Citrus Sinensis ID: 002205

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950---
MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSSRESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHEEEcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHcccccHHHHcHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccHHHHHHHHHHHcccHHHHcccEEEEEEcccccccccccccccHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHccccccccHHHHHHHcccccccccccHHHHHHHHHHHcccHHHHHHHcc
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEccccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEccHHHHHHHHHHHcccHHHHccEEEEEEccccccccccccccHHHHHHHHHHHHHHcccccccEEEccccEEEcccccccHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccHHHHHcccHHHHHHHHHHHcccccccccccEcEEccccccccccEEccccHHHcEcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHcccccccHHHHHHcccEccccccccHHHHHHHHHHHcccHHHHHHHcc
mffsgdpttrkrvdlggrsskerDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIqnvnrqcfgpqsaFFRQLFFFfnarnvsdISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDqlfvtpeesntpptLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIphigqkpcicpnidprwsffsqiltipflwHLFPYIKEvfatgrtsqHYIHQMALCVQNhanvlphevsmelpgYACLLGNILETagvalsqpdcsfemGVDLAAITTFLLkalppikssressmvsdddmtagdevmepvINRDLEKQITSAIDSRFLLQLTNVLFSgfhllrgphdegpgdkeVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCheirkwpflpylsgdapgwllplavfcpvykhmltivdneefyeqekplslkDIRHLIVILREALWHLLwlnptshpnvgksvsspppankmlpaeAIQHRVSTVASEVLSQLQDwnnrrefvppsdfhadgvndffisqatidgtraneilkqapflvpftSRAKIFQSQLASVRqrhgshgvftrsrfRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNElgveeagidgggiFKDFMENITRAAFDVQYGlfketsdhllypnpgsgmiheQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNylndlpsldpeLYRHLIFLKHYEADISELELYFVILNNeygeqteeellpggknirvtNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLIsgsldsldfddlrqntnyvggyhsEHYVIEMFWEVLKSFSLENQKKFLK
mffsgdpttrkrvdlggrsskerdrqklleqtrlernrrlylrrqnhaaikiqkcfrgkkAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTpeesntpptLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKAlppikssressmvsdddmtagDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLasvrqrhgshgvftrsrfrirrDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLenqkkflk
MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTrlernrrlylrrQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAffrqlffffNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSSRESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHElqllisgsldsldfddlRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK
**************************************RLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVT******PPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKAL***************************INRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHD****DKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNP*******************************VASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYS********DLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFS*********
MFF*******************************************HAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTG*************SSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQN*************PGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKA********************************LEKQITSAIDSRFLLQLTNVLFSGF*****************AVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRC****************PGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTS***************************STVASEVLSQLQDWNNRREFVPPSDFHADGVND******************QAPFLVPFTSRAKIFQSQLA****************FRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK
************************RQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIK*************TAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHP**********PANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQS************GVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSL********
*************************QKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPI*********************EPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSSRESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query953 2.2.26 [Sep-21-2011]
Q8RWB81029 E3 ubiquitin-protein liga yes no 0.994 0.921 0.708 0.0
Q80U951083 Ubiquitin-protein ligase yes no 0.956 0.842 0.283 9e-84
Q153861083 Ubiquitin-protein ligase yes no 0.955 0.841 0.279 5e-82
Q7Z3V41068 Ubiquitin-protein ligase no no 0.516 0.460 0.343 3e-80
Q08CZ01072 Ubiquitin-protein ligase yes no 0.532 0.472 0.341 3e-80
Q9ES341070 Ubiquitin-protein ligase no no 0.516 0.459 0.341 5e-80
Q9SCQ21142 E3 ubiquitin-protein liga no no 0.461 0.385 0.338 1e-72
Q1K9C41029 Probable E3 ubiquitin pro yes no 0.463 0.429 0.351 2e-72
Q8GY233681 E3 ubiquitin-protein liga no no 0.325 0.084 0.376 9e-51
Q8H0T43658 E3 ubiquitin-protein liga no no 0.325 0.084 0.373 6e-50
>sp|Q8RWB8|UPL6_ARATH E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1 Back     alignment and function desciption
 Score = 1423 bits (3684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 679/959 (70%), Positives = 786/959 (81%), Gaps = 11/959 (1%)

Query: 1   MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKK 60
           MFFSGDP+TRKRVDLGGRS+KERD +KLLEQTR+ERNRRL  ++QN AA+KIQK FRG++
Sbjct: 1   MFFSGDPSTRKRVDLGGRSTKERDARKLLEQTRMERNRRLLQKQQNSAALKIQKFFRGRR 60

Query: 61  AMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRL 120
           +M IE SKVR  F  TYG + QNV+R CF P S+F RQ  FFF A+N  D  +LVETCRL
Sbjct: 61  SMAIERSKVRHDFCETYGNNCQNVDRHCFEPGSSFLRQFLFFFKAQNSGDFVILVETCRL 120

Query: 121 MKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEES 180
           ++ FV  SGD+V LF+G+DYSS+  LVDFRVKK AF CI+A+HQNR  L+DQL VTPEE+
Sbjct: 121 LQSFVDSSGDIVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLVTPEEA 180

Query: 181 NTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISS 240
           +    +L+EAV  L+D +LPW CK+VSYL +R VF L+RE++ T KES    +  G I S
Sbjct: 181 SISTAILMEAVSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAKESPRGKTMTGNILS 240

Query: 241 LERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIH 300
           LERVL LI+PHIG++PC C  +DPRWSF S ILTIP +W LFP +K VFA    SQHYIH
Sbjct: 241 LERVLILIVPHIGREPCCCTVVDPRWSFSSMILTIPLIWKLFPNLKVVFANPSLSQHYIH 300

Query: 301 QMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLL 360
           QMA C+Q    VLP E S E PGYACLLGN L+TA V LSQP+CS +M +D+A + TF L
Sbjct: 301 QMASCIQKDTCVLPMETSPEFPGYACLLGNTLDTANVVLSQPECSLDMAIDIALVATFFL 360

Query: 361 KALPPIKSSRESSM--VSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSG 418
           + LPP+KSS   S    SD+D    D+V   V+N+ LE+QIT+AIDSRFLLQLTNVLF  
Sbjct: 361 ETLPPVKSSEGESRQGSSDEDDMLIDDVPGLVLNKALEQQITNAIDSRFLLQLTNVLFRQ 420

Query: 419 FHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRC 478
             L    +DE   DKE  A+G A +FL+ AFNTLPLE IMT+LAYRTELV +LW+YMKRC
Sbjct: 421 VSLGMQSYDE---DKEALAIGTASSFLYAAFNTLPLERIMTILAYRTELVAVLWNYMKRC 477

Query: 479 HEIRKWPFLP----YLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRH 534
           HE +KW  +P    YL GDAPGWLLPL VFCPVYKHML IVDNEEFYE+EKPLSL+DIR 
Sbjct: 478 HENQKWSSMPKLLAYLPGDAPGWLLPLVVFCPVYKHMLMIVDNEEFYEREKPLSLQDIRL 537

Query: 535 LIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDW 594
           LI+IL++ALW LLW+NP + PN GKSVS+    +K  P E IQ+R+  V SE+LSQLQDW
Sbjct: 538 LIIILKQALWQLLWVNPLTQPNTGKSVSND--LSKKNPIELIQNRMGIVVSELLSQLQDW 595

Query: 595 NNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVR 654
           NNR++F   SDF AD VN++FISQA ++GTRAN IL QAPFL+PFTSR KIF +QLA+ R
Sbjct: 596 NNRKQFTSSSDFQADSVNEYFISQAIMEGTRANYILMQAPFLIPFTSRVKIFTTQLATAR 655

Query: 655 QRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGG 714
           Q HGS G+F R+RFRIRRDHILEDAY+QMS +SE+DLR +IRVTFVNELGVEEAGIDGGG
Sbjct: 656 QSHGSQGIFARNRFRIRRDHILEDAYNQMSALSEDDLRSSIRVTFVNELGVEEAGIDGGG 715

Query: 715 IFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEG 774
           IFKDFME ITRAAFDVQYGLFKET+DH+LYPNPGSGMIHEQHLQFFHFLG LLAKAMFEG
Sbjct: 716 IFKDFMEKITRAAFDVQYGLFKETADHMLYPNPGSGMIHEQHLQFFHFLGSLLAKAMFEG 775

Query: 775 ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEY 834
           ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLK Y+ DIS+LELYFVILNNEY
Sbjct: 776 ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKRYKGDISDLELYFVILNNEY 835

Query: 835 GEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDM 894
           GE+TEEELLPGG+++RVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLI K+WIDM
Sbjct: 836 GERTEEELLPGGQDMRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIPKEWIDM 895

Query: 895 FNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK 953
           FNEHELQ+LISGS+DSLD DDLR NTNY GGYH+ HYVI+MFWEV+KSFS ENQKKFLK
Sbjct: 896 FNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLK 954
Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q80U95|UBE3C_MOUSE Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ube3c PE=2 SV=2 Back     alignment and function description
>sp|Q15386|UBE3C_HUMAN Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3 Back     alignment and function description
>sp|Q7Z3V4|UBE3B_HUMAN Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=3 Back     alignment and function description
>sp|Q08CZ0|UBE3B_XENTR Ubiquitin-protein ligase E3B OS=Xenopus tropicalis GN=ube3b PE=2 SV=1 Back     alignment and function description
>sp|Q9ES34|UBE3B_MOUSE Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ube3b PE=2 SV=3 Back     alignment and function description
>sp|Q9SCQ2|UPL7_ARATH E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1 Back     alignment and function description
>sp|Q1K9C4|YFK7_SCHPO Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC167.07c PE=2 SV=1 Back     alignment and function description
>sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3 Back     alignment and function description
>sp|Q8H0T4|UPL2_ARATH E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query953
3594770931034 PREDICTED: E3 ubiquitin-protein ligase U 0.994 0.916 0.747 0.0
3594770951016 PREDICTED: E3 ubiquitin-protein ligase U 0.980 0.919 0.741 0.0
2241088021027 predicted protein [Populus trichocarpa] 0.993 0.922 0.742 0.0
255556492 1067 ubiquitin-protein ligase, putative [Rici 0.995 0.889 0.755 0.0
3565559691031 PREDICTED: E3 ubiquitin-protein ligase U 0.994 0.919 0.721 0.0
2978303421029 hypothetical protein ARALYDRAFT_479191 [ 0.994 0.921 0.714 0.0
3565217191026 PREDICTED: E3 ubiquitin-protein ligase U 0.995 0.924 0.717 0.0
794052971029 E3 ubiquitin-protein ligase UPL6 [Arabid 0.994 0.921 0.708 0.0
3565649801026 PREDICTED: E3 ubiquitin-protein ligase U 0.995 0.924 0.710 0.0
1865101631015 E3 ubiquitin-protein ligase UPL6 [Arabid 0.982 0.922 0.704 0.0
>gi|359477093|ref|XP_003631936.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 1 [Vitis vinifera] gi|296083205|emb|CBI22841.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1513 bits (3916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 721/964 (74%), Positives = 825/964 (85%), Gaps = 16/964 (1%)

Query: 1   MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKK 60
           MFFSGD +TRKRVDLGGRSSKERDRQKLLEQTRLERNRR +LR+QN AA++IQKCFRG+K
Sbjct: 1   MFFSGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRWWLRQQNSAALRIQKCFRGRK 60

Query: 61  AMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRL 120
           A+E EH+KVREQFF TYGRH QNV+R  FGP S F RQL FFF+ARNV D S LVETCRL
Sbjct: 61  AVEAEHAKVREQFFTTYGRHCQNVDRHSFGPDSEFLRQLLFFFDARNVGDFSALVETCRL 120

Query: 121 MKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEES 180
           +++FV++SGD V LFAG+DYSSK ALVD+RVK+ A+ACIQAVHQNR + K QL +T +E 
Sbjct: 121 LQNFVRDSGDAVNLFAGMDYSSKNALVDYRVKQLAYACIQAVHQNRNQFKGQLLMTSDEP 180

Query: 181 NTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISS 240
           ++P  LLLEAVV L+DS+LPW CK+V +LL+RN ++LLRE+++T KES+E +S+ GR+ S
Sbjct: 181 SSPTILLLEAVVMLLDSKLPWVCKIVGHLLQRNTYSLLREIVLTAKESVETYST-GRVPS 239

Query: 241 LERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIH 300
           LE +LT++I H+GQ  CICP IDPRWSF SQILTIPFLW LFPY+KEVF     S+HYIH
Sbjct: 240 LECLLTILISHVGQNHCICPIIDPRWSFSSQILTIPFLWALFPYLKEVFMRRGLSEHYIH 299

Query: 301 QMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLL 360
           QMALCVQNH NVLP ++S + PGYACLLGNILETA V  SQPDCS +M +D+AA+ TFLL
Sbjct: 300 QMALCVQNHTNVLPDDISADFPGYACLLGNILETASVFFSQPDCSLDMAIDIAAVMTFLL 359

Query: 361 KALPPIKSS----RESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLF 416
           +ALPP+KSS    +E+S   +D+M  GDE+ME V++RDLE+QI++AID RFLLQLTN LF
Sbjct: 360 QALPPMKSSNRESKENSSGGEDEMAVGDEIMEKVVSRDLEQQISNAIDPRFLLQLTNALF 419

Query: 417 SGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMK 476
            G  L+    +EGP D+EVAA+GAACAFLHV FN LPLE IMTVLAYRTELV LLW ++K
Sbjct: 420 GGISLINHLCEEGPDDREVAAIGAACAFLHVTFNILPLERIMTVLAYRTELVPLLWKFIK 479

Query: 477 RCHEIRKWPFL----PYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDI 532
           RCHE +KW  L     YLSGD PGW LPLAVFCPVYKHMLTIVDNEEFYEQEKPLSL DI
Sbjct: 480 RCHENQKWSSLSEQLAYLSGDMPGWQLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLSDI 539

Query: 533 RHLIVILREALWHLLWLNPTSHPNVGKSVSSPPP---ANKMLPAEAIQHRVSTVASEVLS 589
           R LIVILR+ALW LLW+NP   PN+ K    P P   +++  P E  Q RVS V +E+LS
Sbjct: 540 RCLIVILRQALWQLLWVNPAMPPNLMK----PAPEVTSHRGHPIEFTQQRVSIVTAELLS 595

Query: 590 QLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQ 649
           QLQDWNNRR+F PPS FHAD VN++FISQA I+ TRA  ILKQAPFLVPFTSR KIF SQ
Sbjct: 596 QLQDWNNRRQFAPPSYFHADAVNEYFISQAVIENTRAYTILKQAPFLVPFTSRVKIFTSQ 655

Query: 650 LASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAG 709
           LA+ RQR GSH VFTR+RFRIRRDHILEDA++Q+S +SE+DLRG IR++FVNE GVEEAG
Sbjct: 656 LAAARQRDGSHSVFTRNRFRIRRDHILEDAFNQLSVLSEDDLRGLIRISFVNEFGVEEAG 715

Query: 710 IDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAK 769
           IDGGGIFKDFMENITRAAFDVQYGLFKET+DHLLYPNPGSGMIHEQHLQFFHFLG +L K
Sbjct: 716 IDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTVLGK 775

Query: 770 AMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVI 829
           AMFEGILVDIPFATFFLSKLKQK+NYLNDLPSLDPELYRHLIFLKH+E D+SELELYFVI
Sbjct: 776 AMFEGILVDIPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHFEGDLSELELYFVI 835

Query: 830 LNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQK 889
           +NNEYGEQTEEELLPGGKNIRVTNENVITFIHL++NHRLNFQIRQQS+HFLRGFQQLIQ+
Sbjct: 836 VNNEYGEQTEEELLPGGKNIRVTNENVITFIHLIANHRLNFQIRQQSTHFLRGFQQLIQR 895

Query: 890 DWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQK 949
           DWI+MF+EHELQLLISGSLD LD DDLR NTNY GGYHSEHYVIE FWEVLKSF+LENQ 
Sbjct: 896 DWIEMFDEHELQLLISGSLDGLDVDDLRSNTNYAGGYHSEHYVIETFWEVLKSFTLENQM 955

Query: 950 KFLK 953
           KFLK
Sbjct: 956 KFLK 959

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359477095|ref|XP_003631937.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224108802|ref|XP_002314972.1| predicted protein [Populus trichocarpa] gi|222864012|gb|EEF01143.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255556492|ref|XP_002519280.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223541595|gb|EEF43144.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356555969|ref|XP_003546300.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like [Glycine max] Back     alignment and taxonomy information
>gi|297830342|ref|XP_002883053.1| hypothetical protein ARALYDRAFT_479191 [Arabidopsis lyrata subsp. lyrata] gi|297328893|gb|EFH59312.1| hypothetical protein ARALYDRAFT_479191 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356521719|ref|XP_003529499.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|79405297|ref|NP_188346.2| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] gi|334185408|ref|NP_001189915.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] gi|75247591|sp|Q8RWB8.1|UPL6_ARATH RecName: Full=E3 ubiquitin-protein ligase UPL6; Short=Ubiquitin-protein ligase 6 gi|20260606|gb|AAM13201.1| unknown protein [Arabidopsis thaliana] gi|37202000|gb|AAQ89615.1| At3g17205 [Arabidopsis thaliana] gi|332642397|gb|AEE75918.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] gi|332642399|gb|AEE75920.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356564980|ref|XP_003550723.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|186510163|ref|NP_001118648.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] gi|332642398|gb|AEE75919.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query953
TAIR|locus:20879391029 UPL6 "AT3G17205" [Arabidopsis 0.994 0.921 0.679 0.0
UNIPROTKB|Q5W7241030 OSJNBa0017J22.6 "Os05g0159000 0.995 0.921 0.574 1.3e-292
UNIPROTKB|F1N7031085 UBE3C "Uncharacterized protein 0.350 0.307 0.420 7e-80
UNIPROTKB|E1BZA81086 UBE3C "Uncharacterized protein 0.350 0.307 0.417 1.8e-77
UNIPROTKB|F1NZJ61084 UBE3C "Uncharacterized protein 0.350 0.308 0.417 2.2e-77
RGD|15599861083 Ube3c "ubiquitin protein ligas 0.350 0.308 0.411 2.6e-77
UNIPROTKB|Q153861083 UBE3C "Ubiquitin-protein ligas 0.350 0.308 0.411 3.7e-76
UNIPROTKB|F1PB351088 UBE3C "Uncharacterized protein 0.350 0.306 0.411 8.7e-76
MGI|MGI:21409981083 Ube3c "ubiquitin protein ligas 0.350 0.308 0.414 1.3e-75
ZFIN|ZDB-GENE-060526-2311069 ube3b "ubiquitin protein ligas 0.522 0.465 0.330 4e-74
TAIR|locus:2087939 UPL6 "AT3G17205" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3394 (1199.8 bits), Expect = 0., P = 0.
 Identities = 652/959 (67%), Positives = 754/959 (78%)

Query:     1 MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTXXXXXXXXXXXXQNHAAIKIQKCFRGKK 60
             MFFSGDP+TRKRVDLGGRS+KERD +KLLEQT            QN AA+KIQK FRG++
Sbjct:     1 MFFSGDPSTRKRVDLGGRSTKERDARKLLEQTRMERNRRLLQKQQNSAALKIQKFFRGRR 60

Query:    61 AMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAXXXXXXXXXNARNVSDISVLVETCRL 120
             +M IE SKVR  F  TYG + QNV+R CF P S+          A+N  D  +LVETCRL
Sbjct:    61 SMAIERSKVRHDFCETYGNNCQNVDRHCFEPGSSFLRQFLFFFKAQNSGDFVILVETCRL 120

Query:   121 MKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEES 180
             ++ FV  SGD+V LF+G+DYSS+  LVDFRVKK AF CI+A+HQNR  L+DQL VTPEE+
Sbjct:   121 LQSFVDSSGDIVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLVTPEEA 180

Query:   181 NTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISS 240
             +    +L+EAV  L+D +LPW CK+VSYL +R VF L+RE++ T KES    +  G I S
Sbjct:   181 SISTAILMEAVSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAKESPRGKTMTGNILS 240

Query:   241 LERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIH 300
             LERVL LI+PHIG++PC C  +DPRWSF S ILTIP +W LFP +K VFA    SQHYIH
Sbjct:   241 LERVLILIVPHIGREPCCCTVVDPRWSFSSMILTIPLIWKLFPNLKVVFANPSLSQHYIH 300

Query:   301 QMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLL 360
             QMA C+Q    VLP E S E PGYACLLGN L+TA V LSQP+CS +M +D+A + TF L
Sbjct:   301 QMASCIQKDTCVLPMETSPEFPGYACLLGNTLDTANVVLSQPECSLDMAIDIALVATFFL 360

Query:   361 KALPPIKSSRESSMV--SDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSG 418
             + LPP+KSS   S    SD+D    D+V   V+N+ LE+QIT+AIDSRFLLQLTNVLF  
Sbjct:   361 ETLPPVKSSEGESRQGSSDEDDMLIDDVPGLVLNKALEQQITNAIDSRFLLQLTNVLFRQ 420

Query:   419 FHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRC 478
               L    +DE   DKE  A+G A +FL+ AFNTLPLE IMT+LAYRTELV +LW+YMKRC
Sbjct:   421 VSLGMQSYDE---DKEALAIGTASSFLYAAFNTLPLERIMTILAYRTELVAVLWNYMKRC 477

Query:   479 HEIRKWPFLP----YLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRH 534
             HE +KW  +P    YL GDAPGWLLPL VFCPVYKHML IVDNEEFYE+EKPLSL+DIR 
Sbjct:   478 HENQKWSSMPKLLAYLPGDAPGWLLPLVVFCPVYKHMLMIVDNEEFYEREKPLSLQDIRL 537

Query:   535 LIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDW 594
             LI+IL++ALW LLW+NP + PN GKSVS+    +K  P E IQ+R+  V SE+LSQLQDW
Sbjct:   538 LIIILKQALWQLLWVNPLTQPNTGKSVSND--LSKKNPIELIQNRMGIVVSELLSQLQDW 595

Query:   595 NNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVR 654
             NNR++F   SDF AD VN++FISQA ++GTRAN IL QAPFL+PFTSR KIF +QLA+ R
Sbjct:   596 NNRKQFTSSSDFQADSVNEYFISQAIMEGTRANYILMQAPFLIPFTSRVKIFTTQLATAR 655

Query:   655 QRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGG 714
             Q HGS G+F R+RFRIRRDHILEDAY+QMS +SE+DLR +IRVTFVNELGVEEAGIDGGG
Sbjct:   656 QSHGSQGIFARNRFRIRRDHILEDAYNQMSALSEDDLRSSIRVTFVNELGVEEAGIDGGG 715

Query:   715 IFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEG 774
             IFKDFME ITRAAFDVQYGLFKET+DH+LYPNPGSGMIHEQHLQFFHFLG LLAKAMFEG
Sbjct:   716 IFKDFMEKITRAAFDVQYGLFKETADHMLYPNPGSGMIHEQHLQFFHFLGSLLAKAMFEG 775

Query:   775 ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEY 834
             ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLK Y+ DIS+LELYFVILNNEY
Sbjct:   776 ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKRYKGDISDLELYFVILNNEY 835

Query:   835 GEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDM 894
             GE+TEEELLPGG+++RVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLI K+WIDM
Sbjct:   836 GERTEEELLPGGQDMRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIPKEWIDM 895

Query:   895 FNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK 953
             FNEHE                 R NTNY GGYH+ HYVI+MFWEV+KSFS ENQKKFLK
Sbjct:   896 FNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLK 954
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IBA
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006464 "cellular protein modification process" evidence=IEA;ISS
GO:0016881 "acid-amino acid ligase activity" evidence=IEA
GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA
GO:0000151 "ubiquitin ligase complex" evidence=ISS
GO:0016567 "protein ubiquitination" evidence=ISS
UNIPROTKB|Q5W724 OSJNBa0017J22.6 "Os05g0159000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|F1N703 UBE3C "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZA8 UBE3C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZJ6 UBE3C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1559986 Ube3c "ubiquitin protein ligase E3C" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q15386 UBE3C "Ubiquitin-protein ligase E3C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PB35 UBE3C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2140998 Ube3c "ubiquitin protein ligase E3C" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060526-231 ube3b "ubiquitin protein ligase E3B" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RWB8UPL6_ARATH6, ., 3, ., 2, ., -0.70800.99470.9212yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query953
cd00078352 cd00078, HECTc, HECT domain; C-terminal catalytic 1e-112
smart00119328 smart00119, HECTc, Domain Homologous to E6-AP Carb 2e-82
COG5021872 COG5021, HUL4, Ubiquitin-protein ligase [Posttrans 2e-71
pfam00632298 pfam00632, HECT, HECT-domain (ubiquitin-transferas 3e-67
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information 
 Score =  348 bits (896), Expect = e-112
 Identities = 130/290 (44%), Positives = 180/290 (62%), Gaps = 10/290 (3%)

Query: 667 RFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRA 726
           +  +RRD ILEDA  Q+S +S  DL+  + V FV E      GID GG+ ++F   +++ 
Sbjct: 2   KITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGE-----EGIDAGGVTREFFTLVSKE 56

Query: 727 AFDVQYGLFKETSD--HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATF 784
            F+  YGLF+ T D   LLYPNP S    E HL+ F FLG LL KA++EG L+D+PF+  
Sbjct: 57  LFNPSYGLFRYTPDDSGLLYPNPSSFA-DEDHLKLFRFLGRLLGKALYEGRLLDLPFSRA 115

Query: 785 FLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVI-LNNEYGEQTEEELL 843
           F  KL  K   L DL  LDPELY+ L  L   + D  +LEL F I L++ +G     EL 
Sbjct: 116 FYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGDEDDLELTFTIELDSSFGGAVTVELK 175

Query: 844 PGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLL 903
           PGG++I VTNEN   ++ L  ++RLN  I +Q   F  GF ++I ++ + +F   EL+LL
Sbjct: 176 PGGRDIPVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELL 235

Query: 904 ISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK 953
           I GS D +D +DL++NT Y GGY S+   I+ FWEVL+SF+ E +KKFL+
Sbjct: 236 ICGSED-IDLEDLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQ 284

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 953
KOG44271096 consensus E3 ubiquitin protein ligase [Posttransla 100.0
KOG09421001 consensus E3 ubiquitin protein ligase [Posttransla 100.0
KOG0941850 consensus E3 ubiquitin protein ligase [Posttransla 100.0
COG5021872 HUL4 Ubiquitin-protein ligase [Posttranslational m 100.0
cd00078352 HECTc HECT domain; C-terminal catalytic domain of 100.0
KOG0939720 consensus E3 ubiquitin-protein ligase/Putative ups 100.0
smart00119336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 100.0
KOG0170621 consensus E3 ubiquitin protein ligase [Posttransla 100.0
PF00632317 HECT: HECT-domain (ubiquitin-transferase); InterPr 100.0
KOG0940358 consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos 100.0
KOG09433015 consensus Predicted ubiquitin-protein ligase/hyper 99.92
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 97.65
smart0001526 IQ Short calmodulin-binding motif containing conse 97.07
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-155  Score=1302.76  Aligned_cols=880  Identities=29%  Similarity=0.485  Sum_probs=735.6

Q ss_pred             CCCCcccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc---ccCCchhh
Q 002205           18 RSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNR---QCFGPQSA   94 (953)
Q Consensus        18 ~s~~e~~r~~lL~~~r~eRe~R~~~rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R~efd~~~~~~~~~~~~---~~~~~~~~   94 (953)
                      ++..+++|++||+|+++|||+|+.+|||++||++||++||||++||+++.+|+++||.++..+....++   ....|.-.
T Consensus         2 ~~~~q~sra~fl~k~~qeREer~~qrrr~~aa~~iq~~lrsyl~Rkk~~~~I~~e~d~~f~~d~~d~~~~~erv~~~~l~   81 (1096)
T KOG4427|consen    2 FSSGQISRAAFLAKVSQEREERSYQRRREAAALFIQRVLRSYLVRKKAQIEIQEEFDNLFSCDSVDLTKVLERVARPFLP   81 (1096)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHhhhHHH
Confidence            344457899999999999999999999999999999999999999999999999999999987743222   22233456


Q ss_pred             hhhhheEEEeccccccHHHHHHHHHHHHHHhhhcCCccccccccccccchhh-HHHHHHHHHHHHHHHHHhhhhhhcccc
Q 002205           95 FFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRAL-VDFRVKKFAFACIQAVHQNRKELKDQL  173 (953)
Q Consensus        95 ~lr~llFf~~~~~~~D~~rL~~lC~~ll~s~~~~~~~~~~~~~~~~~~~~~~-~~~qiKkll~lC~~~L~~~~~~~~~~~  173 (953)
                      ++|.+++.++.++ .|.+||+++||+|+.+|+++++.+.+||++++++|+.. |+.|||++++.|++.|.+++++...+.
T Consensus        82 var~ll~q~r~ie-~~~e~~~~iCr~il~smds~n~~~~sfvsl~l~ke~sk~w~~qik~ils~c~~lL~eln~Er~ad~  160 (1096)
T KOG4427|consen   82 VARSLLVQHRKIE-AREERLEQICRKILLSMDSENDQKYSFVSLALGKEDSKTWICQIKRILSLCSFLLTELNPERIADS  160 (1096)
T ss_pred             HHHHHHHHHHHHH-hHHHHHHHHHHHHHHhhcCCCCcceeeeeehhcccchHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            8899999888875 44899999999999999999999999999999999876 799999999999999999777633222


Q ss_pred             cCCCCCCCCchHHHHHHHHHhhcCCchh------------------hHHHHHHHHhcchHHHHHHHHHhcCCCccccccc
Q 002205          174 FVTPEESNTPPTLLLEAVVFLIDSRLPW------------------TCKVVSYLLERNVFTLLRELIVTGKESMEIHSSY  235 (953)
Q Consensus       174 ~~~~~~~~~~~~~~L~~l~~lt~~~~~W------------------~~~i~~yL~q~g~y~~Lr~ll~~~~~~~~~~~~~  235 (953)
                              ....++|+++++|||++. |                  |++||||++|+|||+.+|.+|.++..+.++....
T Consensus       161 --------~~~alll~~livfTdpks-Wkilrn~n~e~lqtamn~ic~~i~gh~~q~~~Ys~mr~~l~~~t~~~~~~l~~  231 (1096)
T KOG4427|consen  161 --------IVNALLLHILIVFTDPKS-WKILRNENFEDLQTAMNIICQNIMGHLCQHGFYSAMRRYLKRGTKRTDPRLVI  231 (1096)
T ss_pred             --------HHHHHHHHeeeEEeCCcc-eeehhccchhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCCCcceee
Confidence                    255899999999999999 9                  4789999999999999999999999877763333


Q ss_pred             CCcchHHHHHHhhcccccCCCCccCCCCCcc------chhhhhcccchhhhhhhh----HHHHHhhcCCchhhHHHHHHH
Q 002205          236 GRISSLERVLTLIIPHIGQKPCICPNIDPRW------SFFSQILTIPFLWHLFPY----IKEVFATGRTSQHYIHQMALC  305 (953)
Q Consensus       236 ~~~~~l~~ll~l~~~~~~~~~~~~~~~~~~~------~f~~~IlsiP~l~~~~p~----~~~~~~~~~L~~~~~~~~~~~  305 (953)
                      .   ++.+.+.+         +.+|...+++      .|.++|||||+|..|+|.    ....+.++.+..+.++    +
T Consensus       232 ~---Tl~a~~sl---------~~rpvk~~nfsd~l~~~fv~~IltvPaLv~hL~~~~~q~le~~ss~~l~~K~l~----~  295 (1096)
T KOG4427|consen  232 T---TLAATFSL---------RLRPVKQPNFSDNLVEEFVSLILTVPALVCHLPSALPQALEHLSSLMLLDKILN----I  295 (1096)
T ss_pred             e---ehhhhhhh---------ccccccCCchHHHHHHHHHHHHhchhHHHHhcchhhHHHHHHHHHHHHHHHHHH----H
Confidence            2   22222222         2345555554      599999999999888774    4777777888888876    5


Q ss_pred             HhhhcccCCccccCCcchHHHHHHHHHHHhhhhccCCCCcchhhhhHHHHHHHHHhhCCCcccc--CccCC---------
Q 002205          306 VQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSS--RESSM---------  374 (953)
Q Consensus       306 l~~~~~~~~~~~s~~~p~~~~lL~Nl~~l~~~~l~~~~~~~~~~~~~v~v~~~lL~~l~~~~~~--~~~~~---------  374 (953)
                      +.+......-+.+.++|+.+|+|||++++++  .++.+...+..-+++..+++-|.+|-.++.+  ++++.         
T Consensus       296 l~d~~~~ee~~tsme~~~~l~llgNiv~la~--is~~~~e~~~~~~f~~~~~~sl~~~~e~tv~~~tk~~l~~wH~vlg~  373 (1096)
T KOG4427|consen  296 LRDMENSEEQSTSMEGPSVLWLLGNIVHLAT--ISETDLEDELESNFYVLYTHSLVTLAENTVSQVTKVGLTDWHPVLGW  373 (1096)
T ss_pred             HHhhHhHHHhhcCCcccHhHHHHhhhheeee--cCcccccccccccchhhhHHHHHHHHHHHhhcccccceeeeehhhcc
Confidence            5544444333557888999999999999997  3333333333334778888888888554433  23321         


Q ss_pred             CCCCCccCCCCCccchhhHhHHHHHHHHhhHHHHHHHHHHHhhhccc--------------------------------C
Q 002205          375 VSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHL--------------------------------L  422 (953)
Q Consensus       375 ~~~ddd~~~~~~~~~~~~~~l~~ql~~~~~~~~l~~lv~~l~~~v~~--------------------------------~  422 (953)
                      .+...|.+.++.|.     .++.|+.-+|+.    ++++.+|.++..                                +
T Consensus       374 ~s~~~ek~~n~~i~-----~v~~q~~mlw~~----~likll~~dile~~~las~~~~~~sk~s~~~~l~Is~l~sr~lrk  444 (1096)
T KOG4427|consen  374 TSNETEKGNNVKIS-----LVEKQLPMLWQW----RLIKLLFGDILEIRVLASKDASTSSKKSPETLLDISRLLSRALRK  444 (1096)
T ss_pred             ccCCCCCccchhHH-----HHHHHHHHHhhh----hHHHHHhhhHHHhhhhccccccccCCCCCcchhHHHHHHHHHHHH
Confidence            44555556666665     799999999997    444444433211                                0


Q ss_pred             CC---C-------------CCCCCCchhhhHHHHHHHHHHHhhhhchh--hHHHHHhhhhhhhHHHHHHHHHhhcccCCC
Q 002205          423 RG---P-------------HDEGPGDKEVAAVGAACAFLHVAFNTLPL--ECIMTVLAYRTELVQLLWHYMKRCHEIRKW  484 (953)
Q Consensus       423 ~~---~-------------~~~~~~~~~~~~v~~~c~~~~~~l~~lp~--~~iL~~Laf~~~ll~~LW~~i~~~~~~~~~  484 (953)
                      ++   .             ++--.+++++..++.+|..|+++++|+.+  ..++++|+|.+.+++.+|.+|+..+++.+-
T Consensus       445 ~~~~~~~l~~v~ss~~~~~~~k~~s~~~v~lv~~iC~~y~aslnTl~~mr~~iltgl~~~dnll~~lW~~i~e~G~~~G~  524 (1096)
T KOG4427|consen  445 SCVMGPVLGPVPSSNMLSFCPKWNSSAEVLLVENICTAYDASLNTLWQMRLPILTGLCYLDNLLVNLWVNILELGPSPGP  524 (1096)
T ss_pred             hcccCCccCCCccchhhhccccccCcccceehhhhhhHHHhhhhhHHHhhhHHhhcchhhhhhHHHHHHHHHHhCCCCCC
Confidence            00   0             01113678899999999999999998875  579999999999999999999998887662


Q ss_pred             C--CC----------C---CCCCC---CCCcchhhhhhHHHHhHHhhhccchhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 002205          485 P--FL----------P---YLSGD---APGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHL  546 (953)
Q Consensus       485 ~--sl----------~---~~~~~---~~~~ll~l~lFc~l~s~~L~ildD~Ef~~~~~pf~l~el~~l~~~Lk~~~~~l  546 (953)
                      .  +-          +   .+.++   +....++|.|||+||.|+++|+||+|||++|.||+++|+.+++.+||.++|++
T Consensus       525 ~~gs~~~~~~~k~~~ev~~~l~s~~~~sk~~tamL~LFcdc~ahlitILDd~e~yekq~pF~lee~~~i~s~lN~~vyk~  604 (1096)
T KOG4427|consen  525 QPGSGQVNESTKDVLEVETLLGSPTGISKPVTAMLMLFCDCYAHLITILDDIEFYEKQVPFKLEELVRIASFLNTFVYKG  604 (1096)
T ss_pred             CCCccccchhHHHHHhHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHHHH
Confidence            1  10          1   01111   12366789999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCCCCCccCCCCCCCCCCcHHHHhhhhhHHHHHHHHHHhHhhcCCccCCCCCCcCCCCc-hhhhhhhhccccc
Q 002205          547 LWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVN-DFFISQATIDGTR  625 (953)
Q Consensus       547 lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~L~~~~~r~~~~p~~~f~~~~~~-~~~~~~~~~~~~~  625 (953)
                      ||.+....+             +     ....-++.+++++|..||+|||||+|+|+++|+++++. ..|....+....+
T Consensus       605 i~~g~v~ea-------------k-----~~t~~lF~S~h~~l~vLYeRDcRr~Fta~d~WL~pevkPs~f~~e~ek~~~~  666 (1096)
T KOG4427|consen  605 IWDGTVPEA-------------K-----QLTTGLFDSAHRLLHVLYERDCRRPFTASDHWLIPEVKPSAFAAELEKVLPT  666 (1096)
T ss_pred             HHcccchhh-------------h-----hHHHHHHHHHHHHHHHHHHhccCCCCCcchhhcCCCCChhHHHHHHHhhccc
Confidence            996433211             1     11122789999999999999999999999999998875 3444444445566


Q ss_pred             hhHhhhcCCcccchhhHHHHHHHHHHHHHhhcCC----CCCcce-eeEEecCCcHHHHHHHHHccCChhhccCceEEEEe
Q 002205          626 ANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGS----HGVFTR-SRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFV  700 (953)
Q Consensus       626 ~~~il~~~Pfl~pf~~rv~~f~~~~~~~~~~~~~----~~~~~~-~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~  700 (953)
                      +..++..+|+++|+++||.+||+++..++...+.    .....+ ..|+|||++|+||+|+||++.+...||+.++|+|+
T Consensus       667 a~lll~~mpHviP~edRv~lFR~fVqkdKa~~~lv~ts~a~p~~~t~IvvrR~rivEDGf~qL~~l~~~alKs~IrVkFV  746 (1096)
T KOG4427|consen  667 ADLLLTKMPHVIPHEDRVLLFREFVQKDKASRGLVETSDASPARSTEIVVRRGRIVEDGFQQLNSLGSPALKSVIRVKFV  746 (1096)
T ss_pred             ceeEeccCCcccChHHHHHHHHHHHhhhHHhhcccccccCCccceeEEEEEcccchhhHHHHHHhccchhhhceEEEEEe
Confidence            7788999999999999999999999888754331    122223 58999999999999999999998899999999999


Q ss_pred             eccCcccccccCCCccHHHHHHHHHHhhccccCCccccC-CccceeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCcccc
Q 002205          701 NELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETS-DHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDI  779 (953)
Q Consensus       701 ~e~G~~E~GiD~GG~~rEff~~l~~e~f~p~~glF~~~~-~~~l~pnp~s~~~~~~~l~~f~flG~llG~Ai~~~~~l~l  779 (953)
                      ||+|++|||||.||++|||++++.|..|||+++||.+|+ |+.+||+|.++ ..++|+++|+|+|||+|||+|+|+++|+
T Consensus       747 NeqGl~EAGiDqdGvfKEFLeeiiKkvFdp~lnLFstTs~d~~LyPSPts~-~~en~lqlfeFvGrmlGKAvYEGIvvDv  825 (1096)
T KOG4427|consen  747 NEQGLDEAGIDQDGVFKEFLEEIIKKVFDPELNLFSTTSTDRRLYPSPTSY-HHENHLQLFEFVGRMLGKAVYEGIVVDV  825 (1096)
T ss_pred             cccCCcccccCccchHHHHHHHHHHHHhcccccccccCCCCceecCCchhh-hhhchhHHHHHHHHHHHHHHhcceEEec
Confidence            999999999999999999999999999999999999998 89999999997 7899999999999999999999999999


Q ss_pred             cCcHHHHHhhcCCCC--CCCCccccCHHHHHHHHhhhhccCCccccceeEEEEecccCcceeeecCCCCCccccChhhHH
Q 002205          780 PFATFFLSKLKQKYN--YLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVI  857 (953)
Q Consensus       780 ~f~~~f~k~Llg~~~--~l~DL~~~Dp~l~~sL~~l~~~~~dv~~l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~  857 (953)
                      ||+++|+.+++|...  .+|+|+++|||+||||.++|+|+||+.||+|||++++|..|+..++||+|||+.|+||++||.
T Consensus       826 ~fa~vflsqlLG~~~~s~~DELs~LDpElYrnLtfvKhYdgd~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi  905 (1096)
T KOG4427|consen  826 PFASVFLSQLLGRHSLSFIDELSSLDPELYRNLTFVKHYDGDLKDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKI  905 (1096)
T ss_pred             ccHHHHHHHHhcccchhhhhhccccCHHHHhhhhHHHhhcccHhhheeeeEechhhccceeEEEeccCCcceeccccchH
Confidence            999999999999886  799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhcCCCHHHHHHHHcCCCCCccHHHHhhcceeCCCCCCCCHHHHHHH
Q 002205          858 TFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFW  937 (953)
Q Consensus       858 eYv~l~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~li~G~~~~id~~dL~~~t~y~gGy~~~~~~I~~FW  937 (953)
                      +|||+|++|++|++|++|++||.+||.++|.|+||++|+|.|||+||+|+..+||++|||+||+|.|||+.+|++|+|||
T Consensus       906 ~YIH~MA~~rmnrqi~eqt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlW  985 (1096)
T KOG4427|consen  906 QYIHAMAHFRMNRQIVEQTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLW  985 (1096)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999989999999999999999999999999999


Q ss_pred             HHHh-cCCHHHHhhhcC
Q 002205          938 EVLK-SFSLENQKKFLK  953 (953)
Q Consensus       938 evl~-~~s~eer~~fLk  953 (953)
                      +|++ +|++|||+.|||
T Consensus       986 dIl~~dFt~eERklfLK 1002 (1096)
T KOG4427|consen  986 DILAGDFTPEERKLFLK 1002 (1096)
T ss_pred             HHHhccCChHHHHHHHH
Confidence            9997 599999999997

>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription] Back     alignment and domain information
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query953
2xbb_A386 Nedd4 Hect:ub Complex Length = 386 2e-31
3h1d_A405 Structure Of The Huwe1 Hect Domain Length = 405 2e-31
3jvz_C385 E2~ubiquitin-Hect Length = 385 4e-31
3jw0_C385 E2~ubiquitin-Hect Length = 385 4e-31
3g1n_A388 Catalytic Domain Of The Human E3 Ubiquitin-Protein 4e-31
2oni_A392 Catalytic Domain Of The Human Nedd4-Like E3 Ligase 2e-30
3tug_A398 Crystal Structure Of The Hect Domain Of Itch E3 Ubi 1e-27
1nd7_A374 Conformational Flexibility Underlies Ubiquitin Liga 3e-27
1c4z_A358 Structure Of E6ap: Insights Into Ubiquitination Pat 2e-25
3olm_A429 Structure And Function Of A Ubiquitin Binding Site 2e-25
1zvd_A380 Regulation Of Smurf2 Ubiquitin Ligase Activity By A 6e-24
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 Back     alignment and structure 
Iteration: 1

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 153/288 (53%), Gaps = 11/288 (3%)
Query: 669 RIRRDHILEDAYSQMSTMSEED-LRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAA 727
           ++RR  +LED+Y ++  +   D L+  + + F  E      G+D GG+ +++   I++  
Sbjct: 32  KLRRATVLEDSYRRIMGVKRADFLKARLWIEFDGE-----KGLDYGGVAREWFFLISKEM 86
Query: 728 FDVQYGLFK--ETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFF 785
           F+  YGLF+   T ++ L  NP SG+ +E HL +F F+G +   A++ G L+D  F   F
Sbjct: 87  FNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPF 146
Query: 786 LSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPG 845
              +  K   L+D+ S+D E Y  L ++   E D +EL+L F+I    +G+  + EL  G
Sbjct: 147 YKMMLHKPITLHDMESVDSEYYNSLRWI--LENDPTELDLRFIIDEELFGQTHQHELKNG 204
Query: 846 GKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHEXXXXXX 905
           G  I VTN+N   +I+LV   R   +I++Q + F  GF +LI +D I +F+E+E      
Sbjct: 205 GSEIVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENE-LELLM 263
Query: 906 XXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK 953
                      R++T Y  GY + H VI+ FW+ +     E + + L+
Sbjct: 264 CGLGDVDVNDWREHTKYKNGYSANHQVIQWFWKAVLMMDSEKRIRLLQ 311
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 Back     alignment and structure
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 Back     alignment and structure
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392 Back     alignment and structure
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398 Back     alignment and structure
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374 Back     alignment and structure
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358 Back     alignment and structure
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 Back     alignment and structure
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query953
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 1e-129
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 1e-126
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 1e-121
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 1e-117
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 1e-117
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 1e-110
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 Back     alignment and structure
 Score =  395 bits (1017), Expect = e-129
 Identities = 104/328 (31%), Positives = 165/328 (50%), Gaps = 15/328 (4%)

Query: 628 EILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMS 687
           E+L Q P +  F  + K F+ +L  + +      +       +RRDH+ ED+Y ++   S
Sbjct: 15  EVLFQGPHM-DFDVKRKYFRQELERLDEGLRKEDM----AVHVRRDHVFEDSYRELHRKS 69

Query: 688 EEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD--HLLYP 745
            E+++  + + F  E      G D GG+ +++   I+R  F+  Y LF+ +         
Sbjct: 70  PEEMKNRLYIVFEGE-----EGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTI 124

Query: 746 NPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPE 805
           NP S   +  HL +F F+G ++AKA+++  L++  F   F   +  K     D+ S D  
Sbjct: 125 NPSSH-ANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYH 183

Query: 806 LYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSN 865
            Y+ L++L   +      +L F     E+G     +L P G NI VT EN   ++HLV  
Sbjct: 184 FYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQ 243

Query: 866 HRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGG 925
            R+   IR+Q + FL GF ++I K  I +F E EL+LLISG    +D DDL+ NT Y   
Sbjct: 244 MRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPT-IDIDDLKSNTEY-HK 301

Query: 926 YHSEHYVIEMFWEVLKSFSLENQKKFLK 953
           Y S    I+ FW  L+SF   ++ KFL+
Sbjct: 302 YQSNSIQIQWFWRALRSFDQADRAKFLQ 329
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query953
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 100.0
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 100.0
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 100.0
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 100.0
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 100.0
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 100.0
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 99.0
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 96.87
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 96.39
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 95.85
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 95.78
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 95.37
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 95.2
3gn4_A148 Myosin-VI; unconventional myosin, motility, lever 93.36
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 83.64
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 82.46
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 82.41
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 82.31
4dck_A168 Sodium channel protein type 5 subunit alpha; IQ-mo 82.18
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 80.49
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Back     alignment and structure
Probab=100.00  E-value=7.8e-70  Score=617.31  Aligned_cols=313  Identities=34%  Similarity=0.611  Sum_probs=283.3

Q ss_pred             hhHhhhcCCcccchhhHHHHHHHHHHHHHhhcCCCCCcceeeEEecCCcHHHHHHHHHccCChhhccCceEEEEeeccCc
Q 002205          626 ANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGV  705 (953)
Q Consensus       626 ~~~il~~~Pfl~pf~~rv~~f~~~~~~~~~~~~~~~~~~~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~  705 (953)
                      ..+.+.+-|+ +||+.|+++|+..+.+.+....    ....+++|||++|++||++++...++.+||++|+|+|.|    
T Consensus        13 ~~~~~~~~~~-~~f~~k~~~F~~~l~~~~~~~~----~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~g----   83 (405)
T 3h1d_A           13 GLEVLFQGPH-MDFDVKRKYFRQELERLDEGLR----KEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEG----   83 (405)
T ss_dssp             CCGGGGCSTT-SCHHHHHHHHHHHHHHHTTTCC----CCEEEEEECGGGHHHHHHHHHTTSCTTGGGSEEEEEETT----
T ss_pred             hhHHhhcCCC-cCHHHHHHHHHHHHHhhhcCCC----CCceEEEEeCchHHHHHHHHHHccCHHHhhcceEEEECC----
Confidence            3456777888 5999999999998876544221    234589999999999999999988889999999999998    


Q ss_pred             ccccccCCCccHHHHHHHHHHhhccccCCccccCC-c-cceeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCcccccCcH
Q 002205          706 EEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD-H-LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFAT  783 (953)
Q Consensus       706 ~E~GiD~GG~~rEff~~l~~e~f~p~~glF~~~~~-~-~l~pnp~s~~~~~~~l~~f~flG~llG~Ai~~~~~l~l~f~~  783 (953)
                       |+|+|+||++||||+++++|+|+|++|||..+++ + .++|||.+. ..++++++|+|+|+++|+|||+|+++|++||+
T Consensus        84 -E~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~-~~~~~l~~f~flGrliG~Al~~~~~ld~~F~~  161 (405)
T 3h1d_A           84 -EEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSH-ANPNHLSYFKFVGRIVAKAVYDNRLLECYFTR  161 (405)
T ss_dssp             -CCSCCCTTHHHHHHHHHHHHTTCGGGTSEEECSSCSSEEEECCC------CHHHHHHHHHHHHHHHHHHTCCCCCEECH
T ss_pred             -CCCcCCChhHHHHHHHHHHHHhCCcccceeeccCCceeEeeCCccc-cChhHHHHHHHHhHHHHHHHhCCCccCCCccH
Confidence             7899999999999999999999999999998754 3 356999875 46788999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCCCCccccCHHHHHHHHhhhhccCCccc--cceeEEEEecccCcceeeecCCCCCccccChhhHHHHHH
Q 002205          784 FFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISE--LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIH  861 (953)
Q Consensus       784 ~f~k~Llg~~~~l~DL~~~Dp~l~~sL~~l~~~~~dv~~--l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~eYv~  861 (953)
                      +|||+|+|.+++++||+++||++|+||++|++++  +++  ++++|+++.+.+|...++||+|||++|+||++||.+||+
T Consensus       162 ~f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~~--~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~  239 (405)
T 3h1d_A          162 SFYKHILGKSVRYTDMESEDYHFYQGLVYLLEND--VSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVH  239 (405)
T ss_dssp             HHHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHSC--GGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHhhHHHHHHHhhhhcCC--hhhhcceeEEEEEeecCCceeeEeecCCCCCCccchHhHHHHHH
Confidence            9999999999999999999999999999999764  444  578888887888988899999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhchhhhhcCCCHHHHHHHHcCCCCCccHHHHhhcceeCCCCCCCCHHHHHHHHHHh
Q 002205          862 LVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLK  941 (953)
Q Consensus       862 l~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~li~G~~~~id~~dL~~~t~y~gGy~~~~~~I~~FWevl~  941 (953)
                      ++++|+++++|+.|++||++||++|||.++|++|+|+||+.||||.+ +||++||++||.|. ||+++|++|+|||+|++
T Consensus       240 l~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~-~id~~dl~~~t~y~-gy~~~~~~i~~FW~v~~  317 (405)
T 3h1d_A          240 LVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLP-TIDIDDLKSNTEYH-KYQSNSIQIQWFWRALR  317 (405)
T ss_dssp             HHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCC-CCCHHHHHHTEEEE-SSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCCHHHHHHHhCCCC-CCCHHHHHhhCccc-CCCCCCchHhhHHHHHH
Confidence            99999999999999999999999999999999999999999999997 59999999999997 89999999999999999


Q ss_pred             cCCHHHHhhhcC
Q 002205          942 SFSLENQKKFLK  953 (953)
Q Consensus       942 ~~s~eer~~fLk  953 (953)
                      +||+|||++|||
T Consensus       318 ~~s~eer~~fL~  329 (405)
T 3h1d_A          318 SFDQADRAKFLQ  329 (405)
T ss_dssp             HSCHHHHHHHHH
T ss_pred             hCCHHHHHHHHH
Confidence            999999999985
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 953
d1nd7a_374 d.148.1.1 (A:) WW domain-containing protein 1, WWP 1e-72
d1c4za_350 d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) 1e-65
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  242 bits (618), Expect = 1e-72
 Identities = 89/310 (28%), Positives = 159/310 (51%), Gaps = 10/310 (3%)

Query: 646 FQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGV 705
           F+ +LA  R    S+ + +  +  + R  + ED++ Q+  +   DLR  + V F  E   
Sbjct: 4   FRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGE--- 60

Query: 706 EEAGIDGGGIFKDFMENITRAAFDVQYGLFKET--SDHLLYPNPGSGMIHEQHLQFFHFL 763
              G+D GG+ +++   ++    +  Y LF+    +++ L  NP S  I+  HL +F F+
Sbjct: 61  --EGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAS-TINPDHLSYFCFI 117

Query: 764 GILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISEL 823
           G  +A A+F G  +D  F+  F  ++  K   + DL S+D E Y  LI+++    +   L
Sbjct: 118 GRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGL 177

Query: 824 ELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGF 883
           E+YF +     G+ T  +L  GG NI VT EN   +I L++  R +  +++Q+  FL GF
Sbjct: 178 EMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGF 237

Query: 884 QQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSF 943
            +++   W+  F+E EL++++ G  + +D  D ++NT Y   Y      I  FW+ +K  
Sbjct: 238 NEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYR-HYTRNSKQIIWFWQFVKET 295

Query: 944 SLENQKKFLK 953
             E + + L+
Sbjct: 296 DNEVRMRLLQ 305
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query953
d1nd7a_374 WW domain-containing protein 1, WWP1 {Human (Homo 100.0
d1c4za_350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 100.0
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 87.68
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 85.07
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 80.83
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-61  Score=542.85  Aligned_cols=302  Identities=29%  Similarity=0.547  Sum_probs=279.1

Q ss_pred             cchhhHHHHHHHHHHHHHhhcCCCCCcceeeEEecCCcHHHHHHHHHccCChhhccCceEEEEeeccCcccccccCCCcc
Q 002205          637 VPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIF  716 (953)
Q Consensus       637 ~pf~~rv~~f~~~~~~~~~~~~~~~~~~~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~  716 (953)
                      ++|+.|...|+......       ......+|+|||++|++|+++++.+.++.+|+++|+|+|.|     |+|+|+|||+
T Consensus         2 ~~~~~~~~~f~~~~~~~-------~~~~~~~i~V~R~~l~~d~~~~l~~~~~~~l~~~l~V~F~g-----E~g~D~GG~~   69 (374)
T d1nd7a_           2 MGFRWKLAHFRYLCQSN-------ALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRG-----EEGLDYGGLA   69 (374)
T ss_dssp             CTHHHHHHHHHHHHHHT-------CCSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETT-----TCCCCCTHHH
T ss_pred             ccHHHHHHHHHHHHhhc-------CCCCceEEEEccccHHHHHHHHHHhcCHHHhCCCeEEEECC-----CCccCCCccH
Confidence            46888998998754321       11234589999999999999999999989999999999998     7899999999


Q ss_pred             HHHHHHHHHHhhccccCCccccCCc--cceeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCcccccCcHHHHHhhcCCCC
Q 002205          717 KDFMENITRAAFDVQYGLFKETSDH--LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYN  794 (953)
Q Consensus       717 rEff~~l~~e~f~p~~glF~~~~~~--~l~pnp~s~~~~~~~l~~f~flG~llG~Ai~~~~~l~l~f~~~f~k~Llg~~~  794 (953)
                      ||||+++++|+++|++|+|..++++  .++|||.+. ..++++++|+++|+++|+||++|.+++++||++|||+|+|+++
T Consensus        70 rEff~~l~~el~~p~~~lf~~~~~~~~~~~~~p~~~-~~~~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Llg~~~  148 (374)
T d1nd7a_          70 REWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAST-INPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKL  148 (374)
T ss_dssp             HHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHcCCccCCeeecCCCCcccccCCccc-cChhHHHHHHHhHHHHHHHHHcCcccCCCccHHHHHHhcCCCC
Confidence            9999999999999999999977654  566999875 4567889999999999999999999999999999999999999


Q ss_pred             CCCCccccCHHHHHHHHhhhhccCCccccceeEEEEecccCcceeeecCCCCCccccChhhHHHHHHHHHHHHHhhhHHH
Q 002205          795 YLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQ  874 (953)
Q Consensus       795 ~l~DL~~~Dp~l~~sL~~l~~~~~dv~~l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~  874 (953)
                      +++||+++||++|++|.++++++.+..+++++|+++.+..|+..++||+|||++++||.+|+.+||+++++|+++++++.
T Consensus       149 t~~DL~~iD~~~~~sl~~l~~~~~e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~VT~~N~~~yv~~~~~~~l~~~~~~  228 (374)
T d1nd7a_         149 TIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQE  228 (374)
T ss_dssp             CHHHHHTTCHHHHHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHH
T ss_pred             CHHHHHHhCHHHHHhHHHHHhccccccccceeEEEEeecCCCcceeecCCCCCcccchHHHHHHHHHHHHHHHHhccHHH
Confidence            99999999999999999999877666778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhchhhhhcCCCHHHHHHHHcCCCCCccHHHHhhcceeCCCCCCCCHHHHHHHHHHhcCCHHHHhhhcC
Q 002205          875 QSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK  953 (953)
Q Consensus       875 q~~aF~~Gf~~vi~~~~L~~F~~~EL~~li~G~~~~id~~dL~~~t~y~gGy~~~~~~I~~FWevl~~~s~eer~~fLk  953 (953)
                      |++||++||++|+|.+++++|+|+||+.++||.++ +|+++|+++|.|. ||+++|++|+|||+|+++||+|||++|||
T Consensus       229 ~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~-id~~~l~~~~~y~-gy~~~s~~i~~fw~vl~~~t~ee~~~fL~  305 (374)
T d1nd7a_         229 QTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYR-HYTRNSKQIIWFWQFVKETDNEVRMRLLQ  305 (374)
T ss_dssp             HHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCC-CCHHHHHHTEEEE-SCCTTSHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHhHHHhCCHHHHhhCCHHHHHHhhCCCCC-CCHHHHhhheeec-cCCCCCHHHHHHHHHHHhcCHHHHHHhhe
Confidence            99999999999999999999999999999999875 9999999999997 89999999999999999999999999985
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure