Of The Drosophil | 5e-05 | ||
| 1r6z_P | 509 | The Crystal Structure Of The Argonaute2 Paz Domain | 9e-05 | ||
| 1t2r_A | 123 | Structural Basis For 3' End Recognition Of Nucleic | 2e-04 | ||
| 3mj0_A | 124 | Crystal Structure Of Drosophia Ago-Paz Domain In Co | 2e-04 |
| >pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 | Back alignment and structure |
|
| >pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 | Back alignment and structure |
| >pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 | Back alignment and structure |
| >pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 | Back alignment and structure |
| >pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 | Back alignment and structure |
| >pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 | Back alignment and structure |
| >pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 | Back alignment and structure |
| >pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 | Back alignment and structure |
| >pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 | Back alignment and structure |
| >pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 | Back alignment and structure |
| >pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 | Back alignment and structure |
| >pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 | Back alignment and structure |
| >pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 | Back alignment and structure |
| >pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 | Back alignment and structure |
| >pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 | Back alignment and structure |
| >pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 | Back alignment and structure |
| >pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A Mbp Fusion) Length = 509 | Back alignment and structure |
| >pdb|1T2R|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids By The Drosophila Argonaute 2 Paz Domain Length = 123 | Back alignment and structure |
| >pdb|3MJ0|A Chain A, Crystal Structure Of Drosophia Ago-Paz Domain In Complex With 3'-End 2'-O-Methylated Rna Length = 124 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 | Back alignment and structure |
|---|
Score = 823 bits (2127), Expect = 0.0
Identities = 349/878 (39%), Positives = 489/878 (55%), Gaps = 46/878 (5%)
Query: 90 ATPPPSSSQAVGFPVRPGFGTVGRKCVVRANHFMVQLAERDIHHYDVSITPWVTSRKINR 149
A PPP A P RP FGT GR ++AN F + + + DI+HY++ I P R++NR
Sbjct: 15 APPPPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNR 74
Query: 150 QIISQLINLYRLTDLGERIPAYDGMKSIYTAGPLPFESKEFIINLPDSDPRPSSSTRLRE 209
+I+ ++ ++ G+R P +DG K++YTA PLP + + + ++
Sbjct: 75 EIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEG-------KD 127
Query: 210 RQFRVVIRLASKPDLYTLQQFLRRRHFEAPYEVIQVLAVVLRAAPSEKHTVVGRSFFSTD 269
R F+V I+ S L L L R P+E IQ L VV+R PS ++T VGRSFF+
Sbjct: 128 RIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTAS 187
Query: 270 LGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSASSFYEPILVTEFVQNYC-----RD 324
G LG G E W G+ QS+RP+ + LNIDVSA++FY+ V EFV +
Sbjct: 188 EGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEE 247
Query: 325 LSHPLSDEVRLKVKKALKGIKVVLTHREYNNS-HKITGISSQPMSQLMFTDD----SATR 379
PL+D R+K K +KG+KV +TH +++ ++ +P S F
Sbjct: 248 QQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVE 307
Query: 380 MSVIQYFRERYNIALQFTSLPALVAGSEARPIYLPMELSRIVAGQRYAKRLNERQVIALL 439
+V QYF++R+ + L++ LP L G E + YLP+E+ IVAGQR K+L + Q ++
Sbjct: 308 CTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMI 367
Query: 440 RATCQRPREREENIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETG 499
RAT + +R+E I + R+ ++N D +EFGI V D++T V R+L P + Y
Sbjct: 368 RATARSAPDRQEEISKLMRSASFNTDP-YVREFGIMVKDEMTDVTGRVLQPPSILYGG-R 425
Query: 500 REASVNPGFGQWNMINKKMFNGGRVEVWTCVNFST--RLNRDVAFQFCQGLVDMCNSKGM 557
+A P G W+M NK+ G ++VW F+ + F + L + GM
Sbjct: 426 NKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGM 485
Query: 558 VFNLRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYGRIKRVCETE 617
+P + + +E + N LQL+++ILP + Y +KRV +T
Sbjct: 486 PIQGQPCFCKYAQGADSVEPMFRHLKN----TYAGLQLVVVILPGKTPVYAEVKRVGDTV 541
Query: 618 LGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGA 677
LG+ +QC Q + R Q N+ LKINVK+GG N +L+ + P V +P I GA
Sbjct: 542 LGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLP---QGRPPVFQQPVIFLGA 598
Query: 678 DVTHPQPGEDSSPSIAAVVASMDWPEVAKYRGLVSAQAHHEEIIQDLYKSIQDPQRGFVH 737
DVTHP G+ PSIAAVV SMD +Y V Q H +EIIQDL
Sbjct: 599 DVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL------------- 644
Query: 738 GGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPV 797
M+RELLI F +ST FKP RIIFYRDGV E QF QVL HE+ AIR+AC LE+ Y P +
Sbjct: 645 AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGI 704
Query: 798 TFVVVQKRCRTRLFPAENNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAAIQGTS 857
TF+VVQKR TRLF ++ + +SGNI GT VDT+I HPTEFDFYL SHA IQGTS
Sbjct: 705 TFIVVQKRHHTRLFC--TDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTS 762
Query: 858 RPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSVVPPAYYAYLAAFRARYYIEDE 917
RP+ YHVL+D+NRF++D LQ+LT LC+TY RCTRSVS+ PAYYA+L AFRARY++ D+
Sbjct: 763 RPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDK 822
Query: 918 --TSAGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMFY 953
SA GS +S + A+ + + M++
Sbjct: 823 EHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYF 860
|
| >4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 | Back alignment and structure |
|---|
| >2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 | Back alignment and structure |
|---|
| >3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 | Back alignment and structure |
|---|
| >1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 | Back alignment and structure |
|---|
| >2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 | Back alignment and structure |
|---|
| >1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 | Back alignment and structure |
|---|
| >2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 | Back alignment and structure |
|---|
| >4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 | Back alignment and structure |
|---|
| >4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 | Back alignment and structure |
|---|
| >4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 | Back alignment and structure |
|---|
| >3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 | Back alignment and structure |
|---|
| >3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} PDB: 1t2r_A 1t2s_A Length = 124 | Back alignment and structure |
|---|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 | Back alignment and structure |
|---|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 | Back alignment and structure |
|---|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Length = 509 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 954 | |||
| 4f3t_A | 861 | Protein argonaute-2; hydrolase/gene regulation, RN | 100.0 | |
| 4f1n_A | 1046 | Kpago; argonaute, RNAI, RNAse H, RNA binding prote | 100.0 | |
| 2yhb_A | 437 | QDE-2, post-transcriptional gene silencing protein | 100.0 | |
| 1yvu_A | 706 | Hypothetical protein AQ_1447; RNAse H fold, RNA bi | 100.0 | |
| 1u04_A | 771 | Argonaute, hypothetical protein PF0537; RNAI, sile | 100.0 | |
| 3ho1_A | 685 | Argonaute; argonaute, protein-DNA-RNA complex, nuc | 100.0 | |
| 2yha_A | 388 | Post-transcriptional gene silencing protein QDE-2; | 100.0 | |
| 2w42_A | 427 | PIWI, putative uncharacterized protein; RNAI, RISC | 100.0 | |
| 4g0x_A | 147 | Protein argonaute 1; MID domain, small RNA 5' nucl | 99.95 | |
| 4g0o_A | 139 | Protein argonaute 5; MID domain, small RNA 5' nucl | 99.94 | |
| 1vyn_A | 143 | Argonaute2; nucleic acid binding, RNA interference | 99.94 | |
| 3luc_A | 138 | Protein argonaute-2; MID domain, ribonucleoprotein | 99.93 | |
| 4g0m_A | 150 | Protein argonaute 2; MID domain, small RNA 5' nucl | 99.92 | |
| 2xfm_A | 150 | MIWI, PIWI-like protein 1; RNA-protein complex, di | 99.9 | |
| 3mj0_A | 124 | Protein argonaute-2; argonaut, PAZ domain, 3'-END | 99.89 | |
| 3qir_A | 148 | PIWI-like protein 2; structural genomics consortiu | 99.88 | |
| 3o7v_X | 124 | PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, | 99.82 | |
| 1r6z_P | 509 | Chimera of maltose-binding periplasmic protein AN | 99.79 | |
| 2qvw_A | 756 | GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral | 98.51 |
| >4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-178 Score=1639.20 Aligned_cols=833 Identities=42% Similarity=0.706 Sum_probs=712.5
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCeEEEEeeEEEEEcCCcceEEEEEEecCCCCchHHHHHHHHHHHHHhhhcccCCCce
Q 002204 90 ATPPPSSSQAVGFPVRPGFGTVGRKCVVRANHFMVQLAERDIHHYDVSITPWVTSRKINRQIISQLINLYRLTDLGERIP 169 (954)
Q Consensus 90 ~~~~~~~~~~~~~p~RP~~Gt~G~~i~v~tN~f~i~~~~~~iy~YdV~i~P~~~~k~~~r~i~~~l~~~~~~~~~~~~~~ 169 (954)
++|+|++++.+.+|.|||+|+.|++|.|+||||+|+++++.+|||||+|.|+.++++++|++++++++.++...|++..+
T Consensus 15 ~~~~~~~~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~ 94 (861)
T 4f3t_A 15 APPPPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKP 94 (861)
T ss_dssp ----------CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCC
T ss_pred CCCCccccccccCCCCCCCCCCCcEEEEEeeeEEEECCCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceE
Confidence 34456777889999999999999999999999999998889999999999999899999999999998876566887778
Q ss_pred eeeCCceEEecCCCCCCCceEEEEcCCCCCCCCCcccCCCcEEEEEEEEeeecChHHHHHHHhhcCCCCchhHHHHHHHH
Q 002204 170 AYDGMKSIYTAGPLPFESKEFIINLPDSDPRPSSSTRLRERQFRVVIRLASKPDLYTLQQFLRRRHFEAPYEVIQVLAVV 249 (954)
Q Consensus 170 ~yDG~~~lys~~~Lp~~~~~~~v~l~~~~~~~~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lnii 249 (954)
||||+++|||+++||++...+++.+..+.+ .+++.|+|+|++++++++.+|.+||.|.....+.++||+||||
T Consensus 95 afDG~~~l~s~~~L~~~~~~~~~~v~~~~~-------~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lnii 167 (861)
T 4f3t_A 95 VFDGRKNLYTAMPLPIGRDKVELEVTLPGE-------GKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVV 167 (861)
T ss_dssp EECSSSEEEESSCCSCSSCEEEEECCC--------------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHH
T ss_pred EEcCcceEEECCcCCCCCcceEEEEecCCC-------CCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHH
Confidence 999999999999999865443343321111 3467899999999999999999999999888889999999999
Q ss_pred HhcCCCCCccccccccccCCCCCCcccCCceEEEeceeeeeeeccceeEEeeeccccceecCccHHHHHHHHhhc-----
Q 002204 250 LRAAPSEKHTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSASSFYEPILVTEFVQNYCRD----- 324 (954)
Q Consensus 250 lr~~~~~~~~~~Gr~Ff~~~~~~~~~l~~gle~w~G~~~Svr~~~~~l~LniDvs~~~F~~~~~l~d~i~~~~~~----- 324 (954)
||+.+++++..+||+||++..+...++++|+|+|+||++|||+++++|+||+|+++++|+++++|+|+|.++++.
T Consensus 168 lr~~~~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~ 247 (861)
T 4f3t_A 168 MRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEE 247 (861)
T ss_dssp HHHHHHHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC-
T ss_pred HHhhccccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccchhh
Confidence 999888889999999999875445678999999999999999999999999999999999999999999998831
Q ss_pred cCCCCCHHHHHHHHHHhcCcEEEEeecCC-cceEEEecccCCCCCCcEE-e-cCCCc--cccHHHHHHHHcCCccCCCCC
Q 002204 325 LSHPLSDEVRLKVKKALKGIKVVLTHREY-NNSHKITGISSQPMSQLMF-T-DDSAT--RMSVIQYFRERYNIALQFTSL 399 (954)
Q Consensus 325 ~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~-~r~~~I~~i~~~~a~~~~F-~-~~~G~--~iSv~~Yf~~~Y~i~L~~p~l 399 (954)
..+++++.++.+++++|+|++|.++|.++ +|+|+|.||++.++.+.+| . +++|+ +|||+|||+++||++|+||+|
T Consensus 248 ~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~l 327 (861)
T 4f3t_A 248 QQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHL 327 (861)
T ss_dssp --CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTS
T ss_pred hccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCC
Confidence 13457788899999999999999999754 4669999999988999999 2 35664 799999999999999999999
Q ss_pred CeEecCCCCCcccccccceEeccCccccccCCHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCCchhhhhccCeEEcCc
Q 002204 400 PALVAGSEARPIYLPMELSRIVAGQRYAKRLNERQVIALLRATCQRPREREENIRMMARANAYNEDTLVNKEFGIQVADD 479 (954)
Q Consensus 400 P~v~~g~~~k~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~~fGi~i~~~ 479 (954)
|||++|++++++|||||||.|+|||++.++|+++|+++||++++..|.+|.+.|.++++.++++.+++|+ +|||+|+++
T Consensus 328 Pll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~-~fGi~i~~~ 406 (861)
T 4f3t_A 328 PCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVR-EFGIMVKDE 406 (861)
T ss_dssp EEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHH-HTTCEECSS
T ss_pred ceEEecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCchHHH-HCCCEEeCC
Confidence 9999998888999999999999999999999999999999999999999999999999998888889998 999999999
Q ss_pred ceEEeeEEeCCCceeeccCCcccccCCCCCccccccceeecCceeeeeEEEEeCC--CCCHHHHHHHHHHHHHHHhhCCc
Q 002204 480 LTSVDARILPAPMLKYHETGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFST--RLNRDVAFQFCQGLVDMCNSKGM 557 (954)
Q Consensus 480 ~~~v~arvL~~P~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~i~~W~vv~~~~--~~~~~~~~~f~~~L~~~~~~~G~ 557 (954)
|++|+||+||||+|.|+++.+ ....|.+|+|++++++|+.++++++|+|++|.. ..+.+.++.|++.|.+.|+.+||
T Consensus 407 ~~~v~gRvL~~P~I~y~~~~~-~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~ 485 (861)
T 4f3t_A 407 MTDVTGRVLQPPSILYGGRNK-AIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGM 485 (861)
T ss_dssp CEEEEEEECCCCCEECCSSSC-CEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred eeEEEEEEecCceEEecCCcc-cccCCCCCceeccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCCc
Confidence 999999999999999986432 234678999999999999999999999999863 24678899999999999999999
Q ss_pred cccCCCeeeccCCChhhHHHHHHHHHHhhhcCCCCceEEEEEeCCCCChhHHHHHHhhhccCceeeeeecccccccchhh
Q 002204 558 VFNLRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQY 637 (954)
Q Consensus 558 ~i~~~p~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~lvlvilp~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~ 637 (954)
.+..+|.+.......+.++..++.+.+.. .+++|||||+|++...|+.||++||++.||+||||+.+++.|.++||
T Consensus 486 ~i~~~p~~~~~~~~~~~~~~~~~~l~~~~----~~~qlvl~Ilp~~~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~ 561 (861)
T 4f3t_A 486 PIQGQPCFCKYAQGADSVEPMFRHLKNTY----AGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQT 561 (861)
T ss_dssp CBCSCCSEEEECCSSSSHHHHHHHHHHHS----TTCCEEEEEESSSCTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHH
T ss_pred ccCCCCeEEEecCchHHHHHHHHHHHhhc----CCCcEEEEEeCCCccHHHHHHHHhcccCCcceEEEEecccccccHHH
Confidence 99765543222223345666666655432 47899999999764449999999999999999999999998889999
Q ss_pred HHHHHHHHHhhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccceEEEEEeccCc
Q 002204 638 FENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAKYRGLVSAQAHH 717 (954)
Q Consensus 638 ~~Ni~lKiN~KlGG~n~~l~~~~~~~ip~~~~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~ 717 (954)
+.||+||||+||||+||.+.+. ..|.+...+|||||+||+||+++....|||||||||+| .++++|.+.+++|.++
T Consensus 562 ~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~ 637 (861)
T 4f3t_A 562 LSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHR 637 (861)
T ss_dssp HHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECS-SSSCCEEEEEEEESTT
T ss_pred HHHHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCCCceEEEEEEEcC-CCcceEEEEEEEcCCC
Confidence 9999999999999999998653 23444568999999999999988667899999999999 7899999999999999
Q ss_pred hhhhhhhhhhcCCCCCccchhhHHHHHHHHHHHhcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCE
Q 002204 718 EEIIQDLYKSIQDPQRGFVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPV 797 (954)
Q Consensus 718 ~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~~~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~i 797 (954)
+|+|++| ++|+.++|+.|++.++.+|++|||||||||||||.+|+++|+++|++||.+++.+|+|+|
T Consensus 638 ~E~i~~l-------------~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~~P~i 704 (861)
T 4f3t_A 638 QEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGI 704 (861)
T ss_dssp CCSCTTH-------------HHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTCCCEE
T ss_pred ccHHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHHHHHHHHHHHHHHhccCCCCcE
Confidence 9999999 999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEEEeeecccccCcCCCCCCCCCCCCCCCCceeEeeccccCCCcccEEEeecCCcccccccceEEEEecCCCCChhHHH
Q 002204 798 TFVVVQKRCRTRLFPAENNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAAIQGTSRPTRYHVLYDENRFTADGLQ 877 (954)
Q Consensus 798 t~Ivv~KRh~tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~Lq 877 (954)
|||||+||||||||+.+.++ ..++.+|++||||||++||||.+||||||||+++|||||||||+||+||+++++|+||
T Consensus 705 t~Ivv~Krh~tRff~~~~~~--~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~d~lq 782 (861)
T 4f3t_A 705 TFIVVQKRHHTRLFCTDKNE--RVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQ 782 (861)
T ss_dssp EEEEEECCSCCCEEESSGGG--CBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCHHHHH
T ss_pred EEEEEEccccceeeecCCcc--cccccCCCCCceeccCccccCCCCEEEEEEEecccccccCceEEEEeCCCCCCHHHHH
Confidence 99999999999999987532 2467899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccccCCCccccchhHHHHHHHHHHhhhhcccc--CCCCCCCCCCCcccccccCCCCccccccCCCCeeeC
Q 002204 878 VLTNNLCYTYARCTRSVSVVPPAYYAYLAAFRARYYIEDET--SAGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMFYC 954 (954)
Q Consensus 878 ~lTy~LC~~y~r~t~sVsiPaP~yYA~~~a~Rar~~l~~~~--~d~~s~~~~~~~~~~~~~~~~~~~v~~~~~~~M~y~ 954 (954)
+|||+|||+|+|||++|||||||||||++|+|||+|+.+.. ++++|++|+.+.............||++++++||||
T Consensus 783 ~lty~Lc~~y~~~t~~vsvpaP~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~M~y~ 861 (861)
T 4f3t_A 783 ILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA 861 (861)
T ss_dssp HHHHHHTTCCTTSSBCCSSCHHHHHHHHHHHHHHHHHCCC----------------CCSTTHHHHTCCCHHHHTTTTTC
T ss_pred HHHHHHhhhhhccCCCCCCchHHHHHHHHHHHHHHhhccccccCCccccccCCCcccchhhhhhhhhhhhhhccCceeC
Confidence 99999999999999999999999999999999999998643 233333332221111111122357999999999997
|
| >4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} | Back alignment and structure |
|---|
| >1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A | Back alignment and structure |
|---|
| >1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A | Back alignment and structure |
|---|
| >3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A | Back alignment and structure |
|---|
| >2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A | Back alignment and structure |
|---|
| >2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A | Back alignment and structure |
|---|
| >4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A | Back alignment and structure |
|---|
| >4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* | Back alignment and structure |
|---|
| >4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A | Back alignment and structure |
|---|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A | Back alignment and structure |
|---|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* | Back alignment and structure |
|---|
| >1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 | Back alignment and structure |
|---|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 954 | ||||
| d1yvua2 | 392 | c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 | 1e-100 | |
| d1w9ha1 | 316 | c.55.3.10 (A:93-408) Hypothetical protein AF1318 { | 9e-68 | |
| d1u04a2 | 447 | c.55.3.10 (A:324-770) Argonaute homologue PF0537 { | 2e-61 | |
| d1si2a_ | 126 | b.34.14.1 (A:) Eukaryotic translation initiation f | 4e-30 | |
| d1t2sa_ | 123 | b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila | 9e-29 | |
| d1u04a1 | 322 | b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py | 7e-12 |
| >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: PIWI domain domain: Argonaute homologue Aq 1447 species: Aquifex aeolicus [TaxId: 63363]
Score = 316 bits (812), Expect = e-100
Identities = 62/406 (15%), Positives = 132/406 (32%), Gaps = 70/406 (17%)
Query: 522 GRVEVWTCVNFSTRLNRDVAFQ---FCQGLVDMCNSKGMVFNLRPVIPISSSNPNQIEKA 578
+ +V + S + + + ++ F + L++ +KG+ ++ I + + ++
Sbjct: 33 VKKDVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEK 92
Query: 579 LVDVHNRTTQQGKQLQLLIIILPDVSGS--------YGRIKRVCETELGIVSQCCQPRQA 630
L+ V N+ K + L+I+ L + Y +KR + I SQ R
Sbjct: 93 LIPVINKI----KDVDLVIVFLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTL 147
Query: 631 SRLN-MQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSS 689
N NVA ++ K G L + + + G D++ +
Sbjct: 148 KNENLKFVLLNVAEQVLAKTGNIPYKLKE--------IEGKVDAFVGIDISRITRDGKTV 199
Query: 690 PSIAAVVASMDWPEVAKYRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAFR 749
++A E+ +Y L S A E++ + I ++
Sbjct: 200 NAVAFTKIFNSKGELVRYY-LTSYPAFGEKLTEK----------------AIGDVFSLLE 242
Query: 750 RSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTR 809
+ K +I+ +RDG + E+ A ++ E Y + + + KR R
Sbjct: 243 KLGFKKGSKIVVHRDGR-------LYRDEVAAFKKYG----ELYGYSLELLEIIKRNNPR 291
Query: 810 LFPAENNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAAIQGTSRPTRYHVLYDEN 869
F + + G + + +GT +P + +Y E
Sbjct: 292 FFS-----------NEKFIKGYFYK----LSEDSVILATYNQVYEGTHQPIKVRKVYGEL 336
Query: 870 RFTADGLQVLTNNLCYTYARCTRSVSVVPPAYYAYLAAFRARYYIE 915
+ L +L + + + +Y+ IE
Sbjct: 337 --PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIE 380
|
| >d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 | Back information, alignment and structure |
|---|
| >d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 | Back information, alignment and structure |
|---|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 | Back information, alignment and structure |
|---|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 954 | |||
| d1yvua2 | 392 | Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax | 100.0 | |
| d1u04a2 | 447 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 100.0 | |
| d1w9ha1 | 316 | Hypothetical protein AF1318 {Archaeoglobus fulgidu | 100.0 | |
| d1u04a1 | 322 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 99.97 | |
| d1si2a_ | 126 | Eukaryotic translation initiation factor 2C 1, EIF | 99.91 | |
| d1t2sa_ | 123 | Argonaute 2 {Fruit fly (Drosophila melanogaster) [ | 99.9 |
| >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: PIWI domain domain: Argonaute homologue Aq 1447 species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=3.2e-63 Score=560.54 Aligned_cols=335 Identities=18% Similarity=0.178 Sum_probs=269.6
Q ss_pred eeeeEEEEeC-CCCCHHHHHHHHHHHHHHHhhCCccccCCCeeeccCCChhhHHHHHHHHHHhhhcCCCCceEEEEEeCC
Q 002204 524 VEVWTCVNFS-TRLNRDVAFQFCQGLVDMCNSKGMVFNLRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPD 602 (954)
Q Consensus 524 i~~W~vv~~~-~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~lvlvilp~ 602 (954)
+-+|.+|.+. .+..+..+++|+++|.+.|+.+||++...+...+......+.+..|.+.+++. ..+++++||+|+
T Consensus 37 ~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~vi~~~ 112 (392)
T d1yvua2 37 VLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVINKI----KDVDLVIVFLEE 112 (392)
T ss_dssp EEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEEEECSSTTHHHHHHHHHHTTT----SSCSEEEEEEC-
T ss_pred cccceEEEEEEeehhhhHHHHHHHHHHHHHHhcCceecCCCcCeeecCCccchHHHHHHHHhhc----cCCCEEEEEEcC
Confidence 4567766542 12356678999999999999999999755444444444455666677766654 578999999987
Q ss_pred CCC-------h-hHHHHHHhhhccCceeeeeecccccccchh-hHHHHHHHHHhhcCCcceeecccccccCCccCCCCeE
Q 002204 603 VSG-------S-YGRIKRVCETELGIVSQCCQPRQASRLNMQ-YFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTI 673 (954)
Q Consensus 603 ~~~-------~-Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q-~~~Ni~lKiN~KlGG~n~~l~~~~~~~ip~~~~~~tm 673 (954)
... + |+.||++| .+.||+||||..+++.+.+.+ ++.||++|||+||||+||.|.+ .| ..+||
T Consensus 113 ~~~~~~~~~~~~Y~~IK~~~-~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~-----~~---~~~tm 183 (392)
T d1yvua2 113 YPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKE-----IE---GKVDA 183 (392)
T ss_dssp ---------CHHHHHHHHHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESC-----CT---TCCSE
T ss_pred CCCcccccchhHHHHHHHHH-hcCCcccEEEChhhccCCCchHHHHHHHHHHHHHhCCcceECCC-----CC---CCCeE
Confidence 654 5 99999987 789999999999999876655 5789999999999999999853 22 26799
Q ss_pred EEEEeecCCCCCCCCCCeEEEEEeeeCCCcccceEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHHHHhcC
Q 002204 674 IFGADVTHPQPGEDSSPSIAAVVASMDWPEVAKYRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAFRRSTN 753 (954)
Q Consensus 674 iiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~~~~ 753 (954)
|||+||+|++++.. .++++|++++.|......++.....|..++|++ .+++.++|..|+++++
T Consensus 184 iIGiDv~h~~~~~~-~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~----------------~~~~~~~l~~~~~~~~ 246 (392)
T d1yvua2 184 FVGIDISRITRDGK-TVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLT----------------EKAIGDVFSLLEKLGF 246 (392)
T ss_dssp EEEECEEECCCSSS-CCCEEEEEEEECTTSCEEEEEEEEECSCTTHHH----------------HHHHHHHHHHHHHTTC
T ss_pred EEEEEEEecCCCCC-cccEEEEEEEEcCCCCEEEEEEEecCCccHHHH----------------HHHHHHHHHHHHHhcC
Confidence 99999999987654 445555555555122334555567777788776 5667889999999999
Q ss_pred CCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeeecccccCcCCCCCCCCCCCCCCCCceeEe
Q 002204 754 FKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAENNRCDLTDRSGNILPGTVV 833 (954)
Q Consensus 754 ~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KRh~tRff~~~~~~~~~~~~~~N~~pGTVV 833 (954)
.+|++|||||||+.. ++|+++|++||+++ .|+|+||+|+||||+|||+. +|+++||+|
T Consensus 247 ~~P~rIIi~RdG~~~-------~~El~~i~~a~~~~----~pki~~IvV~Krh~~Rff~~-----------~~~~~Gt~v 304 (392)
T d1yvua2 247 KKGSKIVVHRDGRLY-------RDEVAAFKKYGELY----GYSLELLEIIKRNNPRFFSN-----------EKFIKGYFY 304 (392)
T ss_dssp CTTCEEEEEESSCCC-------HHHHHHHHHHHHHH----TCEEEEEEEECSSCCCEECS-----------CSCCTTEEE
T ss_pred CCCceEEEEeCCCCc-------HHHHHHHHHHHHhc----CCcEEEEEEEecCCeeecCC-----------CCCCCCCEE
Confidence 999999999999865 56999999999875 58999999999999999974 356689988
Q ss_pred eccccCCCcccEEEeecCCcccccccceEEEEecCCCCChhHHHHHHHHhhhcccccCCCccccchhHHHHHHHHHHhhh
Q 002204 834 DTEICHPTEFDFYLNSHAAIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSVVPPAYYAYLAAFRARYY 913 (954)
Q Consensus 834 D~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~~~a~Rar~~ 913 (954)
+ .+..++|||+||.+.|||+||+||+|++||+ +.|+||++||+|||+|+|||++||+|+|+||||++|+|+|.+
T Consensus 305 ~----~~~~~~~~~~s~~~~qGT~rP~~Y~vl~d~~--~~d~l~~lt~~Lc~l~~~~t~svslPapi~YA~~lA~~~r~~ 378 (392)
T d1yvua2 305 K----LSEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRG 378 (392)
T ss_dssp E----BSSSEEEECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTC
T ss_pred e----CCCCeEEEEEcCCcCCCCCCCcEEEEECCCC--CHHHHHHHHHHHHhhccCcCCCCeeCHHHHHHHHHHHHHhhc
Confidence 5 5678999999999999999999999999986 569999999999999999999999999999999999999998
Q ss_pred hcc
Q 002204 914 IED 916 (954)
Q Consensus 914 l~~ 916 (954)
+++
T Consensus 379 ~~p 381 (392)
T d1yvua2 379 IEP 381 (392)
T ss_dssp SSC
T ss_pred CCc
Confidence 874
|
| >d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|