Citrus Sinensis ID: 002209
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 953 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZF3 | 960 | Probable glutamyl endopep | yes | no | 0.940 | 0.933 | 0.789 | 0.0 | |
| Q10MJ1 | 938 | Probable glutamyl endopep | yes | no | 0.903 | 0.917 | 0.787 | 0.0 | |
| P34422 | 740 | Dipeptidyl peptidase fami | yes | no | 0.215 | 0.277 | 0.257 | 2e-09 | |
| P39839 | 657 | Uncharacterized peptidase | yes | no | 0.133 | 0.193 | 0.287 | 8e-06 | |
| P13676 | 732 | Acylamino-acid-releasing | yes | no | 0.162 | 0.211 | 0.242 | 1e-05 | |
| Q8R146 | 732 | Acylamino-acid-releasing | yes | no | 0.165 | 0.215 | 0.229 | 3e-05 | |
| P19205 | 732 | Acylamino-acid-releasing | yes | no | 0.153 | 0.199 | 0.248 | 0.0001 | |
| P14740 | 767 | Dipeptidyl peptidase 4 OS | no | no | 0.235 | 0.292 | 0.251 | 0.0001 | |
| P13798 | 732 | Acylamino-acid-releasing | yes | no | 0.153 | 0.199 | 0.265 | 0.0003 | |
| P28843 | 760 | Dipeptidyl peptidase 4 OS | no | no | 0.235 | 0.294 | 0.255 | 0.0004 |
| >sp|Q8VZF3|CGEP_ARATH Probable glutamyl endopeptidase, chloroplastic OS=Arabidopsis thaliana GN=GEP PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1473 bits (3813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 718/910 (78%), Positives = 787/910 (86%), Gaps = 14/910 (1%)
Query: 49 TTAM---TASRLHHLVPIHSVSSKNDG--TNGSLSSSNAVATEDEDNLEGRYRLPPPEIR 103
TT M +ASRL L S +++ G +NGSLS+S +DE + YRLPPPEIR
Sbjct: 59 TTVMASRSASRLRSLASACSGGAEDGGGTSNGSLSASATATEDDELAIGTGYRLPPPEIR 118
Query: 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYT 163
+IVDAPP+PALSFSP RDKILFLKRRALPPL +LARPEEKLAG+RIDG CNTRSRMSFYT
Sbjct: 119 DIVDAPPVPALSFSPHRDKILFLKRRALPPLADLARPEEKLAGVRIDGYCNTRSRMSFYT 178
Query: 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223
G+GIHQL PDG L E EI G PDG K+NFVTWS DGKHLAFSIR+D E+ +SSK VWV
Sbjct: 179 GLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVD-ENGNSSKPVVWV 237
Query: 224 ADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQS 283
ADV+TG ARPLF S DI+LNAIF++FVW++NSTLLV TIP RG+PPKKPLVP GPK S
Sbjct: 238 ADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPSGPKTLS 297
Query: 284 NEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDE 343
NE + ++QVRTFQDLLKDEYD DLFDYYA++QLVL SLDGTVKE+G PAVYTSLDPS D
Sbjct: 298 NETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSLDPSTDH 357
Query: 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRS 403
KY+L+SS+HRPYSFIVPCGRFP++V VWTTDG FVR+LCDLPLAEDIPIA NSVRKGMRS
Sbjct: 358 KYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSVRKGMRS 417
Query: 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW 463
INWR+DKPSTL WAETQDGGDAK+EV+PRDI+Y Q AEP+ GE PE+LHKLDLRYGGISW
Sbjct: 418 INWRADKPSTL-WAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLRYGGISW 476
Query: 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523
CDD+LALVYESWYKTRRTRTWVISPGS DV+PRILFDRSSEDVYSDPGS M+RRT GTY
Sbjct: 477 CDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRRTDAGTY 536
Query: 524 VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583
VIAKIKKENDEGTY+LLNG+GATP+GN+PFLDLFDINTG+KERIWESDKEKY+ET VALM
Sbjct: 537 VIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFETVVALM 596
Query: 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIK 643
SDQ EGDL + +LKILTSKESKTENTQY +Q WPD+K QIT+FPHPYPQLASLQKE+I+
Sbjct: 597 SDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASLQKEMIR 656
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703
YQRKDGVQL+ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF IGST
Sbjct: 657 YQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFAGIGST 716
Query: 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAV 763
S LLWLAR FAIL GPT PIIGEGDEEANDR+VEQLVA AEAAVEEVVRRGVA SKIAV
Sbjct: 717 SALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVADRSKIAV 776
Query: 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823
GGHSYGAFMTANLLAHAPHLF CGIARSGAYNRTLTPFGFQNEDRTLWEAT+ YVEMSPF
Sbjct: 777 GGHSYGAFMTANLLAHAPHLFACGIARSGAYNRTLTPFGFQNEDRTLWEATNVYVEMSPF 836
Query: 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883
MSANK+KKPILL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLV+LP ESHGY+ARESI
Sbjct: 837 MSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGYSARESI 896
Query: 884 MHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTEADFEHD 943
MHVLWETDRWLQKYCV NT+D T D+SK +K +GGG E F
Sbjct: 897 MHVLWETDRWLQKYCVPNTSDADT-----SPDQSKEGSDSADKVSTGTGGGNPE--FGEH 949
Query: 944 GCHLAPRSSL 953
H R SL
Sbjct: 950 EVHSKLRRSL 959
|
Serine-type protease active in vitro against the LHCII N-terminal. Cleaves its substrate on the carboxy-side of Glu residues. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|Q10MJ1|CGEP_ORYSJ Probable glutamyl endopeptidase, chloroplastic OS=Oryza sativa subsp. japonica GN=GEP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1450 bits (3754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/874 (78%), Positives = 770/874 (88%), Gaps = 13/874 (1%)
Query: 82 AVATEDEDNLEGR--YRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELAR 139
+A ED+D YRLPP EI++IVDAPPLP LSFSP +DKILFLKRRALPPL +LA+
Sbjct: 76 GLAQEDDDLSSAMMGYRLPPKEIQDIVDAPPLPVLSFSPSKDKILFLKRRALPPLSDLAK 135
Query: 140 PEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQD 199
PEEKLAG+RIDG NTRSRMSFYTGIGIH+L DG LG E + G+P+GA++NFVTWSQD
Sbjct: 136 PEEKLAGVRIDGYSNTRSRMSFYTGIGIHKLMDDGTLGPEKVVHGYPEGARINFVTWSQD 195
Query: 200 GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259
G+HL+FS+R+D ED++S KLR+W+ADV++G+ARPLF+SP+IYLNAIFD+FVWVNNSTLLV
Sbjct: 196 GRHLSFSVRVDEEDNTSGKLRLWIADVESGEARPLFKSPEIYLNAIFDSFVWVNNSTLLV 255
Query: 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319
CTIPL RG PP+KP VP GPK+QSNE +++QVRTFQDLLKDEYD DLFDYYAT+QLVL
Sbjct: 256 CTIPLSRGAPPQKPSVPSGPKIQSNETSNVVQVRTFQDLLKDEYDADLFDYYATSQLVLA 315
Query: 320 SLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR 379
S DGTVK IGPPAVYTS+DPSPD+KY++ISSIHRPYS+IVPCGRFP++V +WT DG F+R
Sbjct: 316 SFDGTVKPIGPPAVYTSIDPSPDDKYLMISSIHRPYSYIVPCGRFPKKVELWTVDGEFIR 375
Query: 380 ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQ 439
ELCDLPLAEDIPIA +SVRKG RSI WR DKP+ LYW ETQDGGDAKVEV+PRDI+Y +
Sbjct: 376 ELCDLPLAEDIPIATSSVRKGKRSIYWRPDKPAMLYWVETQDGGDAKVEVSPRDIVYMEN 435
Query: 440 AEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499
AEP+ GE PEILHKLDLRY G SWCD+SLALVYESWYKTR+TRTWVISP KDV+PRILF
Sbjct: 436 AEPINGEQPEILHKLDLRYAGTSWCDESLALVYESWYKTRKTRTWVISPDKKDVSPRILF 495
Query: 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDI 559
DRSSEDVYSDPGSPM+RRT+ GTYVIAK+KK+ DE TYILLNG GATPEGN+PFLDLFDI
Sbjct: 496 DRSSEDVYSDPGSPMLRRTAMGTYVIAKVKKQ-DENTYILLNGMGATPEGNVPFLDLFDI 554
Query: 560 NTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619
NTGSKERIW+SDKEKYYET VALMSD+T+G+L L +LKILTSKESKTENTQYY+Q WP+K
Sbjct: 555 NTGSKERIWQSDKEKYYETVVALMSDKTDGELPLEKLKILTSKESKTENTQYYLQIWPEK 614
Query: 620 KSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPG 679
K QITDFPHPYPQLASL KE+I+YQRKDGVQL+ATLYLPPGYDPS+DGPLPCL WSYPG
Sbjct: 615 KQVQITDFPHPYPQLASLYKEMIRYQRKDGVQLTATLYLPPGYDPSQDGPLPCLVWSYPG 674
Query: 680 EFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQL 739
EFKSKDAAGQVRGSPNEFP IG+TS LLWLARGFAIL GPT PIIGEGDEEANDR+VEQL
Sbjct: 675 EFKSKDAAGQVRGSPNEFPGIGATSPLLWLARGFAILSGPTIPIIGEGDEEANDRYVEQL 734
Query: 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799
V AEAA EEVVRRGVAHP KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT
Sbjct: 735 VTSAEAAAEEVVRRGVAHPDKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 794
Query: 800 PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859
PFGFQNEDRTLWEAT+TYVEMSPFMSANK+KKPILL+HGE+DNNSGTLTMQSDRFFNALK
Sbjct: 795 PFGFQNEDRTLWEATNTYVEMSPFMSANKIKKPILLIHGEQDNNSGTLTMQSDRFFNALK 854
Query: 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKG 919
GHGAL RLVILPFESHGY+ARESIMHVLWETDRWLQKYC+S ++ +D
Sbjct: 855 GHGALSRLVILPFESHGYSARESIMHVLWETDRWLQKYCLSGSSKTDSD----------S 904
Query: 920 APHLQNKTVAASGGGGTEADFEHDGCHLAPRSSL 953
+NKTV+ASGGG E +G RS L
Sbjct: 905 VADTENKTVSASGGGAPCEGPEAEGFSSMQRSLL 938
|
Serine-type protease active in vitro against the LHCII N-terminal. Cleaves its substrate on the carboxy-side of Glu residues. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P34422|DPF6_CAEEL Dipeptidyl peptidase family member 6 OS=Caenorhabditis elegans GN=dpf-6 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 20/225 (8%)
Query: 690 VRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGD---EEANDRFVEQLVACAEA 745
V G P G + + WL RG+++L G G N + ++
Sbjct: 435 VHGGPKARDHYGFSPMNAWLTNRGYSVLQVNFRGSTGFGKRLTNAGNGEWGRKMHFDILD 494
Query: 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-----RTLTP 800
AVE V +G+A+ S++AV G SYG + T L P F CG+ G N + + P
Sbjct: 495 AVEFAVSKGIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLISLVQAIPP 554
Query: 801 F--GFQNE-------DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS 851
+ GF+ + D + E + SP A+++ KPI+++ G N+ +S
Sbjct: 555 YWLGFRKDLIKMVGADISDEEGRQSLQSRSPLFFADRVTKPIMIIQGA--NDPRVKQAES 612
Query: 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896
D+F AL+ ++ P E HG ++ M + +LQ+
Sbjct: 613 DQFVAALEKKHIPVTYLLYPDEGHGVRKPQNSMEQHGHIETFLQQ 657
|
Removes N-terminal dipeptides sequentially from polypeptides (By similarity). Essential for control of distal tip cell migration. Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
| >sp|P39839|YUXL_BACSU Uncharacterized peptidase YuxL OS=Bacillus subtilis (strain 168) GN=yuxL PE=3 SV=3 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 12/139 (8%)
Query: 746 AVEEVVRRG-VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN----RTLTP 800
AV+E ++R P ++ V G SYG FMT N + + F + + N ++
Sbjct: 496 AVDEAIKRDPHIDPKRLGVTGGSYGGFMT-NWIVGQTNRFKAAVTQRSISNWISFHGVSD 554
Query: 801 FGFQNED----RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856
G+ D ++E T + SP A ++ P+L++HGE D+ Q+++ F
Sbjct: 555 IGYFFTDWQLEHDMFEDTEKLWDRSPLKYAANVETPLLILHGERDDRCP--IEQAEQLFI 612
Query: 857 ALKGHGALCRLVILPFESH 875
ALK G +LV P SH
Sbjct: 613 ALKKMGKETKLVRFPNASH 631
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P13676|ACPH_RAT Acylamino-acid-releasing enzyme OS=Rattus norvegicus GN=Apeh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 22/177 (12%)
Query: 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-- 795
Q V + AVE+V++ ++A+ G S+G F++ +L+ P + IAR+ N
Sbjct: 558 QDVKDVQFAVEQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIA 617
Query: 796 ------------RTLTPFGFQNE---DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEE 840
T F + N D +WE ++ SP ++K P+LL+ G+E
Sbjct: 618 SMMGSTDIPDWCMVETGFPYSNSCLPDLNVWEEM---LDKSPIKYIPQVKTPVLLMLGQE 674
Query: 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
D Q ++ ALK RL++ P +H + E+ WL +
Sbjct: 675 DRR--VPFKQGMEYYRALKARNVPVRLLLYPKSNHALSEVEAESDSFMNAVLWLHTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|Q8R146|APEH_MOUSE Acylamino-acid-releasing enzyme OS=Mus musculus GN=Apeh PE=2 SV=3 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 16/174 (9%)
Query: 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-- 795
Q V + AV++V++ ++A+ G S+G F++ +L+ P + IAR+ N
Sbjct: 558 QDVKDVQFAVQQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIV 617
Query: 796 ------------RTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNN 843
T F + N+ ++ SP ++K P+LL+ G+ED
Sbjct: 618 SMMGTTDIPDWCMVETGFPYSNDYLPDLNVLEEMLDKSPIKYIPQVKTPVLLMLGQEDRR 677
Query: 844 SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
Q +++ALK RL++ P +H + E T WL +
Sbjct: 678 --VPFKQGLEYYHALKARNVPVRLLLYPKSTHALSEVEVESDSFMNTVLWLHTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P19205|ACPH_PIG Acylamino-acid-releasing enzyme OS=Sus scrofa GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 27/173 (15%)
Query: 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-- 795
Q V + AVE+V++ ++A+ G S+G F++ +L+ P + + R+ N
Sbjct: 558 QDVKDVQFAVEQVLQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIA 617
Query: 796 ----------RTLTPFGFQNE-----DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEE 840
+ GF D ++W A ++ SP A ++K P+LL+ G+E
Sbjct: 618 SMMGSTDIPDWCMVEAGFSYSSDCLPDLSVWAAM---LDKSPIKYAPQVKTPLLLMLGQE 674
Query: 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE----SIMH-VLW 888
D Q ++ LK RL++ P +H + E S M+ VLW
Sbjct: 675 DRR--VPFKQGMEYYRVLKARNVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 725
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P14740|DPP4_RAT Dipeptidyl peptidase 4 OS=Rattus norvegicus GN=Dpp4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 103/258 (39%), Gaps = 34/258 (13%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL---WLARG 712
+ LPP +D SK PL ++ P K+ DAA ++ N + ST ++ + RG
Sbjct: 529 MILPPHFDKSKKYPLLIDVYAGPCSQKA-DAAFRL----NWATYLASTENIIVASFDGRG 583
Query: 713 FAILGGPTTPIIGE--GDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGA 770
G I + G E D+ A + ++ G ++A+ G SYG
Sbjct: 584 SGYQGDKIMHAINKRLGTLEVEDQI---------EAARQFLKMGFVDSKRVAIWGWSYGG 634
Query: 771 FMTANLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGFQNEDRTLWEATSTYVEMSPF 823
++T+ +L +F CGIA R Y+ T G + L Y +
Sbjct: 635 YVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNL----DHYRNSTVM 690
Query: 824 MSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES 882
A K+ LL+HG D+N QS + AL G + + E HG A+ +
Sbjct: 691 SRAENFKQVEYLLIHGTADDN--VHFQQSAQISKALVDAGVDFQAMWYTDEDHGIASSTA 748
Query: 883 IMHVLWETDRWLQKYCVS 900
H+ +LQ+ C S
Sbjct: 749 HQHIYSHMSHFLQQ-CFS 765
|
Cell surface glycoprotein receptor involved in the costimulatory signal essential for T-cell receptor (TCR)-mediated T-cell activation. Acts as a positive regulator of T-cell coactivation, by binding at least ADA, CAV1, IGF2R, and PTPRC. Its binding to CAV1 and CARD11 induces T-cell proliferation and NF-kappa-B activation in a T-cell receptor/CD3-dependent manner. Its interaction with ADA also regulates lymphocyte-epithelial cell adhesion. In association with FAP is involved in the pericellular proteolysis of the extracellular matrix (ECM), the migration and invasion of endothelial cells into the ECM. May be involved in the promotion of lymphatic endothelial cells adhesion, migration and tube formation. When overexpressed, enhanced cell proliferation, a process inhibited by GPC3. Acts also as a serine exopeptidase with a dipeptidyl peptidase activity that regulates various physiological processes by cleaving peptides in the circulation, including many chemokines, mitogenic growth factors, neuropeptides and peptide hormones (By similarity). Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|P13798|ACPH_HUMAN Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=1 SV=4 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 27/173 (15%)
Query: 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-- 795
Q V + AVE+V++ S +A+ G S+G F++ +L+ P + +AR+ N
Sbjct: 558 QDVKDVQFAVEQVLQEEHFDASHVALMGGSHGGFISCHLIGQYPETYRACVARNPVINIA 617
Query: 796 ----RTLTP--------FGFQNE---DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEE 840
T P F F ++ D ++W + ++ SP ++K P+LL+ G+E
Sbjct: 618 SMLGSTDIPDWCVVEAGFPFSSDCLPDLSVW---AEMLDKSPIRYIPQVKTPLLLMLGQE 674
Query: 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE----SIMH-VLW 888
D Q ++ ALK RL++ P +H + E S M+ VLW
Sbjct: 675 DRR--VPFKQGMEYYRALKTRNVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 725
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P28843|DPP4_MOUSE Dipeptidyl peptidase 4 OS=Mus musculus GN=Dpp4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 104/258 (40%), Gaps = 34/258 (13%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
+ LPP +D SK PL ++ P K+ DA+ ++ N + ST ++ A
Sbjct: 522 MILPPHFDKSKKYPLLLDVYAGPCSQKA-DASFRL----NWATYLASTENII-----VAS 571
Query: 716 LGGPTTPIIGEGDEEANDRFVEQL-VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA 774
G + G+ A +R + L V A + V+ G ++A+ G SYG ++T+
Sbjct: 572 FDGRGSGYQGDKIMHAINRRLGTLEVEDQIEAARQFVKMGFVDSKRVAIWGWSYGGYVTS 631
Query: 775 NLLAHAPHLFCCGIA-----RSGAYNRTLT------PFGFQNEDRTLWEATSTYVEMSPF 823
+L +F CGIA R Y+ T P N D Y +
Sbjct: 632 MVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPIPEDNLDH--------YRNSTVM 683
Query: 824 MSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES 882
A K+ LL+HG D+N QS + AL G + + E HG A+ +
Sbjct: 684 SRAEHFKQVEYLLIHGTADDN--VHFQQSAQISKALVDAGVDFQAMWYTDEDHGIASSTA 741
Query: 883 IMHVLWETDRWLQKYCVS 900
H+ +LQ+ C S
Sbjct: 742 HQHIYSHMSHFLQQ-CFS 758
|
Cell surface glycoprotein receptor involved in the costimulatory signal essential for T-cell receptor (TCR)-mediated T-cell activation. Acts as a positive regulator of T-cell coactivation, by binding at least ADA, CAV1, IGF2R, and PTPRC. Its binding to CAV1 and CARD11 induces T-cell proliferation and NF-kappa-B activation in a T-cell receptor/CD3-dependent manner. Its interaction with ADA also regulates lymphocyte-epithelial cell adhesion. In association with FAP is involved in the pericellular proteolysis of the extracellular matrix (ECM), the migration and invasion of endothelial cells into the ECM. May be involved in the promotion of lymphatic endothelial cells adhesion, migration and tube formation. When overexpressed, enhanced cell proliferation, a process inhibited by GPC3. Acts also as a serine exopeptidase with a dipeptidyl peptidase activity that regulates various physiological processes by cleaving peptides in the circulation, including many chemokines, mitogenic growth factors, neuropeptides and peptide hormones. Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 953 | ||||||
| 359479944 | 961 | PREDICTED: probable glutamyl endopeptida | 0.986 | 0.978 | 0.802 | 0.0 | |
| 297743980 | 913 | unnamed protein product [Vitis vinifera] | 0.942 | 0.983 | 0.827 | 0.0 | |
| 224130988 | 967 | predicted protein [Populus trichocarpa] | 0.961 | 0.947 | 0.815 | 0.0 | |
| 255548453 | 926 | dipeptidyl-peptidase, putative [Ricinus | 0.924 | 0.951 | 0.800 | 0.0 | |
| 224064539 | 905 | predicted protein [Populus trichocarpa] | 0.937 | 0.986 | 0.810 | 0.0 | |
| 357511363 | 962 | Acylamino-acid-releasing enzyme [Medicag | 0.958 | 0.949 | 0.777 | 0.0 | |
| 297828471 | 962 | serine-type peptidase [Arabidopsis lyrat | 0.941 | 0.932 | 0.791 | 0.0 | |
| 30690669 | 961 | prolyl oligopeptidase-like protein [Arab | 0.941 | 0.933 | 0.790 | 0.0 | |
| 332278170 | 960 | RecName: Full=Probable glutamyl endopept | 0.940 | 0.933 | 0.789 | 0.0 | |
| 18086370 | 960 | At2g47390/T8I13.23 [Arabidopsis thaliana | 0.940 | 0.933 | 0.787 | 0.0 |
| >gi|359479944|ref|XP_002270510.2| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1592 bits (4121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 774/965 (80%), Positives = 859/965 (89%), Gaps = 25/965 (2%)
Query: 8 LHKVCHRGVSLLT---PSSLSPPIFLCLKL-----GRVPGHLRT-----HSIKTTTAMTA 54
++K HR +SLL+ P SLSPP FL L L R G LRT T AM++
Sbjct: 3 INKAYHR-LSLLSHHLPFSLSPPHFLSLSLPRFTSTRTRGRLRTLPSCAGGTTTRAAMSS 61
Query: 55 SRLHHLVPIHSVSSKND---GTNGSLSSSNAVATEDEDN--LEGRYRLPPPEIREIVDAP 109
SR HLVPI++ +++ D G+NGS+SS+ EDE+N L YRLPPPEI++IVDAP
Sbjct: 62 SRFLHLVPINAAAAEGDTGVGSNGSVSST----AEDEENSALGSGYRLPPPEIKDIVDAP 117
Query: 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQ 169
PLPALSFSPQRDKILFLKRRALPPLEELA+PEEKLAG+RIDGKCNTRSRMSFYT IGIHQ
Sbjct: 118 PLPALSFSPQRDKILFLKRRALPPLEELAKPEEKLAGIRIDGKCNTRSRMSFYTSIGIHQ 177
Query: 170 LFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG 229
L PDG LG E E+ GFPDGAK+NFV+WS +G+HL+FSIR+D E++SSSKLR+WVADV+TG
Sbjct: 178 LMPDGTLGPEKEVHGFPDGAKINFVSWSLNGQHLSFSIRVD-EENSSSKLRIWVADVETG 236
Query: 230 KARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDI 289
KARPLFQSPDI+LNA+FDNFVWV++STLLVCTIPL RGDPPKKPLVP GPK+QSNE++++
Sbjct: 237 KARPLFQSPDIHLNAVFDNFVWVDDSTLLVCTIPLSRGDPPKKPLVPSGPKVQSNEQKNV 296
Query: 290 IQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILIS 349
+QVRTFQDLLKDEYD DLFDYYATTQLVL SLDGT+KEIGPPAVYTS+DPSPD+KY+LIS
Sbjct: 297 VQVRTFQDLLKDEYDADLFDYYATTQLVLASLDGTMKEIGPPAVYTSMDPSPDQKYLLIS 356
Query: 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409
SIHRPYSFIVPCGRFP++V +WT++G FVRELCDLPLAEDIPIAFNSVRKGMRSINWR+D
Sbjct: 357 SIHRPYSFIVPCGRFPKKVDLWTSEGKFVRELCDLPLAEDIPIAFNSVRKGMRSINWRAD 416
Query: 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469
KPSTLYW ETQD GDAKVEV+PRDI+Y Q AEP+ GE ILHKLDLRYGGISWCDDSLA
Sbjct: 417 KPSTLYWVETQDEGDAKVEVSPRDIVYMQPAEPLDGEQQAILHKLDLRYGGISWCDDSLA 476
Query: 470 LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529
LVYESWYKTRRTRTWVISPGS+DV+PRILFDRSSEDVYSDPGSPM+RRT+ GTYVIAKIK
Sbjct: 477 LVYESWYKTRRTRTWVISPGSEDVSPRILFDRSSEDVYSDPGSPMLRRTTAGTYVIAKIK 536
Query: 530 KENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEG 589
KENDEGTYILLNG+GATPEGNIPFLDLFDINTGSKERIWESDKEKYYET VALMSDQ+EG
Sbjct: 537 KENDEGTYILLNGSGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETVVALMSDQSEG 596
Query: 590 DLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDG 649
DLYLNQLKILTSKESKTENTQY+IQSW DKK+CQIT+FPHPYPQLASLQKE+I+Y+RKDG
Sbjct: 597 DLYLNQLKILTSKESKTENTQYFIQSWLDKKACQITNFPHPYPQLASLQKEMIRYERKDG 656
Query: 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL 709
VQL+ATLYLPPGYDPSKDGPLPCL WSYPGEFKSKDAAGQVRGSPNEF IG TS LLWL
Sbjct: 657 VQLTATLYLPPGYDPSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEFAGIGPTSALLWL 716
Query: 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYG 769
AR FAIL GPT PIIGEG+EEANDR+VEQLVA AEAAVEEV+RRGVAHP+KIAVGGHSYG
Sbjct: 717 ARRFAILSGPTIPIIGEGNEEANDRYVEQLVASAEAAVEEVIRRGVAHPNKIAVGGHSYG 776
Query: 770 AFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL 829
AFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEAT TYVEMSPFMSANK+
Sbjct: 777 AFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATDTYVEMSPFMSANKI 836
Query: 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889
K+P+LL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE
Sbjct: 837 KRPVLLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 896
Query: 890 TDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTE-ADFEHDGCHLA 948
TDRWLQK+CVSNT + + +L D+ + ++KTV ASGGG E A+ EH+G H
Sbjct: 897 TDRWLQKHCVSNTTNVNENLDTCNDEAKEEITDPESKTVPASGGGNPELAESEHEGFHPR 956
Query: 949 PRSSL 953
R+SL
Sbjct: 957 ARASL 961
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743980|emb|CBI36950.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1578 bits (4087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 751/908 (82%), Positives = 832/908 (91%), Gaps = 10/908 (1%)
Query: 52 MTASRLHHLVPIHSVSSKND---GTNGSLSSSNAVATEDEDN--LEGRYRLPPPEIREIV 106
M++SR HLVPI++ +++ D G+NGS+SS+ EDE+N L YRLPPPEI++IV
Sbjct: 1 MSSSRFLHLVPINAAAAEGDTGVGSNGSVSST----AEDEENSALGSGYRLPPPEIKDIV 56
Query: 107 DAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIG 166
DAPPLPALSFSPQRDKILFLKRRALPPLEELA+PEEKLAG+RIDGKCNTRSRMSFYT IG
Sbjct: 57 DAPPLPALSFSPQRDKILFLKRRALPPLEELAKPEEKLAGIRIDGKCNTRSRMSFYTSIG 116
Query: 167 IHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV 226
IHQL PDG LG E E+ GFPDGAK+NFV+WS +G+HL+FSIR+D E++SSSKLR+WVADV
Sbjct: 117 IHQLMPDGTLGPEKEVHGFPDGAKINFVSWSLNGQHLSFSIRVDEEENSSSKLRIWVADV 176
Query: 227 DTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEK 286
+TGKARPLFQSPDI+LNA+FDNFVWV++STLLVCTIPL RGDPPKKPLVP GPK+QSNE+
Sbjct: 177 ETGKARPLFQSPDIHLNAVFDNFVWVDDSTLLVCTIPLSRGDPPKKPLVPSGPKVQSNEQ 236
Query: 287 RDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYI 346
++++QVRTFQDLLKDEYD DLFDYYATTQLVL SLDGT+KEIGPPAVYTS+DPSPD+KY+
Sbjct: 237 KNVVQVRTFQDLLKDEYDADLFDYYATTQLVLASLDGTMKEIGPPAVYTSMDPSPDQKYL 296
Query: 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINW 406
LISSIHRPYSFIVPCGRFP++V +WT++G FVRELCDLPLAEDIPIAFNSVRKGMRSINW
Sbjct: 297 LISSIHRPYSFIVPCGRFPKKVDLWTSEGKFVRELCDLPLAEDIPIAFNSVRKGMRSINW 356
Query: 407 RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466
R+DKPSTLYW ETQD GDAKVEV+PRDI+Y Q AEP+ GE ILHKLDLRYGGISWCDD
Sbjct: 357 RADKPSTLYWVETQDEGDAKVEVSPRDIVYMQPAEPLDGEQQAILHKLDLRYGGISWCDD 416
Query: 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIA 526
SLALVYESWYKTRRTRTWVISPGS+DV+PRILFDRSSEDVYSDPGSPM+RRT+ GTYVIA
Sbjct: 417 SLALVYESWYKTRRTRTWVISPGSEDVSPRILFDRSSEDVYSDPGSPMLRRTTAGTYVIA 476
Query: 527 KIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQ 586
KIKKENDEGTYILLNG+GATPEGNIPFLDLFDINTGSKERIWESDKEKYYET VALMSDQ
Sbjct: 477 KIKKENDEGTYILLNGSGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETVVALMSDQ 536
Query: 587 TEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQR 646
+EGDLYLNQLKILTSKESKTENTQY+IQSW DKK+CQIT+FPHPYPQLASLQKE+I+Y+R
Sbjct: 537 SEGDLYLNQLKILTSKESKTENTQYFIQSWLDKKACQITNFPHPYPQLASLQKEMIRYER 596
Query: 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVL 706
KDGVQL+ATLYLPPGYDPSKDGPLPCL WSYPGEFKSKDAAGQVRGSPNEF IG TS L
Sbjct: 597 KDGVQLTATLYLPPGYDPSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEFAGIGPTSAL 656
Query: 707 LWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGH 766
LWLAR FAIL GPT PIIGEG+EEANDR+VEQLVA AEAAVEEV+RRGVAHP+KIAVGGH
Sbjct: 657 LWLARRFAILSGPTIPIIGEGNEEANDRYVEQLVASAEAAVEEVIRRGVAHPNKIAVGGH 716
Query: 767 SYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSA 826
SYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEAT TYVEMSPFMSA
Sbjct: 717 SYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATDTYVEMSPFMSA 776
Query: 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886
NK+K+P+LL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV
Sbjct: 777 NKIKRPVLLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 836
Query: 887 LWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTE-ADFEHDGC 945
LWETDRWLQK+CVSNT + + +L D+ + ++KTV ASGGG E A+ EH+G
Sbjct: 837 LWETDRWLQKHCVSNTTNVNENLDTCNDEAKEEITDPESKTVPASGGGNPELAESEHEGF 896
Query: 946 HLAPRSSL 953
H R+SL
Sbjct: 897 HPRARASL 904
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130988|ref|XP_002320974.1| predicted protein [Populus trichocarpa] gi|222861747|gb|EEE99289.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1561 bits (4042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 760/932 (81%), Positives = 835/932 (89%), Gaps = 16/932 (1%)
Query: 36 RVPGHLRTHS---IKTTTAMTASRLHHLVPIHSVSSKNDGTNGSLSSSNAVATEDEDNLE 92
R PGHLRTH K+ MT SR +LVP++S++++N G + S S+A +TEDE+ L
Sbjct: 38 RTPGHLRTHHSKRFKSICTMT-SRFPNLVPLNSIAAENVGGRSNDSVSSA-STEDEEALA 95
Query: 93 GRYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGK 152
G+Y+LPPPEI+ IVDAPPLPALSFSPQRDKILFLKRR+LPPL ELARPEEKLAG+RIDGK
Sbjct: 96 GKYQLPPPEIKNIVDAPPLPALSFSPQRDKILFLKRRSLPPLAELARPEEKLAGMRIDGK 155
Query: 153 CNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAE 212
CNTRSRMSFYTGIGIHQL PDG LG E EI G+PDGAK+NFVTWS DG+HLAFSIR D E
Sbjct: 156 CNTRSRMSFYTGIGIHQLMPDGILGPEREIHGYPDGAKINFVTWSLDGRHLAFSIRFDEE 215
Query: 213 DSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272
D+SSSKLRVWVA+V+TG+ARPLFQSP++YLNA+FD FVWV+NSTLLVC IP RGD PKK
Sbjct: 216 DNSSSKLRVWVANVETGQARPLFQSPNVYLNAVFDTFVWVDNSTLLVCAIPSSRGDLPKK 275
Query: 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPA 332
PLVP GPK+QSNE++++IQVRTFQDLLKDEYDEDLFDYYAT+QLVL SLDGT KEIG PA
Sbjct: 276 PLVPSGPKIQSNEQKNVIQVRTFQDLLKDEYDEDLFDYYATSQLVLASLDGTTKEIGNPA 335
Query: 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392
VYTS+DPSPD+KY+L+SSIHRPYSF VPCGRFP++V VWTTDG FVRE+CDLPLAEDIPI
Sbjct: 336 VYTSMDPSPDQKYLLVSSIHRPYSFTVPCGRFPKKVEVWTTDGKFVREVCDLPLAEDIPI 395
Query: 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH 452
A +SVRKGMR+INWR+DKPSTLYWAETQDGGDAKVEV+PRDIIYTQ AEP++GE PEILH
Sbjct: 396 AISSVRKGMRNINWRADKPSTLYWAETQDGGDAKVEVSPRDIIYTQPAEPLEGEQPEILH 455
Query: 453 KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGS 512
KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP SKDV+PRILFDRSSEDVYSDPGS
Sbjct: 456 KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPCSKDVSPRILFDRSSEDVYSDPGS 515
Query: 513 PMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572
PM+RRT GTYVIAKIKKENDEGTYILLNG+GAT EGNIPFLDLFDIN GSKERIWES+K
Sbjct: 516 PMLRRTPAGTYVIAKIKKENDEGTYILLNGSGATSEGNIPFLDLFDINAGSKERIWESEK 575
Query: 573 EKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYP 632
EKYYET V+LMSD EGDL L++LK+LTSKESKTENTQY I+ WP+KK CQIT+FPHPYP
Sbjct: 576 EKYYETVVSLMSDYEEGDLLLDRLKLLTSKESKTENTQYSIKKWPEKKVCQITNFPHPYP 635
Query: 633 QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRG 692
QLASLQKE+IKYQR DGVQL+ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRG
Sbjct: 636 QLASLQKEMIKYQRNDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRG 695
Query: 693 SPNEFPRIGSTSVLLWLARG----------FAILGGPTTPIIGEGDEEANDRFVEQLVAC 742
SPNEF IG TS LLWLAR FAIL GPT PIIGEGD+EANDR+VEQLVA
Sbjct: 696 SPNEFAGIGPTSALLWLARRHEFFPPFLVMFAILSGPTIPIIGEGDKEANDRYVEQLVAS 755
Query: 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 802
AEAAVEEV+RRGVAHP+KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG
Sbjct: 756 AEAAVEEVIRRGVAHPNKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 815
Query: 803 FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
FQNEDRTLWEAT TYVEMSPFMSANK+KKPILL+HGEEDNNSGTLTMQSDRFFNALKGHG
Sbjct: 816 FQNEDRTLWEATGTYVEMSPFMSANKIKKPILLIHGEEDNNSGTLTMQSDRFFNALKGHG 875
Query: 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPH 922
ALCRLVILPFESHGYAARESI+HVLWETDRWLQK+CVSN++D S +L KD+ SKG
Sbjct: 876 ALCRLVILPFESHGYAARESILHVLWETDRWLQKHCVSNSSDASAELDACKDEVSKGVTD 935
Query: 923 LQNKTVAASGGGGTE-ADFEHDGCHLAPRSSL 953
N+ V ASGGGG E ADFEH+G + PRS L
Sbjct: 936 SDNQAVVASGGGGPELADFEHEGFYPLPRSLL 967
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548453|ref|XP_002515283.1| dipeptidyl-peptidase, putative [Ricinus communis] gi|223545763|gb|EEF47267.1| dipeptidyl-peptidase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1527 bits (3953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 740/924 (80%), Positives = 807/924 (87%), Gaps = 43/924 (4%)
Query: 37 VPGHLRTHSIKTTT---AMTA--SRLHHLVPIHSVSSKNDGTNG-SLSSSNAVATEDEDN 90
PGHLRTHS T+ MTA SRL +L+P + + + G S ++S + ED++
Sbjct: 39 TPGHLRTHSRSTSNFKPIMTAATSRLANLLPASAFAGEAADGGGGSNNASTNIVAEDDEA 98
Query: 91 LEGRYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRID 150
L G+Y+LPPPEIR+IVDAPPLPALSFSPQRDKILFLKRRALPPL ELARPEEKLAG+RID
Sbjct: 99 LGGKYQLPPPEIRDIVDAPPLPALSFSPQRDKILFLKRRALPPLAELARPEEKLAGMRID 158
Query: 151 GKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRID 210
GKCNTRSRMSFYTGI IHQL PDG LG E E+ GFPDGAK+NFVTWS DG+HL+FSIR+D
Sbjct: 159 GKCNTRSRMSFYTGINIHQLMPDGTLGPEKEVHGFPDGAKINFVTWSLDGRHLSFSIRVD 218
Query: 211 AEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270
ED+SSSKLRVWVADV+TGKARPLFQS D+YLNA+FDNFVWV+ S+L
Sbjct: 219 EEDNSSSKLRVWVADVETGKARPLFQSSDVYLNAVFDNFVWVDESSL------------- 265
Query: 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP 330
TFQDLLKDEYDEDLFDYYAT+QLVL SLDGT+KEIGP
Sbjct: 266 -----------------------TFQDLLKDEYDEDLFDYYATSQLVLASLDGTLKEIGP 302
Query: 331 PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390
PAVYTS+DPSPD+KYILISSIHRPYSFIVPCGRFP++V +WTTDG FVRELCDLPLAEDI
Sbjct: 303 PAVYTSMDPSPDQKYILISSIHRPYSFIVPCGRFPKKVEIWTTDGKFVRELCDLPLAEDI 362
Query: 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450
PIAFNSVRKGMR+INWRSDKPSTLYWAETQDGGDAKVEV+PRDI+Y Q AEP+ GE PEI
Sbjct: 363 PIAFNSVRKGMRAINWRSDKPSTLYWAETQDGGDAKVEVSPRDIVYAQLAEPLDGEQPEI 422
Query: 451 LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510
L KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG++DV+PRILFDRSSEDVYSDP
Sbjct: 423 LQKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGAEDVSPRILFDRSSEDVYSDP 482
Query: 511 GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570
GSPMMRRT +G YVIAKIKKENDEGTY+LLNG+GATPEG+IPFLDLFDINTGSKERIW+S
Sbjct: 483 GSPMMRRTPSGNYVIAKIKKENDEGTYVLLNGSGATPEGDIPFLDLFDINTGSKERIWQS 542
Query: 571 DKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHP 630
DKEK+YE+ VALMSD EGDLYL+QLK+LTSKESKTENTQYYIQSWPDKK+CQIT+FPHP
Sbjct: 543 DKEKHYESVVALMSDIKEGDLYLDQLKVLTSKESKTENTQYYIQSWPDKKACQITNFPHP 602
Query: 631 YPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQV 690
YPQLASLQKE+I+YQRKDGVQL+ATLYLPPGYDPSKDGPLPCL WSYPGEFKSKDAAGQV
Sbjct: 603 YPQLASLQKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLVWSYPGEFKSKDAAGQV 662
Query: 691 RGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEV 750
RGSPNEF IG TSVLLWLAR FAIL GPT PIIGEGD+EANDR+VEQLVA AEAAVEEV
Sbjct: 663 RGSPNEFAGIGPTSVLLWLARRFAILAGPTIPIIGEGDDEANDRYVEQLVASAEAAVEEV 722
Query: 751 VRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTL 810
+RRGVAHP KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTL
Sbjct: 723 IRRGVAHPGKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTL 782
Query: 811 WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 870
WEAT+TYVEMSPFMSANK+KKPILL+HGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL
Sbjct: 783 WEATTTYVEMSPFMSANKIKKPILLIHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 842
Query: 871 PFESHGYAARESIMHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAA 930
PFESHGYAARESIMHVLWETDRWLQKYCV NT+D + +L KD+ SKG +N VAA
Sbjct: 843 PFESHGYAARESIMHVLWETDRWLQKYCVPNTSDVNAELGARKDEASKGVIDTENNAVAA 902
Query: 931 SGGGGTE-ADFEHDGCHLAPRSSL 953
+GGGG E AD EH+G H PRS L
Sbjct: 903 TGGGGPELADSEHEGFHCIPRSLL 926
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064539|ref|XP_002301512.1| predicted protein [Populus trichocarpa] gi|222843238|gb|EEE80785.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1524 bits (3947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 728/898 (81%), Positives = 812/898 (90%), Gaps = 5/898 (0%)
Query: 56 RLHHLVPIHSVSSKNDGTNGSLSSSNAVATEDEDNLEGRYRLPPPEIREIVDAPPLPALS 115
RL +LVP++S++++N + + S S+ TE+E+ L +Y+LPPPEI++IVDAPPLPALS
Sbjct: 4 RLGNLVPLNSIAAENVVSRSNASVSSTSTTEEEEALACKYQLPPPEIKDIVDAPPLPALS 63
Query: 116 FSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGK 175
SPQ+DKILFLKRR+LPPL ELARPEEKLAGLRIDGKCNT+SRMSFYTGIGIHQL PDG
Sbjct: 64 LSPQKDKILFLKRRSLPPLAELARPEEKLAGLRIDGKCNTKSRMSFYTGIGIHQLMPDGT 123
Query: 176 LGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLF 235
LG E E+ G+PDGAK+NFVTWS DG+HLAFSIR+ ED+SSSKLRVWVA+++TG+ARPLF
Sbjct: 124 LGPEKEVHGYPDGAKINFVTWSLDGRHLAFSIRVFEEDNSSSKLRVWVANMETGQARPLF 183
Query: 236 QSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTF 295
QSPD+YLNA+FDNFVWV+NS+LLVCTIP RGDPPKKP VP GPK+QSNE+++++QVRTF
Sbjct: 184 QSPDVYLNAVFDNFVWVDNSSLLVCTIPSSRGDPPKKPSVPSGPKIQSNEQKNVVQVRTF 243
Query: 296 QDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPY 355
QDLLKDEYDEDLFDYY T+Q+VL SLDGT KE+GPPAVYTS+DPSPD+ Y+LISSIHRPY
Sbjct: 244 QDLLKDEYDEDLFDYYTTSQIVLASLDGTAKEVGPPAVYTSMDPSPDQNYLLISSIHRPY 303
Query: 356 SFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415
SFIVP GRFP++V VWTTDG FVRELCDLPLAEDIPIA +SVRKG R+INWR+DKPSTLY
Sbjct: 304 SFIVPRGRFPKKVEVWTTDGKFVRELCDLPLAEDIPIATSSVRKGKRAINWRADKPSTLY 363
Query: 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475
WAETQDGGDAKVEV+PRDI+YTQ AEP++GE PEILHKLDLRYGGI WCDDSLALVYESW
Sbjct: 364 WAETQDGGDAKVEVSPRDIVYTQPAEPLEGEQPEILHKLDLRYGGIYWCDDSLALVYESW 423
Query: 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEG 535
YKTRRTRTWVISPGSKD +PRILFDRSSEDVYSDPGSPM+RRT GTYVIAKIKKENDEG
Sbjct: 424 YKTRRTRTWVISPGSKDASPRILFDRSSEDVYSDPGSPMLRRTPAGTYVIAKIKKENDEG 483
Query: 536 TYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQ 595
TY+LL G+GATPEGNIPFLDLFDINTGSKERIWESDKE+YYET VALM D EGDL L++
Sbjct: 484 TYVLLKGSGATPEGNIPFLDLFDINTGSKERIWESDKERYYETVVALMLDYEEGDLLLDR 543
Query: 596 LKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSAT 655
L+ILTSKESKTEN QY+IQ WP+KK+CQIT+FPHPYPQLASLQKE+I+YQRKDGVQL+AT
Sbjct: 544 LQILTSKESKTENRQYFIQKWPEKKACQITNFPHPYPQLASLQKEMIRYQRKDGVQLTAT 603
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
LYLPPGYD SKDGPLPCL WSYPGEFKSKDAAGQVRGSPN+F IGSTS LLW FAI
Sbjct: 604 LYLPPGYDSSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNKFAGIGSTSALLW----FAI 659
Query: 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775
L GPT PIIGEGDEEANDR+VEQLVA EAAVEEV++RGVAHP+KIAVGGHSYGAFMTAN
Sbjct: 660 LSGPTIPIIGEGDEEANDRYVEQLVASVEAAVEEVIQRGVAHPNKIAVGGHSYGAFMTAN 719
Query: 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILL 835
LLAHAPHLFCCGIARSGAYNRTLTPFGFQ+EDRTLWEAT+TYVEMSPFMSANK+KKPILL
Sbjct: 720 LLAHAPHLFCCGIARSGAYNRTLTPFGFQHEDRTLWEATTTYVEMSPFMSANKIKKPILL 779
Query: 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895
+HGEEDNNSGTL MQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ
Sbjct: 780 IHGEEDNNSGTLNMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 839
Query: 896 KYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTE-ADFEHDGCHLAPRSS 952
K+CV N D S +L KD+ SKG N+ V ASGGGG E ADFEH+G + PR S
Sbjct: 840 KHCVQNPTDASAELDACKDEVSKGVRDSDNQAVVASGGGGPELADFEHEGFYSLPRFS 897
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511363|ref|XP_003625970.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355500985|gb|AES82188.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1506 bits (3900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 718/923 (77%), Positives = 806/923 (87%), Gaps = 10/923 (1%)
Query: 41 LRTHSIKTTTAMTASRLHHLVPIHSVSSKNDG---TNGSLSSSNAVAT----EDEDNLEG 93
LR + +M+ SR H+VP+ +VS+++ NGS+SSS+ T ED+ L
Sbjct: 40 LRRRTAANFASMSTSRFRHIVPLAAVSTEDGAGGAVNGSVSSSSTADTYYDYEDDLALGV 99
Query: 94 RYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKC 153
Y +PPPEIR+IVDAPP+PALSFSP RDKI+FLKRRALPPL +LARPEEKLAGLRIDG C
Sbjct: 100 GYCVPPPEIRDIVDAPPVPALSFSPFRDKIIFLKRRALPPLTDLARPEEKLAGLRIDGYC 159
Query: 154 NTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAED 213
N+RSRMSFYTG+GIH++ PDG LG E+EI GFP+GAK+NFVTWS D +HL+FSIR++ ED
Sbjct: 160 NSRSRMSFYTGLGIHEILPDGTLGPEVEIHGFPEGAKINFVTWSPDARHLSFSIRVNEED 219
Query: 214 SSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273
S++SKL VWVADV+TGKARPLFQSPD+YLNA+F+N+VWV+NSTLLVCTIP RG PPKKP
Sbjct: 220 SNTSKLSVWVADVETGKARPLFQSPDVYLNAVFENYVWVDNSTLLVCTIPSTRGAPPKKP 279
Query: 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAV 333
LVP GPK+QSNE+++IIQVRTFQDLLKDEYDEDLFDYYAT+QLVL SLDGT K+ GPPA+
Sbjct: 280 LVPGGPKIQSNEQKNIIQVRTFQDLLKDEYDEDLFDYYATSQLVLASLDGTTKDFGPPAI 339
Query: 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIA 393
YTSLDPSPDEKYI+I S+HRPYSFIVPCGRFP++V +W+ DG FVRE+CDLPLAEDIPI
Sbjct: 340 YTSLDPSPDEKYIMIDSMHRPYSFIVPCGRFPKKVELWSADGKFVREICDLPLAEDIPIT 399
Query: 394 FNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK 453
NSVRKGMRSINWR+DKPSTLYW ETQDGGDAKVEV+PRDIIY+Q AE ++GE P ILHK
Sbjct: 400 SNSVRKGMRSINWRADKPSTLYWVETQDGGDAKVEVSPRDIIYSQPAEALEGEQPVILHK 459
Query: 454 LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSP 513
LDLRYGGISWCDDSLA VYESWYKTRR +TWV+SPGS+DV PRILFDRSSEDVYSDPGSP
Sbjct: 460 LDLRYGGISWCDDSLAFVYESWYKTRRIKTWVVSPGSEDVTPRILFDRSSEDVYSDPGSP 519
Query: 514 MMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKE 573
M+RRT GTY+IAKIKK DEG YI+LNG+GATPEGN+PFLDLFDINTGSKERIWESDKE
Sbjct: 520 MLRRTQAGTYIIAKIKKGGDEGRYIILNGSGATPEGNVPFLDLFDINTGSKERIWESDKE 579
Query: 574 KYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQ 633
KY+ET VALMSDQ EGDL L++LKIL SKESKTENTQY SWPDKK Q+T+FPHPYPQ
Sbjct: 580 KYFETVVALMSDQEEGDLQLDRLKILASKESKTENTQYNFISWPDKKIVQVTNFPHPYPQ 639
Query: 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGS 693
LASLQKE+I+Y+RKDGVQL+ATLYLPPGY+PS DGPLPCL WSYPGEFKSKDAA QVRGS
Sbjct: 640 LASLQKEMIRYKRKDGVQLTATLYLPPGYNPSTDGPLPCLVWSYPGEFKSKDAASQVRGS 699
Query: 694 PNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR 753
PNEF IGSTS LLWLA+ FAIL GPT PIIGEG+ EAND +VEQLVA AEAAVEEV+RR
Sbjct: 700 PNEFAGIGSTSALLWLAKRFAILSGPTIPIIGEGEVEANDSYVEQLVASAEAAVEEVIRR 759
Query: 754 GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEA 813
GVAHP KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEA
Sbjct: 760 GVAHPKKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEA 819
Query: 814 TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873
T+TYVEMSPFMSANK+KKPILL+HGEEDNNSGTLTMQSDRFFNALKGHGAL RLVILP+E
Sbjct: 820 TNTYVEMSPFMSANKIKKPILLIHGEEDNNSGTLTMQSDRFFNALKGHGALSRLVILPYE 879
Query: 874 SHGYAARESIMHVLWETDRWLQKYCVSNTADRSTDLKVS--KDDESKGAPHLQNKTVAAS 931
SHGY+ARESIMHVLWET RWL KYCVSNT+D D K++ SKG ++K VAAS
Sbjct: 880 SHGYSARESIMHVLWETGRWLHKYCVSNTSDAGEDHDTGTVKENISKGIADAESKVVAAS 939
Query: 932 GGGGTEA-DFEHDGCHLAPRSSL 953
GGG EA D EH+ H PR L
Sbjct: 940 GGGSKEACDLEHEESHSLPRKFL 962
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828471|ref|XP_002882118.1| serine-type peptidase [Arabidopsis lyrata subsp. lyrata] gi|297327957|gb|EFH58377.1| serine-type peptidase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1486 bits (3846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 720/910 (79%), Positives = 791/910 (86%), Gaps = 13/910 (1%)
Query: 49 TTAMT---ASRLHHLVPIHSVSSKNDG--TNGSLSSSNAVATEDEDNLEGRYRLPPPEIR 103
TT M+ A+RL L + +++ G +NGS+S+S +DE L YRLPPPEIR
Sbjct: 59 TTVMSSRAAARLRCLASVCPGGAEDGGGTSNGSVSASATATEDDELALGTGYRLPPPEIR 118
Query: 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYT 163
+IVDAPP+PALSFSP RDKILFLKRRALPPL +LARPEEKLAG+RIDG CNTRSRMSFYT
Sbjct: 119 DIVDAPPVPALSFSPHRDKILFLKRRALPPLADLARPEEKLAGVRIDGHCNTRSRMSFYT 178
Query: 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223
G+GIHQL PDG L E EI G PDG K+NFVTWS DGKHLAFSIR+D E+ +SSK VWV
Sbjct: 179 GLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVD-ENGNSSKPVVWV 237
Query: 224 ADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQS 283
ADV+TG ARPLF+S DIYLNAIF++FVW++NSTLLV TIP RGDPPKKPLVP GPK S
Sbjct: 238 ADVETGLARPLFKSQDIYLNAIFESFVWIDNSTLLVSTIPSSRGDPPKKPLVPSGPKTLS 297
Query: 284 NEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDE 343
NE + ++QVRTFQDLLKDEYD DLFDYYAT+QLVL SLDGTVKE+G PAVYTSLDPS D
Sbjct: 298 NETKTVVQVRTFQDLLKDEYDADLFDYYATSQLVLASLDGTVKEVGVPAVYTSLDPSTDH 357
Query: 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRS 403
KY+L+SS+HRPYSFIVPCGR P++V VWTTDG FVR+LCDLPLAEDIPIA NSVRKGMRS
Sbjct: 358 KYLLVSSLHRPYSFIVPCGRLPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSVRKGMRS 417
Query: 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW 463
INWR+DKPST+YWAETQDGGDAK+EV+PRDI+Y Q AEP+ GE PE+LHKLDLRYGGISW
Sbjct: 418 INWRADKPSTIYWAETQDGGDAKIEVSPRDIVYMQSAEPLAGEEPEVLHKLDLRYGGISW 477
Query: 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523
CDD+LALVYESWYKTRRTRTWVISPGS DV+PRILFDRSSEDVYSDPGS M+RRT+ GTY
Sbjct: 478 CDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRRTAAGTY 537
Query: 524 VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583
VIAKIKKENDEGTY+LLNG+GATP+GN+PFLDLFDINTG+KERIWESDKEKY+ET VALM
Sbjct: 538 VIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFETVVALM 597
Query: 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIK 643
SDQ EGDL + +LKILTSKESKTENTQY +Q WPD+K QIT+FPHPYPQLASLQKE+I+
Sbjct: 598 SDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASLQKEMIR 657
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703
YQRKDGVQL+ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF IGST
Sbjct: 658 YQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFAGIGST 717
Query: 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAV 763
S LLWLAR FAIL GPT PIIGEGDEEANDR+VEQLVA AEAAVEEVVRRGVAHPSKIAV
Sbjct: 718 SALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVAHPSKIAV 777
Query: 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823
GGHSYGAFMTANLLAHAPHLF CGIARSGAYNRTLTPFGFQNEDRTLWEAT+ YVEMSPF
Sbjct: 778 GGHSYGAFMTANLLAHAPHLFSCGIARSGAYNRTLTPFGFQNEDRTLWEATNVYVEMSPF 837
Query: 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883
MSANK+KKPILL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLV+LP ESHGY+ARESI
Sbjct: 838 MSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGYSARESI 897
Query: 884 MHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTEADFEHD 943
MHVLWETDRWLQKYCV NTAD T+ D+ K +K +GGG E F
Sbjct: 898 MHVLWETDRWLQKYCVPNTADADTN-----PDQFKEGSDSSDKVATGTGGGNPE--FGEH 950
Query: 944 GCHLAPRSSL 953
H R SL
Sbjct: 951 EVHSKLRRSL 960
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30690669|ref|NP_850473.1| prolyl oligopeptidase-like protein [Arabidopsis thaliana] gi|330255741|gb|AEC10835.1| prolyl oligopeptidase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1480 bits (3832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/910 (79%), Positives = 788/910 (86%), Gaps = 13/910 (1%)
Query: 49 TTAM---TASRLHHLVPIHSVSSKNDG--TNGSLSSSNAVATEDEDNLEGRYRLPPPEIR 103
TT M +ASRL L S +++ G +NGSLS+S +DE + YRLPPPEIR
Sbjct: 59 TTVMASRSASRLRSLASACSGGAEDGGGTSNGSLSASATATEDDELAIGTGYRLPPPEIR 118
Query: 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYT 163
+IVDAPP+PALSFSP RDKILFLKRRALPPL +LARPEEKLAG+RIDG CNTRSRMSFYT
Sbjct: 119 DIVDAPPVPALSFSPHRDKILFLKRRALPPLADLARPEEKLAGVRIDGYCNTRSRMSFYT 178
Query: 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223
G+GIHQL PDG L E EI G PDG K+NFVTWS DGKHLAFSIR+D E+ +SSK VWV
Sbjct: 179 GLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVD-ENGNSSKPVVWV 237
Query: 224 ADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQS 283
ADV+TG ARPLF S DI+LNAIF++FVW++NSTLLV TIP RG+PPKKPLVP GPK S
Sbjct: 238 ADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPSGPKTLS 297
Query: 284 NEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDE 343
NE + ++QVRTFQDLLKDEYD DLFDYYA++QLVL SLDGTVKE+G PAVYTSLDPS D
Sbjct: 298 NETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSLDPSTDH 357
Query: 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRS 403
KY+L+SS+HRPYSFIVPCGRFP++V VWTTDG FVR+LCDLPLAEDIPIA NSVRKGMRS
Sbjct: 358 KYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSVRKGMRS 417
Query: 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW 463
INWR+DKPSTLYWAETQDGGDAK+EV+PRDI+Y Q AEP+ GE PE+LHKLDLRYGGISW
Sbjct: 418 INWRADKPSTLYWAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLRYGGISW 477
Query: 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523
CDD+LALVYESWYKTRRTRTWVISPGS DV+PRILFDRSSEDVYSDPGS M+RRT GTY
Sbjct: 478 CDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRRTDAGTY 537
Query: 524 VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583
VIAKIKKENDEGTY+LLNG+GATP+GN+PFLDLFDINTG+KERIWESDKEKY+ET VALM
Sbjct: 538 VIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFETVVALM 597
Query: 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIK 643
SDQ EGDL + +LKILTSKESKTENTQY +Q WPD+K QIT+FPHPYPQLASLQKE+I+
Sbjct: 598 SDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASLQKEMIR 657
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703
YQRKDGVQL+ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF IGST
Sbjct: 658 YQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFAGIGST 717
Query: 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAV 763
S LLWLAR FAIL GPT PIIGEGDEEANDR+VEQLVA AEAAVEEVVRRGVA SKIAV
Sbjct: 718 SALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVADRSKIAV 777
Query: 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823
GGHSYGAFMTANLLAHAPHLF CGIARSGAYNRTLTPFGFQNEDRTLWEAT+ YVEMSPF
Sbjct: 778 GGHSYGAFMTANLLAHAPHLFACGIARSGAYNRTLTPFGFQNEDRTLWEATNVYVEMSPF 837
Query: 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883
MSANK+KKPILL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLV+LP ESHGY+ARESI
Sbjct: 838 MSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGYSARESI 897
Query: 884 MHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTEADFEHD 943
MHVLWETDRWLQKYCV NT+D T D+SK +K +GGG E F
Sbjct: 898 MHVLWETDRWLQKYCVPNTSDADT-----SPDQSKEGSDSADKVSTGTGGGNPE--FGEH 950
Query: 944 GCHLAPRSSL 953
H R SL
Sbjct: 951 EVHSKLRRSL 960
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|332278170|sp|Q8VZF3.2|CGEP_ARATH RecName: Full=Probable glutamyl endopeptidase, chloroplastic; Flags: Precursor | Back alignment and taxonomy information |
|---|
Score = 1473 bits (3813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 718/910 (78%), Positives = 787/910 (86%), Gaps = 14/910 (1%)
Query: 49 TTAM---TASRLHHLVPIHSVSSKNDG--TNGSLSSSNAVATEDEDNLEGRYRLPPPEIR 103
TT M +ASRL L S +++ G +NGSLS+S +DE + YRLPPPEIR
Sbjct: 59 TTVMASRSASRLRSLASACSGGAEDGGGTSNGSLSASATATEDDELAIGTGYRLPPPEIR 118
Query: 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYT 163
+IVDAPP+PALSFSP RDKILFLKRRALPPL +LARPEEKLAG+RIDG CNTRSRMSFYT
Sbjct: 119 DIVDAPPVPALSFSPHRDKILFLKRRALPPLADLARPEEKLAGVRIDGYCNTRSRMSFYT 178
Query: 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223
G+GIHQL PDG L E EI G PDG K+NFVTWS DGKHLAFSIR+D E+ +SSK VWV
Sbjct: 179 GLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVD-ENGNSSKPVVWV 237
Query: 224 ADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQS 283
ADV+TG ARPLF S DI+LNAIF++FVW++NSTLLV TIP RG+PPKKPLVP GPK S
Sbjct: 238 ADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPSGPKTLS 297
Query: 284 NEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDE 343
NE + ++QVRTFQDLLKDEYD DLFDYYA++QLVL SLDGTVKE+G PAVYTSLDPS D
Sbjct: 298 NETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSLDPSTDH 357
Query: 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRS 403
KY+L+SS+HRPYSFIVPCGRFP++V VWTTDG FVR+LCDLPLAEDIPIA NSVRKGMRS
Sbjct: 358 KYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSVRKGMRS 417
Query: 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW 463
INWR+DKPSTL WAETQDGGDAK+EV+PRDI+Y Q AEP+ GE PE+LHKLDLRYGGISW
Sbjct: 418 INWRADKPSTL-WAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLRYGGISW 476
Query: 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523
CDD+LALVYESWYKTRRTRTWVISPGS DV+PRILFDRSSEDVYSDPGS M+RRT GTY
Sbjct: 477 CDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRRTDAGTY 536
Query: 524 VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583
VIAKIKKENDEGTY+LLNG+GATP+GN+PFLDLFDINTG+KERIWESDKEKY+ET VALM
Sbjct: 537 VIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFETVVALM 596
Query: 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIK 643
SDQ EGDL + +LKILTSKESKTENTQY +Q WPD+K QIT+FPHPYPQLASLQKE+I+
Sbjct: 597 SDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASLQKEMIR 656
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703
YQRKDGVQL+ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF IGST
Sbjct: 657 YQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFAGIGST 716
Query: 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAV 763
S LLWLAR FAIL GPT PIIGEGDEEANDR+VEQLVA AEAAVEEVVRRGVA SKIAV
Sbjct: 717 SALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVADRSKIAV 776
Query: 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823
GGHSYGAFMTANLLAHAPHLF CGIARSGAYNRTLTPFGFQNEDRTLWEAT+ YVEMSPF
Sbjct: 777 GGHSYGAFMTANLLAHAPHLFACGIARSGAYNRTLTPFGFQNEDRTLWEATNVYVEMSPF 836
Query: 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883
MSANK+KKPILL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLV+LP ESHGY+ARESI
Sbjct: 837 MSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGYSARESI 896
Query: 884 MHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTEADFEHD 943
MHVLWETDRWLQKYCV NT+D T D+SK +K +GGG E F
Sbjct: 897 MHVLWETDRWLQKYCVPNTSDADT-----SPDQSKEGSDSADKVSTGTGGGNPE--FGEH 949
Query: 944 GCHLAPRSSL 953
H R SL
Sbjct: 950 EVHSKLRRSL 959
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18086370|gb|AAL57645.1| At2g47390/T8I13.23 [Arabidopsis thaliana] gi|27363294|gb|AAO11566.1| At2g47390/T8I13.23 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1469 bits (3802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 717/910 (78%), Positives = 786/910 (86%), Gaps = 14/910 (1%)
Query: 49 TTAM---TASRLHHLVPIHSVSSKNDG--TNGSLSSSNAVATEDEDNLEGRYRLPPPEIR 103
TT M +ASRL L S +++ G +NGSLS+S +DE + YRLPPPEIR
Sbjct: 59 TTVMASRSASRLRSLASACSGGAEDGGGTSNGSLSASATATEDDELAIGTGYRLPPPEIR 118
Query: 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYT 163
+IVDAPP+PALSFSP RDKILFLKRRALPPL +LARPEEKLAG+RIDG CNTRSRMSFYT
Sbjct: 119 DIVDAPPVPALSFSPHRDKILFLKRRALPPLADLARPEEKLAGVRIDGYCNTRSRMSFYT 178
Query: 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223
G+GIHQL PDG L E EI G PDG K+NFVTWS DGKHLAFSIR+D E+ +SSK VWV
Sbjct: 179 GLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVD-ENGNSSKPVVWV 237
Query: 224 ADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQS 283
ADV+TG ARPLF S DI+LNAIF++FVW++NSTLLV TIP RG+PPKKPLVP GPK S
Sbjct: 238 ADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPSGPKTLS 297
Query: 284 NEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDE 343
NE + ++QVRTFQDLLKDEYD DLFDYYA++QLVL SLDGTVKE+G PAVYTSLDPS D
Sbjct: 298 NETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSLDPSTDH 357
Query: 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRS 403
KY+L+SS+HRPYSFIVPCGRFP++V VWTTDG FVR+LCDLPLAEDIPIA NSVRKGMRS
Sbjct: 358 KYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSVRKGMRS 417
Query: 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW 463
INWR+DKPSTL WAETQDGGDAK+EV+PRDI+Y Q AEP+ GE PE+LHKLDLRYGGISW
Sbjct: 418 INWRADKPSTL-WAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLRYGGISW 476
Query: 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523
CDD+LALVYESWYKTRRTRTWVISPGS DV+PRILFDRSSEDVYSDPGS M+RRT GTY
Sbjct: 477 CDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRRTDAGTY 536
Query: 524 VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583
VIAKIKKENDEGTY+LLNG+GATP+GN+PFLDLFDINTG+KERIWESDKEKY+ET VALM
Sbjct: 537 VIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFETVVALM 596
Query: 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIK 643
SDQ EGDL + +LKILTSKESKTENTQY +Q WPD+K QIT+FPHPYPQLASLQKE+I+
Sbjct: 597 SDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASLQKEMIR 656
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703
YQRKDGVQL+ATLYLPPGYDPSKDGPLP LFWSYPGEFKSKDAAGQVRGSPNEF IGST
Sbjct: 657 YQRKDGVQLTATLYLPPGYDPSKDGPLPYLFWSYPGEFKSKDAAGQVRGSPNEFAGIGST 716
Query: 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAV 763
S LLWLAR FAIL GPT PIIGEGDEEANDR+VEQLVA AEAAVEEVVRRGVA SKIAV
Sbjct: 717 SALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVADRSKIAV 776
Query: 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823
GGHSYGAFMTANLLAHAPHLF CGIARSGAYNRTLTPFGFQNEDRTLWEAT+ YVEMSPF
Sbjct: 777 GGHSYGAFMTANLLAHAPHLFACGIARSGAYNRTLTPFGFQNEDRTLWEATNVYVEMSPF 836
Query: 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883
MSANK+KKPILL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLV+LP ESHGY+ARESI
Sbjct: 837 MSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGYSARESI 896
Query: 884 MHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTEADFEHD 943
MHVLWETDRWLQKYCV NT+D T D+SK +K +GGG E F
Sbjct: 897 MHVLWETDRWLQKYCVPNTSDADT-----SPDQSKEGSDSADKVSTGTGGGNPE--FGEH 949
Query: 944 GCHLAPRSSL 953
H R SL
Sbjct: 950 EVHSKLRRSL 959
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 953 | ||||||
| UNIPROTKB|Q8EHB8 | 801 | SO_1310 "Serine peptidase S9 f | 0.444 | 0.529 | 0.391 | 1.7e-80 | |
| TIGR_CMR|SO_1310 | 801 | SO_1310 "conserved hypothetica | 0.444 | 0.529 | 0.391 | 1.7e-80 | |
| UNIPROTKB|Q47UC7 | 693 | CPS_4957 "Putative uncharacter | 0.277 | 0.380 | 0.236 | 4.2e-08 | |
| TIGR_CMR|CPS_4957 | 693 | CPS_4957 "conserved hypothetic | 0.277 | 0.380 | 0.236 | 4.2e-08 | |
| TIGR_CMR|SO_4618 | 645 | SO_4618 "prolyl oligopeptidase | 0.423 | 0.626 | 0.217 | 5.1e-08 | |
| WB|WBGene00001059 | 740 | dpf-6 [Caenorhabditis elegans | 0.431 | 0.555 | 0.215 | 5.3e-08 | |
| TIGR_CMR|SO_4252 | 662 | SO_4252 "prolyl oligopeptidase | 0.239 | 0.344 | 0.247 | 0.00023 |
| UNIPROTKB|Q8EHB8 SO_1310 "Serine peptidase S9 family" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 783 (280.7 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
Identities = 172/439 (39%), Positives = 248/439 (56%)
Query: 457 RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMR 516
R I W ++ LAL+ E K ++ R ++ + + L +R+ D Y D G +
Sbjct: 372 RITDIDWAENHLALITERNSKAQQIRLSSLNTRLGESSLHTLNERNLRDKYQDLGL-FAK 430
Query: 517 RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYY 576
G + ++ + + T ++ G GATP+G+ PFL + T +W+S +
Sbjct: 431 HYYPGKGQVVSLQ-QGAKTTGLIHYGQGATPQGDKPFLKRTSLITSESSLLWQSASNRLE 489
Query: 577 ETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLAS 636
L L+ L+++ ++ES TE+ + + K+S + + P
Sbjct: 490 SVRYVLN---------LDPLQLIINRESPTESPSLVLLN-AAKESV-LYEQPDGLSAYLG 538
Query: 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNE 696
+QK+LI ++R DGV LS TLYLP Y + G LP L W+YP EF + AGQ+ S N+
Sbjct: 539 MQKQLITFKRADGVPLSGTLYLPANYT-KEQGTLPVLMWAYPREFNDPEVAGQISFSANQ 597
Query: 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFXXXXXXXXXXXXXXXXRRGVA 756
+P I + +A GFA+ + PII +GD+E+ND F G+A
Sbjct: 598 YPTISPRGPIPLVAEGFAVFDKVSMPIIAQGDKESNDTFREQLTANAQAAIDTLVDLGIA 657
Query: 757 HPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATST 816
+IAVGGHSYGAFM ANLLAH LF GIARSGAYNR+LTPFGFQNE+RT W+A
Sbjct: 658 DRKQIAVGGHSYGAFMVANLLAHTD-LFYAGIARSGAYNRSLTPFGFQNEERTYWQANDI 716
Query: 817 YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876
Y +MSPF A+K+K P+LL+HGE D NSGT +QS+R F+A++G G RLVILPFE H
Sbjct: 717 YQQMSPFNYADKIKSPLLLIHGEMDQNSGTFPLQSERLFDAIQGLGGKARLVILPFEGHS 776
Query: 877 YAARESIMHVLWETDRWLQ 895
Y A+ES+ H+L+E ++L+
Sbjct: 777 YTAKESLEHLLFEQSQFLK 795
|
|
| TIGR_CMR|SO_1310 SO_1310 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 783 (280.7 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
Identities = 172/439 (39%), Positives = 248/439 (56%)
Query: 457 RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMR 516
R I W ++ LAL+ E K ++ R ++ + + L +R+ D Y D G +
Sbjct: 372 RITDIDWAENHLALITERNSKAQQIRLSSLNTRLGESSLHTLNERNLRDKYQDLGL-FAK 430
Query: 517 RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYY 576
G + ++ + + T ++ G GATP+G+ PFL + T +W+S +
Sbjct: 431 HYYPGKGQVVSLQ-QGAKTTGLIHYGQGATPQGDKPFLKRTSLITSESSLLWQSASNRLE 489
Query: 577 ETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLAS 636
L L+ L+++ ++ES TE+ + + K+S + + P
Sbjct: 490 SVRYVLN---------LDPLQLIINRESPTESPSLVLLN-AAKESV-LYEQPDGLSAYLG 538
Query: 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNE 696
+QK+LI ++R DGV LS TLYLP Y + G LP L W+YP EF + AGQ+ S N+
Sbjct: 539 MQKQLITFKRADGVPLSGTLYLPANYT-KEQGTLPVLMWAYPREFNDPEVAGQISFSANQ 597
Query: 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFXXXXXXXXXXXXXXXXRRGVA 756
+P I + +A GFA+ + PII +GD+E+ND F G+A
Sbjct: 598 YPTISPRGPIPLVAEGFAVFDKVSMPIIAQGDKESNDTFREQLTANAQAAIDTLVDLGIA 657
Query: 757 HPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATST 816
+IAVGGHSYGAFM ANLLAH LF GIARSGAYNR+LTPFGFQNE+RT W+A
Sbjct: 658 DRKQIAVGGHSYGAFMVANLLAHTD-LFYAGIARSGAYNRSLTPFGFQNEERTYWQANDI 716
Query: 817 YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876
Y +MSPF A+K+K P+LL+HGE D NSGT +QS+R F+A++G G RLVILPFE H
Sbjct: 717 YQQMSPFNYADKIKSPLLLIHGEMDQNSGTFPLQSERLFDAIQGLGGKARLVILPFEGHS 776
Query: 877 YAARESIMHVLWETDRWLQ 895
Y A+ES+ H+L+E ++L+
Sbjct: 777 YTAKESLEHLLFEQSQFLK 795
|
|
| UNIPROTKB|Q47UC7 CPS_4957 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 155 (59.6 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 69/292 (23%), Positives = 113/292 (38%)
Query: 619 KKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYP 678
KK ++TD +A ++E + + +DGV++ L P Y K+G L S
Sbjct: 389 KKQTRLTDSNVWLNDIALAKQENLTIKARDGVEIGGVLVYPLDY---KNGQRYPLIMSVH 445
Query: 679 GEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA----NDR 734
G +S D G + + R G + A+G+A+ G+G + + ND
Sbjct: 446 GGPESHDKDGWMTA----YSRPGQLAA----AQGYAVFYPNYRGSTGKGVDYSKLGQND- 496
Query: 735 FXXXXXXXXXXXXXXXXRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794
+ G+ + K+ + G SYG + +A F + G
Sbjct: 497 YAGKEFDDLVDLKNHLVNIGLVNEKKVGITGGSYGGYASAWGATKLTKHFAASVMFVGIS 556
Query: 795 NRTLTPFG---FQNEDRTL------WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG 845
N+ L+ FG NE + W+ Y+E SP + + P+L++HG+ D
Sbjct: 557 NQ-LSKFGTTDISNEMHLVHARSYPWDKWQWYLERSPIYWVEQSETPLLIMHGKADPR-- 613
Query: 846 TLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
QS + +K HG RLV P E HG + RW+ Y
Sbjct: 614 VHPAQSMEMYRYMKVHGKTVRLVYYPGEGHGNKRAAAKYDYSLRLMRWMDNY 665
|
|
| TIGR_CMR|CPS_4957 CPS_4957 "conserved hypothetical protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 155 (59.6 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 69/292 (23%), Positives = 113/292 (38%)
Query: 619 KKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYP 678
KK ++TD +A ++E + + +DGV++ L P Y K+G L S
Sbjct: 389 KKQTRLTDSNVWLNDIALAKQENLTIKARDGVEIGGVLVYPLDY---KNGQRYPLIMSVH 445
Query: 679 GEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA----NDR 734
G +S D G + + R G + A+G+A+ G+G + + ND
Sbjct: 446 GGPESHDKDGWMTA----YSRPGQLAA----AQGYAVFYPNYRGSTGKGVDYSKLGQND- 496
Query: 735 FXXXXXXXXXXXXXXXXRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794
+ G+ + K+ + G SYG + +A F + G
Sbjct: 497 YAGKEFDDLVDLKNHLVNIGLVNEKKVGITGGSYGGYASAWGATKLTKHFAASVMFVGIS 556
Query: 795 NRTLTPFG---FQNEDRTL------WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG 845
N+ L+ FG NE + W+ Y+E SP + + P+L++HG+ D
Sbjct: 557 NQ-LSKFGTTDISNEMHLVHARSYPWDKWQWYLERSPIYWVEQSETPLLIMHGKADPR-- 613
Query: 846 TLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
QS + +K HG RLV P E HG + RW+ Y
Sbjct: 614 VHPAQSMEMYRYMKVHGKTVRLVYYPGEGHGNKRAAAKYDYSLRLMRWMDNY 665
|
|
| TIGR_CMR|SO_4618 SO_4618 "prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 100/460 (21%), Positives = 177/460 (38%)
Query: 465 DDSLALVYESWYKTRRTRT-WVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523
DD+ +YE + +R W S+D + FD +DP +R G
Sbjct: 214 DDTEYRIYEQPEQKSESRLLWSFKAFSEDSIWPLGFD-------ADPNILYVRAYHKGYE 266
Query: 524 VIAKIKKENDEGTYILLNGNGATP-EGNIPFLDL----FDINTGSKER--IWESDKEKYY 576
I K+ + + T L+ N T EG++ + L I+ G E W+ +
Sbjct: 267 AIFKVNLTDPKLTKELVYANEDTDVEGDLIYSQLKKKVIGISEGDGEEYTFWDPEYAGLQ 326
Query: 577 ETTVALMSDQTE--GDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQL 634
A++ + N+ + + S T+ YY +K I + Y QL
Sbjct: 327 NGLKAVLPNAHNYITQFSANERRYIVYSTSSTQPGTYYFGDRDEKVLFPIAE---RYSQL 383
Query: 635 ASLQ---KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR 691
++ Q + + Y+ +D +++ A L +P G+ K LP + + + G S D+
Sbjct: 384 STEQLADTQYLSYEARDKLKIDAYLTVPKGF---KAKHLPTIIFPHGGPI-SYDS----- 434
Query: 692 GSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE--EANDR-FXXXXXXXXXXXXX 748
N+F + RG+A+ G G E +A + +
Sbjct: 435 ---NDFDYWAQ----FFANRGYAVFRMNFRGSAGYGYEFMKAGLKSWGLEMQNDVEDGTR 487
Query: 749 XXXRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY---NRTLTPFGFQN 805
+G++ P +I + G SYG + A P L+ C ++ +G N + F N
Sbjct: 488 YLINQGISDPQRICIVGASYGGYAALMGAAMTPDLYRCAVSVAGVTDVANLVRSSRRFTN 547
Query: 806 ED---RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDR-FFNALKGH 861
+ + + + E SP A+K+ P+LL+HG++D + +Q R F+ LK
Sbjct: 548 YEVVKEQIGDDFNVLYERSPISKADKITIPVLLLHGDKDR---VVKVQHSREMFDELKSR 604
Query: 862 GALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSN 901
+ L H Y + H L T + L K+ N
Sbjct: 605 KKNVEYIELENGGH-YLSNND--HRL-TTFKALDKFLADN 640
|
|
| WB|WBGene00001059 dpf-6 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 162 (62.1 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 99/460 (21%), Positives = 177/460 (38%)
Query: 477 KTRRTRTWV----ISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK-E 531
+T TWV I K + I FD+S+ +Y G + G V+ + +
Sbjct: 212 RTTEQNTWVEYLRIQHDDKAITMPITFDKSNNFMYWIMGDG----SDLGNLVVFPFEDPQ 267
Query: 532 NDEGTYILLN---GNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTE 588
E Y GN + L + ++ K ++ ++ E + E L++ +
Sbjct: 268 QKEILYTAQRAQIGNVLIHPTDKTLLAVTEVY--HKPELFVAN-ETFMEDLQYLVNMKPS 324
Query: 589 GDLYLNQLKI-----LTSKESKTENTQYYI-QSWPDKKSCQITDFPHPYPQLASLQKEL- 641
G + + + I L + S E Y+ + W K ++ P + +L K++
Sbjct: 325 GSMNIVSMSIDMSTWLVTYSSSDEPYDIYLYRRW--NKKAELFMSTRPELKKYTLNKQIG 382
Query: 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYP--GEFKS--KDAAGQVRGSPNEF 697
++ +D + + A L LPP K +P Y G + + V G P
Sbjct: 383 FDFRARDEMTIQAYLSLPPQAPLLKSSQVPDGDRPYANLGMIPAVPQKMIVLVHGGPKAR 442
Query: 698 PRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDE---EANDRFXXXXXXXXXXXXXXXXRR 753
G + + WL RG+++L G G N + +
Sbjct: 443 DHYGFSPMNAWLTNRGYSVLQVNFRGSTGFGKRLTNAGNGEWGRKMHFDILDAVEFAVSK 502
Query: 754 GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-----RTLTPF--GFQNE 806
G+A+ S++AV G SYG + T L P F CG+ G N + + P+ GF+ +
Sbjct: 503 GIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLISLVQAIPPYWLGFRKD 562
Query: 807 -------DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859
D + E + SP A+++ KPI+++ G D +SD+F AL+
Sbjct: 563 LIKMVGADISDEEGRQSLQSRSPLFFADRVTKPIMIIQGANDPR--VKQAESDQFVAALE 620
Query: 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899
++ P E HG ++ M + +LQ+ C+
Sbjct: 621 KKHIPVTYLLYPDEGHGVRKPQNSMEQHGHIETFLQQ-CL 659
|
|
| TIGR_CMR|SO_4252 SO_4252 "prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 63/255 (24%), Positives = 102/255 (40%)
Query: 633 QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRG 692
Q+A ++ I + +DG ++ L LP G + +K+ LP + + G +D G
Sbjct: 402 QMAEVKP--ISFTNRDGQKIHGYLTLPYGKE-AKN--LPLVVNPHGGPHGIRDWWGF--D 454
Query: 693 SPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN-DRFXXXXXXXXXXXXXXXX 751
N+ +VL RG GG GE E+A ++
Sbjct: 455 PQNQLLAQNGMAVLQVNFRGS---GG-----YGERFEQAGYQKWGSDIQHDIIDATQYVI 506
Query: 752 RRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL---------TPFG 802
+G +I + G S+G + AP +F C + +G Y+ L T G
Sbjct: 507 GQGFVDKERICIAGGSFGGYSALQSAVLAPDMFKCAVGFAGVYDLELMFDEGDVARTRSG 566
Query: 803 FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
L + +T MSP + KLK +LLVHG ED + ++S ALK H
Sbjct: 567 TSYLKDVLGQDKATLKAMSPSENVAKLKANLLLVHGGEDERAPIEQLES--LEKALKNHN 624
Query: 863 ALCRLVILPFESHGY 877
+ +++ E HG+
Sbjct: 625 YPYQKLVMDNEGHGF 639
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q10MJ1 | CGEP_ORYSJ | 3, ., 4, ., 2, 1, ., - | 0.7871 | 0.9034 | 0.9179 | yes | no |
| Q8VZF3 | CGEP_ARATH | 3, ., 4, ., 2, 1, ., - | 0.7890 | 0.9401 | 0.9333 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 953 | |||
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 1e-44 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 3e-21 | |
| pfam12697 | 187 | pfam12697, Abhydrolase_6, Alpha/beta hydrolase fam | 1e-07 | |
| COG0412 | 236 | COG0412, COG0412, Dienelactone hydrolase and relat | 3e-07 | |
| pfam12695 | 145 | pfam12695, Abhydrolase_5, Alpha/beta hydrolase fam | 6e-06 | |
| COG0400 | 207 | COG0400, COG0400, Predicted esterase [General func | 2e-05 | |
| COG4099 | 387 | COG4099, COG4099, Predicted peptidase [General fun | 9e-05 | |
| pfam01738 | 215 | pfam01738, DLH, Dienelactone hydrolase family | 7e-04 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 1e-44
Identities = 130/674 (19%), Positives = 210/674 (31%), Gaps = 115/674 (17%)
Query: 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPA 332
L + S + + T D LK Y + VS TV+ +
Sbjct: 11 ALARVSDPRVSPPGGRLAYILTGLDFLKPLY----------KSSLWVSDGKTVRLLTFGG 60
Query: 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392
+ L SPD + S TDG V +L + + I
Sbjct: 61 GVSELRWSPDGSVLAFVS----------------------TDGGRVAQLYLVDVGGLITK 98
Query: 393 AFNSVRKGMRSINWRSDKPSTLYW-AETQDGGDAKVEVTPRDIIYTQQAEP--------V 443
V W D + AE D + + V
Sbjct: 99 TAFGVSD----ARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVV 154
Query: 444 QGEGPEILHKLD-LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502
E I L L + D + P ++ I +
Sbjct: 155 DIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDD-------ADPWVTNLYVLIEGNGE 207
Query: 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGN--IPFLDLFDIN 560
E + GS IA + E+D G E L D
Sbjct: 208 LESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDT 267
Query: 561 TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQL------------------------ 596
G+ D + G L ++
Sbjct: 268 RGAWAVEGGLDGDGLLFIA-----TDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDVDG 322
Query: 597 -KILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSAT 655
K+ + S TE + Y+ +++ + ++ + E + Y+ DG +
Sbjct: 323 RKLALAYSSPTEPPEIYLYD-RGEEAKLTSSNNSGLKKVKLAEPEPVTYKSNDGETIHGW 381
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
LY PPG+DP K PL + + + G + QV S N + + + G+A+
Sbjct: 382 LYKPPGFDPRKKYPL--IVYIHGGP------SAQVGYSFNPEIQ-------VLASAGYAV 426
Query: 716 LGGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFM 772
L G G E A + + AAV+ +V+ + P +I + G SYG +M
Sbjct: 427 LAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYM 486
Query: 773 TANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEAT--------STYVEMSPFM 824
T P F +A +G + L R E Y + SP
Sbjct: 487 TLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPEDREKYEDRSPIF 545
Query: 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIM 884
A+ +K P+LL+HGEED+ Q+++ +ALK G LV+ P E HG++ E+ +
Sbjct: 546 YADNIKTPLLLIHGEEDDRVP--IEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRV 603
Query: 885 HVLWETDRWLQKYC 898
VL E W +++
Sbjct: 604 KVLKEILDWFKRHL 617
|
Length = 620 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 3e-21
Identities = 49/206 (23%), Positives = 77/206 (37%), Gaps = 21/206 (10%)
Query: 707 LWLARGF--AILGGPTTPIIGEGDEEANDRF-----VEQLVACAEAAVEEVVRRGVAHPS 759
L RG+ A+ G + G +A + +A AE + + G P
Sbjct: 9 LLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQ----GYVDPD 64
Query: 760 KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG-----AYNRTLTPFGFQ-NEDRTLWEA 813
++A+ G SYG ++T L P LF +A Y +PF + E W+
Sbjct: 65 RLAIWGGSYGGYLTGAALNQRPDLFKAAVAVVPVVDWLTYMSDTSPFTERYMEWGNPWDN 124
Query: 814 TSTYVEMSP--FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP 871
Y +SP K P+LL+HG D+ ++ + AL+ G L+I P
Sbjct: 125 EEGYRYLSPYSPYDNVKAYPPLLLIHGLHDDR--VPPAEALKLVAALQAKGKNVLLLIFP 182
Query: 872 FESHGYAARESIMHVLWETDRWLQKY 897
E HG + +L K
Sbjct: 183 DEGHGGGKPRNKREEYARELAFLLKV 208
|
Length = 212 |
| >gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 35/169 (20%), Positives = 56/169 (33%), Gaps = 17/169 (10%)
Query: 709 LARGFAILGGPTTPIIGE-GDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHS 767
LA G+ +L P P G+ +E A A ++ + + + GHS
Sbjct: 21 LAAGYRVLA-PDLPGHGDSDGPPRTPYSLEDDAADLAALLDALGLG------PVVLVGHS 73
Query: 768 YGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSA- 826
G + A P + S + L + + A
Sbjct: 74 LGGAVALAAAARRPERVAGLVLISPPLRD--LEELLAADAAALLALLRAALLDADLREAL 131
Query: 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875
+L P+L++HGE+D + R AL G LV+LP H
Sbjct: 132 ARLTVPVLVIHGEDDPLVPPEAAR--RLAEALPG----AELVVLPGAGH 174
|
This family contains alpha/beta hydrolase enzymes of diverse specificity. Length = 187 |
| >gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 43/190 (22%), Positives = 64/190 (33%), Gaps = 39/190 (20%)
Query: 708 WLA-RGFAIL-------GGPTTPIIGEGDEEANDRF----VEQLVACAEAAVEEVVRRGV 755
LA G+ +L G T I E E +++A +AA++ + R+
Sbjct: 49 RLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQ 108
Query: 756 AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATS 815
P +I V G G + AP + + A+ +G D T
Sbjct: 109 VDPKRIGVVGFCMGGGLALLAATRAP-----EVKAAVAF------YGGLIADDTA----- 152
Query: 816 TYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875
A K+K P+LL ED D AL+ G L I P H
Sbjct: 153 ---------DAPKIKVPVLLHLAGED--PYIPAADVDALAAALEDAGVKVDLEIYPGAGH 201
Query: 876 GYAARESIMH 885
G+A + H
Sbjct: 202 GFANDRADYH 211
|
Length = 236 |
| >gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 6e-06
Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 30/128 (23%)
Query: 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGF 803
E V+ P +I + GHS G + L A
Sbjct: 43 APDAEAVLADAPLDPERIVLVGHSLGGGVALLLAA------------------------- 77
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA 863
++ + KL P+L++HG D +++ AL G
Sbjct: 78 RDPRVKAAVVLAAGDPPDALDDLAKLTVPVLIIHGTRDG--VVPPEEAEALAAALPGP-- 133
Query: 864 LCRLVILP 871
LV++
Sbjct: 134 -AELVVIE 140
|
This family contains a diverse range of alpha/beta hydrolase enzymes. Length = 145 |
| >gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 24/98 (24%), Positives = 32/98 (32%), Gaps = 24/98 (24%)
Query: 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGF 803
+EE+ S+I + G S GA + +L P LF I SG P
Sbjct: 84 AEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGML-----PLEP 138
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEED 841
+ + PILL HG ED
Sbjct: 139 EL-------------------LPDLAGTPILLSHGTED 157
|
Length = 207 |
| >gnl|CDD|226584 COG4099, COG4099, Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 9e-05
Identities = 36/155 (23%), Positives = 54/155 (34%), Gaps = 16/155 (10%)
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703
Y G +L LY P Y P K P + + + AGQ GS N+
Sbjct: 166 YDESTGNELKYRLYTPKDYAPDKKY-YPLVLFLH--------GAGQ-GGSDNDKVLSSGI 215
Query: 704 SVLLWLAR--GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKI 761
+ W +L PI + +E+ L+ + +E + S+I
Sbjct: 216 GAIAWAGPEDQCFVLAPQYNPIFADSEEKTLLY----LIEKIDLILEVLASTYNIDRSRI 271
Query: 762 AVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796
V G S G F T L P F + +G +R
Sbjct: 272 YVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR 306
|
Length = 387 |
| >gnl|CDD|216672 pfam01738, DLH, Dienelactone hydrolase family | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 31/156 (19%), Positives = 49/156 (31%), Gaps = 42/156 (26%)
Query: 735 FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG------I 788
+E +V AA+ + + K+ V G FC G +
Sbjct: 74 RMEAVVDDLLAAINYLRGQPYVDTKKVGVVG------------------FCLGGRLAFLL 115
Query: 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLT 848
A + ++ +G E P A +K PIL GEED +
Sbjct: 116 AARNGVDAAVSFYGTGPE--------------PPLDEAPAIKAPILAHFGEEDP---FVP 158
Query: 849 MQS-DRFFNALKGHGALCRLVILPFESHGYAARESI 883
++ D AL+ L + P H +AA
Sbjct: 159 AEARDLLEEALRAANVDHELHVYPGAGHAFAADGRE 194
|
Length = 215 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 953 | |||
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 100.0 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 99.96 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 99.95 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.89 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 99.89 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.88 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.88 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.88 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.88 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.88 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.87 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.87 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 99.87 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.86 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.86 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.86 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.85 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.83 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.83 | |
| PRK10566 | 249 | esterase; Provisional | 99.83 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.82 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.81 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.8 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.8 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.8 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.8 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.79 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.78 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.78 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.78 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.76 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 99.76 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.76 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.76 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.76 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.75 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.73 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.73 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.72 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.7 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.7 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.69 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.67 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.67 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.67 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.67 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.65 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.64 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.64 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.64 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.62 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.61 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.61 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.59 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.58 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.58 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.56 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.56 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.56 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.54 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.54 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.54 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.54 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.53 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.52 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.51 | |
| PLN02511 | 388 | hydrolase | 99.51 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.5 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.5 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.5 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.5 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.49 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.48 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.47 | |
| PLN00021 | 313 | chlorophyllase | 99.47 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.47 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.46 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.46 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 99.46 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.45 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.45 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.44 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.44 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.44 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.43 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.43 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.42 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.42 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.42 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.41 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.41 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.4 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.4 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.4 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.39 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.39 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.38 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.38 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.37 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.37 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.35 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.35 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.34 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.33 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.33 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.33 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.32 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.32 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.32 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.32 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 99.31 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.31 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.3 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.3 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.3 | |
| PLN02578 | 354 | hydrolase | 99.3 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.3 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 99.29 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 99.29 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.28 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 99.28 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.28 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.28 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.27 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.27 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 99.26 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.26 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.26 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.24 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.24 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.24 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.23 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.22 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.22 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.22 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.22 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 99.21 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.2 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.19 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.19 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.17 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.16 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.15 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.15 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.15 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 99.15 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 99.13 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 99.12 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.12 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 99.11 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.11 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.1 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.1 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 99.1 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.1 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.08 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 99.08 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 99.08 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.08 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.07 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 99.06 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.06 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 99.04 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.04 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.02 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.01 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.01 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 99.0 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.98 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 98.98 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 98.98 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 98.96 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.96 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.95 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.95 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.95 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 98.94 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.94 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 98.93 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.93 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.91 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.9 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.89 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 98.89 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 98.88 | |
| PTZ00421 | 493 | coronin; Provisional | 98.87 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.87 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 98.85 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.84 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 98.83 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.83 | |
| PTZ00421 | 493 | coronin; Provisional | 98.82 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.8 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 98.8 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.8 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 98.8 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 98.79 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.78 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.77 | |
| PTZ00420 | 568 | coronin; Provisional | 98.75 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 98.74 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 98.73 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.73 | |
| PTZ00420 | 568 | coronin; Provisional | 98.73 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.73 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 98.71 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.7 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.7 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.7 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.68 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.68 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.67 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.66 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.66 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 98.63 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 98.62 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 98.62 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.61 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.57 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 98.57 | |
| PRK10115 | 686 | protease 2; Provisional | 98.57 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.56 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.55 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 98.54 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 98.49 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.49 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 98.48 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.45 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 98.44 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.42 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.4 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.39 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 98.38 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.38 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.38 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 98.37 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.36 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.35 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.34 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.34 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 98.33 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 98.33 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.32 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.32 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 98.32 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.32 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 98.32 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 98.29 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.29 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.27 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 98.27 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 98.25 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 98.24 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 98.24 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.24 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 98.23 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.22 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 98.2 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 98.19 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 98.18 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.18 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 98.16 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 98.15 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.15 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 98.15 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 98.14 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 98.13 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 98.13 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.12 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.1 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.09 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.08 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 98.05 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.04 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 98.04 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 98.03 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 98.02 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.0 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.0 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 98.0 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 97.99 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.98 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.98 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 97.98 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 97.97 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 97.95 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 97.93 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 97.92 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.92 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 97.9 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.9 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.88 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.86 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.86 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.83 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 97.83 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 97.83 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.8 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 97.78 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.76 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.75 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 97.74 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 97.74 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.73 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 97.73 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.73 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.72 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 97.71 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 97.71 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 97.65 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.65 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 97.64 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.63 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 97.63 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 97.63 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.61 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 97.61 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.61 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 97.6 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 97.59 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 97.59 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 97.59 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 97.57 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.57 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 97.56 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 97.55 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 97.55 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 97.54 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 97.53 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 97.52 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 97.5 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 97.47 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 97.46 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 97.45 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 97.44 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 97.44 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.44 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.42 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 97.42 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 97.39 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.38 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 97.38 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 97.36 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 97.29 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 97.26 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 97.26 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 97.24 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.23 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 97.22 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 97.19 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.18 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 97.18 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 97.16 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 97.13 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 97.12 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 97.06 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.05 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.05 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 97.02 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 96.98 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 96.97 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 96.97 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 96.96 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 96.95 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 96.95 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 96.95 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 96.93 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.9 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 96.88 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 96.87 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 96.86 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 96.86 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 96.83 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 96.82 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 96.76 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 96.74 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 96.73 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 96.73 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 96.71 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 96.7 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.67 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 96.65 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 96.64 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 96.62 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 96.58 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 96.58 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.52 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 96.43 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 96.42 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 96.41 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 96.38 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 96.36 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 96.35 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.34 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 96.34 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 96.33 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.3 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 96.27 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 96.26 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 96.24 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.23 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 96.22 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 96.18 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.15 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 96.06 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 96.05 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 95.99 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 95.96 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 95.87 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 95.86 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 95.85 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 95.82 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 95.81 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 95.74 | |
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 95.63 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.52 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 95.51 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.48 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 95.47 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 95.34 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 95.21 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 95.13 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 95.08 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.07 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.06 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 95.02 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 94.99 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.98 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 94.9 | |
| COG3946 | 456 | VirJ Type IV secretory pathway, VirJ component [In | 94.85 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 94.83 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 94.75 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 94.72 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 94.7 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 94.65 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 94.5 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 94.47 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 94.36 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.3 | |
| TIGR03712 | 511 | acc_sec_asp2 accessory Sec system protein Asp2. Th | 94.3 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 94.3 | |
| KOG4388 | 880 | consensus Hormone-sensitive lipase HSL [Lipid tran | 93.89 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 93.61 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 93.56 | |
| KOG3975 | 301 | consensus Uncharacterized conserved protein [Funct | 93.54 | |
| KOG1551 | 371 | consensus Uncharacterized conserved protein [Funct | 93.44 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 93.33 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 93.29 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 93.22 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 93.21 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 93.09 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.08 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 93.05 | |
| PLN02209 | 437 | serine carboxypeptidase | 92.97 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 92.92 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 92.8 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 92.77 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.77 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 92.58 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 92.42 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 92.41 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 92.32 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 92.31 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 92.16 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 92.07 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.97 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 91.95 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 91.89 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 91.84 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 91.83 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 91.8 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.73 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 91.61 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 91.52 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 91.44 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 91.42 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 91.16 | |
| smart00824 | 212 | PKS_TE Thioesterase. Peptide synthetases are invol | 90.83 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 90.77 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 90.46 | |
| COG4287 | 507 | PqaA PhoPQ-activated pathogenicity-related protein | 90.45 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 90.1 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 89.98 | |
| PF02450 | 389 | LCAT: Lecithin:cholesterol acyltransferase; InterP | 89.91 | |
| KOG3724 | 973 | consensus Negative regulator of COPII vesicle form | 89.4 | |
| PLN02454 | 414 | triacylglycerol lipase | 89.26 |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=420.33 Aligned_cols=600 Identities=18% Similarity=0.236 Sum_probs=389.3
Q ss_pred HHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceee
Q 002209 102 IREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (953)
Q Consensus 102 ~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~ 181 (953)
..++.....+..+.++|+|+.++|.... ++....... +.+|+.+.. .
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------------~~~~~~~~~-----~~~~~~d~~------~--- 52 (620)
T COG1506 6 AEDLLALARVSDPRVSPPGGRLAYILTG-------------------LDFLKPLYK-----SSLWVSDGK------T--- 52 (620)
T ss_pred HHHHHhhhcccCcccCCCCceeEEeecc-------------------ccccccccc-----cceEEEecc------c---
Confidence 3556666678899999999999999874 222222222 367875531 1
Q ss_pred eecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 182 l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
+...+.+..+..+.|||||+.++|.... +....++|+++.. | .++..... +....|+|+|..+++.
T Consensus 53 ~~~~~~~~~~~~~~~spdg~~~~~~~~~-----~~~~~~l~l~~~~-g---~~~~~~~~-----v~~~~~~~~g~~~~~~ 118 (620)
T COG1506 53 VRLLTFGGGVSELRWSPDGSVLAFVSTD-----GGRVAQLYLVDVG-G---LITKTAFG-----VSDARWSPDGDRIAFL 118 (620)
T ss_pred ccccccCCcccccccCCCCCEEEEEecc-----CCCcceEEEEecC-C---ceeeeecc-----cccceeCCCCCeEEEE
Confidence 1113345578999999999999997731 3336899999987 4 22221221 5688899999999984
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccC
Q 002209 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPS 340 (953)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~S 340 (953)
........... .......+..+.. ..+ ....++++++..+....+... ..+..+.+.
T Consensus 119 ~~~~~~~~~~~---------------~~~~~~~~~~~~~-~~g------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 176 (620)
T COG1506 119 TAEGASKRDGG---------------DHLFVDRLPVWFD-GRG------GERSDLYVVDIESKLIKLGLGNLDVVSFATD 176 (620)
T ss_pred ecccccccCCc---------------eeeeecccceeec-CCC------CcccceEEEccCcccccccCCCCceeeeeeC
Confidence 22211110000 0000000000000 000 134678888884344444444 666777788
Q ss_pred CCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002209 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 341 pDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
+|++.++........ ..+..+..++....+.+..++..+. +...+.|.+||+.+++.....
T Consensus 177 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~gk~~~~~~~~~ 237 (620)
T COG1506 177 GDGRLVASIRLDDDA------DPWVTNLYVLIEGNGELESLTPGEG-------------SISKLAFDADGKSIALLGTES 237 (620)
T ss_pred CCCceeEEeeecccc------CCceEeeEEEecCCCceEEEcCCCc-------------eeeeeeeCCCCCeeEEeccCC
Confidence 888888777654320 1112233344333444444444321 234678999999877773222
Q ss_pred cCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeec
Q 002209 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD 500 (953)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 500 (953)
+. .. .....+++++. ..++... ..+..+ +...
T Consensus 238 ~~-~~----~~~~~~~~~~~---~~~~~d~-----------~~~~~~-------------------~~~~---------- 269 (620)
T COG1506 238 DR-GL----AEGDFILLLDG---ELGEVDG-----------DLSSGD-------------------DTRG---------- 269 (620)
T ss_pred cc-Cc----cccceEEEEec---cccccce-----------eeccCC-------------------cccC----------
Confidence 11 00 11122222220 0000000 000000 0000
Q ss_pred CCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeE
Q 002209 501 RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTV 580 (953)
Q Consensus 501 ~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~ 580 (953)
. .. +...-++..++|...+. . ....++..+...+. ..+...+..
T Consensus 270 -~-~~---------~~~~~~~~~~~~~~~~~--~---------------g~~~l~~~~~~~~~-~~~~~~~~~------- 313 (620)
T COG1506 270 -A-WA---------VEGGLDGDGLLFIATDG--G---------------GSSPLFRVDDLGGG-VEGLSGDDG------- 313 (620)
T ss_pred -c-HH---------hccccCCCcEEEEEecC--C---------------CceEEEEEeccCCc-eeeecCCCc-------
Confidence 0 00 01112334444444211 0 01112222222222 222222211
Q ss_pred eeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEecCC-CCCCCcCCCceEEEEEEcCCCcEEEEEEEcC
Q 002209 581 ALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFP-HPYPQLASLQKELIKYQRKDGVQLSATLYLP 659 (953)
Q Consensus 581 ~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~-~~~~~~~~~~~~~~~~~~~dg~~~~~~l~~P 659 (953)
.-..|+.+++.+++..+++..|+++|+++. ++..+++..+ ..+......++|.+++++.||.++++++++|
T Consensus 314 ------~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~dG~~i~~~l~~P 385 (620)
T COG1506 314 ------GVPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVTYKSNDGETIHGWLYKP 385 (620)
T ss_pred ------eEEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEEEEcCCCCEEEEEEecC
Confidence 112456688999999999999999999986 4445555443 3445667778999999999999999999999
Q ss_pred CCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh---hhhH
Q 002209 660 PGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFV 736 (953)
Q Consensus 660 ~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~~~ 736 (953)
+++++.++ +|+||++||||.... . .. .....+.|+.+||+|+.++++|+.|+|+++.. ..++
T Consensus 386 ~~~~~~k~--yP~i~~~hGGP~~~~------~---~~----~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g 450 (620)
T COG1506 386 PGFDPRKK--YPLIVYIHGGPSAQV------G---YS----FNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWG 450 (620)
T ss_pred CCCCCCCC--CCEEEEeCCCCcccc------c---cc----cchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccC
Confidence 99888775 999999999984321 1 11 12456789999999999999999999999765 3567
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccc---------c
Q 002209 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE---------D 807 (953)
Q Consensus 737 ~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~---------~ 807 (953)
..+++|++++++++.+.+.+|++|++|+|+||||+|+++++++.| +|+|+++..+.+++..+...+... .
T Consensus 451 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (620)
T COG1506 451 GVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGG 529 (620)
T ss_pred CccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHhCC
Confidence 789999999999999999999999999999999999999999997 899999999887765443322211 1
Q ss_pred chhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHH
Q 002209 808 RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVL 887 (953)
Q Consensus 808 ~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~ 887 (953)
...+ +.+.|.+.||+.++.++++|+|||||++|.+|| ++|+++|+++|+.+|+++++++||+++|++...++....+
T Consensus 530 ~~~~-~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~--~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~ 606 (620)
T COG1506 530 GPPE-DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVP--IEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVL 606 (620)
T ss_pred Cccc-ChHHHHhcChhhhhcccCCCEEEEeecCCccCC--hHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHH
Confidence 1122 677899999999999999999999999999999 9999999999999999999999999999998888889999
Q ss_pred HHHHHHHHHhccC
Q 002209 888 WETDRWLQKYCVS 900 (953)
Q Consensus 888 ~~i~~fl~~~l~~ 900 (953)
+++++||+++++.
T Consensus 607 ~~~~~~~~~~~~~ 619 (620)
T COG1506 607 KEILDWFKRHLKQ 619 (620)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999863
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=387.09 Aligned_cols=322 Identities=18% Similarity=0.136 Sum_probs=243.5
Q ss_pred CCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEecCCCC
Q 002209 551 IPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHP 630 (953)
Q Consensus 551 ~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~~~ 630 (953)
...|+++|+.+++...|.-.... + ...+ ..+.++++..+++..++...|.++|.+++.+++.+.|+..+.+
T Consensus 337 ~~~l~~~~~~~~~~~~l~~~~~~-~----~~~~----~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~~ 407 (686)
T PRK10115 337 LTSLRQINRKTREVIGIAFDDPA-Y----VTWI----AYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVP 407 (686)
T ss_pred EEEEEEEcCCCCceEEecCCCCc-e----Eeee----cccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecCCC
Confidence 45688899877777666522211 0 1110 0122356778999999999999999999999988888876543
Q ss_pred CCCcCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH
Q 002209 631 YPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA 710 (953)
Q Consensus 631 ~~~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 710 (953)
......+.++.+++++.||.+|+++++.|+.... .++.|+||++|||+.....+ .| ....+.|++
T Consensus 408 ~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~~~--~~~~P~ll~~hGg~~~~~~p---------~f----~~~~~~l~~ 472 (686)
T PRK10115 408 GFDAANYRSEHLWITARDGVEVPVSLVYHRKHFR--KGHNPLLVYGYGSYGASIDA---------DF----SFSRLSLLD 472 (686)
T ss_pred CcCccccEEEEEEEECCCCCEEEEEEEEECCCCC--CCCCCEEEEEECCCCCCCCC---------Cc----cHHHHHHHH
Confidence 2222355889999999999999996666543222 23479999999997554321 12 233568999
Q ss_pred cCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEE
Q 002209 711 RGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (953)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (953)
+||+|+.++.+|+.|+|+.+... ......++|+++++++|++++++|++|++|+|.|+||+|+.+++.++|++|+|+
T Consensus 473 rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~ 552 (686)
T PRK10115 473 RGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGV 552 (686)
T ss_pred CCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEE
Confidence 99999999999999999987653 223367999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCCCCC------CcC--cccccchhhhh--HHHHHhcCcccccCCCCCc-EEEEEeCCCCCCCCchHHHHHHHH
Q 002209 788 IARSGAYNRTLT------PFG--FQNEDRTLWEA--TSTYVEMSPFMSANKLKKP-ILLVHGEEDNNSGTLTMQSDRFFN 856 (953)
Q Consensus 788 v~~~~~~d~~~~------~~~--~~~~~~~~~~~--~~~~~~~sp~~~~~~i~~P-~Li~~G~~D~~v~~~~~~~~~~~~ 856 (953)
|+.+|++|+... +.. ...+.+.+++. .+.+.++||+.++++++.| +||+||.+|.+|| +.++.+++.
T Consensus 553 v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~--~~~~~k~~a 630 (686)
T PRK10115 553 IAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQ--YWEPAKWVA 630 (686)
T ss_pred EecCCchhHhhhcccCCCCCChhHHHHhCCCCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcC--chHHHHHHH
Confidence 999999996422 111 11223444432 3445679999999999999 6778999999999 999999999
Q ss_pred HHHhCCCcEEEEEe---CCCCccCCCcccHH---HHHHHHHHHHHHhccC
Q 002209 857 ALKGHGALCRLVIL---PFESHGYAARESIM---HVLWETDRWLQKYCVS 900 (953)
Q Consensus 857 ~l~~~g~~~~~~~~---~~~~H~~~~~~~~~---~~~~~i~~fl~~~l~~ 900 (953)
+|++.+.+++++++ +++||+. ..+.. ......+.|+-..+..
T Consensus 631 ~Lr~~~~~~~~vl~~~~~~~GHg~--~~~r~~~~~~~A~~~aFl~~~~~~ 678 (686)
T PRK10115 631 KLRELKTDDHLLLLCTDMDSGHGG--KSGRFKSYEGVAMEYAFLIALAQG 678 (686)
T ss_pred HHHhcCCCCceEEEEecCCCCCCC--CcCHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999888888 9999984 23333 3334567888777643
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=289.96 Aligned_cols=350 Identities=20% Similarity=0.234 Sum_probs=272.3
Q ss_pred CCCEEEEEeee--ccCCCcEEEEecCCCCCCCCCCeEEEEECC-CCceEEEeccCcccceeeeEeeccCCccccccccCC
Q 002209 520 TGTYVIAKIKK--ENDEGTYILLNGNGATPEGNIPFLDLFDIN-TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQL 596 (953)
Q Consensus 520 DG~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 596 (953)
.|+|-+-...+ .|.....||+.++.++|-.. +||+.... .|+..+||...-. ....++-+=+
T Consensus 498 SgeweVl~r~Gi~VdE~~~LVYf~gt~d~PlE~--hLyvvsye~~g~~~rlt~~g~s-------------h~~~l~~~~d 562 (867)
T KOG2281|consen 498 SGEWEVLARHGIWVDEVRKLVYFVGTKDTPLEH--HLYVVSYENPGEIARLTEPGYS-------------HSCELDQQCD 562 (867)
T ss_pred ccceeehhhcCeeecccceEEEEEccCCCCcee--eEEEEEEecCCceeeccCCCcc-------------cchhhhhhhh
Confidence 45565555444 56677888899998887554 79999987 9999999886632 1122344444
Q ss_pred EEEEEEecCCCCceEEEEECCCCCeeEEec----CC----CCCCCcCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCC
Q 002209 597 KILTSKESKTENTQYYIQSWPDKKSCQITD----FP----HPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDG 668 (953)
Q Consensus 597 ~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~----~~----~~~~~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~ 668 (953)
.++...++...|+.+.++.+.+++...+-. .+ ...++-+..+.|.|.|++..|..++|.+|+|.++++++|
T Consensus 563 ~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgkk- 641 (867)
T KOG2281|consen 563 HFVSYYSSVGSPPCVSLYSLSWPENDPLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKK- 641 (867)
T ss_pred hHhhhhhcCCCCceEEEEeccCCccCcccchhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCCCC-
Confidence 567777777788877766665544322211 00 011222333458899999899999999999999999986
Q ss_pred CccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh---hhhHHHHHHHHHH
Q 002209 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEA 745 (953)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~ 745 (953)
+|+|+++||||.. |+.. |.|.+........||++||+|+..|.+|+.-.|..+.. .+.+.-+++|...
T Consensus 642 -Yptvl~VYGGP~V------QlVn--nsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVe 712 (867)
T KOG2281|consen 642 -YPTVLNVYGGPGV------QLVN--NSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVE 712 (867)
T ss_pred -CceEEEEcCCCce------EEee--ccccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHH
Confidence 9999999999854 4443 56666555556789999999999888888777777542 3456677999999
Q ss_pred HHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccc-cchhhhhHHHHHhcCcc
Q 002209 746 AVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE-DRTLWEATSTYVEMSPF 823 (953)
Q Consensus 746 ~~~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~sp~ 823 (953)
.+++|.++ +++|.+||+|.||||||+|++.+++++|+.|+++|+.+|+.+|..++-+|... .+.+..+...|..-|-.
T Consensus 713 glq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT~W~~YDTgYTERYMg~P~~nE~gY~agSV~ 792 (867)
T KOG2281|consen 713 GLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVTDWRLYDTGYTERYMGYPDNNEHGYGAGSVA 792 (867)
T ss_pred HHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceeeEEeccCcceeeeeecccchhhhcCCCccchhcccchhHH
Confidence 99999998 58999999999999999999999999999999999999999998888777654 34444556667666766
Q ss_pred cccCCCC---CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 824 MSANKLK---KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 824 ~~~~~i~---~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
.++.++. ..+|++||--|++|+ +.+...+..+|-++|++.++++||++.|.....+.....-.+++.|+++
T Consensus 793 ~~VeklpdepnRLlLvHGliDENVH--F~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 793 GHVEKLPDEPNRLLLVHGLIDENVH--FAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred HHHhhCCCCCceEEEEecccccchh--hhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 7777763 469999999999999 9999999999999999999999999999998888888888889999876
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=307.66 Aligned_cols=325 Identities=26% Similarity=0.301 Sum_probs=245.6
Q ss_pred CCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCce-EEEEECCCCC-eeEEecC
Q 002209 550 NIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQ-YYIQSWPDKK-SCQITDF 627 (953)
Q Consensus 550 ~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~-l~~~~~~~g~-~~~Lt~~ 627 (953)
...+||.+++.+.....++...... .... ...+++...+.++.....+..|.. +-.......+ ...|. .
T Consensus 412 ~~~~ly~i~~~~~~~~~lt~~~~~~---~~~~-----~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~~~~~Le-~ 482 (755)
T KOG2100|consen 412 SERHLYSISLGSGTVESLTCSLITG---PCTY-----LSVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSKTIVVLE-T 482 (755)
T ss_pred CceEEEEEEccccccccccccCCCC---cceE-----EEEecCCcccEEEEEccCCCCCcceeeccccccceEEEEec-c
Confidence 3567999999988888877766430 0111 123566777888888888887743 2222211222 22333 2
Q ss_pred CCCCC----CcCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccch
Q 002209 628 PHPYP----QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703 (953)
Q Consensus 628 ~~~~~----~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~ 703 (953)
+..+. .......+..++.. +|....+.+.+|+++++++ ++|+||.+||||.. +++.. .+. ..+.
T Consensus 483 n~~~~~~~~~~~~p~~~~~~i~~-~~~~~~~~~~lP~~~~~~~--kyPllv~~yGGP~s-----q~v~~---~~~-~~~~ 550 (755)
T KOG2100|consen 483 NEELKKTIENVALPIVEFGKIEI-DGITANAILILPPNFDPSK--KYPLLVVVYGGPGS-----QSVTS---KFS-VDWN 550 (755)
T ss_pred ChhhHHHhhcccCCcceeEEEEe-ccEEEEEEEecCCCCCCCC--CCCEEEEecCCCCc-----ceeee---eEE-ecHH
Confidence 22221 12222223333333 8899999999999998877 49999999999852 11111 111 1122
Q ss_pred HHHHHHHcCcEEEEcCCCCCCCCCChhh---hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002209 704 SVLLWLARGFAILGGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
...+..+|++|+..|++|..|+|..+. ..+++..++.|++.+++++.+++++|.+||+|+|+|+||++++.++.++
T Consensus 551 -~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~ 629 (755)
T KOG2100|consen 551 -EVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESD 629 (755)
T ss_pred -HHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhC
Confidence 224567999999999999999999854 4566778999999999999999999999999999999999999999999
Q ss_pred C-CcccEEEEcccCCCCCCCCcCccccc-chhhhhHHHHHhcCcccccCCCCCcE-EEEEeCCCCCCCCchHHHHHHHHH
Q 002209 781 P-HLFCCGIARSGAYNRTLTPFGFQNED-RTLWEATSTYVEMSPFMSANKLKKPI-LLVHGEEDNNSGTLTMQSDRFFNA 857 (953)
Q Consensus 781 p-~~~~a~v~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~sp~~~~~~i~~P~-Li~~G~~D~~v~~~~~~~~~~~~~ 857 (953)
| +.|+|+|+++|++|+.+..-.+.... +.++++...|.+.++...++.++.|. |++||+.|.+|+ ++++.+++++
T Consensus 630 ~~~~fkcgvavaPVtd~~~yds~~terymg~p~~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh--~q~s~~~~~a 707 (755)
T KOG2100|consen 630 PGDVFKCGVAVAPVTDWLYYDSTYTERYMGLPSENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVH--FQQSAILIKA 707 (755)
T ss_pred cCceEEEEEEecceeeeeeecccccHhhcCCCccccchhhhccccchhhhhccCCEEEEEcCCcCCcC--HHHHHHHHHH
Confidence 8 78999999999999886554444333 55666666799999999999998887 999999999999 9999999999
Q ss_pred HHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 858 LKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 858 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
|+.+|+++++++||+++|++...+...+++..+..||..++
T Consensus 708 L~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~ 748 (755)
T KOG2100|consen 708 LQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCF 748 (755)
T ss_pred HHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHc
Confidence 99999999999999999999887878899999999999554
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-25 Score=240.98 Aligned_cols=299 Identities=20% Similarity=0.213 Sum_probs=217.5
Q ss_pred CCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEecCCCC
Q 002209 551 IPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHP 630 (953)
Q Consensus 551 ~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~~~ 630 (953)
.+.+++++.++++..-|.-.+.. |...+ ..+-.++...+++..++.++|.+++.+|+.+++.++|..-.
T Consensus 339 lp~v~v~~~~~~~~~~i~f~~~a-y~~~l--------~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~Lkqqe-- 407 (682)
T COG1770 339 LPRVVVRDRKTGEERGIAFDDEA-YSAGL--------SGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQE-- 407 (682)
T ss_pred CceEEEEecCCCceeeEEecchh-hhccc--------cCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEecc--
Confidence 67799999988877765433322 11000 11223466799999999999999999999999999888643
Q ss_pred CCC-c--CCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHH
Q 002209 631 YPQ-L--ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL 707 (953)
Q Consensus 631 ~~~-~--~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (953)
.+. + ..+..++++.+..||++|+..|+.-.++ ..+++.|++++.||.+..++++. |+ .....
T Consensus 408 V~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~--~~~g~~p~lLygYGaYG~s~~p~---------Fs----~~~lS 472 (682)
T COG1770 408 VPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDT--KLDGSAPLLLYGYGAYGISMDPS---------FS----IARLS 472 (682)
T ss_pred CCCCCChhHeEEEEEEEEcCCCcEeeEEEEEeccc--CCCCCCcEEEEEeccccccCCcC---------cc----cceee
Confidence 332 3 3467899999999999999999987653 33567999999999875554432 32 22446
Q ss_pred HHHcCcEEEEcCCCCCCCCCChhhhh-hh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcc
Q 002209 708 WLARGFAILGGPTTPIIGEGDEEAND-RF--VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (953)
Q Consensus 708 la~~G~~V~~~~~~~~~G~G~~~~~~-~~--~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 784 (953)
|+.+||+......+|..-.|+.+... +. -.+-+.|.+++.++|.++++.++++|+++|.|+||.+...++.+.|++|
T Consensus 473 LlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf 552 (682)
T COG1770 473 LLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLF 552 (682)
T ss_pred eecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhh
Confidence 88999877665555544455543321 11 2245899999999999999999999999999999999999999999999
Q ss_pred cEEEEcccCCCCCCCC----cCcccccchhhhh------HHHHHhcCcccccCCCC-CcEEEEEeCCCCCCCCchHHHHH
Q 002209 785 CCGIARSGAYNRTLTP----FGFQNEDRTLWEA------TSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDR 853 (953)
Q Consensus 785 ~a~v~~~~~~d~~~~~----~~~~~~~~~~~~~------~~~~~~~sp~~~~~~i~-~P~Li~~G~~D~~v~~~~~~~~~ 853 (953)
+++|+..|++|...+. ..+.......|.+ .+.+..+||.+++..-. +|+|++.|.+|.+|. +++..+
T Consensus 553 ~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGNP~d~e~y~yikSYSPYdNV~a~~YP~ilv~~Gl~D~rV~--YwEpAK 630 (682)
T COG1770 553 AGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGNPLDPEYYDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQ--YWEPAK 630 (682)
T ss_pred hheeecCCccchhhhhcCCCCCCCccchhhhCCcCCHHHHHHHhhcCchhccccCCCCceEEEccccCCccc--cchHHH
Confidence 9999999998832211 1111112222322 34456789999887754 578999999999999 999999
Q ss_pred HHHHHHhCCC---cEEEEEeCCCCccC
Q 002209 854 FFNALKGHGA---LCRLVILPFESHGY 877 (953)
Q Consensus 854 ~~~~l~~~g~---~~~~~~~~~~~H~~ 877 (953)
+..+|+..+. ++-+..-..+||+-
T Consensus 631 WvAkLR~~~td~~plLlkt~M~aGHgG 657 (682)
T COG1770 631 WVAKLRELKTDGNPLLLKTNMDAGHGG 657 (682)
T ss_pred HHHHHhhcccCCCcEEEEecccccCCC
Confidence 9999997643 34455546789964
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-27 Score=240.31 Aligned_cols=195 Identities=26% Similarity=0.406 Sum_probs=165.6
Q ss_pred HHHHHHHcCcEEEEcCCCCCCCCCChhhh---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002209 704 SVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
..++|+++||+|+.++++|+.|+|..+.. ..+....+.|+++++++|++++.+|++||+|+|+|+||++++.++.++
T Consensus 6 ~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~~ 85 (213)
T PF00326_consen 6 NAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQH 85 (213)
T ss_dssp HHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHHT
T ss_pred HHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhccc
Confidence 45678899999999999999999987654 356678899999999999999999999999999999999999999999
Q ss_pred CCcccEEEEcccCCCCCCCCcC---ccc----ccchhhhhHHHHHhcCcccccCC--CCCcEEEEEeCCCCCCCCchHHH
Q 002209 781 PHLFCCGIARSGAYNRTLTPFG---FQN----EDRTLWEATSTYVEMSPFMSANK--LKKPILLVHGEEDNNSGTLTMQS 851 (953)
Q Consensus 781 p~~~~a~v~~~~~~d~~~~~~~---~~~----~~~~~~~~~~~~~~~sp~~~~~~--i~~P~Li~~G~~D~~v~~~~~~~ 851 (953)
|++|+|+|+.+|++|....... +.. ....++...+.|...+|+..+.+ +++|+||+||++|.+|| +.++
T Consensus 86 ~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp--~~~s 163 (213)
T PF00326_consen 86 PDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVP--PSQS 163 (213)
T ss_dssp CCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSST--THHH
T ss_pred ceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccC--HHHH
Confidence 9999999999999886543211 111 11233456777888899999988 89999999999999999 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccC
Q 002209 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (953)
.+++++|++.|+++++++||+++|.+...+......+++.+||+++|+.
T Consensus 164 ~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 164 LRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLKK 212 (213)
T ss_dssp HHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999887777889999999999999964
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=236.76 Aligned_cols=272 Identities=15% Similarity=0.132 Sum_probs=188.6
Q ss_pred hHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCcee
Q 002209 101 EIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (953)
Q Consensus 101 ~~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~ 180 (953)
.+.+.+...-...+.++ +++|||+... .+.+.+... .+||+.|. || +..+
T Consensus 129 ~~~D~~~~~~tg~~g~~--~~~iayv~~~-------------------~~~~~~~~~-----~~l~~~d~--dG--~~~~ 178 (428)
T PRK01029 129 EAADTIHYALTGVPGIS--SGKIIFSLST-------------------TNSDTELKQ-----GELWSVDY--DG--QNLR 178 (428)
T ss_pred HHHHHHHHHHcCCCccc--cCEEEEEEee-------------------CCccccccc-----ceEEEEcC--CC--CCce
Confidence 34444433345566677 9999999874 222222222 48999887 55 5567
Q ss_pred eeecCCCCCcccceEeccCCCe--EEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEE
Q 002209 181 EIQGFPDGAKLNFVTWSQDGKH--LAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (953)
Q Consensus 181 ~l~~~~~~~~~~~~~wSPDG~~--laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l 258 (953)
+||. ....+..|+|||||++ ++|++. .++..+||++++++|+.++|+..+.. ...+.|||||+.|
T Consensus 179 ~lt~--~~~~~~sP~wSPDG~~~~~~y~S~------~~g~~~I~~~~l~~g~~~~lt~~~g~-----~~~p~wSPDG~~L 245 (428)
T PRK01029 179 PLTQ--EHSLSITPTWMHIGSGFPYLYVSY------KLGVPKIFLGSLENPAGKKILALQGN-----QLMPTFSPRKKLL 245 (428)
T ss_pred Eccc--CCCCcccceEccCCCceEEEEEEc------cCCCceEEEEECCCCCceEeecCCCC-----ccceEECCCCCEE
Confidence 7764 2235789999999998 455654 44678999999999999999876653 3478999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEE--EEc-C---CceeEeCCC-
Q 002209 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL--VSL-D---GTVKEIGPP- 331 (953)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~--~~~-~---g~~~~l~~~- 331 (953)
+|+.... +..++|+ +++ + |+.++++..
T Consensus 246 af~s~~~----------------------------------------------g~~di~~~~~~~~~g~~g~~~~lt~~~ 279 (428)
T PRK01029 246 AFISDRY----------------------------------------------GNPDLFIQSFSLETGAIGKPRRLLNEA 279 (428)
T ss_pred EEEECCC----------------------------------------------CCcceeEEEeecccCCCCcceEeecCC
Confidence 9883110 1123444 344 3 466777754
Q ss_pred -CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc--CceEEEeccCCCcccCCccccccccCccceeecc
Q 002209 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS 408 (953)
Q Consensus 332 -~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wsp 408 (953)
.....++|||||++|+|++.... ..+||+++++ ++..+.++.... ....+.|||
T Consensus 280 ~~~~~~p~wSPDG~~Laf~s~~~g----------~~~ly~~~~~~~g~~~~~lt~~~~-------------~~~~p~wSP 336 (428)
T PRK01029 280 FGTQGNPSFSPDGTRLVFVSNKDG----------RPRIYIMQIDPEGQSPRLLTKKYR-------------NSSCPAWSP 336 (428)
T ss_pred CCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECcccccceEEeccCCC-------------CccceeECC
Confidence 34578999999999999984321 1278888886 345666665321 224688999
Q ss_pred CCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 409 DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 409 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
||+.|+|.... .+...|+++|+ ++++.+.++........+.|||||+.|+|.....+ ...||.+++
T Consensus 337 DG~~Laf~~~~----------~g~~~I~v~dl---~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g-~~~L~~vdl 402 (428)
T PRK01029 337 DGKKIAFCSVI----------KGVRQICVYDL---ATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSN-ESELYLISL 402 (428)
T ss_pred CCCEEEEEEcC----------CCCcEEEEEEC---CCCCeEEccCCCCCccceEECCCCCEEEEEECCCC-CceEEEEEC
Confidence 99999998321 12357999996 77788888766656678999999999999876543 358999999
Q ss_pred CCCCCCcEEeec
Q 002209 489 GSKDVAPRILFD 500 (953)
Q Consensus 489 ~~~~~~~~~~~~ 500 (953)
+++ +.+.++.
T Consensus 403 ~~g--~~~~Lt~ 412 (428)
T PRK01029 403 ITK--KTRKIVI 412 (428)
T ss_pred CCC--CEEEeec
Confidence 885 4555654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=226.90 Aligned_cols=265 Identities=17% Similarity=0.153 Sum_probs=185.1
Q ss_pred eEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEE--EEEecCCCCCCCC
Q 002209 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL--VCTIPLLRGDPPK 271 (953)
Q Consensus 194 ~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l--~~~~~~~~~~~~~ 271 (953)
+..+ +++|||+....+...+....+||++|.+|+.+++||..... ..++.|||||+.+ +|.+
T Consensus 142 ~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~-----~~sP~wSPDG~~~~~~y~S--------- 205 (428)
T PRK01029 142 PGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSL-----SITPTWMHIGSGFPYLYVS--------- 205 (428)
T ss_pred Cccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCC-----cccceEccCCCceEEEEEE---------
Confidence 4445 88999998754332233467999999999999999986543 4589999999864 3341
Q ss_pred CCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEE
Q 002209 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILIS 349 (953)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~ 349 (953)
+.. +..+||++++ +|+.++|+.. +....+.|||||++|+|+
T Consensus 206 -----------------------------~~~--------g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~ 248 (428)
T PRK01029 206 -----------------------------YKL--------GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFI 248 (428)
T ss_pred -----------------------------ccC--------CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEE
Confidence 111 3468999999 8888888876 666789999999999999
Q ss_pred EecCCccccccCCCCCcceEE--EeccC---ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 350 SIHRPYSFIVPCGRFPRQVGV--WTTDG---IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~--~d~~g---~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
+.... ..++++ |++++ +..++++.... .....++|||||+.|+|..+.
T Consensus 249 s~~~g----------~~di~~~~~~~~~g~~g~~~~lt~~~~------------~~~~~p~wSPDG~~Laf~s~~----- 301 (428)
T PRK01029 249 SDRYG----------NPDLFIQSFSLETGAIGKPRRLLNEAF------------GTQGNPSFSPDGTRLVFVSNK----- 301 (428)
T ss_pred ECCCC----------CcceeEEEeecccCCCCcceEeecCCC------------CCcCCeEECCCCCEEEEEECC-----
Confidence 84321 115555 45553 45566664321 112468899999999998432
Q ss_pred cccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCc
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 504 (953)
++..+||++++ ...++..+.++........+.|||||++|+|....++ ..+||++|++++ +.+.++.....
T Consensus 302 -----~g~~~ly~~~~-~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g-~~~I~v~dl~~g--~~~~Lt~~~~~ 372 (428)
T PRK01029 302 -----DGRPRIYIMQI-DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG-VRQICVYDLATG--RDYQLTTSPEN 372 (428)
T ss_pred -----CCCceEEEEEC-cccccceEEeccCCCCccceeECCCCCEEEEEEcCCC-CcEEEEEECCCC--CeEEccCCCCC
Confidence 22347888885 1123456777766556678999999999999876543 358999999886 45566543211
Q ss_pred cccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCc
Q 002209 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (953)
Q Consensus 505 ~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~ 572 (953)
.. . +.|||||++|+|..... ....||++|+++++.++|+...+
T Consensus 373 -~~----~--p~wSpDG~~L~f~~~~~------------------g~~~L~~vdl~~g~~~~Lt~~~g 415 (428)
T PRK01029 373 -KE----S--PSWAIDSLHLVYSAGNS------------------NESELYLISLITKKTRKIVIGSG 415 (428)
T ss_pred -cc----c--eEECCCCCEEEEEECCC------------------CCceEEEEECCCCCEEEeecCCC
Confidence 11 1 67999999999986321 23469999999999999987654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=228.55 Aligned_cols=229 Identities=16% Similarity=0.195 Sum_probs=172.1
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
.+||++|. +| ...++++.. ...+..|+|||||++|+|.+. .++..+||++|+++|+.++++..+..
T Consensus 182 ~~l~~~d~--dg--~~~~~lt~~--~~~v~~p~wSpDG~~lay~s~------~~g~~~i~~~dl~~g~~~~l~~~~g~-- 247 (435)
T PRK05137 182 KRLAIMDQ--DG--ANVRYLTDG--SSLVLTPRFSPNRQEITYMSY------ANGRPRVYLLDLETGQRELVGNFPGM-- 247 (435)
T ss_pred eEEEEECC--CC--CCcEEEecC--CCCeEeeEECCCCCEEEEEEe------cCCCCEEEEEECCCCcEEEeecCCCc--
Confidence 38999997 44 455667642 246889999999999999874 33568999999999998888765542
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
...+.|||||+.|+|+... + +..+||++|+
T Consensus 248 ---~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d~~ 278 (435)
T PRK05137 248 ---TFAPRFSPDGRKVVMSLSQ---------------------------------------G-------GNTDIYTMDLR 278 (435)
T ss_pred ---ccCcEECCCCCEEEEEEec---------------------------------------C-------CCceEEEEECC
Confidence 4588999999999887210 0 3467999999
Q ss_pred CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002209 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
+|+.++++.. .....+.|||||++|+|++.+.. ..+||++|++++..++++.... .
T Consensus 279 ~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----------~~~Iy~~d~~g~~~~~lt~~~~-------------~ 335 (435)
T PRK05137 279 SGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----------SPQLYVMNADGSNPRRISFGGG-------------R 335 (435)
T ss_pred CCceEEccCCCCccCceeEcCCCCEEEEEECCCC----------CCeEEEEECCCCCeEEeecCCC-------------c
Confidence 8888999876 56678999999999999985431 2389999999988888875321 2
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCc
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 480 (953)
...+.|||||+.|+|... + .+...++++++ +++..+.++.. .....+.|||||+.|+|.....+..
T Consensus 336 ~~~~~~SpdG~~ia~~~~--~--------~~~~~i~~~d~---~~~~~~~lt~~-~~~~~p~~spDG~~i~~~~~~~~~~ 401 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQ--G--------GGQFSIGVMKP---DGSGERILTSG-FLVEGPTWAPNGRVIMFFRQTPGSG 401 (435)
T ss_pred ccCeEECCCCCEEEEEEc--C--------CCceEEEEEEC---CCCceEeccCC-CCCCCCeECCCCCEEEEEEccCCCC
Confidence 245789999999998731 1 12347889985 66666666543 3567899999999999987654331
Q ss_pred --eEEEEEcCCCC
Q 002209 481 --TRTWVISPGSK 491 (953)
Q Consensus 481 --~~l~~~d~~~~ 491 (953)
..||.++++++
T Consensus 402 ~~~~L~~~dl~g~ 414 (435)
T PRK05137 402 GAPKLYTVDLTGR 414 (435)
T ss_pred CcceEEEEECCCC
Confidence 48999999885
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-22 Score=225.76 Aligned_cols=228 Identities=15% Similarity=0.152 Sum_probs=171.2
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
.+||++|. || ...+.++. ....+..|+|||||++|+|++. ..+..+||++++++|+.++++..+..
T Consensus 179 ~~l~~~d~--dg--~~~~~lt~--~~~~~~~p~wSPDG~~la~~s~------~~g~~~i~i~dl~~G~~~~l~~~~~~-- 244 (429)
T PRK03629 179 YELRVSDY--DG--YNQFVVHR--SPQPLMSPAWSPDGSKLAYVTF------ESGRSALVIQTLANGAVRQVASFPRH-- 244 (429)
T ss_pred eeEEEEcC--CC--CCCEEeec--CCCceeeeEEcCCCCEEEEEEe------cCCCcEEEEEECCCCCeEEccCCCCC--
Confidence 48999998 44 44566654 2236889999999999999864 33567999999999999888865542
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
...+.|||||+.|+|+... + +..+||++|+
T Consensus 245 ---~~~~~~SPDG~~La~~~~~---------------------------------------~-------g~~~I~~~d~~ 275 (429)
T PRK03629 245 ---NGAPAFSPDGSKLAFALSK---------------------------------------T-------GSLNLYVMDLA 275 (429)
T ss_pred ---cCCeEECCCCCEEEEEEcC---------------------------------------C-------CCcEEEEEECC
Confidence 4579999999999987210 0 3357999999
Q ss_pred CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002209 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
+|+.++++.. .....+.|||||++|+|++.+.. ..+||++++++++.++++.... .
T Consensus 276 tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g----------~~~Iy~~d~~~g~~~~lt~~~~-------------~ 332 (429)
T PRK03629 276 SGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG----------RPQVYKVNINGGAPQRITWEGS-------------Q 332 (429)
T ss_pred CCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC----------CceEEEEECCCCCeEEeecCCC-------------C
Confidence 8888898876 66788999999999999985431 2379999999888777764321 1
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCc
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 480 (953)
...+.|||||+.|+|.... .....++++++ ++++.+.|+.. .....+.|||||+.|+|.+.++. .
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~----------~g~~~I~~~dl---~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~-~ 397 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSN----------GGQQHIAKQDL---ATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGM-G 397 (429)
T ss_pred ccCEEECCCCCEEEEEEcc----------CCCceEEEEEC---CCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCC-c
Confidence 2358899999999987321 12347899996 66777777743 33467999999999999987654 3
Q ss_pred eEEEEEcCCCC
Q 002209 481 TRTWVISPGSK 491 (953)
Q Consensus 481 ~~l~~~d~~~~ 491 (953)
..|+++++++.
T Consensus 398 ~~l~~~~~~G~ 408 (429)
T PRK03629 398 SVLNLVSTDGR 408 (429)
T ss_pred eEEEEEECCCC
Confidence 57999999874
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=218.85 Aligned_cols=230 Identities=11% Similarity=0.056 Sum_probs=170.4
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCe-EEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKH-LAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~-laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+||+.|. || ...+.++. .+ ....|.|||||++ ++|++. .++..+||++|+.+|+.++|+..+..
T Consensus 170 ~l~~~d~--dg--~~~~~~~~--~~-~~~~p~wSpDG~~~i~y~s~------~~~~~~Iyv~dl~tg~~~~lt~~~g~-- 234 (419)
T PRK04043 170 NIVLADY--TL--TYQKVIVK--GG-LNIFPKWANKEQTAFYYTSY------GERKPTLYKYNLYTGKKEKIASSQGM-- 234 (419)
T ss_pred eEEEECC--CC--CceeEEcc--CC-CeEeEEECCCCCcEEEEEEc------cCCCCEEEEEECCCCcEEEEecCCCc--
Confidence 8899887 55 44555542 23 5778999999997 666553 22367999999999999999875442
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
...+.|||||+.|+|+... + +..+||++++
T Consensus 235 ---~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~dl~ 265 (419)
T PRK04043 235 ---LVVSDVSKDGSKLLLTMAP---------------------------------------K-------GQPDIYLYDTN 265 (419)
T ss_pred ---EEeeEECCCCCEEEEEEcc---------------------------------------C-------CCcEEEEEECC
Confidence 3468899999999987210 0 3468999999
Q ss_pred CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002209 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
+|+.++|+.. .....+.|||||++|+|++.+.. ..+||++|+++++.++++...
T Consensus 266 ~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rlt~~g--------------- 320 (419)
T PRK04043 266 TKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQVVFHG--------------- 320 (419)
T ss_pred CCcEEEcccCCCccCccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeCccCC---------------
Confidence 8889999876 44668899999999999995531 238999999998888877531
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCc
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 480 (953)
.....|||||+.|+|.....+.. . ......|+++++ +++..+.|+... ....+.|||||+.|+|....+ ..
T Consensus 321 ~~~~~~SPDG~~Ia~~~~~~~~~-~---~~~~~~I~v~d~---~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~-~~ 391 (419)
T PRK04043 321 KNNSSVSTYKNYIVYSSRETNNE-F---GKNTFNLYLIST---NSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLG-NQ 391 (419)
T ss_pred CcCceECCCCCEEEEEEcCCCcc-c---CCCCcEEEEEEC---CCCCeEECCCCC-CcCCeEECCCCCEEEEEEccC-Cc
Confidence 12357999999999985332110 0 012358999996 777888888753 345799999999999997664 44
Q ss_pred eEEEEEcCCCC
Q 002209 481 TRTWVISPGSK 491 (953)
Q Consensus 481 ~~l~~~d~~~~ 491 (953)
..|+.+++++.
T Consensus 392 ~~L~~~~l~g~ 402 (419)
T PRK04043 392 SALGIIRLNYN 402 (419)
T ss_pred EEEEEEecCCC
Confidence 68999999884
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=219.68 Aligned_cols=227 Identities=18% Similarity=0.179 Sum_probs=167.2
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
+||++|. +| ...++++. ....+..|+|||||++|+|.+. .++..+||++|+++|+.++++..+..
T Consensus 177 ~L~~~D~--dG--~~~~~l~~--~~~~v~~p~wSPDG~~la~~s~------~~~~~~I~~~dl~~g~~~~l~~~~g~--- 241 (427)
T PRK02889 177 QLQISDA--DG--QNAQSALS--SPEPIISPAWSPDGTKLAYVSF------ESKKPVVYVHDLATGRRRVVANFKGS--- 241 (427)
T ss_pred EEEEECC--CC--CCceEecc--CCCCcccceEcCCCCEEEEEEc------cCCCcEEEEEECCCCCEEEeecCCCC---
Confidence 7899887 44 34455543 2346889999999999999774 34567899999999998888755532
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~ 322 (953)
...+.|||||+.|+++.. . + +..+||++++ +
T Consensus 242 --~~~~~~SPDG~~la~~~~--------------------------------------~-~-------g~~~Iy~~d~~~ 273 (427)
T PRK02889 242 --NSAPAWSPDGRTLAVALS--------------------------------------R-D-------GNSQIYTVNADG 273 (427)
T ss_pred --ccceEECCCCCEEEEEEc--------------------------------------c-C-------CCceEEEEECCC
Confidence 457999999999988621 0 1 3357999999 7
Q ss_pred CceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCc
Q 002209 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (953)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~ 401 (953)
+..++++.. ....++.|||||++|+|++.+.. ..+||+++++++..+.++.... ..
T Consensus 274 ~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g----------~~~Iy~~~~~~g~~~~lt~~g~-------------~~ 330 (427)
T PRK02889 274 SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG----------APQIYRMPASGGAAQRVTFTGS-------------YN 330 (427)
T ss_pred CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC----------CcEEEEEECCCCceEEEecCCC-------------Cc
Confidence 788888876 55678999999999999874321 2278888888777777664211 12
Q ss_pred cceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCce
Q 002209 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (953)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 481 (953)
..++|||||+.|+|.... .....|+++++ .+++.+.++... ....+.|||||+.|+|..+.++ ..
T Consensus 331 ~~~~~SpDG~~Ia~~s~~----------~g~~~I~v~d~---~~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~~g-~~ 395 (427)
T PRK02889 331 TSPRISPDGKLLAYISRV----------GGAFKLYVQDL---ATGQVTALTDTT-RDESPSFAPNGRYILYATQQGG-RS 395 (427)
T ss_pred CceEECCCCCEEEEEEcc----------CCcEEEEEEEC---CCCCeEEccCCC-CccCceECCCCCEEEEEEecCC-CE
Confidence 357899999999987321 12347999996 666777776543 3467999999999999987664 36
Q ss_pred EEEEEcCCCC
Q 002209 482 RTWVISPGSK 491 (953)
Q Consensus 482 ~l~~~d~~~~ 491 (953)
.|+.+++++.
T Consensus 396 ~l~~~~~~g~ 405 (427)
T PRK02889 396 VLAAVSSDGR 405 (427)
T ss_pred EEEEEECCCC
Confidence 8999999763
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-20 Score=197.74 Aligned_cols=290 Identities=20% Similarity=0.241 Sum_probs=211.6
Q ss_pred ccCCEEEEEEecCCCCceEEEEECCCCCe--eEEecCCCCCCCc--CCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCC
Q 002209 593 LNQLKILTSKESKTENTQYYIQSWPDKKS--CQITDFPHPYPQL--ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDG 668 (953)
Q Consensus 593 ~dg~~l~~~~~~~~~p~~l~~~~~~~g~~--~~Lt~~~~~~~~~--~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~ 668 (953)
.+...+.|+.+++.+|+.||.+|+.+|+. ..+.+....++.+ ..+.++++++++.||.+|++.|+.-+.. +..+
T Consensus 391 ~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~--k~dg 468 (712)
T KOG2237|consen 391 FKSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDI--KLDG 468 (712)
T ss_pred CCCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEechh--hhcC
Confidence 34678999999999999999999998842 3344443434444 4568999999999999999999985432 2234
Q ss_pred CccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhh---HHHHHHHHHH
Q 002209 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRF---VEQLVACAEA 745 (953)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~---~~~~~~D~~~ 745 (953)
+.|++|+.||++..+.+++ |.. ....|..+|++....+.||..++|..++.... -.+-+.|.++
T Consensus 469 ~~P~LLygYGay~isl~p~---------f~~----srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia 535 (712)
T KOG2237|consen 469 SKPLLLYGYGAYGISLDPS---------FRA----SRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIA 535 (712)
T ss_pred CCceEEEEecccceeeccc---------ccc----ceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHH
Confidence 6899999999875554432 211 12356779998888888888888888764321 2356899999
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC----cCcccccchhhhh---HHHHH
Q 002209 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP----FGFQNEDRTLWEA---TSTYV 818 (953)
Q Consensus 746 ~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~----~~~~~~~~~~~~~---~~~~~ 818 (953)
+++||.+++++.++++++.|.|.||.++..++.++|++|+|+|+..|+.|...+. ...+.....-|.+ .+.+.
T Consensus 536 ~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~~~~~~~ 615 (712)
T KOG2237|consen 536 CAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPEDFEDLI 615 (712)
T ss_pred HHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChhhhhhhh
Confidence 9999999999999999999999999999999999999999999999998843221 1111111122322 33445
Q ss_pred hcCcccccCCCC-----CcEEEEEeCCCCCCCCchHHHHHHHHHHHhC-------CCcEEEEEeCCCCccCCCccc-HHH
Q 002209 819 EMSPFMSANKLK-----KPILLVHGEEDNNSGTLTMQSDRFFNALKGH-------GALCRLVILPFESHGYAARES-IMH 885 (953)
Q Consensus 819 ~~sp~~~~~~i~-----~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~-------g~~~~~~~~~~~~H~~~~~~~-~~~ 885 (953)
.++|+..+++++ .-+||..+.+|.+|+ +.++.++.++|+.. ..++-+.+..++||+...... ..+
T Consensus 616 ~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~--~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~ 693 (712)
T KOG2237|consen 616 KISPYSPVDNIKKQVQYPSMLVTTADHDDRVG--PLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIE 693 (712)
T ss_pred eecccCccCCCchhccCcceEEeeccCCCccc--ccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHH
Confidence 566666666553 358999999999998 99999999999864 145778889999998643221 223
Q ss_pred HHHHHHHHHHHhcc
Q 002209 886 VLWETDRWLQKYCV 899 (953)
Q Consensus 886 ~~~~i~~fl~~~l~ 899 (953)
....+++||.+.+.
T Consensus 694 E~a~~yaFl~K~~~ 707 (712)
T KOG2237|consen 694 EAAFRYAFLAKMLN 707 (712)
T ss_pred HHHHHHHHHHHHhc
Confidence 34456778777653
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-21 Score=216.41 Aligned_cols=227 Identities=18% Similarity=0.141 Sum_probs=168.3
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
+||++|. +| ...+.|+.. ...+..|.|||||++|+|++. .++..+||++|+++|+.++++..+..
T Consensus 199 ~l~i~d~--dG--~~~~~l~~~--~~~~~~p~wSPDG~~La~~s~------~~g~~~L~~~dl~tg~~~~lt~~~g~--- 263 (448)
T PRK04792 199 QLMIADY--DG--YNEQMLLRS--PEPLMSPAWSPDGRKLAYVSF------ENRKAEIFVQDIYTQVREKVTSFPGI--- 263 (448)
T ss_pred EEEEEeC--CC--CCceEeecC--CCcccCceECCCCCEEEEEEe------cCCCcEEEEEECCCCCeEEecCCCCC---
Confidence 7899886 44 445566542 246889999999999999875 33568999999999998888765532
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~ 322 (953)
...+.|||||+.|+|+... + +..+||++|+ +
T Consensus 264 --~~~~~wSPDG~~La~~~~~---------------------------------------~-------g~~~Iy~~dl~t 295 (448)
T PRK04792 264 --NGAPRFSPDGKKLALVLSK---------------------------------------D-------GQPEIYVVDIAT 295 (448)
T ss_pred --cCCeeECCCCCEEEEEEeC---------------------------------------C-------CCeEEEEEECCC
Confidence 3478999999999987210 0 3357999999 8
Q ss_pred CceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCc
Q 002209 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (953)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~ 401 (953)
|+.++++.. .....++|||||++|+|++.... ..+||++++++++.+.++.... ..
T Consensus 296 g~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g----------~~~Iy~~dl~~g~~~~Lt~~g~-------------~~ 352 (448)
T PRK04792 296 KALTRITRHRAIDTEPSWHPDGKSLIFTSERGG----------KPQIYRVNLASGKVSRLTFEGE-------------QN 352 (448)
T ss_pred CCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEEecCCC-------------CC
Confidence 888888876 56678999999999999984421 2389999999888887764211 11
Q ss_pred cceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCce
Q 002209 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (953)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 481 (953)
..++|||||+.|+|.... .....|+++++ ++++.+.++... ....+.|||||+.|+|....++ ..
T Consensus 353 ~~~~~SpDG~~l~~~~~~----------~g~~~I~~~dl---~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g-~~ 417 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRT----------NGKFNIARQDL---ETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQG-KQ 417 (448)
T ss_pred cCeeECCCCCEEEEEEec----------CCceEEEEEEC---CCCCeEEccCCC-CCCCceECCCCCEEEEEEecCC-ce
Confidence 347899999998887321 22347889986 667777776543 3356899999999999887654 35
Q ss_pred EEEEEcCCCC
Q 002209 482 RTWVISPGSK 491 (953)
Q Consensus 482 ~l~~~d~~~~ 491 (953)
.||.++.++.
T Consensus 418 ~l~~~~~~G~ 427 (448)
T PRK04792 418 VLAAVSIDGR 427 (448)
T ss_pred EEEEEECCCC
Confidence 7999998764
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-21 Score=217.56 Aligned_cols=254 Identities=14% Similarity=0.149 Sum_probs=185.3
Q ss_pred CCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCC
Q 002209 200 GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGP 279 (953)
Q Consensus 200 G~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 279 (953)
+.+|||+.... .......+||++|.+|+..++++..... +..+.|||||+.|+|...
T Consensus 165 ~~~iafv~~~~--~~~~~~~~l~~~d~dg~~~~~lt~~~~~-----v~~p~wSpDG~~lay~s~---------------- 221 (435)
T PRK05137 165 DTRIVYVAESG--PKNKRIKRLAIMDQDGANVRYLTDGSSL-----VLTPRFSPNRQEITYMSY---------------- 221 (435)
T ss_pred CCeEEEEEeeC--CCCCcceEEEEECCCCCCcEEEecCCCC-----eEeeEECCCCCEEEEEEe----------------
Confidence 45899987632 0111267999999999988999876543 668999999999998821
Q ss_pred ceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccc
Q 002209 280 KMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (953)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~ 357 (953)
.. +..+||++++ +|+.++++.. +....++|||||++|+|+....
T Consensus 222 ----------------------~~--------g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~---- 267 (435)
T PRK05137 222 ----------------------AN--------GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQG---- 267 (435)
T ss_pred ----------------------cC--------CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecC----
Confidence 10 3368999999 8888888765 6677899999999999987432
Q ss_pred cccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEE
Q 002209 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (953)
Q Consensus 358 ~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~ 437 (953)
...+||++|++++..++|+..+.. ...+.|||||+.|+|..+. .+..+||+
T Consensus 268 ------g~~~Iy~~d~~~~~~~~Lt~~~~~-------------~~~~~~spDG~~i~f~s~~----------~g~~~Iy~ 318 (435)
T PRK05137 268 ------GNTDIYTMDLRSGTTTRLTDSPAI-------------DTSPSYSPDGSQIVFESDR----------SGSPQLYV 318 (435)
T ss_pred ------CCceEEEEECCCCceEEccCCCCc-------------cCceeEcCCCCEEEEEECC----------CCCCeEEE
Confidence 123799999999888888875422 2458899999999987422 22458999
Q ss_pred EecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEe
Q 002209 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRR 517 (953)
Q Consensus 438 ~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 517 (953)
+++ ++++.+.++........+.|||||++|+|.....+ ..+|++++++++ ..+.++... .. .. ++|
T Consensus 319 ~d~---~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~-~~~i~~~d~~~~--~~~~lt~~~--~~----~~--p~~ 384 (435)
T PRK05137 319 MNA---DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGG-QFSIGVMKPDGS--GERILTSGF--LV----EG--PTW 384 (435)
T ss_pred EEC---CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCC-ceEEEEEECCCC--ceEeccCCC--CC----CC--CeE
Confidence 996 77778888776666677999999999999875443 358999998774 334444321 11 12 679
Q ss_pred ccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 518 TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 518 SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
||||++|+|.....+ . . ....||++|+++++.++|.
T Consensus 385 spDG~~i~~~~~~~~------------~--~-~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 385 APNGRVIMFFRQTPG------------S--G-GAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred CCCCCEEEEEEccCC------------C--C-CcceEEEEECCCCceEEcc
Confidence 999999999874221 0 0 0246999999988887765
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.1e-21 Score=214.64 Aligned_cols=253 Identities=16% Similarity=0.165 Sum_probs=185.1
Q ss_pred CeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002209 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (953)
Q Consensus 201 ~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (953)
++|||+.... ++....+||++|.+|+..++++..... +..+.|||||+.|+|....
T Consensus 164 ~riayv~~~~---~~~~~~~l~~~d~dg~~~~~lt~~~~~-----~~~p~wSPDG~~la~~s~~---------------- 219 (429)
T PRK03629 164 TRIAYVVQTN---GGQFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFE---------------- 219 (429)
T ss_pred CeEEEEEeeC---CCCcceeEEEEcCCCCCCEEeecCCCc-----eeeeEEcCCCCEEEEEEec----------------
Confidence 6899987633 133467999999999888889876542 5689999999999987210
Q ss_pred eeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCcccc
Q 002209 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (953)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~ 358 (953)
+ +..+||++++ +|+.+.++.. +....+.|||||++|+|+....
T Consensus 220 -----------------------~-------g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~----- 264 (429)
T PRK03629 220 -----------------------S-------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT----- 264 (429)
T ss_pred -----------------------C-------CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCC-----
Confidence 0 3357999999 8888888765 5667899999999999986332
Q ss_pred ccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEE
Q 002209 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (953)
Q Consensus 359 ~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (953)
...+||+||++++..++++.... ....+.|||||+.|+|..+. .+..+||++
T Consensus 265 -----g~~~I~~~d~~tg~~~~lt~~~~-------------~~~~~~wSPDG~~I~f~s~~----------~g~~~Iy~~ 316 (429)
T PRK03629 265 -----GSLNLYVMDLASGQIRQVTDGRS-------------NNTEPTWFPDSQNLAYTSDQ----------AGRPQVYKV 316 (429)
T ss_pred -----CCcEEEEEECCCCCEEEccCCCC-------------CcCceEECCCCCEEEEEeCC----------CCCceEEEE
Confidence 12379999999888888876432 12468899999999998322 223489999
Q ss_pred ecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEec
Q 002209 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (953)
Q Consensus 439 d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~S 518 (953)
++ ++++.++++........+.|||||++|+|....++ ...||+++++++ +.+.++... .+ .+ ++||
T Consensus 317 d~---~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g-~~~I~~~dl~~g--~~~~Lt~~~-~~-----~~--p~~S 382 (429)
T PRK03629 317 NI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG-QQHIAKQDLATG--GVQVLTDTF-LD-----ET--PSIA 382 (429)
T ss_pred EC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEccCC-CceEEEEECCCC--CeEEeCCCC-CC-----CC--ceEC
Confidence 86 66777777665555567999999999999876543 357999999885 455555321 11 12 5699
Q ss_pred cCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCc
Q 002209 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (953)
Q Consensus 519 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~ 572 (953)
|||++|+|...+. ....|++++++++..++|...++
T Consensus 383 pDG~~i~~~s~~~------------------~~~~l~~~~~~G~~~~~l~~~~~ 418 (429)
T PRK03629 383 PNGTMVIYSSSQG------------------MGSVLNLVSTDGRFKARLPATDG 418 (429)
T ss_pred CCCCEEEEEEcCC------------------CceEEEEEECCCCCeEECccCCC
Confidence 9999999987432 13358999998888888765443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=192.22 Aligned_cols=388 Identities=16% Similarity=0.153 Sum_probs=232.0
Q ss_pred eecCC--CCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002209 115 SFSPQ--RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (953)
Q Consensus 115 ~~SPD--G~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~ 192 (953)
-.-|| |.+|.|+..+ +||.+++.+ ++.++||+. -+.+.
T Consensus 43 ~l~PDI~GD~IiFt~~D----------------------------------dlWe~slk~----g~~~ritS~--lGVvn 82 (668)
T COG4946 43 YLNPDIYGDRIIFTCCD----------------------------------DLWEYSLKD----GKPLRITSG--LGVVN 82 (668)
T ss_pred hcCCcccCcEEEEEech----------------------------------HHHHhhhcc----CCeeEEecc--cceec
Confidence 34565 8999999986 889998865 667777742 24789
Q ss_pred ceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC---C
Q 002209 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD---P 269 (953)
Q Consensus 193 ~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~---~ 269 (953)
.|.+||||++|||++-- ....-...+||+++.++|+++++|..+.. . ..-..|+|||+.|+++..-..-. .
T Consensus 83 n~kf~pdGrkvaf~rv~--~~ss~~taDly~v~~e~Ge~kRiTyfGr~-f---T~VaG~~~dg~iiV~TD~~tPF~q~~~ 156 (668)
T COG4946 83 NPKFSPDGRKVAFSRVM--LGSSLQTADLYVVPSEDGEAKRITYFGRR-F---TRVAGWIPDGEIIVSTDFHTPFSQWTE 156 (668)
T ss_pred cccCCCCCcEEEEEEEE--ecCCCccccEEEEeCCCCcEEEEEEeccc-c---ceeeccCCCCCEEEEeccCCCccccee
Confidence 99999999999995531 12233467999999999999999988532 1 23456999999999771110000 0
Q ss_pred --------CCCCCCCCCCceee--cCCCccccchhhhhhcCC-------------cchh---------------------
Q 002209 270 --------PKKPLVPLGPKMQS--NEKRDIIQVRTFQDLLKD-------------EYDE--------------------- 305 (953)
Q Consensus 270 --------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------------~~d~--------------------- 305 (953)
......+.||...- .++ .+.-.|...|+--. +.|+
T Consensus 157 lYkv~~dg~~~e~LnlGpathiv~~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~ 235 (668)
T COG4946 157 LYKVNVDGIKTEPLNLGPATHIVIKDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVG 235 (668)
T ss_pred eeEEccCCceeeeccCCceeeEEEeCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEc
Confidence 00111122222110 010 00001110000000 0000
Q ss_pred -h---hhhhhccceEEEEEcCC-ceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEE
Q 002209 306 -D---LFDYYATTQLVLVSLDG-TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE 380 (953)
Q Consensus 306 -~---~~~~~~~~~l~~~~~~g-~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~ 380 (953)
. +.++.+.++||.+|++| ..++-|+...+..-..+.|||+|+|+. .++||++|.++..++.
T Consensus 236 ~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~--------------~GdIylydP~td~lek 301 (668)
T COG4946 236 ERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQN--------------AGDIYLYDPETDSLEK 301 (668)
T ss_pred ceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEec--------------CCcEEEeCCCcCccee
Confidence 0 01222668899999955 566666653333345678999999997 3489999998777666
Q ss_pred eccC-CCc--ccCCccccccccCccceeeccCCCCceEEEE-------ec--------------------cCCCcccccc
Q 002209 381 LCDL-PLA--EDIPIAFNSVRKGMRSINWRSDKPSTLYWAE-------TQ--------------------DGGDAKVEVT 430 (953)
Q Consensus 381 l~~~-~~~--~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~-------~~--------------------~~~~~~~~~~ 430 (953)
|.-. |.. ..++...+.+ .-...++. .+|..|++... .. ++...-.-..
T Consensus 302 ldI~lpl~rk~k~~k~~~ps-kyledfa~-~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~ 379 (668)
T COG4946 302 LDIGLPLDRKKKQPKFVNPS-KYLEDFAV-VNGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTN 379 (668)
T ss_pred eecCCccccccccccccCHH-Hhhhhhcc-CCCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEecc
Confidence 5433 332 1222211100 00000000 12332322211 00 1110001112
Q ss_pred cCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCC
Q 002209 431 PRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510 (953)
Q Consensus 431 ~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 510 (953)
..+.+-+++. .+++.+.+...-+.+..+..|+||+.++.+.+ +.+||++|.+++ +++.+......-+..
T Consensus 380 dgD~l~iyd~---~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd----r~el~vididng--nv~~idkS~~~lItd-- 448 (668)
T COG4946 380 DGDKLGIYDK---DGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND----RFELWVIDIDNG--NVRLIDKSEYGLITD-- 448 (668)
T ss_pred CCceEEEEec---CCceEEEeeCCccceEEEEEcCCCcEEEEEcC----ceEEEEEEecCC--CeeEecccccceeEE--
Confidence 2346777775 77888888888888899999999999888743 248999999996 445444333332222
Q ss_pred CCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCcccc
Q 002209 511 GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGD 590 (953)
Q Consensus 511 ~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 590 (953)
+.|+|+++|+||..-. +|+ ..+|.++|+.+++...+|..... +-.++
T Consensus 449 ----f~~~~nsr~iAYafP~-----gy~------------tq~Iklydm~~~Kiy~vTT~ta~------------DfsPa 495 (668)
T COG4946 449 ----FDWHPNSRWIAYAFPE-----GYY------------TQSIKLYDMDGGKIYDVTTPTAY------------DFSPA 495 (668)
T ss_pred ----EEEcCCceeEEEecCc-----cee------------eeeEEEEecCCCeEEEecCCccc------------ccCcc
Confidence 7899999999999731 111 34699999999999888876642 34589
Q ss_pred ccccCCEEEEEEecCCCCc
Q 002209 591 LYLNQLKILTSKESKTENT 609 (953)
Q Consensus 591 ~s~dg~~l~~~~~~~~~p~ 609 (953)
|+|||++|+|.....-.|.
T Consensus 496 FD~d~ryLYfLs~RsLdPs 514 (668)
T COG4946 496 FDPDGRYLYFLSARSLDPS 514 (668)
T ss_pred cCCCCcEEEEEeccccCCC
Confidence 9999999999776655553
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-21 Score=217.10 Aligned_cols=234 Identities=15% Similarity=0.109 Sum_probs=172.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
.+||++|. +| ...++|+.. +..+..|+|||||++|+|++. ..+..+||++++++|+.++++..+..
T Consensus 184 ~~l~i~D~--~g--~~~~~lt~~--~~~v~~p~wSpDg~~la~~s~------~~~~~~l~~~dl~~g~~~~l~~~~g~-- 249 (433)
T PRK04922 184 YALQVADS--DG--YNPQTILRS--AEPILSPAWSPDGKKLAYVSF------ERGRSAIYVQDLATGQRELVASFRGI-- 249 (433)
T ss_pred EEEEEECC--CC--CCceEeecC--CCccccccCCCCCCEEEEEec------CCCCcEEEEEECCCCCEEEeccCCCC--
Confidence 37899997 34 445666542 246889999999999999864 33567899999999998888765432
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
...+.|||||+.|+|+... + +..+||++++
T Consensus 250 ---~~~~~~SpDG~~l~~~~s~---------------------------------------~-------g~~~Iy~~d~~ 280 (433)
T PRK04922 250 ---NGAPSFSPDGRRLALTLSR---------------------------------------D-------GNPEIYVMDLG 280 (433)
T ss_pred ---ccCceECCCCCEEEEEEeC---------------------------------------C-------CCceEEEEECC
Confidence 4478999999999887210 0 3357999999
Q ss_pred CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002209 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
+|+.++++.. .....++|||||++|+|++.+.. ..+||+++++++..++++.... .
T Consensus 281 ~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~lt~~g~-------------~ 337 (433)
T PRK04922 281 SRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAERLTFQGN-------------Y 337 (433)
T ss_pred CCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEeecCCC-------------C
Confidence 8888888876 55578999999999999985421 1279999998887777764221 1
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCc
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 480 (953)
...++|||||+.|+|... + +....|+++++ .+++.+.++... ....+.|||||+.|+|..... +.
T Consensus 338 ~~~~~~SpDG~~Ia~~~~--~--------~~~~~I~v~d~---~~g~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~~-g~ 402 (433)
T PRK04922 338 NARASVSPDGKKIAMVHG--S--------GGQYRIAVMDL---STGSVRTLTPGS-LDESPSFAPNGSMVLYATREG-GR 402 (433)
T ss_pred ccCEEECCCCCEEEEEEC--C--------CCceeEEEEEC---CCCCeEECCCCC-CCCCceECCCCCEEEEEEecC-Cc
Confidence 235889999999998722 1 12347899996 667777776544 346789999999999988764 34
Q ss_pred eEEEEEcCCCCCCCcEEee
Q 002209 481 TRTWVISPGSKDVAPRILF 499 (953)
Q Consensus 481 ~~l~~~d~~~~~~~~~~~~ 499 (953)
..||.++++++ ....+.
T Consensus 403 ~~L~~~~~~g~--~~~~l~ 419 (433)
T PRK04922 403 GVLAAVSTDGR--VRQRLV 419 (433)
T ss_pred eEEEEEECCCC--ceEEcc
Confidence 68999999774 334443
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-23 Score=208.53 Aligned_cols=355 Identities=16% Similarity=0.122 Sum_probs=226.5
Q ss_pred cccccccCCCCCCCchhhhcccCCCCCcccccccceecccccccccccccccccccCCCCCCCccccccccccccccccc
Q 002209 13 HRGVSLLTPSSLSPPIFLCLKLGRVPGHLRTHSIKTTTAMTASRLHHLVPIHSVSSKNDGTNGSLSSSNAVATEDEDNLE 92 (953)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (953)
.|..+|.+|+.++||. .++|++||++|+.+|.--+...|.+|+...+ .++..|+.|..
T Consensus 152 ~R~~ll~elskyi~p~---------------------illP~rRLehLl~qAv~~Q~d~cvyhnslds-vsll~Dh~c~~ 209 (519)
T KOG0293|consen 152 ERDKLLDELSKYIPPN---------------------ILLPKRRLEHLLEQAVKYQRDSCVYHNSLDS-VSLLSDHFCGR 209 (519)
T ss_pred hHHHHHHHHHhhCCHh---------------------hcCChHHHHHHHHHHHHHHHhHhHHhcccch-hhhhhhcccCc
Confidence 3889999999999999 8899999999999999999999998886655 57788898887
Q ss_pred CCcCCCchhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccC
Q 002209 93 GRYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP 172 (953)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 172 (953)
.+.+.....+..-+.. +++.++|||+|++||.++.+ . ...||.+..
T Consensus 210 ~qip~qt~qil~~htd-EVWfl~FS~nGkyLAsaSkD-------------------------~--------Taiiw~v~~ 255 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTD-EVWFLQFSHNGKYLASASKD-------------------------S--------TAIIWIVVY 255 (519)
T ss_pred ccCCchhhhhHhhCCC-cEEEEEEcCCCeeEeeccCC-------------------------c--------eEEEEEEec
Confidence 6666655555444433 89999999999999999886 2 224555545
Q ss_pred CCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEe
Q 002209 173 DGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV 252 (953)
Q Consensus 173 ~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~ws 252 (953)
|+...-.+.+.++. ..+....||||.++|+.+.. ...++++|+++|+.+.+.....+ ..+.+++|-
T Consensus 256 d~~~kl~~tlvgh~--~~V~yi~wSPDdryLlaCg~---------~e~~~lwDv~tgd~~~~y~~~~~---~S~~sc~W~ 321 (519)
T KOG0293|consen 256 DVHFKLKKTLVGHS--QPVSYIMWSPDDRYLLACGF---------DEVLSLWDVDTGDLRHLYPSGLG---FSVSSCAWC 321 (519)
T ss_pred Ccceeeeeeeeccc--CceEEEEECCCCCeEEecCc---------hHheeeccCCcchhhhhcccCcC---CCcceeEEc
Confidence 55322233443332 36899999999999998653 34599999999998877665521 126699999
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCcc---ccch--hhhhhcCCcchhhhhhhhccceEEEEEc-CCcee
Q 002209 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDI---IQVR--TFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK 326 (953)
Q Consensus 253 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~ 326 (953)
|||..++...++.... .++.++... .++| .+.|+.-+..+...+.+.....|..++. +...+
T Consensus 322 pDg~~~V~Gs~dr~i~------------~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr 389 (519)
T KOG0293|consen 322 PDGFRFVTGSPDRTII------------MWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR 389 (519)
T ss_pred cCCceeEecCCCCcEE------------EecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh
Confidence 9999988775543221 122221111 0111 1122222222222233334456666776 44333
Q ss_pred -EeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCcccee
Q 002209 327 -EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (953)
Q Consensus 327 -~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (953)
.+++...++++.+|.|||++++.-.. .++++||++. .+.+....+....-+...++.+|
T Consensus 390 ~lise~~~its~~iS~d~k~~LvnL~~-------------qei~LWDl~e--~~lv~kY~Ghkq~~fiIrSCFgg----- 449 (519)
T KOG0293|consen 390 GLISEEQPITSFSISKDGKLALVNLQD-------------QEIHLWDLEE--NKLVRKYFGHKQGHFIIRSCFGG----- 449 (519)
T ss_pred ccccccCceeEEEEcCCCcEEEEEccc-------------CeeEEeecch--hhHHHHhhcccccceEEEeccCC-----
Confidence 44445788999999999988877633 4899999982 22222211110000000011111
Q ss_pred eccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEE
Q 002209 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (953)
Q Consensus 406 wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 485 (953)
-|.+ |. ..-++.++||+|+. ..|.-...|+++...++.++|+|.....+.++.+++ ..+||-
T Consensus 450 --~~~~---fi----------aSGSED~kvyIWhr--~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg-tIRIWg 511 (519)
T KOG0293|consen 450 --GNDK---FI----------ASGSEDSKVYIWHR--ISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG-TIRIWG 511 (519)
T ss_pred --CCcc---eE----------EecCCCceEEEEEc--cCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC-eEEEec
Confidence 0111 11 11156779999995 344445567888888999999999888666555443 247775
Q ss_pred Ec
Q 002209 486 IS 487 (953)
Q Consensus 486 ~d 487 (953)
.+
T Consensus 512 ~~ 513 (519)
T KOG0293|consen 512 PS 513 (519)
T ss_pred CC
Confidence 44
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-21 Score=216.62 Aligned_cols=226 Identities=19% Similarity=0.229 Sum_probs=168.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++|+|++.. ++.. .||+||+.+ ++.++++..+ .
T Consensus 197 ~v~~p~wSPDG~~la~~s~~------------------------~~~~------~I~~~dl~~----g~~~~l~~~~--g 240 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFE------------------------SKKP------VVYVHDLAT----GRRRVVANFK--G 240 (427)
T ss_pred CcccceEcCCCCEEEEEEcc------------------------CCCc------EEEEEECCC----CCEEEeecCC--C
Confidence 46689999999999998863 1222 689999954 5556666444 3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
....|.|||||++|+|+.. .++..+||++|+++++.++++..... ...+.|||||+.|+|.+.
T Consensus 241 ~~~~~~~SPDG~~la~~~~------~~g~~~Iy~~d~~~~~~~~lt~~~~~-----~~~~~wSpDG~~l~f~s~------ 303 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALS------RDGNSQIYTVNADGSGLRRLTQSSGI-----DTEPFFSPDGRSIYFTSD------ 303 (427)
T ss_pred CccceEECCCCCEEEEEEc------cCCCceEEEEECCCCCcEECCCCCCC-----CcCeEEcCCCCEEEEEec------
Confidence 4678999999999999764 44678999999999988889875432 447899999999998721
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~ 347 (953)
. + +..+||.+++ +++.++++.. .....++|||||++|+
T Consensus 304 --------------------------------~-~-------g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 304 --------------------------------R-G-------GAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred --------------------------------C-C-------CCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 0 0 3357999998 7777777654 4456789999999999
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
|.+.... ..+|++||+++++.+.++... ....+.|||||+.|+|..+.
T Consensus 344 ~~s~~~g----------~~~I~v~d~~~g~~~~lt~~~--------------~~~~p~~spdg~~l~~~~~~-------- 391 (427)
T PRK02889 344 YISRVGG----------AFKLYVQDLATGQVTALTDTT--------------RDESPSFAPNGRYILYATQQ-------- 391 (427)
T ss_pred EEEccCC----------cEEEEEEECCCCCeEEccCCC--------------CccCceECCCCCEEEEEEec--------
Confidence 9874321 127999999988888776532 11467899999999998432
Q ss_pred ccccCCeEEEEecCCCCCCCceEEeecccccCCeeecc
Q 002209 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD 465 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~Sp 465 (953)
.++..++++++ +|...+.+....+.+..++|||
T Consensus 392 --~g~~~l~~~~~---~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 392 --GGRSVLAAVSS---DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred --CCCEEEEEEEC---CCCceEEeecCCCCCCCCccCC
Confidence 23457888885 6666666766677788899998
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-21 Score=212.48 Aligned_cols=228 Identities=14% Similarity=0.179 Sum_probs=167.1
Q ss_pred CCCceecCCCCE-EEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 111 LPALSFSPQRDK-ILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 111 ~~~~~~SPDG~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
...|.|||||++ ++|++.. .+.. +||++|+.+ ++.++|+..+ .
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~------------------------~~~~------~Iyv~dl~t----g~~~~lt~~~--g 233 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYG------------------------ERKP------TLYKYNLYT----GKKEKIASSQ--G 233 (419)
T ss_pred eEeEEECCCCCcEEEEEEcc------------------------CCCC------EEEEEECCC----CcEEEEecCC--C
Confidence 457999999997 6666653 1222 799999854 6677877533 3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
....|.|||||++|+|+.. .+++.+||++++++++.++||..+.. ...+.|+|||+.|+|++.
T Consensus 234 ~~~~~~~SPDG~~la~~~~------~~g~~~Iy~~dl~~g~~~~LT~~~~~-----d~~p~~SPDG~~I~F~Sd------ 296 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMA------PKGQPDIYLYDTNTKTLTQITNYPGI-----DVNGNFVEDDKRIVFVSD------ 296 (419)
T ss_pred cEEeeEECCCCCEEEEEEc------cCCCcEEEEEECCCCcEEEcccCCCc-----cCccEECCCCCEEEEEEC------
Confidence 4567999999999999875 34578999999999999999876642 236789999999999831
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCcccccccCCCCcEEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~~ 348 (953)
.. +..+||++++ +|+.++++..+.. ...|||||++|+|
T Consensus 297 --------------------------------r~--------g~~~Iy~~dl~~g~~~rlt~~g~~-~~~~SPDG~~Ia~ 335 (419)
T PRK04043 297 --------------------------------RL--------GYPNIFMKKLNSGSVEQVVFHGKN-NSSVSTYKNYIVY 335 (419)
T ss_pred --------------------------------CC--------CCceEEEEECCCCCeEeCccCCCc-CceECCCCCEEEE
Confidence 10 3468999999 8888888765322 4699999999999
Q ss_pred EEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (953)
+.......+ .....+|+++|+++++.+.|+..... ..+.|||||+.|+|....
T Consensus 336 ~~~~~~~~~----~~~~~~I~v~d~~~g~~~~LT~~~~~--------------~~p~~SPDG~~I~f~~~~--------- 388 (419)
T PRK04043 336 SSRETNNEF----GKNTFNLYLISTNSDYIRRLTANGVN--------------QFPRFSSDGGSIMFIKYL--------- 388 (419)
T ss_pred EEcCCCccc----CCCCcEEEEEECCCCCeEECCCCCCc--------------CCeEECCCCCEEEEEEcc---------
Confidence 985432110 01124899999999999988874211 257899999999998332
Q ss_pred cccCCeEEEEecCCCCCCCceEEeecccccCCeee
Q 002209 429 VTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW 463 (953)
Q Consensus 429 ~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~ 463 (953)
.+...|+++++ +|.....+....+.+..++|
T Consensus 389 -~~~~~L~~~~l---~g~~~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 389 -GNQSALGIIRL---NYNKSFLFPLKVGKIQSIDW 419 (419)
T ss_pred -CCcEEEEEEec---CCCeeEEeecCCCccCCCCC
Confidence 23457899986 77777777766677777777
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-21 Score=215.27 Aligned_cols=226 Identities=16% Similarity=0.230 Sum_probs=168.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..|+|||||++|+|++.. ++.. +||++|+.+ ++.++++..+ .
T Consensus 219 ~~~~p~wSPDG~~La~~s~~------------------------~g~~------~L~~~dl~t----g~~~~lt~~~--g 262 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFE------------------------NRKA------EIFVQDIYT----QVREKVTSFP--G 262 (448)
T ss_pred cccCceECCCCCEEEEEEec------------------------CCCc------EEEEEECCC----CCeEEecCCC--C
Confidence 35689999999999998863 1223 789999854 4556666443 2
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
....|.|||||++|+|+.. .++..+||++|+++++.++++..... ...+.|+|||+.|+|+..
T Consensus 263 ~~~~~~wSPDG~~La~~~~------~~g~~~Iy~~dl~tg~~~~lt~~~~~-----~~~p~wSpDG~~I~f~s~------ 325 (448)
T PRK04792 263 INGAPRFSPDGKKLALVLS------KDGQPEIYVVDIATKALTRITRHRAI-----DTEPSWHPDGKSLIFTSE------ 325 (448)
T ss_pred CcCCeeECCCCCEEEEEEe------CCCCeEEEEEECCCCCeEECccCCCC-----ccceEECCCCCEEEEEEC------
Confidence 3568999999999999764 34578999999999999999875432 457899999999998721
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~ 347 (953)
. + +..+||++++ +|+.++++.. .....++|||||++|+
T Consensus 326 --------------------------------~-~-------g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~ 365 (448)
T PRK04792 326 --------------------------------R-G-------GKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMI 365 (448)
T ss_pred --------------------------------C-C-------CCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEE
Confidence 0 0 3358999999 8888888744 4445689999999999
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
|.....+ ..+|+++|++++..+.++..... ..+.|+|||+.|+|....
T Consensus 366 ~~~~~~g----------~~~I~~~dl~~g~~~~lt~~~~d--------------~~ps~spdG~~I~~~~~~-------- 413 (448)
T PRK04792 366 MVNRTNG----------KFNIARQDLETGAMQVLTSTRLD--------------ESPSVAPNGTMVIYSTTY-------- 413 (448)
T ss_pred EEEecCC----------ceEEEEEECCCCCeEEccCCCCC--------------CCceECCCCCEEEEEEec--------
Confidence 9874421 23789999998888777653211 256799999999987432
Q ss_pred ccccCCeEEEEecCCCCCCCceEEeecccccCCeeecc
Q 002209 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD 465 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~Sp 465 (953)
.....++++++ +|+..+.++...+....++|||
T Consensus 414 --~g~~~l~~~~~---~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 414 --QGKQVLAAVSI---DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred --CCceEEEEEEC---CCCceEECcCCCCCcCCCccCC
Confidence 23457899885 7777777776667778899998
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=214.21 Aligned_cols=227 Identities=15% Similarity=0.173 Sum_probs=168.2
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
.|+++|. +| ...+.++. .+..+..|.|||||++|+|++. .++..+||++++++|+.++++..+..
T Consensus 180 ~l~~~d~--~g--~~~~~l~~--~~~~~~~p~wSpDG~~la~~s~------~~~~~~l~~~~l~~g~~~~l~~~~g~--- 244 (430)
T PRK00178 180 TLQRSDY--DG--ARAVTLLQ--SREPILSPRWSPDGKRIAYVSF------EQKRPRIFVQNLDTGRREQITNFEGL--- 244 (430)
T ss_pred EEEEECC--CC--CCceEEec--CCCceeeeeECCCCCEEEEEEc------CCCCCEEEEEECCCCCEEEccCCCCC---
Confidence 6888887 34 44556643 3346789999999999999874 33567999999999999888765432
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~ 322 (953)
...+.|||||+.|+|+.. . + +..+||++|+ +
T Consensus 245 --~~~~~~SpDG~~la~~~~--------------------------------------~-~-------g~~~Iy~~d~~~ 276 (430)
T PRK00178 245 --NGAPAWSPDGSKLAFVLS--------------------------------------K-D-------GNPEIYVMDLAS 276 (430)
T ss_pred --cCCeEECCCCCEEEEEEc--------------------------------------c-C-------CCceEEEEECCC
Confidence 447899999999998721 0 0 3357999999 8
Q ss_pred CceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCc
Q 002209 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (953)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~ 401 (953)
|+.++++.. .....+.|||||++|+|.+.+.+ ..+|+++++++++.++++.... ..
T Consensus 277 ~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g----------~~~iy~~d~~~g~~~~lt~~~~-------------~~ 333 (430)
T PRK00178 277 RQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG----------KPQIYKVNVNGGRAERVTFVGN-------------YN 333 (430)
T ss_pred CCeEEcccCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCCC-------------Cc
Confidence 888888876 56678999999999999984431 2379999998887777764211 11
Q ss_pred cceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCce
Q 002209 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (953)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 481 (953)
..+.|||||+.|+|.... .....|+++|+ .+++.+.++... ....+.|||||+.|+|+....+ ..
T Consensus 334 ~~~~~Spdg~~i~~~~~~----------~~~~~l~~~dl---~tg~~~~lt~~~-~~~~p~~spdg~~i~~~~~~~g-~~ 398 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQ----------DGNFHVAAQDL---QRGSVRILTDTS-LDESPSVAPNGTMLIYATRQQG-RG 398 (430)
T ss_pred cceEECCCCCEEEEEEcc----------CCceEEEEEEC---CCCCEEEccCCC-CCCCceECCCCCEEEEEEecCC-ce
Confidence 357899999999887321 12336899996 667777777543 3457899999999999987654 36
Q ss_pred EEEEEcCCCC
Q 002209 482 RTWVISPGSK 491 (953)
Q Consensus 482 ~l~~~d~~~~ 491 (953)
+||.++.+++
T Consensus 399 ~l~~~~~~g~ 408 (430)
T PRK00178 399 VLMLVSINGR 408 (430)
T ss_pred EEEEEECCCC
Confidence 8999999774
|
|
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=201.55 Aligned_cols=287 Identities=20% Similarity=0.201 Sum_probs=222.8
Q ss_pred cccCCEEEEEEecCCCCceEEEEECCCCCeeEEecCCCCCCCcCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCcc
Q 002209 592 YLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLP 671 (953)
Q Consensus 592 s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P 671 (953)
+.+|..+.+...+...|+.+|+.+..+++.+.+..... ..+-+.+.++.+..++.||++|+.+++. ++.+.. +.|
T Consensus 348 ~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p~-~FDa~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d---~~p 422 (648)
T COG1505 348 DKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQPV-QFDADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD---ENP 422 (648)
T ss_pred CCCCcEEEEEeecccCCCceEEEecCCceehhhhhccC-CcCccCceEEEEEEEcCCCccccEEEEe-cCCcCC---CCc
Confidence 45678899999999999999999988888877765432 1223457889999999999999999998 664333 589
Q ss_pred EEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhh---hHHHHHHHHHHHHH
Q 002209 672 CLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR---FVEQLVACAEAAVE 748 (953)
Q Consensus 672 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~---~~~~~~~D~~~~~~ 748 (953)
++|+.|||...+.. | .|. .....|+++|.+.+..+.+|..-+|..++... -....++|..++++
T Consensus 423 Tll~aYGGF~vslt--------P-~fs----~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVae 489 (648)
T COG1505 423 TLLYAYGGFNISLT--------P-RFS----GSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAE 489 (648)
T ss_pred eEEEeccccccccC--------C-ccc----hhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHH
Confidence 99999998644332 2 122 22378999998888878877777887765432 24567999999999
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCc-----Ccccccchh--hhhHHHHHhcC
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF-----GFQNEDRTL--WEATSTYVEMS 821 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~-----~~~~~~~~~--~~~~~~~~~~s 821 (953)
.|+++++..|++++|.|.|-||.++..++.++|++|.|+|+..|+.|+.-+.. .+..+.+.+ -++...+.++|
T Consensus 490 dLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW~~EYG~Pd~P~d~~~l~~YS 569 (648)
T COG1505 490 DLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLAYS 569 (648)
T ss_pred HHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcccccchhhHhhcCCCCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998643221 122222222 23345678899
Q ss_pred cccccCCC--CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH-HHHHHHHHHHHHHhc
Q 002209 822 PFMSANKL--KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI-MHVLWETDRWLQKYC 898 (953)
Q Consensus 822 p~~~~~~i--~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~-~~~~~~i~~fl~~~l 898 (953)
|+++++.- -.|+||..+++|.+|+ |.|+++|+.+|+..+.++-+.+--++||+-...... ......++.||.+.|
T Consensus 570 Py~nl~~g~kYP~~LITTs~~DDRVH--PaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L 647 (648)
T COG1505 570 PYHNLKPGQKYPPTLITTSLHDDRVH--PAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTL 647 (648)
T ss_pred chhcCCccccCCCeEEEccccccccc--chHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhh
Confidence 99988763 4699999999999999 999999999999999998888877889986533322 344556788888876
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.2e-20 Score=207.60 Aligned_cols=255 Identities=16% Similarity=0.142 Sum_probs=183.4
Q ss_pred CCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCC
Q 002209 200 GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGP 279 (953)
Q Consensus 200 G~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 279 (953)
+.+|+|+.... ..+....+||++|.+++..++++..... +..++|||||+.|+|...
T Consensus 167 ~~~ia~v~~~~--~~~~~~~~l~i~D~~g~~~~~lt~~~~~-----v~~p~wSpDg~~la~~s~---------------- 223 (433)
T PRK04922 167 WTRIAYVTVSG--AGGAMRYALQVADSDGYNPQTILRSAEP-----ILSPAWSPDGKKLAYVSF---------------- 223 (433)
T ss_pred cceEEEEEEeC--CCCCceEEEEEECCCCCCceEeecCCCc-----cccccCCCCCCEEEEEec----------------
Confidence 35799987532 1223457899999998888889876543 668999999999998721
Q ss_pred ceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccc
Q 002209 280 KMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (953)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~ 357 (953)
.. +..+||++++ +|+.+.++.. +....+.|||||++|+|+.....
T Consensus 224 ----------------------~~--------~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g--- 270 (433)
T PRK04922 224 ----------------------ER--------GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG--- 270 (433)
T ss_pred ----------------------CC--------CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC---
Confidence 00 3357999999 8888888755 55568999999999999864321
Q ss_pred cccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEE
Q 002209 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (953)
Q Consensus 358 ~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~ 437 (953)
..+|+++|+++++.++++..... ...++|||||+.|+|..+. .+..+||+
T Consensus 271 -------~~~Iy~~d~~~g~~~~lt~~~~~-------------~~~~~~spDG~~l~f~sd~----------~g~~~iy~ 320 (433)
T PRK04922 271 -------NPEIYVMDLGSRQLTRLTNHFGI-------------DTEPTWAPDGKSIYFTSDR----------GGRPQIYR 320 (433)
T ss_pred -------CceEEEEECCCCCeEECccCCCC-------------ccceEECCCCCEEEEEECC----------CCCceEEE
Confidence 23899999998888887764321 2357899999999998322 22347999
Q ss_pred EecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEe
Q 002209 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRR 517 (953)
Q Consensus 438 ~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 517 (953)
+++ ++++.++++........++|||||++|+|....+ ...+|++++++++ +.+.++.... + .. +.|
T Consensus 321 ~dl---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~-~~~~I~v~d~~~g--~~~~Lt~~~~-~-----~~--p~~ 386 (433)
T PRK04922 321 VAA---SGGSAERLTFQGNYNARASVSPDGKKIAMVHGSG-GQYRIAVMDLSTG--SVRTLTPGSL-D-----ES--PSF 386 (433)
T ss_pred EEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEECCC-CceeEEEEECCCC--CeEECCCCCC-C-----CC--ceE
Confidence 986 6667777765444445799999999999986543 3358999999875 4555554321 1 12 579
Q ss_pred ccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCc
Q 002209 518 TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (953)
Q Consensus 518 SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~ 572 (953)
||||++|+|..... ....||+++++++..++++...+
T Consensus 387 spdG~~i~~~s~~~------------------g~~~L~~~~~~g~~~~~l~~~~g 423 (433)
T PRK04922 387 APNGSMVLYATREG------------------GRGVLAAVSTDGRVRQRLVSADG 423 (433)
T ss_pred CCCCCEEEEEEecC------------------CceEEEEEECCCCceEEcccCCC
Confidence 99999999987421 24469999998888787775543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8e-20 Score=207.24 Aligned_cols=221 Identities=17% Similarity=0.171 Sum_probs=157.8
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
.+||+||. +| ...+.|+.. ...+..|.|||||++|+|++. +++..+||++|+++|+.+.++..+..
T Consensus 184 ~~i~i~d~--dg--~~~~~lt~~--~~~v~~p~wSPDG~~la~~s~------~~~~~~i~i~dl~tg~~~~l~~~~g~-- 249 (429)
T PRK01742 184 YEVRVADY--DG--FNQFIVNRS--SQPLMSPAWSPDGSKLAYVSF------ENKKSQLVVHDLRSGARKVVASFRGH-- 249 (429)
T ss_pred EEEEEECC--CC--CCceEeccC--CCccccceEcCCCCEEEEEEe------cCCCcEEEEEeCCCCceEEEecCCCc--
Confidence 47999997 44 334555432 236899999999999999874 33567899999999988777654432
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
...++|||||+.|+++... + +..+||++|+
T Consensus 250 ---~~~~~wSPDG~~La~~~~~---------------------------------------~-------g~~~Iy~~d~~ 280 (429)
T PRK01742 250 ---NGAPAFSPDGSRLAFASSK---------------------------------------D-------GVLNIYVMGAN 280 (429)
T ss_pred ---cCceeECCCCCEEEEEEec---------------------------------------C-------CcEEEEEEECC
Confidence 3478999999999987210 1 3357999999
Q ss_pred CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002209 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
+++.++++.. ..+..+.|||||++|+|++.+.. ..+||.++.+++..+.+.. . +
T Consensus 281 ~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g----------~~~I~~~~~~~~~~~~l~~-~--------------~ 335 (429)
T PRK01742 281 GGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG----------SPQVYRMSASGGGASLVGG-R--------------G 335 (429)
T ss_pred CCCeEeeccCCCCcCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEecC-C--------------C
Confidence 7888888876 66788999999999999974321 1267777777666555421 1 1
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCc
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 480 (953)
..+.|||||+.|++. .. +.++++|+ .+++.+.++.. .....+.|||||+.|+|++.++..
T Consensus 336 -~~~~~SpDG~~ia~~-------------~~-~~i~~~Dl---~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~- 395 (429)
T PRK01742 336 -YSAQISADGKTLVMI-------------NG-DNVVKQDL---TSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLG- 395 (429)
T ss_pred -CCccCCCCCCEEEEE-------------cC-CCEEEEEC---CCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCc-
Confidence 246799999998887 21 35777886 55666666543 344679999999999999875543
Q ss_pred eEEEEEcCCCC
Q 002209 481 TRTWVISPGSK 491 (953)
Q Consensus 481 ~~l~~~d~~~~ 491 (953)
..++.++.++.
T Consensus 396 ~~l~~~~~~G~ 406 (429)
T PRK01742 396 KVLQLVSADGR 406 (429)
T ss_pred eEEEEEECCCC
Confidence 34666676663
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=205.44 Aligned_cols=255 Identities=16% Similarity=0.129 Sum_probs=182.8
Q ss_pred CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCC
Q 002209 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLG 278 (953)
Q Consensus 199 DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 278 (953)
-.++|+|+.... ...++..+||++|.+|+..++++..... +..+.|||||+.|+|...
T Consensus 161 f~~~ia~v~~~~--~~~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~wSpDG~~la~~s~--------------- 218 (430)
T PRK00178 161 FSTRILYVTAER--FSVNTRYTLQRSDYDGARAVTLLQSREP-----ILSPRWSPDGKRIAYVSF--------------- 218 (430)
T ss_pred ceeeEEEEEeeC--CCCCcceEEEEECCCCCCceEEecCCCc-----eeeeeECCCCCEEEEEEc---------------
Confidence 345799977533 1123456899999999888888765542 568999999999998721
Q ss_pred CceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCcc
Q 002209 279 PKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYS 356 (953)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~ 356 (953)
. + +..+||++++ +|+.++++.. +....+.|||||++|+|+.....
T Consensus 219 -----------------------~-~-------~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g-- 265 (430)
T PRK00178 219 -----------------------E-Q-------KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG-- 265 (430)
T ss_pred -----------------------C-C-------CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC--
Confidence 0 0 2357999999 8888888765 55667999999999999874321
Q ss_pred ccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEE
Q 002209 357 FIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIY 436 (953)
Q Consensus 357 ~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~ 436 (953)
..+||++|++++..++++..... ...+.|||||+.|+|..+. .+..+||
T Consensus 266 --------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~~spDg~~i~f~s~~----------~g~~~iy 314 (430)
T PRK00178 266 --------NPEIYVMDLASRQLSRVTNHPAI-------------DTEPFWGKDGRTLYFTSDR----------GGKPQIY 314 (430)
T ss_pred --------CceEEEEECCCCCeEEcccCCCC-------------cCCeEECCCCCEEEEEECC----------CCCceEE
Confidence 23899999998888888764321 2457899999999998322 2345799
Q ss_pred EEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeE
Q 002209 437 TQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMR 516 (953)
Q Consensus 437 ~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 516 (953)
++++ .+++.++++........+.|||||++|+|....++ ..+||.+|++++ +.+.+++.. .+ .. ++
T Consensus 315 ~~d~---~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~-~~~l~~~dl~tg--~~~~lt~~~-~~-----~~--p~ 380 (430)
T PRK00178 315 KVNV---NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDG-NFHVAAQDLQRG--SVRILTDTS-LD-----ES--PS 380 (430)
T ss_pred EEEC---CCCCEEEeecCCCCccceEECCCCCEEEEEEccCC-ceEEEEEECCCC--CEEEccCCC-CC-----CC--ce
Confidence 9986 66777777644434456899999999999876543 457999999885 455565432 11 12 56
Q ss_pred eccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccC
Q 002209 517 RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (953)
Q Consensus 517 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~ 571 (953)
|||||++++|..... ....|++++++++..+++....
T Consensus 381 ~spdg~~i~~~~~~~------------------g~~~l~~~~~~g~~~~~l~~~~ 417 (430)
T PRK00178 381 VAPNGTMLIYATRQQ------------------GRGVLMLVSINGRVRLPLPTAQ 417 (430)
T ss_pred ECCCCCEEEEEEecC------------------CceEEEEEECCCCceEECcCCC
Confidence 999999999987422 2346999999877766665433
|
|
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-20 Score=182.95 Aligned_cols=232 Identities=14% Similarity=0.146 Sum_probs=169.8
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEc
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (953)
...-.+.+.+|.++....|+|.+- .++..+|+++||... . ........+..|++.||.|++
T Consensus 27 ~~~~~~~n~rG~~lft~~W~p~~~----~~pr~lv~~~HG~g~------------~--~s~~~~~~a~~l~~~g~~v~a- 87 (313)
T KOG1455|consen 27 YSESFFTNPRGAKLFTQSWLPLSG----TEPRGLVFLCHGYGE------------H--SSWRYQSTAKRLAKSGFAVYA- 87 (313)
T ss_pred eeeeeEEcCCCCEeEEEecccCCC----CCCceEEEEEcCCcc------------c--chhhHHHHHHHHHhCCCeEEE-
Confidence 344557788999999999999652 245778999999420 0 011123467789999999999
Q ss_pred CCCCCCCCCChhhhhh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 719 PTTPIIGEGDEEANDR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 719 ~~~~~~G~G~~~~~~~---~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
+|..|+|.+.+... .+...++|+...++.++.+......+.+++||||||.+++.++.++|+.+.++|+++|++-
T Consensus 88 --~D~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~ 165 (313)
T KOG1455|consen 88 --IDYEGHGRSDGLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCK 165 (313)
T ss_pred --eeccCCCcCCCCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccc
Confidence 66678888876443 3678899999999998887655556899999999999999999999999999999998643
Q ss_pred CC--CC-----------------CcCc-ccc------cchhhhhHHHHHhc----------------------CcccccC
Q 002209 796 RT--LT-----------------PFGF-QNE------DRTLWEATSTYVEM----------------------SPFMSAN 827 (953)
Q Consensus 796 ~~--~~-----------------~~~~-~~~------~~~~~~~~~~~~~~----------------------sp~~~~~ 827 (953)
.. .. .|.. ... .+.++. ...... ....++.
T Consensus 166 i~~~~kp~p~v~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~--r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~ 243 (313)
T KOG1455|consen 166 ISEDTKPHPPVISILTLLSKLIPTWKIVPTKDIIDVAFKDPEK--RKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLN 243 (313)
T ss_pred cCCccCCCcHHHHHHHHHHHhCCceeecCCccccccccCCHHH--HHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcc
Confidence 11 00 0100 000 011111 111111 2234567
Q ss_pred CCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCC---CcccHHHHHHHHHHHHHHh
Q 002209 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA---ARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 828 ~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~---~~~~~~~~~~~i~~fl~~~ 897 (953)
++..|+||+||++|.++. +.-++++|+.+...+ +++.+|||+-|.+. ..++.+.++..|.+||+++
T Consensus 244 ~vtvPflilHG~dD~VTD--p~~Sk~Lye~A~S~D--KTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 244 EVTVPFLILHGTDDKVTD--PKVSKELYEKASSSD--KTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cccccEEEEecCCCcccC--cHHHHHHHHhccCCC--CceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 788999999999999988 999999999987765 46778999999976 4567889999999999875
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-19 Score=200.70 Aligned_cols=221 Identities=18% Similarity=0.201 Sum_probs=160.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..|+|||||++|||++.+ +.. ..||+||+.+ ++.+.++.++.
T Consensus 205 ~v~~p~wSPDG~~la~~s~~------------------------~~~------~~i~i~dl~t----g~~~~l~~~~g-- 248 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFE------------------------NKK------SQLVVHDLRS----GARKVVASFRG-- 248 (429)
T ss_pred ccccceEcCCCCEEEEEEec------------------------CCC------cEEEEEeCCC----CceEEEecCCC--
Confidence 46789999999999998863 122 2689999854 44556654432
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
....++|||||++|+|... .++..+||++|+++++.++++..... ...+.|+|||+.|+|+..
T Consensus 249 ~~~~~~wSPDG~~La~~~~------~~g~~~Iy~~d~~~~~~~~lt~~~~~-----~~~~~wSpDG~~i~f~s~------ 311 (429)
T PRK01742 249 HNGAPAFSPDGSRLAFASS------KDGVLNIYVMGANGGTPSQLTSGAGN-----NTEPSWSPDGQSILFTSD------ 311 (429)
T ss_pred ccCceeECCCCCEEEEEEe------cCCcEEEEEEECCCCCeEeeccCCCC-----cCCEEECCCCCEEEEEEC------
Confidence 3457999999999999764 33567899999999999999875432 558999999999998721
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCcccccccCCCCcEEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~~ 348 (953)
. + +..+||.++. ++..++++... ..+.|||||++|++
T Consensus 312 --------------------------------~-~-------g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~ 349 (429)
T PRK01742 312 --------------------------------R-S-------GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVM 349 (429)
T ss_pred --------------------------------C-C-------CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEE
Confidence 0 0 3357999998 66666663323 46789999999999
Q ss_pred EEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (953)
... ..+++||+.++..+.++... . ..++.|||||+.|+|... +
T Consensus 350 ~~~--------------~~i~~~Dl~~g~~~~lt~~~-~-------------~~~~~~sPdG~~i~~~s~--~------- 392 (429)
T PRK01742 350 ING--------------DNVVKQDLTSGSTEVLSSTF-L-------------DESPSISPNGIMIIYSST--Q------- 392 (429)
T ss_pred EcC--------------CCEEEEECCCCCeEEecCCC-C-------------CCCceECCCCCEEEEEEc--C-------
Confidence 863 26888999877766665321 1 135789999999988732 1
Q ss_pred cccCCeEEEEecCCCCCCCceEEeecccccCCeeeccC
Q 002209 429 VTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466 (953)
Q Consensus 429 ~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpD 466 (953)
.....++++++ +|...+.+..+.+.+..++|||-
T Consensus 393 -g~~~~l~~~~~---~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 393 -GLGKVLQLVSA---DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred -CCceEEEEEEC---CCCceEEccCCCCCCCCcccCCC
Confidence 22335667664 77777778777777888999984
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-19 Score=193.22 Aligned_cols=244 Identities=16% Similarity=0.179 Sum_probs=166.1
Q ss_pred CcCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcC
Q 002209 633 QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG 712 (953)
Q Consensus 633 ~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G 712 (953)
....+..+...++..||.++++..+.|++. ..+.++||++||.... ..+ ........|+++|
T Consensus 26 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~----~~~~~~VvllHG~~~~------------~~~--~~~~~~~~L~~~G 87 (330)
T PLN02298 26 ALKGIKGSKSFFTSPRGLSLFTRSWLPSSS----SPPRALIFMVHGYGND------------ISW--TFQSTAIFLAQMG 87 (330)
T ss_pred hccCCccccceEEcCCCCEEEEEEEecCCC----CCCceEEEEEcCCCCC------------cce--ehhHHHHHHHhCC
Confidence 344456667778888999999999988641 1246899999995210 011 1122345688899
Q ss_pred cEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEE
Q 002209 713 FAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (953)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (953)
|.|++ +|.+|+|.+.... ......+.|+.++++++......+..+++|+||||||.+++.++.++|++++++|+
T Consensus 88 y~V~~---~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl 164 (330)
T PLN02298 88 FACFA---LDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVL 164 (330)
T ss_pred CEEEE---ecCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEE
Confidence 99999 5667888775322 23567789999999999876444456899999999999999999999999999999
Q ss_pred cccCCCCCCC---CcCc----------------ccccchh-----hhhHHHHHhcCc----------------------c
Q 002209 790 RSGAYNRTLT---PFGF----------------QNEDRTL-----WEATSTYVEMSP----------------------F 823 (953)
Q Consensus 790 ~~~~~d~~~~---~~~~----------------~~~~~~~-----~~~~~~~~~~sp----------------------~ 823 (953)
.+|....... .+.. ....... ......+...+| .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
T PLN02298 165 VAPMCKISDKIRPPWPIPQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLG 244 (330)
T ss_pred ecccccCCcccCCchHHHHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHH
Confidence 9886432110 0000 0000000 000000111111 1
Q ss_pred cccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc---ccHHHHHHHHHHHHHHhccC
Q 002209 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR---ESIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 824 ~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~---~~~~~~~~~i~~fl~~~l~~ 900 (953)
..+.++++|+||+||++|..|| ++.++++++++... .++++++++++|..... ...+.+.+.+.+||.+++..
T Consensus 245 ~~l~~i~~PvLii~G~~D~ivp--~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~ 320 (330)
T PLN02298 245 KKLKDVSIPFIVLHGSADVVTD--PDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCTG 320 (330)
T ss_pred HhhhhcCCCEEEEecCCCCCCC--HHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhccC
Confidence 2356789999999999999999 99999999887643 35888999999987422 12356788899999999754
Q ss_pred C
Q 002209 901 N 901 (953)
Q Consensus 901 ~ 901 (953)
.
T Consensus 321 ~ 321 (330)
T PLN02298 321 K 321 (330)
T ss_pred C
Confidence 3
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.3e-19 Score=185.43 Aligned_cols=219 Identities=19% Similarity=0.220 Sum_probs=145.9
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChh
Q 002209 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (953)
Q Consensus 651 ~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~ 730 (953)
.+..+.|.|.+ .. +++.|+||++||.+.. ... ....+..|+++||.|+.++++ |+|.+.
T Consensus 11 ~~~~~~~~p~~-~~--~~~~p~vv~~HG~~~~-----------~~~----~~~~~~~l~~~G~~v~~~d~~---g~G~~~ 69 (249)
T PRK10566 11 GIEVLHAFPAG-QR--DTPLPTVFFYHGFTSS-----------KLV----YSYFAVALAQAGFRVIMPDAP---MHGARF 69 (249)
T ss_pred CcceEEEcCCC-CC--CCCCCEEEEeCCCCcc-----------cch----HHHHHHHHHhCCCEEEEecCC---cccccC
Confidence 34567777864 11 2358999999995311 011 123567788999999996664 444321
Q ss_pred hh------hh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEccc--CCCC---
Q 002209 731 AN------DR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG--AYNR--- 796 (953)
Q Consensus 731 ~~------~~---~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~--~~d~--- 796 (953)
.. .. .....++|+.++++++.+++.+|.++|+++|||+||++++.++.++|+ +++++.+.+ .+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~ 148 (249)
T PRK10566 70 SGDEARRLNHFWQILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPW-VKCVASLMGSGYFTSLAR 148 (249)
T ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCC-eeEEEEeeCcHHHHHHHH
Confidence 10 11 123456788888999988888899999999999999999999999876 444443322 1110
Q ss_pred CCCCcCcc-cc--cchhhhhHHHHHhcCcccccCCC-CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc--EEEEEe
Q 002209 797 TLTPFGFQ-NE--DRTLWEATSTYVEMSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL--CRLVIL 870 (953)
Q Consensus 797 ~~~~~~~~-~~--~~~~~~~~~~~~~~sp~~~~~~i-~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~--~~~~~~ 870 (953)
...+.... .. .....+....+..+++...+.++ ++|+|++||++|.+|| +.++.+++++++.+|.+ ++++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~--~~~~~~l~~~l~~~g~~~~~~~~~~ 226 (249)
T PRK10566 149 TLFPPLIPETAAQQAEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVP--AAESLRLQQALRERGLDKNLTCLWE 226 (249)
T ss_pred HhcccccccccccHHHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCC--HHHHHHHHHHHHhcCCCcceEEEec
Confidence 00000000 00 00111111223344555566676 6899999999999999 99999999999988864 788899
Q ss_pred CCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 871 PFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 871 ~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
++++|.+. ...++.+.+||+++|
T Consensus 227 ~~~~H~~~-----~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 227 PGVRHRIT-----PEALDAGVAFFRQHL 249 (249)
T ss_pred CCCCCccC-----HHHHHHHHHHHHhhC
Confidence 99999874 356789999999875
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-19 Score=183.21 Aligned_cols=205 Identities=12% Similarity=0.049 Sum_probs=142.9
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
+...+|..|.+|+..|++.. ..+.++||++||-.. .. .....++.+|+++||+|+. +|.
T Consensus 14 ~~~~dG~~L~Gwl~~P~~~~---~~~~~~vIi~HGf~~------------~~---~~~~~~A~~La~~G~~vLr---fD~ 72 (307)
T PRK13604 14 ICLENGQSIRVWETLPKENS---PKKNNTILIASGFAR------------RM---DHFAGLAEYLSSNGFHVIR---YDS 72 (307)
T ss_pred EEcCCCCEEEEEEEcCcccC---CCCCCEEEEeCCCCC------------Ch---HHHHHHHHHHHHCCCEEEE---ecC
Confidence 56679999999999997522 234789999999411 00 1134567889999999999 554
Q ss_pred CCC-CChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC--
Q 002209 724 IGE-GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL-- 798 (953)
Q Consensus 724 ~G~-G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~-- 798 (953)
+|. |.|.+.. ........|+.++++|+.++. .++|+|+||||||.+++.+|... .++++|+.+|+.+...
T Consensus 73 rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~l~d~l 147 (307)
T PRK13604 73 LHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVNLRDTL 147 (307)
T ss_pred CCCCCCCCCccccCcccccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCcccHHHHH
Confidence 444 5553321 112345799999999998863 46899999999999987666644 3999999999987220
Q ss_pred -----C-----CcCcc-cc----c-----chhhhhHHH---HHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHH
Q 002209 799 -----T-----PFGFQ-NE----D-----RTLWEATST---YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (953)
Q Consensus 799 -----~-----~~~~~-~~----~-----~~~~~~~~~---~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~ 855 (953)
. ++... .. . ..+...... ....+|++.+++++.|+|++||+.|..|| ++.+++++
T Consensus 148 ~~~~~~~~~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp--~~~s~~l~ 225 (307)
T PRK13604 148 ERALGYDYLSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVK--QSEVIDLL 225 (307)
T ss_pred HHhhhcccccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccC--HHHHHHHH
Confidence 0 00000 00 0 011111000 11245667788899999999999999999 99999999
Q ss_pred HHHHhCCCcEEEEEeCCCCccCC
Q 002209 856 NALKGHGALCRLVILPFESHGYA 878 (953)
Q Consensus 856 ~~l~~~g~~~~~~~~~~~~H~~~ 878 (953)
++++. .+++++++||++|.+.
T Consensus 226 e~~~s--~~kkl~~i~Ga~H~l~ 246 (307)
T PRK13604 226 DSIRS--EQCKLYSLIGSSHDLG 246 (307)
T ss_pred HHhcc--CCcEEEEeCCCccccC
Confidence 98764 3579999999999985
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=184.76 Aligned_cols=233 Identities=19% Similarity=0.159 Sum_probs=155.2
Q ss_pred CCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcE
Q 002209 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (953)
Q Consensus 635 ~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (953)
....+..++|.+.+|..|.|++++|.+. ++++|+||.+||.... .........|+.+||+
T Consensus 52 ~~~~vy~v~f~s~~g~~V~g~l~~P~~~----~~~~Pavv~~hGyg~~----------------~~~~~~~~~~a~~G~~ 111 (320)
T PF05448_consen 52 PGVEVYDVSFESFDGSRVYGWLYRPKNA----KGKLPAVVQFHGYGGR----------------SGDPFDLLPWAAAGYA 111 (320)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEES-S----SSSEEEEEEE--TT------------------GGGHHHHHHHHHTT-E
T ss_pred CCEEEEEEEEEccCCCEEEEEEEecCCC----CCCcCEEEEecCCCCC----------------CCCcccccccccCCeE
Confidence 3456788999999999999999999842 3569999999995211 0112234468999999
Q ss_pred EEEcCCCCCCCCC------------------Chh-hhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002209 715 ILGGPTTPIIGEG------------------DEE-ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (953)
Q Consensus 715 V~~~~~~~~~G~G------------------~~~-~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (953)
|+.++.+|..|.. ... ....++...+.|+..++++|.+++.+|++||+++|.|+||.+++.
T Consensus 112 vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~ 191 (320)
T PF05448_consen 112 VLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALA 191 (320)
T ss_dssp EEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHH
T ss_pred EEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHH
Confidence 9997776654311 111 123356678899999999999999999999999999999999999
Q ss_pred HHHhCCCcccEEEEcccCCCCCC-----C--CcCcccccch-------h---hhhHHHHHhcCcccccCCCCCcEEEEEe
Q 002209 776 LLAHAPHLFCCGIARSGAYNRTL-----T--PFGFQNEDRT-------L---WEATSTYVEMSPFMSANKLKKPILLVHG 838 (953)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~d~~~-----~--~~~~~~~~~~-------~---~~~~~~~~~~sp~~~~~~i~~P~Li~~G 838 (953)
+++.+ ++|+++++..|++...- . ...+...... . -+..+.+.-++..+.+.+|++|+|+..|
T Consensus 192 ~aaLd-~rv~~~~~~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~g 270 (320)
T PF05448_consen 192 AAALD-PRVKAAAADVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVG 270 (320)
T ss_dssp HHHHS-ST-SEEEEESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEE
T ss_pred HHHhC-ccccEEEecCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEe
Confidence 99999 47999999988643110 0 0111100000 0 0112334456777889999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
-.|.+|| +......|+++.. ++++++||..+|.... ....++.++||.++
T Consensus 271 l~D~~cP--P~t~fA~yN~i~~---~K~l~vyp~~~He~~~----~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 271 LQDPVCP--PSTQFAAYNAIPG---PKELVVYPEYGHEYGP----EFQEDKQLNFLKEH 320 (320)
T ss_dssp TT-SSS---HHHHHHHHCC--S---SEEEEEETT--SSTTH----HHHHHHHHHHHHH-
T ss_pred cCCCCCC--chhHHHHHhccCC---CeeEEeccCcCCCchh----hHHHHHHHHHHhcC
Confidence 9999998 9888888888865 4899999999997642 23356788998874
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-18 Score=181.77 Aligned_cols=237 Identities=16% Similarity=0.209 Sum_probs=149.9
Q ss_pred eEEEEEEcC-CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHH-HHcCcEEE
Q 002209 639 KELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW-LARGFAIL 716 (953)
Q Consensus 639 ~~~~~~~~~-dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~G~~V~ 716 (953)
.+.+++.+. -+.++.+.+|+|+++.. +++|+|+++||.+... ..+.. ......+ ++.||+|+
T Consensus 13 ~~~~~~~s~~~~~~~~~~v~~P~~~~~---~~~P~vvllHG~~~~~-----------~~~~~--~~~~~~la~~~g~~Vv 76 (275)
T TIGR02821 13 QGFYRHKSETCGVPMTFGVFLPPQAAA---GPVPVLWYLSGLTCTH-----------ENFMI--KAGAQRFAAEHGLALV 76 (275)
T ss_pred EEEEEEeccccCCceEEEEEcCCCccC---CCCCEEEEccCCCCCc-----------cHHHh--hhHHHHHHhhcCcEEE
Confidence 344555443 46678899999987533 2489999999963211 11110 0112234 45799999
Q ss_pred EcCCCCCCCCCCh-------------hh----hhhh--HHHHHHHHHHHHHH-HHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002209 717 GGPTTPIIGEGDE-------------EA----NDRF--VEQLVACAEAAVEE-VVRRGVAHPSKIAVGGHSYGAFMTANL 776 (953)
Q Consensus 717 ~~~~~~~~G~G~~-------------~~----~~~~--~~~~~~D~~~~~~~-l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (953)
+++.. .+|.|.+ +. .... .......+.+.+.. +.+...+|.++++|+|+||||++++.+
T Consensus 77 ~Pd~~-~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~ 155 (275)
T TIGR02821 77 APDTS-PRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVI 155 (275)
T ss_pred EeCCC-CCcCCCCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHH
Confidence 98762 2222211 00 0000 00112222222222 333345788999999999999999999
Q ss_pred HHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCC--CCCcEEEEEeCCCCCCCCch-HHHHH
Q 002209 777 LAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK--LKKPILLVHGEEDNNSGTLT-MQSDR 853 (953)
Q Consensus 777 a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--i~~P~Li~~G~~D~~v~~~~-~~~~~ 853 (953)
+.++|+.|+++++++|+++.....+...........+.+.+...+|...+.+ ...|+|+.||+.|..|+ . .++..
T Consensus 156 a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~--~~~~~~~ 233 (275)
T TIGR02821 156 ALKNPDRFKSVSAFAPIVAPSRCPWGQKAFSAYLGADEAAWRSYDASLLVADGGRHSTILIDQGTADQFLD--EQLRPDA 233 (275)
T ss_pred HHhCcccceEEEEECCccCcccCcchHHHHHHHhcccccchhhcchHHHHhhcccCCCeeEeecCCCcccC--ccccHHH
Confidence 9999999999999999977543222110001111111222334455444333 46799999999999998 7 57889
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
+.+++++.++++++..+||++|.|.. ....++..++|+.++
T Consensus 234 ~~~~l~~~g~~v~~~~~~g~~H~f~~---~~~~~~~~~~~~~~~ 274 (275)
T TIGR02821 234 FEQACRAAGQALTLRRQAGYDHSYYF---IASFIADHLRHHAER 274 (275)
T ss_pred HHHHHHHcCCCeEEEEeCCCCccchh---HHHhHHHHHHHHHhh
Confidence 99999999999999999999999843 345667778887765
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-18 Score=189.13 Aligned_cols=230 Identities=17% Similarity=0.126 Sum_probs=153.4
Q ss_pred CCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEE
Q 002209 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (953)
Q Consensus 636 ~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (953)
....+.++++..+|..+++++++|+. .++.|+||+.||.. +.. ..........|+++||+|
T Consensus 165 ~~~~e~v~i~~~~g~~l~g~l~~P~~-----~~~~P~Vli~gG~~------------~~~--~~~~~~~~~~La~~Gy~v 225 (414)
T PRK05077 165 PGELKELEFPIPGGGPITGFLHLPKG-----DGPFPTVLVCGGLD------------SLQ--TDYYRLFRDYLAPRGIAM 225 (414)
T ss_pred CCceEEEEEEcCCCcEEEEEEEECCC-----CCCccEEEEeCCcc------------cch--hhhHHHHHHHHHhCCCEE
Confidence 34578999998888899999999973 23589988766631 000 001123456788999999
Q ss_pred EEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
+++|+ +|+|.+.... ..........+++++|.+.+.+|.+||+++|+|+||++++.++...|++++++|+++|+++
T Consensus 226 l~~D~---pG~G~s~~~~-~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~ 301 (414)
T PRK05077 226 LTIDM---PSVGFSSKWK-LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVH 301 (414)
T ss_pred EEECC---CCCCCCCCCC-ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccc
Confidence 99555 5666653211 0011222235788999988889999999999999999999999999889999999998865
Q ss_pred CCCCCcCcccc------------cchhhhhHH----HHHhcCcc--c-ccCCCCCcEEEEEeCCCCCCCCchHHHHHHHH
Q 002209 796 RTLTPFGFQNE------------DRTLWEATS----TYVEMSPF--M-SANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (953)
Q Consensus 796 ~~~~~~~~~~~------------~~~~~~~~~----~~~~~sp~--~-~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~ 856 (953)
........... .+......+ .+..++.. . ...++++|+|++||++|.+|| +++++.+.+
T Consensus 302 ~~~~~~~~~~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP--~~~a~~l~~ 379 (414)
T PRK05077 302 TLLTDPKRQQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSP--EEDSRLIAS 379 (414)
T ss_pred hhhcchhhhhhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCC--HHHHHHHHH
Confidence 22111000000 000000111 11112211 1 125689999999999999998 888887655
Q ss_pred HHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 857 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
... ..+++++|+. |.+ +....++..+.+||.++|
T Consensus 380 ~~~----~~~l~~i~~~-~~~---e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 380 SSA----DGKLLEIPFK-PVY---RNFDKALQEISDWLEDRL 413 (414)
T ss_pred hCC----CCeEEEccCC-Ccc---CCHHHHHHHHHHHHHHHh
Confidence 443 3578899986 433 456788999999999876
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-18 Score=181.35 Aligned_cols=239 Identities=21% Similarity=0.232 Sum_probs=149.7
Q ss_pred ceEEEEEEc-CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 638 QKELIKYQR-KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 638 ~~~~~~~~~-~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
..+.+++.+ .-|..+.+.+|+|+. .++ .++|+|+++||+.... ..+... ......++..||+|+
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~-~~~--~~~Pvv~~lHG~~~~~-----------~~~~~~-~~~~~~~~~~g~~Vv 81 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPA-SDS--GKVPVLYWLSGLTCTD-----------ENFIQK-SGAQRAAAARGIALV 81 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCc-ccC--CCCCEEEEecCCCcCh-----------HHHHHh-hhHHHHHhhcCeEEE
Confidence 456666665 356789999999984 222 3599999999963211 111110 112334567899999
Q ss_pred EcCCCCC--C----------CCCChhh----h-----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002209 717 GGPTTPI--I----------GEGDEEA----N-----DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (953)
Q Consensus 717 ~~~~~~~--~----------G~G~~~~----~-----~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (953)
.++.... . |.|.++. . ..+.....+++...++... ..+|.++++|+|+||||++|+.
T Consensus 82 ~pd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~~i~G~S~GG~~a~~ 159 (283)
T PLN02442 82 APDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNF--DQLDTSRASIFGHSMGGHGALT 159 (283)
T ss_pred ecCCCCCCCCCCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHH--HhcCCCceEEEEEChhHHHHHH
Confidence 9775321 1 1111100 0 0112223444444443332 2367889999999999999999
Q ss_pred HHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhc---CcccccCCCCCcEEEEEeCCCCCCCCchH-HH
Q 002209 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEM---SPFMSANKLKKPILLVHGEEDNNSGTLTM-QS 851 (953)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---sp~~~~~~i~~P~Li~~G~~D~~v~~~~~-~~ 851 (953)
++.++|++|+++++.+|+++.....+.............+.+.++ +++..+...++|+|++||++|..|+ .. ++
T Consensus 160 ~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~--~~~~s 237 (283)
T PLN02442 160 IYLKNPDKYKSVSAFAPIANPINCPWGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLK--EQLLP 237 (283)
T ss_pred HHHhCchhEEEEEEECCccCcccCchhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCcccc--ccccH
Confidence 999999999999999998875422221110111111112223333 4445556678999999999999987 53 58
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
+.+++++++.|.++++.++|+++|.+. ....++++.+.|..+++
T Consensus 238 ~~~~~~l~~~g~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~ 281 (283)
T PLN02442 238 ENFEEACKEAGAPVTLRLQPGYDHSYF---FIATFIDDHINHHAQAL 281 (283)
T ss_pred HHHHHHHHHcCCCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999874 22333444445554443
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=178.75 Aligned_cols=201 Identities=22% Similarity=0.234 Sum_probs=142.0
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCC--CCCh
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG--EGDE 729 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G--~G~~ 729 (953)
+.+++..|++ .++.|.||++|+.. | +.......+..|+++||.|+.+|.++..+ ....
T Consensus 1 ~~ay~~~P~~-----~~~~~~Vvv~~d~~------------G---~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~ 60 (218)
T PF01738_consen 1 IDAYVARPEG-----GGPRPAVVVIHDIF------------G---LNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDP 60 (218)
T ss_dssp EEEEEEEETT-----SSSEEEEEEE-BTT------------B---S-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCH
T ss_pred CeEEEEeCCC-----CCCCCEEEEEcCCC------------C---CchHHHHHHHHHHhcCCCEEecccccCCCCCccch
Confidence 4689999986 24589999999842 1 11122345778899999999999887666 1111
Q ss_pred hhhh-h-------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCc
Q 002209 730 EAND-R-------FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF 801 (953)
Q Consensus 730 ~~~~-~-------~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~ 801 (953)
.... . ..+....|+.+++++|.+++.++.+||+++|+|+||.+++.++.+. +.++|+|+..|...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~------ 133 (218)
T PF01738_consen 61 EEAFAAMRELFAPRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP------ 133 (218)
T ss_dssp HCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS------
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC------
Confidence 1111 1 1245678889999999999888899999999999999999998887 67999999888100
Q ss_pred CcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc
Q 002209 802 GFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (953)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (953)
...+.....++++|+|+++|++|..++ .+...++.+++++.+.++++++|||++|+|....
T Consensus 134 -----------------~~~~~~~~~~~~~P~l~~~g~~D~~~~--~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 134 -----------------PPPPLEDAPKIKAPVLILFGENDPFFP--PEEVEALEEALKAAGVDVEVHVYPGAGHGFANPS 194 (218)
T ss_dssp -----------------GGGHHHHGGG--S-EEEEEETT-TTS---HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTT
T ss_pred -----------------CCcchhhhcccCCCEeecCccCCCCCC--hHHHHHHHHHHHhcCCcEEEEECCCCcccccCCC
Confidence 011223345678999999999999998 8888999999999999999999999999996332
Q ss_pred -------cHHHHHHHHHHHHHHhc
Q 002209 882 -------SIMHVLWETDRWLQKYC 898 (953)
Q Consensus 882 -------~~~~~~~~i~~fl~~~l 898 (953)
..+..++++++||++||
T Consensus 195 ~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 195 RPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp STT--HHHHHHHHHHHHHHHCC--
T ss_pred CcccCHHHHHHHHHHHHHHHHhcC
Confidence 34567888999998876
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=185.11 Aligned_cols=233 Identities=15% Similarity=0.129 Sum_probs=157.6
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
+...+.+.+|.++.+..+.|++ ..+.|+||++||.... ...+.......|+++||.|++
T Consensus 62 ~~~~~~~~~g~~l~~~~~~p~~-----~~~~~~iv~lHG~~~~--------------~~~~~~~~~~~l~~~g~~v~~-- 120 (349)
T PLN02385 62 EESYEVNSRGVEIFSKSWLPEN-----SRPKAAVCFCHGYGDT--------------CTFFFEGIARKIASSGYGVFA-- 120 (349)
T ss_pred eeeeEEcCCCCEEEEEEEecCC-----CCCCeEEEEECCCCCc--------------cchHHHHHHHHHHhCCCEEEE--
Confidence 3344556799999999999864 2246899999995210 000112345567889999999
Q ss_pred CCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC
Q 002209 720 TTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (953)
Q Consensus 720 ~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~ 796 (953)
+|.+|+|.+.... ..+...+.|+.+.++.+......+..+++|+||||||.+++.++.++|++++++|+++|+...
T Consensus 121 -~D~~G~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~ 199 (349)
T PLN02385 121 -MDYPGFGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKI 199 (349)
T ss_pred -ecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccc
Confidence 5556888775432 235677889999988887654445568999999999999999999999999999999886431
Q ss_pred CC--CC-c-----------------Cccc-c-cchhhhh-----------------------HHHHHh-cCcccccCCCC
Q 002209 797 TL--TP-F-----------------GFQN-E-DRTLWEA-----------------------TSTYVE-MSPFMSANKLK 830 (953)
Q Consensus 797 ~~--~~-~-----------------~~~~-~-~~~~~~~-----------------------~~~~~~-~sp~~~~~~i~ 830 (953)
.. .+ . .+.. . ....+.+ .+.+.. ......+.+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~ 279 (349)
T PLN02385 200 ADDVVPPPLVLQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVS 279 (349)
T ss_pred cccccCchHHHHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCC
Confidence 10 00 0 0000 0 0000000 000100 01123456789
Q ss_pred CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCccc---HHHHHHHHHHHHHHhc
Q 002209 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES---IMHVLWETDRWLQKYC 898 (953)
Q Consensus 831 ~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~---~~~~~~~i~~fl~~~l 898 (953)
+|+||+||++|.+|| +..++++++.+... .++++++|+++|.+...+. .+.+++.+.+||++++
T Consensus 280 ~P~Lii~G~~D~vv~--~~~~~~l~~~~~~~--~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 280 LPLLILHGEADKVTD--PSVSKFLYEKASSS--DKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred CCEEEEEeCCCCccC--hHHHHHHHHHcCCC--CceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 999999999999998 89999998877543 3588899999998753221 3458889999999886
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=177.82 Aligned_cols=223 Identities=17% Similarity=0.122 Sum_probs=153.5
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
+.+.||..+.+.+|.|.. .+.|+|+++||.... ..........|+++||.|++ +|.
T Consensus 5 ~~~~~g~~l~~~~~~~~~------~~~~~v~llHG~~~~---------------~~~~~~~~~~l~~~g~~via---~D~ 60 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPIT------YPKALVFISHGAGEH---------------SGRYEELAENISSLGILVFS---HDH 60 (276)
T ss_pred eecCCCCEEEEEeccCCC------CCCEEEEEeCCCccc---------------cchHHHHHHHHHhCCCEEEE---ccC
Confidence 344699999999998852 236899999995311 11123456678889999999 566
Q ss_pred CCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC
Q 002209 724 IGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800 (953)
Q Consensus 724 ~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~ 800 (953)
+|+|.+.... ..+...+.|+..+++++.+.. ...+++|+||||||.+++.++.++|++++++|+.+|..+.....
T Consensus 61 ~G~G~S~~~~~~~~~~~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~ 138 (276)
T PHA02857 61 IGHGRSNGEKMMIDDFGVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVP 138 (276)
T ss_pred CCCCCCCCccCCcCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEecccccccccc
Confidence 7888774321 234556788888888876543 23589999999999999999999999999999999865421100
Q ss_pred c-----------Ccccc----cchhh--h---hHHHHH-------------------h-c-CcccccCCCCCcEEEEEeC
Q 002209 801 F-----------GFQNE----DRTLW--E---ATSTYV-------------------E-M-SPFMSANKLKKPILLVHGE 839 (953)
Q Consensus 801 ~-----------~~~~~----~~~~~--~---~~~~~~-------------------~-~-sp~~~~~~i~~P~Li~~G~ 839 (953)
. .+... ....+ . ....+. . . .....+.++++|+|++||+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~ 218 (276)
T PHA02857 139 RLNLLAAKLMGIFYPNKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGT 218 (276)
T ss_pred HHHHHHHHHHHHhCCCCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecC
Confidence 0 00000 00000 0 000000 0 0 0123456789999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc--cHHHHHHHHHHHHHHh
Q 002209 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE--SIMHVLWETDRWLQKY 897 (953)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~--~~~~~~~~i~~fl~~~ 897 (953)
+|..+| +..+.++++.+.. ++++.++++++|...... ..+.+++.+.+||+.+
T Consensus 219 ~D~i~~--~~~~~~l~~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 219 NNEISD--VSGAYYFMQHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred CCCcCC--hHHHHHHHHHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 999998 9999998887744 368999999999886443 3678999999999886
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.6e-17 Score=185.19 Aligned_cols=227 Identities=19% Similarity=0.222 Sum_probs=163.0
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
.||++|. +| ...+.|+.. +..+..|.|||||++|+|... .++...||++++++|+.+.++.....
T Consensus 171 ~l~~~d~--~g--~~~~~l~~~--~~~~~~p~~Spdg~~la~~~~------~~~~~~i~v~d~~~g~~~~~~~~~~~--- 235 (417)
T TIGR02800 171 ELQVADY--DG--ANPQTITRS--REPILSPAWSPDGQKLAYVSF------ESGKPEIYVQDLATGQREKVASFPGM--- 235 (417)
T ss_pred eEEEEcC--CC--CCCEEeecC--CCceecccCCCCCCEEEEEEc------CCCCcEEEEEECCCCCEEEeecCCCC---
Confidence 7899887 33 445666542 235788999999999999764 23457899999999987777654432
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~ 322 (953)
...+.|+|||+.|+|+.. . + +..+||.+++ +
T Consensus 236 --~~~~~~spDg~~l~~~~~--------------------------------------~-~-------~~~~i~~~d~~~ 267 (417)
T TIGR02800 236 --NGAPAFSPDGSKLAVSLS--------------------------------------K-D-------GNPDIYVMDLDG 267 (417)
T ss_pred --ccceEECCCCCEEEEEEC--------------------------------------C-C-------CCccEEEEECCC
Confidence 447899999999988721 0 0 2357999999 7
Q ss_pred CceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCc
Q 002209 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (953)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~ 401 (953)
+..+.++.. .....+.|||||++|+|.+.+.. ..+||++++++++.+.++... ...
T Consensus 268 ~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----------~~~iy~~d~~~~~~~~l~~~~-------------~~~ 324 (417)
T TIGR02800 268 KQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----------SPQIYMMDADGGEVRRLTFRG-------------GYN 324 (417)
T ss_pred CCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCC-------------CCc
Confidence 888888766 45568899999999999885431 237999999887777666432 122
Q ss_pred cceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCce
Q 002209 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (953)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 481 (953)
..+.|||||+.|+|.... .....|+++++ .++..+.++.. .....+.|+|||+.|+|....++. .
T Consensus 325 ~~~~~spdg~~i~~~~~~----------~~~~~i~~~d~---~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~-~ 389 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHRE----------GGGFNIAVMDL---DGGGERVLTDT-GLDESPSFAPNGRMILYATTRGGR-G 389 (417)
T ss_pred cCeEECCCCCEEEEEEcc----------CCceEEEEEeC---CCCCeEEccCC-CCCCCceECCCCCEEEEEEeCCCc-E
Confidence 467899999988887221 12457999996 55555556543 334678999999999998876544 5
Q ss_pred EEEEEcCCCC
Q 002209 482 RTWVISPGSK 491 (953)
Q Consensus 482 ~l~~~d~~~~ 491 (953)
.+++++.++.
T Consensus 390 ~l~~~~~~g~ 399 (417)
T TIGR02800 390 VLGLVSTDGR 399 (417)
T ss_pred EEEEEECCCc
Confidence 7888887663
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-17 Score=179.21 Aligned_cols=332 Identities=14% Similarity=0.085 Sum_probs=194.9
Q ss_pred cCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCcccceEe
Q 002209 117 SPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTW 196 (953)
Q Consensus 117 SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~w 196 (953)
||||+++++..+. ....|-++...+||+|+++ ++.++|... ......+.|
T Consensus 1 S~d~~~~l~~~~~------------------------~~~~r~s~~~~y~i~d~~~----~~~~~l~~~--~~~~~~~~~ 50 (353)
T PF00930_consen 1 SPDGKFVLFATNY------------------------TKQWRHSFKGDYYIYDIET----GEITPLTPP--PPKLQDAKW 50 (353)
T ss_dssp -TTSSEEEEEEEE------------------------EEESSSEEEEEEEEEETTT----TEEEESS-E--ETTBSEEEE
T ss_pred CCCCCeEEEEECc------------------------EEeeeeccceeEEEEecCC----CceEECcCC--cccccccee
Confidence 8999999998763 1223345557899999965 555665432 247899999
Q ss_pred ccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc-ccc------------cccceEEecCCeEEEEEec
Q 002209 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY-LNA------------IFDNFVWVNNSTLLVCTIP 263 (953)
Q Consensus 197 SPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~-~~~------------~~~~~~wspDg~~l~~~~~ 263 (953)
||||++|+|+. +.+||+.+..+++.++||..+... .++ ....+-|||||+.|+|..-
T Consensus 51 sP~g~~~~~v~----------~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 51 SPDGKYIAFVR----------DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp -SSSTEEEEEE----------TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ecCCCeeEEEe----------cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 99999999987 569999999999999999866211 111 1235669999999998822
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCCCcccccccCCCC
Q 002209 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDE 343 (953)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~~~~~~SpDG 343 (953)
+.+. ...+.+.+-..... .-|.=
T Consensus 121 d~~~---------------------------------------------v~~~~~~~~~~~~~------------~yp~~ 143 (353)
T PF00930_consen 121 DERE---------------------------------------------VPEYPLPDYSPPDS------------QYPEV 143 (353)
T ss_dssp E-TT---------------------------------------------S-EEEEEEESSSTE------------SS-EE
T ss_pred CCcC---------------------------------------------CceEEeeccCCccc------------cCCcc
Confidence 1111 11222222211000 00000
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE-EEeccC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW-AETQDG 422 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~-~~~~~~ 422 (953)
..+-|-. ++.. .-.-.++++++++++...+....... ........+.|++|++.+++. .++.
T Consensus 144 ~~~~YPk---~G~~-----np~v~l~v~~~~~~~~~~~~~~~~~~-------~~~~yl~~v~W~~d~~~l~~~~~nR~-- 206 (353)
T PF00930_consen 144 ESIRYPK---AGDP-----NPRVSLFVVDLASGKTTELDPPNSLN-------PQDYYLTRVGWSPDGKRLWVQWLNRD-- 206 (353)
T ss_dssp EEEE--B---TTS--------EEEEEEEESSSTCCCEE---HHHH-------TSSEEEEEEEEEETTEEEEEEEEETT--
T ss_pred cccccCC---CCCc-----CCceEEEEEECCCCcEEEeeeccccC-------CCccCcccceecCCCcEEEEEEcccC--
Confidence 0111110 0000 00126888888877655433221000 001223568999999955554 3332
Q ss_pred CCcccccccCCeEEEEecCCCCCCCceEEe-e-ccccc---CCeeec-cCCceEEEEEecccCceEEEEEcCCCCCCCcE
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILH-K-LDLRY---GGISWC-DDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~-~-~~~~~---~~~~~S-pDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (953)
...-.+.++|+ ..+..+.+. . ....+ ..+.|. +++..+++.+.++ +..+||.++.+++ ..+
T Consensus 207 -------q~~~~l~~~d~---~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~-G~~hly~~~~~~~--~~~ 273 (353)
T PF00930_consen 207 -------QNRLDLVLCDA---STGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD-GYRHLYLYDLDGG--KPR 273 (353)
T ss_dssp -------STEEEEEEEEE---CTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT-SSEEEEEEETTSS--EEE
T ss_pred -------CCEEEEEEEEC---CCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC-CCcEEEEEccccc--cee
Confidence 22345677775 334444432 2 22222 235555 8998888887744 5689999999985 456
Q ss_pred EeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECC-CCceEEEeccCcccc
Q 002209 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN-TGSKERIWESDKEKY 575 (953)
Q Consensus 497 ~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~-~~~~~~l~~~~~~~~ 575 (953)
.++......... +.++++++.|+|..... . ....+||.++++ +++.++||...+.-
T Consensus 274 ~lT~G~~~V~~i------~~~d~~~~~iyf~a~~~--------------~--p~~r~lY~v~~~~~~~~~~LT~~~~~~- 330 (353)
T PF00930_consen 274 QLTSGDWEVTSI------LGWDEDNNRIYFTANGD--------------N--PGERHLYRVSLDSGGEPKCLTCEDGDH- 330 (353)
T ss_dssp ESS-SSS-EEEE------EEEECTSSEEEEEESSG--------------G--TTSBEEEEEETTETTEEEESSTTSSTT-
T ss_pred ccccCceeeccc------ceEcCCCCEEEEEecCC--------------C--CCceEEEEEEeCCCCCeEeccCCCCCc-
Confidence 666554432111 56777777777776432 1 235689999999 99999999988751
Q ss_pred eeeeEeeccCCccccccccCCEEEEEEecCCCCc
Q 002209 576 YETTVALMSDQTEGDLYLNQLKILTSKESKTENT 609 (953)
Q Consensus 576 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~ 609 (953)
...+|||||++++.+++++..|+
T Consensus 331 -----------~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 331 -----------YSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp -----------EEEEE-TTSSEEEEEEESSSSCE
T ss_pred -----------eEEEECCCCCEEEEEEcCCCCCC
Confidence 13579999999999999998874
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7e-17 Score=177.03 Aligned_cols=230 Identities=16% Similarity=0.159 Sum_probs=156.2
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEc
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (953)
.+...+...+|.++++..+.|+. +.++||++||.. .........+..++++||.|++
T Consensus 30 ~~~~~~~~~~g~~l~~~~~~~~~-------~~~~vll~HG~~---------------~~~~~y~~~~~~l~~~g~~v~~- 86 (330)
T PRK10749 30 REEAEFTGVDDIPIRFVRFRAPH-------HDRVVVICPGRI---------------ESYVKYAELAYDLFHLGYDVLI- 86 (330)
T ss_pred ccceEEEcCCCCEEEEEEccCCC-------CCcEEEEECCcc---------------chHHHHHHHHHHHHHCCCeEEE-
Confidence 35566777899999998887641 246899999942 1111122345567889999999
Q ss_pred CCCCCCCCCChhhh--------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEc
Q 002209 719 PTTPIIGEGDEEAN--------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (953)
Q Consensus 719 ~~~~~~G~G~~~~~--------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (953)
+|.+|+|.+... ...+...++|+.++++.+.... +..++.++||||||.+++.++.++|+.++++|+.
T Consensus 87 --~D~~G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~ 162 (330)
T PRK10749 87 --IDHRGQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQPG--PYRKRYALAHSMGGAILTLFLQRHPGVFDAIALC 162 (330)
T ss_pred --EcCCCCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhcC--CCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEE
Confidence 555677776421 1235677888888888775542 3468999999999999999999999999999999
Q ss_pred ccCCCCCCC-C---------------------------cC-cc---c---ccchhh-hhHHHHHhc--------------
Q 002209 791 SGAYNRTLT-P---------------------------FG-FQ---N---EDRTLW-EATSTYVEM-------------- 820 (953)
Q Consensus 791 ~~~~d~~~~-~---------------------------~~-~~---~---~~~~~~-~~~~~~~~~-------------- 820 (953)
+|....... + +. .. . ...... ...+.+...
T Consensus 163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
T PRK10749 163 APMFGIVLPLPSWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVR 242 (330)
T ss_pred CchhccCCCCCcHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHH
Confidence 886431100 0 00 00 0 000000 000111100
Q ss_pred -------CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCC---CcEEEEEeCCCCccCCCccc--HHHHHH
Q 002209 821 -------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG---ALCRLVILPFESHGYAARES--IMHVLW 888 (953)
Q Consensus 821 -------sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~H~~~~~~~--~~~~~~ 888 (953)
.....+.+++.|+||+||++|.+|+ +..+.++++.++..+ ..+++++||+++|....... .+.+++
T Consensus 243 ~~~~~~~~~~~~~~~i~~P~Lii~G~~D~vv~--~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~ 320 (330)
T PRK10749 243 ESILAGEQVLAGAGDITTPLLLLQAEEERVVD--NRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALN 320 (330)
T ss_pred HHHHHHHHHHhhccCCCCCEEEEEeCCCeeeC--HHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHH
Confidence 1123456789999999999999999 898999999987654 34689999999998764433 677889
Q ss_pred HHHHHHHHh
Q 002209 889 ETDRWLQKY 897 (953)
Q Consensus 889 ~i~~fl~~~ 897 (953)
.|.+||+++
T Consensus 321 ~i~~fl~~~ 329 (330)
T PRK10749 321 AIVDFFNRH 329 (330)
T ss_pred HHHHHHhhc
Confidence 999999874
|
|
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=164.00 Aligned_cols=219 Identities=17% Similarity=0.194 Sum_probs=160.8
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAIL 716 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~ 716 (953)
.++.+..++..|..+.+..+.|+.. ..++++|.||.....+ | .......|.. .++.|+
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~------~~~~lly~hGNa~Dlg----q-----------~~~~~~~l~~~ln~nv~ 92 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA------AHPTLLYSHGNAADLG----Q-----------MVELFKELSIFLNCNVV 92 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc------cceEEEEcCCcccchH----H-----------HHHHHHHHhhcccceEE
Confidence 5677778888899999999988742 3689999999521100 0 0111222332 489999
Q ss_pred EcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC
Q 002209 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~ 796 (953)
. +|+.|+|.+.+... -...++|+.++.+||++... ..++|+|+|+|+|...++.+|++.| .+|+|+++|+.+.
T Consensus 93 ~---~DYSGyG~S~G~ps-E~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~ 165 (258)
T KOG1552|consen 93 S---YDYSGYGRSSGKPS-ERNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSG 165 (258)
T ss_pred E---EecccccccCCCcc-cccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhh
Confidence 9 67789998865432 24789999999999999875 6789999999999999999999997 9999999998773
Q ss_pred CCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCcc
Q 002209 797 TLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876 (953)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 876 (953)
.-.- +.....+.| +..+.-++.+..+++|+||+||++|++|+ ..++.++|+.++.+ ++..+..|+||.
T Consensus 166 ~rv~--~~~~~~~~~-----~d~f~~i~kI~~i~~PVLiiHgtdDevv~--~sHg~~Lye~~k~~---~epl~v~g~gH~ 233 (258)
T KOG1552|consen 166 MRVA--FPDTKTTYC-----FDAFPNIEKISKITCPVLIIHGTDDEVVD--FSHGKALYERCKEK---VEPLWVKGAGHN 233 (258)
T ss_pred hhhh--ccCcceEEe-----eccccccCcceeccCCEEEEecccCceec--ccccHHHHHhcccc---CCCcEEecCCCc
Confidence 2111 111111112 11223367788889999999999999999 99999999999876 678889999997
Q ss_pred CCCcccHHHHHHHHHHHHHHhc
Q 002209 877 YAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 877 ~~~~~~~~~~~~~i~~fl~~~l 898 (953)
.. +...++.+.+..|+..-+
T Consensus 234 ~~--~~~~~yi~~l~~f~~~~~ 253 (258)
T KOG1552|consen 234 DI--ELYPEYIEHLRRFISSVL 253 (258)
T ss_pred cc--ccCHHHHHHHHHHHHHhc
Confidence 53 334566777777776543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-16 Score=180.46 Aligned_cols=252 Identities=16% Similarity=0.161 Sum_probs=178.7
Q ss_pred CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCC
Q 002209 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLG 278 (953)
Q Consensus 199 DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 278 (953)
.+.+|+|.+... .++..+||++|.+++..++++..... +..+.|||||+.|+|....
T Consensus 154 ~~~~~~~~~~~~----~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~~Spdg~~la~~~~~-------------- 210 (417)
T TIGR02800 154 FSTRIAYVSKSG----KSRRYELQVADYDGANPQTITRSREP-----ILSPAWSPDGQKLAYVSFE-------------- 210 (417)
T ss_pred cCCEEEEEEEeC----CCCcceEEEEcCCCCCCEEeecCCCc-----eecccCCCCCCEEEEEEcC--------------
Confidence 467899987532 35678999999998888888875532 5588999999999987210
Q ss_pred CceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCcc
Q 002209 279 PKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYS 356 (953)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~ 356 (953)
. +..+|+++++ +|+.+.+... +....+.|||||+.|+|+....
T Consensus 211 ------------------------~--------~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~--- 255 (417)
T TIGR02800 211 ------------------------S--------GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD--- 255 (417)
T ss_pred ------------------------C--------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCC---
Confidence 0 2357999999 8877776654 5566799999999999986332
Q ss_pred ccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEE
Q 002209 357 FIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIY 436 (953)
Q Consensus 357 ~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~ 436 (953)
...+|++++++++..+.++..... ...+.|+|||+.|+|..+. .....||
T Consensus 256 -------~~~~i~~~d~~~~~~~~l~~~~~~-------------~~~~~~s~dg~~l~~~s~~----------~g~~~iy 305 (417)
T TIGR02800 256 -------GNPDIYVMDLDGKQLTRLTNGPGI-------------DTEPSWSPDGKSIAFTSDR----------GGSPQIY 305 (417)
T ss_pred -------CCccEEEEECCCCCEEECCCCCCC-------------CCCEEECCCCCEEEEEECC----------CCCceEE
Confidence 123799999998877777654321 1357899999999887322 2234799
Q ss_pred EEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeE
Q 002209 437 TQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMR 516 (953)
Q Consensus 437 ~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 516 (953)
++++ .+++.+.++........+.|||||+.|++..... ...+|+.++++++ ..+.++.... . .. +.
T Consensus 306 ~~d~---~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~-~~~~i~~~d~~~~--~~~~l~~~~~-~-----~~--p~ 371 (417)
T TIGR02800 306 MMDA---DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG-GGFNIAVMDLDGG--GERVLTDTGL-D-----ES--PS 371 (417)
T ss_pred EEEC---CCCCEEEeecCCCCccCeEECCCCCEEEEEEccC-CceEEEEEeCCCC--CeEEccCCCC-C-----CC--ce
Confidence 9996 6667777765555566789999999999987654 3468999999874 3444443211 1 12 56
Q ss_pred eccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEecc
Q 002209 517 RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570 (953)
Q Consensus 517 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~ 570 (953)
|+|||++|+|..... ....|++++.+++..+.++..
T Consensus 372 ~spdg~~l~~~~~~~------------------~~~~l~~~~~~g~~~~~~~~~ 407 (417)
T TIGR02800 372 FAPNGRMILYATTRG------------------GRGVLGLVSTDGRFRARLPLG 407 (417)
T ss_pred ECCCCCEEEEEEeCC------------------CcEEEEEEECCCceeeECCCC
Confidence 999999999987532 123578888777666666544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.7e-17 Score=164.22 Aligned_cols=212 Identities=20% Similarity=0.187 Sum_probs=164.1
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
+.+++...+ .++.+++..|.+ +++.|+||++|+-.. .+. .-...++.||.+||.|+.++
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~-----~~~~P~VIv~hei~G------------l~~---~i~~~a~rlA~~Gy~v~~Pd 61 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAG-----AGGFPGVIVLHEIFG------------LNP---HIRDVARRLAKAGYVVLAPD 61 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCc-----CCCCCEEEEEecccC------------Cch---HHHHHHHHHHhCCcEEEech
Confidence 456777666 899999999986 344699999998421 111 12345778999999999988
Q ss_pred CCCCCCCCChhh--h----h-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEE
Q 002209 720 TTPIIGEGDEEA--N----D-----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (953)
Q Consensus 720 ~~~~~G~G~~~~--~----~-----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (953)
.+...|...... . . ........|+.++++||.+++.++.++|+++|+||||.+++.++.+.| .++|+|
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v 140 (236)
T COG0412 62 LYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAV 140 (236)
T ss_pred hhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEE
Confidence 876555333222 1 0 112567899999999999998899999999999999999999999986 799999
Q ss_pred EcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002209 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (953)
Q Consensus 789 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (953)
+..|..-. .......++++|+|+.+|+.|..+| ...-..+.+++..+++.+++.
T Consensus 141 ~fyg~~~~------------------------~~~~~~~~~~~pvl~~~~~~D~~~p--~~~~~~~~~~~~~~~~~~~~~ 194 (236)
T COG0412 141 AFYGGLIA------------------------DDTADAPKIKVPVLLHLAGEDPYIP--AADVDALAAALEDAGVKVDLE 194 (236)
T ss_pred EecCCCCC------------------------CcccccccccCcEEEEecccCCCCC--hhHHHHHHHHHHhcCCCeeEE
Confidence 98874210 0111156789999999999999998 888889999999998899999
Q ss_pred EeCCCCccCCCcc----------cHHHHHHHHHHHHHHhcc
Q 002209 869 ILPFESHGYAARE----------SIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 869 ~~~~~~H~~~~~~----------~~~~~~~~i~~fl~~~l~ 899 (953)
+|+++.|+|.... ..+..++++.+||.+++.
T Consensus 195 ~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 195 IYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred EeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999997431 235678899999999874
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.2e-17 Score=162.16 Aligned_cols=325 Identities=16% Similarity=0.235 Sum_probs=198.1
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
+-.++|||||++||..+.+ +.+++||+.+. .+....++ +..+
T Consensus 118 Vl~~~fsp~g~~l~tGsGD---------------------------------~TvR~WD~~Te---Tp~~t~Kg--H~~W 159 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGD---------------------------------TTVRLWDLDTE---TPLFTCKG--HKNW 159 (480)
T ss_pred EEEEEecCCCceEEecCCC---------------------------------ceEEeeccCCC---CcceeecC--CccE
Confidence 4567899999999988765 36789998541 12222222 2248
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce--eecccCCCccccccccceEEe-----cCCeEEEEEec
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIYLNAIFDNFVWV-----NNSTLLVCTIP 263 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~ws-----pDg~~l~~~~~ 263 (953)
+..++|||||++||.. ..+..|.++|+.+|+. +.|..+... +..++|- |+.++|+.+
T Consensus 160 VlcvawsPDgk~iASG---------~~dg~I~lwdpktg~~~g~~l~gH~K~-----It~Lawep~hl~p~~r~las~-- 223 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASG---------SKDGSIRLWDPKTGQQIGRALRGHKKW-----ITALAWEPLHLVPPCRRLASS-- 223 (480)
T ss_pred EEEEEECCCcchhhcc---------ccCCeEEEecCCCCCcccccccCcccc-----eeEEeecccccCCCccceecc--
Confidence 9999999999999984 3577899999988765 344443332 6678885 555655533
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC-CcccccccC
Q 002209 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPS 340 (953)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~S 340 (953)
. ..+.+.++|+ .| ....+... ..++.+.|-
T Consensus 224 --------------------------------------s---------kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG 256 (480)
T KOG0271|consen 224 --------------------------------------S---------KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG 256 (480)
T ss_pred --------------------------------------c---------CCCCEEEEEccCceEEEEeccCccceEEEEEc
Confidence 1 2245556677 44 34445544 778888897
Q ss_pred CCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCc-ccCCccccccccCccceeeccCCCCceEEEE
Q 002209 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLA-EDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (953)
Q Consensus 341 pDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~ 418 (953)
-+| ++|+... .+.|.+|+.. |.-.+.|..+..- ..+....+ .-.|.-+|.|-|+..--..+
T Consensus 257 G~g--liySgS~------------DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTd---y~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 257 GEG--LIYSGSQ------------DRTIKVWRALDGKLCRELKGHAHWVNHLALSTD---YVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred CCc--eEEecCC------------CceEEEEEccchhHHHhhcccchheeeeeccch---hhhhccccccccccCCChHH
Confidence 665 6666532 3489999886 4444555443211 00000000 00122234444432110000
Q ss_pred ------------eccCCCcccccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCceEEEEEecccCceEEEE
Q 002209 419 ------------TQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (953)
Q Consensus 419 ------------~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 485 (953)
..+.+...+..+....+++|+ |....++ .+.+.+..-++.+.|||||++|+.++.++.. +||.
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~--p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSV--kLW~ 395 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSDDFTLFLWN--PFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSV--KLWD 395 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecCCceEEEec--ccccccchhhhhchhhheeeEEECCCccEEEEeecccce--eeee
Confidence 001111112234456889998 4554433 3567788888999999999999999888754 6775
Q ss_pred EcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceE
Q 002209 486 ISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (953)
Q Consensus 486 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~ 565 (953)
.+ +| +....+..+...+|. ++||.|.+.|+..+.+. .|.+||+.+++..
T Consensus 396 g~--tG--k~lasfRGHv~~VYq------vawsaDsRLlVS~SkDs---------------------TLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 396 GR--TG--KFLASFRGHVAAVYQ------VAWSADSRLLVSGSKDS---------------------TLKVWDVRTKKLK 444 (480)
T ss_pred CC--Cc--chhhhhhhccceeEE------EEeccCccEEEEcCCCc---------------------eEEEEEeeeeeec
Confidence 43 32 444456667777887 89999999888776432 4999999988876
Q ss_pred EEeccCcccceeeeEeeccCCccccccccCCEEE
Q 002209 566 RIWESDKEKYYETTVALMSDQTEGDLYLNQLKIL 599 (953)
Q Consensus 566 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 599 (953)
.=..+.++ .+. ...|||||++++
T Consensus 445 ~DLpGh~D----EVf-------~vDwspDG~rV~ 467 (480)
T KOG0271|consen 445 QDLPGHAD----EVF-------AVDWSPDGQRVA 467 (480)
T ss_pred ccCCCCCc----eEE-------EEEecCCCceee
Confidence 54332222 011 146899998765
|
|
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=155.55 Aligned_cols=237 Identities=17% Similarity=0.185 Sum_probs=172.8
Q ss_pred CCCCcCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHH-HHH
Q 002209 630 PYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV-LLW 708 (953)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l 708 (953)
+.|....++-|++++.+.|..++++++.+-++ ..|+++++||...+ + +..-..+ ..+
T Consensus 45 ptP~~~n~pye~i~l~T~D~vtL~a~~~~~E~-------S~pTlLyfh~NAGN-------m--------Ghr~~i~~~fy 102 (300)
T KOG4391|consen 45 PTPKEFNMPYERIELRTRDKVTLDAYLMLSES-------SRPTLLYFHANAGN-------M--------GHRLPIARVFY 102 (300)
T ss_pred CCccccCCCceEEEEEcCcceeEeeeeecccC-------CCceEEEEccCCCc-------c--------cchhhHHHHHH
Confidence 44566678889999999999999999998332 37999999995311 1 1111112 234
Q ss_pred HHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEE
Q 002209 709 LARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (953)
Q Consensus 709 a~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (953)
.+.++.|+.. .++|+|.+.+.. .-.....|..++++||..++..|..+|.++|.|.||..|+.+|++..+++.|+|
T Consensus 103 ~~l~mnv~iv---sYRGYG~S~Gsp-sE~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~i 178 (300)
T KOG4391|consen 103 VNLKMNVLIV---SYRGYGKSEGSP-SEEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAII 178 (300)
T ss_pred HHcCceEEEE---EeeccccCCCCc-cccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeee
Confidence 6789999994 457888886643 235677899999999999999999999999999999999999999989999999
Q ss_pred EcccCCCC-C-CCCcCcccc--cchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc
Q 002209 789 ARSGAYNR-T-LTPFGFQNE--DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (953)
Q Consensus 789 ~~~~~~d~-~-~~~~~~~~~--~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (953)
...-+.+. . ..+..+... .-..|--... ++-...+.+.+.|.|++.|..|..|| +-+.+++|+..... .
T Consensus 179 vENTF~SIp~~~i~~v~p~~~k~i~~lc~kn~---~~S~~ki~~~~~P~LFiSGlkDelVP--P~~Mr~Ly~~c~S~--~ 251 (300)
T KOG4391|consen 179 VENTFLSIPHMAIPLVFPFPMKYIPLLCYKNK---WLSYRKIGQCRMPFLFISGLKDELVP--PVMMRQLYELCPSR--T 251 (300)
T ss_pred eechhccchhhhhheeccchhhHHHHHHHHhh---hcchhhhccccCceEEeecCccccCC--cHHHHHHHHhCchh--h
Confidence 88766553 1 122222111 1111221112 23334455778999999999999999 99999999988765 3
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccCC
Q 002209 865 CRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 865 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (953)
+++..||++.|+-+... .-.++.|.+|+.+..+..
T Consensus 252 Krl~eFP~gtHNDT~i~--dGYfq~i~dFlaE~~~~~ 286 (300)
T KOG4391|consen 252 KRLAEFPDGTHNDTWIC--DGYFQAIEDFLAEVVKSS 286 (300)
T ss_pred hhheeCCCCccCceEEe--ccHHHHHHHHHHHhccCC
Confidence 58899999999865432 346788999999876543
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=176.95 Aligned_cols=226 Identities=18% Similarity=0.177 Sum_probs=160.5
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
...|.|||||++++|.... ..+.. .++++++.. ++...+... ...
T Consensus 195 ~~~p~ws~~~~~~~y~~f~-----------------------~~~~~------~i~~~~l~~----g~~~~i~~~--~g~ 239 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFE-----------------------LGGCP------RIYYLDLNT----GKRPVILNF--NGN 239 (425)
T ss_pred eeccccCcCCCceEEEEEe-----------------------cCCCc------eEEEEeccC----Cccceeecc--CCc
Confidence 4468999999999999763 11113 689999855 444444333 346
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
...|+|||||++|+|+.. +++..+||++|+.++..++||..... -..+.|+|||+.|+|.+..
T Consensus 240 ~~~P~fspDG~~l~f~~~------rdg~~~iy~~dl~~~~~~~Lt~~~gi-----~~~Ps~spdG~~ivf~Sdr------ 302 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSS------RDGSPDIYLMDLDGKNLPRLTNGFGI-----NTSPSWSPDGSKIVFTSDR------ 302 (425)
T ss_pred cCCccCCCCCCEEEEEEC------CCCCccEEEEcCCCCcceecccCCcc-----ccCccCCCCCCEEEEEeCC------
Confidence 789999999999999875 56899999999999998888876653 3389999999999998221
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEE
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILI 348 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~ 348 (953)
. +..+||++++ .+..++++.. +....+.|||||++|+|
T Consensus 303 --------------------------------~--------G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 303 --------------------------------G--------GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred --------------------------------C--------CCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEE
Confidence 0 4568999999 6678888887 66669999999999999
Q ss_pred EEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
.+.... ..+|.+.++..+. .+.++..... ..+.|+|||+.+.|....
T Consensus 343 ~~~~~g----------~~~i~~~~~~~~~~~~~lt~~~~~--------------e~ps~~~ng~~i~~~s~~-------- 390 (425)
T COG0823 343 ESSSGG----------QWDIDKNDLASGGKIRILTSTYLN--------------ESPSWAPNGRMIMFSSGQ-------- 390 (425)
T ss_pred EeccCC----------ceeeEEeccCCCCcEEEccccccC--------------CCCCcCCCCceEEEeccC--------
Confidence 983311 1267777776444 5555553322 356799999999988222
Q ss_pred ccccCCeEEEEecCCCCCCCceEEeecccccCCeeecc
Q 002209 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD 465 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~Sp 465 (953)
.....++.+.. ++.....+....+....++|+|
T Consensus 391 --~~~~~l~~~s~---~g~~~~~~~~~~~~~~~p~w~~ 423 (425)
T COG0823 391 --GGGSVLSLVSL---DGRVSRPLPLADGDVRVPAWSP 423 (425)
T ss_pred --CCCceEEEeec---cceeEEEEeccCcceecccccC
Confidence 12445666663 5544444544455666677765
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-16 Score=169.73 Aligned_cols=231 Identities=17% Similarity=0.168 Sum_probs=157.5
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAIL 716 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~ 716 (953)
..+.++++..+| .+.+.+|.|.. .+.|+|||+|||.+.. ++...+ ......|+. .|+.|+
T Consensus 56 ~~~~~~i~~~~g-~i~~~~y~P~~------~~~p~vv~~HGGg~~~--------g~~~~~----~~~~~~la~~~g~~Vv 116 (318)
T PRK10162 56 ATRAYMVPTPYG-QVETRLYYPQP------DSQATLFYLHGGGFIL--------GNLDTH----DRIMRLLASYSGCTVI 116 (318)
T ss_pred eEEEEEEecCCC-ceEEEEECCCC------CCCCEEEEEeCCcccC--------CCchhh----hHHHHHHHHHcCCEEE
Confidence 467788887777 59999999953 1269999999985432 222222 134556666 599999
Q ss_pred EcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC------CCcccEE
Q 002209 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA------PHLFCCG 787 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~------p~~~~a~ 787 (953)
.++|+.... ..++..++|+.++++|+.++ ..+|+++|+|+|+|+||++++.++.+. +..++++
T Consensus 117 ~vdYrlape--------~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~ 188 (318)
T PRK10162 117 GIDYTLSPE--------ARFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGV 188 (318)
T ss_pred EecCCCCCC--------CCCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhhe
Confidence 988864322 12345678999999998764 347899999999999999999998753 3568999
Q ss_pred EEcccCCCCCCCCcC--ccccc-chhhhhHHH----HH-----hcCccccc--CCC---CCcEEEEEeCCCCCCCCchHH
Q 002209 788 IARSGAYNRTLTPFG--FQNED-RTLWEATST----YV-----EMSPFMSA--NKL---KKPILLVHGEEDNNSGTLTMQ 850 (953)
Q Consensus 788 v~~~~~~d~~~~~~~--~~~~~-~~~~~~~~~----~~-----~~sp~~~~--~~i---~~P~Li~~G~~D~~v~~~~~~ 850 (953)
++++|+++....... +.... .......+. |. ..+|.... ..+ -.|+||++|+.|.. ..+
T Consensus 189 vl~~p~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L----~de 264 (318)
T PRK10162 189 LLWYGLYGLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPL----LDD 264 (318)
T ss_pred EEECCccCCCCChhHHHhCCCccccCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcC----cCh
Confidence 999998774321100 00000 000001111 10 11232111 223 36999999999987 468
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHhcc
Q 002209 851 SDRFFNALKGHGALCRLVILPFESHGYAAR----ESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~fl~~~l~ 899 (953)
++.+.++|++.|+++++++++|+.|+|... +.....++.+.+||.++++
T Consensus 265 ~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 265 SRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998532 2345778889999998764
|
|
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.3e-16 Score=170.63 Aligned_cols=231 Identities=15% Similarity=0.128 Sum_probs=157.8
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEc
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (953)
.....+...++..+++..|.|.. ..+.|+||++||.... .......+..|+++||.|++
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~-----~~~~~~Vl~lHG~~~~---------------~~~~~~~a~~L~~~Gy~V~~- 168 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAA-----GEMRGILIIIHGLNEH---------------SGRYLHFAKQLTSCGFGVYA- 168 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCC-----CCCceEEEEECCchHH---------------HHHHHHHHHHHHHCCCEEEE-
Confidence 45566777888899999998853 1236899999995211 11112456678889999999
Q ss_pred CCCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC---cccEEEEccc
Q 002209 719 PTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH---LFCCGIARSG 792 (953)
Q Consensus 719 ~~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~~ 792 (953)
++.+|+|.+.... .......+|+.++++++.... +..++.|+||||||.+++.++. +|+ +++++|+.+|
T Consensus 169 --~D~rGhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP 243 (395)
T PLN02652 169 --MDWIGHGGSDGLHGYVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSP 243 (395)
T ss_pred --eCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECc
Confidence 5556777765432 235667889999999987652 2347999999999999987764 553 7999999988
Q ss_pred CCCCCCC---------------C-cCcccc--c-chhhhhH----HHH------------------Hhc-C-cccccCCC
Q 002209 793 AYNRTLT---------------P-FGFQNE--D-RTLWEAT----STY------------------VEM-S-PFMSANKL 829 (953)
Q Consensus 793 ~~d~~~~---------------~-~~~~~~--~-~~~~~~~----~~~------------------~~~-s-p~~~~~~i 829 (953)
....... + +.+... . .....++ ..+ .+. . ....+.++
T Consensus 244 ~l~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I 323 (395)
T PLN02652 244 ALRVKPAHPIVGAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSV 323 (395)
T ss_pred ccccccchHHHHHHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccC
Confidence 6542210 0 000000 0 0000000 000 000 0 12345678
Q ss_pred CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 830 ~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
++|+|++||++|.++| ++.++++++++... .+++++||+++|........+.+++.+.+||+.++.
T Consensus 324 ~vPvLIi~G~~D~vvp--~~~a~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 324 TVPFMVLHGTADRVTD--PLASQDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred CCCEEEEEeCCCCCCC--HHHHHHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999998 99999999987543 357788999999976555788999999999999874
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.1e-15 Score=151.32 Aligned_cols=126 Identities=17% Similarity=0.102 Sum_probs=100.0
Q ss_pred ceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCC
Q 002209 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p 391 (953)
..|-+++. +|+++++..+ +.+..+..|||||+++++..+ .+||++|++++.++.+.....
T Consensus 382 D~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr-------------~el~vididngnv~~idkS~~----- 443 (668)
T COG4946 382 DKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDR-------------FELWVIDIDNGNVRLIDKSEY----- 443 (668)
T ss_pred ceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCc-------------eEEEEEEecCCCeeEeccccc-----
Confidence 46888999 8898999888 999999999999999887633 389999999988887665221
Q ss_pred ccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEE
Q 002209 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALV 471 (953)
Q Consensus 392 ~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~ 471 (953)
+-+..+.|+|+++.|+|... ++ --...|.++|+ .+++...+|.......+++|.|||++|+
T Consensus 444 -------~lItdf~~~~nsr~iAYafP--~g-------y~tq~Iklydm---~~~Kiy~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 444 -------GLITDFDWHPNSRWIAYAFP--EG-------YYTQSIKLYDM---DGGKIYDVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred -------ceeEEEEEcCCceeEEEecC--cc-------eeeeeEEEEec---CCCeEEEecCCcccccCcccCCCCcEEE
Confidence 22357899999999999822 11 12346888886 7888888888877778899999999999
Q ss_pred EEEec
Q 002209 472 YESWY 476 (953)
Q Consensus 472 ~~~~~ 476 (953)
|.+.+
T Consensus 505 fLs~R 509 (668)
T COG4946 505 FLSAR 509 (668)
T ss_pred EEecc
Confidence 98854
|
|
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=153.79 Aligned_cols=232 Identities=16% Similarity=0.132 Sum_probs=160.4
Q ss_pred CCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEE
Q 002209 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (953)
Q Consensus 636 ~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (953)
..++-.++|++.+|.+|.+|+.+|..- +++.|+||..||.....+ -+.....|+..||+|
T Consensus 53 ~ve~ydvTf~g~~g~rI~gwlvlP~~~----~~~~P~vV~fhGY~g~~g----------------~~~~~l~wa~~Gyav 112 (321)
T COG3458 53 RVEVYDVTFTGYGGARIKGWLVLPRHE----KGKLPAVVQFHGYGGRGG----------------EWHDMLHWAVAGYAV 112 (321)
T ss_pred ceEEEEEEEeccCCceEEEEEEeeccc----CCccceEEEEeeccCCCC----------------CccccccccccceeE
Confidence 345678999999999999999999752 356999999999421111 012234578999999
Q ss_pred EEcCCCCCCCCCC----hhh----------------hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002209 716 LGGPTTPIIGEGD----EEA----------------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (953)
Q Consensus 716 ~~~~~~~~~G~G~----~~~----------------~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (953)
+.++.+|..+... ... +.-++...+.|+..+++-+...+.+|.+||++.|.|.||.+++.
T Consensus 113 f~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglala 192 (321)
T COG3458 113 FVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALA 192 (321)
T ss_pred EEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhh
Confidence 9977666544311 000 01124456899999999999999999999999999999999999
Q ss_pred HHHhCCCcccEEEEcccCCCCCCCCcCcccc------cchh-------hhhHHHHHhcCcccccCCCCCcEEEEEeCCCC
Q 002209 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNE------DRTL-------WEATSTYVEMSPFMSANKLKKPILLVHGEEDN 842 (953)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~------~~~~-------~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~ 842 (953)
+++.. .++|++++..|+....---+....+ .... -+-.+.+.-++-.+.+.+++.|+|+..|-.|.
T Consensus 193 aaal~-~rik~~~~~~Pfl~df~r~i~~~~~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~ 271 (321)
T COG3458 193 AAALD-PRIKAVVADYPFLSDFPRAIELATEGPYDEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDP 271 (321)
T ss_pred hhhcC-hhhhcccccccccccchhheeecccCcHHHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCC
Confidence 99998 4799999999976521100000000 0000 01112223334456778899999999999999
Q ss_pred CCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 843 NSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 843 ~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
+|| +.-....|+++... +++.+||--+|.-.. ....++++.|+..-
T Consensus 272 vcp--PstqFA~yN~l~~~---K~i~iy~~~aHe~~p----~~~~~~~~~~l~~l 317 (321)
T COG3458 272 VCP--PSTQFAAYNALTTS---KTIEIYPYFAHEGGP----GFQSRQQVHFLKIL 317 (321)
T ss_pred CCC--ChhhHHHhhcccCC---ceEEEeeccccccCc----chhHHHHHHHHHhh
Confidence 998 88777888887654 677888877786532 22344567777653
|
|
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-15 Score=177.08 Aligned_cols=193 Identities=20% Similarity=0.224 Sum_probs=144.6
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhh-hhHHHHHHHHHHHHHHHHHc---------------CCCCCCcEEEEEe
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVVRR---------------GVAHPSKIAVGGH 766 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~~~~~l~~~---------------~~~d~~~i~l~G~ 766 (953)
....+|+.+||+|+..+ .+|.|.|.+.. .+...+..|..++|+||..+ ++. ..+|+++|.
T Consensus 270 ~~~~~~~~rGYaVV~~D---~RGtg~SeG~~~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~Ws-nGkVGm~G~ 345 (767)
T PRK05371 270 SLNDYFLPRGFAVVYVS---GIGTRGSDGCPTTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWS-NGKVAMTGK 345 (767)
T ss_pred hHHHHHHhCCeEEEEEc---CCCCCCCCCcCccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCC-CCeeEEEEE
Confidence 44578999999999944 45666665542 33478899999999999853 333 469999999
Q ss_pred ChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC---------CcCccccc---------------------chhhh----
Q 002209 767 SYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---------PFGFQNED---------------------RTLWE---- 812 (953)
Q Consensus 767 S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~---------~~~~~~~~---------------------~~~~~---- 812 (953)
||||++++.+|+..|+.++|+|+.+++.++... +.++..+. ...++
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 425 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLA 425 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHh
Confidence 999999999999988899999999988764210 00110000 00000
Q ss_pred ------------hHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc
Q 002209 813 ------------ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880 (953)
Q Consensus 813 ------------~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 880 (953)
..+.|...+++.+++++++|+|++||..|.+|+ +.++.++|+++++.+++.++.+.++ +|.....
T Consensus 426 ~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~--~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~ 502 (767)
T PRK05371 426 ELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVK--PKQVYQWWDALPENGVPKKLFLHQG-GHVYPNN 502 (767)
T ss_pred hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCC--hHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCc
Confidence 012234456777889999999999999999998 8999999999999899999987776 7976544
Q ss_pred ccHHHHHHHHHHHHHHhccCCC
Q 002209 881 ESIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 881 ~~~~~~~~~i~~fl~~~l~~~~ 902 (953)
.....+.+.+.+||++||+...
T Consensus 503 ~~~~d~~e~~~~Wfd~~LkG~~ 524 (767)
T PRK05371 503 WQSIDFRDTMNAWFTHKLLGID 524 (767)
T ss_pred hhHHHHHHHHHHHHHhccccCC
Confidence 4456778899999999998654
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-15 Score=158.14 Aligned_cols=229 Identities=19% Similarity=0.176 Sum_probs=160.1
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
....+.+.||..+....+.++.. +..+||++||.. .+...+...+..|.++||.|++
T Consensus 10 ~~~~~~~~d~~~~~~~~~~~~~~------~~g~Vvl~HG~~---------------Eh~~ry~~la~~l~~~G~~V~~-- 66 (298)
T COG2267 10 TEGYFTGADGTRLRYRTWAAPEP------PKGVVVLVHGLG---------------EHSGRYEELADDLAARGFDVYA-- 66 (298)
T ss_pred ccceeecCCCceEEEEeecCCCC------CCcEEEEecCch---------------HHHHHHHHHHHHHHhCCCEEEE--
Confidence 44567778999999999987641 237899999952 2333344566778999999999
Q ss_pred CCCCCCCCChh-hh---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 720 TTPIIGEGDEE-AN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 720 ~~~~~G~G~~~-~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
+|.+|+|.+. .. -..+...+.|+.+.++.+.+.. -..+++|+||||||.+++.++.+++..++++|+.+|++.
T Consensus 67 -~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~~--~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~ 143 (298)
T COG2267 67 -LDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEPD--PGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALG 143 (298)
T ss_pred -ecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhccC--CCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECcccc
Confidence 7778888885 32 2235677788888877776541 236899999999999999999999999999999999876
Q ss_pred CCC--C-----------------CcCccc----ccchhh--hh---HHHHHhcCc-----------------------cc
Q 002209 796 RTL--T-----------------PFGFQN----EDRTLW--EA---TSTYVEMSP-----------------------FM 824 (953)
Q Consensus 796 ~~~--~-----------------~~~~~~----~~~~~~--~~---~~~~~~~sp-----------------------~~ 824 (953)
... . .+.+.. ....-| .+ .+.|. .+| ..
T Consensus 144 l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~-~dP~~~~~~~~~~w~~~~~~a~~~~~~~ 222 (298)
T COG2267 144 LGGAILRLILARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYE-ADPLIGVGGPVSRWVDLALLAGRVPALR 222 (298)
T ss_pred CChhHHHHHHHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHh-cCCccccCCccHHHHHHHHHhhcccchh
Confidence 441 0 011111 000000 00 11111 112 12
Q ss_pred ccCCCCCcEEEEEeCCCCCCCCch-HHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH--HHHHHHHHHHHHHhcc
Q 002209 825 SANKLKKPILLVHGEEDNNSGTLT-MQSDRFFNALKGHGALCRLVILPFESHGYAARESI--MHVLWETDRWLQKYCV 899 (953)
Q Consensus 825 ~~~~i~~P~Li~~G~~D~~v~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~--~~~~~~i~~fl~~~l~ 899 (953)
...+++.|+||+||++|.+|+ . +...++++++.... +++++++|+.|......+. +.+++.+.+||.++..
T Consensus 223 ~~~~~~~PvLll~g~~D~vv~--~~~~~~~~~~~~~~~~--~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 223 DAPAIALPVLLLQGGDDRVVD--NVEGLARFFERAGSPD--KELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred ccccccCCEEEEecCCCcccc--CcHHHHHHHHhcCCCC--ceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 245678999999999999986 3 55566666654432 6899999999998877777 8899999999998763
|
|
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=143.68 Aligned_cols=198 Identities=15% Similarity=0.121 Sum_probs=141.9
Q ss_pred cEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhh--hhhhHHHHHHHHHHHHH
Q 002209 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA--NDRFVEQLVACAEAAVE 748 (953)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~--~~~~~~~~~~D~~~~~~ 748 (953)
-.|+++||.. |++... ....++|.++||.|.+|.+ .|+|.... -........+|+.++.+
T Consensus 16 ~AVLllHGFT-----------Gt~~Dv----r~Lgr~L~e~GyTv~aP~y---pGHG~~~e~fl~t~~~DW~~~v~d~Y~ 77 (243)
T COG1647 16 RAVLLLHGFT-----------GTPRDV----RMLGRYLNENGYTVYAPRY---PGHGTLPEDFLKTTPRDWWEDVEDGYR 77 (243)
T ss_pred EEEEEEeccC-----------CCcHHH----HHHHHHHHHCCceEecCCC---CCCCCCHHHHhcCCHHHHHHHHHHHHH
Confidence 5788899942 222222 2445678889999999777 46665421 22334677889999999
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCccc-----------ccchhhhhHHHH
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN-----------EDRTLWEATSTY 817 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~-----------~~~~~~~~~~~~ 817 (953)
+|.+.++ +.|+++|.||||.+|+.++.++| .+++|..|+..+.......+.. +........+.+
T Consensus 78 ~L~~~gy---~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~ 152 (243)
T COG1647 78 DLKEAGY---DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEM 152 (243)
T ss_pred HHHHcCC---CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHH
Confidence 9998765 58999999999999999999997 7888888877653221111000 000000001111
Q ss_pred HhcC----------------cccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc
Q 002209 818 VEMS----------------PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (953)
Q Consensus 818 ~~~s----------------p~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (953)
..+. ....+++|..|+||++|.+|..|| .+.+..+|+.+... +.++.+|++.||.++...
T Consensus 153 ~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~--~~sA~~Iy~~v~s~--~KeL~~~e~SgHVIt~D~ 228 (243)
T COG1647 153 KSYKDTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVP--AESANFIYDHVESD--DKELKWLEGSGHVITLDK 228 (243)
T ss_pred HHhhcchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCC--HHHHHHHHHhccCC--cceeEEEccCCceeecch
Confidence 1111 234567889999999999999999 88888898888654 568999999999999888
Q ss_pred cHHHHHHHHHHHHH
Q 002209 882 SIMHVLWETDRWLQ 895 (953)
Q Consensus 882 ~~~~~~~~i~~fl~ 895 (953)
.++.+.+.++.||+
T Consensus 229 Erd~v~e~V~~FL~ 242 (243)
T COG1647 229 ERDQVEEDVITFLE 242 (243)
T ss_pred hHHHHHHHHHHHhh
Confidence 89999999999986
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.3e-15 Score=161.88 Aligned_cols=219 Identities=16% Similarity=0.106 Sum_probs=160.2
Q ss_pred CCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchh
Q 002209 215 SSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRT 294 (953)
Q Consensus 215 ~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (953)
+....+||+.|-++-..+.++..... +..+.|+||++.|+|..-.
T Consensus 169 ~~~~~~l~~~D~dg~~~~~l~~~~~~-----~~~p~ws~~~~~~~y~~f~------------------------------ 213 (425)
T COG0823 169 GPLPYELALGDYDGYNQQKLTDSGSL-----ILTPAWSPDGKKLAYVSFE------------------------------ 213 (425)
T ss_pred CCCCceEEEEccCCcceeEecccCcc-----eeccccCcCCCceEEEEEe------------------------------
Confidence 45578899999886556666554432 5689999999999988211
Q ss_pred hhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEe
Q 002209 295 FQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWT 372 (953)
Q Consensus 295 ~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d 372 (953)
.. +..++|++++ +|+..++.+. +....++|||||++|+|+..++ ...+||++|
T Consensus 214 --------~~-------~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd----------g~~~iy~~d 268 (425)
T COG0823 214 --------LG-------GCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD----------GSPDIYLMD 268 (425)
T ss_pred --------cC-------CCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC----------CCccEEEEc
Confidence 00 1257999999 7766666554 7778899999999999999654 234899999
Q ss_pred ccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe
Q 002209 373 TDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH 452 (953)
Q Consensus 373 ~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~ 452 (953)
++++..++|+...+.. ..+.|||||+.|+|..++ +++.+||++++ +|+..++++
T Consensus 269 l~~~~~~~Lt~~~gi~-------------~~Ps~spdG~~ivf~Sdr----------~G~p~I~~~~~---~g~~~~riT 322 (425)
T COG0823 269 LDGKNLPRLTNGFGIN-------------TSPSWSPDGSKIVFTSDR----------GGRPQIYLYDL---EGSQVTRLT 322 (425)
T ss_pred CCCCcceecccCCccc-------------cCccCCCCCCEEEEEeCC----------CCCcceEEECC---CCCceeEee
Confidence 9998888888766543 257799999999999443 45668999996 888888888
Q ss_pred ecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 453 KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 453 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
........+.|||||++|+|.... .+...+...++.++. ..+.++... .+ .. .+|+++|+.+.|...
T Consensus 323 ~~~~~~~~p~~SpdG~~i~~~~~~-~g~~~i~~~~~~~~~-~~~~lt~~~-~~-----e~--ps~~~ng~~i~~~s~ 389 (425)
T COG0823 323 FSGGGNSNPVWSPDGDKIVFESSS-GGQWDIDKNDLASGG-KIRILTSTY-LN-----ES--PSWAPNGRMIMFSSG 389 (425)
T ss_pred ccCCCCcCccCCCCCCEEEEEecc-CCceeeEEeccCCCC-cEEEccccc-cC-----CC--CCcCCCCceEEEecc
Confidence 877777789999999999998733 233567778777652 223333222 11 12 569999999999863
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-14 Score=159.60 Aligned_cols=297 Identities=16% Similarity=0.180 Sum_probs=183.2
Q ss_pred ccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCC
Q 002209 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVP 276 (953)
Q Consensus 197 SPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 276 (953)
||||++++|..+....-..+....+|++|+++++.++++..... ...+.|||||+.|+|.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~-----~~~~~~sP~g~~~~~v--------------- 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPK-----LQDAKWSPDGKYIAFV--------------- 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETT-----BSEEEE-SSSTEEEEE---------------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccc-----cccceeecCCCeeEEE---------------
Confidence 89999999977755444445678899999999999999775221 6689999999999998
Q ss_pred CCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCC-------------------cccc
Q 002209 277 LGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPA-------------------VYTS 336 (953)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~-------------------~~~~ 336 (953)
...+||+.++ +++.++|+..+ ....
T Consensus 61 -----------------------------------~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~ 105 (353)
T PF00930_consen 61 -----------------------------------RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSA 105 (353)
T ss_dssp -----------------------------------ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBS
T ss_pred -----------------------------------ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccc
Confidence 3357888888 77777777642 1245
Q ss_pred cccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002209 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (953)
Q Consensus 337 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~ 416 (953)
+.|||||++|||.+.+... -..+.+.+-..... . .| ....
T Consensus 106 ~~WSpd~~~la~~~~d~~~---------v~~~~~~~~~~~~~----~------yp---------------------~~~~ 145 (353)
T PF00930_consen 106 VWWSPDSKYLAFLRFDERE---------VPEYPLPDYSPPDS----Q------YP---------------------EVES 145 (353)
T ss_dssp EEE-TTSSEEEEEEEE-TT---------S-EEEEEEESSSTE----S------S----------------------EEEE
T ss_pred eEECCCCCEEEEEEECCcC---------CceEEeeccCCccc----c------CC---------------------cccc
Confidence 7799999999999966421 11222222211100 0 00 0000
Q ss_pred EEeccCCCcccccccCCeEEEEecCCCCCCCceEEee------cccccCCeeeccCCceEEE-EEecccCceEEEEEcCC
Q 002209 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK------LDLRYGGISWCDDSLALVY-ESWYKTRRTRTWVISPG 489 (953)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~------~~~~~~~~~~SpDg~~l~~-~~~~~~~~~~l~~~d~~ 489 (953)
......|+. ...-.++++++ .+++...+.. .+..+..+.|++|++.|++ ..++......|..+|..
T Consensus 146 ~~YPk~G~~----np~v~l~v~~~---~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~ 218 (353)
T PF00930_consen 146 IRYPKAGDP----NPRVSLFVVDL---ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAS 218 (353)
T ss_dssp EE--BTTS-------EEEEEEEES---SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEEC
T ss_pred cccCCCCCc----CCceEEEEEEC---CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECC
Confidence 001111111 12346888986 5555544321 2333456899999996554 44566666789999998
Q ss_pred CCCCCcEEeecCCCccccCCCCCCCeEec-cCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRT-STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~S-pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
++.. .....+.....+. ...+ +.|. ++|..+++.... .+..|||+++.+++..++||
T Consensus 219 tg~~-~~~~~e~~~~Wv~--~~~~-~~~~~~~~~~~l~~s~~------------------~G~~hly~~~~~~~~~~~lT 276 (353)
T PF00930_consen 219 TGET-RVVLEETSDGWVD--VYDP-PHFLGPDGNEFLWISER------------------DGYRHLYLYDLDGGKPRQLT 276 (353)
T ss_dssp TTTC-EEEEEEESSSSSS--SSSE-EEE-TTTSSEEEEEEET------------------TSSEEEEEEETTSSEEEESS
T ss_pred CCce-eEEEEecCCccee--eecc-cccccCCCCEEEEEEEc------------------CCCcEEEEEcccccceeccc
Confidence 7632 2222222222221 1112 3454 888887777641 13679999999999999999
Q ss_pred ccCcccceeeeEeeccCCccccccccCCEEEEEEecCC-CCceEEEEECC-CCCeeEEecCC
Q 002209 569 ESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKT-ENTQYYIQSWP-DKKSCQITDFP 628 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-~p~~l~~~~~~-~g~~~~Lt~~~ 628 (953)
.++.. +..+ ..++.+++.++|...... .-.+||.+++. +++.+.||...
T Consensus 277 ~G~~~-----V~~i------~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~ 327 (353)
T PF00930_consen 277 SGDWE-----VTSI------LGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED 327 (353)
T ss_dssp -SSS------EEEE------EEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS
T ss_pred cCcee-----eccc------ceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC
Confidence 99865 2222 346778889998888643 34689999999 89999999654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-13 Score=145.58 Aligned_cols=325 Identities=13% Similarity=0.118 Sum_probs=167.0
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.-....|.+||++|+|.++ .++..+||++|+++++++|||..+... .....++|+++.|+|..
T Consensus 37 YF~~~~ft~dG~kllF~s~------~dg~~nly~lDL~t~~i~QLTdg~g~~----~~g~~~s~~~~~~~Yv~------- 99 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASD------FDGNRNLYLLDLATGEITQLTDGPGDN----TFGGFLSPDDRALYYVK------- 99 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-------TTSS-EEEEEETTT-EEEE---SS-B-----TTT-EE-TTSSEEEEEE-------
T ss_pred eecCCCcCCCCCEEEEEec------cCCCcceEEEEcccCEEEECccCCCCC----ccceEEecCCCeEEEEE-------
Confidence 5667899999999999775 457999999999999999999876432 22567889999988761
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC--Ccc--cccccCCCCc
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVY--TSLDPSPDEK 344 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~--~~~~~SpDG~ 344 (953)
....|+.+|+ +++.+.|..- ... .......|+.
T Consensus 100 ------------------------------------------~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t 137 (386)
T PF14583_consen 100 ------------------------------------------NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCT 137 (386)
T ss_dssp ------------------------------------------TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSS
T ss_pred ------------------------------------------CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCcc
Confidence 1247899999 8877666543 222 2333456899
Q ss_pred EEEEEEecCCccccc---------cCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002209 345 YILISSIHRPYSFIV---------PCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~---------~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~ 415 (953)
.++........-... ...+-...|+.+|+.+++.+.+..... ...-+.|||....++-
T Consensus 138 ~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~-------------wlgH~~fsP~dp~li~ 204 (386)
T PF14583_consen 138 KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD-------------WLGHVQFSPTDPTLIM 204 (386)
T ss_dssp EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS--------------EEEEEEETTEEEEEE
T ss_pred EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc-------------cccCcccCCCCCCEEE
Confidence 888776543211000 123345578899999988887765331 1134678877665554
Q ss_pred EEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc--cccCCeeeccCCceEEEEEec-ccCceEEEEEcCCCCC
Q 002209 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--LRYGGISWCDDSLALVYESWY-KTRRTRTWVISPGSKD 492 (953)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~--~~~~~~~~SpDg~~l~~~~~~-~~~~~~l~~~d~~~~~ 492 (953)
+..+.... .-..+||+++. +|+..+.+.... ..+..--|+|||..|+|.... ++...-|..++++++
T Consensus 205 fCHEGpw~------~Vd~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~- 274 (386)
T PF14583_consen 205 FCHEGPWD------LVDQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG- 274 (386)
T ss_dssp EEE-S-TT------TSS-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred EeccCCcc------eeceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC-
Confidence 43332221 11347999995 777777664332 122335799999999997653 333346788888885
Q ss_pred CCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCc
Q 002209 493 VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (953)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~ 572 (953)
+.+.+...+... .+.-|+||+.++=-..+. -+.+...+.-.-.+.+.||++++.++..+.|.....
T Consensus 275 -~~~~~~~~p~~~--------H~~ss~Dg~L~vGDG~d~-----p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~ 340 (386)
T PF14583_consen 275 -ERRRLMEMPWCS--------HFMSSPDGKLFVGDGGDA-----PVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDT 340 (386)
T ss_dssp --EEEEEEE-SEE--------EEEE-TTSSEEEEEE------------------------EEEEEETTTTEEEEEEE---
T ss_pred -CceEEEeCCcee--------eeEEcCCCCEEEecCCCC-----CccccccccceecCCcEEEEeccccCceeeeeeccC
Confidence 334443332211 145689999776543211 111111111111246789999999999888877652
Q ss_pred ccceeeeEeecc-----CCccccccccCCEEEEEEecCCCCceEEEEECC
Q 002209 573 EKYYETTVALMS-----DQTEGDLYLNQLKILTSKESKTENTQYYIQSWP 617 (953)
Q Consensus 573 ~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 617 (953)
. ..++. ....++|||||+.++|+..- ..++.||.++++
T Consensus 341 s------w~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i~ 383 (386)
T PF14583_consen 341 S------WKVLDGDRQVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVEIP 383 (386)
T ss_dssp ----------BTTBSSTT----EE-TTSSEEEEEE-T-TSS-EEEEEE--
T ss_pred c------ceeecCCCccCCCCCccCCCCCEEEEECCC-CCCccEEEEeCc
Confidence 1 11111 12348999999999988766 457889998864
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=148.91 Aligned_cols=130 Identities=22% Similarity=0.148 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHH
Q 002209 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTY 817 (953)
Q Consensus 738 ~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 817 (953)
.....+.+.++++.++..+++++|+++|+|+||.+++.++.++|+.+.++++.++.+.. ..
T Consensus 82 ~~~~~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~------~~------------- 142 (232)
T PRK11460 82 AIMPTFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYAS------LP------------- 142 (232)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccccc------cc-------------
Confidence 33455666777777777788899999999999999999999998888888877763210 00
Q ss_pred HhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 818 ~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
.....++|+|++||++|.+|| ++.+.++++.|++.+.+++++.||+++|.+. .+..+.+.+||.+.
T Consensus 143 -------~~~~~~~pvli~hG~~D~vvp--~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~-----~~~~~~~~~~l~~~ 208 (232)
T PRK11460 143 -------ETAPTATTIHLIHGGEDPVID--VAHAVAAQEALISLGGDVTLDIVEDLGHAID-----PRLMQFALDRLRYT 208 (232)
T ss_pred -------ccccCCCcEEEEecCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCCCC-----HHHHHHHHHHHHHH
Confidence 001246899999999999999 9999999999999999999999999999985 35567778888887
Q ss_pred ccC
Q 002209 898 CVS 900 (953)
Q Consensus 898 l~~ 900 (953)
+..
T Consensus 209 l~~ 211 (232)
T PRK11460 209 VPK 211 (232)
T ss_pred cch
Confidence 743
|
|
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=149.97 Aligned_cols=208 Identities=20% Similarity=0.250 Sum_probs=137.7
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH--HcCcEEEEcCCCCC
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL--ARGFAILGGPTTPI 723 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la--~~G~~V~~~~~~~~ 723 (953)
...|.++...+|.|+++.++++. +|+|||+||+...+.+...++..+. -+..|+ +-+|-|++|.+-..
T Consensus 168 ~~tgneLkYrly~Pkdy~pdkky-~PLvlfLHgagq~g~dn~~~l~sg~---------gaiawa~pedqcfVlAPQy~~i 237 (387)
T COG4099 168 ESTGNELKYRLYTPKDYAPDKKY-YPLVLFLHGAGQGGSDNDKVLSSGI---------GAIAWAGPEDQCFVLAPQYNPI 237 (387)
T ss_pred cccCceeeEEEecccccCCCCcc-ccEEEEEecCCCCCchhhhhhhcCc---------cceeeecccCceEEEccccccc
Confidence 34678999999999999998862 3999999997655443332222211 111222 23567777664221
Q ss_pred CCCCChhhhhhhHHHHHHHHHHHHH-HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcC
Q 002209 724 IGEGDEEANDRFVEQLVACAEAAVE-EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 802 (953)
Q Consensus 724 ~G~G~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~ 802 (953)
.--.++ +. .....-.++.++ -|.+++.||..||.++|.|+||++++.++.++|+.|+|+++++|--|.
T Consensus 238 f~d~e~----~t-~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~------ 306 (387)
T COG4099 238 FADSEE----KT-LLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR------ 306 (387)
T ss_pred cccccc----cc-chhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch------
Confidence 111111 11 111222233444 677789999999999999999999999999999999999999985331
Q ss_pred cccccchhhhhHHHHHhcCcccccCCC-CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC---CCccCC
Q 002209 803 FQNEDRTLWEATSTYVEMSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF---ESHGYA 878 (953)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~---~~H~~~ 878 (953)
...++.+ +.|+.++|+.+|.++| .++++-+|+.++..+.++++..|.. ..|++.
T Consensus 307 --------------------v~lv~~lk~~piWvfhs~dDkv~P--v~nSrv~y~~lk~~~~kv~Ytaf~~g~~~~eG~d 364 (387)
T COG4099 307 --------------------VYLVRTLKKAPIWVFHSSDDKVIP--VSNSRVLYERLKALDRKVNYTAFLEGTTVLEGVD 364 (387)
T ss_pred --------------------hhhhhhhccCceEEEEecCCCccc--cCcceeehHHHHhhccccchhhhhhccccccccC
Confidence 0111122 5799999999999999 9999999999999988888877762 234332
Q ss_pred CcccH--HHHHHHHHHHHHH
Q 002209 879 ARESI--MHVLWETDRWLQK 896 (953)
Q Consensus 879 ~~~~~--~~~~~~i~~fl~~ 896 (953)
....+ ..-..++.+||-+
T Consensus 365 ~~g~w~atyn~~eaieWLl~ 384 (387)
T COG4099 365 HSGVWWATYNDAEAIEWLLK 384 (387)
T ss_pred CCCcceeecCCHHHHHHHHh
Confidence 21111 1223456788754
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-13 Score=145.49 Aligned_cols=312 Identities=16% Similarity=0.153 Sum_probs=157.7
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
.....|.+||++|+|.+.. ++.. ++|+.|+.+ ++.++||..+. ..
T Consensus 38 F~~~~ft~dG~kllF~s~~------------------------dg~~------nly~lDL~t----~~i~QLTdg~g-~~ 82 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDF------------------------DGNR------NLYLLDLAT----GEITQLTDGPG-DN 82 (386)
T ss_dssp TTS--B-TTS-EEEEEE-T------------------------TSS-------EEEEEETTT-----EEEE---SS--B-
T ss_pred ecCCCcCCCCCEEEEEecc------------------------CCCc------ceEEEEccc----CEEEECccCCC-CC
Confidence 4467899999999998873 2333 889999965 77778775432 23
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEe--cCCeEEEEEecCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV--NNSTLLVCTIPLLRGD 268 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~ws--pDg~~l~~~~~~~~~~ 268 (953)
.....+||+++.|+|... ..+|+.+|+++++.+.|...+... .....|+ .|++.++.........
T Consensus 83 ~~g~~~s~~~~~~~Yv~~---------~~~l~~vdL~T~e~~~vy~~p~~~----~g~gt~v~n~d~t~~~g~e~~~~d~ 149 (386)
T PF14583_consen 83 TFGGFLSPDDRALYYVKN---------GRSLRRVDLDTLEERVVYEVPDDW----KGYGTWVANSDCTKLVGIEISREDW 149 (386)
T ss_dssp TTT-EE-TTSSEEEEEET---------TTEEEEEETTT--EEEEEE--TTE----EEEEEEEE-TTSSEEEEEEEEGGG-
T ss_pred ccceEEecCCCeEEEEEC---------CCeEEEEECCcCcEEEEEECCccc----ccccceeeCCCccEEEEEEEeehhc
Confidence 456889999999999763 458999999999999998877753 3356675 5677776551110000
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCC-CCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSP-DEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~Sp-DG~~ 345 (953)
.. +-....-.+.+.-.....|+.+|+ +|+.+.+... .....+.+|| |...
T Consensus 150 ------------------~~---------l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~l 202 (386)
T PF14583_consen 150 ------------------KP---------LTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTL 202 (386)
T ss_dssp -------------------------------SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEE
T ss_pred ------------------cC---------ccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCE
Confidence 00 000000111111114478999999 9988887765 6667888998 6666
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
|+|-- .+|. ......||+++.+|+..+.+......+ ...---|+|||+.|.|......+
T Consensus 203 i~fCH-EGpw------~~Vd~RiW~i~~dg~~~~~v~~~~~~e-----------~~gHEfw~~DG~~i~y~~~~~~~--- 261 (386)
T PF14583_consen 203 IMFCH-EGPW------DLVDQRIWTINTDGSNVKKVHRRMEGE-----------SVGHEFWVPDGSTIWYDSYTPGG--- 261 (386)
T ss_dssp EEEEE--S-T------TTSS-SEEEEETTS---EESS---TTE-----------EEEEEEE-TTSS-EEEEEEETTT---
T ss_pred EEEec-cCCc------ceeceEEEEEEcCCCcceeeecCCCCc-----------ccccccccCCCCEEEEEeecCCC---
Confidence 66654 3322 223457999999999988887543211 11234599999999987332211
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEeccc------------CceEEEEEcCCCCCC
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT------------RRTRTWVISPGSKDV 493 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~------------~~~~l~~~d~~~~~~ 493 (953)
...-|..++. ..++.+.+...+. ..-+--|+||+.++=-..+.. ...-||++++..+
T Consensus 262 -----~~~~i~~~d~---~t~~~~~~~~~p~-~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~-- 330 (386)
T PF14583_consen 262 -----QDFWIAGYDP---DTGERRRLMEMPW-CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG-- 330 (386)
T ss_dssp -------EEEEEE-T---TT--EEEEEEE-S-EEEEEE-TTSSEEEEEE-------------------EEEEEETTTT--
T ss_pred -----CceEEEeeCC---CCCCceEEEeCCc-eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC--
Confidence 1223555664 4445555544443 334556789986654332111 1124777887764
Q ss_pred CcEEeecCCCcc-c-c--CCCCCCCeEeccCCCEEEEEee
Q 002209 494 APRILFDRSSED-V-Y--SDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 494 ~~~~~~~~~~~~-~-~--~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
....+....... + . .....|.++|||||++|+|.+.
T Consensus 331 ~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 331 RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence 333332221111 0 0 1124577899999999999984
|
|
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.3e-15 Score=151.04 Aligned_cols=188 Identities=17% Similarity=0.108 Sum_probs=117.8
Q ss_pred EEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChh--h
Q 002209 654 ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE--A 731 (953)
Q Consensus 654 ~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~--~ 731 (953)
+++|+|++. .+++|+||++||+..... .+.. ...+...+.+.||+|+.+++++..+.+..+ .
T Consensus 1 ~~ly~P~~~----~~~~P~vv~lHG~~~~~~-----------~~~~-~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~ 64 (212)
T TIGR01840 1 MYVYVPAGL----TGPRALVLALHGCGQTAS-----------AYVI-DWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWF 64 (212)
T ss_pred CEEEcCCCC----CCCCCEEEEeCCCCCCHH-----------HHhh-hcChHHHHHhCCeEEEecCCcCccccCCCCCCC
Confidence 478999874 235899999999743211 0100 011233445689999998876543221110 0
Q ss_pred h---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCc-C-ccc-
Q 002209 732 N---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF-G-FQN- 805 (953)
Q Consensus 732 ~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~-~-~~~- 805 (953)
. .........|+..+++++.++..+|++||+|+|+|+||++++.++.++|++|++++++++..-...... . +..
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~ 144 (212)
T TIGR01840 65 FTHHRARGTGEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSISATPQM 144 (212)
T ss_pred CccccCCCCccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchhhHhhc
Confidence 0 011234577888999999888889999999999999999999999999999999998887532111000 0 000
Q ss_pred -ccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhC
Q 002209 806 -EDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861 (953)
Q Consensus 806 -~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~ 861 (953)
......+..+...... ........|++|+||++|.+|| +..++++++++++.
T Consensus 145 ~~~~~~~~~~~~~~~~~--~~~~~~~p~~~i~hG~~D~vVp--~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 145 CTAATAASVCRLVRGMQ--SEYNGPTPIMSVVHGDADYTVL--PGNADEIRDAMLKV 197 (212)
T ss_pred CCCCCHHHHHHHHhccC--CcccCCCCeEEEEEcCCCceeC--cchHHHHHHHHHHh
Confidence 0000000011111111 1112234557899999999999 99999999999875
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=168.62 Aligned_cols=232 Identities=22% Similarity=0.279 Sum_probs=150.2
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCC
Q 002209 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (953)
Q Consensus 645 ~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~ 724 (953)
+..||.+|.+.+|+|++ .++.|+||++||...... + . ..........|+++||+|+.+|. +
T Consensus 2 ~~~DG~~L~~~~~~P~~-----~~~~P~Il~~~gyg~~~~----~-~------~~~~~~~~~~l~~~Gy~vv~~D~---R 62 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAG-----GGPVPVILSRTPYGKDAG----L-R------WGLDKTEPAWFVAQGYAVVIQDT---R 62 (550)
T ss_pred cCCCCCEEEEEEEecCC-----CCCCCEEEEecCCCCchh----h-c------cccccccHHHHHhCCcEEEEEec---c
Confidence 46799999999999975 235999999998421100 0 0 00111234578999999999544 6
Q ss_pred CCCChhhhhhhH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC---C
Q 002209 725 GEGDEEANDRFV-EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---P 800 (953)
Q Consensus 725 G~G~~~~~~~~~-~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~---~ 800 (953)
|+|.+.+..... ....+|+.++++|+.++++.+ .+|+++|+||||.+++.++..+|+.++|+|+.+++.+.... .
T Consensus 63 G~g~S~g~~~~~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~~~~~ 141 (550)
T TIGR00976 63 GRGASEGEFDLLGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRDIAFP 141 (550)
T ss_pred ccccCCCceEecCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHhhccC
Confidence 777775543223 578999999999999998776 69999999999999999999998999999998887663210 0
Q ss_pred cCccc-------------ccc--------------hhhh---hHHH-------------------------------HHh
Q 002209 801 FGFQN-------------EDR--------------TLWE---ATST-------------------------------YVE 819 (953)
Q Consensus 801 ~~~~~-------------~~~--------------~~~~---~~~~-------------------------------~~~ 819 (953)
-.+.. ... ..+. .... +..
T Consensus 142 g~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 221 (550)
T TIGR00976 142 GALRLDVLLGWWALLATDSMRPRADDRPPRYAAAARLAQSYDDCQTALSHTPRSSVLALDRFIGWWIQVVDDDYDESWVS 221 (550)
T ss_pred CeeccchhHHHHHhhccccccccccccccchHHHHHHhhhhhhHHHHHhcCCccccccccccchhhhhccCCCCChhhcc
Confidence 00000 000 0000 0000 001
Q ss_pred cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc-------c-cHHHHHH--H
Q 002209 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR-------E-SIMHVLW--E 889 (953)
Q Consensus 820 ~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~-------~-~~~~~~~--~ 889 (953)
.+....++++++|+|++.|-.|.. ...+.+.|+.+...+ +.++++=|. .|..... . ....... .
T Consensus 222 ~~~~~~~~~i~vP~l~~~gw~D~~----~~g~~~~~~~~~~~~-~~~lilGpw-~H~~~~~~~~~~~~g~~~~~~~~~~~ 295 (550)
T TIGR00976 222 ISLWRDLGGSDVPTLVTGGWYDNH----SRGSIRLFLAVHRGG-AQRLVVGPW-THSGLGGRVGDGNYGMAALSWVDEAE 295 (550)
T ss_pred CchhhHhcCCCCCEEEeCcccCCC----CchHHHHHHHHhhcC-CceEEEccC-CCCCcccccCCCccCccccccchhhh
Confidence 122234567899999999999943 567778888887654 567776564 6752100 0 0011112 4
Q ss_pred HHHHHHHhccCCC
Q 002209 890 TDRWLQKYCVSNT 902 (953)
Q Consensus 890 i~~fl~~~l~~~~ 902 (953)
+++||++||+...
T Consensus 296 ~~~wfD~~Lkg~~ 308 (550)
T TIGR00976 296 QLAFFDRHLKGGT 308 (550)
T ss_pred hHHHHHHHhCCCC
Confidence 6899999998643
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-15 Score=157.24 Aligned_cols=215 Identities=19% Similarity=0.275 Sum_probs=118.6
Q ss_pred CcCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCC-------CCCCCccchHH
Q 002209 633 QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSP-------NEFPRIGSTSV 705 (953)
Q Consensus 633 ~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 705 (953)
+.+.+..|++.|...++..+++++++|++. ++|.|.||++||.... ++ .+.+.+ ...........
T Consensus 82 qrdGY~~EKv~f~~~p~~~vpaylLvPd~~----~~p~PAVL~lHgHg~~-Ke---~~~g~~gv~~~~~~~~~~~~~~~g 153 (390)
T PF12715_consen 82 QRDGYTREKVEFNTTPGSRVPAYLLVPDGA----KGPFPAVLCLHGHGGG-KE---KMAGEDGVSPDLKDDYDDPKQDYG 153 (390)
T ss_dssp EETTEEEEEEEE--STTB-EEEEEEEETT------S-EEEEEEE--TT---HH---HHCT---SSGCG--STTSTTT-HH
T ss_pred ecCCeEEEEEEEEccCCeeEEEEEEecCCC----CCCCCEEEEeCCCCCC-cc---cccCCcccccccchhhccccccHH
Confidence 355678899999999999999999999874 4679999999995221 10 111110 11111223457
Q ss_pred HHHHHcCcEEEEcCCCCCCCCCChhh----------------------hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 002209 706 LLWLARGFAILGGPTTPIIGEGDEEA----------------------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAV 763 (953)
Q Consensus 706 ~~la~~G~~V~~~~~~~~~G~G~~~~----------------------~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l 763 (953)
..|+++||+|+++|.. |+|+... +..+......|.+.+++||.+++.+|++||++
T Consensus 154 ~~LAk~GYVvla~D~~---g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~ 230 (390)
T PF12715_consen 154 DQLAKRGYVVLAPDAL---GFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGC 230 (390)
T ss_dssp HHHHTTTSEEEEE--T---TSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEE
T ss_pred HHHHhCCCEEEEEccc---cccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEE
Confidence 7899999999996654 4433310 01223345677888999999999999999999
Q ss_pred EEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC-----CC-C-----cCcccc----cchhh---hhHHHHHhcCcccc
Q 002209 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT-----LT-P-----FGFQNE----DRTLW---EATSTYVEMSPFMS 825 (953)
Q Consensus 764 ~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~-----~~-~-----~~~~~~----~~~~~---~~~~~~~~~sp~~~ 825 (953)
+|+||||+.++++++.+ ++++|+|+.+-+.... ++ + .++... ...+| +.++...-.
T Consensus 231 ~GfSmGg~~a~~LaALD-dRIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~D~PdIasli----- 304 (390)
T PF12715_consen 231 MGFSMGGYRAWWLAALD-DRIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYFDFPDIASLI----- 304 (390)
T ss_dssp EEEGGGHHHHHHHHHH--TT--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC--HHHHHHTT-----
T ss_pred EeecccHHHHHHHHHcc-hhhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhCccHHHHHHh-----
Confidence 99999999999999999 7899888765432110 00 0 000000 00111 111111111
Q ss_pred cCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC
Q 002209 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (953)
Q Consensus 826 ~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 872 (953)
...|+|++.|..|..+| . .++-|+.. .+...++++.||+
T Consensus 305 ---APRPll~~nG~~Dklf~--i--V~~AY~~~-~~p~n~~~~~~p~ 343 (390)
T PF12715_consen 305 ---APRPLLFENGGKDKLFP--I--VRRAYAIM-GAPDNFQIHHYPK 343 (390)
T ss_dssp ---TTS-EEESS-B-HHHHH--H--HHHHHHHT-T-GGGEEE---GG
T ss_pred ---CCCcchhhcCCcccccH--H--HHHHHHhc-CCCcceEEeeccc
Confidence 25899999999998865 3 34444443 3345688888886
|
|
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.9e-14 Score=153.27 Aligned_cols=235 Identities=15% Similarity=0.160 Sum_probs=147.5
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccC-------------CCCCCCCccchHHHHHHH
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRG-------------SPNEFPRIGSTSVLLWLA 710 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~la~ 710 (953)
+.+.||..|..+.|.|+. +..+|+++||-...... .+++. .++++..+...++..|++
T Consensus 2 ~~~~~g~~l~~~~~~~~~-------~kg~v~i~HG~~eh~~~--~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~ 72 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKN-------AIGIIVLIHGLKSHLRL--QFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNK 72 (332)
T ss_pred ccCCCCCeEEEeeeeccC-------CeEEEEEECCCchhhhh--hhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHH
Confidence 456799999999998752 35799999993211110 00000 001111122346778999
Q ss_pred cCcEEEEcCCCCCCCCCChhhh---h---hhHHHHHHHHHHHHHHHHHc------------------CCCCCCcEEEEEe
Q 002209 711 RGFAILGGPTTPIIGEGDEEAN---D---RFVEQLVACAEAAVEEVVRR------------------GVAHPSKIAVGGH 766 (953)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~---~---~~~~~~~~D~~~~~~~l~~~------------------~~~d~~~i~l~G~ 766 (953)
+||.|++ .|.+|+|.+... . ..+...++|+...++.+.+. .+-...+++|+||
T Consensus 73 ~G~~V~~---~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~Gh 149 (332)
T TIGR01607 73 NGYSVYG---LDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGL 149 (332)
T ss_pred CCCcEEE---ecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeec
Confidence 9999999 556777776432 1 23567788999988887652 1111357999999
Q ss_pred ChHHHHHHHHHHhCCC--------cccEEEEcccCCCCCCC-----------------------C-cCcccccchhh--h
Q 002209 767 SYGAFMTANLLAHAPH--------LFCCGIARSGAYNRTLT-----------------------P-FGFQNEDRTLW--E 812 (953)
Q Consensus 767 S~GG~~a~~~a~~~p~--------~~~a~v~~~~~~d~~~~-----------------------~-~~~~~~~~~~~--~ 812 (953)
||||.+++.++...+. .++++|+.+|+...... + ..........+ .
T Consensus 150 SmGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~ 229 (332)
T TIGR01607 150 SMGGNIALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPY 229 (332)
T ss_pred cCccHHHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChh
Confidence 9999999998865432 58888888876421100 0 00000000000 0
Q ss_pred hHHHHHhcCc----------------------ccccCCC--CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002209 813 ATSTYVEMSP----------------------FMSANKL--KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (953)
Q Consensus 813 ~~~~~~~~sp----------------------~~~~~~i--~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (953)
..+.+ ..+| ...+.++ +.|+|++||++|.+|+ +..++++++.+... +++++
T Consensus 230 ~~~~~-~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~--~~~~~~~~~~~~~~--~~~l~ 304 (332)
T TIGR01607 230 VNDII-KFDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCS--YEGTVSFYNKLSIS--NKELH 304 (332)
T ss_pred hhhHH-hcCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccC--HHHHHHHHHhccCC--CcEEE
Confidence 00000 0011 1123344 6899999999999998 88888888776543 36788
Q ss_pred EeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 869 ILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 869 ~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
+|++++|.+......+.+++.+.+||+
T Consensus 305 ~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 305 TLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred EECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 999999998766667889999999985
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=132.82 Aligned_cols=201 Identities=16% Similarity=0.204 Sum_probs=141.1
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
..+.+...-| .+.+ .|.|.. ....|+.|.+|..|...+... ...-...+..|.++||+++.
T Consensus 5 ~~v~i~Gp~G-~le~-~~~~~~-----~~~~~iAli~HPHPl~gGtm~----------nkvv~~la~~l~~~G~atlR-- 65 (210)
T COG2945 5 PTVIINGPAG-RLEG-RYEPAK-----TPAAPIALICHPHPLFGGTMN----------NKVVQTLARALVKRGFATLR-- 65 (210)
T ss_pred CcEEecCCcc-ccee-ccCCCC-----CCCCceEEecCCCccccCccC----------CHHHHHHHHHHHhCCceEEe--
Confidence 3445555444 2333 344443 234899999999875544332 22223456678899999999
Q ss_pred CCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC
Q 002209 720 TTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (953)
Q Consensus 720 ~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~ 799 (953)
++++|-|++.+.-+.+-.+++|+.++++|+.++.. +..-..++|+|+|+++++.++.+.|+ ....+++.|..+. +
T Consensus 66 -fNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~--~ 140 (210)
T COG2945 66 -FNFRGVGRSQGEFDNGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINA--Y 140 (210)
T ss_pred -ecccccccccCcccCCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCc--h
Confidence 55578888877777778899999999999998742 22335789999999999999999975 5556666665441 0
Q ss_pred CcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC
Q 002209 800 PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA 879 (953)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 879 (953)
. + ..+.-...|.++++|+.|++|+ .....++.+- .+.+++..++++|.|.
T Consensus 141 d----------------f------s~l~P~P~~~lvi~g~~Ddvv~--l~~~l~~~~~-----~~~~~i~i~~a~HFF~- 190 (210)
T COG2945 141 D----------------F------SFLAPCPSPGLVIQGDADDVVD--LVAVLKWQES-----IKITVITIPGADHFFH- 190 (210)
T ss_pred h----------------h------hhccCCCCCceeEecChhhhhc--HHHHHHhhcC-----CCCceEEecCCCceec-
Confidence 0 0 1122356899999999999988 6666665443 5678899999999884
Q ss_pred cccHHHHHHHHHHHHH
Q 002209 880 RESIMHVLWETDRWLQ 895 (953)
Q Consensus 880 ~~~~~~~~~~i~~fl~ 895 (953)
.....+.+.+.+|+.
T Consensus 191 -gKl~~l~~~i~~~l~ 205 (210)
T COG2945 191 -GKLIELRDTIADFLE 205 (210)
T ss_pred -ccHHHHHHHHHHHhh
Confidence 445677788888884
|
|
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=153.52 Aligned_cols=227 Identities=17% Similarity=0.182 Sum_probs=135.8
Q ss_pred CCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccc-hHHHHHHHcCcE
Q 002209 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS-TSVLLWLARGFA 714 (953)
Q Consensus 636 ~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~G~~ 714 (953)
....++++++-.+ ..|++++.+|++ .+|.|+||++-|-. .+..-.. .+..+|+.+|++
T Consensus 162 ~~~i~~v~iP~eg-~~I~g~LhlP~~-----~~p~P~VIv~gGlD---------------s~qeD~~~l~~~~l~~rGiA 220 (411)
T PF06500_consen 162 DYPIEEVEIPFEG-KTIPGYLHLPSG-----EKPYPTVIVCGGLD---------------SLQEDLYRLFRDYLAPRGIA 220 (411)
T ss_dssp SSEEEEEEEEETT-CEEEEEEEESSS-----SS-EEEEEEE--TT---------------S-GGGGHHHHHCCCHHCT-E
T ss_pred CCCcEEEEEeeCC-cEEEEEEEcCCC-----CCCCCEEEEeCCcc---------------hhHHHHHHHHHHHHHhCCCE
Confidence 4567888888754 899999999984 45799999876521 1211111 122347889999
Q ss_pred EEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCC
Q 002209 715 ILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (953)
Q Consensus 715 V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (953)
+++. +..|.|.+.... .-++.-.-..++++||.+.+++|.+||+++|.|+||+.|..+|...+++++|+|+..|++
T Consensus 221 ~Ltv---DmPG~G~s~~~~-l~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~v 296 (411)
T PF06500_consen 221 MLTV---DMPGQGESPKWP-LTQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPV 296 (411)
T ss_dssp EEEE-----TTSGGGTTT--S-S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---
T ss_pred EEEE---ccCCCcccccCC-CCcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchH
Confidence 9994 445666653210 101111113477999999999999999999999999999999987778999999999876
Q ss_pred CCCCCCcCccccc------------chh---hhh-HHHHHhcCccc--cc--CCCCCcEEEEEeCCCCCCCCchHHHHHH
Q 002209 795 NRTLTPFGFQNED------------RTL---WEA-TSTYVEMSPFM--SA--NKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (953)
Q Consensus 795 d~~~~~~~~~~~~------------~~~---~~~-~~~~~~~sp~~--~~--~~i~~P~Li~~G~~D~~v~~~~~~~~~~ 854 (953)
+..++........ +.. ++. ...+..+|... .+ .+..+|+|.+.|++|.++| .++.+-+
T Consensus 297 h~~ft~~~~~~~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P--~eD~~li 374 (411)
T PF06500_consen 297 HHFFTDPEWQQRVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSP--IEDSRLI 374 (411)
T ss_dssp SCGGH-HHHHTTS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS---HHHHHHH
T ss_pred hhhhccHHHHhcCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCC--HHHHHHH
Confidence 5433321110000 000 000 12223455533 23 6678999999999999998 7776544
Q ss_pred HHHHHhCCCcEEEEEeCCCC-ccCCCcccHHHHHHHHHHHHHHhc
Q 002209 855 FNALKGHGALCRLVILPFES-HGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 855 ~~~l~~~g~~~~~~~~~~~~-H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
. ..+.+-+...++... |. .....+..+.+||++.|
T Consensus 375 a----~~s~~gk~~~~~~~~~~~-----gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 375 A----ESSTDGKALRIPSKPLHM-----GYPQALDEIYKWLEDKL 410 (411)
T ss_dssp H----HTBTT-EEEEE-SSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred H----hcCCCCceeecCCCcccc-----chHHHHHHHHHHHHHhc
Confidence 3 334444666666544 43 23567889999999865
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=149.79 Aligned_cols=224 Identities=20% Similarity=0.211 Sum_probs=150.2
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCC
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (953)
...+..+.+.+|.|.. ....+.|+|||+|||.|..+ +...+ .......++..|+.|+.++|+-
T Consensus 58 ~~~~~~~~~~~y~p~~---~~~~~~p~vly~HGGg~~~g--------~~~~~---~~~~~~~~~~~g~~vv~vdYrl--- 120 (312)
T COG0657 58 GPSGDGVPVRVYRPDR---KAAATAPVVLYLHGGGWVLG--------SLRTH---DALVARLAAAAGAVVVSVDYRL--- 120 (312)
T ss_pred CCCCCceeEEEECCCC---CCCCCCcEEEEEeCCeeeec--------Chhhh---HHHHHHHHHHcCCEEEecCCCC---
Confidence 3455567899999921 12335899999999864432 22222 1233445567999999988843
Q ss_pred CCChhhhhhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCC----cccEEEEcccCCCCCC
Q 002209 726 EGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGIARSGAYNRTL 798 (953)
Q Consensus 726 ~G~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~~~~d~~~ 798 (953)
.++..++..++|+.+++.|+.++. .+|+++|+|+|+|.||.+++.++....+ ..++.+.++|..|...
T Consensus 121 -----aPe~~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~ 195 (312)
T COG0657 121 -----APEHPFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS 195 (312)
T ss_pred -----CCCCCCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc
Confidence 333345788899999999998763 4899999999999999999999876532 4788899999888654
Q ss_pred CCcCccccc-chhh----h---hHHHHH---------hcCccccc--CCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHH
Q 002209 799 TPFGFQNED-RTLW----E---ATSTYV---------EMSPFMSA--NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (953)
Q Consensus 799 ~~~~~~~~~-~~~~----~---~~~~~~---------~~sp~~~~--~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~ 859 (953)
....+.... .... . -...|. ..+|+... .. -.|++|++|+.|.. ..+++.+.++|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l----~~~~~~~a~~L~ 270 (312)
T COG0657 196 SAASLPGYGEADLLDAAAILAWFADLYLGAAPDREDPEASPLASDDLSG-LPPTLIQTAEFDPL----RDEGEAYAERLR 270 (312)
T ss_pred cccchhhcCCccccCHHHHHHHHHHHhCcCccccCCCccCccccccccC-CCCEEEEecCCCcc----hhHHHHHHHHHH
Confidence 110110000 0000 0 000010 12343322 22 46899999999987 458999999999
Q ss_pred hCCCcEEEEEeCCCCccCC--CcccHHHHHHHHHHHHHH
Q 002209 860 GHGALCRLVILPFESHGYA--ARESIMHVLWETDRWLQK 896 (953)
Q Consensus 860 ~~g~~~~~~~~~~~~H~~~--~~~~~~~~~~~i~~fl~~ 896 (953)
+.|+++++..++++.|.|. ........+..+.+|+.+
T Consensus 271 ~agv~~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 271 AAGVPVELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred HcCCeEEEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999883 222334455667777663
|
|
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.6e-14 Score=148.86 Aligned_cols=213 Identities=25% Similarity=0.321 Sum_probs=136.2
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCC
Q 002209 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (953)
Q Consensus 648 dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G 727 (953)
||.+|.+.+|+| +... .+++|+||..|+...... ...... ............|+++||+||. .+.+|.|
T Consensus 1 DGv~L~adv~~P-~~~~--~~~~P~il~~tpY~~~~~-~~~~~~----~~~~~~~~~~~~~~~~GY~vV~---~D~RG~g 69 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADG--GGPFPVILTRTPYGKGDQ-TASDLA----GANPGPPSARRPFAERGYAVVV---QDVRGTG 69 (272)
T ss_dssp TS-EEEEEEEEE---TT--SSSEEEEEEEESSTCTC--HHHHHH----TTCHHSHGGGHHHHHTT-EEEE---EE-TTST
T ss_pred CCCEEEEEEEec-CCCC--CCcccEEEEccCcCCCCC-cccchh----hhhcccchhHHHHHhCCCEEEE---ECCcccc
Confidence 799999999999 3222 457999999987421000 000000 0000000001238999999999 4556777
Q ss_pred Chhhhhhh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC---CcCc
Q 002209 728 DEEANDRF-VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---PFGF 803 (953)
Q Consensus 728 ~~~~~~~~-~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~---~~~~ 803 (953)
.|.+.... ...+..|..++|+|+.++++.+ .||+++|.||+|+.++.+|+..|..+||+++..+..|.... +-+.
T Consensus 70 ~S~G~~~~~~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~ 148 (272)
T PF02129_consen 70 GSEGEFDPMSPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGA 148 (272)
T ss_dssp TS-S-B-TTSHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTE
T ss_pred cCCCccccCChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCc
Confidence 77665544 7889999999999999998765 69999999999999999999888899999999887774331 0010
Q ss_pred ccc-cchhh---------------------h-------------------------------hHHHHHhcCcccccCCCC
Q 002209 804 QNE-DRTLW---------------------E-------------------------------ATSTYVEMSPFMSANKLK 830 (953)
Q Consensus 804 ~~~-~~~~~---------------------~-------------------------------~~~~~~~~sp~~~~~~i~ 830 (953)
... ....| . ....+.+.++...+.+++
T Consensus 149 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~ 228 (272)
T PF02129_consen 149 FRLGFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKID 228 (272)
T ss_dssp EBCCHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--
T ss_pred ccccchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCC
Confidence 000 00011 0 001122233344568899
Q ss_pred CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCC-CcEEEEEeCCCCcc
Q 002209 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHG 876 (953)
Q Consensus 831 ~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~ 876 (953)
+|+|+++|..|..+ ...+.+.|++++..+ .+.++++-|. +|.
T Consensus 229 vP~l~v~Gw~D~~~---~~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 229 VPVLIVGGWYDTLF---LRGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp SEEEEEEETTCSST---SHHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred CCEEEecccCCccc---chHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999999999765 478899999999988 7889998886 775
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-13 Score=144.27 Aligned_cols=230 Identities=15% Similarity=0.130 Sum_probs=142.2
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
+.+.|.. +|..+.++++.|.+. + .+.||++|||+.. ..+. +. .....+..|+++||.|++
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~~---~---~~~vv~i~gg~~~--------~~g~--~~-~~~~la~~l~~~G~~v~~-- 62 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGAS---H---TTGVLIVVGGPQY--------RVGS--HR-QFVLLARRLAEAGFPVLR-- 62 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCCC---C---CCeEEEEeCCccc--------cCCc--hh-HHHHHHHHHHHCCCEEEE--
Confidence 4566764 678899999999641 1 2456666765311 1000 10 012345678899999999
Q ss_pred CCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC
Q 002209 720 TTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (953)
Q Consensus 720 ~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~ 799 (953)
++.+|+|.+............|+.++++++.+... ..++|.++|||+||.+++.++... +.++++|+++|.+.....
T Consensus 63 -~Dl~G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~~-~~v~~lil~~p~~~~~~~ 139 (274)
T TIGR03100 63 -FDYRGMGDSEGENLGFEGIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPAD-LRVAGLVLLNPWVRTEAA 139 (274)
T ss_pred -eCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhhC-CCccEEEEECCccCCccc
Confidence 55568887754333446678999999999986521 235799999999999999887664 689999999987431110
Q ss_pred CcC------cc--cccchhhhh-----------HHHHHh----cCc--------------ccccCCCCCcEEEEEeCCCC
Q 002209 800 PFG------FQ--NEDRTLWEA-----------TSTYVE----MSP--------------FMSANKLKKPILLVHGEEDN 842 (953)
Q Consensus 800 ~~~------~~--~~~~~~~~~-----------~~~~~~----~sp--------------~~~~~~i~~P~Li~~G~~D~ 842 (953)
... +. ......|.. ...+.. ..+ ...+.++++|+|+++|..|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~ 219 (274)
T TIGR03100 140 QAASRIRHYYLGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDL 219 (274)
T ss_pred chHHHHHHHHHHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcch
Confidence 000 00 000011110 011111 101 01233568999999999997
Q ss_pred CCCCchHH-----HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 843 NSGTLTMQ-----SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 843 ~v~~~~~~-----~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
..+ ... +.++.+.+.. ..++++.+++++|.++.......+.+.+.+||++
T Consensus 220 ~~~--~~~~~~~~~~~~~~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 220 TAQ--EFADSVLGEPAWRGALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred hHH--HHHHHhccChhhHHHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 643 111 0222222322 3478999999999887666778899999999863
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.1e-13 Score=142.22 Aligned_cols=232 Identities=16% Similarity=0.083 Sum_probs=155.9
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHH-HHcCcEEEEc
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW-LARGFAILGG 718 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~G~~V~~~ 718 (953)
..+++. ....+..++|+|....+.+ +.|+|||+|||.|..+.. ....+..+...+ .+.+++|+.+
T Consensus 64 ~dv~~~--~~~~l~vRly~P~~~~~~~--~~p~lvyfHGGGf~~~S~----------~~~~y~~~~~~~a~~~~~vvvSV 129 (336)
T KOG1515|consen 64 KDVTID--PFTNLPVRLYRPTSSSSET--KLPVLVYFHGGGFCLGSA----------NSPAYDSFCTRLAAELNCVVVSV 129 (336)
T ss_pred eeeEec--CCCCeEEEEEcCCCCCccc--CceEEEEEeCCccEeCCC----------CCchhHHHHHHHHHHcCeEEEec
Confidence 444444 3445889999998754422 499999999986554321 112223344455 4579999998
Q ss_pred CCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEEeChHHHHHHHHHHhC------CCcccEEE
Q 002209 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR----GVAHPSKIAVGGHSYGAFMTANLLAHA------PHLFCCGI 788 (953)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~----~~~d~~~i~l~G~S~GG~~a~~~a~~~------p~~~~a~v 788 (953)
+|| .++++.++..++|..+|+.|+.++ ..+|++||+|+|-|.||.+|..++.+. +..+++.|
T Consensus 130 dYR--------LAPEh~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~i 201 (336)
T KOG1515|consen 130 DYR--------LAPEHPFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQI 201 (336)
T ss_pred Ccc--------cCCCCCCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEE
Confidence 884 456666788999999999999875 568999999999999999999888642 34689999
Q ss_pred EcccCCCCCCC-CcCcc----cccchhhhhHHHHHh--------------cCccc-c----c-CCCCCcEEEEEeCCCCC
Q 002209 789 ARSGAYNRTLT-PFGFQ----NEDRTLWEATSTYVE--------------MSPFM-S----A-NKLKKPILLVHGEEDNN 843 (953)
Q Consensus 789 ~~~~~~d~~~~-~~~~~----~~~~~~~~~~~~~~~--------------~sp~~-~----~-~~i~~P~Li~~G~~D~~ 843 (953)
++.|++..... .-.++ ......+...+.+.. .+|.. . . ...-.|+||+.++.|..
T Consensus 202 li~P~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L 281 (336)
T KOG1515|consen 202 LIYPFFQGTDRTESEKQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVL 281 (336)
T ss_pred EEecccCCCCCCCHHHHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhh
Confidence 99998763221 00000 000001111111111 12222 1 1 11134699999999966
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHh
Q 002209 844 SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR----ESIMHVLWETDRWLQKY 897 (953)
Q Consensus 844 v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~fl~~~ 897 (953)
.+++..+.++|++.|+++++..++++.|++... .........+.+|+.+.
T Consensus 282 ----~D~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 282 ----RDEGLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred ----hhhhHHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 688999999999999999999999999986421 24556777788887754
|
|
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-13 Score=144.00 Aligned_cols=194 Identities=14% Similarity=0.157 Sum_probs=123.9
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~ 746 (953)
.|+||++||.... ... +........+||.|+++ +.+|+|.+.... ........|+.+.
T Consensus 13 ~~~iv~lhG~~~~-----------~~~-----~~~~~~~l~~~~~vi~~---D~~G~G~S~~~~~~~~~~~~~~~~~~~~ 73 (257)
T TIGR03611 13 APVVVLSSGLGGS-----------GSY-----WAPQLDVLTQRFHVVTY---DHRGTGRSPGELPPGYSIAHMADDVLQL 73 (257)
T ss_pred CCEEEEEcCCCcc-----------hhH-----HHHHHHHHHhccEEEEE---cCCCCCCCCCCCcccCCHHHHHHHHHHH
Confidence 6889999995311 011 11222334578999994 446777764321 1234455566555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCc-------------C-----------
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF-------------G----------- 802 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~-------------~----------- 802 (953)
++.+ +..++.++||||||.+++.++.++|+.++++|++++......... .
T Consensus 74 i~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (257)
T TIGR03611 74 LDAL------NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALF 147 (257)
T ss_pred HHHh------CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhh
Confidence 5543 346899999999999999999999999999998887543210000 0
Q ss_pred -cc----cccch------------------hhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHH
Q 002209 803 -FQ----NEDRT------------------LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (953)
Q Consensus 803 -~~----~~~~~------------------~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~ 859 (953)
+. ..... .......+...+....+.++++|+|+++|++|..+| ++.+.++++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~ 225 (257)
T TIGR03611 148 LYPADWISENAARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVP--YTQSLRLAAALP 225 (257)
T ss_pred hccccHhhccchhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccC--HHHHHHHHHhcC
Confidence 00 00000 000001111122334566789999999999999998 888888877664
Q ss_pred hCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 860 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
. .+++.++++||... .++.+.+.+.+.+||+
T Consensus 226 ~----~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 226 N----AQLKLLPYGGHASN-VTDPETFNRALLDFLK 256 (257)
T ss_pred C----ceEEEECCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 3 47888999999864 5667778888888875
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=131.62 Aligned_cols=129 Identities=25% Similarity=0.321 Sum_probs=96.2
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
.....|+++||.|+.+++ .+.+.+.. ..++.++++++.+... |.++|+++|||+||.+++.++... +
T Consensus 17 ~~~~~l~~~G~~v~~~~~---~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~i~l~G~S~Gg~~a~~~~~~~-~ 83 (145)
T PF12695_consen 17 PLAEALAEQGYAVVAFDY---PGHGDSDG--------ADAVERVLADIRAGYP-DPDRIILIGHSMGGAIAANLAARN-P 83 (145)
T ss_dssp HHHHHHHHTTEEEEEESC---TTSTTSHH--------SHHHHHHHHHHHHHHC-TCCEEEEEEETHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHCCCEEEEEec---CCCCccch--------hHHHHHHHHHHHhhcC-CCCcEEEEEEccCcHHHHHHhhhc-c
Confidence 456778999999999555 55555411 1144445555433222 788999999999999999999998 6
Q ss_pred cccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCC
Q 002209 783 LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862 (953)
Q Consensus 783 ~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g 862 (953)
.++++|+++|..+ ...+.+.+.|+|+++|++|..++ +++.++++++++
T Consensus 84 ~v~~~v~~~~~~~---------------------------~~~~~~~~~pv~~i~g~~D~~~~--~~~~~~~~~~~~--- 131 (145)
T PF12695_consen 84 RVKAVVLLSPYPD---------------------------SEDLAKIRIPVLFIHGENDPLVP--PEQVRRLYEALP--- 131 (145)
T ss_dssp TESEEEEESESSG---------------------------CHHHTTTTSEEEEEEETT-SSSH--HHHHHHHHHHHC---
T ss_pred ceeEEEEecCccc---------------------------hhhhhccCCcEEEEEECCCCcCC--HHHHHHHHHHcC---
Confidence 8999999998200 11223567899999999999998 999999999987
Q ss_pred CcEEEEEeCCCCcc
Q 002209 863 ALCRLVILPFESHG 876 (953)
Q Consensus 863 ~~~~~~~~~~~~H~ 876 (953)
.+.+++++++++|+
T Consensus 132 ~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 132 GPKELYIIPGAGHF 145 (145)
T ss_dssp SSEEEEEETTS-TT
T ss_pred CCcEEEEeCCCcCc
Confidence 45899999999995
|
... |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-11 Score=127.63 Aligned_cols=139 Identities=22% Similarity=0.239 Sum_probs=81.3
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+...++||||++.+.+. ....++++|-.+|+..-.... ...+.+.+..++||||+++++.+..++.
T Consensus 191 kFV~~VRysPDG~~Fat~g---------sDgki~iyDGktge~vg~l~~-~~aHkGsIfalsWsPDs~~~~T~SaDkt-- 258 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATAG---------SDGKIYIYDGKTGEKVGELED-SDAHKGSIFALSWSPDSTQFLTVSADKT-- 258 (603)
T ss_pred cceeeEEECCCCCeEEEec---------CCccEEEEcCCCccEEEEecC-CCCccccEEEEEECCCCceEEEecCCce--
Confidence 3788899999999988865 367899999888876544332 2234555789999999999997744433
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeE-----------eCCC-Ccccc
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKE-----------IGPP-AVYTS 336 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~-----------l~~~-~~~~~ 336 (953)
.++|+.....+...-.+.+. -.|...-.+.....|..+.++|...- +... ..++.
T Consensus 259 ----------~KIWdVs~~slv~t~~~~~~---v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITa 325 (603)
T KOG0318|consen 259 ----------IKIWDVSTNSLVSTWPMGST---VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITA 325 (603)
T ss_pred ----------EEEEEeeccceEEEeecCCc---hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeE
Confidence 23443332222111100000 01111111112334444444443322 2233 67889
Q ss_pred cccCCCCcEEEEEEec
Q 002209 337 LDPSPDEKYILISSIH 352 (953)
Q Consensus 337 ~~~SpDG~~l~~~~~~ 352 (953)
+..||||++|+..+.+
T Consensus 326 Ltv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 326 LTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEEcCCCCEEEeeccC
Confidence 9999999998877644
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=140.86 Aligned_cols=271 Identities=14% Similarity=0.102 Sum_probs=177.5
Q ss_pred hcCCCCCCceecCCCCEEEEEecCCCCCccccccc---------cceeceEEecCCC-C-CCcceeeeeceEEEEccCCC
Q 002209 106 VDAPPLPALSFSPQRDKILFLKRRALPPLEELARP---------EEKLAGLRIDGKC-N-TRSRMSFYTGIGIHQLFPDG 174 (953)
Q Consensus 106 ~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~-~~~~~~~~~~i~i~~~~~~g 174 (953)
-+..++...+||+||+.||..+..+...++...+- ..+++.+++.|.. + .....+.++.+.+|++..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~-- 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ-- 250 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC--
Confidence 35567888999999999999888755555544332 2345678888874 2 444556668899999832
Q ss_pred CCCceeeeecCCCC-CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEec
Q 002209 175 KLGQEIEIQGFPDG-AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN 253 (953)
Q Consensus 175 ~~~~~~~l~~~~~~-~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp 253 (953)
.+.|..++.. ..+..++|.|+|++|+..+- ...-.+||+.+++...+-.+.... +.+++|.+
T Consensus 251 ----e~~l~~l~gH~~RVs~VafHPsG~~L~Tasf---------D~tWRlWD~~tk~ElL~QEGHs~~----v~~iaf~~ 313 (459)
T KOG0272|consen 251 ----ETPLQDLEGHLARVSRVAFHPSGKFLGTASF---------DSTWRLWDLETKSELLLQEGHSKG----VFSIAFQP 313 (459)
T ss_pred ----CcchhhhhcchhhheeeeecCCCceeeeccc---------ccchhhcccccchhhHhhcccccc----cceeEecC
Confidence 2333334322 48999999999999998652 333345566777654443333322 77999999
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCC-C
Q 002209 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-P 331 (953)
Q Consensus 254 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~-~ 331 (953)
||..++... -| ..+. ++|+ +|.-..+.. .
T Consensus 314 DGSL~~tGG----------------------------------------lD-------~~~R--vWDlRtgr~im~L~gH 344 (459)
T KOG0272|consen 314 DGSLAATGG----------------------------------------LD-------SLGR--VWDLRTGRCIMFLAGH 344 (459)
T ss_pred CCceeeccC----------------------------------------cc-------chhh--eeecccCcEEEEeccc
Confidence 999887441 01 1123 3366 665444333 3
Q ss_pred -CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 -~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..+.+++|||+|-.||..+.++ .+.+||+..... +...|. +..-+..+.|+|++
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dn-------------t~kVWDLR~r~~--ly~ipA----------H~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDN-------------TCKVWDLRMRSE--LYTIPA----------HSNLVSQVKYSPQE 399 (459)
T ss_pred ccceeeEeECCCceEEeecCCCC-------------cEEEeeeccccc--ceeccc----------ccchhhheEecccC
Confidence 7788999999999999887554 889999985432 332221 11334578899954
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEE
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 485 (953)
...+.. .+..+.+-+|.- .+....+.|.+++..+.++..|+||..|+..+.+.+. +||.
T Consensus 400 g~fL~T------------asyD~t~kiWs~--~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~--KLW~ 458 (459)
T KOG0272|consen 400 GYFLVT------------ASYDNTVKIWST--RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTI--KLWR 458 (459)
T ss_pred CeEEEE------------cccCcceeeecC--CCcccchhhcCCccceEEEEeccCCceEEEeccCcee--eecc
Confidence 433222 133445555652 2444556688889999999999999999998877654 6763
|
|
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.3e-14 Score=143.61 Aligned_cols=180 Identities=22% Similarity=0.224 Sum_probs=121.2
Q ss_pred EEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHH
Q 002209 673 LFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVV 751 (953)
Q Consensus 673 vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~ 751 (953)
||++|||.+..+.. .........+++ .|++|+.++|+- .++..++..++|+.++++|+.
T Consensus 1 v~~~HGGg~~~g~~------------~~~~~~~~~la~~~g~~v~~~~Yrl--------~p~~~~p~~~~D~~~a~~~l~ 60 (211)
T PF07859_consen 1 VVYIHGGGWVMGSK------------ESHWPFAARLAAERGFVVVSIDYRL--------APEAPFPAALEDVKAAYRWLL 60 (211)
T ss_dssp EEEE--STTTSCGT------------TTHHHHHHHHHHHHTSEEEEEE-----------TTTSSTTHHHHHHHHHHHHHH
T ss_pred CEEECCcccccCCh------------HHHHHHHHHHHhhccEEEEEeeccc--------cccccccccccccccceeeec
Confidence 78999986553321 111344556675 899999988852 233445789999999999998
Q ss_pred Hc---CCCCCCcEEEEEeChHHHHHHHHHHhCCC----cccEEEEcccCCCC-CCCCcCcc----cccchhh-----h-h
Q 002209 752 RR---GVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGIARSGAYNR-TLTPFGFQ----NEDRTLW-----E-A 813 (953)
Q Consensus 752 ~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~~~~d~-~~~~~~~~----~~~~~~~-----~-~ 813 (953)
++ ..+|+++|+|+|+|.||.+++.++....+ .++++++++|..|. ......+. ......+ . .
T Consensus 61 ~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (211)
T PF07859_consen 61 KNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWF 140 (211)
T ss_dssp HTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHH
T ss_pred cccccccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhcccccccccccccccccccccccccc
Confidence 87 34789999999999999999999975332 48999999998776 22111010 0000000 0 0
Q ss_pred HHHHH--------hcCcccccCCC--CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002209 814 TSTYV--------EMSPFMSANKL--KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (953)
Q Consensus 814 ~~~~~--------~~sp~~~~~~i--~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (953)
...+. ..+|+.. ..+ -.|++|++|+.|.. ..++..++++|++.|++++++++++++|.|
T Consensus 141 ~~~~~~~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l----~~~~~~~~~~L~~~gv~v~~~~~~g~~H~f 209 (211)
T PF07859_consen 141 WKLYLPGSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVL----VDDSLRFAEKLKKAGVDVELHVYPGMPHGF 209 (211)
T ss_dssp HHHHHSTGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTT----HHHHHHHHHHHHHTT-EEEEEEETTEETTG
T ss_pred cccccccccccccccccccc-cccccCCCeeeeccccccc----hHHHHHHHHHHHHCCCCEEEEEECCCeEEe
Confidence 01111 2345544 123 35999999999965 678899999999999999999999999986
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.8e-13 Score=134.68 Aligned_cols=129 Identities=27% Similarity=0.310 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHh
Q 002209 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819 (953)
Q Consensus 740 ~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 819 (953)
..-+.+.++...+.+ ++++||+++|+|+||.||+.++.++|..+.++|+.+|..-....
T Consensus 87 ~~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~-------------------- 145 (216)
T PF02230_consen 87 AERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE-------------------- 145 (216)
T ss_dssp HHHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC--------------------
T ss_pred HHHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc--------------------
Confidence 334444455444444 89999999999999999999999999999999999986421100
Q ss_pred cCcccccCCC-CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 820 MSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 820 ~sp~~~~~~i-~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
........ ++|+|++||..|.+|| ...+++.++.|++.+.++++..|++.||.+. ...++.+.+||++++
T Consensus 146 --~~~~~~~~~~~pi~~~hG~~D~vvp--~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 146 --LEDRPEALAKTPILIIHGDEDPVVP--FEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----PEELRDLREFLEKHI 216 (216)
T ss_dssp --CHCCHCCCCTS-EEEEEETT-SSST--HHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH-
T ss_pred --ccccccccCCCcEEEEecCCCCccc--HHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----HHHHHHHHHHHhhhC
Confidence 00000111 6899999999999999 9999999999999999999999999999885 456788899998863
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-13 Score=149.79 Aligned_cols=236 Identities=14% Similarity=0.098 Sum_probs=144.8
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEc
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (953)
.++..+...||..+...++.+..... ....|+||++||.... .. ..+.......+.++||.|+++
T Consensus 71 ~~re~l~~~DG~~~~ldw~~~~~~~~--~~~~p~vvllHG~~g~-----------s~--~~y~~~~~~~~~~~g~~vv~~ 135 (388)
T PLN02511 71 YRRECLRTPDGGAVALDWVSGDDRAL--PADAPVLILLPGLTGG-----------SD--DSYVRHMLLRARSKGWRVVVF 135 (388)
T ss_pred eeEEEEECCCCCEEEEEecCcccccC--CCCCCEEEEECCCCCC-----------CC--CHHHHHHHHHHHHCCCEEEEE
Confidence 34445667788888765554321111 1236899999995311 11 111112344567899999995
Q ss_pred CCCCCCCCCChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc--ccEEEEcccCC
Q 002209 719 PTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL--FCCGIARSGAY 794 (953)
Q Consensus 719 ~~~~~~G~G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~--~~a~v~~~~~~ 794 (953)
| .+|+|.+... ..+.....+|+.++++++..+. ...++.++||||||.+++.++.++|+. +++++++++..
T Consensus 136 d---~rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~ 210 (388)
T PLN02511 136 N---SRGCADSPVTTPQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPF 210 (388)
T ss_pred e---cCCCCCCCCCCcCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCc
Confidence 4 4677766431 2233456789999999998763 235899999999999999999999876 78888777654
Q ss_pred CCCC------CCc--C----cc---------------------c-----ccchhh-------------hh-HHHHHhcCc
Q 002209 795 NRTL------TPF--G----FQ---------------------N-----EDRTLW-------------EA-TSTYVEMSP 822 (953)
Q Consensus 795 d~~~------~~~--~----~~---------------------~-----~~~~~~-------------~~-~~~~~~~sp 822 (953)
+... ..+ . +. . .....+ .. .+.|...++
T Consensus 211 ~l~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~ 290 (388)
T PLN02511 211 DLVIADEDFHKGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSS 290 (388)
T ss_pred CHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCc
Confidence 4210 000 0 00 0 000000 00 112334556
Q ss_pred ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHH------HHHHHHHHHHHH
Q 002209 823 FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIM------HVLWETDRWLQK 896 (953)
Q Consensus 823 ~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~------~~~~~i~~fl~~ 896 (953)
...+.+|++|+|+++|++|.++| ...... . +......+++++++++||... .+... -..+.+.+||+.
T Consensus 291 ~~~L~~I~vPtLiI~g~dDpi~p--~~~~~~--~-~~~~~p~~~l~~~~~gGH~~~-~E~p~~~~~~~w~~~~i~~Fl~~ 364 (388)
T PLN02511 291 SDSIKHVRVPLLCIQAANDPIAP--ARGIPR--E-DIKANPNCLLIVTPSGGHLGW-VAGPEAPFGAPWTDPVVMEFLEA 364 (388)
T ss_pred hhhhccCCCCeEEEEcCCCCcCC--cccCcH--h-HHhcCCCEEEEECCCcceecc-ccCCCCCCCCccHHHHHHHHHHH
Confidence 67788899999999999999987 543311 1 112234578999999999743 22221 245778899988
Q ss_pred hccC
Q 002209 897 YCVS 900 (953)
Q Consensus 897 ~l~~ 900 (953)
....
T Consensus 365 ~~~~ 368 (388)
T PLN02511 365 LEEG 368 (388)
T ss_pred HHHh
Confidence 7643
|
|
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-13 Score=144.86 Aligned_cols=174 Identities=13% Similarity=0.101 Sum_probs=113.7
Q ss_pred HHHHHcCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 706 LLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 706 ~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
..+++.||.|++ ++.+|+|.+.... .......+|+.++++.+ +.+++.++||||||.+++.++.++|+
T Consensus 54 ~~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~ 124 (282)
T TIGR03343 54 GPFVDAGYRVIL---KDSPGFNKSDAVVMDEQRGLVNARAVKGLMDAL------DIEKAHLVGNSMGGATALNFALEYPD 124 (282)
T ss_pred HHHHhCCCEEEE---ECCCCCCCCCCCcCcccccchhHHHHHHHHHHc------CCCCeeEEEECchHHHHHHHHHhChH
Confidence 456778999999 4556788875431 11112345555544443 45699999999999999999999999
Q ss_pred cccEEEEcccCCCCC--CCCcC---------------------------cccc--cc----hhhh----hHH---HHHh-
Q 002209 783 LFCCGIARSGAYNRT--LTPFG---------------------------FQNE--DR----TLWE----ATS---TYVE- 819 (953)
Q Consensus 783 ~~~a~v~~~~~~d~~--~~~~~---------------------------~~~~--~~----~~~~----~~~---~~~~- 819 (953)
+++++|++++..... ..... +... .. ..|. .+. .+..
T Consensus 125 ~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (282)
T TIGR03343 125 RIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSLITEELLQGRWENIQRQPEHLKNFLIS 204 (282)
T ss_pred hhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCcccCcHHHHHhHHHHhhcCHHHHHHHHHh
Confidence 999999988642110 00000 0000 00 0010 000 1110
Q ss_pred --------cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHH
Q 002209 820 --------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETD 891 (953)
Q Consensus 820 --------~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 891 (953)
......+.++++|+|+++|++|..++ ++.+.++++.++ .+++++++++||.. ..+....+.+.+.
T Consensus 205 ~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~--~~~~~~~~~~~~----~~~~~~i~~agH~~-~~e~p~~~~~~i~ 277 (282)
T TIGR03343 205 SQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVP--LDHGLKLLWNMP----DAQLHVFSRCGHWA-QWEHADAFNRLVI 277 (282)
T ss_pred ccccccccchHHHHHhhCCCCEEEEEccCCCcCC--chhHHHHHHhCC----CCEEEEeCCCCcCC-cccCHHHHHHHHH
Confidence 01112356789999999999999998 888888877664 36889999999987 4677788888898
Q ss_pred HHHH
Q 002209 892 RWLQ 895 (953)
Q Consensus 892 ~fl~ 895 (953)
+||.
T Consensus 278 ~fl~ 281 (282)
T TIGR03343 278 DFLR 281 (282)
T ss_pred HHhh
Confidence 9875
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-11 Score=130.67 Aligned_cols=268 Identities=14% Similarity=0.066 Sum_probs=157.2
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+.|++||+.+ + .....+. .+..+....|+|||+.++.+.. ....|+++|+.+++..+.......
T Consensus 11 ~~v~~~d~~t-~--~~~~~~~---~~~~~~~l~~~~dg~~l~~~~~--------~~~~v~~~d~~~~~~~~~~~~~~~-- 74 (300)
T TIGR03866 11 NTISVIDTAT-L--EVTRTFP---VGQRPRGITLSKDGKLLYVCAS--------DSDTIQVIDLATGEVIGTLPSGPD-- 74 (300)
T ss_pred CEEEEEECCC-C--ceEEEEE---CCCCCCceEECCCCCEEEEEEC--------CCCeEEEEECCCCcEEEeccCCCC--
Confidence 3678999843 2 1122222 2234667999999998766432 245799999988876543222221
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
...+.|+|||+.++++. . ....|+++|+
T Consensus 75 ---~~~~~~~~~g~~l~~~~---------------------------------------~---------~~~~l~~~d~~ 103 (300)
T TIGR03866 75 ---PELFALHPNGKILYIAN---------------------------------------E---------DDNLVTVIDIE 103 (300)
T ss_pred ---ccEEEECCCCCEEEEEc---------------------------------------C---------CCCeEEEEECC
Confidence 34688999999887651 0 1246778888
Q ss_pred CCce-eEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002209 322 DGTV-KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 322 ~g~~-~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
+++. ..+........++|+|||+.+++..... ..+..||..++......... ..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~------------~~~~~~d~~~~~~~~~~~~~-------------~~ 158 (300)
T TIGR03866 104 TRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT------------NMAHFIDTKTYEIVDNVLVD-------------QR 158 (300)
T ss_pred CCeEEeEeeCCCCcceEEECCCCCEEEEEecCC------------CeEEEEeCCCCeEEEEEEcC-------------CC
Confidence 5543 2332223456789999999998876321 14566787654432211110 12
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC-ceEEeec-------ccccCCeeeccCCceEEE
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKL-------DLRYGGISWCDDSLALVY 472 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~-~~~l~~~-------~~~~~~~~~SpDg~~l~~ 472 (953)
+..++|+|||+.+++.. ...+.+++||+ .+++ ...+... ......+.|+|||+.++.
T Consensus 159 ~~~~~~s~dg~~l~~~~------------~~~~~v~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 159 PRFAEFTADGKELWVSS------------EIGGTVSVIDV---ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred ccEEEECCCCCEEEEEc------------CCCCEEEEEEc---CcceeeeeeeecccccccccCCccceEECCCCCEEEE
Confidence 34688999998765541 12457888886 3333 2333211 111235789999998766
Q ss_pred EEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCC
Q 002209 473 ESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIP 552 (953)
Q Consensus 473 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (953)
....+ .++.++|..++ +....... ...+.. +.|+|||++|+.... ...
T Consensus 224 ~~~~~---~~i~v~d~~~~--~~~~~~~~-~~~~~~------~~~~~~g~~l~~~~~--------------------~~~ 271 (300)
T TIGR03866 224 ALGPA---NRVAVVDAKTY--EVLDYLLV-GQRVWQ------LAFTPDEKYLLTTNG--------------------VSN 271 (300)
T ss_pred EcCCC---CeEEEEECCCC--cEEEEEEe-CCCcce------EEECCCCCEEEEEcC--------------------CCC
Confidence 54322 25778887764 22221111 111222 789999998876531 112
Q ss_pred eEEEEECCCCceEEEec
Q 002209 553 FLDLFDINTGSKERIWE 569 (953)
Q Consensus 553 ~L~~~d~~~~~~~~l~~ 569 (953)
.|.+||+.+++...-..
T Consensus 272 ~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 272 DVSVIDVAALKVIKSIK 288 (300)
T ss_pred eEEEEECCCCcEEEEEE
Confidence 49999999988644433
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.8e-13 Score=143.68 Aligned_cols=224 Identities=15% Similarity=0.175 Sum_probs=132.6
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEc
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (953)
...+++...+|..+... |...+ ++ ..|.||++||.+... ..| ......|.++||.|++
T Consensus 21 ~~~~~~~~~~~~~~~i~-y~~~G-~~----~~~~lvliHG~~~~~-----------~~w----~~~~~~L~~~gy~vi~- 78 (302)
T PRK00870 21 PHYVDVDDGDGGPLRMH-YVDEG-PA----DGPPVLLLHGEPSWS-----------YLY----RKMIPILAAAGHRVIA- 78 (302)
T ss_pred ceeEeecCCCCceEEEE-EEecC-CC----CCCEEEEECCCCCch-----------hhH----HHHHHHHHhCCCEEEE-
Confidence 45566665566544322 22222 11 146799999953110 011 1234456678999999
Q ss_pred CCCCCCCCCChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCC
Q 002209 719 PTTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (953)
Q Consensus 719 ~~~~~~G~G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (953)
.+.+|+|.+.... .......+|+.+.++.+ +.+++.|+||||||.+++.++..+|++++++|++++..
T Consensus 79 --~Dl~G~G~S~~~~~~~~~~~~~~a~~l~~~l~~l------~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 150 (302)
T PRK00870 79 --PDLIGFGRSDKPTRREDYTYARHVEWMRSWFEQL------DLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGL 150 (302)
T ss_pred --ECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc------CCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCC
Confidence 5557888774321 12345555555554432 34589999999999999999999999999999887532
Q ss_pred CCCCC--C-----cC-cccc------------cchhh---hhHHHHH----------------hc---Cc----------
Q 002209 795 NRTLT--P-----FG-FQNE------------DRTLW---EATSTYV----------------EM---SP---------- 822 (953)
Q Consensus 795 d~~~~--~-----~~-~~~~------------~~~~~---~~~~~~~----------------~~---sp---------- 822 (953)
..... . +. +... ....+ +....|. .. .+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (302)
T PRK00870 151 PTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRA 230 (302)
T ss_pred CCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHHH
Confidence 10000 0 00 0000 00000 0000010 00 00
Q ss_pred -ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 823 -FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 823 -~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
...+.++++|+|+++|++|..+| ... .++.+.+... ..+++++++++||.. ..+..+.+.+.+.+||+++
T Consensus 231 ~~~~l~~i~~P~lii~G~~D~~~~--~~~-~~~~~~~~~~-~~~~~~~i~~~gH~~-~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 231 AWAVLERWDKPFLTAFSDSDPITG--GGD-AILQKRIPGA-AGQPHPTIKGAGHFL-QEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred HHHhhhcCCCceEEEecCCCCccc--Cch-HHHHhhcccc-cccceeeecCCCccc-hhhChHHHHHHHHHHHhcC
Confidence 01246788999999999999987 654 6666655432 113477899999987 4677788889999998764
|
|
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-13 Score=134.87 Aligned_cols=187 Identities=21% Similarity=0.218 Sum_probs=113.1
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCcEEEEcCCCCC--CCCCC
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPI--IGEGD 728 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~--~G~G~ 728 (953)
|...||+|++... .+.|+||++||..... ..|.. ... ...++ ++||+|+.|..... .....
T Consensus 1 l~Y~lYvP~~~~~---~~~PLVv~LHG~~~~a-----------~~~~~-~s~-~~~lAd~~GfivvyP~~~~~~~~~~cw 64 (220)
T PF10503_consen 1 LSYRLYVPPGAPR---GPVPLVVVLHGCGQSA-----------EDFAA-GSG-WNALADREGFIVVYPEQSRRANPQGCW 64 (220)
T ss_pred CcEEEecCCCCCC---CCCCEEEEeCCCCCCH-----------HHHHh-hcC-HHHHhhcCCeEEEcccccccCCCCCcc
Confidence 3568999997532 3589999999963221 11111 001 12345 47999998664211 01111
Q ss_pred hhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC----cC
Q 002209 729 EEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP----FG 802 (953)
Q Consensus 729 ~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~----~~ 802 (953)
.+.. ......+...+.+.++++.++..+|++||+++|+|.||+|+..+++.+|++|.|+..++|..-..... ..
T Consensus 65 ~w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~~~~a~~ 144 (220)
T PF10503_consen 65 NWFSDDQQRGGGDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAASGASALS 144 (220)
T ss_pred cccccccccCccchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccCcccHHH
Confidence 1111 11123345567788899999999999999999999999999999999999999999988763211100 00
Q ss_pred -ccc-ccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhC
Q 002209 803 -FQN-EDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861 (953)
Q Consensus 803 -~~~-~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~ 861 (953)
+.. ....+........... ..-..|++|+||+.|.+|. +.++.++.+.+...
T Consensus 145 ~m~~g~~~~p~~~~~a~~~~g-----~~~~~P~~v~hG~~D~tV~--~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 145 AMRSGPRPAPAAAWGARSDAG-----AYPGYPRIVFHGTADTTVN--PQNADQLVAQWLNV 198 (220)
T ss_pred HhhCCCCCChHHHHHhhhhcc-----CCCCCCEEEEecCCCCccC--cchHHHHHHHHHHc
Confidence 000 0000000001111100 0112589999999999998 88888888777643
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.9e-13 Score=133.77 Aligned_cols=284 Identities=14% Similarity=0.137 Sum_probs=154.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++||..+.+ +.|.+||-++++.. .+.|+++. .
T Consensus 159 WVlcvawsPDgk~iASG~~d---------------------------------g~I~lwdpktg~~~--g~~l~gH~--K 201 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSKD---------------------------------GSIRLWDPKTGQQI--GRALRGHK--K 201 (480)
T ss_pred EEEEEEECCCcchhhccccC---------------------------------CeEEEecCCCCCcc--cccccCcc--c
Confidence 46688999999999998875 47899997664432 23444433 4
Q ss_pred cccceEecc-----CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecC
Q 002209 190 KLNFVTWSQ-----DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (953)
Q Consensus 190 ~~~~~~wSP-----DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 264 (953)
.+...+|-| ..++||..+ +..++.++|+..|+........... +.-+.|--+| +||..+.+
T Consensus 202 ~It~Lawep~hl~p~~r~las~s---------kDg~vrIWd~~~~~~~~~lsgHT~~----VTCvrwGG~g-liySgS~D 267 (480)
T KOG0271|consen 202 WITALAWEPLHLVPPCRRLASSS---------KDGSVRIWDTKLGTCVRTLSGHTAS----VTCVRWGGEG-LIYSGSQD 267 (480)
T ss_pred ceeEEeecccccCCCccceeccc---------CCCCEEEEEccCceEEEEeccCccc----eEEEEEcCCc-eEEecCCC
Confidence 788888864 677776643 4667788888888766554433322 6677786444 44433211
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-------CCc-------eeEeCC
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-------DGT-------VKEIGP 330 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-------~g~-------~~~l~~ 330 (953)
... +++.+..+..+ | .++.. ..-|-.+++ +|. .....+
T Consensus 268 rtI------------kvw~a~dG~~~--r----~lkGH----------ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 268 RTI------------KVWRALDGKLC--R----ELKGH----------AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred ceE------------EEEEccchhHH--H----hhccc----------chheeeeeccchhhhhccccccccccCCChHH
Confidence 111 12211110000 0 00000 000111111 110 000000
Q ss_pred C-----CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC--ceEEEeccCCCcccCCccccccccCccc
Q 002209 331 P-----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVRELCDLPLAEDIPIAFNSVRKGMRS 403 (953)
Q Consensus 331 ~-----~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g--~~~~~l~~~~~~~~~p~~~~~~~~~~~~ 403 (953)
. ..+ ....--.|++|+..+.+ .++++|+... +-+.+++.+. .-+..
T Consensus 320 ~~~~Al~rY-~~~~~~~~erlVSgsDd-------------~tlflW~p~~~kkpi~rmtgHq-------------~lVn~ 372 (480)
T KOG0271|consen 320 EQKKALERY-EAVLKDSGERLVSGSDD-------------FTLFLWNPFKSKKPITRMTGHQ-------------ALVNH 372 (480)
T ss_pred HHHHHHHHH-HHhhccCcceeEEecCC-------------ceEEEecccccccchhhhhchh-------------hheee
Confidence 0 000 01111234556655533 3899997752 2233444432 23457
Q ss_pred eeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEE
Q 002209 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (953)
Q Consensus 404 ~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l 483 (953)
+.|||||+.|+-. +-...|.+|+- .+|.-...+-.+-..+..++||.|.|.|+..+.+.+- ++
T Consensus 373 V~fSPd~r~IASa-------------SFDkSVkLW~g--~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTL--Kv 435 (480)
T KOG0271|consen 373 VSFSPDGRYIASA-------------SFDKSVKLWDG--RTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTL--KV 435 (480)
T ss_pred EEECCCccEEEEe-------------ecccceeeeeC--CCcchhhhhhhccceeEEEEeccCccEEEEcCCCceE--EE
Confidence 8999999987765 44556778874 3343333344555667889999999988877655432 55
Q ss_pred EEEcCCCCCCCcEEeecC--CCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 484 WVISPGSKDVAPRILFDR--SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 484 ~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
|.+. +. +...+. ....+|. +-|||||+.++...
T Consensus 436 w~V~--tk----Kl~~DLpGh~DEVf~------vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 436 WDVR--TK----KLKQDLPGHADEVFA------VDWSPDGQRVASGG 470 (480)
T ss_pred EEee--ee----eecccCCCCCceEEE------EEecCCCceeecCC
Confidence 6554 31 222222 3344555 78999999987664
|
|
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-12 Score=139.28 Aligned_cols=194 Identities=19% Similarity=0.147 Sum_probs=120.3
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~ 746 (953)
.|+||++||.+.. ...| ...... ++++|.|+. .+..|+|.+.... ........|+.++
T Consensus 28 ~~~vv~~hG~~~~-----------~~~~----~~~~~~-l~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~ 88 (278)
T TIGR03056 28 GPLLLLLHGTGAS-----------THSW----RDLMPP-LARSFRVVA---PDLPGHGFTRAPFRFRFTLPSMAEDLSAL 88 (278)
T ss_pred CCeEEEEcCCCCC-----------HHHH----HHHHHH-HhhCcEEEe---ecCCCCCCCCCccccCCCHHHHHHHHHHH
Confidence 4789999995311 0111 122333 456799999 4556778764432 2345556666655
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC------C----------cC-------c
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT------P----------FG-------F 803 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~------~----------~~-------~ 803 (953)
++.+ +.+++.|+||||||.+++.++.+.|++++++|++++....... + .. .
T Consensus 89 i~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (278)
T TIGR03056 89 CAAE------GLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGA 162 (278)
T ss_pred HHHc------CCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhc
Confidence 5432 2357899999999999999999999989988888765331000 0 00 0
Q ss_pred cccc--c-------hhhh--hHHHHH-----------------hcC---cccccCCCCCcEEEEEeCCCCCCCCchHHHH
Q 002209 804 QNED--R-------TLWE--ATSTYV-----------------EMS---PFMSANKLKKPILLVHGEEDNNSGTLTMQSD 852 (953)
Q Consensus 804 ~~~~--~-------~~~~--~~~~~~-----------------~~s---p~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~ 852 (953)
.... . ..+. ....+. .+. ....+.++++|+|+++|++|..+| ....+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp--~~~~~ 240 (278)
T TIGR03056 163 ADQQRVERLIRDTGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVP--PDESK 240 (278)
T ss_pred ccCcchhHHhhccccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccC--HHHHH
Confidence 0000 0 0000 000000 000 012356688999999999999998 88777
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 853 RFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
++.+.+.. .+++.++++||.+. .+....+.+.+.+||+
T Consensus 241 ~~~~~~~~----~~~~~~~~~gH~~~-~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 241 RAATRVPT----ATLHVVPGGGHLVH-EEQADGVVGLILQAAE 278 (278)
T ss_pred HHHHhccC----CeEEEECCCCCccc-ccCHHHHHHHHHHHhC
Confidence 77665543 47889999999874 4567788888888873
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-12 Score=136.10 Aligned_cols=195 Identities=14% Similarity=0.106 Sum_probs=123.0
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh-hhHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVE 748 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~~~~ 748 (953)
.|.||++||.+... ..| ......| +.+|.|+. .+.+|+|.+.... .......+|+.++++
T Consensus 16 ~~~iv~lhG~~~~~-----------~~~----~~~~~~l-~~~~~vi~---~D~~G~G~s~~~~~~~~~~~~~d~~~~l~ 76 (255)
T PRK10673 16 NSPIVLVHGLFGSL-----------DNL----GVLARDL-VNDHDIIQ---VDMRNHGLSPRDPVMNYPAMAQDLLDTLD 76 (255)
T ss_pred CCCEEEECCCCCch-----------hHH----HHHHHHH-hhCCeEEE---ECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 57899999963210 111 1222233 46799999 5556777765432 235677788888877
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC-CCCCCC-------------CcCcccc--cchh--
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA-YNRTLT-------------PFGFQNE--DRTL-- 810 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~-~d~~~~-------------~~~~~~~--~~~~-- 810 (953)
.+ ..+++.|+||||||.+++.++.++|++++++|++++. ...... ....... ....
T Consensus 77 ~l------~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (255)
T PRK10673 77 AL------QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMR 150 (255)
T ss_pred Hc------CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHH
Confidence 65 2357999999999999999999999999999987532 111000 0000000 0000
Q ss_pred --------------------hh--h---HHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcE
Q 002209 811 --------------------WE--A---TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALC 865 (953)
Q Consensus 811 --------------------~~--~---~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~ 865 (953)
|. . ...+........+.++++|+|+++|++|..++ ....+.+.+.+. ..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~~----~~ 224 (255)
T PRK10673 151 QHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVT--EAYRDDLLAQFP----QA 224 (255)
T ss_pred HhcCCHHHHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCC--HHHHHHHHHhCC----Cc
Confidence 00 0 00111111122345678999999999999987 666666655443 35
Q ss_pred EEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 866 RLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 866 ~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
++++++++||... .+....+.+.+.+||.+
T Consensus 225 ~~~~~~~~gH~~~-~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 225 RAHVIAGAGHWVH-AEKPDAVLRAIRRYLND 254 (255)
T ss_pred EEEEeCCCCCeee-ccCHHHHHHHHHHHHhc
Confidence 8889999999764 56677888899999864
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-12 Score=136.75 Aligned_cols=209 Identities=16% Similarity=0.094 Sum_probs=131.9
Q ss_pred cEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCCh
Q 002209 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE 729 (953)
Q Consensus 650 ~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~ 729 (953)
..+++.+|+|.. .+++|+||++||+... ..+.......|+++||+|++++.++..+.+
T Consensus 37 ~~~p~~v~~P~~-----~g~~PvVv~lHG~~~~---------------~~~y~~l~~~Las~G~~VvapD~~g~~~~~-- 94 (313)
T PLN00021 37 PPKPLLVATPSE-----AGTYPVLLFLHGYLLY---------------NSFYSQLLQHIASHGFIVVAPQLYTLAGPD-- 94 (313)
T ss_pred CCceEEEEeCCC-----CCCCCEEEEECCCCCC---------------cccHHHHHHHHHhCCCEEEEecCCCcCCCC--
Confidence 468889999964 3459999999996311 111224456788999999998876532211
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHc--------CCCCCCcEEEEEeChHHHHHHHHHHhCCC-----cccEEEEcccCCCC
Q 002209 730 EANDRFVEQLVACAEAAVEEVVRR--------GVAHPSKIAVGGHSYGAFMTANLLAHAPH-----LFCCGIARSGAYNR 796 (953)
Q Consensus 730 ~~~~~~~~~~~~D~~~~~~~l~~~--------~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~~~~d~ 796 (953)
....+.|..++++|+.+. ..+|.++++|+|||+||.+++.++..+++ .|+++|.+.|+...
T Consensus 95 ------~~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~ 168 (313)
T PLN00021 95 ------GTDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGT 168 (313)
T ss_pred ------chhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccc
Confidence 122345566667776542 23677899999999999999999998864 57888888886442
Q ss_pred CCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCC-----CCC--CchHH-HHHHHHHHHhCCCcEEEE
Q 002209 797 TLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDN-----NSG--TLTMQ-SDRFFNALKGHGALCRLV 868 (953)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~-----~v~--~~~~~-~~~~~~~l~~~g~~~~~~ 868 (953)
.... . ..++ .+ .+.+ ..-++..|+||+++..|. .+| .+... -.++|++++. ++.+.
T Consensus 169 ~~~~---~---~~p~----il-~~~~--~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~---~~~~~ 232 (313)
T PLN00021 169 SKGK---Q---TPPP----VL-TYAP--HSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKA---PAVHF 232 (313)
T ss_pred cccc---C---CCCc----cc-ccCc--ccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCC---Ceeee
Confidence 1110 0 0000 00 1111 122367999999999763 111 11333 3788887765 46788
Q ss_pred EeCCCCccCCCcc----------------------cHHHHHHHHHHHHHHhccCCC
Q 002209 869 ILPFESHGYAARE----------------------SIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 869 ~~~~~~H~~~~~~----------------------~~~~~~~~i~~fl~~~l~~~~ 902 (953)
+.+++||.-.-.+ .++.+...+..||..++....
T Consensus 233 ~~~~~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~~~ 288 (313)
T PLN00021 233 VAKDYGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEGDT 288 (313)
T ss_pred eecCCCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcCch
Confidence 8899999632111 123344578999999996543
|
|
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-12 Score=136.98 Aligned_cols=211 Identities=14% Similarity=0.108 Sum_probs=132.6
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|.+++.+..... . ..|.||++||..... ..| ...... .+.+|.|++ .|..|+
T Consensus 9 ~~~~~~~~~~~~~~------~-~~~plvllHG~~~~~-----------~~w----~~~~~~-L~~~~~vi~---~Dl~G~ 62 (276)
T TIGR02240 9 LDGQSIRTAVRPGK------E-GLTPLLIFNGIGANL-----------ELV----FPFIEA-LDPDLEVIA---FDVPGV 62 (276)
T ss_pred cCCcEEEEEEecCC------C-CCCcEEEEeCCCcch-----------HHH----HHHHHH-hccCceEEE---ECCCCC
Confidence 47777776553211 1 135688999942110 011 122223 345799999 555788
Q ss_pred CChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC------
Q 002209 727 GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL------ 798 (953)
Q Consensus 727 G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~------ 798 (953)
|.+..+. .......+|+.+.++.+ +.+++.|+||||||.+++.++.++|++++++|++++......
T Consensus 63 G~S~~~~~~~~~~~~~~~~~~~i~~l------~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 136 (276)
T TIGR02240 63 GGSSTPRHPYRFPGLAKLAARMLDYL------DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPK 136 (276)
T ss_pred CCCCCCCCcCcHHHHHHHHHHHHHHh------CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchh
Confidence 8875432 22456667777766665 235799999999999999999999999999999986542100
Q ss_pred -----CC-cCcccc-----------------cchhhhh-H---------HHH----H--hcCcccccCCCCCcEEEEEeC
Q 002209 799 -----TP-FGFQNE-----------------DRTLWEA-T---------STY----V--EMSPFMSANKLKKPILLVHGE 839 (953)
Q Consensus 799 -----~~-~~~~~~-----------------~~~~~~~-~---------~~~----~--~~sp~~~~~~i~~P~Li~~G~ 839 (953)
.. ..+... ....... . ..+ . .......+.++++|+|+++|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~ 216 (276)
T TIGR02240 137 VLMMMASPRRYIQPSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGD 216 (276)
T ss_pred HHHHhcCchhhhccccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeC
Confidence 00 000000 0000000 0 000 0 011123457889999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
+|..+| +..++++.+.+.. .+++++++ ||... .+....+.+.+.+|+++.
T Consensus 217 ~D~~v~--~~~~~~l~~~~~~----~~~~~i~~-gH~~~-~e~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 217 DDPIIP--LINMRLLAWRIPN----AELHIIDD-GHLFL-ITRAEAVAPIIMKFLAEE 266 (276)
T ss_pred CCCcCC--HHHHHHHHHhCCC----CEEEEEcC-CCchh-hccHHHHHHHHHHHHHHh
Confidence 999998 8888888776643 47778886 99864 567788899999999875
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=143.23 Aligned_cols=228 Identities=17% Similarity=0.072 Sum_probs=136.0
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC
Q 002209 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (953)
Q Consensus 643 ~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (953)
.++..||..+.......+. .+.+.|+||++||.... ....+....+..|+++||.|+.+|+
T Consensus 35 ~~~~~dg~~~~l~w~~~~~----~~~~~p~vll~HG~~g~-------------~~~~~~~~~~~~l~~~G~~v~~~d~-- 95 (324)
T PRK10985 35 RLELPDGDFVDLAWSEDPA----QARHKPRLVLFHGLEGS-------------FNSPYAHGLLEAAQKRGWLGVVMHF-- 95 (324)
T ss_pred EEECCCCCEEEEecCCCCc----cCCCCCEEEEeCCCCCC-------------CcCHHHHHHHHHHHHCCCEEEEEeC--
Confidence 3566788766544322111 12246899999995311 0111122345678899999999665
Q ss_pred CCCCCChhh--hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc--ccEEEEcccCCCCCC
Q 002209 723 IIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL--FCCGIARSGAYNRTL 798 (953)
Q Consensus 723 ~~G~G~~~~--~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~--~~a~v~~~~~~d~~~ 798 (953)
+|+|.+.. ...+....+.|+..+++++.++.. ..+++++||||||.+++.+++.+++. ++++|++++.++...
T Consensus 96 -rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~--~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~ 172 (324)
T PRK10985 96 -RGCSGEPNRLHRIYHSGETEDARFFLRWLQREFG--HVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEA 172 (324)
T ss_pred -CCCCCCccCCcceECCCchHHHHHHHHHHHHhCC--CCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHH
Confidence 45554321 111222357899999999987632 35899999999999888888776543 888888887754210
Q ss_pred CC-----c---Ccc-------------------cc----------cchh-------------h-hhHHHHHhcCcccccC
Q 002209 799 TP-----F---GFQ-------------------NE----------DRTL-------------W-EATSTYVEMSPFMSAN 827 (953)
Q Consensus 799 ~~-----~---~~~-------------------~~----------~~~~-------------~-~~~~~~~~~sp~~~~~ 827 (953)
.. . .+. .. .... + ...+.|...++...+.
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~ 252 (324)
T PRK10985 173 CSYRMEQGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLN 252 (324)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHh
Confidence 00 0 000 00 0000 0 0122333445556678
Q ss_pred CCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc----cHHHHHHHHHHHHHHhc
Q 002209 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE----SIMHVLWETDRWLQKYC 898 (953)
Q Consensus 828 ~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~----~~~~~~~~i~~fl~~~l 898 (953)
++++|+|+++|++|..++ +.....+.+ ....+++++++++||...-.. ...-.-+.+.+||+.++
T Consensus 253 ~i~~P~lii~g~~D~~~~--~~~~~~~~~----~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~ 321 (324)
T PRK10985 253 QIRKPTLIIHAKDDPFMT--HEVIPKPES----LPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYL 321 (324)
T ss_pred CCCCCEEEEecCCCCCCC--hhhChHHHH----hCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhh
Confidence 899999999999999987 655444422 223478889999999643111 11223356788887664
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-11 Score=131.98 Aligned_cols=264 Identities=15% Similarity=0.148 Sum_probs=166.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..+.|+|||+.|++...+ +.+++|++.. + .....+.. ...
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~---------------------------------g~i~i~~~~~-~--~~~~~~~~--~~~ 52 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGD---------------------------------GTIKVWDLET-G--ELLRTLKG--HTG 52 (289)
T ss_pred CEEEEEEcCCCCEEEEeecC---------------------------------cEEEEEEeeC-C--CcEEEEec--CCc
Confidence 57788999999999988754 3678999853 2 12233322 223
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCcee-ecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
.+....|+|+++.|++... ...|+++++.+++.. .+..... . +..+.|+++++.++...
T Consensus 53 ~i~~~~~~~~~~~l~~~~~---------~~~i~i~~~~~~~~~~~~~~~~~-~----i~~~~~~~~~~~~~~~~------ 112 (289)
T cd00200 53 PVRDVAASADGTYLASGSS---------DKTIRLWDLETGECVRTLTGHTS-Y----VSSVAFSPDGRILSSSS------ 112 (289)
T ss_pred ceeEEEECCCCCEEEEEcC---------CCeEEEEEcCcccceEEEeccCC-c----EEEEEEcCCCCEEEEec------
Confidence 5668999999988888542 568888888875433 3322221 1 66889999987777550
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCC-CcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~-~~~~~~~~SpDG~~ 345 (953)
..+.|.++++ +++... +... ..+..+.|+|+++.
T Consensus 113 -------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 149 (289)
T cd00200 113 -------------------------------------------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF 149 (289)
T ss_pred -------------------------------------------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCE
Confidence 1346777887 564333 3323 56888999999887
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
|+....+ +.+.+||+..+.. ..+.... ..+..+.|+||++.+++.
T Consensus 150 l~~~~~~-------------~~i~i~d~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~-------- 195 (289)
T cd00200 150 VASSSQD-------------GTIKLWDLRTGKCVATLTGHT-------------GEVNSVAFSPDGEKLLSS-------- 195 (289)
T ss_pred EEEEcCC-------------CcEEEEEccccccceeEecCc-------------cccceEEECCCcCEEEEe--------
Confidence 7766523 3899999974432 2232211 234679999999877776
Q ss_pred cccccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCC
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 503 (953)
...+.+.+++. ..++. ..+......+..+.|+|++..++..... + .+++++..++ ..........
T Consensus 196 -----~~~~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~--~i~i~~~~~~--~~~~~~~~~~ 261 (289)
T cd00200 196 -----SSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLLASGSED--G--TIRVWDLRTG--ECVQTLSGHT 261 (289)
T ss_pred -----cCCCcEEEEEC---CCCceecchhhcCCceEEEEEcCCCcEEEEEcCC--C--cEEEEEcCCc--eeEEEccccC
Confidence 33567888986 32332 2233445567789999997666654422 2 4666666553 2222222222
Q ss_pred ccccCCCCCCCeEeccCCCEEEEEe
Q 002209 504 EDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 504 ~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
..+.. +.|+|+|+.++...
T Consensus 262 ~~i~~------~~~~~~~~~l~~~~ 280 (289)
T cd00200 262 NSVTS------LAWSPDGKRLASGS 280 (289)
T ss_pred CcEEE------EEECCCCCEEEEec
Confidence 22222 78999998887665
|
|
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.7e-12 Score=127.64 Aligned_cols=199 Identities=15% Similarity=0.124 Sum_probs=133.3
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhh----hHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR----FVEQLVACAEA 745 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~----~~~~~~~D~~~ 745 (953)
-|+|+++||.|.. +..|. .....|+.+||.|++ .|.+|+|.+..+.. .......|+..
T Consensus 44 gP~illlHGfPe~--------------wyswr-~q~~~la~~~~rviA---~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~ 105 (322)
T KOG4178|consen 44 GPIVLLLHGFPES--------------WYSWR-HQIPGLASRGYRVIA---PDLRGYGFSDAPPHISEYTIDELVGDIVA 105 (322)
T ss_pred CCEEEEEccCCcc--------------chhhh-hhhhhhhhcceEEEe---cCCCCCCCCCCCCCcceeeHHHHHHHHHH
Confidence 7999999997632 22222 234468899999999 66689999877643 25567788888
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC--------CC-------CCCcCcccc----
Q 002209 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN--------RT-------LTPFGFQNE---- 806 (953)
Q Consensus 746 ~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d--------~~-------~~~~~~~~~---- 806 (953)
.++.|. -+++.++||+||+.+|..++..+|+++++.|+.+..+. .. +....++..
T Consensus 106 lld~Lg------~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E 179 (322)
T KOG4178|consen 106 LLDHLG------LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPE 179 (322)
T ss_pred HHHHhc------cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcch
Confidence 777764 36999999999999999999999999999998875432 00 000000000
Q ss_pred -------------------------------cch---hhhhHH-------------------HHHhcCc--ccccCCCCC
Q 002209 807 -------------------------------DRT---LWEATS-------------------TYVEMSP--FMSANKLKK 831 (953)
Q Consensus 807 -------------------------------~~~---~~~~~~-------------------~~~~~sp--~~~~~~i~~ 831 (953)
... .|++.+ .+....+ .....++++
T Consensus 180 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~i 259 (322)
T KOG4178|consen 180 TELSKDDTEMLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITI 259 (322)
T ss_pred hhhccchhHHhHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhcccccccccc
Confidence 000 122211 1122221 234566889
Q ss_pred cEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 832 PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 832 P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
|++++.|+.|.+.+ +..-.+.+++.--. ..+.+++++.||.. ..++.+.+.+.+++||++.
T Consensus 260 Pv~fi~G~~D~v~~--~p~~~~~~rk~vp~--l~~~vv~~~~gH~v-qqe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 260 PVLFIWGDLDPVLP--YPIFGELYRKDVPR--LTERVVIEGIGHFV-QQEKPQEVNQAILGFINSF 320 (322)
T ss_pred ceEEEEecCccccc--chhHHHHHHHhhcc--ccceEEecCCcccc-cccCHHHHHHHHHHHHHhh
Confidence 99999999999987 44222333332211 13678899999976 5788899999999999875
|
|
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.7e-13 Score=139.31 Aligned_cols=193 Identities=15% Similarity=0.156 Sum_probs=118.8
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh--hhHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAV 747 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~~~ 747 (953)
.|+||++||.... ...| .... ...++||.|+. ++..|+|.+.... ......++|+.+.+
T Consensus 13 ~~~li~~hg~~~~-----------~~~~----~~~~-~~l~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~i 73 (251)
T TIGR02427 13 APVLVFINSLGTD-----------LRMW----DPVL-PALTPDFRVLR---YDKRGHGLSDAPEGPYSIEDLADDVLALL 73 (251)
T ss_pred CCeEEEEcCcccc-----------hhhH----HHHH-HHhhcccEEEE---ecCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 5899999994211 0111 1223 33457999999 4556777664322 12345555655555
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC-Cc----------C--------------
Q 002209 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-PF----------G-------------- 802 (953)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~-~~----------~-------------- 802 (953)
+.+ +.+++.++|||+||.+++.++.++|++++++|+.++....... .+ .
T Consensus 74 ~~~------~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (251)
T TIGR02427 74 DHL------GIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFT 147 (251)
T ss_pred HHh------CCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcc
Confidence 443 3468999999999999999999999999998887754321110 00 0
Q ss_pred --cccccch---hhh------hH-------HHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc
Q 002209 803 --FQNEDRT---LWE------AT-------STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (953)
Q Consensus 803 --~~~~~~~---~~~------~~-------~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (953)
+...... .+. .. ..+...+....+.++++|+|+++|++|..+| .+...++.+.+. .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~--~~~~~~~~~~~~----~ 221 (251)
T TIGR02427 148 PGFREAHPARLDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTP--PELVREIADLVP----G 221 (251)
T ss_pred cccccCChHHHHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCC--hHHHHHHHHhCC----C
Confidence 0000000 000 00 0011112223456788999999999999998 877777766653 2
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 865 CRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 865 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
.+++++++++|... .+....+.+.+.+||
T Consensus 222 ~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl 250 (251)
T TIGR02427 222 ARFAEIRGAGHIPC-VEQPEAFNAALRDFL 250 (251)
T ss_pred ceEEEECCCCCccc-ccChHHHHHHHHHHh
Confidence 57889999999764 455667777777775
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-12 Score=137.24 Aligned_cols=195 Identities=16% Similarity=0.159 Sum_probs=122.0
Q ss_pred cEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh---------hhHHHHHH
Q 002209 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---------RFVEQLVA 741 (953)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---------~~~~~~~~ 741 (953)
|.||++||.+... ..| . .....|+.+ |.|++ +|..|+|.+.... ..+....+
T Consensus 30 ~~vlllHG~~~~~-----------~~w---~-~~~~~L~~~-~~vi~---~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~ 90 (294)
T PLN02824 30 PALVLVHGFGGNA-----------DHW---R-KNTPVLAKS-HRVYA---IDLLGYGYSDKPNPRSAPPNSFYTFETWGE 90 (294)
T ss_pred CeEEEECCCCCCh-----------hHH---H-HHHHHHHhC-CeEEE---EcCCCCCCCCCCccccccccccCCHHHHHH
Confidence 6799999964211 111 1 233455555 69999 5557888775421 12455566
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC---CCC-cCc------cc---c--
Q 002209 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT---LTP-FGF------QN---E-- 806 (953)
Q Consensus 742 D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~---~~~-~~~------~~---~-- 806 (953)
|+.+.++.+ . .+++.|+||||||.+++.++.++|++++++|++++..... ... ... .. .
T Consensus 91 ~l~~~l~~l---~---~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
T PLN02824 91 QLNDFCSDV---V---GDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETA 164 (294)
T ss_pred HHHHHHHHh---c---CCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchh
Confidence 666665544 2 3689999999999999999999999999999988643110 000 000 00 0
Q ss_pred ---------c-----chh----hhh--------H-------------HHHHh---cC----cccccCCCCCcEEEEEeCC
Q 002209 807 ---------D-----RTL----WEA--------T-------------STYVE---MS----PFMSANKLKKPILLVHGEE 840 (953)
Q Consensus 807 ---------~-----~~~----~~~--------~-------------~~~~~---~s----p~~~~~~i~~P~Li~~G~~ 840 (953)
. ... +.. . ..+.. +. ....+.++++|+|+++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~ 244 (294)
T PLN02824 165 VGKAFFKSVATPETVKNILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEK 244 (294)
T ss_pred HHHHHHHhhcCHHHHHHHHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecC
Confidence 0 000 000 0 00000 00 1123567899999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
|..+| ...++.+.+.. ...++++++++||... .++.+.+.+.+.+||+++
T Consensus 245 D~~~~--~~~~~~~~~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 245 DPWEP--VELGRAYANFD----AVEDFIVLPGVGHCPQ-DEAPELVNPLIESFVARH 294 (294)
T ss_pred CCCCC--hHHHHHHHhcC----CccceEEeCCCCCChh-hhCHHHHHHHHHHHHhcC
Confidence 99998 77766643322 2257899999999764 677888999999998763
|
|
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7e-12 Score=123.75 Aligned_cols=130 Identities=23% Similarity=0.218 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHH
Q 002209 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATST 816 (953)
Q Consensus 737 ~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 816 (953)
......+.++++.+.++..+|.+|++++|+|.|+.+++.+..++|..|+++|+.+|..-....
T Consensus 77 ~~~~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~----------------- 139 (207)
T COG0400 77 DLETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE----------------- 139 (207)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc-----------------
Confidence 344556666777777777899999999999999999999999999999999999986432110
Q ss_pred HHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 817 YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 817 ~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
.....-.+|+|++||+.|++|| ...+.++.+.|++.|.++++..++ .||.+. .+.++.+.+|+..
T Consensus 140 -------~~~~~~~~pill~hG~~Dpvvp--~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~-----~e~~~~~~~wl~~ 204 (207)
T COG0400 140 -------LLPDLAGTPILLSHGTEDPVVP--LALAEALAEYLTASGADVEVRWHE-GGHEIP-----PEELEAARSWLAN 204 (207)
T ss_pred -------cccccCCCeEEEeccCcCCccC--HHHHHHHHHHHHHcCCCEEEEEec-CCCcCC-----HHHHHHHHHHHHh
Confidence 0111235899999999999999 999999999999999999999999 699985 3446777788876
Q ss_pred hc
Q 002209 897 YC 898 (953)
Q Consensus 897 ~l 898 (953)
.+
T Consensus 205 ~~ 206 (207)
T COG0400 205 TL 206 (207)
T ss_pred cc
Confidence 53
|
|
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.3e-12 Score=141.57 Aligned_cols=223 Identities=13% Similarity=0.126 Sum_probs=134.0
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH---HcCcEEEE
Q 002209 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL---ARGFAILG 717 (953)
Q Consensus 641 ~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la---~~G~~V~~ 717 (953)
...|.+..|.+++.....|++. ...|.||++||.+... ..|.......|+ +++|.|+.
T Consensus 177 ~~~~~~~~~~~l~~~~~gp~~~-----~~k~~VVLlHG~~~s~--------------~~W~~~~~~~L~~~~~~~yrVia 237 (481)
T PLN03087 177 CTSWLSSSNESLFVHVQQPKDN-----KAKEDVLFIHGFISSS--------------AFWTETLFPNFSDAAKSTYRLFA 237 (481)
T ss_pred eeeeEeeCCeEEEEEEecCCCC-----CCCCeEEEECCCCccH--------------HHHHHHHHHHHHHHhhCCCEEEE
Confidence 3455555678899888888641 1246799999963110 011111122333 47999999
Q ss_pred cCCCCCCCCCChhhhhh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCC
Q 002209 718 GPTTPIIGEGDEEANDR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~~---~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (953)
+ |..|+|.+..... ......+|+. ..+.+.. +.+++.++||||||.+++.++.++|++++++|++++..
T Consensus 238 ~---Dl~G~G~S~~p~~~~ytl~~~a~~l~---~~ll~~l--g~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~ 309 (481)
T PLN03087 238 V---DLLGFGRSPKPADSLYTLREHLEMIE---RSVLERY--KVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPY 309 (481)
T ss_pred E---CCCCCCCCcCCCCCcCCHHHHHHHHH---HHHHHHc--CCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCc
Confidence 4 5567787754311 1233344442 1222221 24689999999999999999999999999999988643
Q ss_pred CCCCC---------------C-c---Cccc------c--cc----------hhhhhH----------HHHH----hc--C
Q 002209 795 NRTLT---------------P-F---GFQN------E--DR----------TLWEAT----------STYV----EM--S 821 (953)
Q Consensus 795 d~~~~---------------~-~---~~~~------~--~~----------~~~~~~----------~~~~----~~--s 821 (953)
..... . + .+.. . .. ..|+.. ..+. .. .
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 389 (481)
T PLN03087 310 YPVPKGVQATQYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHN 389 (481)
T ss_pred cccccchhHHHHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccch
Confidence 21000 0 0 0000 0 00 001100 0000 00 0
Q ss_pred c-------------------c-cccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc
Q 002209 822 P-------------------F-MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (953)
Q Consensus 822 p-------------------~-~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (953)
+ + ....++++|+|++||++|..+| ++.++.+.+.+.. .++++++++||.....+
T Consensus 390 ~~~~~l~~~i~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP--~~~~~~la~~iP~----a~l~vI~~aGH~~~v~e 463 (481)
T PLN03087 390 AAWHTLHNIICGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIP--VECSYAVKAKVPR----ARVKVIDDKDHITIVVG 463 (481)
T ss_pred hhHHHHHHHHhchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCC--HHHHHHHHHhCCC----CEEEEeCCCCCcchhhc
Confidence 0 0 0112688999999999999998 8888888777643 58999999999864345
Q ss_pred cHHHHHHHHHHHHHH
Q 002209 882 SIMHVLWETDRWLQK 896 (953)
Q Consensus 882 ~~~~~~~~i~~fl~~ 896 (953)
....+.+.+.+|...
T Consensus 464 ~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 464 RQKEFARELEEIWRR 478 (481)
T ss_pred CHHHHHHHHHHHhhc
Confidence 667777888887643
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7e-12 Score=120.10 Aligned_cols=240 Identities=15% Similarity=0.145 Sum_probs=163.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCC-
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG- 188 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~- 188 (953)
.+..+.++||++.||..... .|+++|+++ +...++..+...
T Consensus 42 qVNrLeiTpdk~~LAaa~~q----------------------------------hvRlyD~~S----~np~Pv~t~e~h~ 83 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAAGNQ----------------------------------HVRLYDLNS----NNPNPVATFEGHT 83 (311)
T ss_pred ceeeEEEcCCcchhhhccCC----------------------------------eeEEEEccC----CCCCceeEEeccC
Confidence 57789999999999988774 789999965 223233323222
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+..+.|--||+|++.. +++..+.++|+..-...++...... +..+...|+-..|+..
T Consensus 84 kNVtaVgF~~dgrWMyTg---------seDgt~kIWdlR~~~~qR~~~~~sp-----Vn~vvlhpnQteLis~------- 142 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTG---------SEDGTVKIWDLRSLSCQRNYQHNSP-----VNTVVLHPNQTELISG------- 142 (311)
T ss_pred CceEEEEEeecCeEEEec---------CCCceEEEEeccCcccchhccCCCC-----cceEEecCCcceEEee-------
Confidence 478999999999999873 3455666677777667777665532 6778888887777755
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC--ceeEeCCC-CcccccccCCCCc
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--TVKEIGPP-AVYTSLDPSPDEK 344 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g--~~~~l~~~-~~~~~~~~SpDG~ 344 (953)
| ..++|+++|+ +. ....+.+. ..+++....|||+
T Consensus 143 -----------------------------------d-------qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs 180 (311)
T KOG0315|consen 143 -----------------------------------D-------QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS 180 (311)
T ss_pred -----------------------------------c-------CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc
Confidence 0 3467889998 44 33444444 7788999999999
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCce----EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~----~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
.++...+.+ +.++|++-+.. ..+++..+ .....+....+|||+|.|+-.
T Consensus 181 ml~a~nnkG-------------~cyvW~l~~~~~~s~l~P~~k~~----------ah~~~il~C~lSPd~k~lat~---- 233 (311)
T KOG0315|consen 181 MLAAANNKG-------------NCYVWRLLNHQTASELEPVHKFQ----------AHNGHILRCLLSPDVKYLATC---- 233 (311)
T ss_pred EEEEecCCc-------------cEEEEEccCCCccccceEhhhee----------cccceEEEEEECCCCcEEEee----
Confidence 998876443 89999986432 23333322 122233467899999988766
Q ss_pred cCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCC
Q 002209 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
+....+++|+.+.. =.....++.+...+...+||.||++|+.++.+.. .+||-+...
T Consensus 234 ---------ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~--~rlW~~~~~ 290 (311)
T KOG0315|consen 234 ---------SSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHT--ARLWDLSAG 290 (311)
T ss_pred ---------cCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCc--eeecccccC
Confidence 45567778875111 0112345666666778899999999999887753 378766543
|
|
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-12 Score=138.75 Aligned_cols=217 Identities=16% Similarity=0.125 Sum_probs=126.0
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC
Q 002209 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (953)
Q Consensus 643 ~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (953)
.+...+|.+++...+-++ + .+.||++||++.... .......+...+|.|+. .+
T Consensus 8 ~~~~~~~~~l~y~~~g~~------~--~~~lvllHG~~~~~~----------------~~~~~~~~~~~~~~vi~---~D 60 (306)
T TIGR01249 8 YLNVSDNHQLYYEQSGNP------D--GKPVVFLHGGPGSGT----------------DPGCRRFFDPETYRIVL---FD 60 (306)
T ss_pred eEEcCCCcEEEEEECcCC------C--CCEEEEECCCCCCCC----------------CHHHHhccCccCCEEEE---EC
Confidence 445557777765443211 1 345788999752210 01122234457899999 55
Q ss_pred CCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC-----
Q 002209 723 IIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT----- 797 (953)
Q Consensus 723 ~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~----- 797 (953)
.+|+|.+............|+.+.+..+.+.- +.+++.++||||||++++.++.++|++++++|+.++.....
T Consensus 61 ~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 138 (306)
T TIGR01249 61 QRGCGKSTPHACLEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSW 138 (306)
T ss_pred CCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHH
Confidence 56788775432111112223333333343332 23579999999999999999999999999888876532100
Q ss_pred --------CCC-----------cCcc-------------ccc-------chh---hhh-------------------HHH
Q 002209 798 --------LTP-----------FGFQ-------------NED-------RTL---WEA-------------------TST 816 (953)
Q Consensus 798 --------~~~-----------~~~~-------------~~~-------~~~---~~~-------------------~~~ 816 (953)
..+ .... ... ... |.. ...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (306)
T TIGR01249 139 FYEGGASMIYPDAWQRFMDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLA 218 (306)
T ss_pred HHhcchhhhCHHHHHHHhhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHH
Confidence 000 0000 000 000 000 000
Q ss_pred HHh-----------cC----cccccCCC-CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc
Q 002209 817 YVE-----------MS----PFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880 (953)
Q Consensus 817 ~~~-----------~s----p~~~~~~i-~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 880 (953)
+.. .+ -...+.++ ++|+|++||++|..+| ...+.++++.+.. .++++++++||....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~g~~D~~~p--~~~~~~~~~~~~~----~~~~~~~~~gH~~~~- 291 (306)
T TIGR01249 219 FARLENHYFVNKGFLDVENFILDNISKIRNIPTYIVHGRYDLCCP--LQSAWALHKAFPE----AELKVTNNAGHSAFD- 291 (306)
T ss_pred HHHHHHhHHHHhchhcCchHHHHhhhhccCCCeEEEecCCCCCCC--HHHHHHHHHhCCC----CEEEEECCCCCCCCC-
Confidence 000 00 01233456 5899999999999998 8888888877643 588899999998753
Q ss_pred ccHHHHHHHHHHHHHHhc
Q 002209 881 ESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 881 ~~~~~~~~~i~~fl~~~l 898 (953)
....+.+.+|+..+|
T Consensus 292 ---~~~~~~i~~~~~~~~ 306 (306)
T TIGR01249 292 ---PNNLAALVHALETYL 306 (306)
T ss_pred ---hHHHHHHHHHHHHhC
Confidence 345677888887764
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-12 Score=139.95 Aligned_cols=245 Identities=14% Similarity=0.101 Sum_probs=152.4
Q ss_pred cCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCc--cchHHHHHHHc
Q 002209 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI--GSTSVLLWLAR 711 (953)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~la~~ 711 (953)
...+++|+..+++.||..+....+.+.. ......+.|+|+++||....+. .|... ....+..|+++
T Consensus 39 ~~gy~~e~h~v~T~DGy~L~l~ri~~~~-~~~~~~~~~~Vll~HGl~~ss~-----------~w~~~~~~~sla~~La~~ 106 (395)
T PLN02872 39 PAGYSCTEHTIQTKDGYLLALQRVSSRN-PRLGSQRGPPVLLQHGLFMAGD-----------AWFLNSPEQSLGFILADH 106 (395)
T ss_pred HcCCCceEEEEECCCCcEEEEEEcCCCC-CCCCCCCCCeEEEeCccccccc-----------ceeecCcccchHHHHHhC
Confidence 3467889999999999988776653322 1111123578999999642221 11100 11234467899
Q ss_pred CcEEEEcCCCCCCC-CCChh---h-----hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 712 GFAILGGPTTPIIG-EGDEE---A-----NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 712 G~~V~~~~~~~~~G-~G~~~---~-----~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
||.|+.+|.+|... +|... . ...+.+....|+.++++++.+.. .+++.++|||+||.+++.++ ..|+
T Consensus 107 GydV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~ 182 (395)
T PLN02872 107 GFDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPN 182 (395)
T ss_pred CCCcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChH
Confidence 99999977765421 22111 1 11233344589999999997642 36899999999999998555 5665
Q ss_pred ---cccEEEEcccCCCCCC-----------------------CCcCccc-----------------------------c-
Q 002209 783 ---LFCCGIARSGAYNRTL-----------------------TPFGFQN-----------------------------E- 806 (953)
Q Consensus 783 ---~~~a~v~~~~~~d~~~-----------------------~~~~~~~-----------------------------~- 806 (953)
.++++++.+|+..... ..+.... .
T Consensus 183 ~~~~v~~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~ 262 (395)
T PLN02872 183 VVEMVEAAALLCPISYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCF 262 (395)
T ss_pred HHHHHHHHHHhcchhhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCccc
Confidence 4666666666421000 0000000 0
Q ss_pred c-------------ch-----------------------hhhhHHHHHhc-CcccccCCC--CCcEEEEEeCCCCCCCCc
Q 002209 807 D-------------RT-----------------------LWEATSTYVEM-SPFMSANKL--KKPILLVHGEEDNNSGTL 847 (953)
Q Consensus 807 ~-------------~~-----------------------~~~~~~~~~~~-sp~~~~~~i--~~P~Li~~G~~D~~v~~~ 847 (953)
. ++ ...+...|... .|...+.++ +.|+++++|++|..++
T Consensus 263 n~~~~~~~~~~~pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~-- 340 (395)
T PLN02872 263 NASRIDYYLEYEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLAD-- 340 (395)
T ss_pred chhhhhHHHhcCCCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCC--
Confidence 0 00 00011122222 234456777 5799999999999998
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHHhcc
Q 002209 848 TMQSDRFFNALKGHGALCRLVILPFESHG--YAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 848 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
+....++.+.+... .+++.+++.+|. +...+..+.+++.+++||++++.
T Consensus 341 ~~dv~~l~~~Lp~~---~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~ 391 (395)
T PLN02872 341 VTDVEHTLAELPSK---PELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGK 391 (395)
T ss_pred HHHHHHHHHHCCCc---cEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhh
Confidence 88888888877542 477889999996 44566678899999999998764
|
|
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.4e-12 Score=139.91 Aligned_cols=199 Identities=16% Similarity=0.182 Sum_probs=121.8
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh--h-hHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--R-FVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~--~-~~~~~~~D~~~~ 746 (953)
.|.||++||.+.. ...|. .....| +.+|.|+. .|..|+|.+.... . ......+|+.+.
T Consensus 88 gp~lvllHG~~~~--------------~~~w~-~~~~~L-~~~~~via---~Dl~G~G~S~~~~~~~~~~~~~a~~l~~~ 148 (360)
T PLN02679 88 GPPVLLVHGFGAS--------------IPHWR-RNIGVL-AKNYTVYA---IDLLGFGASDKPPGFSYTMETWAELILDF 148 (360)
T ss_pred CCeEEEECCCCCC--------------HHHHH-HHHHHH-hcCCEEEE---ECCCCCCCCCCCCCccccHHHHHHHHHHH
Confidence 3679999995311 11111 122233 45899999 5556888775432 1 234555565555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH-hCCCcccEEEEcccCCCCCC----CCcC------------c------
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA-HAPHLFCCGIARSGAYNRTL----TPFG------------F------ 803 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~~~~d~~~----~~~~------------~------ 803 (953)
++.+ ..+++.|+||||||.+++.++. ++|++++++|++++...... ..+. +
T Consensus 149 l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (360)
T PLN02679 149 LEEV------VQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRG 222 (360)
T ss_pred HHHh------cCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchh
Confidence 5543 2358999999999999998887 46899999999876421100 0000 0
Q ss_pred ------ccc--cchhh---------------hh-------------HHHHHhc-------CcccccCCCCCcEEEEEeCC
Q 002209 804 ------QNE--DRTLW---------------EA-------------TSTYVEM-------SPFMSANKLKKPILLVHGEE 840 (953)
Q Consensus 804 ------~~~--~~~~~---------------~~-------------~~~~~~~-------sp~~~~~~i~~P~Li~~G~~ 840 (953)
... ..... +. ...+... +....+.++++|+||++|++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~ 302 (360)
T PLN02679 223 IASALFNRVKQRDNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQ 302 (360)
T ss_pred hHHHHHHHhcCHHHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCC
Confidence 000 00000 00 0001100 11134567889999999999
Q ss_pred CCCCCCchHHH-HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 841 DNNSGTLTMQS-DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 841 D~~v~~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
|..+| +... .++++.+.+.-...++++++++||.. ..+..+.+.+.+.+||.+
T Consensus 303 D~~~p--~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~-~~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 303 DPFTP--LDGPVGKYFSSLPSQLPNVTLYVLEGVGHCP-HDDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred CCCcC--chhhHHHHHHhhhccCCceEEEEcCCCCCCc-cccCHHHHHHHHHHHHHh
Confidence 99987 6542 33455555443457899999999986 467788899999999975
|
|
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.5e-12 Score=132.29 Aligned_cols=177 Identities=14% Similarity=0.119 Sum_probs=114.7
Q ss_pred HHHHHHcCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC
Q 002209 705 VLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP 781 (953)
Q Consensus 705 ~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p 781 (953)
...|++.||.|++ .|.+|+|.+.... .......+|+.+.++.+. . .+++.++||||||.+++.++.++|
T Consensus 23 ~~~L~~~~~~via---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l~----~-~~~~~lvGhSmGG~ia~~~a~~~p 94 (255)
T PLN02965 23 ATLLDAAGFKSTC---VDLTGAGISLTDSNTVSSSDQYNRPLFALLSDLP----P-DHKVILVGHSIGGGSVTEALCKFT 94 (255)
T ss_pred HHHHhhCCceEEE---ecCCcCCCCCCCccccCCHHHHHHHHHHHHHhcC----C-CCCEEEEecCcchHHHHHHHHhCc
Confidence 4456688999999 5557888775321 224566677777666541 1 148999999999999999999999
Q ss_pred CcccEEEEcccCC---CCCCC------------CcCc--ccc---c-------chhh-----h--hHH--HH--HhcCc-
Q 002209 782 HLFCCGIARSGAY---NRTLT------------PFGF--QNE---D-------RTLW-----E--ATS--TY--VEMSP- 822 (953)
Q Consensus 782 ~~~~a~v~~~~~~---d~~~~------------~~~~--~~~---~-------~~~~-----~--~~~--~~--~~~sp- 822 (953)
++++++|.+++.. ..... .+.+ ... . .... . ..+ .+ ....+
T Consensus 95 ~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (255)
T PLN02965 95 DKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRHYYYNQSPLEDYTLSSKLLRPA 174 (255)
T ss_pred hheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHHHHhcCCCHHHHHHHHHhcCCC
Confidence 9999999887641 10000 0000 000 0 0000 0 000 00 00000
Q ss_pred -c----------cccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHH
Q 002209 823 -F----------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETD 891 (953)
Q Consensus 823 -~----------~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 891 (953)
. ..+.++++|+|+++|++|..+| +..++.+.+.+.. .++++++++||... .+..+.+.+.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~--~~~~~~~~~~~~~----a~~~~i~~~GH~~~-~e~p~~v~~~l~ 247 (255)
T PLN02965 175 PVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFD--PVRQDVMVENWPP----AQTYVLEDSDHSAF-FSVPTTLFQYLL 247 (255)
T ss_pred CCcchhhhhhccchhhcCCCCEEEEEcCCCCCCC--HHHHHHHHHhCCc----ceEEEecCCCCchh-hcCHHHHHHHHH
Confidence 0 1223588999999999999998 8777777766544 47889999999874 677788888888
Q ss_pred HHHHH
Q 002209 892 RWLQK 896 (953)
Q Consensus 892 ~fl~~ 896 (953)
+|++.
T Consensus 248 ~~~~~ 252 (255)
T PLN02965 248 QAVSS 252 (255)
T ss_pred HHHHH
Confidence 88765
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-10 Score=126.36 Aligned_cols=246 Identities=14% Similarity=0.069 Sum_probs=144.9
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
+..++|||||+.++..... + +.|++||+.+ ++... .++.+..
T Consensus 33 ~~~l~~~~dg~~l~~~~~~------------------------~--------~~v~~~d~~~----~~~~~--~~~~~~~ 74 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASD------------------------S--------DTIQVIDLAT----GEVIG--TLPSGPD 74 (300)
T ss_pred CCceEECCCCCEEEEEECC------------------------C--------CeEEEEECCC----CcEEE--eccCCCC
Confidence 4578999999987655432 0 2578999743 22211 1222234
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
.....|+|||+.|+.... ....|+++|+.+++.......... ...++|+|||+.+++...
T Consensus 75 ~~~~~~~~~g~~l~~~~~--------~~~~l~~~d~~~~~~~~~~~~~~~-----~~~~~~~~dg~~l~~~~~------- 134 (300)
T TIGR03866 75 PELFALHPNGKILYIANE--------DDNLVTVIDIETRKVLAEIPVGVE-----PEGMAVSPDGKIVVNTSE------- 134 (300)
T ss_pred ccEEEECCCCCEEEEEcC--------CCCeEEEEECCCCeEEeEeeCCCC-----cceEEECCCCCEEEEEec-------
Confidence 567899999997766431 234799999987654332221111 457899999999887611
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCCCcccccccCCCCcEEEE
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPPAVYTSLDPSPDEKYILI 348 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~~~~~~~~~SpDG~~l~~ 348 (953)
....++.++. +++... +........++|+|||++|++
T Consensus 135 -----------------------------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 135 -----------------------------------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWV 173 (300)
T ss_pred -----------------------------------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEE
Confidence 0112344566 554322 222234456889999999887
Q ss_pred EEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
.... .+.+.+||+++++. +.+.... ....+ .......+.|+|||+.++...
T Consensus 174 ~~~~------------~~~v~i~d~~~~~~~~~~~~~~-~~~~~-----~~~~~~~i~~s~dg~~~~~~~---------- 225 (300)
T TIGR03866 174 SSEI------------GGTVSVIDVATRKVIKKITFEI-PGVHP-----EAVQPVGIKLTKDGKTAFVAL---------- 225 (300)
T ss_pred EcCC------------CCEEEEEEcCcceeeeeeeecc-ccccc-----ccCCccceEECCCCCEEEEEc----------
Confidence 6521 23799999986543 3333211 00000 001123588999999754431
Q ss_pred ccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
...+.+.++|. ..++..........+..++|+|||++|+.+...+ + .|.++|+.++
T Consensus 226 --~~~~~i~v~d~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-~--~i~v~d~~~~ 281 (300)
T TIGR03866 226 --GPANRVAVVDA---KTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVS-N--DVSVIDVAAL 281 (300)
T ss_pred --CCCCeEEEEEC---CCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCC-C--eEEEEECCCC
Confidence 22346888886 4444433223334567899999999987664322 2 6888888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-11 Score=122.95 Aligned_cols=149 Identities=11% Similarity=0.025 Sum_probs=94.4
Q ss_pred cCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEc
Q 002209 711 RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (953)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (953)
.+|.|++++. .|++ . +..+.++.+.+.. +.+++.++|+|+||++++.++.++|. + +|++
T Consensus 31 ~~~~v~~~dl---~g~~---------~----~~~~~l~~l~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~ 89 (190)
T PRK11071 31 PDIEMIVPQL---PPYP---------A----DAAELLESLVLEH--GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVV 89 (190)
T ss_pred CCCeEEeCCC---CCCH---------H----HHHHHHHHHHHHc--CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEE
Confidence 3799999655 3442 1 2333344444432 23589999999999999999999973 3 4667
Q ss_pred ccCCCCCC-C-------CcCcccccchhh--hhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHh
Q 002209 791 SGAYNRTL-T-------PFGFQNEDRTLW--EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (953)
Q Consensus 791 ~~~~d~~~-~-------~~~~~~~~~~~~--~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~ 860 (953)
+|..+... . ...+..+ ...+ ...+......+.. +. ...|++++||++|++|| +..+.++++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~-i~-~~~~v~iihg~~De~V~--~~~a~~~~~~~-- 162 (190)
T PRK11071 90 NPAVRPFELLTDYLGENENPYTGQ-QYVLESRHIYDLKVMQIDP-LE-SPDLIWLLQQTGDEVLD--YRQAVAYYAAC-- 162 (190)
T ss_pred CCCCCHHHHHHHhcCCcccccCCC-cEEEcHHHHHHHHhcCCcc-CC-ChhhEEEEEeCCCCcCC--HHHHHHHHHhc--
Confidence 77655200 0 0000000 0111 1122223233222 33 67789999999999999 99999999843
Q ss_pred CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 861 HGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 861 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
++++++|++|.+... +.+.+.+.+|+.
T Consensus 163 -----~~~~~~ggdH~f~~~---~~~~~~i~~fl~ 189 (190)
T PRK11071 163 -----RQTVEEGGNHAFVGF---ERYFNQIVDFLG 189 (190)
T ss_pred -----ceEEECCCCcchhhH---HHhHHHHHHHhc
Confidence 566789999998543 677888888864
|
|
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-11 Score=136.28 Aligned_cols=184 Identities=14% Similarity=0.099 Sum_probs=121.7
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
..+..|+++||.|+.+|. +|.|.+............|+.++++++.+.. ..+++.++||||||.+++.+++.+|+
T Consensus 85 ~~~~~L~~~G~~V~~~D~---~g~g~s~~~~~~~d~~~~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~ 159 (350)
T TIGR01836 85 SLVRGLLERGQDVYLIDW---GYPDRADRYLTLDDYINGYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPD 159 (350)
T ss_pred hHHHHHHHCCCeEEEEeC---CCCCHHHhcCCHHHHHHHHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCch
Confidence 457788999999999554 4555543333333333456888899998764 24689999999999999999999999
Q ss_pred cccEEEEcccCCCCCCCC-----c-------------C-ccc-----------ccchhh----------hhH---HHHH-
Q 002209 783 LFCCGIARSGAYNRTLTP-----F-------------G-FQN-----------EDRTLW----------EAT---STYV- 818 (953)
Q Consensus 783 ~~~a~v~~~~~~d~~~~~-----~-------------~-~~~-----------~~~~~~----------~~~---~~~~- 818 (953)
.++++|++++..+..... + + ... .....| .+. +.+.
T Consensus 160 ~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (350)
T TIGR01836 160 KIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMGNIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLR 239 (350)
T ss_pred heeeEEEeccccccCCCCchhhhhccccCHHHHHHhcCCCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHH
Confidence 999999998876632110 0 0 000 000000 000 0000
Q ss_pred --h--cC--c-----------------------------ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCC
Q 002209 819 --E--MS--P-----------------------------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA 863 (953)
Q Consensus 819 --~--~s--p-----------------------------~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~ 863 (953)
. .+ + ...+.++++|+|+++|++|..+| +..+..+++.+.. .
T Consensus 240 ~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~--~~~~~~~~~~~~~--~ 315 (350)
T TIGR01836 240 MEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPILNIYAERDHLVP--PDASKALNDLVSS--E 315 (350)
T ss_pred HHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECCEEccHHhCCCCeEEEecCCCCcCC--HHHHHHHHHHcCC--C
Confidence 0 00 0 01244678999999999999998 8888888887754 4
Q ss_pred cEEEEEeCCCCccCC--CcccHHHHHHHHHHHHHH
Q 002209 864 LCRLVILPFESHGYA--ARESIMHVLWETDRWLQK 896 (953)
Q Consensus 864 ~~~~~~~~~~~H~~~--~~~~~~~~~~~i~~fl~~ 896 (953)
+++++++++ ||... .....+.++..+.+||.+
T Consensus 316 ~~~~~~~~~-gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 316 DYTELSFPG-GHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred CeEEEEcCC-CCEEEEECchhHhhhhHHHHHHHHh
Confidence 578888885 77642 222357888999999875
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-11 Score=136.24 Aligned_cols=203 Identities=16% Similarity=0.106 Sum_probs=120.3
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhh---hHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR---FVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~---~~~~~~~D~~~~ 746 (953)
.|+||++||.+... ..+ ......|+ ++|.|+. +|.+|+|.+..... ........+.+.
T Consensus 105 ~p~vvllHG~~~~~--------------~~~-~~~~~~L~-~~~~vi~---~D~rG~G~S~~~~~~~~~~~~~~~~~~~~ 165 (402)
T PLN02894 105 APTLVMVHGYGASQ--------------GFF-FRNFDALA-SRFRVIA---IDQLGWGGSSRPDFTCKSTEETEAWFIDS 165 (402)
T ss_pred CCEEEEECCCCcch--------------hHH-HHHHHHHH-hCCEEEE---ECCCCCCCCCCCCcccccHHHHHHHHHHH
Confidence 68899999953110 001 12233444 4699999 55567777643321 111111122222
Q ss_pred -HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC-C-----------c-----------C
Q 002209 747 -VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-P-----------F-----------G 802 (953)
Q Consensus 747 -~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~-~-----------~-----------~ 802 (953)
.+++... +.+++.|+||||||++++.++.++|++++++|+++|..-.... . + .
T Consensus 166 i~~~~~~l---~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (402)
T PLN02894 166 FEEWRKAK---NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESN 242 (402)
T ss_pred HHHHHHHc---CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcC
Confidence 2333332 3468999999999999999999999999999988764211000 0 0 0
Q ss_pred ccc--------c------cchh--------------hhhHHHHH--------------------------hcCcc-cccC
Q 002209 803 FQN--------E------DRTL--------------WEATSTYV--------------------------EMSPF-MSAN 827 (953)
Q Consensus 803 ~~~--------~------~~~~--------------~~~~~~~~--------------------------~~sp~-~~~~ 827 (953)
+.. . .... .+..+.+. ...+. ..+.
T Consensus 243 ~~p~~~~~~~gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (402)
T PLN02894 243 FTPQKIIRGLGPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESAS 322 (402)
T ss_pred CCHHHHHHhccchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcc
Confidence 000 0 0000 00000000 01111 2356
Q ss_pred CCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccCC
Q 002209 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 828 ~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (953)
++++|+|+++|++|..+ +....++.+.+ +..+++++++++||.. ..++...+.+.+.+|++.++...
T Consensus 323 ~I~vP~liI~G~~D~i~---~~~~~~~~~~~---~~~~~~~~i~~aGH~~-~~E~P~~f~~~l~~~~~~~~~~~ 389 (402)
T PLN02894 323 EWKVPTTFIYGRHDWMN---YEGAVEARKRM---KVPCEIIRVPQGGHFV-FLDNPSGFHSAVLYACRKYLSPD 389 (402)
T ss_pred cCCCCEEEEEeCCCCCC---cHHHHHHHHHc---CCCCcEEEeCCCCCee-eccCHHHHHHHHHHHHHHhccCC
Confidence 78899999999999765 35555554443 3347899999999976 46778889999999999998654
|
|
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-11 Score=133.60 Aligned_cols=211 Identities=14% Similarity=0.104 Sum_probs=129.8
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|.++....+- . .|.||++||.+... ..| ...+..|++++ .|++ .|..|+
T Consensus 14 ~~g~~i~y~~~G--------~--g~~vvllHG~~~~~-----------~~w----~~~~~~L~~~~-~via---~D~~G~ 64 (295)
T PRK03592 14 VLGSRMAYIETG--------E--GDPIVFLHGNPTSS-----------YLW----RNIIPHLAGLG-RCLA---PDLIGM 64 (295)
T ss_pred ECCEEEEEEEeC--------C--CCEEEEECCCCCCH-----------HHH----HHHHHHHhhCC-EEEE---EcCCCC
Confidence 377776654431 1 36799999964211 011 13344566665 9999 455688
Q ss_pred CChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC---CC-
Q 002209 727 GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL---TP- 800 (953)
Q Consensus 727 G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~---~~- 800 (953)
|.+.... .......+|+.+.++.+ +.+++.++|||+||.+++.++.++|++++++|+++++..... ..
T Consensus 65 G~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~ 138 (295)
T PRK03592 65 GASDKPDIDYTFADHARYLDAWFDAL------GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPP 138 (295)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcch
Confidence 8775432 23455566666665554 236899999999999999999999999999999886422100 00
Q ss_pred --------cCccc--c------c--------c----hhh-hhHHHHH-----------------hcCc------------
Q 002209 801 --------FGFQN--E------D--------R----TLW-EATSTYV-----------------EMSP------------ 822 (953)
Q Consensus 801 --------~~~~~--~------~--------~----~~~-~~~~~~~-----------------~~sp------------ 822 (953)
+.... . . . ... +....+. ...+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (295)
T PRK03592 139 AVRELFQALRSPGEGEEMVLEENVFIERVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVE 218 (295)
T ss_pred hHHHHHHHHhCcccccccccchhhHHhhcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhh
Confidence 00000 0 0 0 000 0000000 0000
Q ss_pred --ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 823 --FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 823 --~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
...+.++++|+|++||++|..++ +....++...+.. ..++++++++||... .+..+.+.+.+.+|+.+..
T Consensus 219 ~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~~---~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~~~~ 290 (295)
T PRK03592 219 EYAQWLATSDVPKLLINAEPGAILT--TGAIRDWCRSWPN---QLEITVFGAGLHFAQ-EDSPEEIGAAIAAWLRRLR 290 (295)
T ss_pred HhHHHhccCCCCeEEEeccCCcccC--cHHHHHHHHHhhh---hcceeeccCcchhhh-hcCHHHHHHHHHHHHHHhc
Confidence 01235679999999999999985 5555555444332 257889999999875 5678889999999998753
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.9e-11 Score=113.42 Aligned_cols=271 Identities=14% Similarity=0.138 Sum_probs=175.1
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
..|++|...+ |...+--.++++ .++....+||++.||-.. ..+|.++|+.++.+.++...+..
T Consensus 20 hTIRfWqa~t----G~C~rTiqh~ds-qVNrLeiTpdk~~LAaa~----------~qhvRlyD~~S~np~Pv~t~e~h-- 82 (311)
T KOG0315|consen 20 HTIRFWQALT----GICSRTIQHPDS-QVNRLEITPDKKDLAAAG----------NQHVRLYDLNSNNPNPVATFEGH-- 82 (311)
T ss_pred ceeeeeehhc----CeEEEEEecCcc-ceeeEEEcCCcchhhhcc----------CCeeEEEEccCCCCCceeEEecc--
Confidence 4788998854 443322224433 788999999999998753 77899999999887666544432
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
+.-+..+.|--||++++... .| ++-.|| |+
T Consensus 83 ~kNVtaVgF~~dgrWMyTgs----------------------------------------eD-------gt~kIW--dlR 113 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGS----------------------------------------ED-------GTVKIW--DLR 113 (311)
T ss_pred CCceEEEEEeecCeEEEecC----------------------------------------CC-------ceEEEE--ecc
Confidence 11266888999999999651 11 233344 44
Q ss_pred CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCcccccccc
Q 002209 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRK 399 (953)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~ 399 (953)
.-..+++... ..+..+.+.|+-..|+.... .++|++||+... -..++...+. .
T Consensus 114 ~~~~qR~~~~~spVn~vvlhpnQteLis~dq-------------sg~irvWDl~~~~c~~~liPe~~------------~ 168 (311)
T KOG0315|consen 114 SLSCQRNYQHNSPVNTVVLHPNQTELISGDQ-------------SGNIRVWDLGENSCTHELIPEDD------------T 168 (311)
T ss_pred CcccchhccCCCCcceEEecCCcceEEeecC-------------CCcEEEEEccCCccccccCCCCC------------c
Confidence 4334444433 67788899998877776542 349999999754 3333333221 3
Q ss_pred CccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC---ceEE---eecccccCCeeeccCCceEEEE
Q 002209 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG---PEIL---HKLDLRYGGISWCDDSLALVYE 473 (953)
Q Consensus 400 ~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~---~~~l---~~~~~~~~~~~~SpDg~~l~~~ 473 (953)
.+++++..|||+.++-. ..++..|+|++ ..... .+.+ ..+.+......+|||+++|+..
T Consensus 169 ~i~sl~v~~dgsml~a~-------------nnkG~cyvW~l--~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAA-------------NNKGNCYVWRL--LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred ceeeEEEcCCCcEEEEe-------------cCCccEEEEEc--cCCCccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 34788999999987766 55778999997 32211 2222 2334455567899999999988
Q ss_pred EecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCe
Q 002209 474 SWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPF 553 (953)
Q Consensus 474 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (953)
+.+.+. +||..+.- .+.....+.....++. -.||-||++|+....+ ..
T Consensus 234 ssdktv--~iwn~~~~---~kle~~l~gh~rWvWd------c~FS~dg~YlvTassd---------------------~~ 281 (311)
T KOG0315|consen 234 SSDKTV--KIWNTDDF---FKLELVLTGHQRWVWD------CAFSADGEYLVTASSD---------------------HT 281 (311)
T ss_pred cCCceE--EEEecCCc---eeeEEEeecCCceEEe------eeeccCccEEEecCCC---------------------Cc
Confidence 766643 55655432 1223333333333333 5699999999877632 24
Q ss_pred EEEEECCCCceEEEeccC
Q 002209 554 LDLFDINTGSKERIWESD 571 (953)
Q Consensus 554 L~~~d~~~~~~~~l~~~~ 571 (953)
..+||+..++..+.+.+.
T Consensus 282 ~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 282 ARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred eeecccccCceeeecCCc
Confidence 778999999887777654
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.9e-11 Score=123.24 Aligned_cols=279 Identities=12% Similarity=0.123 Sum_probs=174.8
Q ss_pred hhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeec
Q 002209 105 IVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQG 184 (953)
Q Consensus 105 ~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~ 184 (953)
......+..++|+.||..||+.+.+ +.+.||+. +| .....+..
T Consensus 232 ~~~nkdVT~L~Wn~~G~~LatG~~~---------------------------------G~~riw~~--~G--~l~~tl~~ 274 (524)
T KOG0273|consen 232 VPSNKDVTSLDWNNDGTLLATGSED---------------------------------GEARIWNK--DG--NLISTLGQ 274 (524)
T ss_pred CCccCCcceEEecCCCCeEEEeecC---------------------------------cEEEEEec--Cc--hhhhhhhc
Confidence 3345678899999999999998875 35689987 44 22233322
Q ss_pred CCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecC
Q 002209 185 FPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (953)
Q Consensus 185 ~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 264 (953)
+.+.+....|+-+|.+|+-.. -...+-++|.-+|+..+........ .-.+.|-.+.+..-..
T Consensus 275 --HkgPI~slKWnk~G~yilS~~---------vD~ttilwd~~~g~~~q~f~~~s~~----~lDVdW~~~~~F~ts~--- 336 (524)
T KOG0273|consen 275 --HKGPIFSLKWNKKGTYILSGG---------VDGTTILWDAHTGTVKQQFEFHSAP----ALDVDWQSNDEFATSS--- 336 (524)
T ss_pred --cCCceEEEEEcCCCCEEEecc---------CCccEEEEeccCceEEEeeeeccCC----ccceEEecCceEeecC---
Confidence 224799999999999999843 3556778888888887665544321 2367887665533322
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CCceeEeCCC-CcccccccCC
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPP-AVYTSLDPSP 341 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g~~~~l~~~-~~~~~~~~Sp 341 (953)
..+.|+++-+ ++....+... +.+..+.|.|
T Consensus 337 -----------------------------------------------td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~ 369 (524)
T KOG0273|consen 337 -----------------------------------------------TDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP 369 (524)
T ss_pred -----------------------------------------------CCceEEEEEecCCCcceeeecccCceEEEEECC
Confidence 1133555555 4444444445 8888999999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
-|+.|+..+.+. ++.+|... +.....+..+ ...+..+.|||+|...- -.
T Consensus 370 tg~LLaS~SdD~-------------TlkiWs~~~~~~~~~l~~H-------------skei~t~~wsp~g~v~~----n~ 419 (524)
T KOG0273|consen 370 TGSLLASCSDDG-------------TLKIWSMGQSNSVHDLQAH-------------SKEIYTIKWSPTGPVTS----NP 419 (524)
T ss_pred CCceEEEecCCC-------------eeEeeecCCCcchhhhhhh-------------ccceeeEeecCCCCccC----CC
Confidence 999999888554 88888864 3222223222 13346788999987310 00
Q ss_pred cCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeec
Q 002209 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD 500 (953)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 500 (953)
..+...........|.+||+ ..|.....++++...+.+++|||||++|++.+.++ .+.+++..++ +...-.
T Consensus 420 ~~~~~l~sas~dstV~lwdv--~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg----~V~iws~~~~--~l~~s~- 490 (524)
T KOG0273|consen 420 NMNLMLASASFDSTVKLWDV--ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG----CVHIWSTKTG--KLVKSY- 490 (524)
T ss_pred cCCceEEEeecCCeEEEEEc--cCCceeEeeccCCCceEEEEecCCCcEEEecCCCC----eeEeccccch--heeEee-
Confidence 01111122244567888986 33444455678888999999999999999986554 3444454443 111111
Q ss_pred CCCccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 501 RSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 501 ~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
.....++. +.|+-+|.+|.....+
T Consensus 491 ~~~~~Ife------l~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 491 QGTGGIFE------LCWNAAGDKLGACASD 514 (524)
T ss_pred cCCCeEEE------EEEcCCCCEEEEEecC
Confidence 11111222 8899999888777643
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.7e-11 Score=115.58 Aligned_cols=273 Identities=14% Similarity=0.078 Sum_probs=165.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCC-CC-ceeeeecCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGK-LG-QEIEIQGFPD 187 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~-~~-~~~~l~~~~~ 187 (953)
++..+++.+.+..+++...+ +..+.+|++..|.. .+ ..++++++.
T Consensus 17 ~Vt~la~~~~~~~~l~sasr--------------------------------Dk~ii~W~L~~dd~~~G~~~r~~~GHs- 63 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASR--------------------------------DKTIIVWKLTSDDIKYGVPVRRLTGHS- 63 (315)
T ss_pred eEEEEEeecCCCceEEEccc--------------------------------ceEEEEEEeccCccccCceeeeeeccc-
Confidence 45567777777767666553 03568888865532 22 245665532
Q ss_pred CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 188 ~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
..+.....|+||++.+-.+ -+..|.++|+.+|+.++..-..... +-++++++|.+.|+..
T Consensus 64 -H~v~dv~~s~dg~~alS~s---------wD~~lrlWDl~~g~~t~~f~GH~~d----Vlsva~s~dn~qivSG------ 123 (315)
T KOG0279|consen 64 -HFVSDVVLSSDGNFALSAS---------WDGTLRLWDLATGESTRRFVGHTKD----VLSVAFSTDNRQIVSG------ 123 (315)
T ss_pred -eEecceEEccCCceEEecc---------ccceEEEEEecCCcEEEEEEecCCc----eEEEEecCCCceeecC------
Confidence 4789999999998765533 3568888999998877665544432 6789999999999954
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC---CcccccccCCCC
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP---AVYTSLDPSPDE 343 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~---~~~~~~~~SpDG 343 (953)
.+| ..|-+++. ++-...+... +.++.+.|||..
T Consensus 124 ----------------------------------SrD---------kTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 124 ----------------------------------SRD---------KTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ----------------------------------CCc---------ceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence 222 23445565 4433333322 678889999985
Q ss_pred c--EEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002209 344 K--YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 344 ~--~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
. .|+-.+ +.+.+.+||+++-+.+.... +....+..+++||||...++.
T Consensus 161 ~~p~Ivs~s-------------~DktvKvWnl~~~~l~~~~~------------gh~~~v~t~~vSpDGslcasG----- 210 (315)
T KOG0279|consen 161 SNPIIVSAS-------------WDKTVKVWNLRNCQLRTTFI------------GHSGYVNTVTVSPDGSLCASG----- 210 (315)
T ss_pred CCcEEEEcc-------------CCceEEEEccCCcchhhccc------------cccccEEEEEECCCCCEEecC-----
Confidence 3 333333 34589999999765543221 222344578999999977764
Q ss_pred CCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecC
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 501 (953)
+....+++||+ +.++.-.-......+.++.|||.--+|..+... .+.+.|++++. .+.+.
T Consensus 211 --------gkdg~~~LwdL---~~~k~lysl~a~~~v~sl~fspnrywL~~at~~-----sIkIwdl~~~~----~v~~l 270 (315)
T KOG0279|consen 211 --------GKDGEAMLWDL---NEGKNLYSLEAFDIVNSLCFSPNRYWLCAATAT-----SIKIWDLESKA----VVEEL 270 (315)
T ss_pred --------CCCceEEEEEc---cCCceeEeccCCCeEeeEEecCCceeEeeccCC-----ceEEEeccchh----hhhhc
Confidence 45678999997 333332222344456789999987776655322 24444554431 11111
Q ss_pred CC----c-cccCCCCCCCeEeccCCCEEEEEe
Q 002209 502 SS----E-DVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 502 ~~----~-~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.. . ...+.+..-.++||+||.+|+...
T Consensus 271 ~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 271 KLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred cccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 10 0 000111112278999999998775
|
|
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.6e-11 Score=131.88 Aligned_cols=205 Identities=14% Similarity=0.087 Sum_probs=127.6
Q ss_pred eEEEEEEcC-CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcC----c
Q 002209 639 KELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG----F 713 (953)
Q Consensus 639 ~~~~~~~~~-dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G----~ 713 (953)
.+.+++.+. -|.+...++|+|+++. . .++|+|+++||..+... . ........|.++| +
T Consensus 180 ~~~~~~~S~~Lg~~r~v~VY~P~~y~-~--~~~PvlyllDG~~w~~~------------~--~~~~~ld~li~~g~i~P~ 242 (411)
T PRK10439 180 AKEIIWKSERLGNSRRVWIYTTGDAA-P--EERPLAILLDGQFWAES------------M--PVWPALDSLTHRGQLPPA 242 (411)
T ss_pred eEEEEEEccccCCceEEEEEECCCCC-C--CCCCEEEEEECHHhhhc------------C--CHHHHHHHHHHcCCCCce
Confidence 455566543 4667889999999876 2 35999999999642210 0 0112344566666 4
Q ss_pred EEEEcCCCCCCCCCChh-hhhhhHHHHHHHHHHHHHHHHHcCC--CCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEc
Q 002209 714 AILGGPTTPIIGEGDEE-ANDRFVEQLVACAEAAVEEVVRRGV--AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (953)
Q Consensus 714 ~V~~~~~~~~~G~G~~~-~~~~~~~~~~~D~~~~~~~l~~~~~--~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (953)
+|+.++..+........ ....+.....++++ -++.++.. .|+++.+|+|+||||+.|++++.++|++|.+++++
T Consensus 243 ivV~id~~~~~~R~~el~~~~~f~~~l~~eLl---P~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~ 319 (411)
T PRK10439 243 VYLLIDAIDTTHRSQELPCNADFWLAVQQELL---PQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQ 319 (411)
T ss_pred EEEEECCCCcccccccCCchHHHHHHHHHHHH---HHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEe
Confidence 55665553221111111 12233333344444 44444433 47789999999999999999999999999999999
Q ss_pred ccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEe
Q 002209 791 SGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 870 (953)
Q Consensus 791 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~ 870 (953)
+|.+.+.... ....... .+.+... ....-...++|-+|..|..+ ...++++++.|+++|.++++.++
T Consensus 320 Sgs~ww~~~~---~~~~~~l---~~~l~~~----~~~~~~lr~~i~~G~~E~~~---~~~~~~l~~~L~~~G~~~~~~~~ 386 (411)
T PRK10439 320 SGSFWWPHRG---GQQEGVL---LEQLKAG----EVSARGLRIVLEAGRREPMI---MRANQALYAQLHPAGHSVFWRQV 386 (411)
T ss_pred ccceecCCcc---CCchhHH---HHHHHhc----ccCCCCceEEEeCCCCCchH---HHHHHHHHHHHHHCCCcEEEEEC
Confidence 9864321100 0000000 1111110 01112245888899998654 57789999999999999999999
Q ss_pred CCCCccC
Q 002209 871 PFESHGY 877 (953)
Q Consensus 871 ~~~~H~~ 877 (953)
+| ||.+
T Consensus 387 ~G-GHd~ 392 (411)
T PRK10439 387 DG-GHDA 392 (411)
T ss_pred CC-CcCH
Confidence 98 7976
|
|
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.8e-12 Score=131.12 Aligned_cols=166 Identities=12% Similarity=0.091 Sum_probs=103.6
Q ss_pred HcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEE
Q 002209 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (953)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (953)
..+|.|+++ +.+|+|.+..... .++.+.++.+.+.. .+++.++||||||.+++.++.++|++++++|+
T Consensus 28 ~~~~~vi~~---d~~G~G~s~~~~~------~~~~~~~~~~~~~~---~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il 95 (245)
T TIGR01738 28 SAHFTLHLV---DLPGHGRSRGFGP------LSLADAAEAIAAQA---PDPAIWLGWSLGGLVALHIAATHPDRVRALVT 95 (245)
T ss_pred ccCeEEEEe---cCCcCccCCCCCC------cCHHHHHHHHHHhC---CCCeEEEEEcHHHHHHHHHHHHCHHhhheeeE
Confidence 467999994 5567777643221 12223333333331 25899999999999999999999999999998
Q ss_pred cccCCCCCCC-Cc--Ccc------------cccc-h--hh-------------------hh------------HHH---H
Q 002209 790 RSGAYNRTLT-PF--GFQ------------NEDR-T--LW-------------------EA------------TST---Y 817 (953)
Q Consensus 790 ~~~~~d~~~~-~~--~~~------------~~~~-~--~~-------------------~~------------~~~---~ 817 (953)
+++....... .+ ... .... . .+ .. ... +
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (245)
T TIGR01738 96 VASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPTARQDARALKQTLLARPTPNVQVLQAGLEIL 175 (245)
T ss_pred ecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchHHHHHHHHhhccCCCCHHHHHHHHHHh
Confidence 7654321000 00 000 0000 0 00 00 000 0
Q ss_pred HhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 818 ~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
...+....+.++++|+|+++|++|..+| ++..+.+.+.++ .+++++++++||... .++...+.+.+.+|+
T Consensus 176 ~~~~~~~~l~~i~~Pvlii~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 176 ATVDLRQPLQNISVPFLRLYGYLDGLVP--AKVVPYLDKLAP----HSELYIFAKAAHAPF-LSHAEAFCALLVAFK 245 (245)
T ss_pred hcccHHHHHhcCCCCEEEEeecCCcccC--HHHHHHHHHhCC----CCeEEEeCCCCCCcc-ccCHHHHHHHHHhhC
Confidence 0011122456789999999999999998 777777766554 358889999999864 466778888888774
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=133.45 Aligned_cols=195 Identities=18% Similarity=0.137 Sum_probs=114.5
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh-----hhHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-----RFVEQLVACAE 744 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-----~~~~~~~~D~~ 744 (953)
.|.||++||++..+. .+.......+.+.||.|+.+|. +|+|.+.... .......+|+.
T Consensus 25 ~~~vl~~hG~~g~~~--------------~~~~~~~~~l~~~g~~vi~~d~---~G~G~s~~~~~~~~~~~~~~~~~~~~ 87 (288)
T TIGR01250 25 KIKLLLLHGGPGMSH--------------EYLENLRELLKEEGREVIMYDQ---LGCGYSDQPDDSDELWTIDYFVDELE 87 (288)
T ss_pred CCeEEEEcCCCCccH--------------HHHHHHHHHHHhcCCEEEEEcC---CCCCCCCCCCcccccccHHHHHHHHH
Confidence 467888999642110 0111222233445999999555 5777664321 11334444444
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC-----C--cCcccc-----------
Q 002209 745 AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-----P--FGFQNE----------- 806 (953)
Q Consensus 745 ~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~-----~--~~~~~~----------- 806 (953)
+.++.+ +.+++.++||||||.+++.++..+|++++++|+.+++...... . ..+...
T Consensus 88 ~~~~~~------~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (288)
T TIGR01250 88 EVREKL------GLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEAS 161 (288)
T ss_pred HHHHHc------CCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhc
Confidence 433322 2357999999999999999999999999999988764321000 0 000000
Q ss_pred ---cch-------hhh-----------h-H---------HHHH---------------hcCcccccCCCCCcEEEEEeCC
Q 002209 807 ---DRT-------LWE-----------A-T---------STYV---------------EMSPFMSANKLKKPILLVHGEE 840 (953)
Q Consensus 807 ---~~~-------~~~-----------~-~---------~~~~---------------~~sp~~~~~~i~~P~Li~~G~~ 840 (953)
... .+. . . ..+. .......+.++++|+|+++|+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~ 241 (288)
T TIGR01250 162 GDYDNPEYQEAVEVFYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEF 241 (288)
T ss_pred cCcchHHHHHHHHHHHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCC
Confidence 000 000 0 0 0000 0011123456889999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
|. ++ +..+..+.+.+.. .++++++++||... .+....+.+.+.+||+
T Consensus 242 D~-~~--~~~~~~~~~~~~~----~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 242 DT-MT--PEAAREMQELIAG----SRLVVFPDGSHMTM-IEDPEVYFKLLSDFIR 288 (288)
T ss_pred Cc-cC--HHHHHHHHHhccC----CeEEEeCCCCCCcc-cCCHHHHHHHHHHHhC
Confidence 97 45 6666666655532 47889999999875 4567788888888863
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=130.62 Aligned_cols=195 Identities=16% Similarity=0.094 Sum_probs=112.9
Q ss_pred cEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHH-HHH
Q 002209 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAA-VEE 749 (953)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~-~~~ 749 (953)
|+||++||..... ..| ......|+ +||.|+.+ +..|+|.+..........+.+.... +..
T Consensus 2 ~~vv~~hG~~~~~-----------~~~----~~~~~~L~-~~~~v~~~---d~~g~G~s~~~~~~~~~~~~~~~~~~~~~ 62 (251)
T TIGR03695 2 PVLVFLHGFLGSG-----------ADW----QALIELLG-PHFRCLAI---DLPGHGSSQSPDEIERYDFEEAAQDILAT 62 (251)
T ss_pred CEEEEEcCCCCch-----------hhH----HHHHHHhc-ccCeEEEE---cCCCCCCCCCCCccChhhHHHHHHHHHHH
Confidence 6799999953110 111 12334455 89999994 4467777644322112222333332 333
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC-----cC----------------------
Q 002209 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-----FG---------------------- 802 (953)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~-----~~---------------------- 802 (953)
+.+. .+.+++.++|||+||.+++.++.++|+.+++++++++........ ..
T Consensus 63 ~~~~--~~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (251)
T TIGR03695 63 LLDQ--LGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWY 140 (251)
T ss_pred HHHH--cCCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHh
Confidence 4333 235689999999999999999999999999999887653211000 00
Q ss_pred ----cccccchhhhh----------------HHHHH------hcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHH
Q 002209 803 ----FQNEDRTLWEA----------------TSTYV------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (953)
Q Consensus 803 ----~~~~~~~~~~~----------------~~~~~------~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~ 856 (953)
+.......... ...+. ..+....+.++++|+|+++|++|..++ ....+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~---~~~~~--- 214 (251)
T TIGR03695 141 QQPLFASQKNLPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV---QIAKE--- 214 (251)
T ss_pred cCceeeecccCChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH---HHHHH---
Confidence 00000000000 00000 011223356789999999999997642 33333
Q ss_pred HHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 857 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
+......++++.+|++||... .++.+.+.+.+.+||
T Consensus 215 -~~~~~~~~~~~~~~~~gH~~~-~e~~~~~~~~i~~~l 250 (251)
T TIGR03695 215 -MQKLLPNLTLVIIANAGHNIH-LENPEAFAKILLAFL 250 (251)
T ss_pred -HHhcCCCCcEEEEcCCCCCcC-ccChHHHHHHHHHHh
Confidence 333334568889999999864 455677777788776
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-11 Score=134.33 Aligned_cols=172 Identities=16% Similarity=0.217 Sum_probs=106.0
Q ss_pred HcCcEEEEcCCCCCCCCCChhhhhh---------hHHHHHHHHHHHHHHHHHcCCCCCCcEE-EEEeChHHHHHHHHHHh
Q 002209 710 ARGFAILGGPTTPIIGEGDEEANDR---------FVEQLVACAEAAVEEVVRRGVAHPSKIA-VGGHSYGAFMTANLLAH 779 (953)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~---------~~~~~~~D~~~~~~~l~~~~~~d~~~i~-l~G~S~GG~~a~~~a~~ 779 (953)
.++|.|+++ |.+|+|.+..... .....++|+.+ .+.+.- +-+++. |+||||||.+++.++.+
T Consensus 103 ~~~~~Via~---Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~---~l~~~l--gi~~~~~lvG~SmGG~vAl~~A~~ 174 (360)
T PRK06489 103 ASKYFIILP---DGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQYR---LVTEGL--GVKHLRLILGTSMGGMHAWMWGEK 174 (360)
T ss_pred ccCCEEEEe---CCCCCCCCCCCCcCCCCCCCcccHHHHHHHHHH---HHHHhc--CCCceeEEEEECHHHHHHHHHHHh
Confidence 578999994 5567787743321 12233333333 232321 224664 89999999999999999
Q ss_pred CCCcccEEEEcccCCCCC------C-----------CCc---Cccccc---c--------------------hhh-hh--
Q 002209 780 APHLFCCGIARSGAYNRT------L-----------TPF---GFQNED---R--------------------TLW-EA-- 813 (953)
Q Consensus 780 ~p~~~~a~v~~~~~~d~~------~-----------~~~---~~~~~~---~--------------------~~~-~~-- 813 (953)
+|++++++|++++..... . ..+ .+.... . ... ..
T Consensus 175 ~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (360)
T PRK06489 175 YPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQPPSLKRANPMFAIATSGGTLAYQAQAPTRAAAD 254 (360)
T ss_pred CchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHH
Confidence 999999999887532100 0 000 000000 0 000 00
Q ss_pred --------------HHHHH-------hcCcccccCCCCCcEEEEEeCCCCCCCCchHHH--HHHHHHHHhCCCcEEEEEe
Q 002209 814 --------------TSTYV-------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS--DRFFNALKGHGALCRLVIL 870 (953)
Q Consensus 814 --------------~~~~~-------~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~--~~~~~~l~~~g~~~~~~~~ 870 (953)
...+. ..+....+.+|++|+|+++|++|..+| ++.+ +++.+.+.. .+++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~~D~~~p--~~~~~~~~la~~ip~----a~l~~i 328 (360)
T PRK06489 255 KLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSADDERNP--PETGVMEAALKRVKH----GRLVLI 328 (360)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecCCCcccC--hhhHHHHHHHHhCcC----CeEEEE
Confidence 00010 111223456789999999999999988 7765 566555543 489999
Q ss_pred CCC----CccCCCcccHHHHHHHHHHHHHHh
Q 002209 871 PFE----SHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 871 ~~~----~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
|++ ||... +..+.+.+.+.+||++.
T Consensus 329 ~~a~~~~GH~~~--e~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 329 PASPETRGHGTT--GSAKFWKAYLAEFLAQV 357 (360)
T ss_pred CCCCCCCCcccc--cCHHHHHHHHHHHHHhc
Confidence 996 99873 57888889999999865
|
|
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.9e-12 Score=125.78 Aligned_cols=156 Identities=21% Similarity=0.160 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC---------CcCccccc----
Q 002209 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---------PFGFQNED---- 807 (953)
Q Consensus 741 ~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~---------~~~~~~~~---- 807 (953)
+-+..|++||.+++.+++++|+|+|.|.||.+|+.+++.+| .++|+|+++|..-.... ++.+....
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~~ 82 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISKF 82 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG-
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhhc
Confidence 34578999999999999999999999999999999999997 79999999874211000 00000000
Q ss_pred -----chh--hhhHHHH-H--hcCcccccCCCCCcEEEEEeCCCCCCCCchHH-HHHHHHHHHhCCCc--EEEEEeCCCC
Q 002209 808 -----RTL--WEATSTY-V--EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQ-SDRFFNALKGHGAL--CRLVILPFES 874 (953)
Q Consensus 808 -----~~~--~~~~~~~-~--~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~-~~~~~~~l~~~g~~--~~~~~~~~~~ 874 (953)
... +...... . .....-.+.++++|+|+++|++|...| ... +..+.+.|++.+.+ ++++.||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~Wp--S~~~a~~i~~rL~~~~~~~~~~~l~Y~~aG 160 (213)
T PF08840_consen 83 SWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWP--SSEMAEQIEERLKAAGFPHNVEHLSYPGAG 160 (213)
T ss_dssp EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS---HHHHHHHHHHHHHCTT-----EEEEETTB-
T ss_pred eecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccc--hHHHHHHHHHHHHHhCCCCcceEEEcCCCC
Confidence 000 0000000 0 001112356789999999999999987 555 45777888888765 8889999999
Q ss_pred ccCCCcc---------------------------cHHHHHHHHHHHHHHhcc
Q 002209 875 HGYAARE---------------------------SIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 875 H~~~~~~---------------------------~~~~~~~~i~~fl~~~l~ 899 (953)
|.+.... ..++.++.+++||+++|+
T Consensus 161 H~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 161 HLIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp S---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ceecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9764110 235677889999999985
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=136.35 Aligned_cols=169 Identities=18% Similarity=0.169 Sum_probs=102.9
Q ss_pred HHcCcEEEEcCCCCCCCCCChhh--hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccE
Q 002209 709 LARGFAILGGPTTPIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (953)
Q Consensus 709 a~~G~~V~~~~~~~~~G~G~~~~--~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (953)
+.++|.|+. ++..|+|.+.. ..........++...+ +. ++.+++.++|||+||.+++.++..+|+++++
T Consensus 154 l~~~~~v~~---~d~~g~G~s~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~ 224 (371)
T PRK14875 154 LAAGRPVIA---LDLPGHGASSKAVGAGSLDELAAAVLAFL----DA--LGIERAHLVGHSMGGAVALRLAARAPQRVAS 224 (371)
T ss_pred HhcCCEEEE---EcCCCCCCCCCCCCCCCHHHHHHHHHHHH----Hh--cCCccEEEEeechHHHHHHHHHHhCchheeE
Confidence 446699999 45567776632 1222334444443333 22 3456899999999999999999999989999
Q ss_pred EEEcccCCCCCCCCcCc----ccc-----------------c--c-hhhhh----------H---HHHHh---------c
Q 002209 787 GIARSGAYNRTLTPFGF----QNE-----------------D--R-TLWEA----------T---STYVE---------M 820 (953)
Q Consensus 787 ~v~~~~~~d~~~~~~~~----~~~-----------------~--~-~~~~~----------~---~~~~~---------~ 820 (953)
+|++++..........+ ... . . ..... . ..+.. .
T Consensus 225 lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (371)
T PRK14875 225 LTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTRQMVEDLLKYKRLDGVDDALRALADALFAGGRQRV 304 (371)
T ss_pred EEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCHHHHHHHHHHhccccHHHHHHHHHHHhccCcccch
Confidence 99988753211000000 000 0 0 00000 0 00000 1
Q ss_pred CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 821 sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
+....+.++++|+|++||++|..+| +.++..++ ..+++.+++++||... .++...+.+.+.+||.+
T Consensus 305 ~~~~~l~~i~~Pvlii~g~~D~~vp--~~~~~~l~-------~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 305 DLRDRLASLAIPVLVIWGEQDRIIP--AAHAQGLP-------DGVAVHVLPGAGHMPQ-MEAAADVNRLLAEFLGK 370 (371)
T ss_pred hHHHHHhcCCCCEEEEEECCCCccC--HHHHhhcc-------CCCeEEEeCCCCCChh-hhCHHHHHHHHHHHhcc
Confidence 1112456789999999999999998 77665442 2368889999999764 45666777777777754
|
|
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-11 Score=128.33 Aligned_cols=167 Identities=12% Similarity=0.044 Sum_probs=102.9
Q ss_pred HcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEE
Q 002209 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (953)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (953)
+..|.|++ .|..|+|.+.....+ ..++ .++.+.+. ..+++.++||||||++++.++.++|++++.+|+
T Consensus 37 ~~~~~vi~---~Dl~G~G~S~~~~~~---~~~~---~~~~l~~~---~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil 104 (256)
T PRK10349 37 SSHFTLHL---VDLPGFGRSRGFGAL---SLAD---MAEAVLQQ---APDKAIWLGWSLGGLVASQIALTHPERVQALVT 104 (256)
T ss_pred hcCCEEEE---ecCCCCCCCCCCCCC---CHHH---HHHHHHhc---CCCCeEEEEECHHHHHHHHHHHhChHhhheEEE
Confidence 45699999 555678877433211 1122 22233332 236899999999999999999999999999998
Q ss_pred cccCCCCCCC---CcCc-----------ccccchh---h------------hhH----------------------HHHH
Q 002209 790 RSGAYNRTLT---PFGF-----------QNEDRTL---W------------EAT----------------------STYV 818 (953)
Q Consensus 790 ~~~~~d~~~~---~~~~-----------~~~~~~~---~------------~~~----------------------~~~~ 818 (953)
+++....... .... ....... + ... ..+.
T Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (256)
T PRK10349 105 VASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETARQDARALKKTVLALPMPEVDVLNGGLEILK 184 (256)
T ss_pred ecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCchHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Confidence 8653211000 0000 0000000 0 000 0001
Q ss_pred hcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 819 EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 819 ~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
..+....+.++++|+|+++|++|..+| .+.+..+.+.+.. .+++++|++||... .++.+.+.+.+.+|-+
T Consensus 185 ~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~i~~----~~~~~i~~~gH~~~-~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 185 TVDLRQPLQNVSMPFLRLYGYLDGLVP--RKVVPMLDKLWPH----SESYIFAKAAHAPF-ISHPAEFCHLLVALKQ 254 (256)
T ss_pred hCccHHHHhhcCCCeEEEecCCCccCC--HHHHHHHHHhCCC----CeEEEeCCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 112223456789999999999999988 7666655555433 48999999999864 5677788888777743
|
|
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-10 Score=125.45 Aligned_cols=196 Identities=13% Similarity=0.085 Sum_probs=113.4
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~ 749 (953)
.|.||++||.+.. ...+........++|.|+++ |..|+|.+..+... .....+..+.+..
T Consensus 34 ~~~iv~lHG~~~~----------------~~~~~~~~~~l~~~~~vi~~---D~~G~G~S~~~~~~-~~~~~~~~~~~~~ 93 (286)
T PRK03204 34 GPPILLCHGNPTW----------------SFLYRDIIVALRDRFRCVAP---DYLGFGLSERPSGF-GYQIDEHARVIGE 93 (286)
T ss_pred CCEEEEECCCCcc----------------HHHHHHHHHHHhCCcEEEEE---CCCCCCCCCCCCcc-ccCHHHHHHHHHH
Confidence 3679999995311 01112222334567999994 55677776543221 1223444444444
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC-CC----------CcC----cc------c---
Q 002209 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT-LT----------PFG----FQ------N--- 805 (953)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~-~~----------~~~----~~------~--- 805 (953)
+.+.. +.+++.++||||||.+++.++..+|++++++|+.++..-.. .. ... +. .
T Consensus 94 ~~~~~--~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (286)
T PRK03204 94 FVDHL--GLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLI 171 (286)
T ss_pred HHHHh--CCCCEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhc
Confidence 44432 34689999999999999999999999999999876542100 00 000 00 0
Q ss_pred --cc-chhh-hhHHHHH-----------------hc---Cc-ccc----cCC--CCCcEEEEEeCCCCCCCCchHH-HHH
Q 002209 806 --ED-RTLW-EATSTYV-----------------EM---SP-FMS----ANK--LKKPILLVHGEEDNNSGTLTMQ-SDR 853 (953)
Q Consensus 806 --~~-~~~~-~~~~~~~-----------------~~---sp-~~~----~~~--i~~P~Li~~G~~D~~v~~~~~~-~~~ 853 (953)
.. ...- +....+. .. .+ +.. +.+ +++|+|+++|++|..++ +.. .+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~--~~~~~~~ 249 (286)
T PRK03204 172 PAGTEHRPSSAVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFR--PKTILPR 249 (286)
T ss_pred cccccCCCCHHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccC--cHHHHHH
Confidence 00 0000 0000000 00 00 000 011 27999999999999875 544 455
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
+.+.+.. .++++++++||... .+..+.+.+.+.+||
T Consensus 250 ~~~~ip~----~~~~~i~~aGH~~~-~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 250 LRATFPD----HVLVELPNAKHFIQ-EDAPDRIAAAIIERF 285 (286)
T ss_pred HHHhcCC----CeEEEcCCCccccc-ccCHHHHHHHHHHhc
Confidence 5555543 48889999999874 677888888888886
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-10 Score=118.36 Aligned_cols=207 Identities=14% Similarity=0.095 Sum_probs=129.4
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCC
Q 002209 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (953)
Q Consensus 642 ~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~ 721 (953)
+.+++..| .+.++++.|.+ ..+.|+||++||... ..+.+.......+..|+++||.|+.+
T Consensus 3 ~~l~~~~g-~~~~~~~~p~~-----~~~~~~VlllHG~g~-----------~~~~~~~~~~~la~~La~~Gy~Vl~~--- 62 (266)
T TIGR03101 3 FFLDAPHG-FRFCLYHPPVA-----VGPRGVVIYLPPFAE-----------EMNKSRRMVALQARAFAAGGFGVLQI--- 62 (266)
T ss_pred EEecCCCC-cEEEEEecCCC-----CCCceEEEEECCCcc-----------cccchhHHHHHHHHHHHHCCCEEEEE---
Confidence 45666555 46788887764 234789999999421 00111111112356788899999995
Q ss_pred CCCCCCChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC
Q 002209 722 PIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (953)
Q Consensus 722 ~~~G~G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~ 799 (953)
|..|+|.+... .......++|+.++++++.+++ ..+++|+||||||.+++.++.++|+.++++|+.+|+.+....
T Consensus 63 Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~ 139 (266)
T TIGR03101 63 DLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQ 139 (266)
T ss_pred CCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHH
Confidence 44677776432 2234567899999999998764 368999999999999999999999999999999987652110
Q ss_pred C-----cC-----cccccc----hhh------------------hhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCc
Q 002209 800 P-----FG-----FQNEDR----TLW------------------EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTL 847 (953)
Q Consensus 800 ~-----~~-----~~~~~~----~~~------------------~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~ 847 (953)
- .. ...... ..- +....+...+....+. ...++|++.-..+.--+ .
T Consensus 140 l~~~lrl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~-~ 217 (266)
T TIGR03101 140 LQQFLRLRLVARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVP-KNCPVHWFEVRPEEGAT-L 217 (266)
T ss_pred HHHHHHHHHHHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCC-CCCceEEEEeccccCCC-C
Confidence 0 00 000000 000 0011222222211111 14567887664332211 1
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002209 848 TMQSDRFFNALKGHGALCRLVILPFE 873 (953)
Q Consensus 848 ~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (953)
.....++.+.++..|+.++...|+|.
T Consensus 218 ~~~~~~l~~~~~~~g~~v~~~~~~~~ 243 (266)
T TIGR03101 218 SPVFSRLGEQWVQSGVEVTVDLVPGP 243 (266)
T ss_pred CHHHHHHHHHHHHcCCeEeeeecCCc
Confidence 45678899999999999999999986
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-09 Score=111.12 Aligned_cols=292 Identities=15% Similarity=0.153 Sum_probs=166.8
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
..|++|++.+ ..++...+.....-.......|+|++++|+..... ++.+...-|.+|.+.|+...+-.......
T Consensus 16 ~gI~v~~ld~--~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~----~~~ggvaay~iD~~~G~Lt~ln~~~~~g~ 89 (346)
T COG2706 16 QGIYVFNLDT--KTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEP----GEEGGVAAYRIDPDDGRLTFLNRQTLPGS 89 (346)
T ss_pred CceEEEEEeC--cccccchhhhccccCCCceEEECCCCCEEEEEEec----CCcCcEEEEEEcCCCCeEEEeeccccCCC
Confidence 3789999852 11222111112222367889999999988776642 24566777888887787665533222110
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
....++.++||+.++.+. |..+.+-++.+
T Consensus 90 --~p~yvsvd~~g~~vf~An------------------------------------------------Y~~g~v~v~p~~ 119 (346)
T COG2706 90 --PPCYVSVDEDGRFVFVAN------------------------------------------------YHSGSVSVYPLQ 119 (346)
T ss_pred --CCeEEEECCCCCEEEEEE------------------------------------------------ccCceEEEEEcc
Confidence 013567889999888761 12233444444
Q ss_pred -CCceeEeCC---C-----------CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCC
Q 002209 322 -DGTVKEIGP---P-----------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL 386 (953)
Q Consensus 322 -~g~~~~l~~---~-----------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~ 386 (953)
+|.+..+.. . ...-...+.|||++|+..... ...|++++++.+..........
T Consensus 120 ~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG------------~Dri~~y~~~dg~L~~~~~~~v 187 (346)
T COG2706 120 ADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG------------TDRIFLYDLDDGKLTPADPAEV 187 (346)
T ss_pred cCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC------------CceEEEEEcccCcccccccccc
Confidence 343322211 0 113456799999999877632 2378999998544333222211
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe---eccc------c
Q 002209 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---KLDL------R 457 (953)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~---~~~~------~ 457 (953)
.| ..|+|.+.|+|+|+ ++|.+.+.+ +.|.++..++. .++.+.+. ..+. .
T Consensus 188 ---~~------G~GPRHi~FHpn~k-~aY~v~EL~-----------stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 188 ---KP------GAGPRHIVFHPNGK-YAYLVNELN-----------STVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred ---CC------CCCcceEEEcCCCc-EEEEEeccC-----------CEEEEEEEcCC-CceEEEeeeeccCccccCCCCc
Confidence 11 25789999999998 566644432 24444443122 34444432 1111 2
Q ss_pred cCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcE
Q 002209 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTY 537 (953)
Q Consensus 458 ~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~ 537 (953)
...+..|+||+.|+.+ ++.-....++.++.+++ ....+...+.+... |.. +.++++|++|+....+.
T Consensus 246 ~aaIhis~dGrFLYas-NRg~dsI~~f~V~~~~g--~L~~~~~~~teg~~--PR~--F~i~~~g~~Liaa~q~s------ 312 (346)
T COG2706 246 AAAIHISPDGRFLYAS-NRGHDSIAVFSVDPDGG--KLELVGITPTEGQF--PRD--FNINPSGRFLIAANQKS------ 312 (346)
T ss_pred eeEEEECCCCCEEEEe-cCCCCeEEEEEEcCCCC--EEEEEEEeccCCcC--Ccc--ceeCCCCCEEEEEccCC------
Confidence 2347889999988765 44433346777787775 33333222222111 111 56899999998876432
Q ss_pred EEEecCCCCCCCCCCeEEEEECCCCceEEEec
Q 002209 538 ILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 538 ~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~ 569 (953)
+.-.+|..|-++|++..+..
T Consensus 313 ------------d~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 313 ------------DNITVFERDKETGRLTLLGR 332 (346)
T ss_pred ------------CcEEEEEEcCCCceEEeccc
Confidence 34568888888998876644
|
|
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.4e-11 Score=119.03 Aligned_cols=225 Identities=19% Similarity=0.157 Sum_probs=140.3
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCC--
Q 002209 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG-- 725 (953)
Q Consensus 648 dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G-- 725 (953)
+|...++++|.|++... ..|+||++||+... ..++.+. + ++ -......||.|+.++..+..-
T Consensus 43 ~g~~r~y~l~vP~g~~~----~apLvv~LHG~~~s---gag~~~~-----s--g~--d~lAd~~gFlV~yPdg~~~~wn~ 106 (312)
T COG3509 43 NGLKRSYRLYVPPGLPS----GAPLVVVLHGSGGS---GAGQLHG-----T--GW--DALADREGFLVAYPDGYDRAWNA 106 (312)
T ss_pred CCCccceEEEcCCCCCC----CCCEEEEEecCCCC---hHHhhcc-----c--ch--hhhhcccCcEEECcCccccccCC
Confidence 67789999999998532 25999999996422 1122221 1 11 122245799999976654332
Q ss_pred --CCChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCC-CCCCCC
Q 002209 726 --EGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY-NRTLTP 800 (953)
Q Consensus 726 --~G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~-d~~~~~ 800 (953)
.+..+.+. .-.-.++..+.+.++.|..+..||+.||+|.|.|.||.|+.++++.+|++|.|+..+++.. +-..
T Consensus 107 ~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a-- 184 (312)
T COG3509 107 NGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVA-- 184 (312)
T ss_pred CcccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCcc--
Confidence 22221121 2244678888899999999999999999999999999999999999999999999998864 1100
Q ss_pred cCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHh--------------------
Q 002209 801 FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG-------------------- 860 (953)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~-------------------- 860 (953)
.... .+..-...--..+|......=..| |-+|..|..|+ ..+..+.+.++..
T Consensus 185 --~~~~--rp~~~m~~~G~~Dp~~p~~gG~~~--~g~g~~~~~v~--~~~~~~~Waa~ng~~~~p~~~~~~~~~~~~~~~ 256 (312)
T COG3509 185 --CTPP--RPVSVMAFHGTADPLNPYHGGGVP--IGRGQRDGVVS--AADLAARWAAVNGCQAGPDTAELPDVGDGTDYD 256 (312)
T ss_pred --cCCC--CchhHHHhcCCCCCCCCCCCCCcc--ccccccccccc--HHHHHHHHHHhcCCCCCCcccccCCCcccceee
Confidence 0000 000000000011222111111223 77888888776 6666666666532
Q ss_pred ---CCCcEEEEEeCCCCccCCCccc-----------HHHHHHHHHHHHHHhc
Q 002209 861 ---HGALCRLVILPFESHGYAARES-----------IMHVLWETDRWLQKYC 898 (953)
Q Consensus 861 ---~g~~~~~~~~~~~~H~~~~~~~-----------~~~~~~~i~~fl~~~l 898 (953)
.+.++++..+.+.||.+..... .....++|.+||..+-
T Consensus 257 ~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~~ 308 (312)
T COG3509 257 TCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQHR 308 (312)
T ss_pred ccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhcc
Confidence 1246789999999999853111 1235678899988764
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.8e-10 Score=117.88 Aligned_cols=245 Identities=16% Similarity=0.144 Sum_probs=151.8
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+..+.|+|||+.|++... ...+++++.++++........... +..+.|+|+++.|++..
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~---------~g~i~i~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~------ 70 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSG---------DGTIKVWDLETGELLRTLKGHTGP----VRDVAASADGTYLASGS------ 70 (289)
T ss_pred CCEEEEEEcCCCCEEEEeec---------CcEEEEEEeeCCCcEEEEecCCcc----eeEEEECCCCCEEEEEc------
Confidence 46889999999999998542 557777787776543322222221 55889999998888661
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC-CcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDG~~ 345 (953)
..+.|.++++ ++ ....+... ..+..+.|+|+++.
T Consensus 71 -------------------------------------------~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (289)
T cd00200 71 -------------------------------------------SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107 (289)
T ss_pred -------------------------------------------CCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCE
Confidence 1246777787 54 34444444 57888999999876
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
++....+ +.+.+|++..+. ...+..+. ..+..+.|+|+++.++..
T Consensus 108 ~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~-------- 153 (289)
T cd00200 108 LSSSSRD-------------KTIKVWDVETGKCLTTLRGHT-------------DWVNSVAFSPDGTFVASS-------- 153 (289)
T ss_pred EEEecCC-------------CeEEEEECCCcEEEEEeccCC-------------CcEEEEEEcCcCCEEEEE--------
Confidence 6655422 389999998443 33333211 234678999997654443
Q ss_pred cccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCc
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 504 (953)
...+.+.++++ ..+.....+......+..+.|+|+++.|++....+ .+.+++...+ +..........
T Consensus 154 -----~~~~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~----~i~i~d~~~~--~~~~~~~~~~~ 220 (289)
T cd00200 154 -----SQDGTIKLWDL--RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG----TIKLWDLSTG--KCLGTLRGHEN 220 (289)
T ss_pred -----cCCCcEEEEEc--cccccceeEecCccccceEEECCCcCEEEEecCCC----cEEEEECCCC--ceecchhhcCC
Confidence 22457888886 22333344444555678899999999888876532 4666666553 22222211111
Q ss_pred cccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEec
Q 002209 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 505 ~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~ 569 (953)
.+.. +.|+|++.+++....+ ..|++||+.+++......
T Consensus 221 ~i~~------~~~~~~~~~~~~~~~~---------------------~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 221 GVNS------VAFSPDGYLLASGSED---------------------GTIRVWDLRTGECVQTLS 258 (289)
T ss_pred ceEE------EEEcCCCcEEEEEcCC---------------------CcEEEEEcCCceeEEEcc
Confidence 2222 6789997766655411 248999998766554443
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-09 Score=120.45 Aligned_cols=229 Identities=17% Similarity=0.193 Sum_probs=149.6
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+...+|+--|+||||... +..+|-+|+-.+..-.---+.... .+..++.||||+.|+...
T Consensus 309 ~I~t~~~N~tGDWiA~g~~--------klgQLlVweWqsEsYVlKQQgH~~----~i~~l~YSpDgq~iaTG~------- 369 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCS--------KLGQLLVWEWQSESYVLKQQGHSD----RITSLAYSPDGQLIATGA------- 369 (893)
T ss_pred eeeEEEecccCCEEEEcCC--------ccceEEEEEeeccceeeecccccc----ceeeEEECCCCcEEEecc-------
Confidence 6778899999999999542 345666666555322111111111 166899999999999651
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDG~~l 346 (953)
..+.+-++|. .| -...++++ ..++.+.|+.+|+.|
T Consensus 370 ------------------------------------------eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~l 407 (893)
T KOG0291|consen 370 ------------------------------------------EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVL 407 (893)
T ss_pred ------------------------------------------CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEE
Confidence 1234556676 66 44556666 889999999999999
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
+.++.++ .+..||+.. ...|..+... |+.+ ..++-.|.|. |++.- .
T Consensus 408 lssSLDG-------------tVRAwDlkRYrNfRTft~P~-----p~Qf-------scvavD~sGe-lV~AG-~------ 454 (893)
T KOG0291|consen 408 LSSSLDG-------------TVRAWDLKRYRNFRTFTSPE-----PIQF-------SCVAVDPSGE-LVCAG-A------ 454 (893)
T ss_pred EEeecCC-------------eEEeeeecccceeeeecCCC-----ceee-------eEEEEcCCCC-EEEee-c------
Confidence 8888554 899999973 4455554421 1111 2244445564 33330 0
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCcc
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 505 (953)
...-.|++|++ .+|.....|.++++.+.+++|+|+|..|+..+|+++. ++|-+=...+..++..+.. +
T Consensus 455 ----~d~F~IfvWS~--qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTV--RiW~if~s~~~vEtl~i~s----d 522 (893)
T KOG0291|consen 455 ----QDSFEIFVWSV--QTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTV--RIWDIFSSSGTVETLEIRS----D 522 (893)
T ss_pred ----cceEEEEEEEe--ecCeeeehhcCCCCcceeeEEccccCeEEeccccceE--EEEEeeccCceeeeEeecc----c
Confidence 11226888886 4454455678899999999999999999999999876 8887765543233333322 2
Q ss_pred ccCCCCCCCeEeccCCCEEEEEeee
Q 002209 506 VYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 506 ~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
+.. ++|+|||+.|+....+
T Consensus 523 vl~------vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 523 VLA------VSFRPDGKELAVATLD 541 (893)
T ss_pred eeE------EEEcCCCCeEEEEEec
Confidence 222 8899999999988754
|
|
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=118.21 Aligned_cols=164 Identities=19% Similarity=0.229 Sum_probs=123.0
Q ss_pred HHHHHHHcCcEEEEcCCCCCCCCCCh---hhhhhh-----HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002209 704 SVLLWLARGFAILGGPTTPIIGEGDE---EANDRF-----VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (953)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~---~~~~~~-----~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (953)
.+..++..||.|+.||.+...-+.-+ .....| .+....|+.+.++||..++ +..+|+++|.+|||.++..
T Consensus 59 ~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv~ 136 (242)
T KOG3043|consen 59 GADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVVT 136 (242)
T ss_pred HHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEEEE
Confidence 35567789999999888643211111 111222 2345788999999999765 4679999999999999999
Q ss_pred HHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHH
Q 002209 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (953)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~ 855 (953)
+.+..| .|.|+++..|.+- + ..-+.++++|+|++.|+.|..+| +....++.
T Consensus 137 ~~~~~~-~f~a~v~~hps~~-------------------------d-~~D~~~vk~Pilfl~ae~D~~~p--~~~v~~~e 187 (242)
T KOG3043|consen 137 LSAKDP-EFDAGVSFHPSFV-------------------------D-SADIANVKAPILFLFAELDEDVP--PKDVKAWE 187 (242)
T ss_pred eeccch-hheeeeEecCCcC-------------------------C-hhHHhcCCCCEEEEeecccccCC--HHHHHHHH
Confidence 888886 7999988877421 0 12345678999999999999998 88888888
Q ss_pred HHHHhCCC-cEEEEEeCCCCccCCCc----------ccHHHHHHHHHHHHHHhc
Q 002209 856 NALKGHGA-LCRLVILPFESHGYAAR----------ESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 856 ~~l~~~g~-~~~~~~~~~~~H~~~~~----------~~~~~~~~~i~~fl~~~l 898 (953)
++++.... ..++.+|+|.+|+|..+ ...++.++.+..||.+|+
T Consensus 188 e~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 188 EKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred HHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 88886532 35789999999998631 124678889999999987
|
|
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-11 Score=131.79 Aligned_cols=181 Identities=12% Similarity=0.044 Sum_probs=112.3
Q ss_pred HHHHcCcEEEEcCCCCCCCCCChhhhhh----h-H-----HHHHHHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHH
Q 002209 707 LWLARGFAILGGPTTPIIGEGDEEANDR----F-V-----EQLVACAEAAVEEVVRRGVAHPSK-IAVGGHSYGAFMTAN 775 (953)
Q Consensus 707 ~la~~G~~V~~~~~~~~~G~G~~~~~~~----~-~-----~~~~~D~~~~~~~l~~~~~~d~~~-i~l~G~S~GG~~a~~ 775 (953)
.|...+|.|+++ |.+|+|.+..+.. + . ....+|+.+....+.+.-. .++ ..|+||||||++++.
T Consensus 66 ~l~~~~~~vi~~---D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lg--i~~~~~lvG~S~GG~va~~ 140 (339)
T PRK07581 66 ALDPEKYFIIIP---NMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEKFG--IERLALVVGWSMGAQQTYH 140 (339)
T ss_pred ccCcCceEEEEe---cCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHHhC--CCceEEEEEeCHHHHHHHH
Confidence 345678999994 5567777643211 1 0 1134555544444544222 357 478999999999999
Q ss_pred HHHhCCCcccEEEEcccCCCCCC----------------CCc---Cccc--c---------c------chhhh-------
Q 002209 776 LLAHAPHLFCCGIARSGAYNRTL----------------TPF---GFQN--E---------D------RTLWE------- 812 (953)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~d~~~----------------~~~---~~~~--~---------~------~~~~~------- 812 (953)
++.++|++++++|++++...... ..+ .+.. . . ...+.
T Consensus 141 ~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (339)
T PRK07581 141 WAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPAFNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAM 220 (339)
T ss_pred HHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhcccc
Confidence 99999999999998865321000 000 0000 0 0 00000
Q ss_pred ---h-HH---HH-Hh----cC-------------------------cccccCCCCCcEEEEEeCCCCCCCCchHHHHHHH
Q 002209 813 ---A-TS---TY-VE----MS-------------------------PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (953)
Q Consensus 813 ---~-~~---~~-~~----~s-------------------------p~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~ 855 (953)
. .+ .+ .. .+ ....+.++++|+|+++|++|..+| +..+..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~I~~PtLvI~G~~D~~~p--~~~~~~l~ 298 (339)
T PRK07581 221 GYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGSITAKTFVMPISTDLYFP--PEDCEAEA 298 (339)
T ss_pred ChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhcCCCCEEEEEeCCCCCCC--HHHHHHHH
Confidence 0 00 00 00 00 112345688999999999999998 88887776
Q ss_pred HHHHhCCCcEEEEEeCC-CCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 856 NALKGHGALCRLVILPF-ESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 856 ~~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
+.+.. .+++++++ +||.. ..+....+...+.+|+.+++.
T Consensus 299 ~~ip~----a~l~~i~~~~GH~~-~~~~~~~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 299 ALIPN----AELRPIESIWGHLA-GFGQNPADIAFIDAALKELLA 338 (339)
T ss_pred HhCCC----CeEEEeCCCCCccc-cccCcHHHHHHHHHHHHHHHh
Confidence 66643 48889998 89976 356667888999999999873
|
|
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.6e-11 Score=120.27 Aligned_cols=229 Identities=16% Similarity=0.135 Sum_probs=138.5
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC
Q 002209 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (953)
Q Consensus 643 ~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (953)
.++..||..+...+..++. ....|+||.+||-. |+.+. .+-......+.++||.|+..+.
T Consensus 53 ~v~~pdg~~~~ldw~~~p~-----~~~~P~vVl~HGL~-----------G~s~s--~y~r~L~~~~~~rg~~~Vv~~~-- 112 (345)
T COG0429 53 RLETPDGGFIDLDWSEDPR-----AAKKPLVVLFHGLE-----------GSSNS--PYARGLMRALSRRGWLVVVFHF-- 112 (345)
T ss_pred EEEcCCCCEEEEeeccCcc-----ccCCceEEEEeccC-----------CCCcC--HHHHHHHHHHHhcCCeEEEEec--
Confidence 4555677666655555432 12269999999932 21111 1222345566789999999555
Q ss_pred CCCCCChhh--hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHH-HHHHHHHHhCC-CcccEEEEcccCCCCCC
Q 002209 723 IIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGA-FMTANLLAHAP-HLFCCGIARSGAYNRTL 798 (953)
Q Consensus 723 ~~G~G~~~~--~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG-~~a~~~a~~~p-~~~~a~v~~~~~~d~~~ 798 (953)
+|.+.+.. +.-+.....+|+..+++++.++.. +.++..+|.|+|| +++.+++-.-- -.+.|+++++..+|...
T Consensus 113 -Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~ 189 (345)
T COG0429 113 -RGCSGEANTSPRLYHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEA 189 (345)
T ss_pred -ccccCCcccCcceecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHH
Confidence 55544421 233445567999999999988643 5799999999999 55555544321 13566666655443110
Q ss_pred ------CCcC--------------------------ccc-------ccchhhh--------------hHHHHHhcCcccc
Q 002209 799 ------TPFG--------------------------FQN-------EDRTLWE--------------ATSTYVEMSPFMS 825 (953)
Q Consensus 799 ------~~~~--------------------------~~~-------~~~~~~~--------------~~~~~~~~sp~~~ 825 (953)
..+. ... ..++.|+ ..+.|...|.+..
T Consensus 190 ~~~~l~~~~s~~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~ 269 (345)
T COG0429 190 CAYRLDSGFSLRLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPL 269 (345)
T ss_pred HHHHhcCchhhhhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhcccccc
Confidence 0000 000 0012222 2466777899999
Q ss_pred cCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC-CC-cc-cHH-HHHHHHHHHHHHhcc
Q 002209 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY-AA-RE-SIM-HVLWETDRWLQKYCV 899 (953)
Q Consensus 826 ~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~-~~-~~-~~~-~~~~~i~~fl~~~l~ 899 (953)
+.+|.+|+||+|..+|++++ +.. .--.+.. ....+.+.+.+.+||.- .. .. +.. -.-+++.+||+.++.
T Consensus 270 L~~Ir~PtLii~A~DDP~~~--~~~-iP~~~~~--~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~~ 342 (345)
T COG0429 270 LPKIRKPTLIINAKDDPFMP--PEV-IPKLQEM--LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFLE 342 (345)
T ss_pred ccccccceEEEecCCCCCCC--hhh-CCcchhc--CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHHh
Confidence 99999999999999999987 432 1111111 34568899999899952 22 11 111 344578999998763
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-10 Score=122.18 Aligned_cols=228 Identities=11% Similarity=0.121 Sum_probs=144.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|+--|.||||.... . ++|-||+... +.--+..-.+-.
T Consensus 309 ~I~t~~~N~tGDWiA~g~~k--------------------------l------gQLlVweWqs-----EsYVlKQQgH~~ 351 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSK--------------------------L------GQLLVWEWQS-----ESYVLKQQGHSD 351 (893)
T ss_pred eeeEEEecccCCEEEEcCCc--------------------------c------ceEEEEEeec-----cceeeecccccc
Confidence 56678888889999998763 1 2566666632 112222111223
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....+||||+.||... +...+-+||..+|-+..-...+.. .+..+.|+.+|+.|+.++-
T Consensus 352 ~i~~l~YSpDgq~iaTG~---------eDgKVKvWn~~SgfC~vTFteHts----~Vt~v~f~~~g~~llssSL------ 412 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGA---------EDGKVKVWNTQSGFCFVTFTEHTS----GVTAVQFTARGNVLLSSSL------ 412 (893)
T ss_pred ceeeEEECCCCcEEEecc---------CCCcEEEEeccCceEEEEeccCCC----ceEEEEEEecCCEEEEeec------
Confidence 688899999999999843 466788888888876533222222 2778999999999987621
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC--CcccccccCCCCcE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP--AVYTSLDPSPDEKY 345 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~--~~~~~~~~SpDG~~ 345 (953)
.+.+..+|+ .+ .-+.++.+ .....++..|.|..
T Consensus 413 -------------------------------------------DGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel 449 (893)
T KOG0291|consen 413 -------------------------------------------DGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL 449 (893)
T ss_pred -------------------------------------------CCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE
Confidence 122334455 33 33444444 45566777777975
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEe-ccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL-CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l-~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
+.....+ .-+|++|++.+|+...+ ..+. +-+..+.|+|+|..|+-.
T Consensus 450 V~AG~~d------------~F~IfvWS~qTGqllDiLsGHE-------------gPVs~l~f~~~~~~LaS~-------- 496 (893)
T KOG0291|consen 450 VCAGAQD------------SFEIFVWSVQTGQLLDILSGHE-------------GPVSGLSFSPDGSLLASG-------- 496 (893)
T ss_pred EEeeccc------------eEEEEEEEeecCeeeehhcCCC-------------CcceeeEEccccCeEEec--------
Confidence 5544422 13899999997766543 3332 234578899999966544
Q ss_pred cccccccCCeEEEEecCCCCC-CCceEEeecccccCCeeeccCCceEEEEEecc
Q 002209 425 AKVEVTPRDIIYTQQAEPVQG-EGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g-~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
+-...|.+|+. .+. ++.+.+ ....++..++|+|||+.|+.+.-++
T Consensus 497 -----SWDkTVRiW~i--f~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 497 -----SWDKTVRIWDI--FSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDG 542 (893)
T ss_pred -----cccceEEEEEe--eccCceeeeE-eeccceeEEEEcCCCCeEEEEEecc
Confidence 33456778876 332 333333 3344567799999999999876543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-09 Score=108.03 Aligned_cols=253 Identities=15% Similarity=0.196 Sum_probs=161.4
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+....||+||..++.... ...|.++|...|+..+.......+ +..+.|......+.++
T Consensus 15 ~~i~sl~fs~~G~~litss~---------dDsl~LYd~~~g~~~~ti~skkyG----~~~~~Fth~~~~~i~s------- 74 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSE---------DDSLRLYDSLSGKQVKTINSKKYG----VDLACFTHHSNTVIHS------- 74 (311)
T ss_pred CceeEEEecCCCCEEEEecC---------CCeEEEEEcCCCceeeEeeccccc----ccEEEEecCCceEEEc-------
Confidence 46888999999999998553 457888898888877666655433 6677787555555544
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCC-C-CcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-P-AVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~-~-~~~~~~~~SpDG~~ 345 (953)
++. ....|..+++ +.+..+... . ..+.++..||-+..
T Consensus 75 -------------------------------Stk---------~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~ 114 (311)
T KOG1446|consen 75 -------------------------------STK---------EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDT 114 (311)
T ss_pred -------------------------------cCC---------CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCe
Confidence 111 1135667788 665444444 3 78899999998887
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
.+-++.++ .|.+||+......-+.... +..-.+|.|.| ++|.+.
T Consensus 115 FlS~S~D~-------------tvrLWDlR~~~cqg~l~~~--------------~~pi~AfDp~G--LifA~~------- 158 (311)
T KOG1446|consen 115 FLSSSLDK-------------TVRLWDLRVKKCQGLLNLS--------------GRPIAAFDPEG--LIFALA------- 158 (311)
T ss_pred EEecccCC-------------eEEeeEecCCCCceEEecC--------------CCcceeECCCC--cEEEEe-------
Confidence 77776554 8999999854433222211 11236788988 445411
Q ss_pred ccccccCCeEEEEecCCCCCCCceEE--e-ecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCC
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEIL--H-KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l--~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 502 (953)
.+.+.|.++|+...+.|..+.. . ........+.||||||.|+.+.+.+ .++++|.-.|. -...+....
T Consensus 159 ----~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s----~~~~lDAf~G~-~~~tfs~~~ 229 (311)
T KOG1446|consen 159 ----NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS----FIYLLDAFDGT-VKSTFSGYP 229 (311)
T ss_pred ----cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC----cEEEEEccCCc-EeeeEeecc
Confidence 3344788888743444443333 2 2233456799999999999886543 68888887763 111111111
Q ss_pred CccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccC
Q 002209 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (953)
Q Consensus 503 ~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~ 571 (953)
... ..+ -...|+|||++++....+ .+|++|++++|+....|.+.
T Consensus 230 ~~~--~~~--~~a~ftPds~Fvl~gs~d---------------------g~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 230 NAG--NLP--LSATFTPDSKFVLSGSDD---------------------GTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred CCC--Ccc--eeEEECCCCcEEEEecCC---------------------CcEEEEEcCCCcEeeEecCC
Confidence 111 000 116799999999877632 24999999999988887775
|
|
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.8e-11 Score=129.78 Aligned_cols=170 Identities=19% Similarity=0.171 Sum_probs=107.3
Q ss_pred HHcCcEEEEcCCCCCCCCCChhhhh-h-hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccE
Q 002209 709 LARGFAILGGPTTPIIGEGDEEAND-R-FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (953)
Q Consensus 709 a~~G~~V~~~~~~~~~G~G~~~~~~-~-~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (953)
.+++|.|+++| ..|+|.+.... . ......+|+.+.++.+. .+++.++|||+||++++.++.++|+++++
T Consensus 109 l~~~~~v~~~D---~~G~G~S~~~~~~~~~~~~a~~l~~~i~~~~------~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~ 179 (354)
T PLN02578 109 LAKKYKVYALD---LLGFGWSDKALIEYDAMVWRDQVADFVKEVV------KEPAVLVGNSLGGFTALSTAVGYPELVAG 179 (354)
T ss_pred HhcCCEEEEEC---CCCCCCCCCcccccCHHHHHHHHHHHHHHhc------cCCeEEEEECHHHHHHHHHHHhChHhcce
Confidence 35679999955 45777764432 1 12333455555555542 35899999999999999999999999999
Q ss_pred EEEcccCCCCCCCC------------cC---cccc----------------cc--h--------hhhh------------
Q 002209 787 GIARSGAYNRTLTP------------FG---FQNE----------------DR--T--------LWEA------------ 813 (953)
Q Consensus 787 ~v~~~~~~d~~~~~------------~~---~~~~----------------~~--~--------~~~~------------ 813 (953)
+|++++........ .. +... .. . .+.+
T Consensus 180 lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (354)
T PLN02578 180 VALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAKQPSRIESVLKSVYKDKSNVDDYLVESI 259 (354)
T ss_pred EEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCcccCCHHHHHHH
Confidence 99886532110000 00 0000 00 0 0000
Q ss_pred ---------HHHHH-----------hcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002209 814 ---------TSTYV-----------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (953)
Q Consensus 814 ---------~~~~~-----------~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (953)
.+.+. .......+.++++|+|+++|++|..|| ...+.++.+.+.. .+++++ ++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~--~~~~~~l~~~~p~----a~l~~i-~~ 332 (354)
T PLN02578 260 TEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVG--PAKAEKIKAFYPD----TTLVNL-QA 332 (354)
T ss_pred HhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCC--HHHHHHHHHhCCC----CEEEEe-CC
Confidence 00000 001123456789999999999999988 8887777666543 467777 47
Q ss_pred CccCCCcccHHHHHHHHHHHHH
Q 002209 874 SHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 874 ~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
||... .+..+.+.+.+.+|++
T Consensus 333 GH~~~-~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 333 GHCPH-DEVPEQVNKALLEWLS 353 (354)
T ss_pred CCCcc-ccCHHHHHHHHHHHHh
Confidence 99874 6777888899999975
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.3e-11 Score=120.76 Aligned_cols=228 Identities=16% Similarity=0.150 Sum_probs=142.4
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecC--CeEEEEEecCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN--STLLVCTIPLLR 266 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD--g~~l~~~~~~~~ 266 (953)
..+....||+||+.|+..+- +|...||-++ .....+........ +..+.|.|. +..|+..+
T Consensus 176 rPis~~~fS~ds~~laT~sw-------sG~~kvW~~~--~~~~~~~l~gH~~~----v~~~~fhP~~~~~~lat~s---- 238 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSW-------SGLVKVWSVP--QCNLLQTLRGHTSR----VGAAVFHPVDSDLNLATAS---- 238 (459)
T ss_pred CcceeeEeecCCCeEEEeec-------CCceeEeecC--CcceeEEEeccccc----eeeEEEccCCCccceeeec----
Confidence 36777899999999998663 3455666544 44444444433333 778999998 44565441
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccCCCCcE
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDG~~ 345 (953)
.| +.-.||.++-.-....++.. ..+..++|.|+|++
T Consensus 239 ------------------------------------~D-------gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~ 275 (459)
T KOG0272|consen 239 ------------------------------------AD-------GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKF 275 (459)
T ss_pred ------------------------------------cC-------CceeeeccCCCcchhhhhcchhhheeeeecCCCce
Confidence 11 33345544433345556555 77889999999999
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
|+.++.+. .-.+||+.++..-.+.. ++..++.+++|.|||..++-.
T Consensus 276 L~TasfD~-------------tWRlWD~~tk~ElL~QE------------GHs~~v~~iaf~~DGSL~~tG--------- 321 (459)
T KOG0272|consen 276 LGTASFDS-------------TWRLWDLETKSELLLQE------------GHSKGVFSIAFQPDGSLAATG--------- 321 (459)
T ss_pred eeeccccc-------------chhhcccccchhhHhhc------------ccccccceeEecCCCceeecc---------
Confidence 99888554 66789998654322221 334677899999999844332
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCcc
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 505 (953)
+-...-.+||+ -+|...-.|..+...+.++.|||+|-.|+..+.+++. ++|.+.... ....+ ..+...
T Consensus 322 ----GlD~~~RvWDl--Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~--kVWDLR~r~---~ly~i-pAH~nl 389 (459)
T KOG0272|consen 322 ----GLDSLGRVWDL--RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTC--KVWDLRMRS---ELYTI-PAHSNL 389 (459)
T ss_pred ----Cccchhheeec--ccCcEEEEecccccceeeEeECCCceEEeecCCCCcE--EEeeecccc---cceec-ccccch
Confidence 11223356775 3454444556677778899999999999988776644 777765433 22222 222222
Q ss_pred ccCCCCCCCeEecc-CCCEEEEEe
Q 002209 506 VYSDPGSPMMRRTS-TGTYVIAKI 528 (953)
Q Consensus 506 ~~~~~~~p~~~~Sp-DG~~l~~~~ 528 (953)
+.. +.|+| .|.+|+...
T Consensus 390 VS~------Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 390 VSQ------VKYSPQEGYFLVTAS 407 (459)
T ss_pred hhh------eEecccCCeEEEEcc
Confidence 222 78998 556666554
|
|
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-11 Score=113.73 Aligned_cols=213 Identities=17% Similarity=0.196 Sum_probs=140.2
Q ss_pred CcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC----C
Q 002209 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI----I 724 (953)
Q Consensus 649 g~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~----~ 724 (953)
+-.+.--+|+|+.+..+| +.|++.|+-|-. .....|..-. .+.+.-.+.|++|+.||.-+. .
T Consensus 25 ~c~Mtf~vylPp~a~~~k--~~P~lf~LSGLT-----------CT~~Nfi~Ks-g~qq~As~hgl~vV~PDTSPRG~~v~ 90 (283)
T KOG3101|consen 25 KCSMTFGVYLPPDAPRGK--RCPVLFYLSGLT-----------CTHENFIEKS-GFQQQASKHGLAVVAPDTSPRGVEVA 90 (283)
T ss_pred ccceEEEEecCCCcccCC--cCceEEEecCCc-----------ccchhhHhhh-hHHHhHhhcCeEEECCCCCCCccccC
Confidence 345777889998866555 499999998832 2222222111 112233568999999775221 1
Q ss_pred CCCCh--------hh----hhhhH--HHHHHHHHH-HHHHHH-HcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEE
Q 002209 725 GEGDE--------EA----NDRFV--EQLVACAEA-AVEEVV-RRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (953)
Q Consensus 725 G~G~~--------~~----~~~~~--~~~~~D~~~-~~~~l~-~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (953)
|..++ +. .+.|. ..+++-+.. ..+.|. ..-.+|+.+++|+||||||.-|+.++.+.|.+++.+-
T Consensus 91 g~~eswDFG~GAGFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvS 170 (283)
T KOG3101|consen 91 GDDESWDFGQGAGFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVS 170 (283)
T ss_pred CCcccccccCCceeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCccccccee
Confidence 11111 00 01111 112211111 112222 1234889999999999999999999999999999999
Q ss_pred EcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCC---CCcEEEEEeCCCCCCCCchHH--HHHHHHHHHhC-C
Q 002209 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL---KKPILLVHGEEDNNSGTLTMQ--SDRFFNALKGH-G 862 (953)
Q Consensus 789 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~P~Li~~G~~D~~v~~~~~~--~~~~~~~l~~~-g 862 (953)
+.+|+++....+|+-....+.+.++...|+.+++-..+++. ..-+||-+|..|...+ ++ ...+.++.++. .
T Consensus 171 AFAPI~NP~~cpWGqKAf~gYLG~~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~---~qLlPe~l~~a~~~~~~ 247 (283)
T KOG3101|consen 171 AFAPICNPINCPWGQKAFTGYLGDNKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA---EQLLPENLLEACKATWQ 247 (283)
T ss_pred ccccccCcccCcchHHHhhcccCCChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh---hhcChHHHHHHhhcccc
Confidence 99999999999998777777777777788888776555544 4569999999998753 33 35666666644 3
Q ss_pred CcEEEEEeCCCCccCC
Q 002209 863 ALCRLVILPFESHGYA 878 (953)
Q Consensus 863 ~~~~~~~~~~~~H~~~ 878 (953)
.++.+...+|-+|.+.
T Consensus 248 ~~v~~r~~~gyDHSYy 263 (283)
T KOG3101|consen 248 APVVFRLQEGYDHSYY 263 (283)
T ss_pred ccEEEEeecCCCccee
Confidence 6788888999999764
|
|
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.3e-11 Score=131.25 Aligned_cols=240 Identities=20% Similarity=0.274 Sum_probs=155.2
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
+....+.++.+||++|.+.||+|++ .++.|+++..+=.|+..... ..............|+++||+|+
T Consensus 17 ~~~~~v~V~MRDGvrL~~dIy~Pa~-----~g~~Pvll~~~~~Py~k~~~-------~~~~~~~~~p~~~~~aa~GYavV 84 (563)
T COG2936 17 YIERDVMVPMRDGVRLAADIYRPAG-----AGPLPVLLSRTRLPYRKRNG-------TFGPQLSALPQPAWFAAQGYAVV 84 (563)
T ss_pred eeeeeeeEEecCCeEEEEEEEccCC-----CCCCceeEEeeccccccccc-------cCcchhhcccccceeecCceEEE
Confidence 4455678889999999999999986 35699999988444332210 00000000000126899999999
Q ss_pred EcCCCCCCCCCChhhhhhhHH-HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 717 GGPTTPIIGEGDEEANDRFVE-QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
.. +.+|.|.|++...... ++.+|..+.|+||.++++.+ .+|+.+|.||+|+..+++|+..|.-.||++...+..|
T Consensus 85 ~q---DvRG~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D 160 (563)
T COG2936 85 NQ---DVRGRGGSEGVFDPESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVD 160 (563)
T ss_pred Ee---cccccccCCcccceeccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeecccccccc
Confidence 94 5567777776543323 58999999999999999986 6999999999999999999999989999999888766
Q ss_pred CCCC--------------CcC-----cc-----cc----------cc-hhhhh----------------------HHHHH
Q 002209 796 RTLT--------------PFG-----FQ-----NE----------DR-TLWEA----------------------TSTYV 818 (953)
Q Consensus 796 ~~~~--------------~~~-----~~-----~~----------~~-~~~~~----------------------~~~~~ 818 (953)
.... .|. .. .. .+ ..|.. .+.+.
T Consensus 161 ~y~d~~~~~G~~~~~~~~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~ddfW~ 240 (563)
T COG2936 161 RYRDDAFYGGGAELNFNLGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRDDFWR 240 (563)
T ss_pred ccccccccCcchhhhhhHHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCccchhh
Confidence 2110 000 00 00 00 00100 01122
Q ss_pred hcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCccc-----HHHHHHHHHHH
Q 002209 819 EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES-----IMHVLWETDRW 893 (953)
Q Consensus 819 ~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~-----~~~~~~~i~~f 893 (953)
+.+-.....++++|+|++.|-.|.. ...+.++|..++.. +.++++-|- .|....... .....+...+|
T Consensus 241 ~~~~~~d~~~i~vP~L~i~gW~D~~----l~~~~~~~~~~~~r--~~~lvvgPw-~H~~~~~~~~~~~y~~~al~~~~~~ 313 (563)
T COG2936 241 RGDRVADLSKIKVPALVIGGWSDGY----LHTAIKLFAFLRSR--PVKLVVGPW-THGGPEWEGPGKDYGATALSWQDDF 313 (563)
T ss_pred ccCcccccccCCCcEEEEccccccc----ccchHHHhhhcccC--CceeEEccc-ccCCCcccccccchhhhhhhhhHhh
Confidence 2233445677899999999999975 45677888888764 356666664 665432222 23344445566
Q ss_pred HHHhcc
Q 002209 894 LQKYCV 899 (953)
Q Consensus 894 l~~~l~ 899 (953)
|..++.
T Consensus 314 l~~~~~ 319 (563)
T COG2936 314 LDAYLD 319 (563)
T ss_pred hhHhhh
Confidence 655554
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-09 Score=115.05 Aligned_cols=296 Identities=11% Similarity=0.124 Sum_probs=157.5
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
.++++++.. . ......+.+ ...+.-..+||.|-+||- ++....|.+||....+- +...+-..+.
T Consensus 40 sv~ir~i~~-~--~~~~iYtEH--~~~vtVAkySPsG~yiAS---------GD~sG~vRIWdtt~~~h--iLKnef~v~a 103 (603)
T KOG0318|consen 40 SVIIRNIDN-P--ASVDIYTEH--AHQVTVAKYSPSGFYIAS---------GDVSGKVRIWDTTQKEH--ILKNEFQVLA 103 (603)
T ss_pred EEEEEECCC-c--cceeeeccc--cceeEEEEeCCCceEEee---------cCCcCcEEEEeccCcce--eeeeeeeecc
Confidence 567888732 1 112222222 236777899999998876 55566777777554221 1111111122
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccc----cchhhhhhcCCcchhhhhhhhccceEE--
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDII----QVRTFQDLLKDEYDEDLFDYYATTQLV-- 317 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~~~~~~~~~~l~-- 317 (953)
+.+..++|+.||++|+.+...++. .|..+.-+.+..+. ..|.+ +.- . ...++-+
T Consensus 104 G~I~Di~Wd~ds~RI~avGEGrer---------fg~~F~~DSG~SvGei~GhSr~i-----ns~---~---~KpsRPfRi 163 (603)
T KOG0318|consen 104 GPIKDISWDFDSKRIAAVGEGRER---------FGHVFLWDSGNSVGEITGHSRRI-----NSV---D---FKPSRPFRI 163 (603)
T ss_pred cccccceeCCCCcEEEEEecCccc---------eeEEEEecCCCccceeeccceeE-----eee---e---ccCCCceEE
Confidence 237799999999999977322111 11111111110000 00000 000 0 0001111
Q ss_pred -------EEEc-CCceeEeC----CC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ceEEEecc
Q 002209 318 -------LVSL-DGTVKEIG----PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCD 383 (953)
Q Consensus 318 -------~~~~-~g~~~~l~----~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~ 383 (953)
.+.. .|.+.++. +. ..+..+.+||||++.+.+..++ ++++||-.+ ..+..+..
T Consensus 164 ~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg-------------ki~iyDGktge~vg~l~~ 230 (603)
T KOG0318|consen 164 ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG-------------KIYIYDGKTGEKVGELED 230 (603)
T ss_pred EeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc-------------cEEEEcCCCccEEEEecC
Confidence 1222 34333221 12 5677899999999999888554 899998864 44555654
Q ss_pred CCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeeccc---ccCC
Q 002209 384 LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL---RYGG 460 (953)
Q Consensus 384 ~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~---~~~~ 460 (953)
.. .+.+++..++||||+++++-. +....+-+||+ .+..-.+.+.-+.. .--+
T Consensus 231 ~~----------aHkGsIfalsWsPDs~~~~T~-------------SaDkt~KIWdV--s~~slv~t~~~~~~v~dqqvG 285 (603)
T KOG0318|consen 231 SD----------AHKGSIFALSWSPDSTQFLTV-------------SADKTIKIWDV--STNSLVSTWPMGSTVEDQQVG 285 (603)
T ss_pred CC----------CccccEEEEEECCCCceEEEe-------------cCCceEEEEEe--eccceEEEeecCCchhceEEE
Confidence 22 234677899999999998776 45556777776 23322233322211 1123
Q ss_pred eeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEE
Q 002209 461 ISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILL 540 (953)
Q Consensus 461 ~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~ 540 (953)
..|- ...|+..+-.+ .|-.++++.+ .+..+...+...+.. +..+|||++|+....++
T Consensus 286 ~lWq--kd~lItVSl~G----~in~ln~~d~--~~~~~i~GHnK~ITa------Ltv~~d~~~i~SgsyDG--------- 342 (603)
T KOG0318|consen 286 CLWQ--KDHLITVSLSG----TINYLNPSDP--SVLKVISGHNKSITA------LTVSPDGKTIYSGSYDG--------- 342 (603)
T ss_pred EEEe--CCeEEEEEcCc----EEEEecccCC--ChhheecccccceeE------EEEcCCCCEEEeeccCc---------
Confidence 5665 22333332222 3445565554 233333333332222 78899999888776432
Q ss_pred ecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 541 NGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 541 ~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
+|..||..+|..-++.
T Consensus 343 ------------~I~~W~~~~g~~~~~~ 358 (603)
T KOG0318|consen 343 ------------HINSWDSGSGTSDRLA 358 (603)
T ss_pred ------------eEEEEecCCccccccc
Confidence 5889999888777665
|
|
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-10 Score=124.89 Aligned_cols=193 Identities=13% Similarity=0.157 Sum_probs=120.4
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh------hhHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND------RFVEQLVACA 743 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~------~~~~~~~~D~ 743 (953)
.|.||++||.+... + .|. .....| +.+|.|++ .|..|+|.+..+. .......+|+
T Consensus 127 ~~~ivllHG~~~~~-------------~-~w~-~~~~~L-~~~~~Via---~DlpG~G~S~~p~~~~~~~ys~~~~a~~l 187 (383)
T PLN03084 127 NPPVLLIHGFPSQA-------------Y-SYR-KVLPVL-SKNYHAIA---FDWLGFGFSDKPQPGYGFNYTLDEYVSSL 187 (383)
T ss_pred CCeEEEECCCCCCH-------------H-HHH-HHHHHH-hcCCEEEE---ECCCCCCCCCCCcccccccCCHHHHHHHH
Confidence 47899999964211 0 111 122334 56899999 5556788775432 1345556666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC--CCcC------------ccc----
Q 002209 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL--TPFG------------FQN---- 805 (953)
Q Consensus 744 ~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~--~~~~------------~~~---- 805 (953)
.+.++.+ ..+++.|+|||+||.+++.++.++|++++++|++++...... .+.. +..
T Consensus 188 ~~~i~~l------~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~ 261 (383)
T PLN03084 188 ESLIDEL------KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLR 261 (383)
T ss_pred HHHHHHh------CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHH
Confidence 6666554 235799999999999999999999999999999987642110 0000 000
Q ss_pred ----------------cc----chhh--------hhHHHHHhcC-cc-------c---ccCCCCCcEEEEEeCCCCCCCC
Q 002209 806 ----------------ED----RTLW--------EATSTYVEMS-PF-------M---SANKLKKPILLVHGEEDNNSGT 846 (953)
Q Consensus 806 ----------------~~----~~~~--------~~~~~~~~~s-p~-------~---~~~~i~~P~Li~~G~~D~~v~~ 846 (953)
+. ..++ .....+..+. .+ . ...+++.|+|+++|+.|..++
T Consensus 262 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~- 340 (383)
T PLN03084 262 ASDKALTSCGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLN- 340 (383)
T ss_pred HHhhhhcccCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcC-
Confidence 00 0000 0000001110 00 0 013578999999999999988
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
....+++.+.. +.+++++|+++|... .+..+.+.+.|.+||.
T Consensus 341 -~~~~~~~a~~~-----~a~l~vIp~aGH~~~-~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 341 -YDGVEDFCKSS-----QHKLIELPMAGHHVQ-EDCGEELGGIISGILS 382 (383)
T ss_pred -HHHHHHHHHhc-----CCeEEEECCCCCCcc-hhCHHHHHHHHHHHhh
Confidence 77666665542 358899999999764 5777888888888875
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-10 Score=132.11 Aligned_cols=147 Identities=19% Similarity=0.249 Sum_probs=91.5
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEEC------CC--Cce--------e-ecccCCCccccccccceEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV------DT--GKA--------R-PLFQSPDIYLNAIFDNFVW 251 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~------~~--g~~--------~-~lt~~~~~~~~~~~~~~~w 251 (953)
..+..++|||||++||+.++ +....||-++. -+ |.. . .+..++. .+..+.|
T Consensus 70 ~sv~CVR~S~dG~~lAsGSD-------D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-----DV~Dv~W 137 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSD-------DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS-----DVLDVNW 137 (942)
T ss_pred CceeEEEECCCCCeEeeccC-------cceEEEeeecccCCcccccccccccccceeeEEEEEecCCC-----ccceecc
Confidence 36888999999999999542 22333454441 10 111 1 1112222 2678999
Q ss_pred ecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeC
Q 002209 252 VNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIG 329 (953)
Q Consensus 252 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~ 329 (953)
+||+.+|+... -...+.+++. +.+. +.+.
T Consensus 138 sp~~~~lvS~s-------------------------------------------------~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 138 SPDDSLLVSVS-------------------------------------------------LDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred CCCccEEEEec-------------------------------------------------ccceEEEEccccceeeeeee
Confidence 99999998651 1134556666 5543 3333
Q ss_pred CC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeec
Q 002209 330 PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (953)
Q Consensus 330 ~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ws 407 (953)
.. ..+-.+.|.|=||++|..+.++ .|.+|++.. +-.+.++. +..+ . ......+.+.||
T Consensus 169 ~H~s~VKGvs~DP~Gky~ASqsdDr-------------tikvwrt~dw~i~k~It~-pf~~-~-----~~~T~f~RlSWS 228 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIGKYFASQSDDR-------------TLKVWRTSDWGIEKSITK-PFEE-S-----PLTTFFLRLSWS 228 (942)
T ss_pred cccccccceEECCccCeeeeecCCc-------------eEEEEEcccceeeEeecc-chhh-C-----CCcceeeecccC
Confidence 33 7788899999999999998665 899998764 34444443 2211 1 112334679999
Q ss_pred cCCCCceEE
Q 002209 408 SDKPSTLYW 416 (953)
Q Consensus 408 pDg~~i~~~ 416 (953)
|||+.|+-.
T Consensus 229 PDG~~las~ 237 (942)
T KOG0973|consen 229 PDGHHLASP 237 (942)
T ss_pred CCcCeecch
Confidence 999987754
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.7e-10 Score=109.28 Aligned_cols=270 Identities=15% Similarity=0.139 Sum_probs=177.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCcccccc-------ccceec--eEEecCCCCCCcceeeeeceEEEEccCC---CCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELAR-------PEEKLA--GLRIDGKCNTRSRMSFYTGIGIHQLFPD---GKLG 177 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~i~i~~~~~~---g~~~ 177 (953)
-+....||+|+++|+..+.++...+++.-. |.-..+ .-.++|.++-....+.++.--|++++.. |...
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce
Confidence 466778888888888888774433332221 111112 2446777766665666666778888632 2223
Q ss_pred ceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEec-CCe
Q 002209 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN-NST 256 (953)
Q Consensus 178 ~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp-Dg~ 256 (953)
..+.|.+++ ...+.-.|-+|+ +|+. +.|....-+||+++|+..+.+...... +-++..+| |++
T Consensus 137 v~r~l~gHt--gylScC~f~dD~-~ilT---------~SGD~TCalWDie~g~~~~~f~GH~gD----V~slsl~p~~~n 200 (343)
T KOG0286|consen 137 VSRELAGHT--GYLSCCRFLDDN-HILT---------GSGDMTCALWDIETGQQTQVFHGHTGD----VMSLSLSPSDGN 200 (343)
T ss_pred eeeeecCcc--ceeEEEEEcCCC-ceEe---------cCCCceEEEEEcccceEEEEecCCccc----EEEEecCCCCCC
Confidence 345565544 467777887655 6766 335677778888998877766544433 66888888 888
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCC-Cc
Q 002209 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AV 333 (953)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~ 333 (953)
.++.... | . .-.++|+ .|. .+.+... ..
T Consensus 201 tFvSg~c----------------------------------------D-------~--~aklWD~R~~~c~qtF~ghesD 231 (343)
T KOG0286|consen 201 TFVSGGC----------------------------------------D-------K--SAKLWDVRSGQCVQTFEGHESD 231 (343)
T ss_pred eEEeccc----------------------------------------c-------c--ceeeeeccCcceeEeecccccc
Confidence 7774411 1 1 2234566 554 4444444 88
Q ss_pred ccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002209 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (953)
Q Consensus 334 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i 413 (953)
+..+.|-|+|..++..+.+. ...++|+.....-.+...+. ...++.+++||..|+.
T Consensus 232 INsv~ffP~G~afatGSDD~-------------tcRlyDlRaD~~~a~ys~~~----------~~~gitSv~FS~SGRl- 287 (343)
T KOG0286|consen 232 INSVRFFPSGDAFATGSDDA-------------TCRLYDLRADQELAVYSHDS----------IICGITSVAFSKSGRL- 287 (343)
T ss_pred cceEEEccCCCeeeecCCCc-------------eeEEEeecCCcEEeeeccCc----------ccCCceeEEEcccccE-
Confidence 89999999998887776443 78889997544433333221 2256688999999984
Q ss_pred eEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEE
Q 002209 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (953)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~ 484 (953)
+|.- .....+.+||. ..+...-.|..++.++..+..||||..+...+|+... +||
T Consensus 288 Lfag------------y~d~~c~vWDt--lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~l--riW 342 (343)
T KOG0286|consen 288 LFAG------------YDDFTCNVWDT--LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTL--RIW 342 (343)
T ss_pred EEee------------ecCCceeEeec--cccceEEEeeccCCeeEEEEECCCCcEEEecchhHhe--eec
Confidence 4430 12346788985 6666667788999999999999999999999888643 666
|
|
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.4e-11 Score=131.42 Aligned_cols=175 Identities=13% Similarity=0.052 Sum_probs=110.7
Q ss_pred HHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHHHHHhCCCcccE
Q 002209 708 WLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSK-IAVGGHSYGAFMTANLLAHAPHLFCC 786 (953)
Q Consensus 708 la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~-i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (953)
|...+|.|+++|.+ |+|.+...........+|+.+.++.+ +-++ +.++||||||++++.++.++|+++++
T Consensus 95 L~~~~~~Vi~~Dl~---G~g~s~~~~~~~~~~a~dl~~ll~~l------~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~ 165 (343)
T PRK08775 95 LDPARFRLLAFDFI---GADGSLDVPIDTADQADAIALLLDAL------GIARLHAFVGYSYGALVGLQFASRHPARVRT 165 (343)
T ss_pred cCccccEEEEEeCC---CCCCCCCCCCCHHHHHHHHHHHHHHc------CCCcceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 43568999996654 66655322222345566666655554 2234 57999999999999999999999999
Q ss_pred EEEcccCCCCCCCC--c--------------C----------------ccc--------ccchh------hhhHH-----
Q 002209 787 GIARSGAYNRTLTP--F--------------G----------------FQN--------EDRTL------WEATS----- 815 (953)
Q Consensus 787 ~v~~~~~~d~~~~~--~--------------~----------------~~~--------~~~~~------~~~~~----- 815 (953)
+|++++........ + . +.. ..... .....
T Consensus 166 LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (343)
T PRK08775 166 LVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAEDYLDA 245 (343)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHHHHHH
Confidence 99998643210000 0 0 000 00000 00000
Q ss_pred ----HHHhcCc-------------ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC-CCccC
Q 002209 816 ----TYVEMSP-------------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF-ESHGY 877 (953)
Q Consensus 816 ----~~~~~sp-------------~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~ 877 (953)
.....++ ...+.++++|+|+++|++|..+| +..+.++.+.+.. ..+++++++ +||..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p--~~~~~~~~~~i~p---~a~l~~i~~~aGH~~ 320 (343)
T PRK08775 246 AGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVP--LADLVELAEGLGP---RGSLRVLRSPYGHDA 320 (343)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeC--HHHHHHHHHHcCC---CCeEEEEeCCccHHH
Confidence 0000000 11246789999999999999998 8888888776632 258889985 89986
Q ss_pred CCcccHHHHHHHHHHHHHHh
Q 002209 878 AARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 878 ~~~~~~~~~~~~i~~fl~~~ 897 (953)
. .+..+.+.+.+.+||.+.
T Consensus 321 ~-lE~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 321 F-LKETDRIDAILTTALRST 339 (343)
T ss_pred H-hcCHHHHHHHHHHHHHhc
Confidence 4 567888889999998753
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.8e-09 Score=113.42 Aligned_cols=263 Identities=14% Similarity=0.113 Sum_probs=137.1
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECC-CCceeecccCCCccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-TGKARPLFQSPDIYL 242 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~-~g~~~~lt~~~~~~~ 242 (953)
.|.+|++.++|.. +.+..++.+.......+||||++|+.... . ...|..++++ .|+...+...+...
T Consensus 13 ~I~~~~~~~~g~l---~~~~~~~~~~~~~~l~~spd~~~lyv~~~------~--~~~i~~~~~~~~g~l~~~~~~~~~~- 80 (330)
T PRK11028 13 QIHVWNLNHEGAL---TLLQVVDVPGQVQPMVISPDKRHLYVGVR------P--EFRVLSYRIADDGALTFAAESPLPG- 80 (330)
T ss_pred CEEEEEECCCCce---eeeeEEecCCCCccEEECCCCCEEEEEEC------C--CCcEEEEEECCCCceEEeeeecCCC-
Confidence 6789998543432 22222333345677899999998866432 1 3455445544 44433222111110
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
....++++|||+.|+.+.. ..+.|..+++
T Consensus 81 --~p~~i~~~~~g~~l~v~~~------------------------------------------------~~~~v~v~~~~ 110 (330)
T PRK11028 81 --SPTHISTDHQGRFLFSASY------------------------------------------------NANCVSVSPLD 110 (330)
T ss_pred --CceEEEECCCCCEEEEEEc------------------------------------------------CCCeEEEEEEC
Confidence 1347889999999987610 1234555555
Q ss_pred -CCcee-Ee--CCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ceEEEeccCCCcccCCcccc
Q 002209 322 -DGTVK-EI--GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFN 395 (953)
Q Consensus 322 -~g~~~-~l--~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~p~~~~ 395 (953)
+|... .+ ... ......+++|||++|++.... ...|.+||++. +.......... ..+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~------------~~~v~v~d~~~~g~l~~~~~~~~--~~~---- 172 (330)
T PRK11028 111 KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK------------EDRIRLFTLSDDGHLVAQEPAEV--TTV---- 172 (330)
T ss_pred CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC------------CCEEEEEEECCCCcccccCCCce--ecC----
Confidence 34221 11 111 334567899999998776632 24799999974 32221100000 000
Q ss_pred ccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee---ccc------ccCCeeeccC
Q 002209 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK---LDL------RYGGISWCDD 466 (953)
Q Consensus 396 ~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~---~~~------~~~~~~~SpD 466 (953)
...+++.++|+|||+.++.. +. ..+.|.++++++ .+++.+.+.. ... ....+.++||
T Consensus 173 -~g~~p~~~~~~pdg~~lyv~-~~-----------~~~~v~v~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 173 -EGAGPRHMVFHPNQQYAYCV-NE-----------LNSSVDVWQLKD-PHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred -CCCCCceEEECCCCCEEEEE-ec-----------CCCEEEEEEEeC-CCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 01345789999999865544 21 245777777611 1233322211 111 1123779999
Q ss_pred CceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
|++|+.+ ++......+|.++.+++ ..+.+-...... .+ ..+.++|||++|+...
T Consensus 239 g~~lyv~-~~~~~~I~v~~i~~~~~--~~~~~~~~~~~~---~p--~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 239 GRHLYAC-DRTASLISVFSVSEDGS--VLSFEGHQPTET---QP--RGFNIDHSGKYLIAAG 292 (330)
T ss_pred CCEEEEe-cCCCCeEEEEEEeCCCC--eEEEeEEEeccc---cC--CceEECCCCCEEEEEE
Confidence 9988776 33333234555554442 212221111110 01 1178999999998765
|
|
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=110.24 Aligned_cols=210 Identities=15% Similarity=0.097 Sum_probs=136.2
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
....+.++...+..+-+.+..- + ..-++|++||.- + . ....+....+..+++.||.++.
T Consensus 9 ~~~~ivi~n~~ne~lvg~lh~t-----g---s~e~vvlcHGfr--S-------~----Kn~~~~~~vA~~~e~~gis~fR 67 (269)
T KOG4667|consen 9 IAQKIVIPNSRNEKLVGLLHET-----G---STEIVVLCHGFR--S-------H----KNAIIMKNVAKALEKEGISAFR 67 (269)
T ss_pred eeeEEEeccCCCchhhcceecc-----C---CceEEEEeeccc--c-------c----cchHHHHHHHHHHHhcCceEEE
Confidence 3456677777777766644432 1 256899999931 0 0 1111122445567789999999
Q ss_pred cCCCCCCCCCChhhhhhh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 718 GPTTPIIGEGDEEANDRF--VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~--~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
+|+.|.|++.+.-.+ +..+.+|+..+++++..... .--.|+|||-||.+++..+.++++ ++-+|..+|-++
T Consensus 68 ---fDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~nr---~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRyd 140 (269)
T KOG4667|consen 68 ---FDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNSNR---VVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYD 140 (269)
T ss_pred ---EEecCCCCcCCccccCcccchHHHHHHHHHHhccCce---EEEEEEeecCccHHHHHHHHhhcC-chheEEcccccc
Confidence 788898888664322 35667999999999866321 123699999999999999999966 778888888766
Q ss_pred CCC------CC--------cCccc------ccchhhhhHHHHHhc----CcccccCCCCCcEEEEEeCCCCCCCCchHHH
Q 002209 796 RTL------TP--------FGFQN------EDRTLWEATSTYVEM----SPFMSANKLKKPILLVHGEEDNNSGTLTMQS 851 (953)
Q Consensus 796 ~~~------~~--------~~~~~------~~~~~~~~~~~~~~~----sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~ 851 (953)
..- .+ -+|.+ .....|......... ++.-.-=..++|+|-+||..|.+|| .+++
T Consensus 141 l~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVP--ve~A 218 (269)
T KOG4667|consen 141 LKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVP--VEDA 218 (269)
T ss_pred hhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceee--chhH
Confidence 321 00 11111 011122211111111 1111111246899999999999999 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcc
Q 002209 852 DRFFNALKGHGALCRLVILPFESHGYAARE 881 (953)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (953)
.++.+.++. .++.++||++|.++..+
T Consensus 219 kefAk~i~n----H~L~iIEgADHnyt~~q 244 (269)
T KOG4667|consen 219 KEFAKIIPN----HKLEIIEGADHNYTGHQ 244 (269)
T ss_pred HHHHHhccC----CceEEecCCCcCccchh
Confidence 999888876 48899999999997544
|
|
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.5e-12 Score=128.99 Aligned_cols=158 Identities=20% Similarity=0.272 Sum_probs=103.2
Q ss_pred HHHHHHHcCcEEEEcCCCCCCCCCChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002209 704 SVLLWLARGFAILGGPTTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (953)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (953)
....| ++||.|+++ +.+|+|.+.... ......+.|+.++++.+. .+++.++|||+||.+++.++.+
T Consensus 17 ~~~~l-~~~~~v~~~---d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~lvG~S~Gg~~a~~~a~~ 86 (228)
T PF12697_consen 17 LAEAL-ARGYRVIAF---DLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALG------IKKVILVGHSMGGMIALRLAAR 86 (228)
T ss_dssp HHHHH-HTTSEEEEE---ECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTT------TSSEEEEEETHHHHHHHHHHHH
T ss_pred HHHHH-hCCCEEEEE---ecCCccccccccccCCcchhhhhhhhhhcccccc------cccccccccccccccccccccc
Confidence 44455 589999994 456777775432 224555666666554432 2689999999999999999999
Q ss_pred CCCcccEEEEcccCCCCCCCC--c----Cccc-------ccc----hh---h------h----h-HHH--------HHhc
Q 002209 780 APHLFCCGIARSGAYNRTLTP--F----GFQN-------EDR----TL---W------E----A-TST--------YVEM 820 (953)
Q Consensus 780 ~p~~~~a~v~~~~~~d~~~~~--~----~~~~-------~~~----~~---~------~----~-~~~--------~~~~ 820 (953)
+|++++++|++++........ . .... ... .. + . . ... +...
T Consensus 87 ~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
T PF12697_consen 87 YPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIRSSRRALAEYLRSNLWQA 166 (228)
T ss_dssp SGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeecccccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999876421100 0 0000 000 00 0 0 0 000 0112
Q ss_pred CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002209 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (953)
Q Consensus 821 sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (953)
.....+.++++|+++++|++|..++ .....++.+.+. .++++++|++||..
T Consensus 167 ~~~~~~~~~~~pvl~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~ 217 (228)
T PF12697_consen 167 DLSEALPRIKVPVLVIHGEDDPIVP--PESAEELADKLP----NAELVVIPGAGHFL 217 (228)
T ss_dssp HHHHHHHGSSSEEEEEEETTSSSSH--HHHHHHHHHHST----TEEEEEETTSSSTH
T ss_pred cccccccccCCCeEEeecCCCCCCC--HHHHHHHHHHCC----CCEEEEECCCCCcc
Confidence 2334567789999999999999987 666666665543 47999999999986
|
... |
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.7e-10 Score=110.80 Aligned_cols=283 Identities=14% Similarity=0.150 Sum_probs=155.8
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeee-cCCC
Q 002209 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQ-GFPD 187 (953)
Q Consensus 109 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~-~~~~ 187 (953)
.++..+.||.|||+||..+.+ ..|.||++.+ =.....+.+. +++-
T Consensus 87 ~~vt~~~FsSdGK~lat~~~D---------------------------------r~Ir~w~~~D-F~~~eHr~~R~nve~ 132 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGD---------------------------------RSIRLWDVRD-FENKEHRCIRQNVEY 132 (420)
T ss_pred CceeeeEEcCCCceeEEEeCC---------------------------------ceEEEEecch-hhhhhhhHhhccccC
Confidence 368899999999999999876 2578998842 2222222222 1221
Q ss_pred CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC----CceeecccCCCc----cccccccceEEecCCeEEE
Q 002209 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT----GKARPLFQSPDI----YLNAIFDNFVWVNNSTLLV 259 (953)
Q Consensus 188 ~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~----g~~~~lt~~~~~----~~~~~~~~~~wspDg~~l~ 259 (953)
+ ....++|+||-+.+++...+ ...|+++-+.. +-.-..+..... .....+.++.....++.|.
T Consensus 133 d-hpT~V~FapDc~s~vv~~~~--------g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~im 203 (420)
T KOG2096|consen 133 D-HPTRVVFAPDCKSVVVSVKR--------GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIM 203 (420)
T ss_pred C-CceEEEECCCcceEEEEEcc--------CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEE
Confidence 2 56778999999999987642 34555554322 111111111100 0011122333444455555
Q ss_pred EEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCC-ceeEeCCC-Cccccc
Q 002209 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEIGPP-AVYTSL 337 (953)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g-~~~~l~~~-~~~~~~ 337 (953)
..+ ....|.++++.| -...+..+ ......
T Consensus 204 sas-------------------------------------------------~dt~i~lw~lkGq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 204 SAS-------------------------------------------------LDTKICLWDLKGQLLQSIDTNQSSNYDA 234 (420)
T ss_pred Eec-------------------------------------------------CCCcEEEEecCCceeeeeccccccccce
Confidence 331 224566777744 34444444 455678
Q ss_pred ccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc---CceEEEeccCCCcccCCccccccccCccceeeccCCCCce
Q 002209 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD---GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (953)
Q Consensus 338 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~---g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~ 414 (953)
+.||||++|+... |+.++.+|.+- .+..+.+.. .+...+...++..++||+|+++++
T Consensus 235 avSP~GRFia~~g-------------FTpDVkVwE~~f~kdG~fqev~r-------vf~LkGH~saV~~~aFsn~S~r~v 294 (420)
T KOG2096|consen 235 AVSPDGRFIAVSG-------------FTPDVKVWEPIFTKDGTFQEVKR-------VFSLKGHQSAVLAAAFSNSSTRAV 294 (420)
T ss_pred eeCCCCcEEEEec-------------CCCCceEEEEEeccCcchhhhhh-------hheeccchhheeeeeeCCCcceeE
Confidence 9999999999886 45588888763 222222211 011123445667889999999877
Q ss_pred EEEEeccCCCcccccccCCeEEEEecC--CCCCCCceEEe-------ecccccCCeeeccCCceEEEEEecccCceEEEE
Q 002209 415 YWAETQDGGDAKVEVTPRDIIYTQQAE--PVQGEGPEILH-------KLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (953)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~g~~~~~l~-------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 485 (953)
-. +..+.+.+||.+ =..+..+..|- ......-.++.||.|+.|+.+.. +.|-+
T Consensus 295 tv-------------SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-----s~l~~ 356 (420)
T KOG2096|consen 295 TV-------------SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-----SDLKV 356 (420)
T ss_pred EE-------------ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-----CceEE
Confidence 66 334445555531 00122233221 11122235789999999887642 24666
Q ss_pred EcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 486 ISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 486 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
+....+... ..+.+.....+.+ ++|++||++++...
T Consensus 357 ~~se~g~~~-~~~e~~h~~~Is~------is~~~~g~~~atcG 392 (420)
T KOG2096|consen 357 FASEDGKDY-PELEDIHSTTISS------ISYSSDGKYIATCG 392 (420)
T ss_pred EEcccCccc-hhHHHhhcCceee------EEecCCCcEEeeec
Confidence 665554211 1122222333333 89999999998765
|
|
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-10 Score=126.63 Aligned_cols=67 Identities=19% Similarity=0.077 Sum_probs=52.8
Q ss_pred ccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEE-eCCCCccCCCcccHHHHHHHHHHHH
Q 002209 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI-LPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 825 ~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
.+.+|++|+|+++|++|..+| +..++++.+.+......++++. ++++||... .+..+.+.+.+.+||
T Consensus 283 ~l~~I~~P~Lvi~G~~D~~~p--~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~-le~p~~~~~~l~~FL 350 (351)
T TIGR01392 283 ALSRIKAPFLVVSITSDWLFP--PAESRELAKALPAAGLRVTYVEIESPYGHDAF-LVETDQVEELIRGFL 350 (351)
T ss_pred HHhhCCCCEEEEEeCCccccC--HHHHHHHHHHHhhcCCceEEEEeCCCCCcchh-hcCHHHHHHHHHHHh
Confidence 456789999999999999998 9999999999887644444444 468999764 566778888888886
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.2e-10 Score=125.68 Aligned_cols=70 Identities=16% Similarity=0.025 Sum_probs=59.0
Q ss_pred ccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC-CCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP-FESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 825 ~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
.+.+|++|+|+++|++|..+| ++.++++.+.+...+..+++++++ ++||... .+..+.+.+.+.+||.+.
T Consensus 304 ~l~~I~~PtLvI~G~~D~~~p--~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~-le~p~~~~~~L~~FL~~~ 374 (379)
T PRK00175 304 ALARIKARFLVVSFTSDWLFP--PARSREIVDALLAAGADVSYAEIDSPYGHDAF-LLDDPRYGRLVRAFLERA 374 (379)
T ss_pred HHhcCCCCEEEEEECCccccC--HHHHHHHHHHHHhcCCCeEEEEeCCCCCchhH-hcCHHHHHHHHHHHHHhh
Confidence 346789999999999999988 999999999998877777888775 8999864 566778889999999874
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-10 Score=127.48 Aligned_cols=273 Identities=18% Similarity=0.178 Sum_probs=179.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCC-----------ccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCc
Q 002209 110 PLPALSFSPQRDKILFLKRRALPP-----------LEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ 178 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~ 178 (953)
.+....|||||+.++....+.... +..+.........+.+.+++......+.+..|+|||++.++ ..
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--~~ 238 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--RN 238 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC--eE
Confidence 455678999999999886653222 22233333445667788888766666677889999995433 23
Q ss_pred eeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEE
Q 002209 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (953)
Q Consensus 179 ~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l 258 (953)
.+.+.+++ ..+....|+|+|+.|+..+ .+..+.+||+.+|+..+........ +..+.+++||..|
T Consensus 239 ~~~l~gH~--~~v~~~~f~p~g~~i~Sgs---------~D~tvriWd~~~~~~~~~l~~hs~~----is~~~f~~d~~~l 303 (456)
T KOG0266|consen 239 LKTLKGHS--TYVTSVAFSPDGNLLVSGS---------DDGTVRIWDVRTGECVRKLKGHSDG----ISGLAFSPDGNLL 303 (456)
T ss_pred EEEecCCC--CceEEEEecCCCCEEEEec---------CCCcEEEEeccCCeEEEeeeccCCc----eEEEEECCCCCEE
Confidence 44555444 4789999999997766643 4667888888888876655444433 7789999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce---eEeCCC--C
Q 002209 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV---KEIGPP--A 332 (953)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~---~~l~~~--~ 332 (953)
+... ..+.|.++|+ +|.. +.+... .
T Consensus 304 ~s~s-------------------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~ 334 (456)
T KOG0266|consen 304 VSAS-------------------------------------------------YDGTIRVWDLETGSKLCLKLLSGAENS 334 (456)
T ss_pred EEcC-------------------------------------------------CCccEEEEECCCCceeeeecccCCCCC
Confidence 8651 1245677888 7762 233333 2
Q ss_pred -cccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 333 -VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 333 -~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
.++.+.|||+|++|+....++ .+.+|++... ..+....+.... .....+..+++|
T Consensus 335 ~~~~~~~fsp~~~~ll~~~~d~-------------~~~~w~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 335 APVTSVQFSPNGKYLLSASLDR-------------TLKLWDLRSGKSVGTYTGHSNLV----------RCIFSPTLSTGG 391 (456)
T ss_pred CceeEEEECCCCcEEEEecCCC-------------eEEEEEccCCcceeeecccCCcc----------eeEecccccCCC
Confidence 468899999999999887543 8999999843 444444332210 011233447777
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec-ccccCCeeeccCCceEEEEEecccCceEEEEE
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~ 486 (953)
+.|+-. .....+++|+. .++.....+..+ ...+..+.|+|....++..........++|..
T Consensus 392 ~~i~sg-------------~~d~~v~~~~~--~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 392 KLIYSG-------------SEDGSVYVWDS--SSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred CeEEEE-------------eCCceEEEEeC--CccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 766555 44667899986 334444455555 56667789999999988877544443455544
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-09 Score=124.67 Aligned_cols=248 Identities=16% Similarity=0.180 Sum_probs=154.2
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc--eeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
.+....+||||+.++.... ...+.++.+.+++ ..+.... .+..+..++|+|||+.|+...
T Consensus 161 sv~~~~fs~~g~~l~~~~~---------~~~i~~~~~~~~~~~~~~~l~~----h~~~v~~~~fs~d~~~l~s~s----- 222 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASS---------DGLIRIWKLEGIKSNLLRELSG----HTRGVSDVAFSPDGSYLLSGS----- 222 (456)
T ss_pred ceEEEEEcCCCCeEEEccC---------CCcEEEeecccccchhhccccc----cccceeeeEECCCCcEEEEec-----
Confidence 5666899999999888542 3455555555554 2211111 223378999999999887551
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CC-ceeEeCCC-CcccccccCCCC
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DG-TVKEIGPP-AVYTSLDPSPDE 343 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g-~~~~l~~~-~~~~~~~~SpDG 343 (953)
....|.++|+ .+ ..+.+... ..+...+|+|+|
T Consensus 223 --------------------------------------------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g 258 (456)
T KOG0266|consen 223 --------------------------------------------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG 258 (456)
T ss_pred --------------------------------------------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC
Confidence 2245666666 33 34555444 788999999999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
+.|+..+.+. .|.+||+.+++. +.+..+. .++..++|++||..|+-.
T Consensus 259 ~~i~Sgs~D~-------------tvriWd~~~~~~~~~l~~hs-------------~~is~~~f~~d~~~l~s~------ 306 (456)
T KOG0266|consen 259 NLLVSGSDDG-------------TVRIWDVRTGECVRKLKGHS-------------DGISGLAFSPDGNLLVSA------ 306 (456)
T ss_pred CEEEEecCCC-------------cEEEEeccCCeEEEeeeccC-------------CceEEEEECCCCCEEEEc------
Confidence 7777776443 999999996544 4454432 455779999999976655
Q ss_pred CCcccccccCCeEEEEecCCCCCCCc---eEEeecccc--cCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEE
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDLR--YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~---~~l~~~~~~--~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 497 (953)
+.++.+.+||+ .++.. ..+...... +..+.|+|+|++|+....+.. .++|.+.... ....
T Consensus 307 -------s~d~~i~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~--~~~w~l~~~~---~~~~ 371 (456)
T KOG0266|consen 307 -------SYDGTIRVWDL---ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT--LKLWDLRSGK---SVGT 371 (456)
T ss_pred -------CCCccEEEEEC---CCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe--EEEEEccCCc---ceee
Confidence 44668999996 44442 233333333 677899999999988765542 2566554222 1222
Q ss_pred eecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccC
Q 002209 498 LFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (953)
Q Consensus 498 ~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~ 571 (953)
....... .+.. .. ...+++|++++....+. .+++||+.++...+.....
T Consensus 372 ~~~~~~~-~~~~-~~--~~~~~~~~~i~sg~~d~---------------------~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 372 YTGHSNL-VRCI-FS--PTLSTGGKLIYSGSEDG---------------------SVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred ecccCCc-ceeE-ec--ccccCCCCeEEEEeCCc---------------------eEEEEeCCccchhhhhcCC
Confidence 2211111 1100 01 33578888888777433 3999999876655444433
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.7e-10 Score=116.29 Aligned_cols=254 Identities=15% Similarity=0.173 Sum_probs=156.9
Q ss_pred eceEEEEccCCCCCCceeeeecCC-CCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFP-DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~-~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (953)
+.+.|+.+ ||.... .|+.+- ....+....|+|+|+..+|++. -..-+|.+|+.+.+..++-......
T Consensus 235 ~~lrifqv--DGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~--------rrky~ysyDle~ak~~k~~~~~g~e 302 (514)
T KOG2055|consen 235 GTLRIFQV--DGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSG--------RRKYLYSYDLETAKVTKLKPPYGVE 302 (514)
T ss_pred CcEEEEEe--cCccCh--hheeeeeccCccceeeecCCCceEEEecc--------cceEEEEeeccccccccccCCCCcc
Confidence 46678777 564332 232221 1236788899999995555443 2567899999998877765433221
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 321 (953)
...+..+..|+|++.|++.. ..+.|+++..
T Consensus 303 -~~~~e~FeVShd~~fia~~G-------------------------------------------------~~G~I~lLha 332 (514)
T KOG2055|consen 303 -EKSMERFEVSHDSNFIAIAG-------------------------------------------------NNGHIHLLHA 332 (514)
T ss_pred -cchhheeEecCCCCeEEEcc-------------------------------------------------cCceEEeehh
Confidence 12367899999999988761 3356777776
Q ss_pred -CCce-eEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccc
Q 002209 322 -DGTV-KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVR 398 (953)
Q Consensus 322 -~g~~-~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~ 398 (953)
+++. ..+-.++.+..+.||.||+.|+.+... ++||+||+... -.+.......
T Consensus 333 kT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~-------------GeV~v~nl~~~~~~~rf~D~G~------------ 387 (514)
T KOG2055|consen 333 KTKELITSFKIEGVVSDFTFSSDSKELLASGGT-------------GEVYVWNLRQNSCLHRFVDDGS------------ 387 (514)
T ss_pred hhhhhhheeeeccEEeeEEEecCCcEEEEEcCC-------------ceEEEEecCCcceEEEEeecCc------------
Confidence 6642 222223788899999999999887633 39999999844 2333333211
Q ss_pred cCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecC-CCCCCCceEEe---ecccccCCeeeccCCceEEEEE
Q 002209 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAE-PVQGEGPEILH---KLDLRYGGISWCDDSLALVYES 474 (953)
Q Consensus 399 ~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~g~~~~~l~---~~~~~~~~~~~SpDg~~l~~~~ 474 (953)
....+++-|++|+.+|.. +..+.|-+|+.. ...++.++.+. +....+.++.|++|+..|+..+
T Consensus 388 v~gts~~~S~ng~ylA~G-------------S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 388 VHGTSLCISLNGSYLATG-------------SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred cceeeeeecCCCceEEec-------------cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhh
Confidence 122468889999855554 445566666631 12345555543 3344577899999999998887
Q ss_pred ecccCceEEEEEcCCCCCCCcEEeecCC-----CccccCCCCCCCeEeccCCCEEEEEe
Q 002209 475 WYKTRRTRTWVISPGSKDVAPRILFDRS-----SEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 475 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.......+|..+. +. .++..-+ ...+.. +.|||.|.++++..
T Consensus 455 ~~~knalrLVHvP--S~----TVFsNfP~~n~~vg~vtc------~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 455 RVKKNALRLVHVP--SC----TVFSNFPTSNTKVGHVTC------MAFSPNSGYLAVGN 501 (514)
T ss_pred hccccceEEEecc--ce----eeeccCCCCCCcccceEE------EEecCCCceEEeec
Confidence 6554433444443 21 1221111 111112 78999999999886
|
|
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-11 Score=129.34 Aligned_cols=219 Identities=25% Similarity=0.363 Sum_probs=122.3
Q ss_pred CcEEEEEEEcCCCCCCCCCCCccEEEEeCCC-CCcCcCCCCcccCCCCCCCCcc-chHHHHHHHcC----cEEEEcCCCC
Q 002209 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPG-EFKSKDAAGQVRGSPNEFPRIG-STSVLLWLARG----FAILGGPTTP 722 (953)
Q Consensus 649 g~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~G----~~V~~~~~~~ 722 (953)
|..+..++|+|++|.+.+ ++|+|+++||. .+ +.... ......++..| .+++.++..+
T Consensus 5 g~~~~~~VylP~~y~~~~--~~PvlylldG~~~~---------------~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~ 67 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSK--PYPVLYLLDGQSGW---------------FRNGNAQEALDRLIAEGKIPPMIIVVIPNGD 67 (251)
T ss_dssp TEEEEEEEEECTTGGTTT--TEEEEEEESHTTHH---------------HHHHHHHHHHHHHHHHHTSEEEEEEEEESSS
T ss_pred CCeEEEEEEECCCCCCCC--CCEEEEEccCCccc---------------cccchHHHHHHHHHHhCCCCceEEEEEeccc
Confidence 667899999999984444 69999999993 10 00000 11122234443 4444433322
Q ss_pred CC-CCCC-------------hhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEE
Q 002209 723 II-GEGD-------------EEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (953)
Q Consensus 723 ~~-G~G~-------------~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (953)
.. .++. ......+.....+ +.+.++.++..+++++.+|+|+||||+.|+.++.++|+.|.+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~ 144 (251)
T PF00756_consen 68 NSRFYTSWYLPAGSSRRADDSGGGDAYETFLTE---ELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVI 144 (251)
T ss_dssp TSSTTSBTTSSBCTTCBCTSTTTHHHHHHHHHT---HHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEE
T ss_pred ccccccccccccccccccccCCCCcccceehhc---cchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCcccccccc
Confidence 21 1000 0011222222233 45566777777776679999999999999999999999999999
Q ss_pred EcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCC--------CchHHHHHHHHHHHh
Q 002209 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG--------TLTMQSDRFFNALKG 860 (953)
Q Consensus 789 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~--------~~~~~~~~~~~~l~~ 860 (953)
+++|.++.....|+. .....|.....+.... ......-..++++..|+.|.... .......++.+.|+.
T Consensus 145 ~~S~~~~~~~~~w~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 221 (251)
T PF00756_consen 145 AFSGALDPSPSLWGP--SDDEAWKENDPFDLIK-ALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQLLKA 221 (251)
T ss_dssp EESEESETTHCHHHH--STCGHHGGCHHHHHHH-HHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccCccccccccccCc--CCcHHhhhccHHHHhh-hhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHHHHHH
Confidence 999986643211111 1111111111111100 00112234678999999998421 001233444445556
Q ss_pred CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 861 HGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 861 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
.+.+..+..++| +|.+. .+...+...+.||
T Consensus 222 ~g~~~~~~~~~G-~H~~~---~W~~~l~~~L~~~ 251 (251)
T PF00756_consen 222 KGIPHTYHVFPG-GHDWA---YWRRRLPDALPWM 251 (251)
T ss_dssp EECTTESEEEHS-ESSHH---HHHHHHHHHHHHH
T ss_pred cCCCceEEEecC-ccchh---hHHHHHHHHHhhC
Confidence 677888888995 78652 2444455555554
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-09 Score=115.93 Aligned_cols=290 Identities=16% Similarity=0.201 Sum_probs=153.9
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
.|+++++..+. +.-..+.............++||++.|+.+... ....+....|.++.++|+...+...+...
T Consensus 14 gI~~~~~d~~~--g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~---~~~~g~v~~~~i~~~~g~L~~~~~~~~~g-- 86 (345)
T PF10282_consen 14 GIYVFRFDEET--GTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEG---SGDSGGVSSYRIDPDTGTLTLLNSVPSGG-- 86 (345)
T ss_dssp EEEEEEEETTT--TEEEEEEEEEESSSECCEEE-TTSSEEEEEETT---SSTTTEEEEEEEETTTTEEEEEEEEEESS--
T ss_pred cEEEEEEcCCC--CCceEeeeecCCCCCceEEEEeCCCEEEEEEcc---ccCCCCEEEEEECCCcceeEEeeeeccCC--
Confidence 67888873222 333333322233467888999999877765421 01344556677776667766554332110
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-- 321 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-- 321 (953)
...-.++.+|||+.|+++- |..+.+.++++
T Consensus 87 ~~p~~i~~~~~g~~l~van------------------------------------------------y~~g~v~v~~l~~ 118 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVAN------------------------------------------------YGGGSVSVFPLDD 118 (345)
T ss_dssp SCEEEEEECTTSSEEEEEE------------------------------------------------TTTTEEEEEEECT
T ss_pred CCcEEEEEecCCCEEEEEE------------------------------------------------ccCCeEEEEEccC
Confidence 0023567789999999771 23455666666
Q ss_pred CCceeEeC--------------CC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce--EEEeccC
Q 002209 322 DGTVKEIG--------------PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDL 384 (953)
Q Consensus 322 ~g~~~~l~--------------~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~--~~~l~~~ 384 (953)
+|...... .. .....+.++|||+++++.... ...|++++++... .......
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------------~D~v~~~~~~~~~~~l~~~~~~ 186 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------------ADRVYVYDIDDDTGKLTPVDSI 186 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------------TTEEEEEEE-TTS-TEEEEEEE
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------------CCEEEEEEEeCCCceEEEeecc
Confidence 46433321 01 233467899999999776522 2378888887433 3321111
Q ss_pred CCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe---ec--cc---
Q 002209 385 PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---KL--DL--- 456 (953)
Q Consensus 385 ~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~---~~--~~--- 456 (953)
.. ....|+|.+.|+|||+.+ |.+.+. .+.|.++++++ ..+..+.+. .. ..
T Consensus 187 ~~---------~~G~GPRh~~f~pdg~~~-Yv~~e~-----------s~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 187 KV---------PPGSGPRHLAFSPDGKYA-YVVNEL-----------SNTVSVFDYDP-SDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp EC---------STTSSEEEEEE-TTSSEE-EEEETT-----------TTEEEEEEEET-TTTEEEEEEEEESCETTSCSS
T ss_pred cc---------ccCCCCcEEEEcCCcCEE-EEecCC-----------CCcEEEEeecc-cCCceeEEEEeeecccccccc
Confidence 10 112577899999999864 443322 34566666511 233333321 11 11
Q ss_pred -ccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCC-CeEeccCCCEEEEEeeeccCC
Q 002209 457 -RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSP-MMRRTSTGTYVIAKIKKENDE 534 (953)
Q Consensus 457 -~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~SpDG~~l~~~~~~~~~~ 534 (953)
....+.+||||++|+.+. +......+|.++..++ ....+....... ..| .+.++|||++|+......
T Consensus 245 ~~~~~i~ispdg~~lyvsn-r~~~sI~vf~~d~~~g--~l~~~~~~~~~G-----~~Pr~~~~s~~g~~l~Va~~~s--- 313 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSN-RGSNSISVFDLDPATG--TLTLVQTVPTGG-----KFPRHFAFSPDGRYLYVANQDS--- 313 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEE-CTTTEEEEEEECTTTT--TEEEEEEEEESS-----SSEEEEEE-TTSSEEEEEETTT---
T ss_pred CCceeEEEecCCCEEEEEe-ccCCEEEEEEEecCCC--ceEEEEEEeCCC-----CCccEEEEeCCCCEEEEEecCC---
Confidence 223478999999887764 4434334555554543 333332211110 001 178899999998775321
Q ss_pred CcEEEEecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 535 GTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
+.-.++.+|.++|+++.+-
T Consensus 314 ---------------~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 314 ---------------NTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp ---------------TEEEEEEEETTTTEEEEEE
T ss_pred ---------------CeEEEEEEeCCCCcEEEec
Confidence 2334566677788776654
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.2e-10 Score=115.41 Aligned_cols=194 Identities=16% Similarity=0.199 Sum_probs=127.9
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc--eeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
.+-+..||++|++||..+ .+...-||.+..++.- ...+..+... +..+.||||.+.|+...
T Consensus 226 EVWfl~FS~nGkyLAsaS-------kD~Taiiw~v~~d~~~kl~~tlvgh~~~-----V~yi~wSPDdryLlaCg----- 288 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASAS-------KDSTAIIWIVVYDVHFKLKKTLVGHSQP-----VSYIMWSPDDRYLLACG----- 288 (519)
T ss_pred cEEEEEEcCCCeeEeecc-------CCceEEEEEEecCcceeeeeeeecccCc-----eEEEEECCCCCeEEecC-----
Confidence 688899999999999865 3446678888766541 1223232222 67889999999888551
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC---CcccccccCCCC
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP---AVYTSLDPSPDE 343 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~---~~~~~~~~SpDG 343 (953)
....+++.|+ +|..+..... ..+++.+|-|||
T Consensus 289 --------------------------------------------~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg 324 (519)
T KOG0293|consen 289 --------------------------------------------FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG 324 (519)
T ss_pred --------------------------------------------chHheeeccCCcchhhhhcccCcCCCcceeEEccCC
Confidence 1123677788 8876665543 456789999999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
.+++..+.++ .+..||++|.......... . ..+..++.++||+.++..
T Consensus 325 ~~~V~Gs~dr-------------~i~~wdlDgn~~~~W~gvr----~--------~~v~dlait~Dgk~vl~v------- 372 (519)
T KOG0293|consen 325 FRFVTGSPDR-------------TIIMWDLDGNILGNWEGVR----D--------PKVHDLAITYDGKYVLLV------- 372 (519)
T ss_pred ceeEecCCCC-------------cEEEecCCcchhhcccccc----c--------ceeEEEEEcCCCcEEEEE-------
Confidence 9988877443 8999999986533221110 0 123568899999987776
Q ss_pred CcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
.....+.+++. ....-+-+...+..+.++..|.||+.++..-... ..+||-+.
T Consensus 373 ------~~d~~i~l~~~---e~~~dr~lise~~~its~~iS~d~k~~LvnL~~q--ei~LWDl~ 425 (519)
T KOG0293|consen 373 ------TVDKKIRLYNR---EARVDRGLISEEQPITSFSISKDGKLALVNLQDQ--EIHLWDLE 425 (519)
T ss_pred ------ecccceeeech---hhhhhhccccccCceeEEEEcCCCcEEEEEcccC--eeEEeecc
Confidence 33446677764 2222232445566678899999999876654333 23566554
|
|
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.9e-10 Score=118.34 Aligned_cols=188 Identities=15% Similarity=0.094 Sum_probs=110.5
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh-hhHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVE 748 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~~~~ 748 (953)
.|.||++||.+... ..|. .....| ++|.|++ .+.+|+|.+.... ..+....+|+.+.++
T Consensus 2 ~p~vvllHG~~~~~--------------~~w~-~~~~~l--~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~l~~~l~ 61 (242)
T PRK11126 2 LPWLVFLHGLLGSG--------------QDWQ-PVGEAL--PDYPRLY---IDLPGHGGSAAISVDGFADVSRLLSQTLQ 61 (242)
T ss_pred CCEEEEECCCCCCh--------------HHHH-HHHHHc--CCCCEEE---ecCCCCCCCCCccccCHHHHHHHHHHHHH
Confidence 36799999964211 1111 223333 4799999 4556777764432 133444555555544
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-cccEEEEcccCCCCCCC-----------CcC--ccccc-------
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLT-----------PFG--FQNED------- 807 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~d~~~~-----------~~~--~~~~~------- 807 (953)
.+ +.+++.++||||||.+++.++.++|+ +++++++.++....... .+. +....
T Consensus 62 ~~------~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (242)
T PRK11126 62 SY------NILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLAD 135 (242)
T ss_pred Hc------CCCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHH
Confidence 32 24689999999999999999999865 49999887654321000 000 00000
Q ss_pred ---ch-----hhhhHHHH----------------Hhc------CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHH
Q 002209 808 ---RT-----LWEATSTY----------------VEM------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (953)
Q Consensus 808 ---~~-----~~~~~~~~----------------~~~------sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~ 857 (953)
.. .......+ ... +....+.++++|+|+++|++|..+. . +.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~---~----~~~~ 208 (242)
T PRK11126 136 WYQQPVFASLNAEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ---A----LAQQ 208 (242)
T ss_pred HHhcchhhccCccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH---H----HHHH
Confidence 00 00000000 000 1112456789999999999997531 1 2121
Q ss_pred HHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 858 LKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 858 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
. ..++++++++||.+. .++.+.+.+.+.+||.+
T Consensus 209 ~-----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 209 L-----ALPLHVIPNAGHNAH-RENPAAFAASLAQILRL 241 (242)
T ss_pred h-----cCeEEEeCCCCCchh-hhChHHHHHHHHHHHhh
Confidence 1 368999999999774 57778888888888864
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.7e-09 Score=101.28 Aligned_cols=257 Identities=12% Similarity=0.142 Sum_probs=160.4
Q ss_pred eeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEE
Q 002209 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (953)
Q Consensus 179 ~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l 258 (953)
.+.|.++. ..+....|++|+++|+-.+. +..|.+||.-+....+....+... +-.++++|.|+.+
T Consensus 48 rr~LkGH~--~Ki~~~~ws~Dsr~ivSaSq---------DGklIvWDs~TtnK~haipl~s~W----VMtCA~sPSg~~V 112 (343)
T KOG0286|consen 48 RRTLKGHL--NKIYAMDWSTDSRRIVSASQ---------DGKLIVWDSFTTNKVHAIPLPSSW----VMTCAYSPSGNFV 112 (343)
T ss_pred EEEecccc--cceeeeEecCCcCeEEeecc---------CCeEEEEEcccccceeEEecCcee----EEEEEECCCCCeE
Confidence 34554433 47999999999999998764 568888898765544444445443 6789999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc---CC---ceeEeCCC-
Q 002209 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DG---TVKEIGPP- 331 (953)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~---~g---~~~~l~~~- 331 (953)
+...-+ ..-.||.+.. +| ..+.+...
T Consensus 113 AcGGLd-----------------------------------------------N~Csiy~ls~~d~~g~~~v~r~l~gHt 145 (343)
T KOG0286|consen 113 ACGGLD-----------------------------------------------NKCSIYPLSTRDAEGNVRVSRELAGHT 145 (343)
T ss_pred EecCcC-----------------------------------------------ceeEEEecccccccccceeeeeecCcc
Confidence 976100 1112333322 22 22334444
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEE-eccCCCcccCCccccccccCccceeecc-C
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRS-D 409 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~-l~~~~~~~~~p~~~~~~~~~~~~~~wsp-D 409 (953)
++.+...|-+|+. |+..+.+ ...-+||++.++... ...+. .-+-++.++| |
T Consensus 146 gylScC~f~dD~~-ilT~SGD-------------~TCalWDie~g~~~~~f~GH~-------------gDV~slsl~p~~ 198 (343)
T KOG0286|consen 146 GYLSCCRFLDDNH-ILTGSGD-------------MTCALWDIETGQQTQVFHGHT-------------GDVMSLSLSPSD 198 (343)
T ss_pred ceeEEEEEcCCCc-eEecCCC-------------ceEEEEEcccceEEEEecCCc-------------ccEEEEecCCCC
Confidence 6677778887775 5555533 378899999665443 33332 3345788899 7
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCC
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
++..+-. +-....++||. ..+.-.+.+..++.+++.+.|-|+|..++..+.+.+ -++|-+..+
T Consensus 199 ~ntFvSg-------------~cD~~aklWD~--R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t--cRlyDlRaD 261 (343)
T KOG0286|consen 199 GNTFVSG-------------GCDKSAKLWDV--RSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT--CRLYDLRAD 261 (343)
T ss_pred CCeEEec-------------ccccceeeeec--cCcceeEeecccccccceEEEccCCCeeeecCCCce--eEEEeecCC
Confidence 7754332 22345678886 344445567888999999999999998888766554 378777655
Q ss_pred CCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEec
Q 002209 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~ 569 (953)
. ...++..... .. +--.+.||..|+.|+....+ ....+||.-.++..-+..
T Consensus 262 ~----~~a~ys~~~~-~~---gitSv~FS~SGRlLfagy~d---------------------~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 262 Q----ELAVYSHDSI-IC---GITSVAFSKSGRLLFAGYDD---------------------FTCNVWDTLKGERVGVLA 312 (343)
T ss_pred c----EEeeeccCcc-cC---CceeEEEcccccEEEeeecC---------------------CceeEeeccccceEEEee
Confidence 4 2333332211 11 11127899999888776532 238899976665554433
Q ss_pred c
Q 002209 570 S 570 (953)
Q Consensus 570 ~ 570 (953)
+
T Consensus 313 G 313 (343)
T KOG0286|consen 313 G 313 (343)
T ss_pred c
Confidence 3
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-10 Score=125.81 Aligned_cols=207 Identities=14% Similarity=0.152 Sum_probs=138.7
Q ss_pred CCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCC
Q 002209 176 LGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS 255 (953)
Q Consensus 176 ~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg 255 (953)
.+..+.+.++. +.+...+||||.+.|+-++ ++....||-++ +-....+..++ +.++..+.|+|-|
T Consensus 441 ~~~~~~L~GH~--GPVyg~sFsPd~rfLlScS-------ED~svRLWsl~--t~s~~V~y~GH----~~PVwdV~F~P~G 505 (707)
T KOG0263|consen 441 SGTSRTLYGHS--GPVYGCSFSPDRRFLLSCS-------EDSSVRLWSLD--TWSCLVIYKGH----LAPVWDVQFAPRG 505 (707)
T ss_pred CceeEEeecCC--Cceeeeeecccccceeecc-------CCcceeeeecc--cceeEEEecCC----CcceeeEEecCCc
Confidence 34556676543 5789999999999999865 33345555544 54444333333 3336788899998
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-Ccc
Q 002209 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVY 334 (953)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~ 334 (953)
-+++.. ..| .+..||..|-+...+.+... ..+
T Consensus 506 yYFata----------------------------------------s~D-------~tArLWs~d~~~PlRifaghlsDV 538 (707)
T KOG0263|consen 506 YYFATA----------------------------------------SHD-------QTARLWSTDHNKPLRIFAGHLSDV 538 (707)
T ss_pred eEEEec----------------------------------------CCC-------ceeeeeecccCCchhhhccccccc
Confidence 766644 112 34456665544444444444 777
Q ss_pred cccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002209 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (953)
Q Consensus 335 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i 413 (953)
..+.|.|++.+++-.+.+. .+.+||+..+.. |..+.+. ..+..++|||+|+.|
T Consensus 539 ~cv~FHPNs~Y~aTGSsD~-------------tVRlWDv~~G~~VRiF~GH~-------------~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 539 DCVSFHPNSNYVATGSSDR-------------TVRLWDVSTGNSVRIFTGHK-------------GPVTALAFSPCGRYL 592 (707)
T ss_pred ceEEECCcccccccCCCCc-------------eEEEEEcCCCcEEEEecCCC-------------CceEEEEEcCCCceE
Confidence 7899999999998777554 899999985554 4443332 334679999999988
Q ss_pred eEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
+-. +..+.|.+||+ ..|.....+..+.+.+.++.||.||..|+..+.+.+. +||-+.
T Consensus 593 aSg-------------~ed~~I~iWDl--~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV--~lWD~~ 649 (707)
T KOG0263|consen 593 ASG-------------DEDGLIKIWDL--ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSV--RLWDLT 649 (707)
T ss_pred eec-------------ccCCcEEEEEc--CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeE--EEEEch
Confidence 766 55678999997 3334444556667788899999999999887655533 677443
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3e-09 Score=116.44 Aligned_cols=250 Identities=16% Similarity=0.195 Sum_probs=157.5
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce-eecccCCCcc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLFQSPDIY 241 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~ 241 (953)
..+|+|+..+ +....|..+. ...+..+.|+++|++|+... ....+.++|....+. +.+.......
T Consensus 197 ~~vylW~~~s----~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~---------~~g~v~iwD~~~~k~~~~~~~~h~~r 262 (484)
T KOG0305|consen 197 QSVYLWSASS----GSVTELCSFG-EELVTSVKWSPDGSHLAVGT---------SDGTVQIWDVKEQKKTRTLRGSHASR 262 (484)
T ss_pred ceEEEEecCC----CceEEeEecC-CCceEEEEECCCCCEEEEee---------cCCeEEEEehhhccccccccCCcCce
Confidence 4789999754 4555665442 35799999999999999944 466888888765433 3332212222
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 321 (953)
+..++|. +..+... . +...|...|+
T Consensus 263 ----vg~laW~--~~~lssG----------------------------------------s---------r~~~I~~~dv 287 (484)
T KOG0305|consen 263 ----VGSLAWN--SSVLSSG----------------------------------------S---------RDGKILNHDV 287 (484)
T ss_pred ----eEEEecc--CceEEEe----------------------------------------c---------CCCcEEEEEE
Confidence 7788997 3333322 0 2234445555
Q ss_pred -CC--ceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccc
Q 002209 322 -DG--TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNS 396 (953)
Q Consensus 322 -~g--~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~ 396 (953)
.. ....+... ..+-...|++||+++|-..+++ .+.+||....++ ..++.+
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN-------------~~~Iwd~~~~~p~~~~~~H------------ 342 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDN-------------VVFIWDGLSPEPKFTFTEH------------ 342 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCCcc-------------ceEeccCCCccccEEEecc------------
Confidence 32 11112223 6677899999999999777554 899999854332 233333
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEec
Q 002209 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 397 ~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
...+..++|+|=.+.|+.. |++ .....|..|+. .+++...-......+.++.||+..+.|+.+...
T Consensus 343 -~aAVKA~awcP~q~~lLAs-----GGG-----s~D~~i~fwn~---~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 343 -TAAVKALAWCPWQSGLLAT-----GGG-----SADRCIKFWNT---NTGARIDSVDTGSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred -ceeeeEeeeCCCccCceEE-----cCC-----CcccEEEEEEc---CCCcEecccccCCceeeEEEcCCCCEEEEecCC
Confidence 2456789999988887766 221 33557888985 444444444555668889999999999988755
Q ss_pred ccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 477 KTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 477 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
......||.+..-. ....+. .+..-+.. +++||||+.|+....+
T Consensus 409 s~n~i~lw~~ps~~---~~~~l~-gH~~RVl~------la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 409 SENQITLWKYPSMK---LVAELL-GHTSRVLY------LALSPDGETIVTGAAD 452 (484)
T ss_pred CCCcEEEEeccccc---eeeeec-CCcceeEE------EEECCCCCEEEEeccc
Confidence 54456788876422 122222 22222222 7899999999887743
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-08 Score=100.27 Aligned_cols=278 Identities=9% Similarity=0.050 Sum_probs=165.3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC-----CceeecccCCCccccccccceEEecCCeEEEEEecC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-----GKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~-----g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 264 (953)
.+...+..+++..+++.+.++ ..+.++++.+ |.+.+...+... .+..+..++||+..+..
T Consensus 17 ~Vt~la~~~~~~~~l~sasrD--------k~ii~W~L~~dd~~~G~~~r~~~GHsH----~v~dv~~s~dg~~alS~--- 81 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRD--------KTIIVWKLTSDDIKYGVPVRRLTGHSH----FVSDVVLSSDGNFALSA--- 81 (315)
T ss_pred eEEEEEeecCCCceEEEcccc--------eEEEEEEeccCccccCceeeeeeccce----EecceEEccCCceEEec---
Confidence 566677777777777765432 2344444332 444333332222 27789999999887744
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCC-CcccccccCC
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-AVYTSLDPSP 341 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~-~~~~~~~~Sp 341 (953)
. -...+.+.|+ +|+.++ +..+ ..+.+++|||
T Consensus 82 -------------------------------------s---------wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~ 115 (315)
T KOG0279|consen 82 -------------------------------------S---------WDGTLRLWDLATGESTRRFVGHTKDVLSVAFST 115 (315)
T ss_pred -------------------------------------c---------ccceEEEEEecCCcEEEEEEecCCceEEEEecC
Confidence 1 2245667788 775544 4444 7889999999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
|.+.|+..+.++ .|-+|++-|.....+..... +..+.-+.|+|+....++..
T Consensus 116 dn~qivSGSrDk-------------Tiklwnt~g~ck~t~~~~~~-----------~~WVscvrfsP~~~~p~Ivs---- 167 (315)
T KOG0279|consen 116 DNRQIVSGSRDK-------------TIKLWNTLGVCKYTIHEDSH-----------REWVSCVRFSPNESNPIIVS---- 167 (315)
T ss_pred CCceeecCCCcc-------------eeeeeeecccEEEEEecCCC-----------cCcEEEEEEcCCCCCcEEEE----
Confidence 999999887554 89999998877666665321 23445689999864333331
Q ss_pred CCCcccccccCCeEEEEecCCCCCCCce-EEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeec
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD 500 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g~~~~-~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 500 (953)
.+.+..+-+||+ .+-+.+ .+..+.+.++.+++||||...++...+ + .++.+|++.+ +.+..
T Consensus 168 -------~s~DktvKvWnl---~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkd--g--~~~LwdL~~~----k~lys 229 (315)
T KOG0279|consen 168 -------ASWDKTVKVWNL---RNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKD--G--EAMLWDLNEG----KNLYS 229 (315)
T ss_pred -------ccCCceEEEEcc---CCcchhhccccccccEEEEEECCCCCEEecCCCC--c--eEEEEEccCC----ceeEe
Confidence 134557889986 433332 234566677889999999988875332 2 5666666654 12322
Q ss_pred C-CCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeee
Q 002209 501 R-SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (953)
Q Consensus 501 ~-~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~ 579 (953)
. ....+.+ +.|||.--+|..... +.+.+||++++....-...+...+ +.
T Consensus 230 l~a~~~v~s------l~fspnrywL~~at~----------------------~sIkIwdl~~~~~v~~l~~d~~g~--s~ 279 (315)
T KOG0279|consen 230 LEAFDIVNS------LCFSPNRYWLCAATA----------------------TSIKIWDLESKAVVEELKLDGIGP--SS 279 (315)
T ss_pred ccCCCeEee------EEecCCceeEeeccC----------------------CceEEEeccchhhhhhcccccccc--cc
Confidence 2 2222222 778988766655441 138899998876543333332100 00
Q ss_pred EeeccCCccccccccCCEEEEEEec
Q 002209 580 VALMSDQTEGDLYLNQLKILTSKES 604 (953)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~~ 604 (953)
..-...--..+||.||.+|+.-..+
T Consensus 280 ~~~~~~clslaws~dG~tLf~g~td 304 (315)
T KOG0279|consen 280 KAGDPICLSLAWSADGQTLFAGYTD 304 (315)
T ss_pred ccCCcEEEEEEEcCCCcEEEeeecC
Confidence 0000000125788999888755544
|
|
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-09 Score=116.69 Aligned_cols=195 Identities=10% Similarity=0.100 Sum_probs=113.0
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~ 746 (953)
.|.||++||.... ...| ......|.++||.|++ .+..|+|.+.... ........++.+.
T Consensus 18 ~p~vvliHG~~~~-----------~~~w----~~~~~~L~~~g~~vi~---~dl~g~G~s~~~~~~~~~~~~~~~~l~~~ 79 (273)
T PLN02211 18 PPHFVLIHGISGG-----------SWCW----YKIRCLMENSGYKVTC---IDLKSAGIDQSDADSVTTFDEYNKPLIDF 79 (273)
T ss_pred CCeEEEECCCCCC-----------cCcH----HHHHHHHHhCCCEEEE---ecccCCCCCCCCcccCCCHHHHHHHHHHH
Confidence 5889999995211 0111 1234456778999999 4556777653221 2334444444444
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC-CCC-------C--------------cCcc
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR-TLT-------P--------------FGFQ 804 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~-~~~-------~--------------~~~~ 804 (953)
++ +.. ..+++.|+||||||.++..++.++|++++++|.+++.... ... . +...
T Consensus 80 i~---~l~--~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (273)
T PLN02211 80 LS---SLP--ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLG 154 (273)
T ss_pred HH---hcC--CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccC
Confidence 43 332 1368999999999999999999999999999998663210 000 0 0000
Q ss_pred c----ccchh---------hh-hH----HHHHh------cCcc------cccCCC-CCcEEEEEeCCCCCCCCchHHHHH
Q 002209 805 N----EDRTL---------WE-AT----STYVE------MSPF------MSANKL-KKPILLVHGEEDNNSGTLTMQSDR 853 (953)
Q Consensus 805 ~----~~~~~---------~~-~~----~~~~~------~sp~------~~~~~i-~~P~Li~~G~~D~~v~~~~~~~~~ 853 (953)
. ..... +. .+ ..+.. ...+ ....++ ++|+++|.|++|..+| ++..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip--~~~~~~ 232 (273)
T PLN02211 155 PDQPPTSAIIKKEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVK--PEQQEA 232 (273)
T ss_pred CCCCCceeeeCHHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCC--HHHHHH
Confidence 0 00000 00 00 00000 0111 112344 6799999999999998 888888
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
+.+.+.. .+++.++ +||... .+....+...|.+...
T Consensus 233 m~~~~~~----~~~~~l~-~gH~p~-ls~P~~~~~~i~~~a~ 268 (273)
T PLN02211 233 MIKRWPP----SQVYELE-SDHSPF-FSTPFLLFGLLIKAAA 268 (273)
T ss_pred HHHhCCc----cEEEEEC-CCCCcc-ccCHHHHHHHHHHHHH
Confidence 7776543 2677787 699753 4556666555555433
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.5e-09 Score=102.11 Aligned_cols=271 Identities=12% Similarity=0.075 Sum_probs=171.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
++....|+|||..+|....+ ..|.+|++-.|- .....++++. +
T Consensus 49 eI~~~~F~P~gs~~aSgG~D---------------------------------r~I~LWnv~gdc--eN~~~lkgHs--g 91 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSD---------------------------------RAIVLWNVYGDC--ENFWVLKGHS--G 91 (338)
T ss_pred eEEEEEECCCCCeEeecCCc---------------------------------ceEEEEeccccc--cceeeecccc--c
Confidence 46678899999999887765 378999984332 3344444432 4
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..+.|.+||.+|+-+.. ...|+.+|+++|+..+-....... +..+.-+.-|..++.+.
T Consensus 92 AVM~l~~~~d~s~i~S~gt---------Dk~v~~wD~~tG~~~rk~k~h~~~----vNs~~p~rrg~~lv~Sg------- 151 (338)
T KOG0265|consen 92 AVMELHGMRDGSHILSCGT---------DKTVRGWDAETGKRIRKHKGHTSF----VNSLDPSRRGPQLVCSG------- 151 (338)
T ss_pred eeEeeeeccCCCEEEEecC---------CceEEEEecccceeeehhccccce----eeecCccccCCeEEEec-------
Confidence 7899999999999988653 678999999999876544433332 44444444455555541
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCCCcccccccCCCCcEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEKYIL 347 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~~~~~~~~~SpDG~~l~ 347 (953)
+ ...++-++|+ .. ..+.+.+....+++.|.-++..+.
T Consensus 152 --------------------------------s---------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 152 --------------------------------S---------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVI 190 (338)
T ss_pred --------------------------------C---------CCceEEEEeecccchhhccccceeEEEEEeccccccee
Confidence 1 1235556676 44 344444447788899999998887
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
....+ ++|.+||+..++...+... ...-+..+..||+|..+.--
T Consensus 191 sggId-------------n~ikvWd~r~~d~~~~lsG------------h~DtIt~lsls~~gs~llsn----------- 234 (338)
T KOG0265|consen 191 SGGID-------------NDIKVWDLRKNDGLYTLSG------------HADTITGLSLSRYGSFLLSN----------- 234 (338)
T ss_pred ecccc-------------CceeeeccccCcceEEeec------------ccCceeeEEeccCCCccccc-----------
Confidence 66544 3899999975554443331 22334678899999865432
Q ss_pred ccccCCeEEEEecCCCCCCCc-eEE-eeccc----ccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecC
Q 002209 428 EVTPRDIIYTQQAEPVQGEGP-EIL-HKLDL----RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~-~~l-~~~~~----~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 501 (953)
+-...+.+||..|...++. ..+ ..... ..-..+|||+++.+.+.+.+. .+|++|..+. ........
T Consensus 235 --sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr----~vyvwd~~~r--~~lyklpG 306 (338)
T KOG0265|consen 235 --SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR----FVYVWDTTSR--RILYKLPG 306 (338)
T ss_pred --cccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccc----eEEEeecccc--cEEEEcCC
Confidence 3355788888766665554 223 22222 223479999999988876443 5788886652 22223333
Q ss_pred CCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 502 SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 502 ~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
....+.. +.|.|....|....
T Consensus 307 h~gsvn~------~~Fhp~e~iils~~ 327 (338)
T KOG0265|consen 307 HYGSVNE------VDFHPTEPIILSCS 327 (338)
T ss_pred cceeEEE------eeecCCCcEEEEec
Confidence 3333333 67888887776655
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.8e-09 Score=100.31 Aligned_cols=272 Identities=8% Similarity=0.053 Sum_probs=159.3
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCC
Q 002209 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (953)
Q Consensus 108 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~ 187 (953)
...+..+.|.-||.+||..+.+ ..+.+|++..+ ...+.+..-..
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~d---------------------------------ktv~v~n~e~~---r~~~~~~~~gh 63 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFD---------------------------------KTVSVWNLERD---RFRKELVYRGH 63 (313)
T ss_pred hhcceEEEEcccCceeeecccC---------------------------------CceEEEEecch---hhhhhhcccCC
Confidence 3457789999999999988775 24467777321 11122221122
Q ss_pred CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 188 ~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
+..+....|+|-..-++++.. +...|.++|...+++...+....+ -....|+|||+.+++..
T Consensus 64 ~~svdql~w~~~~~d~~atas--------~dk~ir~wd~r~~k~~~~i~~~~e-----ni~i~wsp~g~~~~~~~----- 125 (313)
T KOG1407|consen 64 TDSVDQLCWDPKHPDLFATAS--------GDKTIRIWDIRSGKCTARIETKGE-----NINITWSPDGEYIAVGN----- 125 (313)
T ss_pred CcchhhheeCCCCCcceEEec--------CCceEEEEEeccCcEEEEeeccCc-----ceEEEEcCCCCEEEEec-----
Confidence 236788899986655655543 456788888888887655543332 22678999999999771
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcE
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~ 345 (953)
....|..+|. +.++..-.+. ..+....|+-++.
T Consensus 126 --------------------------------------------kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd- 160 (313)
T KOG1407|consen 126 --------------------------------------------KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND- 160 (313)
T ss_pred --------------------------------------------CcccEEEEEecccceeehhcccceeeeeeecCCCC-
Confidence 1123445555 3332222222 4456778885554
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
+.|..+.. +.|.+..-. ..+++.... .+..+..-+.|+|||++++..
T Consensus 161 ~Fflt~Gl------------G~v~ILsyp--sLkpv~si~----------AH~snCicI~f~p~GryfA~G--------- 207 (313)
T KOG1407|consen 161 LFFLTNGL------------GCVEILSYP--SLKPVQSIK----------AHPSNCICIEFDPDGRYFATG--------- 207 (313)
T ss_pred EEEEecCC------------ceEEEEecc--ccccccccc----------cCCcceEEEEECCCCceEeec---------
Confidence 55554221 133333222 122222211 111233458999999987765
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEee-cCCCc
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF-DRSSE 504 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~ 504 (953)
+....+-+||+ .+---.+.++..++.+..++||.||+.|+.++++. -|=+.+..+|+ +...+. +.+
T Consensus 208 ----sADAlvSLWD~--~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh----~IDIA~vetGd-~~~eI~~~~~-- 274 (313)
T KOG1407|consen 208 ----SADALVSLWDV--DELICERCISRLDWPVRTLSFSHDGRMLASASEDH----FIDIAEVETGD-RVWEIPCEGP-- 274 (313)
T ss_pred ----cccceeeccCh--hHhhhheeeccccCceEEEEeccCcceeeccCccc----eEEeEecccCC-eEEEeeccCC--
Confidence 34456678885 11112356788899999999999999999887543 23334444442 112221 111
Q ss_pred cccCCCCCCCeEeccCCCEEEEEeeec
Q 002209 505 DVYSDPGSPMMRRTSTGTYVIAKIKKE 531 (953)
Q Consensus 505 ~~~~~~~~p~~~~SpDG~~l~~~~~~~ 531 (953)
.+. ++|.|.-..|+|...+.
T Consensus 275 -t~t------VAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 275 -TFT------VAWHPKRPLLAYACDDK 294 (313)
T ss_pred -cee------EEecCCCceeeEEecCC
Confidence 122 88999999999998544
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.3e-10 Score=115.96 Aligned_cols=239 Identities=13% Similarity=0.151 Sum_probs=150.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
++....|+|+|+..+|++.+ . .-+|+||+.+ +...+..++-+.+ ..
T Consensus 259 Pi~~a~f~p~G~~~i~~s~r-------------------------r-------ky~ysyDle~-ak~~k~~~~~g~e-~~ 304 (514)
T KOG2055|consen 259 PIQKAEFAPNGHSVIFTSGR-------------------------R-------KYLYSYDLET-AKVTKLKPPYGVE-EK 304 (514)
T ss_pred ccceeeecCCCceEEEeccc-------------------------c-------eEEEEeeccc-cccccccCCCCcc-cc
Confidence 46677899999966666553 1 1368999954 2222222222222 12
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.......||||+.||+... ...|+++...+++.. +... .++.+..+.|+.||+.|+.+
T Consensus 305 ~~e~FeVShd~~fia~~G~---------~G~I~lLhakT~eli--~s~K---ieG~v~~~~fsSdsk~l~~~-------- 362 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGN---------NGHIHLLHAKTKELI--TSFK---IEGVVSDFTFSSDSKELLAS-------- 362 (514)
T ss_pred hhheeEecCCCCeEEEccc---------CceEEeehhhhhhhh--heee---eccEEeeEEEecCCcEEEEE--------
Confidence 5677788999999999553 679999998887753 2222 23337899999999988866
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCC--CcccccccCCCCcE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP--AVYTSLDPSPDEKY 345 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~--~~~~~~~~SpDG~~ 345 (953)
.+++++|++|+ ... ..+.... -.-++++.|++|.+
T Consensus 363 -----------------------------------------~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y 401 (514)
T KOG2055|consen 363 -----------------------------------------GGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY 401 (514)
T ss_pred -----------------------------------------cCCceEEEEecCCcceEEEEeecCccceeeeeecCCCce
Confidence 15578999999 443 3333333 33367899999999
Q ss_pred EEEEEecCCccccccCCCCCcceEEEecc----CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTD----GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~----g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
+|..+..+ -|-+||.+ ++.++++.... ....++.+++|+||++.++.....
T Consensus 402 lA~GS~~G-------------iVNIYd~~s~~~s~~PkPik~~d----------NLtt~Itsl~Fn~d~qiLAiaS~~-- 456 (514)
T KOG2055|consen 402 LATGSDSG-------------IVNIYDGNSCFASTNPKPIKTVD----------NLTTAITSLQFNHDAQILAIASRV-- 456 (514)
T ss_pred EEeccCcc-------------eEEEeccchhhccCCCCchhhhh----------hhheeeeeeeeCcchhhhhhhhhc--
Confidence 99887432 34455543 33444444321 223566789999999987776322
Q ss_pred CCCcccccccCCeEEEEecCCCCCCCceEEe------ecccccCCeeeccCCceEEEEEecccCceEEEEE
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILH------KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~ 486 (953)
..+.+.++.+ |.- .... ..-+.+..++|||.|.++++....+ +..||.+
T Consensus 457 ---------~knalrLVHv-PS~----TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g--rv~l~kL 511 (514)
T KOG2055|consen 457 ---------KKNALRLVHV-PSC----TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG--RVHLFKL 511 (514)
T ss_pred ---------cccceEEEec-cce----eeeccCCCCCCcccceEEEEecCCCceEEeecCCC--ceeeEee
Confidence 2445666665 211 1111 1123456789999999999875433 2467765
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-09 Score=108.21 Aligned_cols=178 Identities=16% Similarity=0.142 Sum_probs=114.6
Q ss_pred EEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh
Q 002209 653 SATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN 732 (953)
Q Consensus 653 ~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~ 732 (953)
...++.|.. .+.||+||+.||.. + ...++......+|+.||+|+.++.+...+.+.
T Consensus 5 ~l~v~~P~~-----~g~yPVv~f~~G~~---------~------~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~~~---- 60 (259)
T PF12740_consen 5 PLLVYYPSS-----AGTYPVVLFLHGFL---------L------INSWYSQLLEHVASHGYIVVAPDLYSIGGPDD---- 60 (259)
T ss_pred CeEEEecCC-----CCCcCEEEEeCCcC---------C------CHHHHHHHHHHHHhCceEEEEecccccCCCCc----
Confidence 345777865 45699999999941 1 11123345667899999999988654433221
Q ss_pred hhhHHHHHHHHHHHHHHHHHc-----C---CCCCCcEEEEEeChHHHHHHHHHHhC-----CCcccEEEEcccCCCCCCC
Q 002209 733 DRFVEQLVACAEAAVEEVVRR-----G---VAHPSKIAVGGHSYGAFMTANLLAHA-----PHLFCCGIARSGAYNRTLT 799 (953)
Q Consensus 733 ~~~~~~~~~D~~~~~~~l~~~-----~---~~d~~~i~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~~~~d~~~~ 799 (953)
...+.++.+.++|+.+. + .+|-++++|+|||-||-++..++..+ +.+|++++.+.|+-.....
T Consensus 61 ----~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~ 136 (259)
T PF12740_consen 61 ----TDEVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKG 136 (259)
T ss_pred ----chhHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccc
Confidence 35567777888887652 1 25888999999999999999999886 4589999999987421111
Q ss_pred CcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCC--------CC-CCchHH-HHHHHHHHHhCCCcEEEEE
Q 002209 800 PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDN--------NS-GTLTMQ-SDRFFNALKGHGALCRLVI 869 (953)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~--------~v-~~~~~~-~~~~~~~l~~~g~~~~~~~ 869 (953)
.... +.. ..+.| ..-+...|+||+-..... .| | ... -.+||++++.. .-..+
T Consensus 137 ~~~~----------P~v-~~~~p--~s~~~~~P~lviGtGLg~~~~~~~~~~CaP--~g~n~~~Ff~~~~~p---~~~~v 198 (259)
T PF12740_consen 137 SQTE----------PPV-LTYTP--QSFDFSMPALVIGTGLGGEPRNPLFPPCAP--AGVNYREFFDECKPP---SWHFV 198 (259)
T ss_pred cCCC----------Ccc-ccCcc--cccCCCCCeEEEecccCcccccccCCCCCC--CCCCHHHHHHhcCCC---EEEEE
Confidence 0000 000 00111 112245899999766663 23 2 222 47888888544 56667
Q ss_pred eCCCCcc
Q 002209 870 LPFESHG 876 (953)
Q Consensus 870 ~~~~~H~ 876 (953)
..+.||.
T Consensus 199 ~~~~GH~ 205 (259)
T PF12740_consen 199 AKDYGHM 205 (259)
T ss_pred eCCCCch
Confidence 7899996
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4e-10 Score=105.40 Aligned_cols=202 Identities=16% Similarity=0.156 Sum_probs=133.5
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
...+.+.|-. .| .-...+|.|.+ ..|++|++|||+|..++... + -..+.....+||+|+
T Consensus 43 ~r~e~l~Yg~-~g-~q~VDIwg~~~-------~~klfIfIHGGYW~~g~rk~-------c-----lsiv~~a~~~gY~va 101 (270)
T KOG4627|consen 43 IRVEHLRYGE-GG-RQLVDIWGSTN-------QAKLFIFIHGGYWQEGDRKM-------C-----LSIVGPAVRRGYRVA 101 (270)
T ss_pred cchhccccCC-CC-ceEEEEecCCC-------CccEEEEEecchhhcCchhc-------c-----cchhhhhhhcCeEEE
Confidence 3455666642 33 23345666644 26899999999877554221 1 123445678999999
Q ss_pred EcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCcccEEEEcccCCC
Q 002209 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYN 795 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~d 795 (953)
...| +... ......+.+.++...++|+.+... ..+.+.+.|||.|+.+++.+.++. ..++.++++.+|+++
T Consensus 102 svgY------~l~~-q~htL~qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~ 173 (270)
T KOG4627|consen 102 SVGY------NLCP-QVHTLEQTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYD 173 (270)
T ss_pred Eecc------CcCc-ccccHHHHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhh
Confidence 8444 2221 123467888999999999987643 356799999999999999988853 358999999999987
Q ss_pred CCC-CCcCcccccchhhhhHHHHHhcCc-ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002209 796 RTL-TPFGFQNEDRTLWEATSTYVEMSP-FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (953)
Q Consensus 796 ~~~-~~~~~~~~~~~~~~~~~~~~~~sp-~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (953)
..- ....+....+. ..+..+..|+ +.....++.|+||+.+.+|.- .+++|.+.+...+++. ++..|++.
T Consensus 174 l~EL~~te~g~dlgL---t~~~ae~~Scdl~~~~~v~~~ilVv~~~~esp--klieQnrdf~~q~~~a----~~~~f~n~ 244 (270)
T KOG4627|consen 174 LRELSNTESGNDLGL---TERNAESVSCDLWEYTDVTVWILVVAAEHESP--KLIEQNRDFADQLRKA----SFTLFKNY 244 (270)
T ss_pred HHHHhCCccccccCc---ccchhhhcCccHHHhcCceeeeeEeeecccCc--HHHHhhhhHHHHhhhc----ceeecCCc
Confidence 321 11111010000 1111122232 233456789999999999976 5599999999998875 78889999
Q ss_pred Ccc
Q 002209 874 SHG 876 (953)
Q Consensus 874 ~H~ 876 (953)
+|.
T Consensus 245 ~hy 247 (270)
T KOG4627|consen 245 DHY 247 (270)
T ss_pred chh
Confidence 995
|
|
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-09 Score=110.45 Aligned_cols=178 Identities=15% Similarity=0.082 Sum_probs=106.1
Q ss_pred HHHHcCcEEEEcCCCCCCCCCChhhhhhh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcc
Q 002209 707 LWLARGFAILGGPTTPIIGEGDEEANDRF--VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (953)
Q Consensus 707 ~la~~G~~V~~~~~~~~~G~G~~~~~~~~--~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 784 (953)
.|++ ...|.+ +|..|+|+|..+.-. ......-.++.++..+..-. -+++.|+|||+||+++..+|.++|++|
T Consensus 112 ~La~-~~~vya---iDllG~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~~--L~KmilvGHSfGGYLaa~YAlKyPerV 185 (365)
T KOG4409|consen 112 DLAK-IRNVYA---IDLLGFGRSSRPKFSIDPTTAEKEFVESIEQWRKKMG--LEKMILVGHSFGGYLAAKYALKYPERV 185 (365)
T ss_pred hhhh-cCceEE---ecccCCCCCCCCCCCCCcccchHHHHHHHHHHHHHcC--CcceeEeeccchHHHHHHHHHhChHhh
Confidence 3444 788888 677888888543210 11111233344443333222 358999999999999999999999999
Q ss_pred cEEEEcccCCCCC---CCC-------cCc-------cccc--------chh-------h----------hhHHHH-H---
Q 002209 785 CCGIARSGAYNRT---LTP-------FGF-------QNED--------RTL-------W----------EATSTY-V--- 818 (953)
Q Consensus 785 ~a~v~~~~~~d~~---~~~-------~~~-------~~~~--------~~~-------~----------~~~~~~-~--- 818 (953)
+-+|+++|.--.. ..+ ..+ .... +.. | ...+.+ .
T Consensus 186 ~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp~Lv~~~~~d~~~k~~~~~~ed~l~~Yi 265 (365)
T KOG4409|consen 186 EKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGPKLVSRLRPDRFRKFPSLIEEDFLHEYI 265 (365)
T ss_pred ceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccchHHHhhhhHHHHHhccccchhHHHHHHH
Confidence 9999998852110 000 000 0000 000 0 000000 0
Q ss_pred -----------------------hcCc-ccccCCCC--CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC
Q 002209 819 -----------------------EMSP-FMSANKLK--KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (953)
Q Consensus 819 -----------------------~~sp-~~~~~~i~--~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 872 (953)
...| ++.+..++ +|+++|+|+.|..- ...+.++...+. ...++.+++|+
T Consensus 266 Y~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dWmD---~~~g~~~~~~~~--~~~~~~~~v~~ 340 (365)
T KOG4409|consen 266 YHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDWMD---KNAGLEVTKSLM--KEYVEIIIVPG 340 (365)
T ss_pred HHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCccccc---chhHHHHHHHhh--cccceEEEecC
Confidence 0011 22333444 89999999999864 456677777663 34579999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHH
Q 002209 873 ESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 873 ~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
+||... ..+.+.+.+.+..+++.
T Consensus 341 aGHhvy-lDnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 341 AGHHVY-LDNPEFFNQIVLEECDK 363 (365)
T ss_pred CCceee-cCCHHHHHHHHHHHHhc
Confidence 999874 45666777777777654
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-08 Score=124.79 Aligned_cols=231 Identities=13% Similarity=0.045 Sum_probs=136.3
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccC---CCCCCceeeeecCCC
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP---DGKLGQEIEIQGFPD 187 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~---~g~~~~~~~l~~~~~ 187 (953)
+..++|||||++||....+ +.|.||++.. ++... ...+..+..
T Consensus 486 V~~i~fs~dg~~latgg~D---------------------------------~~I~iwd~~~~~~~~~~~-~~~~~~~~~ 531 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVN---------------------------------KKIKIFECESIIKDGRDI-HYPVVELAS 531 (793)
T ss_pred EEEEEECCCCCEEEEEeCC---------------------------------CEEEEEECCccccccccc-ccceEEecc
Confidence 5567899999988887764 3678888732 11000 001111222
Q ss_pred CCcccceEeccC-CCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEec-CCeEEEEEecCC
Q 002209 188 GAKLNFVTWSQD-GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN-NSTLLVCTIPLL 265 (953)
Q Consensus 188 ~~~~~~~~wSPD-G~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~ 265 (953)
...+....|+|. ++.|+... ....|.+||+.+++.......... .+..++|+| |+..|+...
T Consensus 532 ~~~v~~l~~~~~~~~~las~~---------~Dg~v~lWd~~~~~~~~~~~~H~~----~V~~l~~~p~~~~~L~Sgs--- 595 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSN---------FEGVVQVWDVARSQLVTEMKEHEK----RVWSIDYSSADPTLLASGS--- 595 (793)
T ss_pred cCceeeEEeccCCCCEEEEEe---------CCCeEEEEECCCCeEEEEecCCCC----CEEEEEEcCCCCCEEEEEc---
Confidence 235778899875 56666533 356788889887765433322222 277899996 777777551
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCCCccccccc-CCC
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPPAVYTSLDP-SPD 342 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~~~~~~~~~-SpD 342 (953)
..+.+.++|+ ++.. ..+.....+..+.| +++
T Consensus 596 ----------------------------------------------~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~ 629 (793)
T PLN00181 596 ----------------------------------------------DDGSVKLWSINQGVSIGTIKTKANICCVQFPSES 629 (793)
T ss_pred ----------------------------------------------CCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCC
Confidence 2245666677 5533 22322245666777 568
Q ss_pred CcEEEEEEecCCccccccCCCCCcceEEEeccCce--EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002209 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 343 G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~--~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
|+.|++.+.+. .|.+||+.... ...+..+ ...+..+.|+ |+..++-.
T Consensus 630 g~~latgs~dg-------------~I~iwD~~~~~~~~~~~~~h-------------~~~V~~v~f~-~~~~lvs~---- 678 (793)
T PLN00181 630 GRSLAFGSADH-------------KVYYYDLRNPKLPLCTMIGH-------------SKTVSYVRFV-DSSTLVSS---- 678 (793)
T ss_pred CCEEEEEeCCC-------------eEEEEECCCCCccceEecCC-------------CCCEEEEEEe-CCCEEEEE----
Confidence 99998887443 89999997432 1222221 1234567886 66654433
Q ss_pred cCCCcccccccCCeEEEEecCCC----CCCCceEEeecccccCCeeeccCCceEEEEEecc
Q 002209 421 DGGDAKVEVTPRDIIYTQQAEPV----QGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~d~~~~----~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
+..+.|.+||+... .......+..+...+..+.|+++|++|+..+.++
T Consensus 679 ---------s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 679 ---------STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred ---------ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 34557888886111 0112233444555566789999999888877554
|
|
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.5e-09 Score=110.71 Aligned_cols=238 Identities=14% Similarity=0.084 Sum_probs=146.3
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCC-CCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDP-SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~-~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
-++.-++..||..+..-++.++.-.. .+.+..|+||++||-...+. ..+-...+....++||.|+.
T Consensus 93 y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~-------------~~YVr~lv~~a~~~G~r~VV 159 (409)
T KOG1838|consen 93 YTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSH-------------ESYVRHLVHEAQRKGYRVVV 159 (409)
T ss_pred ceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCCh-------------hHHHHHHHHHHHhCCcEEEE
Confidence 34455666799888888887654321 12235799999999432211 11112344455679999999
Q ss_pred cCCCCCCCCCChhh--hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--cccEEEEcccC
Q 002209 718 GPTTPIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSGA 793 (953)
Q Consensus 718 ~~~~~~~G~G~~~~--~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~~ 793 (953)
.+.+| .|.+.- +.-+-....+|+.++++++.++.. ..++..+|.||||.+.+.++++..+ .+.|+++++-.
T Consensus 160 fN~RG---~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P--~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~P 234 (409)
T KOG1838|consen 160 FNHRG---LGGSKLTTPRLFTAGWTEDLREVVNHIKKRYP--QAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNP 234 (409)
T ss_pred ECCCC---CCCCccCCCceeecCCHHHHHHHHHHHHHhCC--CCceEEEEecchHHHHHHHhhhccCCCCceeEEEEecc
Confidence 66654 444422 223334557899999999998853 3489999999999999999987543 25555555554
Q ss_pred CCCCC-----CCcCc--------------------------------ccccchh--------------hhhHHHHHhcCc
Q 002209 794 YNRTL-----TPFGF--------------------------------QNEDRTL--------------WEATSTYVEMSP 822 (953)
Q Consensus 794 ~d~~~-----~~~~~--------------------------------~~~~~~~--------------~~~~~~~~~~sp 822 (953)
+|... ....+ ....++. -.-.+.|.+.|+
T Consensus 235 wd~~~~~~~~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~~deYY~~aSs 314 (409)
T KOG1838|consen 235 WDLLAASRSIETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKSVDEYYKKASS 314 (409)
T ss_pred chhhhhhhHHhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCcHHHHHhhcch
Confidence 44210 00000 0000000 011356777899
Q ss_pred ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc---cHHHHHHH-HHHHHHHhc
Q 002209 823 FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE---SIMHVLWE-TDRWLQKYC 898 (953)
Q Consensus 823 ~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~---~~~~~~~~-i~~fl~~~l 898 (953)
..++++|++|+|++++.+|+++| . .+.-. +..++ +..+-+++-..+||.-.-.. +...++++ +.+|+....
T Consensus 315 ~~~v~~I~VP~L~ina~DDPv~p--~-~~ip~-~~~~~-np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~~ 389 (409)
T KOG1838|consen 315 SNYVDKIKVPLLCINAADDPVVP--E-EAIPI-DDIKS-NPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNAI 389 (409)
T ss_pred hhhcccccccEEEEecCCCCCCC--c-ccCCH-HHHhc-CCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHHH
Confidence 99999999999999999999997 3 33332 22333 33677777777899532111 33445555 777777654
Q ss_pred c
Q 002209 899 V 899 (953)
Q Consensus 899 ~ 899 (953)
.
T Consensus 390 ~ 390 (409)
T KOG1838|consen 390 F 390 (409)
T ss_pred h
Confidence 3
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-08 Score=104.82 Aligned_cols=268 Identities=15% Similarity=0.135 Sum_probs=166.6
Q ss_pred CCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 187 ~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
....++.+.|+-||..||+.. ....+.+|+.+|+....+-.+... +-++.|..+|++|+...
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~---------~~G~~riw~~~G~l~~tl~~HkgP-----I~slKWnk~G~yilS~~---- 295 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGS---------EDGEARIWNKDGNLISTLGQHKGP-----IFSLKWNKKGTYILSGG---- 295 (524)
T ss_pred ccCCcceEEecCCCCeEEEee---------cCcEEEEEecCchhhhhhhccCCc-----eEEEEEcCCCCEEEecc----
Confidence 335789999999999999944 466777888778776666444433 77999999999999651
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC--CcccccccCCCC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDE 343 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDG 343 (953)
....+.++|. +|+.++.... ...-.+.|--+-
T Consensus 296 ---------------------------------------------vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~ 330 (524)
T KOG0273|consen 296 ---------------------------------------------VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND 330 (524)
T ss_pred ---------------------------------------------CCccEEEEeccCceEEEeeeeccCCccceEEecCc
Confidence 1234556787 8876655443 222345665444
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
++. ..+. .+.|+++.++...+. .+..+ .+.+..+.|.|-|+.|+-.
T Consensus 331 ~F~-ts~t-------------d~~i~V~kv~~~~P~~t~~GH-------------~g~V~alk~n~tg~LLaS~------ 377 (524)
T KOG0273|consen 331 EFA-TSST-------------DGCIHVCKVGEDRPVKTFIGH-------------HGEVNALKWNPTGSLLASC------ 377 (524)
T ss_pred eEe-ecCC-------------CceEEEEEecCCCcceeeecc-------------cCceEEEEECCCCceEEEe------
Confidence 432 2221 236888887754332 23322 2344678999999866554
Q ss_pred CCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCc---------eEEEEEecccCceEEEEEcCCCCCC
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSL---------ALVYESWYKTRRTRTWVISPGSKDV 493 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~---------~l~~~~~~~~~~~~l~~~d~~~~~~ 493 (953)
+.+..+-+|.. .++.....+..+...+..+.|||+|. .|+.++.+. -+..+|...+
T Consensus 378 -------SdD~TlkiWs~--~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds----tV~lwdv~~g-- 442 (524)
T KOG0273|consen 378 -------SDDGTLKIWSM--GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS----TVKLWDVESG-- 442 (524)
T ss_pred -------cCCCeeEeeec--CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC----eEEEEEccCC--
Confidence 33445666653 23333444555555566778888754 344444433 2334444443
Q ss_pred CcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcc
Q 002209 494 APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKE 573 (953)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~ 573 (953)
.+...+....+.+|. ++|||+|+++++...+. .+..|+..+++..+-..+.+.
T Consensus 443 v~i~~f~kH~~pVys------vafS~~g~ylAsGs~dg---------------------~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 443 VPIHTLMKHQEPVYS------VAFSPNGRYLASGSLDG---------------------CVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred ceeEeeccCCCceEE------EEecCCCcEEEecCCCC---------------------eeEeccccchheeEeecCCCe
Confidence 444555566666777 89999999999987533 388999988887766555543
Q ss_pred cceeeeEeeccCCccccccccCCEEEEEEec
Q 002209 574 KYYETTVALMSDQTEGDLYLNQLKILTSKES 604 (953)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 604 (953)
.| +..|+.+|.++....+.
T Consensus 496 -If-----------el~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 496 -IF-----------ELCWNAAGDKLGACASD 514 (524)
T ss_pred -EE-----------EEEEcCCCCEEEEEecC
Confidence 11 13466777766655543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-09 Score=105.23 Aligned_cols=175 Identities=17% Similarity=0.189 Sum_probs=105.4
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002209 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (953)
Q Consensus 113 ~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~ 192 (953)
.+.|+|+|++|++.... +.+..+.. .....+|+.++.. + .....+. +.....+.
T Consensus 10 ~~~W~~~G~~l~~~~~~------------------~~~~~~ks---~~~~~~l~~~~~~--~--~~~~~i~-l~~~~~I~ 63 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQT------------------RVDKSGKS---YYGEFELFYLNEK--N--IPVESIE-LKKEGPIH 63 (194)
T ss_pred EEEecccCCEEEEEEEE------------------eeccCcce---EEeeEEEEEEecC--C--Cccceee-ccCCCceE
Confidence 46799999999998762 01111111 1112355665542 2 2333332 33333589
Q ss_pred ceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002209 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (953)
Q Consensus 193 ~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 272 (953)
..+|||+|+.+|.... .....+-++|+++.....+ +... ...+.|||+|+.|+++.-.
T Consensus 64 ~~~WsP~g~~favi~g-------~~~~~v~lyd~~~~~i~~~---~~~~----~n~i~wsP~G~~l~~~g~~-------- 121 (194)
T PF08662_consen 64 DVAWSPNGNEFAVIYG-------SMPAKVTLYDVKGKKIFSF---GTQP----RNTISWSPDGRFLVLAGFG-------- 121 (194)
T ss_pred EEEECcCCCEEEEEEc-------cCCcccEEEcCcccEeEee---cCCC----ceEEEECCCCCEEEEEEcc--------
Confidence 9999999999988652 1233677777764333333 3222 4578999999999987110
Q ss_pred CCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCcccccccCCCCcEEEEEEe
Q 002209 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSI 351 (953)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~~~~~ 351 (953)
+ ..+.|..+|. +.+.-........+.++|||||++|+....
T Consensus 122 -------------------------------n-------~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 122 -------------------------------N-------LNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred -------------------------------C-------CCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 0 1245667777 444333233356778999999999998763
Q ss_pred cCCccccccCCCCCcceEEEeccCceEEE
Q 002209 352 HRPYSFIVPCGRFPRQVGVWTTDGIFVRE 380 (953)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~~~d~~g~~~~~ 380 (953)
. |..+....+.+|+..|....+
T Consensus 164 ~-------~r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 164 S-------PRLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred c-------cceeccccEEEEEecCeEeEe
Confidence 2 222334578889888776544
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.2e-09 Score=103.98 Aligned_cols=140 Identities=18% Similarity=0.149 Sum_probs=91.9
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002209 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (953)
Q Consensus 113 ~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~ 192 (953)
...|||+|++||..++- .+.|+|..+ -+..++-..- ..+.
T Consensus 13 ~c~fSp~g~yiAs~~~y----------------------------------rlviRd~~t----lq~~qlf~cl--dki~ 52 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY----------------------------------RLVIRDSET----LQLHQLFLCL--DKIV 52 (447)
T ss_pred ceeECCCCCeeeeeeee----------------------------------EEEEeccch----hhHHHHHHHH--HHhh
Confidence 67899999999998862 567777643 3333321111 2578
Q ss_pred ceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002209 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (953)
Q Consensus 193 ~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 272 (953)
..-|+.|.-+|+-... .+.-+.++++..-+-.--...+.. .+....|||||+.|..++
T Consensus 53 yieW~ads~~ilC~~y--------k~~~vqvwsl~Qpew~ckIdeg~a----gls~~~WSPdgrhiL~ts---------- 110 (447)
T KOG4497|consen 53 YIEWKADSCHILCVAY--------KDPKVQVWSLVQPEWYCKIDEGQA----GLSSISWSPDGRHILLTS---------- 110 (447)
T ss_pred heeeeccceeeeeeee--------ccceEEEEEeecceeEEEeccCCC----cceeeeECCCcceEeeee----------
Confidence 8999999999988653 234566666655443221121222 267889999999888651
Q ss_pred CCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEE
Q 002209 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISS 350 (953)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~ 350 (953)
+ ...+|.+..+ +.+...+.-+ .++..++|.|||++.+..+
T Consensus 111 -----------------------------e---------F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 111 -----------------------------E---------FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred -----------------------------c---------ceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeee
Confidence 1 2245666677 6666666555 6678899999999998887
Q ss_pred ec
Q 002209 351 IH 352 (953)
Q Consensus 351 ~~ 352 (953)
.+
T Consensus 153 Rr 154 (447)
T KOG4497|consen 153 RR 154 (447)
T ss_pred cc
Confidence 44
|
|
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-09 Score=116.02 Aligned_cols=173 Identities=16% Similarity=0.163 Sum_probs=106.1
Q ss_pred CcEEEEcCCCCCCCCCCh-hhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEE--
Q 002209 712 GFAILGGPTTPIIGEGDE-EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI-- 788 (953)
Q Consensus 712 G~~V~~~~~~~~~G~G~~-~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v-- 788 (953)
|+.|++ +|..|+|.+ ..+... .....+....+..+..... .+++.++|||+||.+++.+|+.+|+.++.++
T Consensus 86 ~~~v~a---iDl~G~g~~s~~~~~~-~y~~~~~v~~i~~~~~~~~--~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~ 159 (326)
T KOG1454|consen 86 GLRVLA---IDLPGHGYSSPLPRGP-LYTLRELVELIRRFVKEVF--VEPVSLVGHSLGGIVALKAAAYYPETVDSLVLL 159 (326)
T ss_pred ceEEEE---EecCCCCcCCCCCCCC-ceehhHHHHHHHHHHHhhc--CcceEEEEeCcHHHHHHHHHHhCcccccceeee
Confidence 699999 555666632 222211 1223333333433333322 2469999999999999999999999999999
Q ss_pred -EcccCCCCCCC--------------------CcC-------ccc-----------ccchhhhhHHHH------------
Q 002209 789 -ARSGAYNRTLT--------------------PFG-------FQN-----------EDRTLWEATSTY------------ 817 (953)
Q Consensus 789 -~~~~~~d~~~~--------------------~~~-------~~~-----------~~~~~~~~~~~~------------ 817 (953)
...+.+...-. +.. +.. .....++....+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (326)
T KOG1454|consen 160 DLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEGLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRD 239 (326)
T ss_pred cccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHhhhcceeeeccccccchhhhhhheecccccchhhh
Confidence 54443221000 000 000 000000000000
Q ss_pred --H---------hcCcccccCCCC-CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHH
Q 002209 818 --V---------EMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH 885 (953)
Q Consensus 818 --~---------~~sp~~~~~~i~-~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~ 885 (953)
. +..+...+.++. +|+||++|+.|..+| .+.+..+.+.+ ..+++++++++||... .+..+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p--~~~~~~~~~~~----pn~~~~~I~~~gH~~h-~e~Pe~ 312 (326)
T KOG1454|consen 240 ARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVP--LELAEELKKKL----PNAELVEIPGAGHLPH-LERPEE 312 (326)
T ss_pred heeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccC--HHHHHHHHhhC----CCceEEEeCCCCcccc-cCCHHH
Confidence 0 012233456666 999999999999998 77666665555 4479999999999874 577889
Q ss_pred HHHHHHHHHHHh
Q 002209 886 VLWETDRWLQKY 897 (953)
Q Consensus 886 ~~~~i~~fl~~~ 897 (953)
+...|..|+.+.
T Consensus 313 ~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 313 VAALLRSFIARL 324 (326)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.8e-08 Score=102.02 Aligned_cols=350 Identities=13% Similarity=0.168 Sum_probs=192.8
Q ss_pred chhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCc
Q 002209 99 PPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ 178 (953)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~ 178 (953)
|..+.+--.+ .-..+.|||-|.+|+..-.+ +|.+|-- .+...
T Consensus 202 p~~ie~RenW-Tetyv~wSP~GTYL~t~Hk~----------------------------------GI~lWGG---~~f~r 243 (698)
T KOG2314|consen 202 PSLIEERENW-TETYVRWSPKGTYLVTFHKQ----------------------------------GIALWGG---ESFDR 243 (698)
T ss_pred hhhhhhhhcc-eeeeEEecCCceEEEEEecc----------------------------------ceeeecC---ccHHH
Confidence 4445554444 23578999999998876653 4556531 11122
Q ss_pred eeeeecCCCCCcccceEeccCCCeEEEEEeecc--ccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCe
Q 002209 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDA--EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST 256 (953)
Q Consensus 179 ~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~--~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~ 256 (953)
.++ +.+ ..+....|||.-++|+.-+-... ..++++..+|.+||+.+|...+-........ ..-..+.||.|++
T Consensus 244 ~~R---F~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~-~~WP~frWS~DdK 318 (698)
T KOG2314|consen 244 IQR---FYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPY-LKWPIFRWSHDDK 318 (698)
T ss_pred HHh---ccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCc-cccceEEeccCCc
Confidence 223 332 25788999999999987654332 2335567899999999998765443321110 0023688999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCCCcccc
Q 002209 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTS 336 (953)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~~~ 336 (953)
.++..... .+.+|.+..+.++ +++.-.+ .++..
T Consensus 319 y~Arm~~~------------------------------------------sisIyEtpsf~ll--d~Kslki---~gIr~ 351 (698)
T KOG2314|consen 319 YFARMTGN------------------------------------------SISIYETPSFMLL--DKKSLKI---SGIRD 351 (698)
T ss_pred eeEEeccc------------------------------------------eEEEEecCceeee--cccccCC---ccccC
Confidence 99976110 0001111222222 3333223 57889
Q ss_pred cccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002209 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (953)
Q Consensus 337 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~ 415 (953)
+.|||-+..|||-.... ...+..+.++.+-. .+++...-.... .-.+.|-.+|..|++
T Consensus 352 FswsP~~~llAYwtpe~--------~~~parvtL~evPs~~~iRt~nlfnVs-------------DckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 352 FSWSPTSNLLAYWTPET--------NNIPARVTLMEVPSKREIRTKNLFNVS-------------DCKLHWQKSGDYLCV 410 (698)
T ss_pred cccCCCcceEEEEcccc--------cCCcceEEEEecCccceeeeccceeee-------------ccEEEeccCCcEEEE
Confidence 99999999999987332 11234566666653 333322211111 135889999999999
Q ss_pred EEEeccCCCcccccccCC--eEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEE-ecccCceEEEEEcCCCCC
Q 002209 416 WAETQDGGDAKVEVTPRD--IIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES-WYKTRRTRTWVISPGSKD 492 (953)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~--~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~-~~~~~~~~l~~~d~~~~~ 492 (953)
-+++....... +-.. .|+.++ ...-+.........+-.++|-|.|.+.+..+ +......+.|.+....+
T Consensus 411 kvdR~tK~~~~---g~f~n~eIfrir----eKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~- 482 (698)
T KOG2314|consen 411 KVDRHTKSKVK---GQFSNLEIFRIR----EKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK- 482 (698)
T ss_pred EEEeecccccc---ceEeeEEEEEee----ccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-
Confidence 87766432210 1112 344443 1112222233344456689999998876654 33333456777775443
Q ss_pred CCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCc
Q 002209 493 VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (953)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~ 572 (953)
++..+...+...... +.|||.|++++...... .+..|+.+|++-...++.-..+
T Consensus 483 -~~~lVk~~dk~~~N~------vfwsPkG~fvvva~l~s------------------~~g~l~F~D~~~a~~k~~~~~e- 536 (698)
T KOG2314|consen 483 -KPSLVKELDKKFANT------VFWSPKGRFVVVAALVS------------------RRGDLEFYDTDYADLKDTASPE- 536 (698)
T ss_pred -chhhhhhhcccccce------EEEcCCCcEEEEEEecc------------------cccceEEEecchhhhhhccCcc-
Confidence 444432222211111 78999999998876422 1223888887642322222111
Q ss_pred ccceeeeEeeccCCccccccccCCEEEEEEe
Q 002209 573 EKYYETTVALMSDQTEGDLYLNQLKILTSKE 603 (953)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (953)
+| ......|+|.|++++...+
T Consensus 537 --h~--------~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 537 --HF--------AATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred --cc--------ccccceECCCCCEEEEeee
Confidence 01 1123568888886664433
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.7e-08 Score=106.44 Aligned_cols=258 Identities=14% Similarity=0.129 Sum_probs=140.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
....+++||||++|+..... . ..|.+|++..+|.......+ +.+.
T Consensus 36 ~~~~l~~spd~~~lyv~~~~------------------------~--------~~i~~~~~~~~g~l~~~~~~---~~~~ 80 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRP------------------------E--------FRVLSYRIADDGALTFAAES---PLPG 80 (330)
T ss_pred CCccEEECCCCCEEEEEECC------------------------C--------CcEEEEEECCCCceEEeeee---cCCC
Confidence 35578999999988665432 0 25677777533322211222 2223
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC-Ccee-ecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKAR-PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~-g~~~-~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
......++|||++|+.+.. +...|.+++++. |... .+...+.. .....++++|||+.|+++.
T Consensus 81 ~p~~i~~~~~g~~l~v~~~--------~~~~v~v~~~~~~g~~~~~~~~~~~~---~~~~~~~~~p~g~~l~v~~----- 144 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASY--------NANCVSVSPLDKDGIPVAPIQIIEGL---EGCHSANIDPDNRTLWVPC----- 144 (330)
T ss_pred CceEEEECCCCCEEEEEEc--------CCCeEEEEEECCCCCCCCceeeccCC---CcccEeEeCCCCCEEEEee-----
Confidence 4567899999998876542 134566666642 3221 11111110 0034677999999998661
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C-Ccee-------EeCCCCcccccc
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D-GTVK-------EIGPPAVYTSLD 338 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~-g~~~-------~l~~~~~~~~~~ 338 (953)
++...|+++++ + |... .+..+.....++
T Consensus 145 -------------------------------------------~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~ 181 (330)
T PRK11028 145 -------------------------------------------LKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV 181 (330)
T ss_pred -------------------------------------------CCCCEEEEEEECCCCcccccCCCceecCCCCCCceEE
Confidence 03356778887 3 4332 111224456789
Q ss_pred cCCCCcEEEEEEecCCccccccCCCCCcceEEEecc--CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002209 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (953)
Q Consensus 339 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~ 416 (953)
|+|||++++.+... .+.|.+|+++ ++..+.+..... .|...... .....+.++|||+.++..
T Consensus 182 ~~pdg~~lyv~~~~------------~~~v~v~~~~~~~~~~~~~~~~~~---~p~~~~~~-~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 182 FHPNQQYAYCVNEL------------NSSVDVWQLKDPHGEIECVQTLDM---MPADFSDT-RWAADIHITPDGRHLYAC 245 (330)
T ss_pred ECCCCCEEEEEecC------------CCEEEEEEEeCCCCCEEEEEEEec---CCCcCCCC-ccceeEEECCCCCEEEEe
Confidence 99999998877531 3489999987 333332222110 11100000 112347899999865443
Q ss_pred EEeccCCCcccccccCCeEEEEecCCCCCCCceEEe--ecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~--~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
++ ..+.|.++++ ..+++..+.+. ........+.++|||++|+.+...+ ....+|.++.+++
T Consensus 246 -~~-----------~~~~I~v~~i-~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~-~~v~v~~~~~~~g 308 (330)
T PRK11028 246 -DR-----------TASLISVFSV-SEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS-HHISVYEIDGETG 308 (330)
T ss_pred -cC-----------CCCeEEEEEE-eCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC-CcEEEEEEcCCCC
Confidence 11 1345666665 11233222221 1122345689999999998875433 3346777765553
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.08 E-value=8e-08 Score=109.39 Aligned_cols=318 Identities=12% Similarity=0.060 Sum_probs=174.8
Q ss_pred CCCeEEEEEeeccccCCCCcceEEEEECC--CCce-eecccCCCcc--c-cccccceEEecCCeEEEEEecCCCCCCCCC
Q 002209 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVD--TGKA-RPLFQSPDIY--L-NAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (953)
Q Consensus 199 DG~~laf~~~~~~~~~~~~~~~l~~~d~~--~g~~-~~lt~~~~~~--~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 272 (953)
.|.+.+|....+ +.....+|+.... .|.. +.|....... . ...+..+.+||||++|+|+....+.
T Consensus 77 ~g~~~y~~~~~~----~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~----- 147 (414)
T PF02897_consen 77 RGGYYYYSRNQG----GKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGS----- 147 (414)
T ss_dssp ETTEEEEEEE-S----S-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTS-----
T ss_pred ECCeEEEEEEcC----CCceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCC-----
Confidence 466666665422 3334556666665 3443 3333221100 0 1123467889999999998322111
Q ss_pred CCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeC-CCCcccccccCCCCcEEEEEE
Q 002209 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG-PPAVYTSLDPSPDEKYILISS 350 (953)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~-~~~~~~~~~~SpDG~~l~~~~ 350 (953)
....|+++|+ +|+...-. .......+.|++||+.++|+.
T Consensus 148 ---------------------------------------e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 148 ---------------------------------------EWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTR 188 (414)
T ss_dssp ---------------------------------------SEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEE
T ss_pred ---------------------------------------ceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEE
Confidence 2246889999 88543211 112223389999999999998
Q ss_pred ecCCccccccCCCCCcceEEEeccCceE--EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002209 351 IHRPYSFIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (953)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~~d~~g~~~--~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (953)
.+....-. ....+.+|+++.+.+... +.|...+... .....+.+|+||+.|++.....
T Consensus 189 ~~~~~~~~--~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~----------~~~~~~~~s~d~~~l~i~~~~~-------- 248 (414)
T PF02897_consen 189 FDEDQRTS--DSGYPRQVYRHKLGTPQSEDELVFEEPDEP----------FWFVSVSRSKDGRYLFISSSSG-------- 248 (414)
T ss_dssp CSTTTSS---CCGCCEEEEEEETTS-GGG-EEEEC-TTCT----------TSEEEEEE-TTSSEEEEEEESS--------
T ss_pred eCcccccc--cCCCCcEEEEEECCCChHhCeeEEeecCCC----------cEEEEEEecCcccEEEEEEEcc--------
Confidence 66521100 122356899999875432 2333322110 0023578899999766553221
Q ss_pred cccCCeEEEEecCCCCC-----CCceEEeeccccc-CCeeeccCCceEEEEEecccCceEEEEEcCCCCCC-CcE-Eeec
Q 002209 429 VTPRDIIYTQQAEPVQG-----EGPEILHKLDLRY-GGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV-APR-ILFD 500 (953)
Q Consensus 429 ~~~~~~l~~~d~~~~~g-----~~~~~l~~~~~~~-~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~-~~~-~~~~ 500 (953)
.....+|++++ .. ...+.+....... ..+... |..+++..+.+..+.+|+.++++.... ... .+..
T Consensus 249 -~~~s~v~~~d~---~~~~~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 249 -TSESEVYLLDL---DDGGSPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp -SSEEEEEEEEC---CCTTTSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred -ccCCeEEEEec---cccCCCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC
Confidence 11368999996 33 2455565433222 223332 777777777766667999999988632 112 2322
Q ss_pred CCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECC-CCceEEEeccCcccceeee
Q 002209 501 RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN-TGSKERIWESDKEKYYETT 579 (953)
Q Consensus 501 ~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~-~~~~~~l~~~~~~~~~~~~ 579 (953)
....... -.++..+.+|+...... ..+.|+++++. +.....+...... .+
T Consensus 323 ~~~~~~l-------~~~~~~~~~Lvl~~~~~------------------~~~~l~v~~~~~~~~~~~~~~p~~g----~v 373 (414)
T PF02897_consen 323 EDEDVSL-------EDVSLFKDYLVLSYREN------------------GSSRLRVYDLDDGKESREIPLPEAG----SV 373 (414)
T ss_dssp -SSSEEE-------EEEEEETTEEEEEEEET------------------TEEEEEEEETT-TEEEEEEESSSSS----EE
T ss_pred CCCceeE-------EEEEEECCEEEEEEEEC------------------CccEEEEEECCCCcEEeeecCCcce----EE
Confidence 2211011 23455566666555322 25579999999 5555555444322 11
Q ss_pred EeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEec
Q 002209 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITD 626 (953)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~ 626 (953)
.. .+..+++..++|..++..+|+.+|.+|+.+++.+.|+.
T Consensus 374 ~~-------~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 374 SG-------VSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EE-------EES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEEE
T ss_pred ec-------cCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEEe
Confidence 11 23356788999999999999999999999999888763
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.4e-09 Score=109.99 Aligned_cols=191 Identities=23% Similarity=0.250 Sum_probs=120.2
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHh--
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAH-- 779 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~-- 779 (953)
.....|+++||+|+.+|| .|.|..+.........+-|.+.|...+... +.-...+++++|+|.||..+++++..
T Consensus 17 ~~l~~~L~~GyaVv~pDY---~Glg~~y~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~~ 93 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDY---EGLGTPYLNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELAP 93 (290)
T ss_pred HHHHHHHHCCCEEEecCC---CCCCCcccCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHhH
Confidence 345568899999999777 455554333333345566666666655442 22234699999999999999888754
Q ss_pred --CCCc---ccEEEEcccCCCCCCC-----C--c---------C----ccccc-----------chhhh-----------
Q 002209 780 --APHL---FCCGIARSGAYNRTLT-----P--F---------G----FQNED-----------RTLWE----------- 812 (953)
Q Consensus 780 --~p~~---~~a~v~~~~~~d~~~~-----~--~---------~----~~~~~-----------~~~~~----------- 812 (953)
.|++ +.++++.+++.|.... . + + ++... .....
T Consensus 94 ~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~~~ 173 (290)
T PF03583_consen 94 SYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLADIV 173 (290)
T ss_pred HhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHHHH
Confidence 3554 6788887776652100 0 0 0 00000 00000
Q ss_pred ------------------------h---HHHHHhcCc-ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCC-C
Q 002209 813 ------------------------A---TSTYVEMSP-FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-A 863 (953)
Q Consensus 813 ------------------------~---~~~~~~~sp-~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g-~ 863 (953)
+ ...+.+.+. ...-..-+.|++|.||..|.+|| +..+.+++++++++| .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP--~~~~~~l~~~~c~~G~a 251 (290)
T PF03583_consen 174 AEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVP--PADTDALVAKWCAAGGA 251 (290)
T ss_pred HHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCC--hHHHHHHHHHHHHcCCC
Confidence 0 000111110 00011225799999999999999 999999999999999 7
Q ss_pred cEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccCCC
Q 002209 864 LCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 864 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (953)
+++++.+++.+|..... .-....++||...+...+
T Consensus 252 ~V~~~~~~~~~H~~~~~----~~~~~a~~Wl~~rf~G~~ 286 (290)
T PF03583_consen 252 DVEYVRYPGGGHLGAAF----ASAPDALAWLDDRFAGKP 286 (290)
T ss_pred CEEEEecCCCChhhhhh----cCcHHHHHHHHHHHCCCC
Confidence 99999999999975321 223567899999987654
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.9e-08 Score=95.71 Aligned_cols=252 Identities=10% Similarity=0.050 Sum_probs=153.2
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCC
Q 002209 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (953)
Q Consensus 109 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~ 188 (953)
..+.++.||+||..++..+.+ ..|.|+|.. +| .+.+.|..-.
T Consensus 15 ~~i~sl~fs~~G~~litss~d---------------------------------Dsl~LYd~~-~g--~~~~ti~skk-- 56 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSED---------------------------------DSLRLYDSL-SG--KQVKTINSKK-- 56 (311)
T ss_pred CceeEEEecCCCCEEEEecCC---------------------------------CeEEEEEcC-CC--ceeeEeeccc--
Confidence 357789999999999986654 257899984 33 3344443222
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+....|.-....+.+.++ .++..|..+++.+.+..+...+.... +.++.-+|-+..++.+
T Consensus 57 yG~~~~~Fth~~~~~i~sSt-------k~d~tIryLsl~dNkylRYF~GH~~~----V~sL~~sP~~d~FlS~------- 118 (311)
T KOG1446|consen 57 YGVDLACFTHHSNTVIHSST-------KEDDTIRYLSLHDNKYLRYFPGHKKR----VNSLSVSPKDDTFLSS------- 118 (311)
T ss_pred ccccEEEEecCCceEEEccC-------CCCCceEEEEeecCceEEEcCCCCce----EEEEEecCCCCeEEec-------
Confidence 24677788777777777553 34678999999998888877665544 7788889988766644
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCcccccccCCCCcEEE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYIL 347 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~ 347 (953)
..| ..|..+|+ ..+-+-+-....-.-.++.|.|-.+|
T Consensus 119 ---------------------------------S~D---------~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA 156 (311)
T KOG1446|consen 119 ---------------------------------SLD---------KTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFA 156 (311)
T ss_pred ---------------------------------ccC---------CeEEeeEecCCCCceEEecCCCcceeECCCCcEEE
Confidence 111 23444454 33222221112223468999995555
Q ss_pred EEEecCCccccccCCCCCcceEEEecc--CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
..... ..|.++|+. ++.+...-.... ........+.||||||.|+..
T Consensus 157 ~~~~~-------------~~IkLyD~Rs~dkgPF~tf~i~~---------~~~~ew~~l~FS~dGK~iLls--------- 205 (311)
T KOG1446|consen 157 LANGS-------------ELIKLYDLRSFDKGPFTTFSITD---------NDEAEWTDLEFSPDGKSILLS--------- 205 (311)
T ss_pred EecCC-------------CeEEEEEecccCCCCceeEccCC---------CCccceeeeEEcCCCCEEEEE---------
Confidence 54421 278899986 222222111110 011223568999999998887
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccc---cCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecC
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLR---YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~---~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 501 (953)
...+.++++|+ .+|.....+...... ..+..|+|||+.|+..+.++ +|.+++++++ .....+..
T Consensus 206 ----T~~s~~~~lDA--f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg----~i~vw~~~tg--~~v~~~~~ 272 (311)
T KOG1446|consen 206 ----TNASFIYLLDA--FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDG----TIHVWNLETG--KKVAVLRG 272 (311)
T ss_pred ----eCCCcEEEEEc--cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCC----cEEEEEcCCC--cEeeEecC
Confidence 44667899997 566433333332221 23578999999988776544 4666666664 34444444
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.9e-08 Score=103.97 Aligned_cols=134 Identities=9% Similarity=0.037 Sum_probs=74.7
Q ss_pred ccccCC-CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCce
Q 002209 336 SLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (953)
Q Consensus 336 ~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~ 414 (953)
.+.+++ ||+++..+. . ++|++.|+.+.+...................-..|...++++|||++++
T Consensus 198 rP~~~~~dg~~~~vs~-e-------------G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 198 HPAYSNKSGRLVWPTY-T-------------GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred CCceEcCCCcEEEEec-C-------------CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 445677 886665544 2 4899999876544433221110000000001112333489999999877
Q ss_pred EEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
....... ......+.+.|+++|. ..++............++++||||+.++|..+.... .|.++|..++
T Consensus 264 V~~~~~~---~~thk~~~~~V~ViD~---~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~--~VsViD~~t~ 332 (352)
T TIGR02658 264 LLADQRA---KWTHKTASRFLFVVDA---KTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDK--TLYIFDAETG 332 (352)
T ss_pred EEecCCc---cccccCCCCEEEEEEC---CCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCC--cEEEEECcCC
Confidence 7543211 1112234568999996 434333222334456789999999966665554433 6889998875
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-09 Score=123.34 Aligned_cols=113 Identities=11% Similarity=0.152 Sum_probs=80.2
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCC
Q 002209 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (953)
Q Consensus 109 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~ 188 (953)
..+.++++||||+++||+... .+.+.+.. ..||+.+. + +..++++ .+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~-------------------~~~~~d~~------s~Lwv~~~--g---g~~~~lt---~g 396 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTL-------------------GRGAPDPA------SSLWVGPL--G---GVAVQVL---EG 396 (591)
T ss_pred cCcccceECCCCCEEEEEEee-------------------cCCCCCcc------eEEEEEeC--C---Ccceeee---cC
Confidence 357789999999999999864 22222223 37899886 2 2335554 23
Q ss_pred CcccceEeccCCCeEEEEEeecc---ccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDA---EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~---~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
.....|+|||||++|+|..+... ....++..+||++++++++.++ ..+.. +..+.|||||++|+|.
T Consensus 397 ~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~-----Issl~wSpDG~RiA~i 465 (591)
T PRK13616 397 HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGP-----ISELQLSRDGVRAAMI 465 (591)
T ss_pred CCCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCC-----cCeEEECCCCCEEEEE
Confidence 35899999999999999865311 1223456799999999988765 22222 7799999999999988
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-08 Score=96.18 Aligned_cols=229 Identities=13% Similarity=0.142 Sum_probs=130.3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..+.|.-||..|+-.+ -++...+|-++ .+ +.+......+..+.+..+.|.|-..-+++++
T Consensus 22 ~v~Sv~wn~~g~~lasgs-------~dktv~v~n~e--~~--r~~~~~~~~gh~~svdql~w~~~~~d~~ata------- 83 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGS-------FDKTVSVWNLE--RD--RFRKELVYRGHTDSVDQLCWDPKHPDLFATA------- 83 (313)
T ss_pred cceEEEEcccCceeeecc-------cCCceEEEEec--ch--hhhhhhcccCCCcchhhheeCCCCCcceEEe-------
Confidence 577899999999999754 22344555554 43 2233223333333477888986665444331
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCC-CCcccccccCCCCcEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-PAVYTSLDPSPDEKYIL 347 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~-~~~~~~~~~SpDG~~l~ 347 (953)
++...|.++|. .++.....+ .+....+.|||||++++
T Consensus 84 -----------------------------------------s~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~ 122 (313)
T KOG1407|consen 84 -----------------------------------------SGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIA 122 (313)
T ss_pred -----------------------------------------cCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEE
Confidence 13345667787 665544443 35556789999999999
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
+...++ .|..+|.....+.. ..+. + ..+..+.|+-++ .+.|.+
T Consensus 123 ~~~kdD-------------~it~id~r~~~~~~--~~~~----~-------~e~ne~~w~~~n-d~Fflt---------- 165 (313)
T KOG1407|consen 123 VGNKDD-------------RITFIDARTYKIVN--EEQF----K-------FEVNEISWNNSN-DLFFLT---------- 165 (313)
T ss_pred EecCcc-------------cEEEEEecccceee--hhcc----c-------ceeeeeeecCCC-CEEEEe----------
Confidence 987554 56666665332221 1111 1 112357788444 344442
Q ss_pred ccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCcccc
Q 002209 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVY 507 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 507 (953)
.+.+.+-++.. | .-.....+..+......+.|+|+||+++..+.+.. ..||-++--- -.+.++...... .
T Consensus 166 --~GlG~v~ILsy-p-sLkpv~si~AH~snCicI~f~p~GryfA~GsADAl--vSLWD~~ELi---C~R~isRldwpV-R 235 (313)
T KOG1407|consen 166 --NGLGCVEILSY-P-SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL--VSLWDVDELI---CERCISRLDWPV-R 235 (313)
T ss_pred --cCCceEEEEec-c-ccccccccccCCcceEEEEECCCCceEeeccccce--eeccChhHhh---hheeeccccCce-E
Confidence 22333433332 1 11222335666666777999999999998765442 2566554111 124444433322 1
Q ss_pred CCCCCCCeEeccCCCEEEEEeee
Q 002209 508 SDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 508 ~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
. ++||.||++|+..+.+
T Consensus 236 T------lSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 236 T------LSFSHDGRMLASASED 252 (313)
T ss_pred E------EEeccCcceeeccCcc
Confidence 1 8999999999987643
|
|
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.5e-09 Score=114.93 Aligned_cols=69 Identities=10% Similarity=0.126 Sum_probs=57.1
Q ss_pred ccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC-CCccCCCcccHHHHHHHHHHHHHH
Q 002209 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF-ESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 825 ~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
.+.++++|+|+++|+.|..+| ++.++++.+.++..+...+++++++ .||... .+....+.+.+.+||++
T Consensus 318 ~L~~I~~PtLvI~G~~D~l~p--~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~-le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 318 ALSNIEANVLMIPCKQDLLQP--PRYNYKMVDILQKQGKYAEVYEIESINGHMAG-VFDIHLFEKKIYEFLNR 387 (389)
T ss_pred HHhcCCCCEEEEEeCCCCCCC--HHHHHHHHHHhhhcCCCeEEEEECCCCCcchh-hcCHHHHHHHHHHHHcc
Confidence 455789999999999999998 9999999998886666789999985 899763 46677788888888865
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.4e-09 Score=104.14 Aligned_cols=125 Identities=13% Similarity=0.140 Sum_probs=84.7
Q ss_pred hhccceEEEEEc-CCceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCC
Q 002209 310 YYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL 386 (953)
Q Consensus 310 ~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~ 386 (953)
+|+...||.++. +.....+... +.+.+++|||+|+.+++.... .+..+.+||+++..+..+...
T Consensus 35 ~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~-----------~~~~v~lyd~~~~~i~~~~~~-- 101 (194)
T PF08662_consen 35 YYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS-----------MPAKVTLYDVKGKKIFSFGTQ-- 101 (194)
T ss_pred EEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc-----------CCcccEEEcCcccEeEeecCC--
Confidence 346778999988 6655555433 568999999999999888632 234899999986555544331
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee-cccccCCeeecc
Q 002209 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCD 465 (953)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~-~~~~~~~~~~Sp 465 (953)
....+.|||+|+.++..... +..+.+.+||. . +...+.. .......+.|||
T Consensus 102 -------------~~n~i~wsP~G~~l~~~g~~----------n~~G~l~~wd~---~--~~~~i~~~~~~~~t~~~WsP 153 (194)
T PF08662_consen 102 -------------PRNTISWSPDGRFLVLAGFG----------NLNGDLEFWDV---R--KKKKISTFEHSDATDVEWSP 153 (194)
T ss_pred -------------CceEEEECCCCCEEEEEEcc----------CCCcEEEEEEC---C--CCEEeeccccCcEEEEEEcC
Confidence 12358999999988876110 12356889996 2 3334422 233456789999
Q ss_pred CCceEEEEEe
Q 002209 466 DSLALVYESW 475 (953)
Q Consensus 466 Dg~~l~~~~~ 475 (953)
||++|+.+..
T Consensus 154 dGr~~~ta~t 163 (194)
T PF08662_consen 154 DGRYLATATT 163 (194)
T ss_pred CCCEEEEEEe
Confidence 9999987753
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.7e-09 Score=116.33 Aligned_cols=146 Identities=10% Similarity=0.059 Sum_probs=97.8
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
..+..+.|+|-|-+.|..+.+. .-.+|..+...+-++-.... .-+.-+.|.|++.
T Consensus 494 ~PVwdV~F~P~GyYFatas~D~-------------tArLWs~d~~~PlRifaghl------------sDV~cv~FHPNs~ 548 (707)
T KOG0263|consen 494 APVWDVQFAPRGYYFATASHDQ-------------TARLWSTDHNKPLRIFAGHL------------SDVDCVSFHPNSN 548 (707)
T ss_pred cceeeEEecCCceEEEecCCCc-------------eeeeeecccCCchhhhcccc------------cccceEEECCccc
Confidence 6677788999997777665332 55678777544333333222 2234478999987
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
.++-. +.+..+.+||+ .+|...+..+++...+..++|||+|++|+.++.++ .|-++|+.++
T Consensus 549 Y~aTG-------------SsD~tVRlWDv--~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~----~I~iWDl~~~ 609 (707)
T KOG0263|consen 549 YVATG-------------SSDRTVRLWDV--STGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG----LIKIWDLANG 609 (707)
T ss_pred ccccC-------------CCCceEEEEEc--CCCcEEEEecCCCCceEEEEEcCCCceEeecccCC----cEEEEEcCCC
Confidence 54432 44557888996 56666677788888999999999999999876554 4555566664
Q ss_pred CCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
+...........+++ ++||.||..|+....
T Consensus 610 --~~v~~l~~Ht~ti~S------lsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 610 --SLVKQLKGHTGTIYS------LSFSRDGNVLASGGA 639 (707)
T ss_pred --cchhhhhcccCceeE------EEEecCCCEEEecCC
Confidence 333333333444555 899999999887763
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.3e-09 Score=127.15 Aligned_cols=213 Identities=14% Similarity=0.102 Sum_probs=121.2
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCC
Q 002209 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (953)
Q Consensus 645 ~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~ 724 (953)
...+|..++.+.+-++ ..|+||++||.+... ..| . .....| ..||.|++ +|.+
T Consensus 8 ~~~~g~~l~~~~~g~~--------~~~~ivllHG~~~~~-----------~~w---~-~~~~~L-~~~~~Vi~---~D~~ 60 (582)
T PRK05855 8 VSSDGVRLAVYEWGDP--------DRPTVVLVHGYPDNH-----------EVW---D-GVAPLL-ADRFRVVA---YDVR 60 (582)
T ss_pred EeeCCEEEEEEEcCCC--------CCCeEEEEcCCCchH-----------HHH---H-HHHHHh-hcceEEEE---ecCC
Confidence 3458888887665321 157899999963211 111 1 223334 78999999 5556
Q ss_pred CCCChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccCC-CC-
Q 002209 725 GEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAY-NR- 796 (953)
Q Consensus 725 G~G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~-d~- 796 (953)
|+|.+.... .......+|+..+++.+. . ..++.|+||||||.+++.++... +.++...+..++.. +.
T Consensus 61 G~G~S~~~~~~~~~~~~~~a~dl~~~i~~l~----~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~ 135 (582)
T PRK05855 61 GAGRSSAPKRTAAYTLARLADDFAAVIDAVS----P-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHV 135 (582)
T ss_pred CCCCCCCCCcccccCHHHHHHHHHHHHHHhC----C-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHH
Confidence 788775321 235667778777777652 1 23599999999999988777652 23344333333211 00
Q ss_pred ------CC---CCcCc--------c----------c---------ccchhhh------------------------hHHH
Q 002209 797 ------TL---TPFGF--------Q----------N---------EDRTLWE------------------------ATST 816 (953)
Q Consensus 797 ------~~---~~~~~--------~----------~---------~~~~~~~------------------------~~~~ 816 (953)
.. .+..+ . . .....+. ....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (582)
T PRK05855 136 GFWLRSGLRRPTPRRLARALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKL 215 (582)
T ss_pred HHHHhhcccccchhhhhHHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHH
Confidence 00 00000 0 0 0000000 0000
Q ss_pred HHh----cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHH
Q 002209 817 YVE----MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDR 892 (953)
Q Consensus 817 ~~~----~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~ 892 (953)
+.. .........+++|+|+++|++|..+| ......+.+.+. ..++++++ +||... .+....+.+.+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~--~~~~~~~~~~~~----~~~~~~~~-~gH~~~-~e~p~~~~~~i~~ 287 (582)
T PRK05855 216 YRANMIRSLSRPRERYTDVPVQLIVPTGDPYVR--PALYDDLSRWVP----RLWRREIK-AGHWLP-MSHPQVLAAAVAE 287 (582)
T ss_pred HHhhhhhhhccCccCCccCceEEEEeCCCcccC--HHHhccccccCC----cceEEEcc-CCCcch-hhChhHHHHHHHH
Confidence 000 00011133478999999999999998 777776654442 24666776 589764 5667778888999
Q ss_pred HHHHh
Q 002209 893 WLQKY 897 (953)
Q Consensus 893 fl~~~ 897 (953)
|+.+.
T Consensus 288 fl~~~ 292 (582)
T PRK05855 288 FVDAV 292 (582)
T ss_pred HHHhc
Confidence 99874
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.1e-07 Score=91.77 Aligned_cols=252 Identities=10% Similarity=0.065 Sum_probs=141.3
Q ss_pred EEEEEc-CCceeEeCCC----CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEe---ccCCC
Q 002209 316 LVLVSL-DGTVKEIGPP----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVREL---CDLPL 386 (953)
Q Consensus 316 l~~~~~-~g~~~~l~~~----~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l---~~~~~ 386 (953)
-|.+|- +|+.+.+... .....+++++||++|+.+..+. +.|.++.+. .+.+..+ ..+..
T Consensus 68 ay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~------------g~v~v~p~~~dG~l~~~v~~~~h~g 135 (346)
T COG2706 68 AYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS------------GSVSVYPLQADGSLQPVVQVVKHTG 135 (346)
T ss_pred EEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC------------ceEEEEEcccCCccccceeeeecCC
Confidence 345555 5777666533 3336789999999888776443 356666664 2332222 11111
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE----eecccccCCee
Q 002209 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL----HKLDLRYGGIS 462 (953)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l----~~~~~~~~~~~ 462 (953)
. .|- ..-...-.-...++|||+.++.. + -+.++++++++ +.|..... .......+.+.
T Consensus 136 ~--~p~-~rQ~~~h~H~a~~tP~~~~l~v~-D-----------LG~Dri~~y~~---~dg~L~~~~~~~v~~G~GPRHi~ 197 (346)
T COG2706 136 S--GPH-ERQESPHVHSANFTPDGRYLVVP-D-----------LGTDRIFLYDL---DDGKLTPADPAEVKPGAGPRHIV 197 (346)
T ss_pred C--CCC-ccccCCccceeeeCCCCCEEEEe-e-----------cCCceEEEEEc---ccCccccccccccCCCCCcceEE
Confidence 1 010 00000012346789999866544 1 23568999997 33332222 12233345689
Q ss_pred eccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEec
Q 002209 463 WCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNG 542 (953)
Q Consensus 463 ~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~ 542 (953)
|.|+|+..+...+-+ ....+|.++...+..+..+....-.++..+....-.+..|+||++|+......
T Consensus 198 FHpn~k~aY~v~EL~-stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~----------- 265 (346)
T COG2706 198 FHPNGKYAYLVNELN-STVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH----------- 265 (346)
T ss_pred EcCCCcEEEEEeccC-CEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC-----------
Confidence 999999877665544 33467888876543232222222223333333333378999999998775432
Q ss_pred CCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002209 543 NGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (953)
Q Consensus 543 ~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~ 622 (953)
+.-.++.+|.++++...+....-+ ....+ ...|+++|+.|+...+... .-.+|.++..+|+..
T Consensus 266 -------dsI~~f~V~~~~g~L~~~~~~~te-------g~~PR--~F~i~~~g~~Liaa~q~sd-~i~vf~~d~~TG~L~ 328 (346)
T COG2706 266 -------DSIAVFSVDPDGGKLELVGITPTE-------GQFPR--DFNINPSGRFLIAANQKSD-NITVFERDKETGRLT 328 (346)
T ss_pred -------CeEEEEEEcCCCCEEEEEEEeccC-------CcCCc--cceeCCCCCEEEEEccCCC-cEEEEEEcCCCceEE
Confidence 122366777778876655332211 00011 2467888887777666554 367899999999877
Q ss_pred EEec
Q 002209 623 QITD 626 (953)
Q Consensus 623 ~Lt~ 626 (953)
.+..
T Consensus 329 ~~~~ 332 (346)
T COG2706 329 LLGR 332 (346)
T ss_pred eccc
Confidence 7664
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-08 Score=112.58 Aligned_cols=189 Identities=16% Similarity=0.125 Sum_probs=102.0
Q ss_pred CCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCC-----Chh---h--------
Q 002209 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG-----DEE---A-------- 731 (953)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G-----~~~---~-------- 731 (953)
+++|+|||.||-. .++..+...+..||++||+|++++.+|..+.. ... .
T Consensus 98 ~~~PvvIFSHGlg---------------g~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~ 162 (379)
T PF03403_consen 98 GKFPVVIFSHGLG---------------GSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYL 162 (379)
T ss_dssp S-EEEEEEE--TT-----------------TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT-------
T ss_pred CCCCEEEEeCCCC---------------cchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCcccccccccccc
Confidence 3599999999931 12233446677899999999998888754310 000 0
Q ss_pred ------------hh------hhHHHHHHHHHHHHHHHHHc--------------------CCCCCCcEEEEEeChHHHHH
Q 002209 732 ------------ND------RFVEQLVACAEAAVEEVVRR--------------------GVAHPSKIAVGGHSYGAFMT 773 (953)
Q Consensus 732 ------------~~------~~~~~~~~D~~~~~~~l~~~--------------------~~~d~~~i~l~G~S~GG~~a 773 (953)
.. .....-..|+..+++.|.+. +.+|.++|+++|||+||..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa 242 (379)
T PF03403_consen 163 EEEWIPLRDFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATA 242 (379)
T ss_dssp --EEEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHH
T ss_pred ccceeccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHH
Confidence 00 01122366777777777531 24678899999999999999
Q ss_pred HHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHH
Q 002209 774 ANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDR 853 (953)
Q Consensus 774 ~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~ 853 (953)
+.++.+. .+|+++|+..|.. .+. .. .....++.|+|+|+.+. ..- ..+...
T Consensus 243 ~~~l~~d-~r~~~~I~LD~W~----~Pl----~~----------------~~~~~i~~P~L~InSe~-f~~---~~~~~~ 293 (379)
T PF03403_consen 243 LQALRQD-TRFKAGILLDPWM----FPL----GD----------------EIYSKIPQPLLFINSES-FQW---WENIFR 293 (379)
T ss_dssp HHHHHH--TT--EEEEES-------TTS-----G----------------GGGGG--S-EEEEEETT-T-----HHHHHH
T ss_pred HHHHhhc-cCcceEEEeCCcc----cCC----Cc----------------ccccCCCCCEEEEECcc-cCC---hhhHHH
Confidence 9999988 6899999887742 111 00 01134678999998884 432 333333
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCC------Cc------------ccH----HHHHHHHHHHHHHhccCC
Q 002209 854 FFNALKGHGALCRLVILPFESHGYA------AR------------ESI----MHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~~~------~~------------~~~----~~~~~~i~~fl~~~l~~~ 901 (953)
+.+ +........++.+.|..|.-. .. .+. ....+.+++||++||+..
T Consensus 294 ~~~-~~~~~~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~~~ 362 (379)
T PF03403_consen 294 MKK-VISNNKESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLGLH 362 (379)
T ss_dssp HHT-T--TTS-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHH-HhccCCCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcCCc
Confidence 333 333445678889999999421 00 011 234457899999998743
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.5e-07 Score=97.29 Aligned_cols=92 Identities=14% Similarity=-0.022 Sum_probs=54.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeecc-ccCCCCcceEEEEECCCCceeecccCCCc-
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDA-EDSSSSKLRVWVADVDTGKARPLFQSPDI- 240 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~-~~~~~~~~~l~~~d~~~g~~~~lt~~~~~- 240 (953)
++|.+.|..+ .+ .+..++.+..... ..||||+.|+.+...-+ ...+.....|-++|+++++...=...+..
T Consensus 27 ~~v~ViD~~~----~~--v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEA----GR--VLGMTDGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCC----CE--EEEEEEccCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 4788988743 22 2222334444444 49999999987665221 12233456789999999876432222211
Q ss_pred cc--cccccceEEecCCeEEEEE
Q 002209 241 YL--NAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 241 ~~--~~~~~~~~wspDg~~l~~~ 261 (953)
+. -.....++.||||++|++.
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred hhhccCccceEEECCCCCEEEEe
Confidence 10 0012378899999999976
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-08 Score=103.71 Aligned_cols=220 Identities=20% Similarity=0.197 Sum_probs=125.5
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcC----cEE
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG----FAI 715 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G----~~V 715 (953)
+.+.+.+.-..+....+|+|+++.+.. ++|++++.||-.+. .+... ......|.+.| .++
T Consensus 70 ~~~~~~~~l~~~~~~vv~lppgy~~~~--k~pvl~~~DG~~~~-------------~~g~i-~~~~dsli~~g~i~pai~ 133 (299)
T COG2382 70 EEILYSSELLSERRRVVYLPPGYNPLE--KYPVLYLQDGQDWF-------------RSGRI-PRILDSLIAAGEIPPAIL 133 (299)
T ss_pred hhhhhhhhhccceeEEEEeCCCCCccc--cccEEEEeccHHHH-------------hcCCh-HHHHHHHHHcCCCCCceE
Confidence 444454444456777899999987755 49999999994211 11111 12334455544 666
Q ss_pred EEcCCCCCCCCCChhh-hhhhHHHHHHHHHHHHHHHHHcCC--CCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEccc
Q 002209 716 LGGPTTPIIGEGDEEA-NDRFVEQLVACAEAAVEEVVRRGV--AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~-~~~~~~~~~~D~~~~~~~l~~~~~--~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (953)
+.+++.+-.-...... +..+...... +.+=++.+... -+.++-+|+|.|+||.++++++.++|++|-.+++.+|
T Consensus 134 vgid~~d~~~R~~~~~~n~~~~~~L~~---eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sp 210 (299)
T COG2382 134 VGIDYIDVKKRREELHCNEAYWRFLAQ---ELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSG 210 (299)
T ss_pred EecCCCCHHHHHHHhcccHHHHHHHHH---HhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCC
Confidence 6655533211111111 1111111121 23334444422 3567789999999999999999999999999999999
Q ss_pred CCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC
Q 002209 793 AYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (953)
Q Consensus 793 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 872 (953)
.+++...... ..++..+... -...+.....=++...|+.+.+ ....+++++.|++++.+..+..|+|
T Consensus 211 s~~~~~~~~~------~~~~~~~~l~---~~~a~~~~~~~~l~~g~~~~~~----~~pNr~L~~~L~~~g~~~~yre~~G 277 (299)
T COG2382 211 SFWWTPLDTQ------PQGEVAESLK---ILHAIGTDERIVLTTGGEEGDF----LRPNRALAAQLEKKGIPYYYREYPG 277 (299)
T ss_pred ccccCccccc------cccchhhhhh---hhhccCccceEEeecCCccccc----cchhHHHHHHHHhcCCcceeeecCC
Confidence 8765432211 0011111111 1111122223233333444443 4567899999999999999999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 873 ESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 873 ~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
||.+. .+...+.++|...+
T Consensus 278 -gHdw~------~Wr~~l~~~L~~l~ 296 (299)
T COG2382 278 -GHDWA------WWRPALAEGLQLLL 296 (299)
T ss_pred -CCchh------HhHHHHHHHHHHhh
Confidence 99874 23344555555443
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-08 Score=131.92 Aligned_cols=199 Identities=15% Similarity=0.208 Sum_probs=119.8
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh----------hhHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND----------RFVEQL 739 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~----------~~~~~~ 739 (953)
.|+||++||..... ..| ......| ..+|.|+.+| .+|+|.+.... ...+..
T Consensus 1371 ~~~vVllHG~~~s~-----------~~w----~~~~~~L-~~~~rVi~~D---l~G~G~S~~~~~~~~~~~~~~~si~~~ 1431 (1655)
T PLN02980 1371 GSVVLFLHGFLGTG-----------EDW----IPIMKAI-SGSARCISID---LPGHGGSKIQNHAKETQTEPTLSVELV 1431 (1655)
T ss_pred CCeEEEECCCCCCH-----------HHH----HHHHHHH-hCCCEEEEEc---CCCCCCCCCccccccccccccCCHHHH
Confidence 57899999953111 111 1122233 4579999954 56777663321 113344
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC------------------Cc
Q 002209 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT------------------PF 801 (953)
Q Consensus 740 ~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~------------------~~ 801 (953)
.+++.+.++.+ +.+++.|+||||||.+++.++.++|++++++|++++....... ..
T Consensus 1432 a~~l~~ll~~l------~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~ 1505 (1655)
T PLN02980 1432 ADLLYKLIEHI------TPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDH 1505 (1655)
T ss_pred HHHHHHHHHHh------CCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhh
Confidence 44444444332 3468999999999999999999999999999988753211000 00
Q ss_pred Cccc-----ccchhhh-------------------hH----HHHHhc------CcccccCCCCCcEEEEEeCCCCCCCCc
Q 002209 802 GFQN-----EDRTLWE-------------------AT----STYVEM------SPFMSANKLKKPILLVHGEEDNNSGTL 847 (953)
Q Consensus 802 ~~~~-----~~~~~~~-------------------~~----~~~~~~------sp~~~~~~i~~P~Li~~G~~D~~v~~~ 847 (953)
+... .....|. +. ..+... +....+.++++|+|+++|++|..+
T Consensus 1506 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~--- 1582 (1655)
T PLN02980 1506 GLEIFLENWYSGELWKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKF--- 1582 (1655)
T ss_pred hHHHHHHHhccHHHhhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCcc---
Confidence 0000 0000000 00 000000 011235678899999999999865
Q ss_pred hHHHHHHHHHHHhCC--------CcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 848 TMQSDRFFNALKGHG--------ALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 848 ~~~~~~~~~~l~~~g--------~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
+..+.++.+.+.... ..++++++|++||... .++...+.+.+.+||.+.
T Consensus 1583 ~~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~-lE~Pe~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1583 KQIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVH-LENPLPVIRALRKFLTRL 1639 (1655)
T ss_pred HHHHHHHHHHccccccccccccccceEEEEECCCCCchH-HHCHHHHHHHHHHHHHhc
Confidence 356677776665420 1268999999999874 677788889999999874
|
|
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.1e-09 Score=110.09 Aligned_cols=145 Identities=20% Similarity=0.206 Sum_probs=100.7
Q ss_pred HcCCCCC--CcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC---------CCCcCcccccchhhhhHH-HHHh
Q 002209 752 RRGVAHP--SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT---------LTPFGFQNEDRTLWEATS-TYVE 819 (953)
Q Consensus 752 ~~~~~d~--~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~---------~~~~~~~~~~~~~~~~~~-~~~~ 819 (953)
+...++. ++.+|+||||||+-|+.+|+++|++|+.+.+.+|+++.. ...++-.......-+... .+.+
T Consensus 143 ~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~~~~~G~~~~~~w~~ 222 (316)
T COG0627 143 AAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFNAMLGPDSDPAWQE 222 (316)
T ss_pred HhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccHHHhcCCCccccccc
Confidence 3334454 389999999999999999999999999999999998865 222222111111111111 3344
Q ss_pred cCcccccCC--------------CCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHH
Q 002209 820 MSPFMSANK--------------LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH 885 (953)
Q Consensus 820 ~sp~~~~~~--------------i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~ 885 (953)
++|...+.+ ...++++-+|..|..........+.+.++++..|.+..+..+++..|.+. ....
T Consensus 223 ~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~G~Hsw~---~w~~ 299 (316)
T COG0627 223 NDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVRDQPGGDHSWY---FWAS 299 (316)
T ss_pred cCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceeeeCCCCCcCHH---HHHH
Confidence 455444432 44678888999997642002236889999999999999999988899873 3566
Q ss_pred HHHHHHHHHHHhcc
Q 002209 886 VLWETDRWLQKYCV 899 (953)
Q Consensus 886 ~~~~i~~fl~~~l~ 899 (953)
.++.++.|+.+.++
T Consensus 300 ~l~~~~~~~a~~l~ 313 (316)
T COG0627 300 QLADHLPWLAGALG 313 (316)
T ss_pred HHHHHHHHHHHHhc
Confidence 78888999988775
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-07 Score=108.08 Aligned_cols=271 Identities=17% Similarity=0.079 Sum_probs=153.7
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
.....+||||++|||..+.+ +++...|+++|+++|+...-. ..... ...+.|++||+.|+|+.........
T Consensus 126 ~~~~~~Spdg~~la~~~s~~----G~e~~~l~v~Dl~tg~~l~d~-i~~~~----~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDG----GSEWYTLRVFDLETGKFLPDG-IENPK----FSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEEETTTSSEEEEEEEET----TSSEEEEEEEETTTTEEEEEE-EEEEE----SEEEEECTTSSEEEEEECSTTTSS-
T ss_pred eeeeeECCCCCEEEEEecCC----CCceEEEEEEECCCCcCcCCc-ccccc----cceEEEeCCCCEEEEEEeCcccccc
Confidence 34578999999999988754 777899999999998653211 01110 2249999999999988322211100
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce--eEeCCC---Cc-ccccccCCCC
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV--KEIGPP---AV-YTSLDPSPDE 343 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~--~~l~~~---~~-~~~~~~SpDG 343 (953)
.-....++|+..+ ++.. ..|.+. .. ...+..|+||
T Consensus 197 --------------------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~ 238 (414)
T PF02897_consen 197 --------------------------------------DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDG 238 (414)
T ss_dssp --------------------------------------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTS
T ss_pred --------------------------------------cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcc
Confidence 0002357888888 5533 345433 22 4578899999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCc-----eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-----FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-----~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~ 418 (953)
++|++.+..... ..++++.+++.+ ..+.+..... +.... ....|..+++.++
T Consensus 239 ~~l~i~~~~~~~---------~s~v~~~d~~~~~~~~~~~~~l~~~~~-------------~~~~~-v~~~~~~~yi~Tn 295 (414)
T PF02897_consen 239 RYLFISSSSGTS---------ESEVYLLDLDDGGSPDAKPKLLSPRED-------------GVEYY-VDHHGDRLYILTN 295 (414)
T ss_dssp SEEEEEEESSSS---------EEEEEEEECCCTTTSS-SEEEEEESSS-------------S-EEE-EEEETTEEEEEE-
T ss_pred cEEEEEEEcccc---------CCeEEEEeccccCCCcCCcEEEeCCCC-------------ceEEE-EEccCCEEEEeeC
Confidence 999988755421 148999999864 4455443211 10111 1112444555443
Q ss_pred eccCCCcccccccCCeEEEEecCCCCCCC---ce-EEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCC-CCCC
Q 002209 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEG---PE-ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG-SKDV 493 (953)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~d~~~~~g~~---~~-~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~-~~~~ 493 (953)
.. ..+..|+.+++ +... .. .+........--.++..+.+|++....+ ...+|+++++. +.
T Consensus 296 ~~---------a~~~~l~~~~l---~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~-~~~~l~v~~~~~~~-- 360 (414)
T PF02897_consen 296 DD---------APNGRLVAVDL---ADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN-GSSRLRVYDLDDGK-- 360 (414)
T ss_dssp TT----------TT-EEEEEET---TSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET-TEEEEEEEETT-TE--
T ss_pred CC---------CCCcEEEEecc---cccccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC-CccEEEEEECCCCc--
Confidence 11 34568888886 2222 22 3444443323334556677888776655 34789999998 42
Q ss_pred CcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEec
Q 002209 494 APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~ 569 (953)
....+.-.....+.+ +...+++..+.|...+. . ..+.+|.+|+++++.+.+..
T Consensus 361 ~~~~~~~p~~g~v~~------~~~~~~~~~~~~~~ss~--------------~---~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 361 ESREIPLPEAGSVSG------VSGDFDSDELRFSYSSF--------------T---TPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EEEEEESSSSSEEEE------EES-TT-SEEEEEEEET--------------T---EEEEEEEEETTTTCEEEEEE
T ss_pred EEeeecCCcceEEec------cCCCCCCCEEEEEEeCC--------------C---CCCEEEEEECCCCCEEEEEe
Confidence 223333222222221 34456777777776432 2 23459999999999887753
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.9e-08 Score=102.72 Aligned_cols=251 Identities=14% Similarity=0.088 Sum_probs=139.2
Q ss_pred ecCCCCCCcceeeeeceEEEEccCCCC-CCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECC
Q 002209 149 IDGKCNTRSRMSFYTGIGIHQLFPDGK-LGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD 227 (953)
Q Consensus 149 ~~~~~~~~~~~~~~~~i~i~~~~~~g~-~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~ 227 (953)
+++.+......+++..+..||+..=.. ....++|.. .+...+...+|||.|.+|+.+.. ..+.-++|-+
T Consensus 175 ~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P-~E~h~i~sl~ys~Tg~~iLvvsg---------~aqakl~DRd 244 (641)
T KOG0772|consen 175 VDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP-CETHQINSLQYSVTGDQILVVSG---------SAQAKLLDRD 244 (641)
T ss_pred ecCCCceeeeccccceEEEEecccccccchhhhccCc-ccccccceeeecCCCCeEEEEec---------CcceeEEccC
Confidence 444444444444445788999832111 112234421 13337899999999999999763 5566777766
Q ss_pred CCceeecccCCC--------ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhc
Q 002209 228 TGKARPLFQSPD--------IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLL 299 (953)
Q Consensus 228 ~g~~~~lt~~~~--------~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (953)
|-+......+.. .++.+.+....|.|+.+-.|.+..
T Consensus 245 G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s------------------------------------ 288 (641)
T KOG0772|consen 245 GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS------------------------------------ 288 (641)
T ss_pred CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec------------------------------------
Confidence 655433322211 112222446679999987776521
Q ss_pred CCcchhhhhhhhccceEEEEEcCC-ceeEeC---C-C--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEe
Q 002209 300 KDEYDEDLFDYYATTQLVLVSLDG-TVKEIG---P-P--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWT 372 (953)
Q Consensus 300 ~~~~d~~~~~~~~~~~l~~~~~~g-~~~~l~---~-~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d 372 (953)
.| ++-.||-++-.. ..+.+- . + -.++..+|+|||++||....++ .|.+|+
T Consensus 289 ---~D-------gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG-------------SIQ~W~ 345 (641)
T KOG0772|consen 289 ---YD-------GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG-------------SIQIWD 345 (641)
T ss_pred ---CC-------CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC-------------ceeeee
Confidence 11 233444443322 122111 1 1 3467889999999998777443 899999
Q ss_pred ccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE-
Q 002209 373 TDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL- 451 (953)
Q Consensus 373 ~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l- 451 (953)
..+...+......... .+ ...+..++||+||+.|+-- +..+.+-+||++ +-.++...
T Consensus 346 ~~~~~v~p~~~vk~AH-~~------g~~Itsi~FS~dg~~LlSR-------------g~D~tLKvWDLr--q~kkpL~~~ 403 (641)
T KOG0772|consen 346 KGSRTVRPVMKVKDAH-LP------GQDITSISFSYDGNYLLSR-------------GFDDTLKVWDLR--QFKKPLNVR 403 (641)
T ss_pred cCCcccccceEeeecc-CC------CCceeEEEeccccchhhhc-------------cCCCceeeeecc--ccccchhhh
Confidence 8533222211110000 00 0245789999999977654 556788899972 11221111
Q ss_pred eec--ccccCCeeeccCCceEEEEEecc--cCceEEEEEcCCC
Q 002209 452 HKL--DLRYGGISWCDDSLALVYESWYK--TRRTRTWVISPGS 490 (953)
Q Consensus 452 ~~~--~~~~~~~~~SpDg~~l~~~~~~~--~~~~~l~~~d~~~ 490 (953)
+.. ...-....||||.+.|+...... .....|+.++..+
T Consensus 404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 111 22234578999999888765321 1223688888665
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-07 Score=100.30 Aligned_cols=267 Identities=15% Similarity=0.191 Sum_probs=145.3
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCC-
Q 002209 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP- 186 (953)
Q Consensus 108 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~- 186 (953)
....+.+.+|||+++|..+... .... +.|..+.+..+. +..+.+...+
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~-----------------------~~~~------g~v~~~~i~~~~--g~L~~~~~~~~ 84 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEG-----------------------SGDS------GGVSSYRIDPDT--GTLTLLNSVPS 84 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETT-----------------------SSTT------TEEEEEEEETTT--TEEEEEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEcc-----------------------ccCC------CCEEEEEECCCc--ceeEEeeeecc
Confidence 3356688999999887666552 0011 244555554441 2222222222
Q ss_pred CCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC-Cceeec---ccC----CC--ccccccccceEEecCCe
Q 002209 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPL---FQS----PD--IYLNAIFDNFVWVNNST 256 (953)
Q Consensus 187 ~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~-g~~~~l---t~~----~~--~~~~~~~~~~~wspDg~ 256 (953)
.+....+...+|||++|+.+.- . ...+.+++++. |..... ... +. .........+.++|||+
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany------~--~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANY------G--GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEET------T--TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred CCCCcEEEEEecCCCEEEEEEc------c--CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 3345677899999998877542 2 44555555543 443332 111 00 00011134788999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC--ceeE-----e
Q 002209 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--TVKE-----I 328 (953)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g--~~~~-----l 328 (953)
++++.. .+...|+++++ .+ +... +
T Consensus 157 ~v~v~d------------------------------------------------lG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 157 FVYVPD------------------------------------------------LGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp EEEEEE------------------------------------------------TTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred EEEEEe------------------------------------------------cCCCEEEEEEEeCCCceEEEeecccc
Confidence 998761 03456777777 32 2322 2
Q ss_pred CCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc--CceEEEeccCCCcccCCccccccccCccceee
Q 002209 329 GPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINW 406 (953)
Q Consensus 329 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~w 406 (953)
..+.+.+.+.|+|||+++++... ....|.+++++ .+..+.+...+.. |..+.+. .....+++
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e------------~s~~v~v~~~~~~~g~~~~~~~~~~~---~~~~~~~-~~~~~i~i 252 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNE------------LSNTVSVFDYDPSDGSLTEIQTISTL---PEGFTGE-NAPAEIAI 252 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEET------------TTTEEEEEEEETTTTEEEEEEEEESC---ETTSCSS-SSEEEEEE
T ss_pred ccCCCCcEEEEcCCcCEEEEecC------------CCCcEEEEeecccCCceeEEEEeeec---ccccccc-CCceeEEE
Confidence 23367788999999998877752 23478888777 5554444332211 1111111 13456899
Q ss_pred ccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee--c-ccccCCeeeccCCceEEEEEecccCceEE
Q 002209 407 RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--L-DLRYGGISWCDDSLALVYESWYKTRRTRT 483 (953)
Q Consensus 407 spDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~--~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~l 483 (953)
||||+.++.. ++ ..+.|.++++++ .++..+.+.. . ......+.++|||++|+.+... .....+
T Consensus 253 spdg~~lyvs-nr-----------~~~sI~vf~~d~-~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~-s~~v~v 318 (345)
T PF10282_consen 253 SPDGRFLYVS-NR-----------GSNSISVFDLDP-ATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD-SNTVSV 318 (345)
T ss_dssp -TTSSEEEEE-EC-----------TTTEEEEEEECT-TTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT-TTEEEE
T ss_pred ecCCCEEEEE-ec-----------cCCEEEEEEEec-CCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCeEEE
Confidence 9999865443 22 245677777522 3345554422 1 2224678999999998887543 343567
Q ss_pred EEEcCCCC
Q 002209 484 WVISPGSK 491 (953)
Q Consensus 484 ~~~d~~~~ 491 (953)
|.+|.++|
T Consensus 319 f~~d~~tG 326 (345)
T PF10282_consen 319 FDIDPDTG 326 (345)
T ss_dssp EEEETTTT
T ss_pred EEEeCCCC
Confidence 77777775
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-07 Score=94.65 Aligned_cols=195 Identities=13% Similarity=0.079 Sum_probs=110.3
Q ss_pred cccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCce
Q 002209 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (953)
Q Consensus 335 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~ 414 (953)
.++-..-.+++|+..+.+. +|.+|++.|.....+...... ....+.||||+.|+
T Consensus 191 i~iGiA~~~k~imsas~dt-------------~i~lw~lkGq~L~~idtnq~~-------------n~~aavSP~GRFia 244 (420)
T KOG2096|consen 191 INIGIAGNAKYIMSASLDT-------------KICLWDLKGQLLQSIDTNQSS-------------NYDAAVSPDGRFIA 244 (420)
T ss_pred EEEeecCCceEEEEecCCC-------------cEEEEecCCceeeeecccccc-------------ccceeeCCCCcEEE
Confidence 3455566788888777554 899999998776666553322 13567999999777
Q ss_pred EEEEeccCCCcccccccCCeEEEEecCCCCCCCc------eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP------EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~------~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
.. .-...+.+|...-...|+. -.|..+...+..++||+++++++..+.++ ..+||-.|.
T Consensus 245 ~~-------------gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG--~wriwdtdV 309 (420)
T KOG2096|consen 245 VS-------------GFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG--KWRIWDTDV 309 (420)
T ss_pred Ee-------------cCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC--cEEEeeccc
Confidence 65 1122233333100111222 22455566677899999999999887654 358988776
Q ss_pred CCCC-CCcEEeecCCCccccCCCCCC-CeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEE
Q 002209 489 GSKD-VAPRILFDRSSEDVYSDPGSP-MMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566 (953)
Q Consensus 489 ~~~~-~~~~~~~~~~~~~~~~~~~~p-~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~ 566 (953)
.-.. ..+..+-..+...-. ..++| .+..||.|+.|+..... .|.++...+|+...
T Consensus 310 rY~~~qDpk~Lk~g~~pl~a-ag~~p~RL~lsP~g~~lA~s~gs----------------------~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHA-AGSEPVRLELSPSGDSLAVSFGS----------------------DLKVFASEDGKDYP 366 (420)
T ss_pred eEecCCCchHhhcCCcchhh-cCCCceEEEeCCCCcEEEeecCC----------------------ceEEEEcccCccch
Confidence 4321 123333222111000 01222 27789999998877621 27777776665432
Q ss_pred EeccCcccceeeeEeeccCCccccccccCCEEEEEEe
Q 002209 567 IWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKE 603 (953)
Q Consensus 567 l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (953)
-...--. +... ..+|++||++++....
T Consensus 367 ~~e~~h~---~~Is-------~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 367 ELEDIHS---TTIS-------SISYSSDGKYIATCGD 393 (420)
T ss_pred hHHHhhc---Ccee-------eEEecCCCcEEeeecc
Confidence 2111100 0111 2578999998875433
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.6e-07 Score=91.29 Aligned_cols=290 Identities=13% Similarity=0.097 Sum_probs=165.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++++|+-.++|....+ .. -+||++.+ | ...-.++++. .
T Consensus 66 svFavsl~P~~~l~aTGGgD-------------------------D~--------AflW~~~~-g--e~~~eltgHK--D 107 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGD-------------------------DL--------AFLWDIST-G--EFAGELTGHK--D 107 (399)
T ss_pred ceEEEEeCCCCceEEecCCC-------------------------ce--------EEEEEccC-C--cceeEecCCC--C
Confidence 56678889977777665543 22 38999853 3 2344555544 3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....||-||..||. ++-...|.++...+|..+.....+... +.-+.|.|-+.+|++..
T Consensus 108 SVt~~~FshdgtlLAT---------GdmsG~v~v~~~stg~~~~~~~~e~~d----ieWl~WHp~a~illAG~------- 167 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLAT---------GDMSGKVLVFKVSTGGEQWKLDQEVED----IEWLKWHPRAHILLAGS------- 167 (399)
T ss_pred ceEEEEEccCceEEEe---------cCCCccEEEEEcccCceEEEeecccCc----eEEEEecccccEEEeec-------
Confidence 6999999999999987 444556777777666554333222221 66788999888888661
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C-CceeEeCCC-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D-GTVKEIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~-g~~~~l~~~-~~~~~~~~SpDG~~l 346 (953)
..+.+|.+.+ + +..+.+..+ ...+.-.|.||||+|
T Consensus 168 ------------------------------------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~ 205 (399)
T KOG0296|consen 168 ------------------------------------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRI 205 (399)
T ss_pred ------------------------------------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceE
Confidence 3357888888 6 444545444 667777899999999
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCcccccc----ccC--ccceeeccCCCCceEEEEe
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSV----RKG--MRSINWRSDKPSTLYWAET 419 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~----~~~--~~~~~wspDg~~i~~~~~~ 419 (953)
+....+. .|.+|+..++.+ -.++........+..++.. ..+ -..+.+...+..-+.....
T Consensus 206 ~tgy~dg-------------ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 206 LTGYDDG-------------TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred EEEecCc-------------eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecC
Confidence 9887443 899999986543 3344221111111111100 000 0011111111111111000
Q ss_pred ---------ccCCCcc-------------cccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecc
Q 002209 420 ---------QDGGDAK-------------VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 420 ---------~~~~~~~-------------~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
.+..... .-.+-.+.|.+||+ ...+.|.+-.++..+..+.|-+ ..+|+.+.-..
T Consensus 273 ~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~---a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g 348 (399)
T KOG0296|consen 273 GTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL---AASTLRHICEHEDGVTKLKWLN-TDYLLTACANG 348 (399)
T ss_pred CCCccccccchhhhhhhhhcccccccchhhcccccceEEEEec---ccchhheeccCCCceEEEEEcC-cchheeeccCc
Confidence 0000000 01122457888885 4455566656666678889988 56666554322
Q ss_pred cCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 478 TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 478 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.++.+|..+| ..+.....+...++. ++.+||++.++..+
T Consensus 349 ----~v~~wDaRtG--~l~~~y~GH~~~Il~------f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 349 ----KVRQWDARTG--QLKFTYTGHQMGILD------FALSPQKRLVVTVS 387 (399)
T ss_pred ----eEEeeecccc--ceEEEEecCchheeE------EEEcCCCcEEEEec
Confidence 5777787775 334444444444444 77899998887765
|
|
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-09 Score=100.80 Aligned_cols=172 Identities=20% Similarity=0.223 Sum_probs=109.1
Q ss_pred CcEEEEcCCCCCCCCCChhhhhh-h-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEE
Q 002209 712 GFAILGGPTTPIIGEGDEEANDR-F-VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (953)
Q Consensus 712 G~~V~~~~~~~~~G~G~~~~~~~-~-~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (953)
-+.|++ .|-.|||.|-.++. + .+-...|...+++.+.... -+++.|+|+|-||..|+.+|+++++.+...|.
T Consensus 71 ~~Tiva---wDPpGYG~SrPP~Rkf~~~ff~~Da~~avdLM~aLk---~~~fsvlGWSdGgiTalivAak~~e~v~rmii 144 (277)
T KOG2984|consen 71 QVTIVA---WDPPGYGTSRPPERKFEVQFFMKDAEYAVDLMEALK---LEPFSVLGWSDGGITALIVAAKGKEKVNRMII 144 (277)
T ss_pred ceEEEE---ECCCCCCCCCCCcccchHHHHHHhHHHHHHHHHHhC---CCCeeEeeecCCCeEEEEeeccChhhhhhhee
Confidence 488888 45578888855432 2 3344678888888887764 57999999999999999999999987766666
Q ss_pred cccCCCCCCC-CcC---------ccccc-------------chhhhh----HHHHHhcCc----ccccCCCCCcEEEEEe
Q 002209 790 RSGAYNRTLT-PFG---------FQNED-------------RTLWEA----TSTYVEMSP----FMSANKLKKPILLVHG 838 (953)
Q Consensus 790 ~~~~~d~~~~-~~~---------~~~~~-------------~~~~~~----~~~~~~~sp----~~~~~~i~~P~Li~~G 838 (953)
..+..-.... ... +.... ...|+. ...+...-- ...+.++++|+||+||
T Consensus 145 wga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG 224 (277)
T KOG2984|consen 145 WGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHG 224 (277)
T ss_pred ecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEeeC
Confidence 5542110000 000 00011 111211 011111100 1235678999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
..|+.|+ -.+.- +...++.. .++.++|.++|.+. -...+++...+.+||+.
T Consensus 225 ~kDp~~~--~~hv~-fi~~~~~~---a~~~~~peGkHn~h-Lrya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 225 GKDPFCG--DPHVC-FIPVLKSL---AKVEIHPEGKHNFH-LRYAKEFNKLVLDFLKS 275 (277)
T ss_pred CcCCCCC--CCCcc-chhhhccc---ceEEEccCCCccee-eechHHHHHHHHHHHhc
Confidence 9999997 44443 33333332 48889999999985 44556777888888864
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.1e-09 Score=104.56 Aligned_cols=216 Identities=19% Similarity=0.235 Sum_probs=133.0
Q ss_pred ceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002209 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (953)
Q Consensus 193 ~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 272 (953)
.-.|||+|++||... +.+|.+.|.++-+..+|...-+. +.-+.|+.|.-.|.+..
T Consensus 13 ~c~fSp~g~yiAs~~----------~yrlviRd~~tlq~~qlf~cldk-----i~yieW~ads~~ilC~~---------- 67 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS----------RYRLVIRDSETLQLHQLFLCLDK-----IVYIEWKADSCHILCVA---------- 67 (447)
T ss_pred ceeECCCCCeeeeee----------eeEEEEeccchhhHHHHHHHHHH-----hhheeeeccceeeeeee----------
Confidence 468999999999976 45889999888777666543222 55788999998888761
Q ss_pred CCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCC-CcccccccCCCCcEEEEE
Q 002209 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYILIS 349 (953)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDG~~l~~~ 349 (953)
|....+.++++ .-+ .-.|.++ ++.....|||||++|+.+
T Consensus 68 --------------------------------------yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~t 109 (447)
T KOG4497|consen 68 --------------------------------------YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLT 109 (447)
T ss_pred --------------------------------------eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeee
Confidence 12234555565 222 2344455 788899999999999988
Q ss_pred EecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccc
Q 002209 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEV 429 (953)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~ 429 (953)
+ +|.-.|.+|.+.+.....+.... .+...++|.|||+..+.... .|-.++
T Consensus 110 s------------eF~lriTVWSL~t~~~~~~~~pK-------------~~~kg~~f~~dg~f~ai~sR-rDCkdy---- 159 (447)
T KOG4497|consen 110 S------------EFDLRITVWSLNTQKGYLLPHPK-------------TNVKGYAFHPDGQFCAILSR-RDCKDY---- 159 (447)
T ss_pred e------------cceeEEEEEEeccceeEEecccc-------------cCceeEEECCCCceeeeeec-ccHHHH----
Confidence 7 34558999999876655544322 34467899999996665522 222211
Q ss_pred ccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCC
Q 002209 430 TPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSD 509 (953)
Q Consensus 430 ~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 509 (953)
-+|..... =.-.+...-...+..++.|||||..|+.-.+ --...+|.+.-..| ..+
T Consensus 160 ---v~i~~c~~----W~ll~~f~~dT~DltgieWsPdg~~laVwd~--~Leykv~aYe~~lG-----~k~---------- 215 (447)
T KOG4497|consen 160 ---VQISSCKA----WILLKEFKLDTIDLTGIEWSPDGNWLAVWDN--VLEYKVYAYERGLG-----LKF---------- 215 (447)
T ss_pred ---HHHHhhHH----HHHHHhcCCCcccccCceECCCCcEEEEecc--hhhheeeeeeeccc-----eeE----------
Confidence 01110000 0000001112234567899999999886432 22335665554333 001
Q ss_pred CCCCCeEeccCCCEEEEEeee
Q 002209 510 PGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 510 ~~~p~~~~SpDG~~l~~~~~~ 530 (953)
+.|||-|++|+..+.+
T Consensus 216 -----v~wsP~~qflavGsyD 231 (447)
T KOG4497|consen 216 -----VEWSPCNQFLAVGSYD 231 (447)
T ss_pred -----EEeccccceEEeeccc
Confidence 6788888888877654
|
|
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=98.93 E-value=9e-09 Score=105.99 Aligned_cols=185 Identities=16% Similarity=0.116 Sum_probs=75.4
Q ss_pred hHHHHHHHcCcEEEEcCCCC-CCCCCChhhhhhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEEeChHHHHHHHHHHh
Q 002209 703 TSVLLWLARGFAILGGPTTP-IIGEGDEEANDRFVEQLVACAEAAVEEVVRRG--VAHPSKIAVGGHSYGAFMTANLLAH 779 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~-~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (953)
..+..|...||.|+.+.... +.|+|.+ ...+.++|+.++++||+... .-..++|.|+|||-|-.-++.++.+
T Consensus 54 ~La~aL~~~~wsl~q~~LsSSy~G~G~~-----SL~~D~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~ 128 (303)
T PF08538_consen 54 DLAEALEETGWSLFQVQLSSSYSGWGTS-----SLDRDVEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSS 128 (303)
T ss_dssp HHHHHHT-TT-EEEEE--GGGBTTS-S-------HHHHHHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH
T ss_pred HHHHHhccCCeEEEEEEecCccCCcCcc-----hhhhHHHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhc
Confidence 34455556799999865543 4566654 35778999999999998873 1246799999999999999999986
Q ss_pred CC-----CcccEEEEcccCCCCCCCCcCccc-c-cc-------------------------hhh-----hhH--------
Q 002209 780 AP-----HLFCCGIARSGAYNRTLTPFGFQN-E-DR-------------------------TLW-----EAT-------- 814 (953)
Q Consensus 780 ~p-----~~~~a~v~~~~~~d~~~~~~~~~~-~-~~-------------------------~~~-----~~~-------- 814 (953)
.. ..+.++|+.+|++|++........ . .. ..+ ...
T Consensus 129 ~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~lp~~~~~~~~~~~PiTA~Rf~SL~s~ 208 (303)
T PF08538_consen 129 PNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEILPREFTPLVFYDTPITAYRFLSLASP 208 (303)
T ss_dssp -TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG----GGTTT-SS---HHHHHT-S-S
T ss_pred cCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCceeeccccccccCCCcccHHHHHhccCC
Confidence 53 469999999999997665433211 0 00 000 000
Q ss_pred ---HHHHhc-----CcccccCCCCCcEEEEEeCCCCCCCCchHH-HHHHHHHHHhCCC----cEEEEEeCCCCccCCCcc
Q 002209 815 ---STYVEM-----SPFMSANKLKKPILLVHGEEDNNSGTLTMQ-SDRFFNALKGHGA----LCRLVILPFESHGYAARE 881 (953)
Q Consensus 815 ---~~~~~~-----sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~-~~~~~~~l~~~g~----~~~~~~~~~~~H~~~~~~ 881 (953)
+.|... .......++..|+|++.+.+|+.|| ... -.++.+.++..-. ...-.++||++|.+....
T Consensus 209 ~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP--~~vdk~~Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~~ 286 (303)
T PF08538_consen 209 GGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVP--PWVDKEALLERWKAATNPKIWSPLSGIIPGASHNVSGPS 286 (303)
T ss_dssp SHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT--------------------------------------------
T ss_pred CCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceec--ccccccccccccccccccccccccccccccccccccccc
Confidence 000000 0012345678899999999999997 433 3455566654322 223458999999986443
Q ss_pred cH---HHHHHHHHHHH
Q 002209 882 SI---MHVLWETDRWL 894 (953)
Q Consensus 882 ~~---~~~~~~i~~fl 894 (953)
.. +.+.+++..||
T Consensus 287 ~~~~~~~l~~rV~~fl 302 (303)
T PF08538_consen 287 QAEAREWLVERVVKFL 302 (303)
T ss_dssp ----------------
T ss_pred cccccccccccccccC
Confidence 32 24555555554
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.7e-08 Score=112.34 Aligned_cols=104 Identities=18% Similarity=0.165 Sum_probs=72.7
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+....||||+.+|+-.+- ...|.+++..+.+...++...... +..+.|-|=|++|+..+.
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~---------DnsViiwn~~tF~~~~vl~~H~s~----VKGvs~DP~Gky~ASqsd----- 191 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSL---------DNSVIIWNAKTFELLKVLRGHQSL----VKGVSWDPIGKYFASQSD----- 191 (942)
T ss_pred CccceeccCCCccEEEEecc---------cceEEEEccccceeeeeeeccccc----ccceEECCccCeeeeecC-----
Confidence 47899999999999988653 567888888887655555444432 778999999999996511
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-------CcccccccCC
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-------AVYTSLDPSP 341 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-------~~~~~~~~Sp 341 (953)
| ..-.+|+.+--|-.+.++.+ ..+..+.|||
T Consensus 192 -----------------------------------D-------rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 192 -----------------------------------D-------RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP 229 (942)
T ss_pred -----------------------------------C-------ceEEEEEcccceeeEeeccchhhCCCcceeeecccCC
Confidence 1 22334443224556666554 3567899999
Q ss_pred CCcEEEEEEec
Q 002209 342 DEKYILISSIH 352 (953)
Q Consensus 342 DG~~l~~~~~~ 352 (953)
||++|+....-
T Consensus 230 DG~~las~nA~ 240 (942)
T KOG0973|consen 230 DGHHLASPNAV 240 (942)
T ss_pred CcCeecchhhc
Confidence 99999977543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-07 Score=103.95 Aligned_cols=305 Identities=15% Similarity=0.104 Sum_probs=144.3
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002209 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (953)
Q Consensus 113 ~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~ 192 (953)
.+.|||||+++.....+ +.|.++|+.+ .+ .+.....+....
T Consensus 41 ~~~~s~Dgr~~yv~~rd---------------------------------g~vsviD~~~----~~--~v~~i~~G~~~~ 81 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRD---------------------------------GTVSVIDLAT----GK--VVATIKVGGNPR 81 (369)
T ss_dssp EEE-TT-SSEEEEEETT---------------------------------SEEEEEETTS----SS--EEEEEE-SSEEE
T ss_pred EEEecCCCCEEEEEcCC---------------------------------CeEEEEECCc----cc--EEEEEecCCCcc
Confidence 35689999997776543 2568999843 22 232233455678
Q ss_pred ceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc---ccccccceEEecCCeEEEEEecCCCCCC
Q 002209 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY---LNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 193 ~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
..++||||++|+.... ...++-++|.++.+..+........ ....+..+.-+|++..+++..
T Consensus 82 ~i~~s~DG~~~~v~n~--------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l------- 146 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANY--------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL------- 146 (369)
T ss_dssp EEEE--TTTEEEEEEE--------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE-------
T ss_pred eEEEcCCCCEEEEEec--------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE-------
Confidence 8999999999876543 2568999999887765432221100 000122344456665444431
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc---eeEeCCCCcccccccCCCCcE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPPAVYTSLDPSPDEKY 345 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~---~~~l~~~~~~~~~~~SpDG~~ 345 (953)
-...+||.+|. +.+ .+.+..........|+|||++
T Consensus 147 -----------------------------------------kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 147 -----------------------------------------KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp -----------------------------------------TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred -----------------------------------------ccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence 03468999997 442 223322245567899999999
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccC-CCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDL-PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~-~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
++...+.. ..+-++|...+....+... ......+.. ....-...+.|+-.+........
T Consensus 186 ~~va~~~s------------n~i~viD~~~~k~v~~i~~g~~p~~~~~~--~~php~~g~vw~~~~~~~~~~~~------ 245 (369)
T PF02239_consen 186 FLVAANGS------------NKIAVIDTKTGKLVALIDTGKKPHPGPGA--NFPHPGFGPVWATSGLGYFAIPL------ 245 (369)
T ss_dssp EEEEEGGG------------TEEEEEETTTTEEEEEEE-SSSBEETTEE--EEEETTTEEEEEEEBSSSSEEEE------
T ss_pred eeeccccc------------ceeEEEeeccceEEEEeeccccccccccc--cccCCCcceEEeeccccceeccc------
Confidence 88765332 2777888876655443321 111111110 00000123445443332111100
Q ss_pred cccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCc
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 504 (953)
-+.+.+.+++. .+-...+.+.. .+.--.+..+||+++|+....-+.....+.++|..+-. ....+......
T Consensus 246 -----ig~~~v~v~d~--~~wkvv~~I~~-~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~-~~~~i~~~~~~ 316 (369)
T PF02239_consen 246 -----IGTDPVSVHDD--YAWKVVKTIPT-QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK-VVKTITPGPGK 316 (369)
T ss_dssp -----EE--TTT-STT--TBTSEEEEEE--SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE-EEE-HHHHHT-
T ss_pred -----ccCCccccchh--hcCeEEEEEEC-CCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcc-eeEEEeccCCC
Confidence 00111112221 11111222322 22224567799999998873222223479999988741 11111111110
Q ss_pred cccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEE
Q 002209 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566 (953)
Q Consensus 505 ~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~ 566 (953)
... .+.|++||+.++.+..+.+ ..|.+||.+|.+...
T Consensus 317 ~~~------h~ef~~dG~~v~vS~~~~~-------------------~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 317 RVV------HMEFNPDGKEVWVSVWDGN-------------------GAIVVYDAKTLKEKK 353 (369)
T ss_dssp -EE------EEEE-TTSSEEEEEEE--T-------------------TEEEEEETTTTEEEE
T ss_pred cEe------ccEECCCCCEEEEEEecCC-------------------CEEEEEECCCcEEEE
Confidence 011 1789999999998875431 148899988876654
|
... |
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-07 Score=99.30 Aligned_cols=246 Identities=13% Similarity=0.139 Sum_probs=137.4
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce-----eecccCCCccccccccceEEecCCeEEEEEecC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-----RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 264 (953)
.+...++-|.|-+++. +.-...+..||..|-.. ++|-..+.. .+.+++||+.|..|++.+..
T Consensus 169 ~Vsal~~Dp~GaR~~s---------Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h----~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVS---------GSLDYTVKFWDFQGMDASMRSFRQLQPCETH----QINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred EEEEeeecCCCceeee---------ccccceEEEEecccccccchhhhccCccccc----ccceeeecCCCCeEEEEecC
Confidence 7888899999999887 44567788888877532 444443332 27799999999877766211
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc---CCceeEeCCCCcccccccCC
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DGTVKEIGPPAVYTSLDPSP 341 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~---~g~~~~l~~~~~~~~~~~Sp 341 (953)
.. +++.+.++.. +.-+..+.-|+.|+ .|.. ..++..+|.|
T Consensus 236 aq------------akl~DRdG~~-------------------~~e~~KGDQYI~Dm~nTKGHi------a~lt~g~whP 278 (641)
T KOG0772|consen 236 AQ------------AKLLDRDGFE-------------------IVEFSKGDQYIRDMYNTKGHI------AELTCGCWHP 278 (641)
T ss_pred cc------------eeEEccCCce-------------------eeeeeccchhhhhhhccCCce------eeeecccccc
Confidence 11 0111111110 00011233344444 1222 3456678999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCc--eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~--~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~ 419 (953)
+.+..+.+... .+.+.+|+++.. +.+.+...+.. +.+.-+..-+|+|||+.|+-.
T Consensus 279 ~~k~~FlT~s~------------DgtlRiWdv~~~k~q~qVik~k~~~--------g~Rv~~tsC~~nrdg~~iAag--- 335 (641)
T KOG0772|consen 279 DNKEEFLTCSY------------DGTLRIWDVNNTKSQLQVIKTKPAG--------GKRVPVTSCAWNRDGKLIAAG--- 335 (641)
T ss_pred CcccceEEecC------------CCcEEEEecCCchhheeEEeeccCC--------CcccCceeeecCCCcchhhhc---
Confidence 99988887733 358999999842 22222221111 122233568999999987755
Q ss_pred ccCCCcccccccCCeEEEEecCCCCCCCceEEe--ec--ccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCc
Q 002209 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KL--DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP 495 (953)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~--~~--~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 495 (953)
-..+.|-.|+. ..-+..+.... .+ ...+.+++||+||++|+.-+.+++- ++|.+.--. ++
T Consensus 336 ----------c~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL--KvWDLrq~k---kp 399 (641)
T KOG0772|consen 336 ----------CLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL--KVWDLRQFK---KP 399 (641)
T ss_pred ----------ccCCceeeeec-CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce--eeeeccccc---cc
Confidence 22445556663 11111222221 22 2367889999999999987766643 666554322 22
Q ss_pred EEe-ecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 496 RIL-FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 496 ~~~-~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
... +..... | ++.- ..||||.+.|+....
T Consensus 400 L~~~tgL~t~--~--~~td-c~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 400 LNVRTGLPTP--F--PGTD-CCFSPDDKLILTGTS 429 (641)
T ss_pred hhhhcCCCcc--C--CCCc-cccCCCceEEEeccc
Confidence 222 211111 1 0111 579999988877653
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.3e-08 Score=111.13 Aligned_cols=178 Identities=14% Similarity=0.211 Sum_probs=112.9
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..|+.||||+++||+....+ ...++..+||+.+. +++.++++.... ...+.|+|||+.|+|.......
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~-gg~~~~lt~g~~------~t~PsWspDG~~lw~v~dg~~~-- 420 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPL-GGVAVQVLEGHS------LTRPSWSLDADAVWVVVDGNTV-- 420 (591)
T ss_pred CcccceECCCCCEEEEEEeecC-CCCCcceEEEEEeC-CCcceeeecCCC------CCCceECCCCCceEEEecCcce--
Confidence 6789999999999999986543 22346779999997 555678876543 5689999999999988321110
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCcccccccCCCCcEEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~~ 348 (953)
.+ +... .+.++||++++ .|+.+. ...+.+.++.|||||++|+|
T Consensus 421 --------------------~~-------v~~~--------~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~ 464 (591)
T PRK13616 421 --------------------VR-------VIRD--------PATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAM 464 (591)
T ss_pred --------------------EE-------Eecc--------CCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEE
Confidence 00 0000 03468999998 666655 22367999999999999999
Q ss_pred EEecCCccccccCCCCCcceEE---EeccCceEEEeccCC-CcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGV---WTTDGIFVRELCDLP-LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~---~d~~g~~~~~l~~~~-~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
... +.|++ ...++++ +.|+... ... +......++.|..|++ |+.. ..
T Consensus 465 i~~--------------g~v~Va~Vvr~~~G~-~~l~~~~~l~~-------~l~~~~~~l~W~~~~~-L~V~--~~---- 515 (591)
T PRK13616 465 IIG--------------GKVYLAVVEQTEDGQ-YALTNPREVGP-------GLGDTAVSLDWRTGDS-LVVG--RS---- 515 (591)
T ss_pred EEC--------------CEEEEEEEEeCCCCc-eeecccEEeec-------ccCCccccceEecCCE-EEEE--ec----
Confidence 972 26776 4444554 4443211 000 0111135688999998 4433 11
Q ss_pred cccccccCCeEEEEecCCCCCCCceE
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEI 450 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~ 450 (953)
+....+|.+.+ +|.....
T Consensus 516 -----~~~~~v~~v~v---DG~~~~~ 533 (591)
T PRK13616 516 -----DPEHPVWYVNL---DGSNSDA 533 (591)
T ss_pred -----CCCCceEEEec---CCccccc
Confidence 12345788876 6555443
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-08 Score=104.80 Aligned_cols=221 Identities=9% Similarity=0.022 Sum_probs=134.6
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
..|+||++-+++. -.+...+ +...+....||.+|..++.++ ....|-++|+++|+...-......
T Consensus 237 ~~vklW~vy~~~~--~lrtf~g--H~k~Vrd~~~s~~g~~fLS~s---------fD~~lKlwDtETG~~~~~f~~~~~-- 301 (503)
T KOG0282|consen 237 GLVKLWNVYDDRR--CLRTFKG--HRKPVRDASFNNCGTSFLSAS---------FDRFLKLWDTETGQVLSRFHLDKV-- 301 (503)
T ss_pred ceEEEEEEecCcc--eehhhhc--chhhhhhhhccccCCeeeeee---------cceeeeeeccccceEEEEEecCCC--
Confidence 4679999965442 2222222 223799999999999988765 367888999999987544332321
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
..-+.+.||+..++++.. ..+.|..+|+
T Consensus 302 ---~~cvkf~pd~~n~fl~G~------------------------------------------------sd~ki~~wDiR 330 (503)
T KOG0282|consen 302 ---PTCVKFHPDNQNIFLVGG------------------------------------------------SDKKIRQWDIR 330 (503)
T ss_pred ---ceeeecCCCCCcEEEEec------------------------------------------------CCCcEEEEecc
Confidence 446778899966665510 2356778888
Q ss_pred CCceeEeCC-C-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCcccccccc
Q 002209 322 DGTVKEIGP-P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (953)
Q Consensus 322 ~g~~~~l~~-~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~ 399 (953)
+|++.+-.. . +.+..+.|-++|++.+.++.+. .+.+|+......-.+...+.. .
T Consensus 331 s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk-------------s~riWe~~~~v~ik~i~~~~~-----------h 386 (503)
T KOG0282|consen 331 SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK-------------SVRIWENRIPVPIKNIADPEM-----------H 386 (503)
T ss_pred chHHHHHHHhhhhheeeeEEccCCceEeeeccCc-------------cEEEEEcCCCccchhhcchhh-----------c
Confidence 886544332 3 6778899999999999888554 788887764332221111111 1
Q ss_pred CccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCC-CCCCceEEeec--ccccCCeeeccCCceEEEEEec
Q 002209 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV-QGEGPEILHKL--DLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 400 ~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~g~~~~~l~~~--~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
....+..+|+++.++-- +-.+.++++.+.+. .-...+....+ .+..-.+.|||||++|++...+
T Consensus 387 smP~~~~~P~~~~~~aQ-------------s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd 453 (503)
T KOG0282|consen 387 TMPCLTLHPNGKWFAAQ-------------SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD 453 (503)
T ss_pred cCcceecCCCCCeehhh-------------ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC
Confidence 23457788888744322 33445665553111 11111222222 2233458999999999987543
Q ss_pred ccCceEEEEEcCCC
Q 002209 477 KTRRTRTWVISPGS 490 (953)
Q Consensus 477 ~~~~~~l~~~d~~~ 490 (953)
+ +++.+|..+
T Consensus 454 G----~v~~wdwkt 463 (503)
T KOG0282|consen 454 G----KVNFWDWKT 463 (503)
T ss_pred c----cEEEeechh
Confidence 3 678887766
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-07 Score=119.02 Aligned_cols=230 Identities=13% Similarity=0.132 Sum_probs=131.1
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCc-cchHHHHHHHcCcEEEEcCCCCCCCCCChh
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI-GSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~G~~V~~~~~~~~~G~G~~~ 730 (953)
+..+-|.|..-+..++...|.||++||..... ..|... .......|+++||.|+.+|. +..+. ..
T Consensus 49 ~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~-----------~~~d~~~~~s~v~~L~~~g~~v~~~d~-G~~~~--~~ 114 (994)
T PRK07868 49 YRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSA-----------DMWDVTRDDGAVGILHRAGLDPWVIDF-GSPDK--VE 114 (994)
T ss_pred EEEEEeCCCCccccccCCCCcEEEECCCCCCc-----------cceecCCcccHHHHHHHCCCEEEEEcC-CCCCh--hH
Confidence 45556666542111111247788899953211 112111 11235678899999999763 22111 00
Q ss_pred hh-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCcccEEEEcccCCCCCCC-----C--c
Q 002209 731 AN-DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTLT-----P--F 801 (953)
Q Consensus 731 ~~-~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~d~~~~-----~--~ 801 (953)
.. ...+...+..+.++++.+.+.. .+++.++||||||.+++.+++.+ +++++.+|+++...|.... + +
T Consensus 115 ~~~~~~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~ 191 (994)
T PRK07868 115 GGMERNLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGL 191 (994)
T ss_pred cCccCCHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhh
Confidence 10 1122333445566666665443 24799999999999998888754 4589998876655432100 0 0
Q ss_pred ----------------Cccc--------------------------cc-ch-------------h-h-hh--------HH
Q 002209 802 ----------------GFQN--------------------------ED-RT-------------L-W-EA--------TS 815 (953)
Q Consensus 802 ----------------~~~~--------------------------~~-~~-------------~-~-~~--------~~ 815 (953)
.... .. .. . | .. ..
T Consensus 192 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~ 271 (994)
T PRK07868 192 AAAAADFMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLK 271 (994)
T ss_pred hhcccccchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHH
Confidence 0000 00 00 0 1 00 00
Q ss_pred HHHhcCcc-----------cccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEE-EEeCCCCccC--CCcc
Q 002209 816 TYVEMSPF-----------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRL-VILPFESHGY--AARE 881 (953)
Q Consensus 816 ~~~~~sp~-----------~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~H~~--~~~~ 881 (953)
.+...+.+ ..+.+|++|+|+++|+.|.++| +..++.+.+.+... ++ .+++++||.. ....
T Consensus 272 ~~~~~n~~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp--~~~~~~l~~~i~~a----~~~~~~~~~GH~g~~~g~~ 345 (994)
T PRK07868 272 QFIAHNRMMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQ--PASVRGIRRAAPNA----EVYESLIRAGHFGLVVGSR 345 (994)
T ss_pred HHHHhCcccCceEEECCEEcchhhCCCCEEEEEeCCCCCCC--HHHHHHHHHhCCCC----eEEEEeCCCCCEeeeechh
Confidence 01100111 1356789999999999999998 88888887765432 44 5678899974 3445
Q ss_pred cHHHHHHHHHHHHHHhccCCCCC
Q 002209 882 SIMHVLWETDRWLQKYCVSNTAD 904 (953)
Q Consensus 882 ~~~~~~~~i~~fl~~~l~~~~~~ 904 (953)
....++..+.+||.++-...+.+
T Consensus 346 a~~~~wp~i~~wl~~~~~~~~~~ 368 (994)
T PRK07868 346 AAQQTWPTVADWVKWLEGDGDKP 368 (994)
T ss_pred hhhhhChHHHHHHHHhccCCCCC
Confidence 56778899999999986555443
|
|
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.6e-08 Score=109.00 Aligned_cols=88 Identities=14% Similarity=0.085 Sum_probs=61.7
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHH----HHHH
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA----NLLA 778 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~----~~a~ 778 (953)
....+|+++||.|++++. .|.|.+...........+++.++++++.+.- +.+++.++|||+||.+++ .+++
T Consensus 211 Slv~~L~~qGf~V~~iDw---rgpg~s~~~~~~ddY~~~~i~~al~~v~~~~--g~~kv~lvG~cmGGtl~a~ala~~aa 285 (532)
T TIGR01838 211 SLVRWLVEQGHTVFVISW---RNPDASQADKTFDDYIRDGVIAALEVVEAIT--GEKQVNCVGYCIGGTLLSTALAYLAA 285 (532)
T ss_pred HHHHHHHHCCcEEEEEEC---CCCCcccccCChhhhHHHHHHHHHHHHHHhc--CCCCeEEEEECcCcHHHHHHHHHHHH
Confidence 467789999999999554 4555553332233444566788888887642 457899999999999862 2344
Q ss_pred hC-CCcccEEEEcccCCC
Q 002209 779 HA-PHLFCCGIARSGAYN 795 (953)
Q Consensus 779 ~~-p~~~~a~v~~~~~~d 795 (953)
.. ++++++++.++...|
T Consensus 286 ~~~~~rv~slvll~t~~D 303 (532)
T TIGR01838 286 RGDDKRIKSATFFTTLLD 303 (532)
T ss_pred hCCCCccceEEEEecCcC
Confidence 54 678999988877655
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.9e-07 Score=100.95 Aligned_cols=169 Identities=9% Similarity=0.032 Sum_probs=97.1
Q ss_pred CcccccccCCCCc-EEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccC
Q 002209 332 AVYTSLDPSPDEK-YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 332 ~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
..+..++|+|++. .|+..+.+ +.|.+||+..+... .+..+. ..+..++|+||
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs~D-------------gtVrIWDl~tg~~~~~l~~h~-------------~~V~sla~spd 179 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAGAD-------------MVVNVWDVERGKAVEVIKCHS-------------DQITSLEWNLD 179 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEeCC-------------CEEEEEECCCCeEEEEEcCCC-------------CceEEEEEECC
Confidence 6677899999975 55544433 38999999865433 333221 34568999999
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccc-cCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLR-YGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~-~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
|+.++.. +....|.+||+ .++.....+..+... ...+.|++++..|+...........+.++|+
T Consensus 180 G~lLatg-------------s~Dg~IrIwD~--rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 180 GSLLCTT-------------SKDKKLNIIDP--RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred CCEEEEe-------------cCCCEEEEEEC--CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence 9876655 44568899996 333322333333322 3357899998887765532211124555555
Q ss_pred CCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEE
Q 002209 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (953)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l 567 (953)
... ..+....+..... ....+.|++|++.|+....+. ..|++||+.+++....
T Consensus 245 r~~-~~p~~~~~~d~~~-----~~~~~~~d~d~~~L~lggkgD--------------------g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 245 RKM-ASPYSTVDLDQSS-----ALFIPFFDEDTNLLYIGSKGE--------------------GNIRCFELMNERLTFC 297 (493)
T ss_pred CCC-CCceeEeccCCCC-----ceEEEEEcCCCCEEEEEEeCC--------------------CeEEEEEeeCCceEEE
Confidence 443 1233222211111 111145889998776654211 2488999987765544
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.9e-07 Score=90.28 Aligned_cols=264 Identities=13% Similarity=0.116 Sum_probs=153.6
Q ss_pred CchhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCC
Q 002209 98 PPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG 177 (953)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~ 177 (953)
-|.++..-++.+.....+||+-|.+||....+ +.+.|||+.+= +
T Consensus 13 ~PEel~~tld~~~a~~~~Fs~~G~~lAvGc~n---------------------------------G~vvI~D~~T~---~ 56 (405)
T KOG1273|consen 13 YPEELTHTLDNPLAECCQFSRWGDYLAVGCAN---------------------------------GRVVIYDFDTF---R 56 (405)
T ss_pred ChHhhceeccCCccceEEeccCcceeeeeccC---------------------------------CcEEEEEcccc---c
Confidence 34555556666677789999999999998875 36689998541 2
Q ss_pred ceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeE
Q 002209 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (953)
Q Consensus 178 ~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~ 257 (953)
..+.|+.+. ..+....||+||+.|+..++ ...+-++|+..|.+.+-...+. .+-.+.|.|-.+.
T Consensus 57 iar~lsaH~--~pi~sl~WS~dgr~LltsS~---------D~si~lwDl~~gs~l~rirf~s-----pv~~~q~hp~k~n 120 (405)
T KOG1273|consen 57 IARMLSAHV--RPITSLCWSRDGRKLLTSSR---------DWSIKLWDLLKGSPLKRIRFDS-----PVWGAQWHPRKRN 120 (405)
T ss_pred hhhhhhccc--cceeEEEecCCCCEeeeecC---------CceeEEEeccCCCceeEEEccC-----ccceeeeccccCC
Confidence 344554433 36899999999999998664 5677888888776533222232 2557788866544
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC--C-c
Q 002209 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--A-V 333 (953)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~-~ 333 (953)
.+++..- ...-+++++ +++.+.|... + .
T Consensus 121 ~~va~~~------------------------------------------------~~sp~vi~~s~~~h~~Lp~d~d~dl 152 (405)
T KOG1273|consen 121 KCVATIM------------------------------------------------EESPVVIDFSDPKHSVLPKDDDGDL 152 (405)
T ss_pred eEEEEEe------------------------------------------------cCCcEEEEecCCceeeccCCCcccc
Confidence 4333110 011224444 4555555433 1 1
Q ss_pred cc---ccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 334 YT---SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 334 ~~---~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
.. ...|.+-|++|+..... +.+.+++.++-+...-..... ...++.+.++-.|
T Consensus 153 n~sas~~~fdr~g~yIitGtsK-------------Gkllv~~a~t~e~vas~rits-----------~~~IK~I~~s~~g 208 (405)
T KOG1273|consen 153 NSSASHGVFDRRGKYIITGTSK-------------GKLLVYDAETLECVASFRITS-----------VQAIKQIIVSRKG 208 (405)
T ss_pred ccccccccccCCCCEEEEecCc-------------ceEEEEecchheeeeeeeech-----------heeeeEEEEeccC
Confidence 11 22478889998876533 367788877654332111100 0234677888888
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCC----CCCCceEEeec-----ccccCCeeeccCCceEEEEEecccCce
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV----QGEGPEILHKL-----DLRYGGISWCDDSLALVYESWYKTRRT 481 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~----~g~~~~~l~~~-----~~~~~~~~~SpDg~~l~~~~~~~~~~~ 481 (953)
+.+++- .....|.+++.... .+++++...+. ........||.||.+++.++. . .-
T Consensus 209 ~~liiN-------------tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~-~--aH 272 (405)
T KOG1273|consen 209 RFLIIN-------------TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA-R--AH 272 (405)
T ss_pred cEEEEe-------------cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccc-c--ce
Confidence 866654 22334556654100 12222221111 112245789999999988762 2 23
Q ss_pred EEEEEcCCCCCCCcEEeecCCC
Q 002209 482 RTWVISPGSKDVAPRILFDRSS 503 (953)
Q Consensus 482 ~l~~~d~~~~~~~~~~~~~~~~ 503 (953)
.||++....| ....+.....
T Consensus 273 aLYIWE~~~G--sLVKILhG~k 292 (405)
T KOG1273|consen 273 ALYIWEKSIG--SLVKILHGTK 292 (405)
T ss_pred eEEEEecCCc--ceeeeecCCc
Confidence 7999887775 5555555443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-06 Score=86.61 Aligned_cols=252 Identities=12% Similarity=0.095 Sum_probs=157.4
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce--eecccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
+.+....|+|||..+|. +.....|++|++.+-.. ..+..+. +.+-.+.|.+||..|+...
T Consensus 48 geI~~~~F~P~gs~~aS---------gG~Dr~I~LWnv~gdceN~~~lkgHs-----gAVM~l~~~~d~s~i~S~g---- 109 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFAS---------GGSDRAIVLWNVYGDCENFWVLKGHS-----GAVMELHGMRDGSHILSCG---- 109 (338)
T ss_pred ceEEEEEECCCCCeEee---------cCCcceEEEEeccccccceeeecccc-----ceeEeeeeccCCCEEEEec----
Confidence 37889999999998887 34577889998776433 2333222 2267899999999999762
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-CcccccccCCCC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDE 343 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDG 343 (953)
....++.+|+ +|+. ++.-.. ..+..+..+.=|
T Consensus 110 ---------------------------------------------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg 144 (338)
T KOG0265|consen 110 ---------------------------------------------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRG 144 (338)
T ss_pred ---------------------------------------------CCceEEEEecccceeeehhccccceeeecCccccC
Confidence 2245677888 7754 334333 556666667677
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
-.++.+..+ .+++.+||+..++..++.... ....++.|.-++..+.-.
T Consensus 145 ~~lv~Sgsd------------D~t~kl~D~R~k~~~~t~~~k-------------yqltAv~f~d~s~qv~sg------- 192 (338)
T KOG0265|consen 145 PQLVCSGSD------------DGTLKLWDIRKKEAIKTFENK-------------YQLTAVGFKDTSDQVISG------- 192 (338)
T ss_pred CeEEEecCC------------CceEEEEeecccchhhccccc-------------eeEEEEEecccccceeec-------
Confidence 777776643 358999999865533322111 112356777766654332
Q ss_pred CcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCC
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 503 (953)
.-.+.|-+||+ ..+.-...+..+...+.+++.||+|.++...+.+... ++|.+.+-........++....
T Consensus 193 ------gIdn~ikvWd~--r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tv--rvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 193 ------GIDNDIKVWDL--RKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTV--RVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred ------cccCceeeecc--ccCcceEEeecccCceeeEEeccCCCccccccccceE--EEEEecccCCCCceEEEeecch
Confidence 33556778885 3333334456666677889999999998877666543 6777766554222244444332
Q ss_pred ccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 504 ~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
....- ....-+|||+++.+.+.+.+. ++|+||..+....-.+
T Consensus 263 hnfek--nlL~cswsp~~~~i~ags~dr---------------------~vyvwd~~~r~~lykl 304 (338)
T KOG0265|consen 263 HNFEK--NLLKCSWSPNGTKITAGSADR---------------------FVYVWDTTSRRILYKL 304 (338)
T ss_pred hhhhh--hcceeeccCCCCccccccccc---------------------eEEEeecccccEEEEc
Confidence 21110 111157999999998887543 5999998765544333
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-06 Score=105.54 Aligned_cols=229 Identities=12% Similarity=0.151 Sum_probs=131.4
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce--e----ecccCCCccccccccceEEecC-CeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--R----PLFQSPDIYLNAIFDNFVWVNN-STLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~--~----~lt~~~~~~~~~~~~~~~wspD-g~~l~~~ 261 (953)
..+....|+|||++||... ....|.+|+...... . .+..... ...+..+.|++. +..|+.+
T Consensus 484 ~~V~~i~fs~dg~~latgg---------~D~~I~iwd~~~~~~~~~~~~~~~~~~~~---~~~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAG---------VNKKIKIFECESIIKDGRDIHYPVVELAS---RSKLSGICWNSYIKSQVASS 551 (793)
T ss_pred CcEEEEEECCCCCEEEEEe---------CCCEEEEEECCcccccccccccceEEecc---cCceeeEEeccCCCCEEEEE
Confidence 4688899999999988754 245666666543110 0 0000000 111567889864 5666654
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCC-Ccccccc
Q 002209 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLD 338 (953)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~ 338 (953)
. ..+.|.++|+ +++ ...+... ..+..++
T Consensus 552 ~-------------------------------------------------~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~ 582 (793)
T PLN00181 552 N-------------------------------------------------FEGVVQVWDVARSQLVTEMKEHEKRVWSID 582 (793)
T ss_pred e-------------------------------------------------CCCeEEEEECCCCeEEEEecCCCCCEEEEE
Confidence 1 2245667787 664 3444444 7788999
Q ss_pred cCC-CCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeec-cCCCCceE
Q 002209 339 PSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWR-SDKPSTLY 415 (953)
Q Consensus 339 ~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~ws-pDg~~i~~ 415 (953)
|+| ||..|+..+.+ +.|.+||+..+. ...+... ..+..+.|+ ++|..++.
T Consensus 583 ~~p~~~~~L~Sgs~D-------------g~v~iWd~~~~~~~~~~~~~--------------~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 583 YSSADPTLLASGSDD-------------GSVKLWSINQGVSIGTIKTK--------------ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EcCCCCCEEEEEcCC-------------CEEEEEECCCCcEEEEEecC--------------CCeEEEEEeCCCCCEEEE
Confidence 997 78888777644 389999998543 2233221 123457784 56776665
Q ss_pred EEEeccCCCcccccccCCeEEEEecCCCCCCC-ceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC--C
Q 002209 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK--D 492 (953)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~-~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~--~ 492 (953)
. +..+.|++||+ .++.. ...+..+...+..+.|+ |+..|+.++.++. .+||.+..... .
T Consensus 636 g-------------s~dg~I~iwD~--~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~--ikiWd~~~~~~~~~ 697 (793)
T PLN00181 636 G-------------SADHKVYYYDL--RNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT--LKLWDLSMSISGIN 697 (793)
T ss_pred E-------------eCCCeEEEEEC--CCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE--EEEEeCCCCccccC
Confidence 5 44668999996 22221 23344555667778897 7777777665442 35665542210 0
Q ss_pred CCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 493 VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
..+..........+. .+.|+|+|++|+....
T Consensus 698 ~~~l~~~~gh~~~i~------~v~~s~~~~~lasgs~ 728 (793)
T PLN00181 698 ETPLHSFMGHTNVKN------FVGLSVSDGYIATGSE 728 (793)
T ss_pred CcceEEEcCCCCCee------EEEEcCCCCEEEEEeC
Confidence 112222222211111 1779999998887763
|
|
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.2e-09 Score=110.17 Aligned_cols=154 Identities=19% Similarity=0.224 Sum_probs=98.3
Q ss_pred cEEEEcCCCCCCCCCChhh--hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEc
Q 002209 713 FAILGGPTTPIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (953)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~--~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (953)
|.|++ .+.+|.|.+.. ....-.....|+.+.++.+++.-.+ +++.++||||||.+++.+++.+|++++++|+.
T Consensus 1 f~vi~---~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~ 75 (230)
T PF00561_consen 1 FDVIL---FDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVLI 75 (230)
T ss_dssp EEEEE---EECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEEE
T ss_pred CEEEE---EeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEEE
Confidence 56888 45567777753 1233334466667777777665333 45999999999999999999999999999999
Q ss_pred ccCC--C----CCCCCc-Ccccc---------------------------cch---------hhh---h-----------
Q 002209 791 SGAY--N----RTLTPF-GFQNE---------------------------DRT---------LWE---A----------- 813 (953)
Q Consensus 791 ~~~~--d----~~~~~~-~~~~~---------------------------~~~---------~~~---~----------- 813 (953)
+++. . ...... .+... ... .+. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (230)
T PF00561_consen 76 SPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNMF 155 (230)
T ss_dssp SESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred eeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhhc
Confidence 8851 0 000000 00000 000 000 0
Q ss_pred ---HHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002209 814 ---TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (953)
Q Consensus 814 ---~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (953)
...+...++...+.++++|+|+++|++|..+| +....++.+.+.. .+++++++.||..
T Consensus 156 ~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p--~~~~~~~~~~~~~----~~~~~~~~~GH~~ 216 (230)
T PF00561_consen 156 WNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVP--PESSEQLAKLIPN----SQLVLIEGSGHFA 216 (230)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSH--HHHHHHHHHHSTT----EEEEEETTCCSTH
T ss_pred cccccccccccccccccccCCCeEEEEeCCCCCCC--HHHHHHHHHhcCC----CEEEECCCCChHH
Confidence 00111122234556799999999999999998 8877775544433 6899999999975
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-07 Score=99.22 Aligned_cols=217 Identities=11% Similarity=0.092 Sum_probs=145.5
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCcee---ecccCCCc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR---PLFQSPDI 240 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~---~lt~~~~~ 240 (953)
-|.|||+...|......+|..+..+..++.-..+|||+.|+. +.+...|-+||+..-..+ +|+...-.
T Consensus 441 cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLiv---------GGeastlsiWDLAapTprikaeltssapa 511 (705)
T KOG0639|consen 441 CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIV---------GGEASTLSIWDLAAPTPRIKAELTSSAPA 511 (705)
T ss_pred eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEe---------ccccceeeeeeccCCCcchhhhcCCcchh
Confidence 678999976554444455666666668899999999999998 445677778887765443 23322111
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEE
Q 002209 241 YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (953)
Q Consensus 241 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 320 (953)
-..++.|||.+..|.. ...++|.++|
T Consensus 512 -----CyALa~spDakvcFsc-------------------------------------------------csdGnI~vwD 537 (705)
T KOG0639|consen 512 -----CYALAISPDAKVCFSC-------------------------------------------------CSDGNIAVWD 537 (705)
T ss_pred -----hhhhhcCCccceeeee-------------------------------------------------ccCCcEEEEE
Confidence 2367789999876644 1335788889
Q ss_pred c-CCc-eeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCcccccc
Q 002209 321 L-DGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV 397 (953)
Q Consensus 321 ~-~g~-~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~ 397 (953)
+ +.. ++.+... ++...+.+|+||..|..... ...+.-||+..+ +++..+...
T Consensus 538 Lhnq~~VrqfqGhtDGascIdis~dGtklWTGGl-------------DntvRcWDlreg--rqlqqhdF~---------- 592 (705)
T KOG0639|consen 538 LHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL-------------DNTVRCWDLREG--RQLQQHDFS---------- 592 (705)
T ss_pred cccceeeecccCCCCCceeEEecCCCceeecCCC-------------ccceeehhhhhh--hhhhhhhhh----------
Confidence 9 664 4445444 88899999999998865543 348889999732 233332221
Q ss_pred ccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecc
Q 002209 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 398 ~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
..+.++...|.|..++.. -+.+.+++... .+.+..+|..++.-+-++.|++-|++++....++
T Consensus 593 -SQIfSLg~cP~~dWlavG-------------Mens~vevlh~---skp~kyqlhlheScVLSlKFa~cGkwfvStGkDn 655 (705)
T KOG0639|consen 593 -SQIFSLGYCPTGDWLAVG-------------MENSNVEVLHT---SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 655 (705)
T ss_pred -hhheecccCCCccceeee-------------cccCcEEEEec---CCccceeecccccEEEEEEecccCceeeecCchh
Confidence 123467788999988876 23456777764 5555667888888888899999999888765444
Q ss_pred cCceEEEEEc
Q 002209 478 TRRTRTWVIS 487 (953)
Q Consensus 478 ~~~~~l~~~d 487 (953)
- ...|+..
T Consensus 656 l--LnawrtP 663 (705)
T KOG0639|consen 656 L--LNAWRTP 663 (705)
T ss_pred h--hhhccCc
Confidence 2 2455544
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-06 Score=98.54 Aligned_cols=200 Identities=12% Similarity=0.006 Sum_probs=117.4
Q ss_pred CcccceEecc-CCCeEEEEEeeccccCCCCcceEEEEECCCCce--------eecccCCCccccccccceEEecCCe-EE
Q 002209 189 AKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--------RPLFQSPDIYLNAIFDNFVWVNNST-LL 258 (953)
Q Consensus 189 ~~~~~~~wSP-DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~--------~~lt~~~~~~~~~~~~~~~wspDg~-~l 258 (953)
..+....|+| |++.|+..+ .+..|.+|++..+.. ..+..+. ..+..+.|+|++. .|
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS---------~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~-----~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTAS---------EDGTIMGWGIPEEGLTQNISDPIVHLQGHT-----KKVGIVSFHPSAMNVL 141 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEe---------CCCEEEEEecCCCccccccCcceEEecCCC-----CcEEEEEeCcCCCCEE
Confidence 4689999999 888887754 245667777654321 1222222 1267899999874 55
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-Cccc
Q 002209 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYT 335 (953)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~ 335 (953)
+.+. ....|.++|+ +++. ..+... ..+.
T Consensus 142 aSgs-------------------------------------------------~DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 142 ASAG-------------------------------------------------ADMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred EEEe-------------------------------------------------CCCEEEEEECCCCeEEEEEcCCCCceE
Confidence 5441 2245667788 6644 334333 6788
Q ss_pred ccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCce
Q 002209 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (953)
Q Consensus 336 ~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~ 414 (953)
+++|+|||+.|+..+.+. .|.+||+..+. ...+..+... ......|.+++..++
T Consensus 173 sla~spdG~lLatgs~Dg-------------~IrIwD~rsg~~v~tl~~H~~~------------~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKDK-------------KLNIIDPRDGTIVSSVEAHASA------------KSQRCLWAKRKDLII 227 (493)
T ss_pred EEEEECCCCEEEEecCCC-------------EEEEEECCCCcEEEEEecCCCC------------cceEEEEcCCCCeEE
Confidence 999999999988877443 89999997543 3334332211 112467999887655
Q ss_pred EEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc--cccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
... .. .+....|.+||+ .+...+......+ .....+.|++|++.|+.....+ + .|..+++..
T Consensus 228 t~G-~s--------~s~Dr~VklWDl--r~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD-g--~Iriwdl~~ 291 (493)
T PTZ00421 228 TLG-CS--------KSQQRQIMLWDT--RKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGE-G--NIRCFELMN 291 (493)
T ss_pred EEe-cC--------CCCCCeEEEEeC--CCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCC-C--eEEEEEeeC
Confidence 431 00 022457889996 2222232222111 1233467999999887765433 2 344445544
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.2e-08 Score=96.97 Aligned_cols=255 Identities=11% Similarity=0.110 Sum_probs=154.7
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccce-----------------eceEEecCCCCCCcceeeeeceEEEEccCC
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEK-----------------LAGLRIDGKCNTRSRMSFYTGIGIHQLFPD 173 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 173 (953)
+....|||||++|+..+.++-.++|++.....+ .--+.|+.+.......+-++.|.||.+.+
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t- 294 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET- 294 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-
Confidence 456789999999999998877777777644322 01133444444444445557899999965
Q ss_pred CCCCce-eeee-cCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEE
Q 002209 174 GKLGQE-IEIQ-GFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW 251 (953)
Q Consensus 174 g~~~~~-~~l~-~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w 251 (953)
++. +++. .++ ..+...+||.|+.+|+-.+. ...+.+.-+.+|+..+-..+.... +....|
T Consensus 295 ---G~ClRrFdrAHt--kGvt~l~FSrD~SqiLS~sf---------D~tvRiHGlKSGK~LKEfrGHsSy----vn~a~f 356 (508)
T KOG0275|consen 295 ---GQCLRRFDRAHT--KGVTCLSFSRDNSQILSASF---------DQTVRIHGLKSGKCLKEFRGHSSY----VNEATF 356 (508)
T ss_pred ---chHHHHhhhhhc--cCeeEEEEccCcchhhcccc---------cceEEEeccccchhHHHhcCcccc----ccceEE
Confidence 332 2222 122 36899999999999997542 556777778888764443333322 668889
Q ss_pred ecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc----ee
Q 002209 252 VNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----VK 326 (953)
Q Consensus 252 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~----~~ 326 (953)
++||..|...+.+ +.+-+++. +++ .+
T Consensus 357 t~dG~~iisaSsD-------------------------------------------------gtvkvW~~KtteC~~Tfk 387 (508)
T KOG0275|consen 357 TDDGHHIISASSD-------------------------------------------------GTVKVWHGKTTECLSTFK 387 (508)
T ss_pred cCCCCeEEEecCC-------------------------------------------------ccEEEecCcchhhhhhcc
Confidence 9999988865211 12223333 321 12
Q ss_pred EeCCCCcccccccCCCC-cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCcccee
Q 002209 327 EIGPPAVYTSLDPSPDE-KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (953)
Q Consensus 327 ~l~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (953)
.+.+...+.++-.-|.. .++++ .++ .+.++++++.|.-++..+...... +..-+..
T Consensus 388 ~~~~d~~vnsv~~~PKnpeh~iV-CNr------------sntv~imn~qGQvVrsfsSGkREg----------GdFi~~~ 444 (508)
T KOG0275|consen 388 PLGTDYPVNSVILLPKNPEHFIV-CNR------------SNTVYIMNMQGQVVRSFSSGKREG----------GDFINAI 444 (508)
T ss_pred CCCCcccceeEEEcCCCCceEEE-EcC------------CCeEEEEeccceEEeeeccCCccC----------CceEEEE
Confidence 22222333344444432 22322 222 238999999998888776643221 1123467
Q ss_pred eccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEE
Q 002209 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALV 471 (953)
Q Consensus 406 wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~ 471 (953)
.||-|..|+.. ++...+|.+.. ..|+-.+.+.-++.++-+++-.|-...|+
T Consensus 445 lSpkGewiYci-------------gED~vlYCF~~--~sG~LE~tl~VhEkdvIGl~HHPHqNllA 495 (508)
T KOG0275|consen 445 LSPKGEWIYCI-------------GEDGVLYCFSV--LSGKLERTLPVHEKDVIGLTHHPHQNLLA 495 (508)
T ss_pred ecCCCcEEEEE-------------ccCcEEEEEEe--ecCceeeeeecccccccccccCcccchhh
Confidence 89999988776 55667888875 45555566666676777777777665554
|
|
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-07 Score=89.65 Aligned_cols=115 Identities=22% Similarity=0.225 Sum_probs=87.5
Q ss_pred CCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEE
Q 002209 755 VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPIL 834 (953)
Q Consensus 755 ~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~L 834 (953)
.++.+||++.|.|+||.++++++..+|....+.+..+++....... + ...-+. .+ ..|++
T Consensus 89 Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~--~--------------~~~~~~---~~-~~~i~ 148 (206)
T KOG2112|consen 89 GIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASIG--L--------------PGWLPG---VN-YTPIL 148 (206)
T ss_pred CCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchhh--c--------------cCCccc---cC-cchhh
Confidence 4788999999999999999999999976666666666654321111 0 000010 01 68999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 835 LVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 835 i~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
..||+.|+.|| ..-.....+.|+..+.++++..|+|.+|.... +-+..+..|+.+
T Consensus 149 ~~Hg~~d~~vp--~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~~-----~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 149 LCHGTADPLVP--FRFGEKSAQFLKSLGVRVTFKPYPGLGHSTSP-----QELDDLKSWIKT 203 (206)
T ss_pred eecccCCceee--hHHHHHHHHHHHHcCCceeeeecCCccccccH-----HHHHHHHHHHHH
Confidence 99999999999 88899999999999999999999999998753 335667778776
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-06 Score=93.08 Aligned_cols=301 Identities=14% Similarity=0.206 Sum_probs=159.3
Q ss_pred HhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeee
Q 002209 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQ 183 (953)
Q Consensus 104 ~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~ 183 (953)
+-+.-|.+....|||..++|+.-+.. + ...+++.+... .|.|||+.+ |.......+
T Consensus 245 ~RF~Hp~Vq~idfSP~EkYLVT~s~~--p--------------~~~~~~d~e~~------~l~IWDI~t-G~lkrsF~~- 300 (698)
T KOG2314|consen 245 QRFYHPGVQFIDFSPNEKYLVTYSPE--P--------------IIVEEDDNEGQ------QLIIWDIAT-GLLKRSFPV- 300 (698)
T ss_pred HhccCCCceeeecCCccceEEEecCC--c--------------cccCcccCCCc------eEEEEEccc-cchhcceec-
Confidence 33445678899999999999876653 0 01122222333 789999964 432222221
Q ss_pred cCCCCC-cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCC-----ceeecccCCCccccccccceEEecCCeE
Q 002209 184 GFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-----KARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (953)
Q Consensus 184 ~~~~~~-~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g-----~~~~lt~~~~~~~~~~~~~~~wspDg~~ 257 (953)
..+.. .-....||-|+|++|-.. ...|-+++..+- +...+ ++ +..+.|||-+..
T Consensus 301 -~~~~~~~WP~frWS~DdKy~Arm~----------~~sisIyEtpsf~lld~Kslki---~g------Ir~FswsP~~~l 360 (698)
T KOG2314|consen 301 -IKSPYLKWPIFRWSHDDKYFARMT----------GNSISIYETPSFMLLDKKSLKI---SG------IRDFSWSPTSNL 360 (698)
T ss_pred -cCCCccccceEEeccCCceeEEec----------cceEEEEecCceeeecccccCC---cc------ccCcccCCCcce
Confidence 11111 334568999999888654 234555543321 11111 22 678999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCcc--
Q 002209 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVY-- 334 (953)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~-- 334 (953)
|+|.++.....+ ..+-++.+ ++..-+..+--++
T Consensus 361 lAYwtpe~~~~p--------------------------------------------arvtL~evPs~~~iRt~nlfnVsD 396 (698)
T KOG2314|consen 361 LAYWTPETNNIP--------------------------------------------ARVTLMEVPSKREIRTKNLFNVSD 396 (698)
T ss_pred EEEEcccccCCc--------------------------------------------ceEEEEecCccceeeeccceeeec
Confidence 999955433221 11223333 3321111110111
Q ss_pred cccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCce
Q 002209 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (953)
Q Consensus 335 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~ 414 (953)
.-+.|-..|++|.|-..+.+-.- ....-.++.++.+..+++ |.-......-+-.++|-|.|.+.+
T Consensus 397 ckLhWQk~gdyLcvkvdR~tK~~---~~g~f~n~eIfrireKdI------------pve~velke~vi~FaWEP~gdkF~ 461 (698)
T KOG2314|consen 397 CKLHWQKSGDYLCVKVDRHTKSK---VKGQFSNLEIFRIREKDI------------PVEVVELKESVIAFAWEPHGDKFA 461 (698)
T ss_pred cEEEeccCCcEEEEEEEeecccc---ccceEeeEEEEEeeccCC------------CceeeecchheeeeeeccCCCeEE
Confidence 23568889999999876542110 001112444444442221 111111112335689999999887
Q ss_pred EEEEeccCCCcccccccCC--eEEEEecCCCCCCCceEEeec-ccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 415 YWAETQDGGDAKVEVTPRD--IIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~--~l~~~d~~~~~g~~~~~l~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
...-. .... ..|-+.. ++++++.+..- ....+.+.|||.|+.++.+.-.. .+..|..+|++-.
T Consensus 462 vi~g~----------~~k~tvsfY~~e~---~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s-~~g~l~F~D~~~a 527 (698)
T KOG2314|consen 462 VISGN----------TVKNTVSFYAVET---NIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVS-RRGDLEFYDTDYA 527 (698)
T ss_pred EEEcc----------ccccceeEEEeec---CCCchhhhhhhcccccceEEEcCCCcEEEEEEecc-cccceEEEecchh
Confidence 76211 1122 3344432 44555444222 24457799999999998876543 3357888887642
Q ss_pred CCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
+.......+.. ..-.+.|.|-|++++..+.
T Consensus 528 ~~k~~~~~eh~--------~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 528 DLKDTASPEHF--------AATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred hhhhccCcccc--------ccccceECCCCCEEEEeee
Confidence 11111111111 1111679999999987763
|
|
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=95.32 Aligned_cols=190 Identities=18% Similarity=0.168 Sum_probs=117.6
Q ss_pred CCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC-------------CChh---
Q 002209 667 DGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE-------------GDEE--- 730 (953)
Q Consensus 667 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~-------------G~~~--- 730 (953)
.+++|+||+.||- + .++..+..+...||++||+|.++..+|.... +...
T Consensus 115 ~~k~PvvvFSHGL------------g---gsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ 179 (399)
T KOG3847|consen 115 NDKYPVVVFSHGL------------G---GSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIK 179 (399)
T ss_pred CCCccEEEEeccc------------c---cchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceE
Confidence 4569999999992 1 2334445566789999999999888776430 0000
Q ss_pred -----hhh-------hhHHHHHHHHHHHHHHHHHc---------------------CCCCCCcEEEEEeChHHHHHHHHH
Q 002209 731 -----AND-------RFVEQLVACAEAAVEEVVRR---------------------GVAHPSKIAVGGHSYGAFMTANLL 777 (953)
Q Consensus 731 -----~~~-------~~~~~~~~D~~~~~~~l~~~---------------------~~~d~~~i~l~G~S~GG~~a~~~a 777 (953)
.++ .-...-+..+..|++-|.+. +.+|..+++|+|||+||..++...
T Consensus 180 ir~v~~~ekef~irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~s 259 (399)
T KOG3847|consen 180 IRLVEANEKEFHIRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASS 259 (399)
T ss_pred eeeeccCceeEEeeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhh
Confidence 000 11223355566666555432 246778899999999999999888
Q ss_pred HhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHH
Q 002209 778 AHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (953)
Q Consensus 778 ~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~ 857 (953)
+.+ ..|+|+|+..+. +.+... ....+++-|+|++.- .|.. ..++....++
T Consensus 260 s~~-t~FrcaI~lD~W----M~Pl~~--------------------~~~~~arqP~~finv-~~fQ----~~en~~vmKk 309 (399)
T KOG3847|consen 260 SSH-TDFRCAIALDAW----MFPLDQ--------------------LQYSQARQPTLFINV-EDFQ----WNENLLVMKK 309 (399)
T ss_pred ccc-cceeeeeeeeee----ecccch--------------------hhhhhccCCeEEEEc-cccc----chhHHHHHHh
Confidence 877 569999987652 111100 122346789999983 3544 3344555555
Q ss_pred HHhCCCcEEEEEeCCCCccCC-C---------------------cccHHHHHHHHHHHHHHhccCC
Q 002209 858 LKGHGALCRLVILPFESHGYA-A---------------------RESIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 858 l~~~g~~~~~~~~~~~~H~~~-~---------------------~~~~~~~~~~i~~fl~~~l~~~ 901 (953)
+...+..-.++.+.|+=|.-. . .+..+...+..++||++++...
T Consensus 310 i~~~n~g~~~it~~GsVHqnfsDfpfv~p~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~d~~ 375 (399)
T KOG3847|consen 310 IESQNEGNHVITLDGSVHQNFSDFPFVTPNWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHLDLV 375 (399)
T ss_pred hhCCCccceEEEEccceecccccCccccHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhhhhh
Confidence 555555557778888877421 0 1112344567889999987543
|
|
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-07 Score=90.70 Aligned_cols=122 Identities=13% Similarity=0.119 Sum_probs=72.5
Q ss_pred CCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC--C-cCc---ccccchhhhhHHHHHhcCccccc-CCCC
Q 002209 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT--P-FGF---QNEDRTLWEATSTYVEMSPFMSA-NKLK 830 (953)
Q Consensus 758 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~--~-~~~---~~~~~~~~~~~~~~~~~sp~~~~-~~i~ 830 (953)
++.+.|+|.|+||+.|.+++.+++ +++ |+++|++..... . .+. .......+-....+.+...+... ..-.
T Consensus 58 ~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~~~~~ 134 (187)
T PF05728_consen 58 PENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPYPTNP 134 (187)
T ss_pred CCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccccCCC
Confidence 345999999999999999998884 565 778887652110 0 000 00000001011122222221111 1124
Q ss_pred CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 831 ~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
.++|+++++.|++++ +..+...|+. +..++.+|.+|.+.+ .+.....|.+|+
T Consensus 135 ~~~lvll~~~DEvLd--~~~a~~~~~~-------~~~~i~~ggdH~f~~---f~~~l~~i~~f~ 186 (187)
T PF05728_consen 135 ERYLVLLQTGDEVLD--YREAVAKYRG-------CAQIIEEGGDHSFQD---FEEYLPQIIAFL 186 (187)
T ss_pred ccEEEEEecCCcccC--HHHHHHHhcC-------ceEEEEeCCCCCCcc---HHHHHHHHHHhh
Confidence 589999999999998 7665554432 234466888999864 456678888886
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.8e-07 Score=90.40 Aligned_cols=266 Identities=12% Similarity=0.132 Sum_probs=154.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+....||.||.+||..-.. +.|.||.+.+ | .....+. ....
T Consensus 108 SVt~~~FshdgtlLATGdms---------------------------------G~v~v~~~st-g--~~~~~~~--~e~~ 149 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATGDMS---------------------------------GKVLVFKVST-G--GEQWKLD--QEVE 149 (399)
T ss_pred ceEEEEEccCceEEEecCCC---------------------------------ccEEEEEccc-C--ceEEEee--cccC
Confidence 46678889999888875443 4678988854 2 2233332 2334
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....|.|-+..|++ +.....+|.+.+..+..-++....... ...-.+.|||++|+....+.....
T Consensus 150 dieWl~WHp~a~illA---------G~~DGsvWmw~ip~~~~~kv~~Gh~~~----ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 150 DIEWLKWHPRAHILLA---------GSTDGSVWMWQIPSQALCKVMSGHNSP----CTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred ceEEEEecccccEEEe---------ecCCCcEEEEECCCcceeeEecCCCCC----cccccccCCCceEEEEecCceEEE
Confidence 7889999998877777 445779999999885555565554432 556779999999997744322110
Q ss_pred --CCCCCCCCCCceeecCCCccccchhhhhhcC-CcchhhhhhhhccceEEEEEc-CCceeEeCCC----------Cccc
Q 002209 270 --PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLK-DEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----------AVYT 335 (953)
Q Consensus 270 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~----------~~~~ 335 (953)
++.. .|. -.+.+.++.+.- .+. +......+.-...+..+.++. +|++....++ ....
T Consensus 217 Wn~ktg-~p~-~~~~~~e~~~~~-------~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 217 WNPKTG-QPL-HKITQAEGLELP-------CISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred EecCCC-cee-EEecccccCcCC-------ccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence 1000 000 000001100000 000 000001111113345556666 6766655542 1122
Q ss_pred ccc---cCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002209 336 SLD---PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (953)
Q Consensus 336 ~~~---~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~ 412 (953)
++. ||.+=...|. +...+.|-+||+.....|.+..++ .++..+.|-+ ...
T Consensus 288 sve~~~~ss~lpL~A~-------------G~vdG~i~iyD~a~~~~R~~c~he-------------~~V~~l~w~~-t~~ 340 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAAC-------------GSVDGTIAIYDLAASTLRHICEHE-------------DGVTKLKWLN-TDY 340 (399)
T ss_pred hhhhcccccccchhhc-------------ccccceEEEEecccchhheeccCC-------------CceEEEEEcC-cch
Confidence 233 3333222222 334569999999988888877654 3456788877 333
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecc
Q 002209 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
|+-. ...+.|+.||+ .+|.....++.+...+..++.+||++.++..+.++
T Consensus 341 l~t~-------------c~~g~v~~wDa--RtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 341 LLTA-------------CANGKVRQWDA--RTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred heee-------------ccCceEEeeec--cccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 3332 44668999996 45544555677777888899999999988876554
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.6e-06 Score=89.75 Aligned_cols=336 Identities=13% Similarity=0.081 Sum_probs=179.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+...++||.|++|++.-.. +|.+|.-.. .. .++.+.. .
T Consensus 34 p~~~~~~SP~G~~l~~~~~~----------------------------------~V~~~~g~~----~~--~l~~~~~-~ 72 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAA----------------------------------GVECWGGPS----KA--KLVRFRH-P 72 (561)
T ss_pred chhheeecCcchheehhhcc----------------------------------ceEEccccc----hh--heeeeec-C
Confidence 46678999999998876543 455554321 11 2222332 3
Q ss_pred cccceEeccCCCeEEEEEeecc------ccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEec
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDA------EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~------~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~ 263 (953)
.+....|||.|++|..-.+..- ........+++++|..+|....-........ -.-..+.||-|.++++..
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~-~~Wp~~k~s~~D~y~ARv-- 149 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY-LGWPVLKFSIDDKYVARV-- 149 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc-cccceeeeeecchhhhhh--
Confidence 6888999999999987665441 1111223378999998887643222111100 001146677777666643
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCC----CCccccccc
Q 002209 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP----PAVYTSLDP 339 (953)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~----~~~~~~~~~ 339 (953)
....|+++.+++......- ..++..+.|
T Consensus 150 ------------------------------------------------v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 150 ------------------------------------------------VGSSLYIHEITDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred ------------------------------------------------ccCeEEEEecCCccccCchhhccccceeeEEe
Confidence 2245667776332222111 256788999
Q ss_pred CCCC--cEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002209 340 SPDE--KYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (953)
Q Consensus 340 SpDG--~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~ 416 (953)
||.| ..|+|-.-.. .+.+..+.+|.+- ++.++..+-... ....+.|.+.|+.|++.
T Consensus 182 sP~~n~~~la~~tPEk--------~~kpa~~~i~sIp~~s~l~tk~lfk~-------------~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 182 SPEGNHDELAYWTPEK--------LNKPAMVRILSIPKNSVLVTKNLFKV-------------SGVQLKWQVLGKYLLVL 240 (561)
T ss_pred cCCCCCceEEEEcccc--------CCCCcEEEEEEccCCCeeeeeeeEee-------------cccEEEEecCCceEEEE
Confidence 9964 3455554221 1224466677665 222222221111 11368899999999988
Q ss_pred EEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcE
Q 002209 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (953)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (953)
+.+.-..+..+ -+...||++++ ++...+........+-.+.|+|++++++..+..... .+-..++.++ .+
T Consensus 241 ~~t~~ksnKsy--fgesnLyl~~~---~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa--~~s~~~lr~N---l~ 310 (561)
T COG5354 241 VMTHTKSNKSY--FGESNLYLLRI---TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPA--SVSVFDLRGN---LR 310 (561)
T ss_pred EEEeeecccce--eccceEEEEee---cccccceeccccccceeeeecccCCceeEEeccccc--ceeecccccc---eE
Confidence 55443111100 12367899986 433322222335566779999999998776633322 3445555542 11
Q ss_pred EeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccce
Q 002209 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYY 576 (953)
Q Consensus 497 ~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~ 576 (953)
... +.+. .+- +.|||.++++++..-+. . ...+-.||..+.. ..+..-.+.
T Consensus 311 ~~~--Pe~~-----rNT-~~fsp~~r~il~agF~n-l-----------------~gni~i~~~~~rf-~~~~~~~~~--- 360 (561)
T COG5354 311 FYF--PEQK-----RNT-IFFSPHERYILFAGFDN-L-----------------QGNIEIFDPAGRF-KVAGAFNGL--- 360 (561)
T ss_pred Eec--CCcc-----ccc-ccccCcccEEEEecCCc-c-----------------ccceEEeccCCce-EEEEEeecC---
Confidence 111 1110 011 56999999998865321 0 1125666665432 222221111
Q ss_pred eeeEeeccCCccccccccCCEEEEEEecCC
Q 002209 577 ETTVALMSDQTEGDLYLNQLKILTSKESKT 606 (953)
Q Consensus 577 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 606 (953)
+-.-+.||||++.+.....+..
T Consensus 361 --------n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 361 --------NTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred --------CceEeeccCCceEEEecCCCcc
Confidence 0011468999987776555544
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.8e-06 Score=95.58 Aligned_cols=223 Identities=9% Similarity=0.053 Sum_probs=117.1
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccC-CCeEEEEEeeccccCCCCcceEEEEECCCCce--e-------e
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQD-GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--R-------P 233 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPD-G~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~--~-------~ 233 (953)
.|.+|+... ......+.++. ..+....|+|+ ++.|+..+ ....|.+|++..+.. . .
T Consensus 55 vI~L~~~~r---~~~v~~L~gH~--~~V~~lafsP~~~~lLASgS---------~DgtIrIWDi~t~~~~~~~i~~p~~~ 120 (568)
T PTZ00420 55 AIRLENQMR---KPPVIKLKGHT--SSILDLQFNPCFSEILASGS---------EDLTIRVWEIPHNDESVKEIKDPQCI 120 (568)
T ss_pred EEEeeecCC---CceEEEEcCCC--CCEEEEEEcCCCCCEEEEEe---------CCCeEEEEECCCCCccccccccceEE
Confidence 567777521 11222333332 46899999997 66666543 245667777654321 1 1
Q ss_pred cccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhcc
Q 002209 234 LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYAT 313 (953)
Q Consensus 234 lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 313 (953)
+..+. ..+..++|+|++..++++.. ..
T Consensus 121 L~gH~-----~~V~sVaf~P~g~~iLaSgS------------------------------------------------~D 147 (568)
T PTZ00420 121 LKGHK-----KKISIIDWNPMNYYIMCSSG------------------------------------------------FD 147 (568)
T ss_pred eecCC-----CcEEEEEECCCCCeEEEEEe------------------------------------------------CC
Confidence 21111 22778999999987654410 12
Q ss_pred ceEEEEEc-CCce-eEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccC
Q 002209 314 TQLVLVSL-DGTV-KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDI 390 (953)
Q Consensus 314 ~~l~~~~~-~g~~-~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~ 390 (953)
..|.++|+ +++. ..+.....+.+++|+|||+.|+.+..+. .|.+||+.++.. ..+..+.....
T Consensus 148 gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~-------------~IrIwD~Rsg~~i~tl~gH~g~~~- 213 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGK-------------HMHIIDPRKQEIASSFHIHDGGKN- 213 (568)
T ss_pred CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCC-------------EEEEEECCCCcEEEEEecccCCce-
Confidence 35667787 6643 3333336688999999999998776333 899999986543 33333221100
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCC--eeeccC-C
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG--ISWCDD-S 467 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~--~~~SpD-g 467 (953)
. .......|++|++.|+-. ..++ .....+.+||+ .+.+.+......+..... +.|.++ |
T Consensus 214 -s------~~v~~~~fs~d~~~IlTt--G~d~-------~~~R~VkLWDl--r~~~~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 214 -T------KNIWIDGLGGDDNYILST--GFSK-------NNMREMKLWDL--KNTTSALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred -e------EEEEeeeEcCCCCEEEEE--EcCC-------CCccEEEEEEC--CCCCCceEEEEecCCccceEEeeeCCCC
Confidence 0 000112356888766554 1100 11236899996 222333333233322222 455555 5
Q ss_pred ceEEEEEecccCceEEEEEc
Q 002209 468 LALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d 487 (953)
..++.+. .+ ...++|-+.
T Consensus 276 ~l~lsGk-GD-~tIr~~e~~ 293 (568)
T PTZ00420 276 LIYLIGK-GD-GNCRYYQHS 293 (568)
T ss_pred CEEEEEE-CC-CeEEEEEcc
Confidence 5444443 33 223555553
|
|
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.1e-08 Score=115.58 Aligned_cols=129 Identities=18% Similarity=0.160 Sum_probs=90.1
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHc-C-cEEEEcCCC-CCCCCC
Q 002209 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-G-FAILGGPTT-PIIGEG 727 (953)
Q Consensus 651 ~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G-~~V~~~~~~-~~~G~G 727 (953)
-++..+|.|...... .++||||++|||.+..+. ...+ ....+++. + ++|+.++|+ +..|+.
T Consensus 78 cl~l~i~~p~~~~~~--~~~pv~v~ihGG~~~~g~--------~~~~------~~~~~~~~~~~~~vv~~~yRlg~~g~~ 141 (493)
T cd00312 78 CLYLNVYTPKNTKPG--NSLPVMVWIHGGGFMFGS--------GSLY------PGDGLAREGDNVIVVSINYRLGVLGFL 141 (493)
T ss_pred CCeEEEEeCCCCCCC--CCCCEEEEEcCCccccCC--------CCCC------ChHHHHhcCCCEEEEEecccccccccc
Confidence 366788889754322 348999999998654332 1111 12344544 3 899998887 666765
Q ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccCCC
Q 002209 728 DEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (953)
Q Consensus 728 ~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~d 795 (953)
........+...+.|+..+++|+.++ ...|+++|.|+|+|+||.++..++... +.+|+++|+.+|...
T Consensus 142 ~~~~~~~~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 142 STGDIELPGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 43222222345578999999999875 247999999999999999999888763 357999999988654
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-07 Score=92.01 Aligned_cols=207 Identities=16% Similarity=0.126 Sum_probs=127.5
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChh
Q 002209 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (953)
Q Consensus 651 ~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~ 730 (953)
..+..|+.|.. .+.+|+|+++||.. -+..++....+.+++.||+|++++.+...+
T Consensus 32 PkpLlI~tP~~-----~G~yPVilF~HG~~---------------l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~----- 86 (307)
T PF07224_consen 32 PKPLLIVTPSE-----AGTYPVILFLHGFN---------------LYNSFYSQLLAHIASHGFIVVAPQLYTLFP----- 86 (307)
T ss_pred CCCeEEecCCc-----CCCccEEEEeechh---------------hhhHHHHHHHHHHhhcCeEEEechhhcccC-----
Confidence 34567777764 45699999999942 122334455667889999999988754332
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHc--------CCCCCCcEEEEEeChHHHHHHHHHHhCC-C-cccEEEEcccCCCCCCCC
Q 002209 731 ANDRFVEQLVACAEAAVEEVVRR--------GVAHPSKIAVGGHSYGAFMTANLLAHAP-H-LFCCGIARSGAYNRTLTP 800 (953)
Q Consensus 731 ~~~~~~~~~~~D~~~~~~~l~~~--------~~~d~~~i~l~G~S~GG~~a~~~a~~~p-~-~~~a~v~~~~~~d~~~~~ 800 (953)
.....++++..++++||.+. -..+.++++++|||.||..|..+|..+. + .|.|.|.+.|+.......
T Consensus 87 ---p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~~ 163 (307)
T PF07224_consen 87 ---PDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKGK 163 (307)
T ss_pred ---CCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCCC
Confidence 12367788889999998753 1256779999999999999999998662 2 488888888764321100
Q ss_pred cCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCC-----CCCCCchH--HHHHHHHHHHhCCCcEEEEEeCCC
Q 002209 801 FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEED-----NNSGTLTM--QSDRFFNALKGHGALCRLVILPFE 873 (953)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D-----~~v~~~~~--~~~~~~~~l~~~g~~~~~~~~~~~ 873 (953)
++ .+. ...+.|.. =++..|++||-...- -..||.+. +-++||+..+.. +-..+-.+-
T Consensus 164 -------~t---~P~-iLty~p~S--F~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk~p---~~hfV~~dY 227 (307)
T PF07224_consen 164 -------QT---PPP-ILTYVPQS--FDLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECKPP---CAHFVAKDY 227 (307)
T ss_pred -------CC---CCC-eeecCCcc--cccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhccc---ceeeeeccc
Confidence 00 000 00111111 135689999864433 11222243 347899998854 444455667
Q ss_pred CccCCCc------------------cc-----HHHHHHHHHHHHHHhccCC
Q 002209 874 SHGYAAR------------------ES-----IMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 874 ~H~~~~~------------------~~-----~~~~~~~i~~fl~~~l~~~ 901 (953)
||.-.-. +. +.-+-..+++||+.||...
T Consensus 228 GHmDmLDD~~~g~~G~~~~clCkng~~pr~pMRr~vgGivVAFL~a~l~~~ 278 (307)
T PF07224_consen 228 GHMDMLDDDTPGIIGKLSYCLCKNGKSPRDPMRRFVGGIVVAFLKAYLEGD 278 (307)
T ss_pred ccccccccCccccccceeeEeecCCCCcchHHHHhhhhhHHHHHHHHHcCC
Confidence 8853200 11 1223345889999998654
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.4e-06 Score=82.66 Aligned_cols=281 Identities=12% Similarity=0.079 Sum_probs=156.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCcccc---------ccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCcee
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEEL---------ARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~ 180 (953)
++..+.+.-||..|.....++.+.++.- ..-..-++.+.++.+.......+.+..+.+||+++ ++
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t----Gk-- 85 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET----GK-- 85 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC----Cc--
Confidence 4556777888876666555544444422 22223355667777766555556667889999965 33
Q ss_pred eeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECC-------CCce-eecccCCCccccccccceEEe
Q 002209 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-------TGKA-RPLFQSPDIYLNAIFDNFVWV 252 (953)
Q Consensus 181 ~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~-------~g~~-~~lt~~~~~~~~~~~~~~~ws 252 (953)
++..+..+..+....||++|..++++.+.. -.....|.+.++. +.++ .++.. ++.. +....|+
T Consensus 86 ~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~----mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t-~~sk----it~a~Wg 156 (327)
T KOG0643|consen 86 QLATWKTNSPVKRVDFSFGGNLILASTDKQ----MGYTCFVSVFDIRDDSSDIDSEEPYLKIPT-PDSK----ITSALWG 156 (327)
T ss_pred EEEEeecCCeeEEEeeccCCcEEEEEehhh----cCcceEEEEEEccCChhhhcccCceEEecC-Cccc----eeeeeec
Confidence 343355556788899999999999987532 2234455566655 3332 23322 2222 5678899
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeC-
Q 002209 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIG- 329 (953)
Q Consensus 253 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~- 329 (953)
|-|+.|++. . ..+.|-++|+ +|+.. .-.
T Consensus 157 ~l~~~ii~G----------------------------------------h---------e~G~is~~da~~g~~~v~s~~ 187 (327)
T KOG0643|consen 157 PLGETIIAG----------------------------------------H---------EDGSISIYDARTGKELVDSDE 187 (327)
T ss_pred ccCCEEEEe----------------------------------------c---------CCCcEEEEEcccCceeeechh
Confidence 999998866 0 2356778888 77432 221
Q ss_pred CC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-E-eccCCCcccCCccccccccCccceee
Q 002209 330 PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-E-LCDLPLAEDIPIAFNSVRKGMRSINW 406 (953)
Q Consensus 330 ~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~-l~~~~~~~~~p~~~~~~~~~~~~~~w 406 (953)
.. ..+.++.+|||..+.+..+.+. +-.+||..+-+.. . .+..|. ...++
T Consensus 188 ~h~~~Ind~q~s~d~T~FiT~s~Dt-------------takl~D~~tl~v~Kty~te~Pv---------------N~aai 239 (327)
T KOG0643|consen 188 EHSSKINDLQFSRDRTYFITGSKDT-------------TAKLVDVRTLEVLKTYTTERPV---------------NTAAI 239 (327)
T ss_pred hhccccccccccCCcceEEecccCc-------------cceeeeccceeeEEEeeecccc---------------cceec
Confidence 12 6788999999999988777443 6667887753322 2 233332 23556
Q ss_pred ccCCCCceEE--EEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEE
Q 002209 407 RSDKPSTLYW--AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (953)
Q Consensus 407 spDg~~i~~~--~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~ 484 (953)
+|--..++.. -++.+-.......+.. ....+++ .--.+...+..+-+.+++++|+|||+. |++....+..+|.
T Consensus 240 sP~~d~VilgGGqeA~dVTTT~~r~GKF-EArFyh~--i~eEEigrvkGHFGPINsvAfhPdGks--YsSGGEDG~VR~h 314 (327)
T KOG0643|consen 240 SPLLDHVILGGGQEAMDVTTTSTRAGKF-EARFYHL--IFEEEIGRVKGHFGPINSVAFHPDGKS--YSSGGEDGYVRLH 314 (327)
T ss_pred ccccceEEecCCceeeeeeeecccccch-hhhHHHH--HHHHHhccccccccCcceeEECCCCcc--cccCCCCceEEEE
Confidence 7755544443 0000000000000000 0000010 000122345566777889999999995 3333333444666
Q ss_pred EEc
Q 002209 485 VIS 487 (953)
Q Consensus 485 ~~d 487 (953)
.++
T Consensus 315 ~Fd 317 (327)
T KOG0643|consen 315 HFD 317 (327)
T ss_pred Eec
Confidence 555
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.1e-06 Score=94.76 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=71.7
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..+..++|+|++..++.+... .+.|.+||+.++... .+. .+ ..+.+++|+|||
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~------------DgtIrIWDl~tg~~~~~i~-~~-------------~~V~SlswspdG 179 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGF------------DSFVNIWDIENEKRAFQIN-MP-------------KKLSSLKWNIKG 179 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeC------------CCeEEEEECCCCcEEEEEe-cC-------------CcEEEEEECCCC
Confidence 668889999999987655422 248999999865432 222 11 234689999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCC-----eeeccCCceEEEEEecccCceEEEE
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG-----ISWCDDSLALVYESWYKTRRTRTWV 485 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~-----~~~SpDg~~l~~~~~~~~~~~~l~~ 485 (953)
+.++.. .....+.+||+ .++.....+..+.+.... ..|++|+++|+..+..+.....+.+
T Consensus 180 ~lLat~-------------s~D~~IrIwD~--Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkL 244 (568)
T PTZ00420 180 NLLSGT-------------CVGKHMHIIDP--RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKL 244 (568)
T ss_pred CEEEEE-------------ecCCEEEEEEC--CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEE
Confidence 966544 33457899996 333223334444333221 2356899998887655432224555
Q ss_pred EcCCC
Q 002209 486 ISPGS 490 (953)
Q Consensus 486 ~d~~~ 490 (953)
+|+..
T Consensus 245 WDlr~ 249 (568)
T PTZ00420 245 WDLKN 249 (568)
T ss_pred EECCC
Confidence 55553
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-06 Score=84.24 Aligned_cols=104 Identities=18% Similarity=0.316 Sum_probs=70.7
Q ss_pred cCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCC
Q 002209 107 DAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP 186 (953)
Q Consensus 107 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~ 186 (953)
....++.++|||.|++||..+.+ . ..-||.- .++. -..+..+.
T Consensus 60 hkrsVRsvAwsp~g~~La~aSFD-------------------------~--------t~~Iw~k-~~~e---fecv~~lE 102 (312)
T KOG0645|consen 60 HKRSVRSVAWSPHGRYLASASFD-------------------------A--------TVVIWKK-EDGE---FECVATLE 102 (312)
T ss_pred chheeeeeeecCCCcEEEEeecc-------------------------c--------eEEEeec-CCCc---eeEEeeee
Confidence 34578899999999999999876 1 3345553 2332 22233333
Q ss_pred CC-CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCcee----ecccCCCccccccccceEEecCCeEEEEE
Q 002209 187 DG-AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR----PLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 187 ~~-~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~----~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
.. ..+-.++||++|..||..++ ...+|++.++.+..- -|..+... +..+.|.|--..|+..
T Consensus 103 GHEnEVK~Vaws~sG~~LATCSR---------DKSVWiWe~deddEfec~aVL~~HtqD-----VK~V~WHPt~dlL~S~ 168 (312)
T KOG0645|consen 103 GHENEVKCVAWSASGNYLATCSR---------DKSVWIWEIDEDDEFECIAVLQEHTQD-----VKHVIWHPTEDLLFSC 168 (312)
T ss_pred ccccceeEEEEcCCCCEEEEeeC---------CCeEEEEEecCCCcEEEEeeecccccc-----ccEEEEcCCcceeEEe
Confidence 22 37888999999999999886 668899888755432 23333332 6789999987777755
|
|
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.9e-07 Score=80.53 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=87.9
Q ss_pred hHHHHHHHcCcEEEEcC--CCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002209 703 TSVLLWLARGFAILGGP--TTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~--~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
..+..|+.+|+.|..++ |+-.+-.|....+.. ....-...+.++..|.+. .+..++++.|+||||-++..++..-
T Consensus 34 ~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~-~~t~~~~~~~~~aql~~~--l~~gpLi~GGkSmGGR~aSmvade~ 110 (213)
T COG3571 34 AVAAALARRGWLVARFEFPYMAARRTGRRKPPPG-SGTLNPEYIVAIAQLRAG--LAEGPLIIGGKSMGGRVASMVADEL 110 (213)
T ss_pred HHHHHHHhCceeEEEeecchhhhccccCCCCcCc-cccCCHHHHHHHHHHHhc--ccCCceeeccccccchHHHHHHHhh
Confidence 34567889999999833 333333332211111 011112223444445444 3456899999999999998887643
Q ss_pred CCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHh
Q 002209 781 PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (953)
Q Consensus 781 p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~ 860 (953)
-..+.+.++.+-.+. +.+-++. . -..++..+++|+||.||+.|..-. -++.. -..
T Consensus 111 ~A~i~~L~clgYPfh----ppGKPe~----------~----Rt~HL~gl~tPtli~qGtrD~fGt--r~~Va-----~y~ 165 (213)
T COG3571 111 QAPIDGLVCLGYPFH----PPGKPEQ----------L----RTEHLTGLKTPTLITQGTRDEFGT--RDEVA-----GYA 165 (213)
T ss_pred cCCcceEEEecCccC----CCCCccc----------c----hhhhccCCCCCeEEeecccccccC--HHHHH-----hhh
Confidence 233667666543221 1111111 1 124667789999999999998765 44431 112
Q ss_pred CCCcEEEEEeCCCCccCC
Q 002209 861 HGALCRLVILPFESHGYA 878 (953)
Q Consensus 861 ~g~~~~~~~~~~~~H~~~ 878 (953)
...+++++++.++.|.+.
T Consensus 166 ls~~iev~wl~~adHDLk 183 (213)
T COG3571 166 LSDPIEVVWLEDADHDLK 183 (213)
T ss_pred cCCceEEEEeccCccccc
Confidence 345789999999999874
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.7e-06 Score=82.64 Aligned_cols=150 Identities=13% Similarity=0.181 Sum_probs=102.9
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
..+++++|||.|++|+..+.+ ..+.+|....++..-+....+. ...+..++||++|.
T Consensus 62 rsVRsvAwsp~g~~La~aSFD-------------~t~~Iw~k~~~efecv~~lEGH----------EnEVK~Vaws~sG~ 118 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFD-------------ATVVIWKKEDGEFECVATLEGH----------ENEVKCVAWSASGN 118 (312)
T ss_pred heeeeeeecCCCcEEEEeecc-------------ceEEEeecCCCceeEEeeeecc----------ccceeEEEEcCCCC
Confidence 568899999999999998844 4788887777777766665533 35567899999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCce---EEeecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE---ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~---~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
.||-- +....+|+|.+ ..+.+.. .|..+..++..+.|.|--..|+..+.+++. ++|.-+.
T Consensus 119 ~LATC-------------SRDKSVWiWe~--deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTI--k~~~~~~ 181 (312)
T KOG0645|consen 119 YLATC-------------SRDKSVWIWEI--DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTI--KVYRDED 181 (312)
T ss_pred EEEEe-------------eCCCeEEEEEe--cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeE--EEEeecC
Confidence 77765 44557899986 2334433 356778889999999977766665555544 6776654
Q ss_pred CCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
+. +=.-.+..+.....++. +.|.+.|..|+...
T Consensus 182 dd-dW~c~~tl~g~~~TVW~------~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 182 DD-DWECVQTLDGHENTVWS------LAFDNIGSRLVSCS 214 (312)
T ss_pred CC-CeeEEEEecCccceEEE------EEecCCCceEEEec
Confidence 22 11223333444334444 77899998887775
|
|
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.2e-07 Score=93.05 Aligned_cols=218 Identities=17% Similarity=0.101 Sum_probs=122.5
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE--cCCCCCCC----
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG--GPTTPIIG---- 725 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~--~~~~~~~G---- 725 (953)
.+..+++|...+.. ..|+.|++.|. | .+.|-......+..|++.|++.+. .+|++.+-
T Consensus 77 a~~~~~~P~~~~~~---~rp~~IhLagT------------G-Dh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q 140 (348)
T PF09752_consen 77 ARFQLLLPKRWDSP---YRPVCIHLAGT------------G-DHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQ 140 (348)
T ss_pred eEEEEEECCccccC---CCceEEEecCC------------C-ccchhhhhhhhhhHHHHcCcceEEEecccccccChhHh
Confidence 45566678765222 37899999883 1 122322233336678888988877 34433221
Q ss_pred --CCChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC-----
Q 002209 726 --EGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR----- 796 (953)
Q Consensus 726 --~G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~----- 796 (953)
.......+ ..+...+.+....+.|+.++++ .+++|.|.||||.||..+++..|.-+..+-+.++.+..
T Consensus 141 ~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~ 217 (348)
T PF09752_consen 141 RRSSLRNVSDLFVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTE 217 (348)
T ss_pred hcccccchhHHHHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhh
Confidence 00000001 1135668888899999999865 49999999999999999999998755554444432210
Q ss_pred -CC---CCcC----------ccccc---------------chhhhhHHHHH----hcCcccccCCCCC-----cEEEEEe
Q 002209 797 -TL---TPFG----------FQNED---------------RTLWEATSTYV----EMSPFMSANKLKK-----PILLVHG 838 (953)
Q Consensus 797 -~~---~~~~----------~~~~~---------------~~~~~~~~~~~----~~sp~~~~~~i~~-----P~Li~~G 838 (953)
.+ ..|. +.+.. ...+.+.+... .+.-..++.++.+ .+.++.+
T Consensus 218 Gvls~~i~W~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A 297 (348)
T PF09752_consen 218 GVLSNSINWDALEKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAA 297 (348)
T ss_pred hhhhcCCCHHHHHHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEe
Confidence 00 0010 00000 00000011111 1112233444433 4788999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
++|..|| ..+...+-+.... +++..+++ ||.-....+...+.+.|.+=|+
T Consensus 298 ~~DaYVP--r~~v~~Lq~~WPG----sEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 298 KNDAYVP--RHGVLSLQEIWPG----SEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred cCceEec--hhhcchHHHhCCC----CeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 9999998 7666666555543 47777888 9975433444555566666554
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-07 Score=96.98 Aligned_cols=268 Identities=9% Similarity=0.078 Sum_probs=158.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..+.|+|+|++|+..+.. ++.-+|+... -....|. -.+..
T Consensus 98 ~V~~v~WtPeGRRLltgs~S---------------------------------GEFtLWNg~~----fnFEtil-QaHDs 139 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQS---------------------------------GEFTLWNGTS----FNFETIL-QAHDS 139 (464)
T ss_pred ceeeEEEcCCCceeEeeccc---------------------------------ccEEEecCce----eeHHHHh-hhhcc
Confidence 36678999999999988764 2345666421 1211221 11334
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.++...||+||.+++. ++...-|-.++++-....-+....... +..+++||....++..+
T Consensus 140 ~Vr~m~ws~~g~wmiS---------gD~gG~iKyWqpnmnnVk~~~ahh~ea----IRdlafSpnDskF~t~S------- 199 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWMIS---------GDKGGMIKYWQPNMNNVKIIQAHHAEA----IRDLAFSPNDSKFLTCS------- 199 (464)
T ss_pred cceeEEEccCCCEEEE---------cCCCceEEecccchhhhHHhhHhhhhh----hheeccCCCCceeEEec-------
Confidence 7899999999999987 334445555555443332222222121 77899998766665441
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CCceeEeCCC-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g~~~~l~~~-~~~~~~~~SpDG~~l 346 (953)
..+.|-+.|. ..+.+.|... ..+.+++|.|.-..|
T Consensus 200 ------------------------------------------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLi 237 (464)
T KOG0284|consen 200 ------------------------------------------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLI 237 (464)
T ss_pred ------------------------------------------CCCeEEEEeccCCchhheeccCCCCcceeccCCcccee
Confidence 1133445555 3455666655 778999999977666
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
+..+.++ -|.+||..++ .+-.+..+. .-+-.+.|+|+|..|+-.
T Consensus 238 asgskDn-------------lVKlWDprSg~cl~tlh~HK-------------ntVl~~~f~~n~N~Llt~--------- 282 (464)
T KOG0284|consen 238 ASGSKDN-------------LVKLWDPRSGSCLATLHGHK-------------NTVLAVKFNPNGNWLLTG--------- 282 (464)
T ss_pred EEccCCc-------------eeEeecCCCcchhhhhhhcc-------------ceEEEEEEcCCCCeeEEc---------
Confidence 6555332 6889998743 333333322 234568899999766554
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCcc
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 505 (953)
+.+..+-++|+ ..=.+...+-.+...+..+.|+|=-..|+.+...++. ...|.+++.. ....+...+...
T Consensus 283 ----skD~~~kv~Di--R~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~---p~~~i~~AHd~~ 352 (464)
T KOG0284|consen 283 ----SKDQSCKVFDI--RTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEE---PLGEIPPAHDGE 352 (464)
T ss_pred ----cCCceEEEEeh--hHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEeccccc---cccCCCcccccc
Confidence 44556778886 1112233344566778889999988777766543322 3456665333 222233333333
Q ss_pred ccCCCCCCCeEeccCCCEEEEEe
Q 002209 506 VYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 506 ~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
+.+ ++|.|=|..|+..+
T Consensus 353 iws------l~~hPlGhil~tgs 369 (464)
T KOG0284|consen 353 IWS------LAYHPLGHILATGS 369 (464)
T ss_pred eee------eeccccceeEeecC
Confidence 444 77888887776654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-06 Score=99.05 Aligned_cols=256 Identities=13% Similarity=0.133 Sum_probs=152.1
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEE--------ecCCCCCCcceeeeeceEEEEccCCCCCCceeee
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLR--------IDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEI 182 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l 182 (953)
...+.|.|||+.|.....++...++.-..++.+...+. +.-..+.....+..+.|.++.... +. ...-|
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps-~~--~~~iL 92 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS-GE--EDTIL 92 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC-CC--cccee
Confidence 44678999999888777664433333332222111111 111122222222235567777633 21 12233
Q ss_pred ecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEe
Q 002209 183 QGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (953)
Q Consensus 183 ~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~ 262 (953)
+.++ ..+...+++-||++||+.+ ....|-+++.+.+.....+...+.. +..+.+.|.|.+|+++.
T Consensus 93 ~Rft--lp~r~~~v~g~g~~iaags---------dD~~vK~~~~~D~s~~~~lrgh~ap----Vl~l~~~p~~~fLAvss 157 (933)
T KOG1274|consen 93 ARFT--LPIRDLAVSGSGKMIAAGS---------DDTAVKLLNLDDSSQEKVLRGHDAP----VLQLSYDPKGNFLAVSS 157 (933)
T ss_pred eeee--ccceEEEEecCCcEEEeec---------CceeEEEEeccccchheeecccCCc----eeeeeEcCCCCEEEEEe
Confidence 3333 3578889999999999944 4778888988876655554443332 77899999999999872
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeC---CC------
Q 002209 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIG---PP------ 331 (953)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~---~~------ 331 (953)
..+.+.++++ +|... .++ ..
T Consensus 158 -------------------------------------------------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s 188 (933)
T KOG1274|consen 158 -------------------------------------------------CDGKVQIWDLQDGILSKTLTGVDKDNEFILS 188 (933)
T ss_pred -------------------------------------------------cCceEEEEEcccchhhhhcccCCcccccccc
Confidence 3356777777 66322 121 11
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
..+..++|+|||..+++...++ .|.+++.++.+.......... ...+..++|||+|+
T Consensus 189 ~i~~~~aW~Pk~g~la~~~~d~-------------~Vkvy~r~~we~~f~Lr~~~~----------ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 189 RICTRLAWHPKGGTLAVPPVDN-------------TVKVYSRKGWELQFKLRDKLS----------SSKFSDLQWSPNGK 245 (933)
T ss_pred ceeeeeeecCCCCeEEeeccCC-------------eEEEEccCCceeheeeccccc----------ccceEEEEEcCCCc
Confidence 2345789999988888777554 788888887654432221111 12245689999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEe
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~ 475 (953)
+||-. .-.++|.+||. +.-. + ......+...+|-|+...|-+..+
T Consensus 246 YiAAs-------------~~~g~I~vWnv---~t~~--~-~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 246 YIAAS-------------TLDGQILVWNV---DTHE--R-HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred EEeee-------------ccCCcEEEEec---ccch--h-ccccceeEEEecCCCCCeeEEEee
Confidence 88876 45678888986 3211 1 122233455677777776666543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.9e-06 Score=93.08 Aligned_cols=243 Identities=13% Similarity=0.140 Sum_probs=147.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
..+.++||+|....|..... +++++++.. ..+....|. ..
T Consensus 127 ~~W~~qfs~dEsl~arlv~n----------------------------------ev~f~~~~~--f~~~~~kl~----~~ 166 (566)
T KOG2315|consen 127 NGWVPQFSIDESLAARLVSN----------------------------------EVQFYDLGS--FKTIQHKLS----VS 166 (566)
T ss_pred cCcccccccchhhhhhhhcc----------------------------------eEEEEecCC--ccceeeeee----cc
Confidence 34688889988877776653 678888743 223344443 23
Q ss_pred cccceEeccCCC--eEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 190 KLNFVTWSQDGK--HLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 190 ~~~~~~wSPDG~--~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
.++...+||-+. +||+-. ....+......||.+... +.-..+....- +.+.--.+.|.+-|+-|++.+
T Consensus 167 ~i~~f~lSpgp~~~~vAvyv--Pe~kGaPa~vri~~~~~~-~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLa----- 236 (566)
T KOG2315|consen 167 GITMLSLSPGPEPPFVAVYV--PEKKGAPASVRIYKYPEE-GQHQPVANKSF--FKADKVQMKWNKLGTALLVLA----- 236 (566)
T ss_pred ceeeEEecCCCCCceEEEEc--cCCCCCCcEEEEeccccc-cccchhhhccc--cccceeEEEeccCCceEEEEE-----
Confidence 578888898644 444422 111222345566766622 22222211110 111122678999998655541
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeE--eCCCCcccccccCCCCcE
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKE--IGPPAVYTSLDPSPDEKY 345 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~--l~~~~~~~~~~~SpDG~~ 345 (953)
...-|...-.||+...||.++.+|.... +...+.+.++.|||+|+.
T Consensus 237 --------------------------------stdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 237 --------------------------------STDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred --------------------------------EEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 2233444556679999999999765444 444488999999999998
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
.++.-.- .+..+.++|+++.-+-.+...+. ..+-|+|.|..|++.-- |
T Consensus 285 F~VvyGf-----------MPAkvtifnlr~~~v~df~egpR---------------N~~~fnp~g~ii~lAGF---G--- 332 (566)
T KOG2315|consen 285 FAVVYGF-----------MPAKVTIFNLRGKPVFDFPEGPR---------------NTAFFNPHGNIILLAGF---G--- 332 (566)
T ss_pred EEEEEec-----------ccceEEEEcCCCCEeEeCCCCCc---------------cceEECCCCCEEEEeec---C---
Confidence 8877522 24578889998766554443221 23779999998777610 0
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecc-cccCCeeeccCCceEEEEEe
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCDDSLALVYESW 475 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~-~~~~~~~~SpDg~~l~~~~~ 475 (953)
.-.+.+-+||+ . ..+.+.... .+...+.|||||++++.+..
T Consensus 333 ----NL~G~mEvwDv---~--n~K~i~~~~a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 333 ----NLPGDMEVWDV---P--NRKLIAKFKAANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred ----CCCCceEEEec---c--chhhccccccCCceEEEEcCCCcEEEEEec
Confidence 23457888886 2 234444433 23455899999999887653
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-06 Score=93.06 Aligned_cols=270 Identities=11% Similarity=0.088 Sum_probs=162.8
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
.+.+...||. ...||..- ...+|+++..+|+...|....... +.++.|+++|+.|++..
T Consensus 178 fY~nlldWss-~n~laVal----------g~~vylW~~~s~~v~~l~~~~~~~----vtSv~ws~~G~~LavG~------ 236 (484)
T KOG0305|consen 178 FYLNLLDWSS-ANVLAVAL----------GQSVYLWSASSGSVTELCSFGEEL----VTSVKWSPDGSHLAVGT------ 236 (484)
T ss_pred HhhhHhhccc-CCeEEEEe----------cceEEEEecCCCceEEeEecCCCc----eEEEEECCCCCEEEEee------
Confidence 3566678994 44566543 568999999999998888764332 78999999999999872
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CCceeEeCC-C-CcccccccCCCCc
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGP-P-AVYTSLDPSPDEK 344 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g~~~~l~~-~-~~~~~~~~SpDG~ 344 (953)
..+.+.++|. ....+.+.. . ..+..++|. +.
T Consensus 237 -------------------------------------------~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~ 271 (484)
T KOG0305|consen 237 -------------------------------------------SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SS 271 (484)
T ss_pred -------------------------------------------cCCeEEEEehhhccccccccCCcCceeEEEecc--Cc
Confidence 2245566676 334555555 3 778888898 33
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
.+...+. .+.|..+|+...+...-+ ..++...+-.+.|++|++.++-.
T Consensus 272 ~lssGsr-------------~~~I~~~dvR~~~~~~~~-----------~~~H~qeVCgLkws~d~~~lASG-------- 319 (484)
T KOG0305|consen 272 VLSSGSR-------------DGKILNHDVRISQHVVST-----------LQGHRQEVCGLKWSPDGNQLASG-------- 319 (484)
T ss_pred eEEEecC-------------CCcEEEEEEecchhhhhh-----------hhcccceeeeeEECCCCCeeccC--------
Confidence 3333331 236777777532211000 11222345679999999976654
Q ss_pred cccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCc
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 504 (953)
+.++.+++||. ........++.+...+..++|+|=.+-|+.+..... ...|...|..++ +...-.+...+
T Consensus 320 -----gnDN~~~Iwd~--~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~-D~~i~fwn~~~g--~~i~~vdtgsQ 389 (484)
T KOG0305|consen 320 -----GNDNVVFIWDG--LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSA-DRCIKFWNTNTG--ARIDSVDTGSQ 389 (484)
T ss_pred -----CCccceEeccC--CCccccEEEeccceeeeEeeeCCCccCceEEcCCCc-ccEEEEEEcCCC--cEecccccCCc
Confidence 44678899985 233344567888899999999998777666543221 235556666664 22221221111
Q ss_pred cccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEecc-CcccceeeeEeec
Q 002209 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES-DKEKYYETTVALM 583 (953)
Q Consensus 505 ~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~ 583 (953)
+-+ +.||+..+-|+...-.. ...|-+|+..+-+......+ ... +..
T Consensus 390 -Vcs------L~Wsk~~kEi~sthG~s-------------------~n~i~lw~~ps~~~~~~l~gH~~R-----Vl~-- 436 (484)
T KOG0305|consen 390 -VCS------LIWSKKYKELLSTHGYS-------------------ENQITLWKYPSMKLVAELLGHTSR-----VLY-- 436 (484)
T ss_pred -eee------EEEcCCCCEEEEecCCC-------------------CCcEEEEeccccceeeeecCCcce-----eEE--
Confidence 122 78999998887765211 12466777665443332222 221 222
Q ss_pred cCCccccccccCCEEEEEEec
Q 002209 584 SDQTEGDLYLNQLKILTSKES 604 (953)
Q Consensus 584 ~~~~~~~~s~dg~~l~~~~~~ 604 (953)
.++||||.+++.....
T Consensus 437 -----la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 437 -----LALSPDGETIVTGAAD 452 (484)
T ss_pred -----EEECCCCCEEEEeccc
Confidence 3678998877754443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-05 Score=86.16 Aligned_cols=302 Identities=12% Similarity=0.145 Sum_probs=160.7
Q ss_pred hhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeec
Q 002209 105 IVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQG 184 (953)
Q Consensus 105 ~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~ 184 (953)
-+..+.+..+.|||.|++|..-++. ++ ++|+... ......+++.+||..+ |..-.......
T Consensus 68 ~~~~~~V~~~~fSP~~kYL~tw~~~---pi--------------~~pe~e~-sp~~~~n~~~vwd~~s-g~iv~sf~~~~ 128 (561)
T COG5354 68 RFRHPDVKYLDFSPNEKYLVTWSRE---PI--------------IEPEIEI-SPFTSKNNVFVWDIAS-GMIVFSFNGIS 128 (561)
T ss_pred eeecCCceecccCcccceeeeeccC---Cc--------------cChhhcc-CCccccCceeEEeccC-ceeEeeccccC
Confidence 3445678899999999999887764 11 1111111 1111223689999843 21111111111
Q ss_pred CCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc-ccccceEEecCC--eEEEEE
Q 002209 185 FPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN-AIFDNFVWVNNS--TLLVCT 261 (953)
Q Consensus 185 ~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~-~~~~~~~wspDg--~~l~~~ 261 (953)
.+.- .-....||-|.+++|... ...|+++++ ++...+. +...+. ..+..+.|||.| ..|+|.
T Consensus 129 q~~~-~Wp~~k~s~~D~y~ARvv----------~~sl~i~e~-t~n~~~~---p~~~lr~~gi~dFsisP~~n~~~la~~ 193 (561)
T COG5354 129 QPYL-GWPVLKFSIDDKYVARVV----------GSSLYIHEI-TDNIEEH---PFKNLRPVGILDFSISPEGNHDELAYW 193 (561)
T ss_pred Cccc-ccceeeeeecchhhhhhc----------cCeEEEEec-CCccccC---chhhccccceeeEEecCCCCCceEEEE
Confidence 1100 122568999999998865 568899987 4433222 111011 116689999874 457777
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccC
Q 002209 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPS 340 (953)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~S 340 (953)
++...+.. +.-.|+.+..+......+-. ..-..+.|.
T Consensus 194 tPEk~~kp------------------------------------------a~~~i~sIp~~s~l~tk~lfk~~~~qLkW~ 231 (561)
T COG5354 194 TPEKLNKP------------------------------------------AMVRILSIPKNSVLVTKNLFKVSGVQLKWQ 231 (561)
T ss_pred ccccCCCC------------------------------------------cEEEEEEccCCCeeeeeeeEeecccEEEEe
Confidence 55444331 11223333322211111111 222357899
Q ss_pred CCCcEEEEEEecCCccccccCCCC--CcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002209 341 PDEKYILISSIHRPYSFIVPCGRF--PRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (953)
Q Consensus 341 pDG~~l~~~~~~~~~~~~~~~~~~--~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~ 418 (953)
+.|++|.+...+.--+ ...+ ..+++++++.+..++...... +-+-++.|+|+++..+...-
T Consensus 232 ~~g~~ll~l~~t~~ks----nKsyfgesnLyl~~~~e~~i~V~~~~~-------------~pVhdf~W~p~S~~F~vi~g 294 (561)
T COG5354 232 VLGKYLLVLVMTHTKS----NKSYFGESNLYLLRITERSIPVEKDLK-------------DPVHDFTWEPLSSRFAVISG 294 (561)
T ss_pred cCCceEEEEEEEeeec----ccceeccceEEEEeecccccceecccc-------------ccceeeeecccCCceeEEec
Confidence 9999999887654211 1111 248999988855544332111 12357899999998777621
Q ss_pred eccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEe
Q 002209 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (953)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 498 (953)
.+ ...+-.+++ .+. ......+..-..+.|||.+++++++..++.. ..+-+++..+. ...+
T Consensus 295 ~~-----------pa~~s~~~l---r~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~-gni~i~~~~~r---f~~~ 354 (561)
T COG5354 295 YM-----------PASVSVFDL---RGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQ-GNIEIFDPAGR---FKVA 354 (561)
T ss_pred cc-----------ccceeeccc---ccc--eEEecCCcccccccccCcccEEEEecCCccc-cceEEeccCCc---eEEE
Confidence 11 113344443 322 2223334444568899999999998765532 35666676663 2332
Q ss_pred --ecCCCccccCCCCCCCeEeccCCCEEEEE
Q 002209 499 --FDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (953)
Q Consensus 499 --~~~~~~~~~~~~~~p~~~~SpDG~~l~~~ 527 (953)
++..... + ..|||||+++...
T Consensus 355 ~~~~~~n~s-~-------~~wspd~qF~~~~ 377 (561)
T COG5354 355 GAFNGLNTS-Y-------CDWSPDGQFYDTD 377 (561)
T ss_pred EEeecCCce-E-------eeccCCceEEEec
Confidence 2221111 1 4599999876544
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-05 Score=86.06 Aligned_cols=333 Identities=12% Similarity=0.077 Sum_probs=179.9
Q ss_pred CCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCcc
Q 002209 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (953)
Q Consensus 112 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~ 191 (953)
....+|++|+.+|+...+ .++|.+... .. ..++..+. ..
T Consensus 38 ~v~~~S~~G~lfA~~~~~----------------------------------~v~i~~~~~----~~-~~lt~~~~--~~ 76 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQ----------------------------------VVKVFEIAT----LK-VVLCVELK--KT 76 (566)
T ss_pred eeEEEcCCCcEEEEEcCC----------------------------------eEEEEEccC----Cc-EEEEeccc--ee
Confidence 456789999999998874 668877643 11 33443332 57
Q ss_pred cceEeccCCCeEEEEEeeccccC-CCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 192 NFVTWSQDGKHLAFSIRIDAEDS-SSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 192 ~~~~wSPDG~~laf~~~~~~~~~-~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
....+||-|..|..-.......+ ..+..++-+++++++..+--...... + -..+.||.|....+..
T Consensus 77 ~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q---~-~W~~qfs~dEsl~arl--------- 143 (566)
T KOG2315|consen 77 YDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ---N-GWVPQFSIDESLAARL--------- 143 (566)
T ss_pred eeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhh---c-Ccccccccchhhhhhh---------
Confidence 88999999998876444332222 23346777777777433211111110 0 0157788777655533
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc---CCceeEeCCCCcccccccCCCCcEEE
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DGTVKEIGPPAVYTSLDPSPDEKYIL 347 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~---~g~~~~l~~~~~~~~~~~SpDG~~l~ 347 (953)
..+.++.+++ .+....|.. ..++.+.+||-+..-.
T Consensus 144 -----------------------------------------v~nev~f~~~~~f~~~~~kl~~-~~i~~f~lSpgp~~~~ 181 (566)
T KOG2315|consen 144 -----------------------------------------VSNEVQFYDLGSFKTIQHKLSV-SGITMLSLSPGPEPPF 181 (566)
T ss_pred -----------------------------------------hcceEEEEecCCccceeeeeec-cceeeEEecCCCCCce
Confidence 2245556665 233333332 4677788888655433
Q ss_pred EEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe-ccCCCc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET-QDGGDA 425 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~-~~~~~~ 425 (953)
+..... . ....+..+.+|... .+....+..-.. |- .....+.|.+-|+.|+..+.. -|..+.
T Consensus 182 vAvyvP-e-----~kGaPa~vri~~~~~~~~~~~~a~ksF-------Fk---adkvqm~WN~~gt~LLvLastdVDktn~ 245 (566)
T KOG2315|consen 182 VAVYVP-E-----KKGAPASVRIYKYPEEGQHQPVANKSF-------FK---ADKVQMKWNKLGTALLVLASTDVDKTNA 245 (566)
T ss_pred EEEEcc-C-----CCCCCcEEEEeccccccccchhhhccc-------cc---cceeEEEeccCCceEEEEEEEeecCCCc
Confidence 332111 0 11223455555443 111111111110 00 011357899999988877432 233222
Q ss_pred ccccccCCeEEEEecCCCCCCCceEE-eecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCc
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 504 (953)
.+ -+...||+++. + |....+ ....+.+..+.|+|+|+.++........ .+-++|+.+. .+++-..+
T Consensus 246 SY--YGEq~Lyll~t---~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPA--kvtifnlr~~-----~v~df~eg 312 (566)
T KOG2315|consen 246 SY--YGEQTLYLLAT---Q-GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPA--KVTIFNLRGK-----PVFDFPEG 312 (566)
T ss_pred cc--cccceEEEEEe---c-CceEEEecCCCCCceEEEECCCCCEEEEEEecccc--eEEEEcCCCC-----EeEeCCCC
Confidence 22 34567899885 4 343333 2336678889999999987665543333 5666777662 22222222
Q ss_pred cccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeecc
Q 002209 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMS 584 (953)
Q Consensus 505 ~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 584 (953)
. .+- +-|+|-|+.|++..-+. - ...+-+||..+.+ .|......
T Consensus 313 p-----RN~-~~fnp~g~ii~lAGFGN---------------L---~G~mEvwDv~n~K--~i~~~~a~----------- 355 (566)
T KOG2315|consen 313 P-----RNT-AFFNPHGNIILLAGFGN---------------L---PGDMEVWDVPNRK--LIAKFKAA----------- 355 (566)
T ss_pred C-----ccc-eEECCCCCEEEEeecCC---------------C---CCceEEEeccchh--hccccccC-----------
Confidence 1 111 66999999888765321 1 2238889987633 33332211
Q ss_pred CCccccccccCCEEEEEEecCC
Q 002209 585 DQTEGDLYLNQLKILTSKESKT 606 (953)
Q Consensus 585 ~~~~~~~s~dg~~l~~~~~~~~ 606 (953)
+..-..|+|||++++....++.
T Consensus 356 ~tt~~eW~PdGe~flTATTaPR 377 (566)
T KOG2315|consen 356 NTTVFEWSPDGEYFLTATTAPR 377 (566)
T ss_pred CceEEEEcCCCcEEEEEecccc
Confidence 1112479999998886655543
|
|
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-06 Score=95.81 Aligned_cols=244 Identities=16% Similarity=0.112 Sum_probs=158.2
Q ss_pred cCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCc
Q 002209 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (953)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (953)
.-+++.|..++.+.||. +-..--.|... ++.|+|++.||--..+..+ +.-+|+ ...+-.|+.+||
T Consensus 43 ~~gy~~E~h~V~T~DgY-iL~lhRIp~~~-----~~rp~Vll~HGLl~sS~~W---v~n~p~------~sLaf~LadaGY 107 (403)
T KOG2624|consen 43 KYGYPVEEHEVTTEDGY-ILTLHRIPRGK-----KKRPVVLLQHGLLASSSSW---VLNGPE------QSLAFLLADAGY 107 (403)
T ss_pred HcCCceEEEEEEccCCe-EEEEeeecCCC-----CCCCcEEEeeccccccccc---eecCcc------ccHHHHHHHcCC
Confidence 34577899999999998 44444456542 4589999999943222211 111111 223446889999
Q ss_pred EEEEcCCCCCCCCCCh-----------hhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 714 AILGGPTTPIIGEGDE-----------EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 714 ~V~~~~~~~~~G~G~~-----------~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
-|...+.||. -+++. +..-.+-+-...|+-+.++++.+.- ..+++..+|||.|+.....++...|+
T Consensus 108 DVWLgN~RGn-~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~ 184 (403)
T KOG2624|consen 108 DVWLGNNRGN-TYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPE 184 (403)
T ss_pred ceeeecCcCc-ccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHhc--cccceEEEEEEccchhheehhcccch
Confidence 9999888763 33332 2223345567899999999998752 45799999999999999999988865
Q ss_pred ---cccEEEEcccCCCCCCC------------------CcCccc------c-----------cch---------------
Q 002209 783 ---LFCCGIARSGAYNRTLT------------------PFGFQN------E-----------DRT--------------- 809 (953)
Q Consensus 783 ---~~~a~v~~~~~~d~~~~------------------~~~~~~------~-----------~~~--------------- 809 (953)
+++..++.+|+.-.... ...+.. . ...
T Consensus 185 ~~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~ 264 (403)
T KOG2624|consen 185 YNKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLV 264 (403)
T ss_pred hhhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHc
Confidence 68888888886422100 000000 0 000
Q ss_pred -----h------------------------h-----------------hhHHHHHh-cCcccccCCCCCcEEEEEeCCCC
Q 002209 810 -----L------------------------W-----------------EATSTYVE-MSPFMSANKLKKPILLVHGEEDN 842 (953)
Q Consensus 810 -----~------------------------~-----------------~~~~~~~~-~sp~~~~~~i~~P~Li~~G~~D~ 842 (953)
. | .+...|.. ..|...+.+++.|+.+..|.+|.
T Consensus 265 G~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~ 344 (403)
T KOG2624|consen 265 GWNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDW 344 (403)
T ss_pred CcchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCcc
Confidence 0 0 01111111 13455677889999999999999
Q ss_pred CCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCC--CcccHHHHHHHHHHHHHHhc
Q 002209 843 NSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA--ARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 843 ~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~--~~~~~~~~~~~i~~fl~~~l 898 (953)
.+. +++...+...+..... ...+.+++-+|.-. .....+.++..|++.+.++.
T Consensus 345 l~~--~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 345 LAD--PEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred cCC--HHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 998 8988888777766544 33444788888632 34456788899999988764
|
|
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-06 Score=97.06 Aligned_cols=88 Identities=13% Similarity=0.014 Sum_probs=62.0
Q ss_pred chHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH----HH
Q 002209 702 STSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN----LL 777 (953)
Q Consensus 702 ~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~----~a 777 (953)
..+.++|+++||.|+.++- ..-+.+...-. ++..+..+.+|++.+.+.- ..++|.++|+|+||.+++. ++
T Consensus 237 ~SlVr~lv~qG~~VflIsW---~nP~~~~r~~~-ldDYv~~i~~Ald~V~~~t--G~~~vnl~GyC~GGtl~a~~~a~~a 310 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISW---RNPDKAHREWG-LSTYVDALKEAVDAVRAIT--GSRDLNLLGACAGGLTCAALVGHLQ 310 (560)
T ss_pred chHHHHHHHcCCeEEEEeC---CCCChhhcCCC-HHHHHHHHHHHHHHHHHhc--CCCCeeEEEECcchHHHHHHHHHHH
Confidence 3567889999999999544 22222222111 2333457888888887752 3568999999999999986 67
Q ss_pred HhCCC-cccEEEEcccCCC
Q 002209 778 AHAPH-LFCCGIARSGAYN 795 (953)
Q Consensus 778 ~~~p~-~~~a~v~~~~~~d 795 (953)
+.+++ +++.++..+...|
T Consensus 311 A~~~~~~V~sltllatplD 329 (560)
T TIGR01839 311 ALGQLRKVNSLTYLVSLLD 329 (560)
T ss_pred hcCCCCceeeEEeeecccc
Confidence 77775 7999888777665
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.6e-06 Score=93.54 Aligned_cols=269 Identities=12% Similarity=0.073 Sum_probs=164.6
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCC
Q 002209 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (953)
Q Consensus 108 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~ 187 (953)
-..+..+.+|.|..-++..... .|.||+..+ .+ .+..++.
T Consensus 373 R~dVRsl~vS~d~~~~~Sga~~----------------------------------SikiWn~~t----~k--ciRTi~~ 412 (888)
T KOG0306|consen 373 RSDVRSLCVSSDSILLASGAGE----------------------------------SIKIWNRDT----LK--CIRTITC 412 (888)
T ss_pred hhheeEEEeecCceeeeecCCC----------------------------------cEEEEEccC----cc--eeEEecc
Confidence 3367788899888666555442 578998843 22 3333444
Q ss_pred CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 188 ~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
+ .+....|-|.++.|+... .++.|-++|+.+......+...++. +.+++-+||++.++....+..
T Consensus 413 ~-y~l~~~Fvpgd~~Iv~G~---------k~Gel~vfdlaS~~l~Eti~AHdga----IWsi~~~pD~~g~vT~saDkt- 477 (888)
T KOG0306|consen 413 G-YILASKFVPGDRYIVLGT---------KNGELQVFDLASASLVETIRAHDGA----IWSISLSPDNKGFVTGSADKT- 477 (888)
T ss_pred c-cEEEEEecCCCceEEEec---------cCCceEEEEeehhhhhhhhhccccc----eeeeeecCCCCceEEecCCcE-
Confidence 3 677788999999888743 3556667777776544333322322 667888899998886622211
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc----CCce---------eEeCCCCcc
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL----DGTV---------KEIGPPAVY 334 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~----~g~~---------~~l~~~~~~ 334 (953)
-.+|-.-+ .|.. +.|.-...+
T Consensus 478 ----------------------------------------------VkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddv 511 (888)
T KOG0306|consen 478 ----------------------------------------------VKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDV 511 (888)
T ss_pred ----------------------------------------------EEEEeEEEEeccCcccceeeeeccceEEeccccE
Confidence 11222111 1221 112222567
Q ss_pred cccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002209 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (953)
Q Consensus 335 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i 413 (953)
-.+.+||||++|+++-.++ ++.++-+++=.. -.|..+.. -+..+..|||++.|
T Consensus 512 L~v~~Spdgk~LaVsLLdn-------------TVkVyflDtlKFflsLYGHkL-------------PV~smDIS~DSkli 565 (888)
T KOG0306|consen 512 LCVSVSPDGKLLAVSLLDN-------------TVKVYFLDTLKFFLSLYGHKL-------------PVLSMDISPDSKLI 565 (888)
T ss_pred EEEEEcCCCcEEEEEeccC-------------eEEEEEecceeeeeeeccccc-------------ceeEEeccCCcCeE
Confidence 7889999999999987554 677777764322 23444322 23678899999976
Q ss_pred eEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCC
Q 002209 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV 493 (953)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~ 493 (953)
+-. +....+-+|.+ .=|.-.+-+..++..+.++.|-|+ ..++|+...++ .+..+|.+. .
T Consensus 566 vTg-------------SADKnVKiWGL--dFGDCHKS~fAHdDSvm~V~F~P~-~~~FFt~gKD~---kvKqWDg~k--F 624 (888)
T KOG0306|consen 566 VTG-------------SADKNVKIWGL--DFGDCHKSFFAHDDSVMSVQFLPK-THLFFTCGKDG---KVKQWDGEK--F 624 (888)
T ss_pred Eec-------------cCCCceEEecc--ccchhhhhhhcccCceeEEEEccc-ceeEEEecCcc---eEEeechhh--h
Confidence 654 33334545543 114445667788888899999995 45666665442 465666444 2
Q ss_pred CcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 494 APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
+..+..+.+...++. ++.+|+|.+++..+.+
T Consensus 625 e~iq~L~~H~~ev~c------Lav~~~G~~vvs~shD 655 (888)
T KOG0306|consen 625 EEIQKLDGHHSEVWC------LAVSPNGSFVVSSSHD 655 (888)
T ss_pred hhheeeccchheeee------eEEcCCCCeEEeccCC
Confidence 334445566666665 7889999999877643
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.3e-07 Score=96.71 Aligned_cols=237 Identities=14% Similarity=0.138 Sum_probs=144.7
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCC
Q 002209 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (953)
Q Consensus 108 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~ 187 (953)
...+..++||.+|..++.++.+ ..|.+||+++ |+. +..+..
T Consensus 258 ~k~Vrd~~~s~~g~~fLS~sfD---------------------------------~~lKlwDtET----G~~--~~~f~~ 298 (503)
T KOG0282|consen 258 RKPVRDASFNNCGTSFLSASFD---------------------------------RFLKLWDTET----GQV--LSRFHL 298 (503)
T ss_pred hhhhhhhhccccCCeeeeeecc---------------------------------eeeeeecccc----ceE--EEEEec
Confidence 3457788899999988887765 3678999865 332 222444
Q ss_pred CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 188 ~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
+.....+.+.||+..+.++.. .+..|..+|..+|+..+-....-.. +..+.|-++|++++.++.+
T Consensus 299 ~~~~~cvkf~pd~~n~fl~G~--------sd~ki~~wDiRs~kvvqeYd~hLg~----i~~i~F~~~g~rFissSDd--- 363 (503)
T KOG0282|consen 299 DKVPTCVKFHPDNQNIFLVGG--------SDKKIRQWDIRSGKVVQEYDRHLGA----ILDITFVDEGRRFISSSDD--- 363 (503)
T ss_pred CCCceeeecCCCCCcEEEEec--------CCCcEEEEeccchHHHHHHHhhhhh----eeeeEEccCCceEeeeccC---
Confidence 457788999999988877542 4678899999999865543333222 6678899999998866221
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCCCcc--cccccCCCCcE
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVY--TSLDPSPDEKY 345 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~--~~~~~SpDG~~ 345 (953)
..-.||-+...-..+.+.....+ ..+..+|.|++
T Consensus 364 --------------------------------------------ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~ 399 (503)
T KOG0282|consen 364 --------------------------------------------KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW 399 (503)
T ss_pred --------------------------------------------ccEEEEEcCCCccchhhcchhhccCcceecCCCCCe
Confidence 11223333222223333333222 35678999999
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
++..+.++ .|.++.+.-.. +++.....+. ..+.+..-.+.|||||+.|++.
T Consensus 400 ~~aQs~dN-------------~i~ifs~~~~~--r~nkkK~feG-----h~vaGys~~v~fSpDG~~l~SG--------- 450 (503)
T KOG0282|consen 400 FAAQSMDN-------------YIAIFSTVPPF--RLNKKKRFEG-----HSVAGYSCQVDFSPDGRTLCSG--------- 450 (503)
T ss_pred ehhhccCc-------------eEEEEeccccc--ccCHhhhhcc-----eeccCceeeEEEcCCCCeEEee---------
Confidence 99888654 56565543110 1111000000 0111222468999999988887
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCce-EEEEEecc
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA-LVYESWYK 477 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~-l~~~~~~~ 477 (953)
+..+.++.||- .+......+..++..+.++.|.|-... ++..++.+
T Consensus 451 ----dsdG~v~~wdw--kt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G 497 (503)
T KOG0282|consen 451 ----DSDGKVNFWDW--KTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDG 497 (503)
T ss_pred ----cCCccEEEeec--hhhhhhhccccCCcceEEEEecCCCcceeEecccCc
Confidence 66778999985 222233445566677788999998665 44444443
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.3e-06 Score=87.22 Aligned_cols=110 Identities=19% Similarity=0.214 Sum_probs=76.0
Q ss_pred CCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCC
Q 002209 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (953)
Q Consensus 186 ~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 265 (953)
+....+....|.+||..++..+- +...|.++|+++|...+|.....++ +..+.|||||.+|+.++.+
T Consensus 193 pgh~pVtsmqwn~dgt~l~tAS~--------gsssi~iWdpdtg~~~pL~~~glgg----~slLkwSPdgd~lfaAt~d- 259 (445)
T KOG2139|consen 193 PGHNPVTSMQWNEDGTILVTASF--------GSSSIMIWDPDTGQKIPLIPKGLGG----FSLLKWSPDGDVLFAATCD- 259 (445)
T ss_pred CCCceeeEEEEcCCCCEEeeccc--------CcceEEEEcCCCCCcccccccCCCc----eeeEEEcCCCCEEEEeccc-
Confidence 33347889999999998887542 4678889999999888886433333 7789999999999977221
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcC-CceeEeCCCCcccccccCCCCc
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD-GTVKEIGPPAVYTSLDPSPDEK 344 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~-g~~~~l~~~~~~~~~~~SpDG~ 344 (953)
+.-.||.-+-. -+.+.+...+.+....|||+|+
T Consensus 260 ----------------------------------------------avfrlw~e~q~wt~erw~lgsgrvqtacWspcGs 293 (445)
T KOG2139|consen 260 ----------------------------------------------AVFRLWQENQSWTKERWILGSGRVQTACWSPCGS 293 (445)
T ss_pred ----------------------------------------------ceeeeehhcccceecceeccCCceeeeeecCCCC
Confidence 11123322111 1333444446888999999999
Q ss_pred EEEEEEecCC
Q 002209 345 YILISSIHRP 354 (953)
Q Consensus 345 ~l~~~~~~~~ 354 (953)
+|+|+....+
T Consensus 294 fLLf~~sgsp 303 (445)
T KOG2139|consen 294 FLLFACSGSP 303 (445)
T ss_pred EEEEEEcCCc
Confidence 9999986654
|
|
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.5e-06 Score=84.78 Aligned_cols=111 Identities=23% Similarity=0.260 Sum_probs=71.8
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCC
Q 002209 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL 829 (953)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i 829 (953)
+.+...++.++.+|+|||+||.+++.++..+|+.|...++++|... |.+...+....-.... .
T Consensus 128 Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlW---------------w~n~~~l~~~~~~~~~-~- 190 (264)
T COG2819 128 IEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLW---------------WHNEAILREIESLKLL-K- 190 (264)
T ss_pred HhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhh---------------hCCHHHhccccccccC-C-
Confidence 4445778999999999999999999999999999999999998532 2233333332222222 2
Q ss_pred CCcEEEE--EeCCCCCCCCc----hHHHHHHHHHHHh-CCCcEEEEEeCCCCccC
Q 002209 830 KKPILLV--HGEEDNNSGTL----TMQSDRFFNALKG-HGALCRLVILPFESHGY 877 (953)
Q Consensus 830 ~~P~Li~--~G~~D~~v~~~----~~~~~~~~~~l~~-~g~~~~~~~~~~~~H~~ 877 (953)
..++++. .|+.|.....- ..++.+....+++ .|....+..+|+++|+-
T Consensus 191 ~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~H~~ 245 (264)
T COG2819 191 TKRICLYIGSGELDSSRSIRMAENKQEAAELSSLLEKRTGARLVFQEEPLEHHGS 245 (264)
T ss_pred CcceEEEecccccCcchhhhhhhHHHHHHHHHHHHhhccCCceEecccccccccc
Confidence 3444444 44444421100 2334444455555 77888899999888864
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-05 Score=96.02 Aligned_cols=109 Identities=13% Similarity=0.195 Sum_probs=68.6
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
+....+||||++|||+.+. .++... +|++.|+.+ |..- ...+. ..
T Consensus 129 l~~~~~Spdg~~la~~~d~----------------------~G~E~~------~l~v~d~~t-g~~l-~~~i~---~~-- 173 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDF----------------------LSRRQY------GIRFRNLET-GNWY-PELLD---NV-- 173 (686)
T ss_pred EeEEEECCCCCEEEEEecC----------------------CCcEEE------EEEEEECCC-CCCC-Ccccc---Cc--
Confidence 4567899999999999874 233333 789999853 3110 22222 11
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCC--ceeecccCCCccccccccceEEec-CCeEEEEE
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSPDIYLNAIFDNFVWVN-NSTLLVCT 261 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~~~~wsp-Dg~~l~~~ 261 (953)
.....|++||+.|+|+.... ......+||++++.++ +.+.|....... .....|.+ |++.+++.
T Consensus 174 ~~~~~w~~D~~~~~y~~~~~---~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~----~~~~~~~s~d~~~l~i~ 240 (686)
T PRK10115 174 EPSFVWANDSWTFYYVRKHP---VTLLPYQVWRHTIGTPASQDELVYEEKDDT----FYVSLHKTTSKHYVVIH 240 (686)
T ss_pred ceEEEEeeCCCEEEEEEecC---CCCCCCEEEEEECCCChhHCeEEEeeCCCC----EEEEEEEcCCCCEEEEE
Confidence 24589999999999987622 1123478999999988 455565533321 22233444 88877754
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.3e-05 Score=81.62 Aligned_cols=185 Identities=15% Similarity=0.107 Sum_probs=102.1
Q ss_pred cceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhh
Q 002209 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (953)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (953)
...|.++|.++.+...-....... .....++|||+++++..
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~----h~~~~~s~Dgr~~yv~~----------------------------------- 55 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAP----HAGLKFSPDGRYLYVAN----------------------------------- 55 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTE----EEEEE-TT-SSEEEEEE-----------------------------------
T ss_pred CCEEEEEECCCCeEEEEEcCCCCc----eeEEEecCCCCEEEEEc-----------------------------------
Confidence 679999999887754433322211 23567899999988761
Q ss_pred hcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC
Q 002209 298 LLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (953)
Q Consensus 298 ~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g 375 (953)
..+.|.++|+ +++ .+.+..+....++++|||||+|+.+... ++++.++|..+
T Consensus 56 --------------rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~------------~~~v~v~D~~t 109 (369)
T PF02239_consen 56 --------------RDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYE------------PGTVSVIDAET 109 (369)
T ss_dssp --------------TTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEE------------TTEEEEEETTT
T ss_pred --------------CCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecC------------CCceeEecccc
Confidence 1246779999 664 4555555667789999999999877633 34888999876
Q ss_pred ce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe--
Q 002209 376 IF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-- 452 (953)
Q Consensus 376 ~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~-- 452 (953)
.+ .+.+......... ...++..+.-+|++...++. ....++++++|. .+. +.....
T Consensus 110 le~v~~I~~~~~~~~~------~~~Rv~aIv~s~~~~~fVv~------------lkd~~~I~vVdy--~d~-~~~~~~~i 168 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDG------PESRVAAIVASPGRPEFVVN------------LKDTGEIWVVDY--SDP-KNLKVTTI 168 (369)
T ss_dssp --EEEEEE--EE-TTT------S---EEEEEE-SSSSEEEEE------------ETTTTEEEEEET--TTS-SCEEEEEE
T ss_pred ccceeecccccccccc------cCCCceeEEecCCCCEEEEE------------EccCCeEEEEEe--ccc-cccceeee
Confidence 44 3444432111100 01122345667776644333 133568999986 222 222221
Q ss_pred ecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 453 KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 453 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
..........|+|||++++.+.+... .+-++|+.++
T Consensus 169 ~~g~~~~D~~~dpdgry~~va~~~sn---~i~viD~~~~ 204 (369)
T PF02239_consen 169 KVGRFPHDGGFDPDGRYFLVAANGSN---KIAVIDTKTG 204 (369)
T ss_dssp E--TTEEEEEE-TTSSEEEEEEGGGT---EEEEEETTTT
T ss_pred cccccccccccCcccceeeecccccc---eeEEEeeccc
Confidence 12222345789999999877655432 6777777664
|
... |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.8e-06 Score=95.67 Aligned_cols=165 Identities=14% Similarity=0.086 Sum_probs=98.8
Q ss_pred eEEEEEc-CCcee-EeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ceEEEeccCCCcccC
Q 002209 315 QLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDI 390 (953)
Q Consensus 315 ~l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~ 390 (953)
.+.+|.. +++.. .|+.. -..+..+++.+|+++|+.+.+. .|.+.+++. +..+.+..+.
T Consensus 77 tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~-------------~vK~~~~~D~s~~~~lrgh~----- 138 (933)
T KOG1274|consen 77 TVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDT-------------AVKLLNLDDSSQEKVLRGHD----- 138 (933)
T ss_pred eEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCce-------------eEEEEeccccchheeecccC-----
Confidence 3445555 44333 22222 4566789999999999998554 677777763 3444443332
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec--------ccccCCee
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--------DLRYGGIS 462 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~--------~~~~~~~~ 462 (953)
.-+..+.+.|.|+.+|.. +..+.|++|++ .++.....++.. ..-+..++
T Consensus 139 --------apVl~l~~~p~~~fLAvs-------------s~dG~v~iw~~--~~~~~~~tl~~v~k~n~~~~s~i~~~~a 195 (933)
T KOG1274|consen 139 --------APVLQLSYDPKGNFLAVS-------------SCDGKVQIWDL--QDGILSKTLTGVDKDNEFILSRICTRLA 195 (933)
T ss_pred --------CceeeeeEcCCCCEEEEE-------------ecCceEEEEEc--ccchhhhhcccCCccccccccceeeeee
Confidence 233578899999987776 55678999996 222222223221 11234589
Q ss_pred eccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 463 WCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 463 ~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
|+|+|..+++..-++ .+.+++..+.+.. ..+-+......+.. ++|||.|++||....+
T Consensus 196 W~Pk~g~la~~~~d~----~Vkvy~r~~we~~-f~Lr~~~~ss~~~~-----~~wsPnG~YiAAs~~~ 253 (933)
T KOG1274|consen 196 WHPKGGTLAVPPVDN----TVKVYSRKGWELQ-FKLRDKLSSSKFSD-----LQWSPNGKYIAASTLD 253 (933)
T ss_pred ecCCCCeEEeeccCC----eEEEEccCCceeh-eeecccccccceEE-----EEEcCCCcEEeeeccC
Confidence 999977766654443 4566666665322 22222222222222 8999999999988753
|
|
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.3e-06 Score=82.25 Aligned_cols=207 Identities=15% Similarity=0.186 Sum_probs=109.7
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
+.-.+|.+|..|--+|..-.+.+ .|+||+.-|.. . -.......+.+|+.+||.|+.+|....
T Consensus 7 i~~~~~~~I~vwet~P~~~~~~~---~~tiliA~Gf~-r--------------rmdh~agLA~YL~~NGFhViRyDsl~H 68 (294)
T PF02273_consen 7 IRLEDGRQIRVWETRPKNNEPKR---NNTILIAPGFA-R--------------RMDHFAGLAEYLSANGFHVIRYDSLNH 68 (294)
T ss_dssp EEETTTEEEEEEEE---TTS------S-EEEEE-TT--G--------------GGGGGHHHHHHHHTTT--EEEE---B-
T ss_pred eEcCCCCEEEEeccCCCCCCccc---CCeEEEecchh-H--------------HHHHHHHHHHHHhhCCeEEEecccccc
Confidence 34468999999999998744433 78999887731 1 111223457789999999999666544
Q ss_pred CCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC----
Q 002209 724 IGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---- 799 (953)
Q Consensus 724 ~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~---- 799 (953)
.|.......+-.+.....|+..+++||.+.+ ..+++++--|.-|-+|..+++.- + ..-+|...|++|...+
T Consensus 69 vGlSsG~I~eftms~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~i-~-lsfLitaVGVVnlr~TLe~a 143 (294)
T PF02273_consen 69 VGLSSGDINEFTMSIGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAADI-N-LSFLITAVGVVNLRDTLEKA 143 (294)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTTS----SEEEEES--S-HHHHHHHH
T ss_pred ccCCCCChhhcchHHhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhcc-C-cceEEEEeeeeeHHHHHHHH
Confidence 4443322334446678899999999999776 36899999999999999999854 4 6666777788773221
Q ss_pred ---C-cCcc-----cc----c----chhhhhHHHHH-hc----CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHH
Q 002209 800 ---P-FGFQ-----NE----D----RTLWEATSTYV-EM----SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (953)
Q Consensus 800 ---~-~~~~-----~~----~----~~~~~~~~~~~-~~----sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~ 857 (953)
+ ..++ .. . ...|- .+.++ .+ |.+..++++.+|++.+++.+|.-|. ..+..++...
T Consensus 144 l~~Dyl~~~i~~lp~dldfeGh~l~~~vFv-~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~--q~eV~~~~~~ 220 (294)
T PF02273_consen 144 LGYDYLQLPIEQLPEDLDFEGHNLGAEVFV-TDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVK--QSEVEELLDN 220 (294)
T ss_dssp HSS-GGGS-GGG--SEEEETTEEEEHHHHH-HHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS---HHHHHHHHTT
T ss_pred hccchhhcchhhCCCcccccccccchHHHH-HHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCcccc--HHHHHHHHHh
Confidence 0 0000 00 0 00000 00010 11 3345678889999999999998876 6666666554
Q ss_pred HHhCCCcEEEEEeCCCCccCC
Q 002209 858 LKGHGALCRLVILPFESHGYA 878 (953)
Q Consensus 858 l~~~g~~~~~~~~~~~~H~~~ 878 (953)
+.. ..+++..++|..|.+.
T Consensus 221 ~~s--~~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 221 INS--NKCKLYSLPGSSHDLG 239 (294)
T ss_dssp -TT----EEEEEETT-SS-TT
T ss_pred cCC--CceeEEEecCccchhh
Confidence 433 3588999999999884
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.9e-06 Score=87.70 Aligned_cols=203 Identities=14% Similarity=0.118 Sum_probs=118.5
Q ss_pred CCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEEcCCCCCCCCCChhhhh-hhHHHHHHHHHH
Q 002209 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEA 745 (953)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~ 745 (953)
.+.|.++++||-. |....|. .....|+. .|--|+..|. +-+|.+..-. .....+.+|+..
T Consensus 50 ~~~Pp~i~lHGl~-----------GS~~Nw~----sv~k~Ls~~l~~~v~~vd~---RnHG~Sp~~~~h~~~~ma~dv~~ 111 (315)
T KOG2382|consen 50 ERAPPAIILHGLL-----------GSKENWR----SVAKNLSRKLGRDVYAVDV---RNHGSSPKITVHNYEAMAEDVKL 111 (315)
T ss_pred CCCCceEEecccc-----------cCCCCHH----HHHHHhcccccCceEEEec---ccCCCCccccccCHHHHHHHHHH
Confidence 3478899999931 1111221 22334443 3556666333 4455553321 225778888888
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHH-HHHHHHHHhCCCcccEEEEc--cc-CCCCCC------------CCcC-------
Q 002209 746 AVEEVVRRGVAHPSKIAVGGHSYGA-FMTANLLAHAPHLFCCGIAR--SG-AYNRTL------------TPFG------- 802 (953)
Q Consensus 746 ~~~~l~~~~~~d~~~i~l~G~S~GG-~~a~~~a~~~p~~~~a~v~~--~~-~~d~~~------------~~~~------- 802 (953)
.++....... ..++.|+|||||| .+++..+...|+.+.-+|.. +| .+.... .+..
T Consensus 112 Fi~~v~~~~~--~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~r 189 (315)
T KOG2382|consen 112 FIDGVGGSTR--LDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGR 189 (315)
T ss_pred HHHHcccccc--cCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccH
Confidence 8888765433 3589999999999 77777778888876555543 23 111000 0000
Q ss_pred -----------------------cc---cccchhhh-----hHHHHHh---cCccccc--CCCCCcEEEEEeCCCCCCCC
Q 002209 803 -----------------------FQ---NEDRTLWE-----ATSTYVE---MSPFMSA--NKLKKPILLVHGEEDNNSGT 846 (953)
Q Consensus 803 -----------------------~~---~~~~~~~~-----~~~~~~~---~sp~~~~--~~i~~P~Li~~G~~D~~v~~ 846 (953)
+. ......|. -.+.+.+ .+.-..+ .-...|+|+++|.++..|+
T Consensus 190 ke~~~~l~~~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~- 268 (315)
T KOG2382|consen 190 KEALKSLIEVGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVP- 268 (315)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcC-
Confidence 00 00000111 0111111 1221111 4457899999999999998
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
.++-.++.+.+.. +++++++++||+.. .++.+.+.+-+.+|+.+.
T Consensus 269 -~~~~~~~~~~fp~----~e~~~ld~aGHwVh-~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 269 -DEHYPRMEKIFPN----VEVHELDEAGHWVH-LEKPEEFIESISEFLEEP 313 (315)
T ss_pred -hhHHHHHHHhccc----hheeecccCCceee-cCCHHHHHHHHHHHhccc
Confidence 5555555444433 79999999999874 678889999999988764
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.6e-05 Score=79.15 Aligned_cols=276 Identities=17% Similarity=0.128 Sum_probs=143.4
Q ss_pred hhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeec
Q 002209 105 IVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQG 184 (953)
Q Consensus 105 ~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~ 184 (953)
+++.....++.+||||+.++....- ++ +. .+..-..-|-+||..+ +.....|.
T Consensus 32 mi~~g~~~~~~~spdgk~~y~a~T~-------------------~s-R~---~rG~RtDvv~~~D~~T---L~~~~EI~- 84 (342)
T PF06433_consen 32 MIDTGFLGNVALSPDGKTIYVAETF-------------------YS-RG---TRGERTDVVEIWDTQT---LSPTGEIE- 84 (342)
T ss_dssp EEEEESSEEEEE-TTSSEEEEEEEE-------------------EE-ET---TEEEEEEEEEEEETTT---TEEEEEEE-
T ss_pred EeecccCCceeECCCCCEEEEEEEE-------------------Ee-cc---ccccceeEEEEEecCc---CcccceEe-
Confidence 3344455678899999999865541 00 00 1111112356777633 11111221
Q ss_pred CCCC------CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEE
Q 002209 185 FPDG------AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (953)
Q Consensus 185 ~~~~------~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l 258 (953)
+|.. ........|.|||++++..-.. ...+-++|++.++...-...++ + ...+-+.+++ ..
T Consensus 85 iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP-------a~SVtVVDl~~~kvv~ei~~PG-C----~~iyP~~~~~-F~ 151 (342)
T PF06433_consen 85 IPPKPRAQVVPYKNMFALSADGKFLYVQNFTP-------ATSVTVVDLAAKKVVGEIDTPG-C----WLIYPSGNRG-FS 151 (342)
T ss_dssp ETTS-B--BS--GGGEEE-TTSSEEEEEEESS-------SEEEEEEETTTTEEEEEEEGTS-E----EEEEEEETTE-EE
T ss_pred cCCcchheecccccceEEccCCcEEEEEccCC-------CCeEEEEECCCCceeeeecCCC-E----EEEEecCCCc-eE
Confidence 2221 2456678999999999876544 7789999999887654433343 1 1122222322 11
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CCceeE----eCCC-
Q 002209 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKE----IGPP- 331 (953)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g~~~~----l~~~- 331 (953)
... +.+.+..+.+ +|+..+ +...
T Consensus 152 ~lC--------------------------------------------------~DGsl~~v~Ld~~Gk~~~~~t~~F~~~ 181 (342)
T PF06433_consen 152 MLC--------------------------------------------------GDGSLLTVTLDADGKEAQKSTKVFDPD 181 (342)
T ss_dssp EEE--------------------------------------------------TTSCEEEEEETSTSSEEEEEEEESSTT
T ss_pred EEe--------------------------------------------------cCCceEEEEECCCCCEeEeeccccCCC
Confidence 111 2334445555 454332 1111
Q ss_pred --CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccC
Q 002209 332 --AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 332 --~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
..+..++++.++.+++|.+ |.++|+..|+.+...+.................-.+|..-+++.+.
T Consensus 182 ~dp~f~~~~~~~~~~~~~F~S-------------y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 182 DDPLFEHPAYSRDGGRLYFVS-------------YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp TS-B-S--EEETTTTEEEEEB-------------TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred CcccccccceECCCCeEEEEe-------------cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc
Confidence 2334566777888888887 4559999999877655443322111000001112234445778777
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCC
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
..+++...+.... + .-..+...||++|+ .++....++. .+..+.++..|.|.+-++|+...... .|+++|+.
T Consensus 249 ~~rlyvLMh~g~~--g-sHKdpgteVWv~D~--~t~krv~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~--~l~v~D~~ 320 (342)
T PF06433_consen 249 SGRLYVLMHQGGE--G-SHKDPGTEVWVYDL--KTHKRVARIP-LEHPIDSIAVSQDDKPLLYALSAGDG--TLDVYDAA 320 (342)
T ss_dssp TTEEEEEEEE--T--T--TTS-EEEEEEEET--TTTEEEEEEE-EEEEESEEEEESSSS-EEEEEETTTT--EEEEEETT
T ss_pred cCeEEEEecCCCC--C-CccCCceEEEEEEC--CCCeEEEEEe-CCCccceEEEccCCCcEEEEEcCCCC--eEEEEeCc
Confidence 7666666553322 1 11234558999996 3332233332 23446689999999988887655433 79999998
Q ss_pred CC
Q 002209 490 SK 491 (953)
Q Consensus 490 ~~ 491 (953)
++
T Consensus 321 tG 322 (342)
T PF06433_consen 321 TG 322 (342)
T ss_dssp T-
T ss_pred CC
Confidence 86
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4e-07 Score=95.56 Aligned_cols=214 Identities=20% Similarity=0.216 Sum_probs=120.7
Q ss_pred eEEEEEEcC-CCcEEEEEEEcCCCCCC-CCCCCccEEEEeCCC-CCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEE
Q 002209 639 KELIKYQRK-DGVQLSATLYLPPGYDP-SKDGPLPCLFWSYPG-EFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (953)
Q Consensus 639 ~~~~~~~~~-dg~~~~~~l~~P~~~~~-~~~~~~P~vv~~hGg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (953)
...+++... .+.++...+++|..... -..+++|+|++.||- +. ...+ ...+..|++.||+|
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~---------------~~~f-~~~A~~lAs~Gf~V 101 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY---------------VTGF-AWLAEHLASYGFVV 101 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCCC---------------ccch-hhhHHHHhhCceEE
Confidence 445555433 35678889999876432 011469999999993 21 1111 13466789999999
Q ss_pred EEcCCCCCCCCCChhh--h-----hhhHHHHHHHHHHHHHHHHHc---C----CCCCCcEEEEEeChHHHHHHHHHHhCC
Q 002209 716 LGGPTTPIIGEGDEEA--N-----DRFVEQLVACAEAAVEEVVRR---G----VAHPSKIAVGGHSYGAFMTANLLAHAP 781 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~--~-----~~~~~~~~~D~~~~~~~l~~~---~----~~d~~~i~l~G~S~GG~~a~~~a~~~p 781 (953)
..++.-+..--+.... . ...+-....|+...+++|.+. + .+|..+|+++|||+||+.++.++....
T Consensus 102 a~~~hpgs~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 102 AAPDHPGSNAGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred EeccCCCcccccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 9966644322111100 0 011224467888888888776 4 588999999999999999999987553
Q ss_pred Cc---cc-EE----EEcc-cCCCCCCCCcCcccccchhhhhHHHHHhcC----------cc-------cccCCCCCcEEE
Q 002209 782 HL---FC-CG----IARS-GAYNRTLTPFGFQNEDRTLWEATSTYVEMS----------PF-------MSANKLKKPILL 835 (953)
Q Consensus 782 ~~---~~-a~----v~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~s----------p~-------~~~~~i~~P~Li 835 (953)
+. .+ |. ++.. +..+. ....+....|.....+...+ |. .-+.+++.|+++
T Consensus 182 ~~~~~~~~C~~~~~~~~~~~~~~~-----~~l~q~~av~~~~~~~~~rDpriravvA~~p~~~~~Fg~tgl~~v~~P~~~ 256 (365)
T COG4188 182 DAEALLQHCESASRICLDPPGLNG-----RLLNQCAAVWLPRQAYDLRDPRIRAVVAINPALGMIFGTTGLVKVTDPVLL 256 (365)
T ss_pred cHHHHHHHhhhhhhcccCCCCcCh-----hhhccccccccchhhhccccccceeeeeccCCcccccccccceeeecceee
Confidence 31 11 11 0000 00000 00001111111112222111 11 224567899999
Q ss_pred EEeCCCCCCCCchHH-HHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002209 836 VHGEEDNNSGTLTMQ-SDRFFNALKGHGALCRLVILPFESHGY 877 (953)
Q Consensus 836 ~~G~~D~~v~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (953)
+.|..|...| +.. ....+..|. +....+.+.|++.|.-
T Consensus 257 ~a~s~D~~aP--~~~~~~~~f~~l~--g~~k~~~~vp~a~h~s 295 (365)
T COG4188 257 AAGSADGFAP--PVTEQIRPFGYLP--GALKYLRLVPGATHFS 295 (365)
T ss_pred ecccccccCC--cccccccccccCC--cchhheeecCCCcccc
Confidence 9999999766 333 334444443 3334677889999964
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-05 Score=77.58 Aligned_cols=259 Identities=16% Similarity=0.096 Sum_probs=143.9
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
.....||+-|.+||... .++.|.++|..+-.+-++....-.. +.+++||+||+.|+.++
T Consensus 26 a~~~~Fs~~G~~lAvGc---------~nG~vvI~D~~T~~iar~lsaH~~p----i~sl~WS~dgr~LltsS-------- 84 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGC---------ANGRVVIYDFDTFRIARMLSAHVRP----ITSLCWSRDGRKLLTSS-------- 84 (405)
T ss_pred cceEEeccCcceeeeec---------cCCcEEEEEccccchhhhhhccccc----eeEEEecCCCCEeeeec--------
Confidence 56679999999999854 2557777777764443333322222 77999999999999662
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCCCcccccccCCCCcEEEE
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEKYILI 348 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~~~~~~~~~SpDG~~l~~ 348 (953)
....+-.+|+ .| -.+++.-+..+....|.|-.+..++
T Consensus 85 -----------------------------------------~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~v 123 (405)
T KOG1273|consen 85 -----------------------------------------RDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCV 123 (405)
T ss_pred -----------------------------------------CCceeEEEeccCCCceeEEEccCccceeeeccccCCeEE
Confidence 1134556777 66 3455544466777888885555544
Q ss_pred EEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (953)
+..-+ ..-++.++.....+.|...+..+ .+.. .+...|.+-|+.|+..
T Consensus 124 a~~~~------------~sp~vi~~s~~~h~~Lp~d~d~d-----ln~s---as~~~fdr~g~yIitG------------ 171 (405)
T KOG1273|consen 124 ATIME------------ESPVVIDFSDPKHSVLPKDDDGD-----LNSS---ASHGVFDRRGKYIITG------------ 171 (405)
T ss_pred EEEec------------CCcEEEEecCCceeeccCCCccc-----cccc---cccccccCCCCEEEEe------------
Confidence 44211 12334555543334443322111 0000 0112477778866655
Q ss_pred cccCCeEEEEecCCCCCCCce---EEeecccccCCeeeccCCceEEEEEecccCceEEEEEc-C--CCCCCCcEEeecCC
Q 002209 429 VTPRDIIYTQQAEPVQGEGPE---ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS-P--GSKDVAPRILFDRS 502 (953)
Q Consensus 429 ~~~~~~l~~~d~~~~~g~~~~---~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d-~--~~~~~~~~~~~~~~ 502 (953)
..++.+.++++ .+-+.+ +++. -..+.++.++..|+.|++...+.. .|.|-+. + .+..+++... ..
T Consensus 172 -tsKGkllv~~a---~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRv--IR~ye~~di~~~~r~~e~e~~--~K 242 (405)
T KOG1273|consen 172 -TSKGKLLVYDA---ETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRV--IRTYEISDIDDEGRDGEVEPE--HK 242 (405)
T ss_pred -cCcceEEEEec---chheeeeeeeech-heeeeEEEEeccCcEEEEecCCce--EEEEehhhhcccCccCCcChh--HH
Confidence 45667888885 222111 1111 234667889999999888765432 2444332 1 1111111110 11
Q ss_pred CccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCc
Q 002209 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (953)
Q Consensus 503 ~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~ 572 (953)
.+++.+.-.--...||.||.++...... .-.||+|....|.+.++..+..
T Consensus 243 ~qDvVNk~~Wk~ccfs~dgeYv~a~s~~--------------------aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 243 LQDVVNKLQWKKCCFSGDGEYVCAGSAR--------------------AHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred HHHHHhhhhhhheeecCCccEEEecccc--------------------ceeEEEEecCCcceeeeecCCc
Confidence 1111110000115688999988766521 2249999999999999887765
|
|
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.3e-07 Score=98.49 Aligned_cols=128 Identities=22% Similarity=0.175 Sum_probs=85.2
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcC-cEEEEcCCCC-CCCCCCh
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG-FAILGGPTTP-IIGEGDE 729 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G-~~V~~~~~~~-~~G~G~~ 729 (953)
++..+|.|+ .+. .+.|||||+|||.+..+..+ ...+ ....|+++| ++||.++|+- -.|+=.-
T Consensus 80 L~LNIwaP~--~~a--~~~PVmV~IHGG~y~~Gs~s----------~~~y--dgs~La~~g~vVvVSvNYRLG~lGfL~~ 143 (491)
T COG2272 80 LYLNIWAPE--VPA--EKLPVMVYIHGGGYIMGSGS----------EPLY--DGSALAARGDVVVVSVNYRLGALGFLDL 143 (491)
T ss_pred eeEEeeccC--CCC--CCCcEEEEEeccccccCCCc----------cccc--ChHHHHhcCCEEEEEeCcccccceeeeh
Confidence 666788898 222 34899999999865443221 1111 134688988 9999977752 2332110
Q ss_pred --hh--hhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccCCC
Q 002209 730 --EA--NDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (953)
Q Consensus 730 --~~--~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~d 795 (953)
.. ......-.+.|++.+++|+.++ -.-|+++|.|+|+|.||+.++.+++.. ..+|+-+|+.+|...
T Consensus 144 ~~~~~~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 144 SSLDTEDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred hhccccccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 00 0011124588999999999875 346999999999999999998887752 136888888887653
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.1e-06 Score=88.91 Aligned_cols=225 Identities=16% Similarity=0.210 Sum_probs=131.2
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..+.|.|+|++|+..+. .|...|| +..+=.-..+....+. .+....||++|.+++.. +..
T Consensus 98 ~V~~v~WtPeGRRLltgs~-------SGEFtLW--Ng~~fnFEtilQaHDs----~Vr~m~ws~~g~wmiSg--D~g--- 159 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQ-------SGEFTLW--NGTSFNFETILQAHDS----PVRTMKWSHNGTWMISG--DKG--- 159 (464)
T ss_pred ceeeEEEcCCCceeEeecc-------cccEEEe--cCceeeHHHHhhhhcc----cceeEEEccCCCEEEEc--CCC---
Confidence 5788999999999998664 3355665 3211111112121222 27789999999999854 111
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCC-C-CcccccccCCCCcEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP-P-AVYTSLDPSPDEKYIL 347 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~-~-~~~~~~~~SpDG~~l~ 347 (953)
+.-..|.-+.+- ++.+.. . ..++.++|||.....+
T Consensus 160 ------------------------------------------G~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~ 196 (464)
T KOG0284|consen 160 ------------------------------------------GMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFL 196 (464)
T ss_pred ------------------------------------------ceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeE
Confidence 111222222211 111111 1 5678899999655555
Q ss_pred EEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (953)
..+.++ .|.+||.. .++.+.|..+. .-++++.|.|....|+-.
T Consensus 197 t~SdDg-------------~ikiWdf~~~kee~vL~GHg-------------wdVksvdWHP~kgLiasg---------- 240 (464)
T KOG0284|consen 197 TCSDDG-------------TIKIWDFRMPKEERVLRGHG-------------WDVKSVDWHPTKGLIASG---------- 240 (464)
T ss_pred EecCCC-------------eEEEEeccCCchhheeccCC-------------CCcceeccCCccceeEEc----------
Confidence 555343 89999986 55666665432 235789999976544443
Q ss_pred cccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccc
Q 002209 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDV 506 (953)
Q Consensus 427 ~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 506 (953)
+..+.|-+|| |.+|...-.+..+...+..+.|+|+|.+|+..+.+. .+.++|..+- +..........++
T Consensus 241 ---skDnlVKlWD--prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~----~~kv~DiR~m--kEl~~~r~Hkkdv 309 (464)
T KOG0284|consen 241 ---SKDNLVKLWD--PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ----SCKVFDIRTM--KELFTYRGHKKDV 309 (464)
T ss_pred ---cCCceeEeec--CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc----eEEEEehhHh--HHHHHhhcchhhh
Confidence 3445678888 466655555667777888999999999998876554 3444454321 1122223333333
Q ss_pred cCCCCCCCeEeccCCCEEEEEe
Q 002209 507 YSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 507 ~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.. +.|+|=-.-|+...
T Consensus 310 ~~------~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 310 TS------LTWHPLNESLFTSG 325 (464)
T ss_pred ee------eccccccccceeec
Confidence 33 66777666555443
|
|
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.5e-07 Score=107.40 Aligned_cols=127 Identities=23% Similarity=0.263 Sum_probs=81.9
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC-CCCC---C
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP-IIGE---G 727 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~-~~G~---G 727 (953)
++..+|.|....... ++||+||+|||.+..+.. ... .......++.++++||.++||- ..|+ +
T Consensus 109 L~LnI~~P~~~~~~~--~lPV~v~ihGG~f~~G~~---------~~~--~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~ 175 (535)
T PF00135_consen 109 LYLNIYTPSNASSNS--KLPVMVWIHGGGFMFGSG---------SFP--PYDGASLAASKDVIVVTINYRLGAFGFLSLG 175 (535)
T ss_dssp -EEEEEEETSSSSTT--SEEEEEEE--STTTSSCT---------TSG--GGHTHHHHHHHTSEEEEE----HHHHH-BSS
T ss_pred HHHhhhhcccccccc--ccceEEEeecccccCCCc---------ccc--cccccccccCCCEEEEEeccccccccccccc
Confidence 677899998754332 599999999986543321 011 1112335678999999988752 1221 1
Q ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccC
Q 002209 728 DEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGA 793 (953)
Q Consensus 728 ~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~ 793 (953)
..... .+...+.|+..|++|+.++ -.-|+++|-|+|+|.||..+..++... ..+|+.+|+.+|.
T Consensus 176 ~~~~~--~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 176 DLDAP--SGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp STTSH--BSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred ccccC--chhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 11111 2456789999999999885 236899999999999999998887753 2589999999984
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.1e-06 Score=92.11 Aligned_cols=198 Identities=15% Similarity=0.112 Sum_probs=115.6
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+-.++||-+ ..|+-.+- +..+.+|++...+...++.+.+- +..++|.|-....|++.
T Consensus 371 DILDlSWSKn-~fLLSSSM---------DKTVRLWh~~~~~CL~~F~Hndf-----VTcVaFnPvDDryFiSG------- 428 (712)
T KOG0283|consen 371 DILDLSWSKN-NFLLSSSM---------DKTVRLWHPGRKECLKVFSHNDF-----VTCVAFNPVDDRYFISG------- 428 (712)
T ss_pred hheecccccC-CeeEeccc---------cccEEeecCCCcceeeEEecCCe-----eEEEEecccCCCcEeec-------
Confidence 6888999954 46666442 34555566667788888777663 77889998766555441
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~ 347 (953)
.-| ..+.++++ +.++..-++- ..++.++++|||+..+
T Consensus 429 --------------------------------SLD---------~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~av 467 (712)
T KOG0283|consen 429 --------------------------------SLD---------GKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAV 467 (712)
T ss_pred --------------------------------ccc---------cceEEeecCcCeeEeehhhhhhheeEEeccCCceEE
Confidence 011 23444455 4444433333 7789999999999999
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEEE---eccCCCcccCCccccccccCccceeeccCCCC-ceEEEEeccCC
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE---LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS-TLYWAETQDGG 423 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~---l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~-i~~~~~~~~~~ 423 (953)
+.+. .+...+|+..+-.... |....... .....+.++.|.|-... ++..
T Consensus 468 IGt~-------------~G~C~fY~t~~lk~~~~~~I~~~~~Kk-------~~~~rITG~Q~~p~~~~~vLVT------- 520 (712)
T KOG0283|consen 468 IGTF-------------NGYCRFYDTEGLKLVSDFHIRLHNKKK-------KQGKRITGLQFFPGDPDEVLVT------- 520 (712)
T ss_pred EEEe-------------ccEEEEEEccCCeEEEeeeEeeccCcc-------ccCceeeeeEecCCCCCeEEEe-------
Confidence 8874 3477888877654332 22111110 01113556777764433 4444
Q ss_pred CcccccccCCeEEEEecCCCCCCCceEEeeccccc---CCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRY---GGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~---~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
+.+.+|.++|. ...+.....++..+. ....|+.||++|+.++.+. .+|+++.+.
T Consensus 521 ------SnDSrIRI~d~---~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs----~VYiW~~~~ 577 (712)
T KOG0283|consen 521 ------SNDSRIRIYDG---RDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS----WVYIWKNDS 577 (712)
T ss_pred ------cCCCceEEEec---cchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc----eEEEEeCCC
Confidence 44567888873 112222212222222 2368999999999998443 455555433
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.4e-06 Score=87.51 Aligned_cols=126 Identities=14% Similarity=0.060 Sum_probs=86.1
Q ss_pred ceEEEEEc-CCce-eEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCC
Q 002209 314 TQLVLVSL-DGTV-KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (953)
Q Consensus 314 ~~l~~~~~-~g~~-~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p 391 (953)
..|..+|. ++.. ..+..++.++++..|+||..|+..+.++ .+-+.|+.+.+++....-++...
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd-------------tl~viDlRt~eI~~~~sA~g~k~-- 386 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD-------------TLKVIDLRTKEIRQTFSAEGFKC-- 386 (459)
T ss_pred cceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC-------------ceeeeecccccEEEEeecccccc--
Confidence 34666776 5543 3344448899999999999998776443 78889999988887655433211
Q ss_pred ccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE-Eeecc--cccCCeeeccCCc
Q 002209 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-LHKLD--LRYGGISWCDDSL 468 (953)
Q Consensus 392 ~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~-l~~~~--~~~~~~~~SpDg~ 468 (953)
+ .......|||||.+++-. +..+.||+|++ .+++.+. +.... ..+.+++|+|-|+
T Consensus 387 ----a--sDwtrvvfSpd~~YvaAG-------------S~dgsv~iW~v---~tgKlE~~l~~s~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 387 ----A--SDWTRVVFSPDGSYVAAG-------------SADGSVYIWSV---FTGKLEKVLSLSTSNAAITSLSWNPSGS 444 (459)
T ss_pred ----c--cccceeEECCCCceeeec-------------cCCCcEEEEEc---cCceEEEEeccCCCCcceEEEEEcCCCc
Confidence 0 113457899999976655 55678999997 5555544 32222 2477899999999
Q ss_pred eEEEEEec
Q 002209 469 ALVYESWY 476 (953)
Q Consensus 469 ~l~~~~~~ 476 (953)
.|+.+...
T Consensus 445 ~Llsadk~ 452 (459)
T KOG0288|consen 445 GLLSADKQ 452 (459)
T ss_pred hhhcccCC
Confidence 98877543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-05 Score=81.62 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=92.5
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
..++++.|.+||..++-++... ..|.+||++.+...+|.... .+|+..+.|||||.
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gs------------ssi~iWdpdtg~~~pL~~~g------------lgg~slLkwSPdgd 251 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGS------------SSIMIWDPDTGQKIPLIPKG------------LGGFSLLKWSPDGD 251 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCc------------ceEEEEcCCCCCcccccccC------------CCceeeEEEcCCCC
Confidence 5678999999999988777432 37999999987766665221 14556799999998
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
.+.-. .-.....+|.. ...-..++..-..+.+....|||+|+.|+|+.... ..||.+..++.
T Consensus 252 ~lfaA-------------t~davfrlw~e--~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs---p~lysl~f~~~ 313 (445)
T KOG2139|consen 252 VLFAA-------------TCDAVFRLWQE--NQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS---PRLYSLTFDGE 313 (445)
T ss_pred EEEEe-------------cccceeeeehh--cccceecceeccCCceeeeeecCCCCEEEEEEcCC---ceEEEEeecCC
Confidence 65443 11122234431 11111112222334777889999999999987544 36777765543
Q ss_pred CC---------CcEEeecCCC------ccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 492 DV---------APRILFDRSS------EDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 492 ~~---------~~~~~~~~~~------~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
.. +...+.|... +..-. .+...++|.|-|.+|+...++
T Consensus 314 ~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~c-geaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 314 DSVFLRPQSIKRVLLIADLQEVTICAGQRLCC-GEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred CccccCcccceeeeeeccchhhhhhcCccccc-CccceeeECCCCCEEEEEEcC
Confidence 21 1111112110 00001 022338899999999988754
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.3e-06 Score=85.28 Aligned_cols=194 Identities=15% Similarity=0.142 Sum_probs=111.6
Q ss_pred HHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceee
Q 002209 102 IREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (953)
Q Consensus 102 ~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~ 181 (953)
+..+.+...-..++|++||..|+....+ +.++||+.+.. .+.
T Consensus 138 ~~~l~~~g~~k~vaf~~~gs~latgg~d---------------------------------g~lRv~~~Ps~-----~t~ 179 (398)
T KOG0771|consen 138 YQKLVDFGQQKVVAFNGDGSKLATGGTD---------------------------------GTLRVWEWPSM-----LTI 179 (398)
T ss_pred hHHHhhcCcceEEEEcCCCCEeeecccc---------------------------------ceEEEEecCcc-----hhh
Confidence 3333333333567888998888877654 35678886431 111
Q ss_pred eecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc-eeecccCCCccccccccceEEecCC---eE
Q 002209 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPLFQSPDIYLNAIFDNFVWVNNS---TL 257 (953)
Q Consensus 182 l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg---~~ 257 (953)
+....+...+....|||||+.|++... ....+|++++|. ...+++..... .+..+.|+-|+ ..
T Consensus 180 l~e~~~~~eV~DL~FS~dgk~lasig~----------d~~~VW~~~~g~~~a~~t~~~k~~---~~~~cRF~~d~~~~~l 246 (398)
T KOG0771|consen 180 LEEIAHHAEVKDLDFSPDGKFLASIGA----------DSARVWSVNTGAALARKTPFSKDE---MFSSCRFSVDNAQETL 246 (398)
T ss_pred hhhHhhcCccccceeCCCCcEEEEecC----------CceEEEEeccCchhhhcCCcccch---hhhhceecccCCCceE
Confidence 211223447899999999999999752 255666776764 33455333322 26788999777 33
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC----ceeEeCCC-
Q 002209 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG----TVKEIGPP- 331 (953)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g----~~~~l~~~- 331 (953)
.+++..... +...++.+.+ .+ ..+.....
T Consensus 247 ~laa~~~~~---------------------------------------------~~v~~~~~~~w~~~~~l~~~~~~~~~ 281 (398)
T KOG0771|consen 247 RLAASQFPG---------------------------------------------GGVRLCDISLWSGSNFLRLRKKIKRF 281 (398)
T ss_pred EEEEecCCC---------------------------------------------CceeEEEeeeeccccccchhhhhhcc
Confidence 333311000 1111222233 33 33333333
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
..+++++.|+||+++|..+.++ .|-+++...=+.-.+... .+..-+..+.|+||.+
T Consensus 282 ~siSsl~VS~dGkf~AlGT~dG-------------sVai~~~~~lq~~~~vk~-----------aH~~~VT~ltF~Pdsr 337 (398)
T KOG0771|consen 282 KSISSLAVSDDGKFLALGTMDG-------------SVAIYDAKSLQRLQYVKE-----------AHLGFVTGLTFSPDSR 337 (398)
T ss_pred CcceeEEEcCCCcEEEEeccCC-------------cEEEEEeceeeeeEeehh-----------hheeeeeeEEEcCCcC
Confidence 6789999999999999998654 677776653322222211 1112346789999998
Q ss_pred CceE
Q 002209 412 STLY 415 (953)
Q Consensus 412 ~i~~ 415 (953)
.++-
T Consensus 338 ~~~s 341 (398)
T KOG0771|consen 338 YLAS 341 (398)
T ss_pred cccc
Confidence 6554
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00032 Score=79.61 Aligned_cols=195 Identities=13% Similarity=0.069 Sum_probs=105.2
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEecc-CCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD-LPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~-~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
.....++.|+=|.+.+..... +.|.++++..+-.+.-.. .+.. . ..++ ..+-|+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~-------------G~Id~fNmQSGi~r~sf~~~~ah-~---------~~V~--gla~D~ 503 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSK-------------GTIDRFNMQSGIHRKSFGDSPAH-K---------GEVT--GLAVDG 503 (910)
T ss_pred cceEEEEEeccCceEEEeccC-------------CeEEEEEcccCeeecccccCccc-c---------Ccee--EEEecC
Confidence 556788889888877665422 378888887655443221 1111 0 0111 123333
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec--ccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~--~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
..-... ..+..+.+-.|+. ..+. .+... ......+........++.+. ++ ..|.++|.
T Consensus 504 ~n~~~v-----------sa~~~Gilkfw~f---~~k~--l~~~l~l~~~~~~iv~hr~s~l~a~~~-dd---f~I~vvD~ 563 (910)
T KOG1539|consen 504 TNRLLV-----------SAGADGILKFWDF---KKKV--LKKSLRLGSSITGIVYHRVSDLLAIAL-DD---FSIRVVDV 563 (910)
T ss_pred CCceEE-----------EccCcceEEEEec---CCcc--eeeeeccCCCcceeeeeehhhhhhhhc-Cc---eeEEEEEc
Confidence 321111 1134556777775 3222 22111 11223344444444333332 21 35777887
Q ss_pred CCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
.+. +....+......+.. +.|||||+||+....+. .|..||+.++......
T Consensus 564 ~t~--kvvR~f~gh~nritd------~~FS~DgrWlisasmD~---------------------tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 564 VTR--KVVREFWGHGNRITD------MTFSPDGRWLISASMDS---------------------TIRTWDLPTGTLIDGL 614 (910)
T ss_pred hhh--hhhHHhhccccceee------eEeCCCCcEEEEeecCC---------------------cEEEEeccCcceeeeE
Confidence 653 222222222222222 78999999999888643 3999999998766544
Q ss_pred ccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEE
Q 002209 569 ESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQS 615 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~ 615 (953)
.-+.. .+ ..+|||+|..++.+..+.. .||+|.
T Consensus 615 ~vd~~-----~~-------sls~SPngD~LAT~Hvd~~---gIylWs 646 (910)
T KOG1539|consen 615 LVDSP-----CT-------SLSFSPNGDFLATVHVDQN---GIYLWS 646 (910)
T ss_pred ecCCc-----ce-------eeEECCCCCEEEEEEecCc---eEEEEE
Confidence 33322 12 2579999999998888754 477764
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.9e-06 Score=83.23 Aligned_cols=179 Identities=12% Similarity=0.129 Sum_probs=103.1
Q ss_pred eEEEEEc-CC-ceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCccc
Q 002209 315 QLVLVSL-DG-TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAED 389 (953)
Q Consensus 315 ~l~~~~~-~g-~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~ 389 (953)
+|-++.+ +| -.+++... .+++.+.||.|+..|+..+.+ ..+.+.-+. |+..++...+.
T Consensus 286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD-------------~tvRiHGlKSGK~LKEfrGHs---- 348 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFD-------------QTVRIHGLKSGKCLKEFRGHS---- 348 (508)
T ss_pred cEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccccc-------------ceEEEeccccchhHHHhcCcc----
Confidence 3334444 55 34444422 788999999999999887744 366666665 33333333222
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC-ceE--EeecccccCCeeeccC
Q 002209 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEI--LHKLDLRYGGISWCDD 466 (953)
Q Consensus 390 ~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~-~~~--l~~~~~~~~~~~~SpD 466 (953)
..+....|++||..|+-. +..+.+-+|+. ..++ ... ....+..+.++-.-|.
T Consensus 349 ---------Syvn~a~ft~dG~~iisa-------------SsDgtvkvW~~---KtteC~~Tfk~~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 349 ---------SYVNEATFTDDGHHIISA-------------SSDGTVKVWHG---KTTECLSTFKPLGTDYPVNSVILLPK 403 (508)
T ss_pred ---------ccccceEEcCCCCeEEEe-------------cCCccEEEecC---cchhhhhhccCCCCcccceeEEEcCC
Confidence 234567899999987665 44567778874 2211 111 1234455666666666
Q ss_pred CceEEEEEecccCceEEEEEcCCCCCCCcEEeecCC--CccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCC
Q 002209 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS--SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNG 544 (953)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~ 544 (953)
.-.-+...++. +.+|++++.+. -.+.+.... .++... -..||.|.|++....+.
T Consensus 404 npeh~iVCNrs---ntv~imn~qGQ--vVrsfsSGkREgGdFi~------~~lSpkGewiYcigED~------------- 459 (508)
T KOG0275|consen 404 NPEHFIVCNRS---NTVYIMNMQGQ--VVRSFSSGKREGGDFIN------AILSPKGEWIYCIGEDG------------- 459 (508)
T ss_pred CCceEEEEcCC---CeEEEEeccce--EEeeeccCCccCCceEE------EEecCCCcEEEEEccCc-------------
Confidence 54433333433 36999998873 122222221 222211 45799999988776432
Q ss_pred CCCCCCCCeEEEEECCCCceEEE
Q 002209 545 ATPEGNIPFLDLFDINTGSKERI 567 (953)
Q Consensus 545 ~~~~~~~~~L~~~d~~~~~~~~l 567 (953)
.||-+...+|+.++.
T Consensus 460 --------vlYCF~~~sG~LE~t 474 (508)
T KOG0275|consen 460 --------VLYCFSVLSGKLERT 474 (508)
T ss_pred --------EEEEEEeecCceeee
Confidence 488888888877654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00016 Score=75.69 Aligned_cols=143 Identities=18% Similarity=0.242 Sum_probs=84.8
Q ss_pred cceEEEEEc-CCceeEeCCCCcccccccC-CCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 313 TTQLVLVSL-DGTVKEIGPPAVYTSLDPS-PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
.++|++++. +++.+.+..+. ..++.+. +||+. ++... ..+.++|.++++.+.+....... .
T Consensus 21 ~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l-~v~~~--------------~~~~~~d~~~g~~~~~~~~~~~~-~ 83 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRL-YVADS--------------GGIAVVDPDTGKVTVLADLPDGG-V 83 (246)
T ss_dssp TTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEE-EEEET--------------TCEEEEETTTTEEEEEEEEETTC-S
T ss_pred CCEEEEEECCCCeEEEEecCC-CceEEEEccCCEE-EEEEc--------------CceEEEecCCCcEEEEeeccCCC-c
Confidence 368999999 66665554443 4455666 67654 44431 25667788888777766642110 0
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceE
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l 470 (953)
....+..+++.|||+ +|.++........ ...+.+|.++. + ++...+...-...++++|+|||+.|
T Consensus 84 ------~~~~~ND~~vd~~G~--ly~t~~~~~~~~~---~~~g~v~~~~~---~-~~~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 84 ------PFNRPNDVAVDPDGN--LYVTDSGGGGASG---IDPGSVYRIDP---D-GKVTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp ------CTEEEEEEEE-TTS---EEEEEECCBCTTC---GGSEEEEEEET---T-SEEEEEEEEESSEEEEEEETTSSEE
T ss_pred ------ccCCCceEEEcCCCC--EEEEecCCCcccc---ccccceEEECC---C-CeEEEEecCcccccceEECCcchhe
Confidence 113445789999998 4443322111100 11167999984 4 5555555555556789999999998
Q ss_pred EEEEecccCceEEEEEcCCC
Q 002209 471 VYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~ 490 (953)
++..... .+||.++.+.
T Consensus 149 yv~ds~~---~~i~~~~~~~ 165 (246)
T PF08450_consen 149 YVADSFN---GRIWRFDLDA 165 (246)
T ss_dssp EEEETTT---TEEEEEEEET
T ss_pred eeccccc---ceeEEEeccc
Confidence 8764332 3799888864
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.8e-05 Score=88.29 Aligned_cols=154 Identities=15% Similarity=0.180 Sum_probs=88.7
Q ss_pred ceeEeCCCCcccccccCC-CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCcc
Q 002209 324 TVKEIGPPAVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMR 402 (953)
Q Consensus 324 ~~~~l~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~ 402 (953)
-++.+..+..++.++|.| |-++++-.+.+ +.+.+|++...++...++.. .-+.
T Consensus 402 CL~~F~HndfVTcVaFnPvDDryFiSGSLD-------------~KvRiWsI~d~~Vv~W~Dl~-------------~lIT 455 (712)
T KOG0283|consen 402 CLKVFSHNDFVTCVAFNPVDDRYFISGSLD-------------GKVRLWSISDKKVVDWNDLR-------------DLIT 455 (712)
T ss_pred eeeEEecCCeeEEEEecccCCCcEeecccc-------------cceEEeecCcCeeEeehhhh-------------hhhe
Confidence 344444558999999999 77777666644 49999999877666555433 2346
Q ss_pred ceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE---E--ee----cccccCCeeeccC-CceEEE
Q 002209 403 SINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI---L--HK----LDLRYGGISWCDD-SLALVY 472 (953)
Q Consensus 403 ~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~---l--~~----~~~~~~~~~~SpD-g~~l~~ 472 (953)
++.|+|||+..+.. .-.+..++|+. .+-+.+. + .. ....+.++.|.|- -..|+.
T Consensus 456 Avcy~PdGk~avIG-------------t~~G~C~fY~t---~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 456 AVCYSPDGKGAVIG-------------TFNGYCRFYDT---EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred eEEeccCCceEEEE-------------EeccEEEEEEc---cCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 78999999977665 22334455542 2211110 1 10 0124667777753 335666
Q ss_pred EEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 473 ESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 473 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
++++. +|.++|.... +....+..... ....-..+|+.||++|+....
T Consensus 520 TSnDS----rIRI~d~~~~--~lv~KfKG~~n----~~SQ~~Asfs~Dgk~IVs~se 566 (712)
T KOG0283|consen 520 TSNDS----RIRIYDGRDK--DLVHKFKGFRN----TSSQISASFSSDGKHIVSASE 566 (712)
T ss_pred ecCCC----ceEEEeccch--hhhhhhccccc----CCcceeeeEccCCCEEEEeec
Confidence 65543 6777776432 22222221110 001111579999999999873
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.8e-05 Score=84.93 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=59.9
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
+.+..++|||||++||.++.+. -+.+++.+..+..-+.. +..+|..-+.||||||
T Consensus 291 g~in~f~FS~DG~~LA~VSqDG-------------fLRvF~fdt~eLlg~mk------------SYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDG-------------FLRIFDFDTQELLGVMK------------SYFGGLLCVCWSPDGK 345 (636)
T ss_pred ccccceeEcCCCceEEEEecCc-------------eEEEeeccHHHHHHHHH------------hhccceEEEEEcCCcc
Confidence 5678899999999999999654 67777777544332222 2234445689999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe---ecccccCCeeecc
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---KLDLRYGGISWCD 465 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~---~~~~~~~~~~~Sp 465 (953)
.|+.. ++++.|-+|.+ . +.+.+. .+...+..++|.|
T Consensus 346 yIvtG-------------GEDDLVtVwSf---~--erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 346 YIVTG-------------GEDDLVTVWSF---E--ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEec-------------CCcceEEEEEe---c--cceEEEeccccccceeeEeecc
Confidence 88765 55666667765 2 223332 3344566677766
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.1e-05 Score=85.41 Aligned_cols=192 Identities=17% Similarity=0.166 Sum_probs=119.7
Q ss_pred eEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCC
Q 002209 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (953)
Q Consensus 194 ~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 273 (953)
++||++|++|+... +..|-.+|+.++... +....... ...+..++.+||++.|+.+.
T Consensus 25 ~~~s~nG~~L~t~~----------~d~Vi~idv~t~~~~-l~s~~~ed-~d~ita~~l~~d~~~L~~a~----------- 81 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC----------GDRVIIIDVATGSIA-LPSGSNED-EDEITALALTPDEEVLVTAS----------- 81 (775)
T ss_pred eeECCCCCEEEEec----------CceEEEEEccCCcee-cccCCccc-hhhhheeeecCCccEEEEee-----------
Confidence 89999999887754 456888999998763 32222111 11256888999999988761
Q ss_pred CCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEe--CCC-CcccccccCCCCcEEEEE
Q 002209 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI--GPP-AVYTSLDPSPDEKYILIS 349 (953)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l--~~~-~~~~~~~~SpDG~~l~~~ 349 (953)
....|-++.+ +|+..+. ..+ +.+...+|+|-|..++..
T Consensus 82 --------------------------------------rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtg 123 (775)
T KOG0319|consen 82 --------------------------------------RSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATG 123 (775)
T ss_pred --------------------------------------ccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEec
Confidence 2233445666 7743332 112 566678999999555544
Q ss_pred EecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002209 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (953)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (953)
.. .+.+.+||+.++... .+..+++ -+.++.|.|+-.+-+....
T Consensus 124 ga-------------D~~v~VWdi~~~~~th~fkG~gG-------------vVssl~F~~~~~~~lL~sg---------- 167 (775)
T KOG0319|consen 124 GA-------------DGRVKVWDIKNGYCTHSFKGHGG-------------VVSSLLFHPHWNRWLLASG---------- 167 (775)
T ss_pred cc-------------cceEEEEEeeCCEEEEEecCCCc-------------eEEEEEeCCccchhheeec----------
Confidence 43 348999999866543 3444432 2356788888765222210
Q ss_pred cccCCeEEEEecCCCCCCCc--eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 429 VTPRDIIYTQQAEPVQGEGP--EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 429 ~~~~~~l~~~d~~~~~g~~~--~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
.....+++|++ ..+.. ..+..+...+.++++++|+..+++.+.++ -++++|+..
T Consensus 168 -~~D~~v~vwnl---~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk----vi~vwd~~~ 223 (775)
T KOG0319|consen 168 -ATDGTVRVWNL---NDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK----VIIVWDLVQ 223 (775)
T ss_pred -CCCceEEEEEc---ccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc----EEEEeehhh
Confidence 33557889986 32222 22345566778899999999999886554 344555533
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0013 Score=73.22 Aligned_cols=156 Identities=18% Similarity=0.166 Sum_probs=95.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+.++++|.+.+.||.+..+ ++|-||++..+ .-....|.+ +...
T Consensus 27 ~I~slA~s~kS~~lAvsRt~---------------------------------g~IEiwN~~~~--w~~~~vi~g-~~dr 70 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTD---------------------------------GNIEIWNLSNN--WFLEPVIHG-PEDR 70 (691)
T ss_pred ceEEEEEeccCCceeeeccC---------------------------------CcEEEEccCCC--ceeeEEEec-CCCC
Confidence 45678889998888887764 36788888541 123455554 4444
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....|++ |.+|.-.. ....|--||+.+++.+.-....... +-+.+..|-++.+++..
T Consensus 71 sIE~L~W~e-~~RLFS~g---------~sg~i~EwDl~~lk~~~~~d~~gg~----IWsiai~p~~~~l~Igc------- 129 (691)
T KOG2048|consen 71 SIESLAWAE-GGRLFSSG---------LSGSITEWDLHTLKQKYNIDSNGGA----IWSIAINPENTILAIGC------- 129 (691)
T ss_pred ceeeEEEcc-CCeEEeec---------CCceEEEEecccCceeEEecCCCcc----eeEEEeCCccceEEeec-------
Confidence 889999995 44554422 3568888898887765443322211 33444446666666551
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee--E-eCCC-CcccccccCCCCc
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK--E-IGPP-AVYTSLDPSPDEK 344 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~--~-l~~~-~~~~~~~~SpDG~ 344 (953)
..+.|+.++. .++.+ + +... +.+-+++|+|+|.
T Consensus 130 ------------------------------------------ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~ 167 (691)
T KOG2048|consen 130 ------------------------------------------DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT 167 (691)
T ss_pred ------------------------------------------CCceEEEEecCCceEEEEeecccccceEEEEEecCCcc
Confidence 1123444444 33221 1 1122 5677899999999
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCce
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF 377 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~ 377 (953)
+|+-.+.+. -|.+||+..+.
T Consensus 168 ~i~~Gs~Dg-------------~Iriwd~~~~~ 187 (691)
T KOG2048|consen 168 KIAGGSIDG-------------VIRIWDVKSGQ 187 (691)
T ss_pred EEEecccCc-------------eEEEEEcCCCc
Confidence 999887543 69999998443
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.5e-06 Score=86.01 Aligned_cols=227 Identities=14% Similarity=0.036 Sum_probs=137.1
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCC
Q 002209 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (953)
Q Consensus 108 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~ 187 (953)
.-.++...++|||+.|+..... ..|-|||+... ..+.-..++.
T Consensus 465 dnyiRSckL~pdgrtLivGGea---------------------------------stlsiWDLAap----Tprikaelts 507 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEA---------------------------------STLSIWDLAAP----TPRIKAELTS 507 (705)
T ss_pred ccceeeeEecCCCceEEecccc---------------------------------ceeeeeeccCC----CcchhhhcCC
Confidence 3357788899999998875432 36789999541 1111112333
Q ss_pred CC-cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc-eeecccCCCccccccccceEEecCCeEEEEEecCC
Q 002209 188 GA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (953)
Q Consensus 188 ~~-~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 265 (953)
.. .....+.|||.+ |+|..- ...+|.+||+.... .+++-.+.++ +..+..++||..|+....+
T Consensus 508 sapaCyALa~spDak-vcFscc--------sdGnI~vwDLhnq~~VrqfqGhtDG-----ascIdis~dGtklWTGGlD- 572 (705)
T KOG0639|consen 508 SAPACYALAISPDAK-VCFSCC--------SDGNIAVWDLHNQTLVRQFQGHTDG-----ASCIDISKDGTKLWTGGLD- 572 (705)
T ss_pred cchhhhhhhcCCccc-eeeeec--------cCCcEEEEEcccceeeecccCCCCC-----ceeEEecCCCceeecCCCc-
Confidence 23 677889999987 667553 14567777776644 4455444433 6678899999999854110
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCCCcccccccCCCC
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDE 343 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~~~~~~~~~SpDG 343 (953)
..+.-+|+ +|. +.+-.-...+.++..+|.|
T Consensus 573 ------------------------------------------------ntvRcWDlregrqlqqhdF~SQIfSLg~cP~~ 604 (705)
T KOG0639|consen 573 ------------------------------------------------NTVRCWDLREGRQLQQHDFSSQIFSLGYCPTG 604 (705)
T ss_pred ------------------------------------------------cceeehhhhhhhhhhhhhhhhhheecccCCCc
Confidence 12334455 442 2221111456778889999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
.||++.... .++++....+.+..+|..+.. -+-++.|++=|+..+-.
T Consensus 605 dWlavGMen-------------s~vevlh~skp~kyqlhlheS-------------cVLSlKFa~cGkwfvSt------- 651 (705)
T KOG0639|consen 605 DWLAVGMEN-------------SNVEVLHTSKPEKYQLHLHES-------------CVLSLKFAYCGKWFVST------- 651 (705)
T ss_pred cceeeeccc-------------CcEEEEecCCccceeeccccc-------------EEEEEEecccCceeeec-------
Confidence 999998743 388888888877777766532 13578899989854333
Q ss_pred CcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEec
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
+.++.+-.|.. | -|... .-.+....+.+...|-|.++||..+.+
T Consensus 652 ------GkDnlLnawrt-P-yGasi-FqskE~SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 652 ------GKDNLLNAWRT-P-YGASI-FQSKESSSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred ------CchhhhhhccC-c-cccce-eeccccCcceeeeeccCceEEEecCCC
Confidence 22333333331 1 12221 122333445567788899999887654
|
|
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.5e-06 Score=88.35 Aligned_cols=108 Identities=11% Similarity=-0.092 Sum_probs=72.2
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCcEEEEcCCCCCCCCCChhh--hhhhHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEA--NDRFVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~G~G~~~~--~~~~~~~~~~D~~~~ 746 (953)
.|++|++||.... ....+.......++ ..+|.|+.+|..+. +.... ..........++...
T Consensus 36 ~p~vilIHG~~~~-------------~~~~~~~~l~~~ll~~~~~nVi~vD~~~~---~~~~y~~a~~~~~~v~~~la~~ 99 (275)
T cd00707 36 RPTRFIIHGWTSS-------------GEESWISDLRKAYLSRGDYNVIVVDWGRG---ANPNYPQAVNNTRVVGAELAKF 99 (275)
T ss_pred CCcEEEEcCCCCC-------------CCCcHHHHHHHHHHhcCCCEEEEEECccc---cccChHHHHHhHHHHHHHHHHH
Confidence 5889999995311 00111122233344 46899999766432 21111 111223345677888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
+++|.+...++.+++.|+||||||.++..++.+.|++++.++...|.
T Consensus 100 l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa 146 (275)
T cd00707 100 LDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPA 146 (275)
T ss_pred HHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCC
Confidence 88887764466789999999999999999999999999999998875
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.8e-06 Score=92.04 Aligned_cols=78 Identities=23% Similarity=0.402 Sum_probs=62.2
Q ss_pred HHhcCcccccCCCC-CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc--cHHHHHHHHHHH
Q 002209 817 YVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE--SIMHVLWETDRW 893 (953)
Q Consensus 817 ~~~~sp~~~~~~i~-~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~--~~~~~~~~i~~f 893 (953)
+...++...+.++. .|+|++||..|..|| ...+..++.+.+.. +.+..++++++|...... .....+..+.+|
T Consensus 218 ~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp--~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f 293 (299)
T COG1073 218 LLLLDPFDDAEKISPRPVLLVHGERDEVVP--LRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEF 293 (299)
T ss_pred hccCcchhhHhhcCCcceEEEecCCCcccc--hhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHH
Confidence 44556666677777 699999999999999 99999999998875 578888999999876422 234788899999
Q ss_pred HHHhc
Q 002209 894 LQKYC 898 (953)
Q Consensus 894 l~~~l 898 (953)
|.+++
T Consensus 294 ~~~~l 298 (299)
T COG1073 294 LERHL 298 (299)
T ss_pred HHHhc
Confidence 99875
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00044 Score=71.79 Aligned_cols=226 Identities=16% Similarity=0.125 Sum_probs=126.7
Q ss_pred ccceEecc-CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 191 LNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 191 ~~~~~wSP-DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
...+..+| ++.-++|.++ . ..-++++|..+|+..+....+..+. ......||+||++||.+-
T Consensus 7 gH~~a~~p~~~~avafaRR-P-------G~~~~v~D~~~g~~~~~~~a~~gRH--FyGHg~fs~dG~~LytTE------- 69 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARR-P-------GTFALVFDCRTGQLLQRLWAPPGRH--FYGHGVFSPDGRLLYTTE------- 69 (305)
T ss_pred ccceeeCCCCCeEEEEEeC-C-------CcEEEEEEcCCCceeeEEcCCCCCE--EecCEEEcCCCCEEEEec-------
Confidence 45678889 5566666554 2 4578899999988765444443321 134788999999999761
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeC---CC-CcccccccCCCCcE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIG---PP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~---~~-~~~~~~~~SpDG~~ 345 (953)
+..+ .+.+.|-++|.....+++. .. -+.-.+.|.|||+.
T Consensus 70 -------------------------------nd~~------~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~t 112 (305)
T PF07433_consen 70 -------------------------------NDYE------TGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGET 112 (305)
T ss_pred -------------------------------cccC------CCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCE
Confidence 1111 1556788888843333333 22 34457889999999
Q ss_pred EEEEEec---CCcc--ccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002209 346 ILISSIH---RPYS--FIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 346 l~~~~~~---~~~~--~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
|++.... .|.. .+........++...|..++++..-...+.. -....+|-++|++||. +++..+.+
T Consensus 113 LvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~--------~~~lSiRHLa~~~~G~-V~~a~Q~q 183 (305)
T PF07433_consen 113 LVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD--------LHQLSIRHLAVDGDGT-VAFAMQYQ 183 (305)
T ss_pred EEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc--------ccccceeeEEecCCCc-EEEEEecC
Confidence 9887532 1111 1111122233566665554443322111100 1123467899999986 34433322
Q ss_pred cCCCcccccccCCeEEEEecCCCCCCCceEEeec-------ccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-------DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~-------~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
+... .....+.+.+ .++..+.+... ...+.++++++||+.++.++.+.+ .+.++|..++
T Consensus 184 -g~~~----~~~PLva~~~----~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg---~~~~~d~~tg 249 (305)
T PF07433_consen 184 -GDPG----DAPPLVALHR----RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG---RVAVWDAATG 249 (305)
T ss_pred -CCCC----ccCCeEEEEc----CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC---EEEEEECCCC
Confidence 1110 1122455554 23334433221 344667999999999998876653 4666677765
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.8e-06 Score=79.83 Aligned_cols=221 Identities=17% Similarity=0.129 Sum_probs=126.9
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCC
Q 002209 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (953)
Q Consensus 642 ~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~ 721 (953)
..+...||..+.+.+|--.+ +.+-.+++-|++.. ...++..++...+++||.|++.+|
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~-------~~~g~~~va~a~Gv--------------~~~fYRrfA~~a~~~Gf~Vlt~dy- 65 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADG-------KASGRLVVAGATGV--------------GQYFYRRFAAAAAKAGFEVLTFDY- 65 (281)
T ss_pred cccccCCCccCccccccCCC-------CCCCcEEecccCCc--------------chhHhHHHHHHhhccCceEEEEec-
Confidence 56777899999999984332 13323333333210 112234556667789999999555
Q ss_pred CCCCCCChhhh------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEE-EEcccC-
Q 002209 722 PIIGEGDEEAN------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG-IARSGA- 793 (953)
Q Consensus 722 ~~~G~G~~~~~------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~-v~~~~~- 793 (953)
+|.|++... -.+.+-...|+.++++++.+.. ...+...+|||+||.+...+. +++ ++.+. |..++.
T Consensus 66 --RG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~-~~~-k~~a~~vfG~gag 139 (281)
T COG4757 66 --RGIGQSRPASLSGSQWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLG-QHP-KYAAFAVFGSGAG 139 (281)
T ss_pred --ccccCCCccccccCccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeecccc-cCc-ccceeeEeccccc
Confidence 566665321 2345667889999999998742 235789999999998866554 443 33322 222221
Q ss_pred -CCCC---------------CCCc------------Cccc-ccchhhhhHHHHHh------cCcc-----cccCCCCCcE
Q 002209 794 -YNRT---------------LTPF------------GFQN-EDRTLWEATSTYVE------MSPF-----MSANKLKKPI 833 (953)
Q Consensus 794 -~d~~---------------~~~~------------~~~~-~~~~~~~~~~~~~~------~sp~-----~~~~~i~~P~ 833 (953)
.-+. ..+. ++.. .......+-..+.+ .+|. +..+++.+|+
T Consensus 140 wsg~m~~~~~l~~~~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi 219 (281)
T COG4757 140 WSGWMGLRERLGAVLLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPI 219 (281)
T ss_pred cccchhhhhcccceeeccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCce
Confidence 1100 0000 0000 00011111111111 1221 2235678999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC----CccCCCcccHHHHHHHHHHHH
Q 002209 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE----SHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 834 Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~----~H~~~~~~~~~~~~~~i~~fl 894 (953)
..+.-.+|+-+| +.....+......+ +.+...++.+ ||.-...+..+...+++++||
T Consensus 220 ~~~~~~DD~w~P--~As~d~f~~~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 220 TFSRALDDPWAP--PASRDAFASFYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred eeeccCCCCcCC--HHHHHHHHHhhhcC--cccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 999999999998 77666776666544 5677777754 887544444577788888886
|
|
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-05 Score=76.25 Aligned_cols=170 Identities=15% Similarity=0.136 Sum_probs=105.8
Q ss_pred CCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002209 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (953)
Q Consensus 697 ~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (953)
|.......+..|+++|+.|+..|..- .+.....-++...|+.+.+++..++-. .+++.|+|+|+|+-+.-.+
T Consensus 14 w~~~d~~~a~~l~~~G~~VvGvdsl~------Yfw~~rtP~~~a~Dl~~~i~~y~~~w~--~~~vvLiGYSFGADvlP~~ 85 (192)
T PF06057_consen 14 WRDLDKQIAEALAKQGVPVVGVDSLR------YFWSERTPEQTAADLARIIRHYRARWG--RKRVVLIGYSFGADVLPFI 85 (192)
T ss_pred chhhhHHHHHHHHHCCCeEEEechHH------HHhhhCCHHHHHHHHHHHHHHHHHHhC--CceEEEEeecCCchhHHHH
Confidence 44445677888999999999955421 123344457788999999998887743 4699999999999888888
Q ss_pred HHhCCC----cccEEEEcccCCCC--CCCCcCcccccchhhhhHHHHHhcCcccccCCCC-CcEEEEEeCCCCCCCCchH
Q 002209 777 LAHAPH----LFCCGIARSGAYNR--TLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTM 849 (953)
Q Consensus 777 a~~~p~----~~~a~v~~~~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Li~~G~~D~~v~~~~~ 849 (953)
..+.|. +++.++++++.... .....++.... ... ..+.+...+.++. .|++.+.|++|.-..|+.
T Consensus 86 ~nrLp~~~r~~v~~v~Ll~p~~~~dFeihv~~wlg~~-----~~~--~~~~~~pei~~l~~~~v~CiyG~~E~d~~cp~- 157 (192)
T PF06057_consen 86 YNRLPAALRARVAQVVLLSPSTTADFEIHVSGWLGMG-----GDD--AAYPVIPEIAKLPPAPVQCIYGEDEDDSLCPS- 157 (192)
T ss_pred HhhCCHHHHhheeEEEEeccCCcceEEEEhhhhcCCC-----CCc--ccCCchHHHHhCCCCeEEEEEcCCCCCCcCcc-
Confidence 887774 57777777664221 11100000000 000 0123444455564 489999998776433211
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 850 QSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 850 ~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
++. ..++.+.+|| ||.|. .+...+.+.|++-++
T Consensus 158 --------l~~--~~~~~i~lpG-gHHfd--~dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 158 --------LRQ--PGVEVIALPG-GHHFD--GDYDALAKRILDALK 190 (192)
T ss_pred --------ccC--CCcEEEEcCC-CcCCC--CCHHHHHHHHHHHHh
Confidence 222 3468888998 77773 345566666666554
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00013 Score=76.34 Aligned_cols=213 Identities=19% Similarity=0.116 Sum_probs=120.0
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEec-cCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc-
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWS-QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY- 241 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wS-PDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~- 241 (953)
.|+.++..+ +....+. ++. .....+. +|| .|+++. ...+.++|+++++.+.+.......
T Consensus 23 ~i~~~~~~~----~~~~~~~-~~~---~~G~~~~~~~g-~l~v~~----------~~~~~~~d~~~g~~~~~~~~~~~~~ 83 (246)
T PF08450_consen 23 RIYRVDPDT----GEVEVID-LPG---PNGMAFDRPDG-RLYVAD----------SGGIAVVDPDTGKVTVLADLPDGGV 83 (246)
T ss_dssp EEEEEETTT----TEEEEEE-SSS---EEEEEEECTTS-EEEEEE----------TTCEEEEETTTTEEEEEEEEETTCS
T ss_pred EEEEEECCC----CeEEEEe-cCC---CceEEEEccCC-EEEEEE----------cCceEEEecCCCcEEEEeeccCCCc
Confidence 567777632 3332222 332 3445555 665 455543 345566699998877776542111
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 321 (953)
.......+++.|||+ |+++....... ... ..+.||+++.
T Consensus 84 ~~~~~ND~~vd~~G~-ly~t~~~~~~~--------------------------------~~~--------~~g~v~~~~~ 122 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGN-LYVTDSGGGGA--------------------------------SGI--------DPGSVYRIDP 122 (246)
T ss_dssp CTEEEEEEEE-TTS--EEEEEECCBCT--------------------------------TCG--------GSEEEEEEET
T ss_pred ccCCCceEEEcCCCC-EEEEecCCCcc--------------------------------ccc--------cccceEEECC
Confidence 112256888999998 66662211110 000 1167999998
Q ss_pred CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc--Cce---EEEeccCCCcccCCcccc
Q 002209 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIF---VRELCDLPLAEDIPIAFN 395 (953)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~---~~~l~~~~~~~~~p~~~~ 395 (953)
+|+.+.+... .....++|||||+.|+++... .+.|+.++++ ++. .+.+...+...
T Consensus 123 ~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------- 183 (246)
T PF08450_consen 123 DGKVTVVADGLGFPNGIAFSPDGKTLYVADSF------------NGRIWRFDLDADGGELSNRRVFIDFPGGP------- 183 (246)
T ss_dssp TSEEEEEEEEESSEEEEEEETTSSEEEEEETT------------TTEEEEEEEETTTCCEEEEEEEEE-SSSS-------
T ss_pred CCeEEEEecCcccccceEECCcchheeecccc------------cceeEEEeccccccceeeeeeEEEcCCCC-------
Confidence 8777766655 666789999999998876522 3479999986 331 22232222111
Q ss_pred ccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeee-ccCCceEEEEE
Q 002209 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW-CDDSLALVYES 474 (953)
Q Consensus 396 ~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~-SpDg~~l~~~~ 474 (953)
..+..+++..||+ +|... ...+.|++++. +|.....+.-+......++| .+|.+.|+.++
T Consensus 184 ---g~pDG~~vD~~G~--l~va~-----------~~~~~I~~~~p---~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 184 ---GYPDGLAVDSDGN--LWVAD-----------WGGGRIVVFDP---DGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ---CEEEEEEEBTTS---EEEEE-----------ETTTEEEEEET---TSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ---cCCCcceEcCCCC--EEEEE-----------cCCCEEEEECC---CccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 1234688888886 33321 23568899984 54444445444346677888 47778777654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.2e-05 Score=80.37 Aligned_cols=60 Identities=17% Similarity=0.319 Sum_probs=46.7
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
..+....|+||+..+.+.+ ....++++|+..|............ +..++|.|-++.|+..
T Consensus 124 ~diydL~Ws~d~~~l~s~s---------~dns~~l~Dv~~G~l~~~~~dh~~y----vqgvawDpl~qyv~s~ 183 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFLVSGS---------VDNSVRLWDVHAGQLLAILDDHEHY----VQGVAWDPLNQYVASK 183 (434)
T ss_pred cchhhhhccCCCceeeeee---------ccceEEEEEeccceeEeeccccccc----cceeecchhhhhhhhh
Confidence 4788999999999999855 3668888999888876554444332 7789999999988855
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-05 Score=77.42 Aligned_cols=195 Identities=18% Similarity=0.182 Sum_probs=115.1
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce--eecccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
..+...+||.|.++|+.-. ...-|.+.|++.-++ ..+..++. .+..+.|-...+.|+.++
T Consensus 101 hivk~~af~~ds~~lltgg---------~ekllrvfdln~p~App~E~~ghtg-----~Ir~v~wc~eD~~iLSSa---- 162 (334)
T KOG0278|consen 101 HIVKAVAFSQDSNYLLTGG---------QEKLLRVFDLNRPKAPPKEISGHTG-----GIRTVLWCHEDKCILSSA---- 162 (334)
T ss_pred heeeeEEecccchhhhccc---------hHHHhhhhhccCCCCCchhhcCCCC-----cceeEEEeccCceEEeec----
Confidence 3677789999999888732 233455556555433 33333332 267788886666666441
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCCCcccccccCCCCc
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEK 344 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~~~~~~~~~SpDG~ 344 (953)
....+.++|. +| +++.|..+..+.+..+|+||+
T Consensus 163 ---------------------------------------------dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ 197 (334)
T KOG0278|consen 163 ---------------------------------------------DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR 197 (334)
T ss_pred ---------------------------------------------cCCceEEEEeccCcEEEEEecCCCCcceeeccCCC
Confidence 1123445676 76 455666567889999999999
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
.|..+- ...|..||.+.=. .|... .+|. .+.+.+.+|+...++..
T Consensus 198 ilTia~--------------gssV~Fwdaksf~--~lKs~----k~P~-------nV~SASL~P~k~~fVaG-------- 242 (334)
T KOG0278|consen 198 ILTIAY--------------GSSVKFWDAKSFG--LLKSY----KMPC-------NVESASLHPKKEFFVAG-------- 242 (334)
T ss_pred EEEEec--------------CceeEEecccccc--ceeec----cCcc-------ccccccccCCCceEEec--------
Confidence 876553 2267778776321 11111 1222 33456788887432221
Q ss_pred cccccccCCeEEEEecCCCCCCCceEE-eecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~l-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
++...+|.+|. .+|.+.... ..+.+.+-.+.|||||..-+..+.+++ .+||...+..
T Consensus 243 -----ged~~~~kfDy--~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT--irlWQt~~~~ 300 (334)
T KOG0278|consen 243 -----GEDFKVYKFDY--NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT--IRLWQTTPGK 300 (334)
T ss_pred -----CcceEEEEEec--cCCceeeecccCCCCceEEEEECCCCceeeccCCCce--EEEEEecCCC
Confidence 23346777885 233333332 445566778999999985444444443 5899987655
|
|
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.5e-05 Score=76.45 Aligned_cols=129 Identities=16% Similarity=0.087 Sum_probs=76.9
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCC
Q 002209 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT 720 (953)
Q Consensus 641 ~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~ 720 (953)
.+.+...+|..+...-.+-+.. ....+..+||-+||.|. +.+.|. .....|.+.|+.++..++
T Consensus 8 ~~k~~~~~~~~~~~~a~y~D~~--~~gs~~gTVv~~hGsPG-----------SH~DFk----Yi~~~l~~~~iR~I~iN~ 70 (297)
T PF06342_consen 8 LVKFQAENGKIVTVQAVYEDSL--PSGSPLGTVVAFHGSPG-----------SHNDFK----YIRPPLDEAGIRFIGINY 70 (297)
T ss_pred EEEcccccCceEEEEEEEEecC--CCCCCceeEEEecCCCC-----------Cccchh----hhhhHHHHcCeEEEEeCC
Confidence 4455555665443332222111 11234679999999873 334453 234467889999999666
Q ss_pred CCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 721 TPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 721 ~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
.|+|....+..... .-.+-...++.|.+.-.++ +++.++|||.|+-.|+.++..+| ..++++++|+
T Consensus 71 ---PGf~~t~~~~~~~~-~n~er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 71 ---PGFGFTPGYPDQQY-TNEERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred ---CCCCCCCCCccccc-ChHHHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 45555543321111 1112223344454443454 79999999999999999999985 5677887765
|
|
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.6e-05 Score=77.28 Aligned_cols=61 Identities=18% Similarity=0.116 Sum_probs=43.0
Q ss_pred CCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 827 ~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
..+.+|+.++.|++|..|. .++...+-+..+ ...++..|+| ||.+.. .. .+.+++++.+++
T Consensus 173 ~pl~~pi~~~~G~~D~~vs--~~~~~~W~~~t~---~~f~l~~fdG-gHFfl~-~~----~~~v~~~i~~~l 233 (244)
T COG3208 173 APLACPIHAFGGEKDHEVS--RDELGAWREHTK---GDFTLRVFDG-GHFFLN-QQ----REEVLARLEQHL 233 (244)
T ss_pred CCcCcceEEeccCcchhcc--HHHHHHHHHhhc---CCceEEEecC-cceehh-hh----HHHHHHHHHHHh
Confidence 3478999999999999987 665555655544 3489999998 998852 23 344555555555
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00089 Score=75.11 Aligned_cols=363 Identities=12% Similarity=0.085 Sum_probs=197.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCcccccc-------cc-ceeceEEecCCCC-C----CcceeeeeceEEEEccCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELAR-------PE-EKLAGLRIDGKCN-T----RSRMSFYTGIGIHQLFPDGKL 176 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~-~----~~~~~~~~~i~i~~~~~~g~~ 176 (953)
.+.++.|++|+.-++++.++...-++++.+ |. ..+.+..+-.++. + ....+..+.+.+||.++ +..
T Consensus 194 ~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es-~~~ 272 (775)
T KOG0319|consen 194 AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSES-GKC 272 (775)
T ss_pred heeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEeccc-chh
Confidence 578899999999999998885555555532 11 1122222222211 1 11223335667777632 221
Q ss_pred CceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCcee-ecccCCCcccccccc-ceEEecC
Q 002209 177 GQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PLFQSPDIYLNAIFD-NFVWVNN 254 (953)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~-~~~wspD 254 (953)
...++... ...........-+++.|+.+. ..+|+++|.+..+.. ++....+. +- ..-|-|+
T Consensus 273 ~~~~~~~~--~~e~~~~~~~~~~~~~l~vta----------eQnl~l~d~~~l~i~k~ivG~ndE-----I~Dm~~lG~e 335 (775)
T KOG0319|consen 273 VYKQRQSD--SEEIDHLLAIESMSQLLLVTA----------EQNLFLYDEDELTIVKQIVGYNDE-----ILDMKFLGPE 335 (775)
T ss_pred hhhhccCC--chhhhcceeccccCceEEEEc----------cceEEEEEccccEEehhhcCCchh-----heeeeecCCc
Confidence 11111111 111222233344666666654 578999998877653 44333222 33 4446688
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-C
Q 002209 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-A 332 (953)
Q Consensus 255 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~ 332 (953)
.+.|++++ ....|.++++ +-..+.+... .
T Consensus 336 ~~~laVAT-------------------------------------------------Ns~~lr~y~~~~~~c~ii~GH~e 366 (775)
T KOG0319|consen 336 ESHLAVAT-------------------------------------------------NSPELRLYTLPTSYCQIIPGHTE 366 (775)
T ss_pred cceEEEEe-------------------------------------------------CCCceEEEecCCCceEEEeCchh
Confidence 88999872 2234556677 4444444444 5
Q ss_pred cccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002209 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (953)
Q Consensus 333 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~ 412 (953)
.+.+++..-+|-+|+..+-+ +.+.+|.++.+..+.+.... -+++...+..++.+..|-.
T Consensus 367 ~vlSL~~~~~g~llat~sKD-------------~svilWr~~~~~~~~~~~a~--------~~gH~~svgava~~~~~as 425 (775)
T KOG0319|consen 367 AVLSLDVWSSGDLLATGSKD-------------KSVILWRLNNNCSKSLCVAQ--------ANGHTNSVGAVAGSKLGAS 425 (775)
T ss_pred heeeeeecccCcEEEEecCC-------------ceEEEEEecCCcchhhhhhh--------hcccccccceeeecccCcc
Confidence 56666655578666655533 37888887544333222111 1122233445666655544
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEecCCC--CCCCceEE------eecccccCCeeeccCCceEEEEEecccCceEEE
Q 002209 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPV--QGEGPEIL------HKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (953)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~g~~~~~l------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~ 484 (953)
+... .+.+..+-+|++ +. +...+..+ ..++.+++.++.+|+.+.|+..+.+++. +||
T Consensus 426 ffvs------------vS~D~tlK~W~l-~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkta--KiW 490 (775)
T KOG0319|consen 426 FFVS------------VSQDCTLKLWDL-PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTA--KIW 490 (775)
T ss_pred EEEE------------ecCCceEEEecC-CCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccce--eee
Confidence 3332 134456667776 22 11112222 2457788999999999999888877654 899
Q ss_pred EEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCce
Q 002209 485 VISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSK 564 (953)
Q Consensus 485 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~ 564 (953)
.++ +. ........+...++. ++|||..+.++..+.+ ..+..|.+.+..-
T Consensus 491 ~le-~~---~l~~vLsGH~RGvw~------V~Fs~~dq~laT~SgD---------------------~TvKIW~is~fSC 539 (775)
T KOG0319|consen 491 DLE-QL---RLLGVLSGHTRGVWC------VSFSKNDQLLATCSGD---------------------KTVKIWSISTFSC 539 (775)
T ss_pred ccc-Cc---eEEEEeeCCccceEE------EEeccccceeEeccCC---------------------ceEEEEEecccee
Confidence 887 22 333445555555555 8999998888876522 1388888887766
Q ss_pred EEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCe
Q 002209 565 ERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (953)
Q Consensus 565 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~ 621 (953)
..-.++... .+. ..+|-.+|++++- ...-.-+-+|+..+++.
T Consensus 540 lkT~eGH~~----aVl-------ra~F~~~~~qliS----~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 540 LKTFEGHTS----AVL-------RASFIRNGKQLIS----AGADGLIKLWNIKTNEC 581 (775)
T ss_pred eeeecCccc----eeE-------eeeeeeCCcEEEe----ccCCCcEEEEeccchhh
Confidence 554443321 010 1345566666662 22233466667666654
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00011 Score=76.57 Aligned_cols=110 Identities=19% Similarity=0.305 Sum_probs=70.5
Q ss_pred cCCCCC-cccceEeccCCCeEEEEEeeccccCCCCcceEEEEE------CCC-----Cc---eeecccCCCccccccccc
Q 002209 184 GFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVAD------VDT-----GK---ARPLFQSPDIYLNAIFDN 248 (953)
Q Consensus 184 ~~~~~~-~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d------~~~-----g~---~~~lt~~~~~~~~~~~~~ 248 (953)
.|..+. .++..+|+|+|..||-.. .++..-||... .++ .+ .+...... ...+..
T Consensus 60 ~Ls~H~~aVN~vRf~p~gelLASg~-------D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h----~~diyd 128 (434)
T KOG1009|consen 60 SLSRHTRAVNVVRFSPDGELLASGG-------DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGH----RDDIYD 128 (434)
T ss_pred cccCCcceeEEEEEcCCcCeeeecC-------CCceEEEEEecCcCCccccchhhhCccceEEEEEeccc----ccchhh
Confidence 344333 789999999999998744 33455556544 122 11 01111111 111557
Q ss_pred eEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE
Q 002209 249 FVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE 327 (953)
Q Consensus 249 ~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~ 327 (953)
++|+||+..+++.+ ....++++|+ .|....
T Consensus 129 L~Ws~d~~~l~s~s-------------------------------------------------~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 129 LAWSPDSNFLVSGS-------------------------------------------------VDNSVRLWDVHAGQLLA 159 (434)
T ss_pred hhccCCCceeeeee-------------------------------------------------ccceEEEEEeccceeEe
Confidence 89999999998761 2245667788 786655
Q ss_pred eCCC--CcccccccCCCCcEEEEEEecC
Q 002209 328 IGPP--AVYTSLDPSPDEKYILISSIHR 353 (953)
Q Consensus 328 l~~~--~~~~~~~~SpDG~~l~~~~~~~ 353 (953)
+... ..+..++|.|-+++|+..+.++
T Consensus 160 ~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred eccccccccceeecchhhhhhhhhccCc
Confidence 5444 7788999999999999887554
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0011 Score=70.97 Aligned_cols=277 Identities=13% Similarity=0.143 Sum_probs=142.7
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce-eecccCCCcc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLFQSPDIY 241 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~ 241 (953)
+.|+.|+... |.+.+.+.+-.-.+...+....|.+||+.|- ++.+..|.+|+..+... +++..++.+
T Consensus 222 ~H~~Fw~~~~-~~l~k~~~~fek~ekk~Vl~v~F~engdviT----------gDS~G~i~Iw~~~~~~~~k~~~aH~gg- 289 (626)
T KOG2106|consen 222 GHLYFWTLRG-GSLVKRQGIFEKREKKFVLCVTFLENGDVIT----------GDSGGNILIWSKGTNRISKQVHAHDGG- 289 (626)
T ss_pred ceEEEEEccC-CceEEEeeccccccceEEEEEEEcCCCCEEe----------ecCCceEEEEeCCCceEEeEeeecCCc-
Confidence 4788998853 4333333332222223778889999998653 44577888888766543 233233322
Q ss_pred ccccccceEEecCCeEEEEEecCCCCC-------CCCCCCCC--CCCceeecCCCccccchhhhhhcCCcchhhhhhhhc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGD-------PPKKPLVP--LGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYA 312 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 312 (953)
+..+.-.-||+.|- ...+.... ..+..+.| .|+.....+++ +.++.-..
T Consensus 290 ----v~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~-----------------~di~vGTt 347 (626)
T KOG2106|consen 290 ----VFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGK-----------------GDILVGTT 347 (626)
T ss_pred ----eEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCC-----------------CcEEEeec
Confidence 55666666776554 21111100 01111111 11111111110 00110001
Q ss_pred cceEEEEEc-CC-ceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 313 TTQLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 313 ~~~l~~~~~-~g-~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
+..|..=++ ++ .............++..|+...++....+ +.+.+|+-..-+...+...+
T Consensus 348 rN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqd-------------k~v~lW~~~k~~wt~~~~d~----- 409 (626)
T KOG2106|consen 348 RNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQD-------------KHVRLWNDHKLEWTKIIEDP----- 409 (626)
T ss_pred cceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCc-------------ceEEEccCCceeEEEEecCc-----
Confidence 122333334 33 22222222455677888888877766644 38889983222333333322
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceE
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l 470 (953)
.....|.|-| .++.. ...++.+++|. +......+.......+.+.|||||..|
T Consensus 410 ----------~~~~~fhpsg-~va~G-------------t~~G~w~V~d~---e~~~lv~~~~d~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 410 ----------AECADFHPSG-VVAVG-------------TATGRWFVLDT---ETQDLVTIHTDNEQLSVVRYSPDGAFL 462 (626)
T ss_pred ----------eeEeeccCcc-eEEEe-------------eccceEEEEec---ccceeEEEEecCCceEEEEEcCCCCEE
Confidence 1356789988 56555 34567888885 333333343335566778999999999
Q ss_pred EEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 471 VYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
+..+.++- .-||+++.++. +-..+-.-....+.- +-||+|++++...+
T Consensus 463 Avgs~d~~--iyiy~Vs~~g~--~y~r~~k~~gs~ith------LDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 463 AVGSHDNH--IYIYRVSANGR--KYSRVGKCSGSPITH------LDWSSDSQFLVSNS 510 (626)
T ss_pred EEecCCCe--EEEEEECCCCc--EEEEeeeecCceeEE------eeecCCCceEEecc
Confidence 99876542 35777776653 111111111111111 67999999987665
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00032 Score=69.16 Aligned_cols=182 Identities=11% Similarity=0.065 Sum_probs=108.2
Q ss_pred eEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCC
Q 002209 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (953)
Q Consensus 194 ~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 273 (953)
....-|.++++. +.....+.+||+++|+.......+.. +..+.|+.+|.++++++...-+.
T Consensus 58 ~Did~~s~~liT---------GSAD~t~kLWDv~tGk~la~~k~~~~-----Vk~~~F~~~gn~~l~~tD~~mg~----- 118 (327)
T KOG0643|consen 58 CDIDWDSKHLIT---------GSADQTAKLWDVETGKQLATWKTNSP-----VKRVDFSFGGNLILASTDKQMGY----- 118 (327)
T ss_pred EEecCCcceeee---------ccccceeEEEEcCCCcEEEEeecCCe-----eEEEeeccCCcEEEEEehhhcCc-----
Confidence 333445677766 44567788889999987655443432 77899999999988873321111
Q ss_pred CCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--------CCc-eeEeCCC-CcccccccCCCC
Q 002209 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--------DGT-VKEIGPP-AVYTSLDPSPDE 343 (953)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--------~g~-~~~l~~~-~~~~~~~~SpDG 343 (953)
...+..+++ +.+ ...|..+ ..++..-|+|-|
T Consensus 119 ---------------------------------------~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 119 ---------------------------------------TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred ---------------------------------------ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence 122333333 112 3344444 667888999999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
+.|+..-.+ +.|-.||+.++ +....... +...+.++.+|+|... |.+.
T Consensus 160 ~~ii~Ghe~-------------G~is~~da~~g~~~v~s~~~------------h~~~Ind~q~s~d~T~--FiT~---- 208 (327)
T KOG0643|consen 160 ETIIAGHED-------------GSISIYDARTGKELVDSDEE------------HSSKINDLQFSRDRTY--FITG---- 208 (327)
T ss_pred CEEEEecCC-------------CcEEEEEcccCceeeechhh------------hccccccccccCCcce--EEec----
Confidence 999887633 38999999854 33322111 1124567899999874 3322
Q ss_pred CCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEE
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES 474 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~ 474 (953)
+......++|. ..-+...-...+..++..+++|--..++...
T Consensus 209 -------s~Dttakl~D~---~tl~v~Kty~te~PvN~aaisP~~d~VilgG 250 (327)
T KOG0643|consen 209 -------SKDTTAKLVDV---RTLEVLKTYTTERPVNTAAISPLLDHVILGG 250 (327)
T ss_pred -------ccCccceeeec---cceeeEEEeeecccccceecccccceEEecC
Confidence 22334456664 2111112223455677889999877777654
|
|
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.5e-05 Score=77.26 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=67.0
Q ss_pred CcEEEEEeChHHHHHHHHH-HhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEE
Q 002209 759 SKIAVGGHSYGAFMTANLL-AHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVH 837 (953)
Q Consensus 759 ~~i~l~G~S~GG~~a~~~a-~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~ 837 (953)
+.+.++|||+|..+++.++ .+....++++++++|+..... ....... ....+. ....+..|.+++.
T Consensus 55 ~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~--~~~~~~~----------~~f~~~-p~~~l~~~~~via 121 (171)
T PF06821_consen 55 EPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDP--EPFPPEL----------DGFTPL-PRDPLPFPSIVIA 121 (171)
T ss_dssp TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCH--HCCTCGG----------CCCTTS-HCCHHHCCEEEEE
T ss_pred CCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccc--cchhhhc----------cccccC-cccccCCCeEEEE
Confidence 4699999999999999999 667788999999999743100 0000000 001111 0112346679999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002209 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (953)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (953)
+++|+.|| +..+.++.+++.. +++.++++||..
T Consensus 122 S~nDp~vp--~~~a~~~A~~l~a-----~~~~~~~~GHf~ 154 (171)
T PF06821_consen 122 SDNDPYVP--FERAQRLAQRLGA-----ELIILGGGGHFN 154 (171)
T ss_dssp ETTBSSS---HHHHHHHHHHHT------EEEEETS-TTSS
T ss_pred cCCCCccC--HHHHHHHHHHcCC-----CeEECCCCCCcc
Confidence 99999999 9999999998853 799999999965
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=6e-05 Score=73.60 Aligned_cols=257 Identities=14% Similarity=0.145 Sum_probs=140.9
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+.|+|.++.+.+.. +.+..+........++||+.-..++++.. ++|..+||-..... .+.+........
T Consensus 38 G~L~ile~~~~~gi---~e~~s~d~~D~LfdV~Wse~~e~~~~~a~------GDGSLrl~d~~~~s-~Pi~~~kEH~~E- 106 (311)
T KOG0277|consen 38 GRLFILEVTDPKGI---QECQSYDTEDGLFDVAWSENHENQVIAAS------GDGSLRLFDLTMPS-KPIHKFKEHKRE- 106 (311)
T ss_pred ceEEEEecCCCCCe---EEEEeeecccceeEeeecCCCcceEEEEe------cCceEEEeccCCCC-cchhHHHhhhhh-
Confidence 46899988422211 22222222235788999999888888765 44555555422222 222222222222
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcC
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD 322 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~ 322 (953)
+.++.|.+-.+.++.++ . -| ++-.||.-+..
T Consensus 107 ---V~Svdwn~~~r~~~lts-S--------------------------------------WD-------~TiKLW~~~r~ 137 (311)
T KOG0277|consen 107 ---VYSVDWNTVRRRIFLTS-S--------------------------------------WD-------GTIKLWDPNRP 137 (311)
T ss_pred ---eEEeccccccceeEEee-c--------------------------------------cC-------CceEeecCCCC
Confidence 67889997666666551 1 11 33445544443
Q ss_pred CceeEeCCC-CcccccccCC-CCcEEEEEEecCCccccccCCCCCcceEEEecc--CceEEEeccCCCcccCCccccccc
Q 002209 323 GTVKEIGPP-AVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVR 398 (953)
Q Consensus 323 g~~~~l~~~-~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~~~~l~~~~~~~~~p~~~~~~~ 398 (953)
..++..... .-+....||| ++..++..+.+ +.+.+||+. |+... +..+.
T Consensus 138 ~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd-------------~~l~lwdvr~~gk~~~-i~ah~------------- 190 (311)
T KOG0277|consen 138 NSVQTFNGHNSCIYQAAFSPHIPNLFASASGD-------------GTLRLWDVRSPGKFMS-IEAHN------------- 190 (311)
T ss_pred cceEeecCCccEEEEEecCCCCCCeEEEccCC-------------ceEEEEEecCCCceeE-EEecc-------------
Confidence 333334434 6677889999 56666666644 378899987 33222 33222
Q ss_pred cCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEeccc
Q 002209 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT 478 (953)
Q Consensus 399 ~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~ 478 (953)
..+....|+.=...+++. + +..+.|+.||+.... ...-.|..+...+..+.|||--..|+.+...+
T Consensus 191 ~Eil~cdw~ky~~~vl~T-----g-------~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD- 256 (311)
T KOG0277|consen 191 SEILCCDWSKYNHNVLAT-----G-------GVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYD- 256 (311)
T ss_pred ceeEeecccccCCcEEEe-----c-------CCCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhcccc-
Confidence 112345687766667665 1 335678899972221 11233566777888999999988877766655
Q ss_pred CceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEecc-CCCEEEEEee
Q 002209 479 RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTS-TGTYVIAKIK 529 (953)
Q Consensus 479 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Sp-DG~~l~~~~~ 529 (953)
...+||...... ......+...+-+.+ +-||+ ++.+++-...
T Consensus 257 mT~riw~~~~~d---s~~e~~~~HtEFv~g------~Dws~~~~~~vAs~gW 299 (311)
T KOG0277|consen 257 MTVRIWDPERQD---SAIETVDHHTEFVCG------LDWSLFDPGQVASTGW 299 (311)
T ss_pred ceEEecccccch---hhhhhhhccceEEec------cccccccCceeeeccc
Confidence 223666544222 122223344444444 33544 5566766554
|
|
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.4e-06 Score=85.65 Aligned_cols=182 Identities=14% Similarity=0.098 Sum_probs=107.1
Q ss_pred eEEEEEEcCCCcEEEEEEEcCC-CCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 639 KELIKYQRKDGVQLSATLYLPP-GYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~-~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
-.+..+++.||.++...+.--. +..+.. .-+||++-|.. .|...+- +..=++.||.|+.
T Consensus 214 G~R~kiks~dgneiDtmF~d~r~n~~~ng---q~LvIC~EGNA---------------GFYEvG~--m~tP~~lgYsvLG 273 (517)
T KOG1553|consen 214 GQRLKIKSSDGNEIDTMFLDGRPNQSGNG---QDLVICFEGNA---------------GFYEVGV--MNTPAQLGYSVLG 273 (517)
T ss_pred CeEEEEeecCCcchhheeecCCCCCCCCC---ceEEEEecCCc---------------cceEeee--ecChHHhCceeec
Confidence 3577888889998887666321 212211 34677776631 1222221 1122678999999
Q ss_pred cCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC
Q 002209 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~ 797 (953)
.+.. |++.+.+- .+..+....+.+++++.++.-....+.|.+.|+|-||+-++|+|..+|+ ++|+|+.+.+-|..
T Consensus 274 wNhP---GFagSTG~-P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDll 348 (517)
T KOG1553|consen 274 WNHP---GFAGSTGL-PYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLL 348 (517)
T ss_pred cCCC---CccccCCC-CCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhh
Confidence 5554 44444221 1223334445577788777644557889999999999999999999987 99999987654422
Q ss_pred CCCc-Cccccc-chhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCC
Q 002209 798 LTPF-GFQNED-RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG 845 (953)
Q Consensus 798 ~~~~-~~~~~~-~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~ 845 (953)
.... .++... +........+...+-.+.+.+.+.|+++|--++|+++.
T Consensus 349 pLAl~rMP~~~~giV~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIit 398 (517)
T KOG1553|consen 349 PLALFRMPTFFSGIVEHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIIT 398 (517)
T ss_pred hHHhhhchHHHHHHHHHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhh
Confidence 1110 011100 00011112222223334456678999999999998864
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.8e-05 Score=84.68 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=63.2
Q ss_pred CcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCC
Q 002209 365 PRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV 443 (953)
Q Consensus 365 ~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 443 (953)
...|.+||+.+...+ .+..+. .++.+++|||||+.++-. ...+.|+++. |.
T Consensus 699 d~Ti~lWDl~~~~~~~~l~gHt-------------dqIf~~AWSpdGr~~AtV-------------cKDg~~rVy~--Pr 750 (1012)
T KOG1445|consen 699 DSTIELWDLANAKLYSRLVGHT-------------DQIFGIAWSPDGRRIATV-------------CKDGTLRVYE--PR 750 (1012)
T ss_pred cceeeeeehhhhhhhheeccCc-------------CceeEEEECCCCcceeee-------------ecCceEEEeC--CC
Confidence 348999999854332 344332 456789999999998877 4566888887 44
Q ss_pred CCCCceEEeecc--cccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 444 QGEGPEILHKLD--LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 444 ~g~~~~~l~~~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
.+.++..-..+. .+-..+.|.=||+.|+....+...+.+|-.++.++
T Consensus 751 s~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 751 SREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred CCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 443332222221 22234889999999998877665444566666554
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.16 E-value=5e-05 Score=76.02 Aligned_cols=119 Identities=12% Similarity=0.158 Sum_probs=73.4
Q ss_pred CCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccC
Q 002209 330 PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 330 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
+...+.++.|.|.|.+|++...+. .+.+||+++-+.-.-.+ |.. .+..++..+.+|+.
T Consensus 215 d~~~vrsiSfHPsGefllvgTdHp-------------~~rlYdv~T~Qcfvsan-Pd~--------qht~ai~~V~Ys~t 272 (430)
T KOG0640|consen 215 DTEPVRSISFHPSGEFLLVGTDHP-------------TLRLYDVNTYQCFVSAN-PDD--------QHTGAITQVRYSST 272 (430)
T ss_pred ccceeeeEeecCCCceEEEecCCC-------------ceeEEeccceeEeeecC-ccc--------ccccceeEEEecCC
Confidence 337788999999999999988554 78899998655433222 111 22245667889998
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe-e-cccccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-K-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~-~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
|+ +|.+. +..+.|-+||= ..+.-.+.+. . +...+-+..|+.+||+|+.+..+... .||-+.
T Consensus 273 ~~--lYvTa-----------SkDG~IklwDG--VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v--kLWEi~ 335 (430)
T KOG0640|consen 273 GS--LYVTA-----------SKDGAIKLWDG--VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV--KLWEIS 335 (430)
T ss_pred cc--EEEEe-----------ccCCcEEeecc--ccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee--eeeeec
Confidence 87 34322 34557778871 1111112221 1 22345568899999999887654432 566554
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=5e-05 Score=79.85 Aligned_cols=53 Identities=17% Similarity=0.059 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcE-EEEEeChHHHHHHHHHHhCCCcccEEEEccc
Q 002209 738 QLVACAEAAVEEVVRRGVAHPSKI-AVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (953)
Q Consensus 738 ~~~~D~~~~~~~l~~~~~~d~~~i-~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (953)
.-+.|.+++-+.|.+.-.| +++ +|+|.||||+.++..+..+|++++.+|.++.
T Consensus 127 ~ti~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~ 180 (368)
T COG2021 127 ITIRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIAT 180 (368)
T ss_pred ccHHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecc
Confidence 4477888887777665444 355 4999999999999999999999988887775
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00014 Score=73.54 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=61.8
Q ss_pred CcccccccCC-CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
+-++.++||| |.+.+++.+.. +.+-++.-++..+-.+.. +..+|+..+.|-+||
T Consensus 208 giisc~a~sP~~~~~~a~gsY~-------------q~~giy~~~~~~pl~llg------------gh~gGvThL~~~edG 262 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYG-------------QRVGIYNDDGRRPLQLLG------------GHGGGVTHLQWCEDG 262 (406)
T ss_pred ceeeeeeccCCCCcceeeeccc-------------ceeeeEecCCCCceeeec------------ccCCCeeeEEeccCc
Confidence 4567788999 55677766622 244455444443333222 233677889999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCce-EEeecccccC---CeeeccCCceEEEEEecccCceEEEEE
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKLDLRYG---GISWCDDSLALVYESWYKTRRTRTWVI 486 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~-~l~~~~~~~~---~~~~SpDg~~l~~~~~~~~~~~~l~~~ 486 (953)
+++.... ...+.|..||+ ...+.+. .|..+-.+.+ .+...|+|+.|+....++. .++|..
T Consensus 263 n~lfsGa------------Rk~dkIl~WDi--R~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~--V~vwdl 326 (406)
T KOG2919|consen 263 NKLFSGA------------RKDDKILCWDI--RYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGS--VRVWDL 326 (406)
T ss_pred Ceecccc------------cCCCeEEEEee--hhccchhhhhhhhccCccceEEEecCCCCceeeccCCCcc--EEEEec
Confidence 9654331 12357788886 2222221 1222222111 1445688988887644432 255544
Q ss_pred c
Q 002209 487 S 487 (953)
Q Consensus 487 d 487 (953)
+
T Consensus 327 k 327 (406)
T KOG2919|consen 327 K 327 (406)
T ss_pred C
Confidence 3
|
|
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=79.93 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=79.7
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEE
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILG 717 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~ 717 (953)
.+.+.+++.++ ++..++-+|.. ..-|++++.|||..... .|. .++..+.. .-+.+++
T Consensus 50 kedv~i~~~~~-t~n~Y~t~~~~------t~gpil~l~HG~G~S~L-----------SfA----~~a~el~s~~~~r~~a 107 (343)
T KOG2564|consen 50 KEDVSIDGSDL-TFNVYLTLPSA------TEGPILLLLHGGGSSAL-----------SFA----IFASELKSKIRCRCLA 107 (343)
T ss_pred ccccccCCCcc-eEEEEEecCCC------CCccEEEEeecCcccch-----------hHH----HHHHHHHhhcceeEEE
Confidence 45566665554 67777877752 23799999999732211 121 22333333 4577788
Q ss_pred cCCCCCCCCCChhhh---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEc
Q 002209 718 GPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIAR 790 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~ 790 (953)
+|.+|+|++... +-..+.+..|+.+.++++-.. ++.+|+|+||||||.++.+.+... |. +.+++.+
T Consensus 108 ---~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~vi 178 (343)
T KOG2564|consen 108 ---LDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVI 178 (343)
T ss_pred ---eeccccCccccCChhhcCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhhhchh-hhceEEE
Confidence 666889887432 223567889999888887532 346899999999999999888753 33 4444443
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.4e-05 Score=79.10 Aligned_cols=227 Identities=16% Similarity=0.172 Sum_probs=134.8
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCC-ceeecccCCCccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-KARPLFQSPDIYL 242 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g-~~~~lt~~~~~~~ 242 (953)
.|++||..+ |+. .+.|.+++++ +...+++.-|+.|+.++. ...+.++|.++- +..+.....+..
T Consensus 131 tikv~D~~t-g~~--e~~LrGHt~s--v~di~~~a~Gk~l~tcSs---------Dl~~~LWd~~~~~~c~ks~~gh~h~- 195 (406)
T KOG0295|consen 131 TIKVFDTET-GEL--ERSLRGHTDS--VFDISFDASGKYLATCSS---------DLSAKLWDFDTFFRCIKSLIGHEHG- 195 (406)
T ss_pred eEEEEEccc-hhh--hhhhhccccc--eeEEEEecCccEEEecCC---------ccchhheeHHHHHHHHHHhcCcccc-
Confidence 689999854 332 4556666544 888999999999998663 333556665441 222222222222
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
+..+.+-|-|..|+.. .+| ..|...++
T Consensus 196 ---vS~V~f~P~gd~ilS~----------------------------------------srD---------~tik~We~~ 223 (406)
T KOG0295|consen 196 ---VSSVFFLPLGDHILSC----------------------------------------SRD---------NTIKAWECD 223 (406)
T ss_pred ---eeeEEEEecCCeeeec----------------------------------------ccc---------cceeEEecc
Confidence 7788888999888744 222 23445555
Q ss_pred CC-ceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEec-cCCCcccCCccccccc
Q 002209 322 DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELC-DLPLAEDIPIAFNSVR 398 (953)
Q Consensus 322 ~g-~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~-~~~~~~~~p~~~~~~~ 398 (953)
+| ....+... ..+..++.+-||..+|..+++ ..+.+|-+.+++.+.+- .+. .|
T Consensus 224 tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d-------------qtl~vW~~~t~~~k~~lR~hE----h~------- 279 (406)
T KOG0295|consen 224 TGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND-------------QTLRVWVVATKQCKAELREHE----HP------- 279 (406)
T ss_pred cceeEEeccCchHhEEEEEecCCeeEEEecCCC-------------ceEEEEEeccchhhhhhhccc----cc-------
Confidence 55 55556555 788889999999887766644 38999999876544322 221 11
Q ss_pred cCccceeeccCCCCceE--EEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEec
Q 002209 399 KGMRSINWRSDKPSTLY--WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 399 ~~~~~~~wspDg~~i~~--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
+.-++|.|+...--. .....+++......+.+..|.+||+ .+|.-.-.|..++..+.+++|+|-|++|+....+
T Consensus 280 --vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv--~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD 355 (406)
T KOG0295|consen 280 --VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV--STGMCLFTLVGHDNWVRGVAFSPGGKYILSCADD 355 (406)
T ss_pred --eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec--cCCeEEEEEecccceeeeeEEcCCCeEEEEEecC
Confidence 123556665431100 0001111112222234456788886 3333233456778888999999999999988766
Q ss_pred ccCceEEEEEc
Q 002209 477 KTRRTRTWVIS 487 (953)
Q Consensus 477 ~~~~~~l~~~d 487 (953)
++- ++|.+.
T Consensus 356 ktl--rvwdl~ 364 (406)
T KOG0295|consen 356 KTL--RVWDLK 364 (406)
T ss_pred CcE--EEEEec
Confidence 543 566554
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.6e-05 Score=75.17 Aligned_cols=196 Identities=16% Similarity=0.195 Sum_probs=116.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccc----c--c--------cc-------------eeceEEecCCCCCCcceeee
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELA----R--P--------EE-------------KLAGLRIDGKCNTRSRMSFY 162 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~----~--~--------~~-------------~~~~~~~~~~~~~~~~~~~~ 162 (953)
..+..+|||||..+|..+.+.-.-+.+.. + | .. .+.-+.|-|.+......+.+
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence 45678899999999987766222222111 0 1 00 11224444554444444444
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+.|.++|..- . ...+....+.+-..+...+|.|.|..|+.. .....+.++|+++-++- +...|....
T Consensus 194 ~tvKlFDfsK-~--saKrA~K~~qd~~~vrsiSfHPsGefllvg---------TdHp~~rlYdv~T~Qcf-vsanPd~qh 260 (430)
T KOG0640|consen 194 NTVKLFDFSK-T--SAKRAFKVFQDTEPVRSISFHPSGEFLLVG---------TDHPTLRLYDVNTYQCF-VSANPDDQH 260 (430)
T ss_pred CeEEEEeccc-H--HHHHHHHHhhccceeeeEeecCCCceEEEe---------cCCCceeEEeccceeEe-eecCccccc
Confidence 5677888732 1 112222234454578899999999999984 34778888888876553 223355445
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
.+.+..+.+|+.|+.-+..+ ..+.|-++|-
T Consensus 261 t~ai~~V~Ys~t~~lYvTaS-------------------------------------------------kDG~IklwDGV 291 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTAS-------------------------------------------------KDGAIKLWDGV 291 (430)
T ss_pred ccceeEEEecCCccEEEEec-------------------------------------------------cCCcEEeeccc
Confidence 55577888999887555331 1123334443
Q ss_pred CC-ceeEeCCC---CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEE
Q 002209 322 DG-TVKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE 380 (953)
Q Consensus 322 ~g-~~~~l~~~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~ 380 (953)
++ -++.+.+. ..+.+..|+.|||+|+.+..+. .+.+|.+.++..-.
T Consensus 292 S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS-------------~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 292 SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS-------------TVKLWEISTGRMLK 341 (430)
T ss_pred cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc-------------eeeeeeecCCceEE
Confidence 32 22223221 5677889999999998776443 78999998655433
|
|
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.1e-05 Score=76.18 Aligned_cols=122 Identities=19% Similarity=0.160 Sum_probs=88.3
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---------CCCcccEEEEcccCCCCCCCCcCcccccchhhhh
Q 002209 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH---------APHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEA 813 (953)
Q Consensus 743 ~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~---------~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~ 813 (953)
+....+|+.+++.-| +|+|.|.|+.|+..+++. .| -|+-+|.++|+.-...
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P-~~kF~v~~SGf~~~~~--------------- 151 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQP-PFKFAVFISGFKFPSK--------------- 151 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCC-CeEEEEEEecCCCCcc---------------
Confidence 444556777887767 899999999999999882 12 3688888888643210
Q ss_pred HHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 002209 814 TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (953)
Q Consensus 814 ~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~f 893 (953)
.+. -..+...+++|.|-+.|+.|.+|| ...+..+++..+.. .++.-|| ||.+.. .....+.+.+|
T Consensus 152 --~~~---~~~~~~~i~~PSLHi~G~~D~iv~--~~~s~~L~~~~~~a----~vl~Hpg-gH~VP~---~~~~~~~i~~f 216 (230)
T KOG2551|consen 152 --KLD---ESAYKRPLSTPSLHIFGETDTIVP--SERSEQLAESFKDA----TVLEHPG-GHIVPN---KAKYKEKIADF 216 (230)
T ss_pred --hhh---hhhhccCCCCCeeEEecccceeec--chHHHHHHHhcCCC----eEEecCC-CccCCC---chHHHHHHHHH
Confidence 000 011234578999999999999998 89999999999876 5556665 998743 34667889999
Q ss_pred HHHhcc
Q 002209 894 LQKYCV 899 (953)
Q Consensus 894 l~~~l~ 899 (953)
|...+.
T Consensus 217 i~~~~~ 222 (230)
T KOG2551|consen 217 IQSFLQ 222 (230)
T ss_pred HHHHHH
Confidence 988764
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.5e-05 Score=74.98 Aligned_cols=128 Identities=18% Similarity=0.217 Sum_probs=71.3
Q ss_pred ceEEEEEc-CCceeEeCCC-------CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc--CceEEEecc
Q 002209 314 TQLVLVSL-DGTVKEIGPP-------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCD 383 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~-------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~~~~l~~ 383 (953)
.-|.++|. +|+.+.-... ....+++|||||.+|+..- ...|.++|+. |......+.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--------------krcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--------------KRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--------------cceEEEeeccCCCCCCcchhh
Confidence 34777788 8876644322 2234789999999987543 2378888884 322222221
Q ss_pred CCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEEeecccccCCee
Q 002209 384 LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGIS 462 (953)
Q Consensus 384 ~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~ 462 (953)
...... +..+-..-++|||-....+-+-.. ..+-.||..+ +..+ ..+..+.+.+..+.
T Consensus 199 ~~~~k~------gq~giisc~a~sP~~~~~~a~gsY----------~q~~giy~~~-----~~~pl~llggh~gGvThL~ 257 (406)
T KOG2919|consen 199 VTKGKF------GQKGIISCFAFSPMDSKTLAVGSY----------GQRVGIYNDD-----GRRPLQLLGGHGGGVTHLQ 257 (406)
T ss_pred hhcccc------cccceeeeeeccCCCCcceeeecc----------cceeeeEecC-----CCCceeeecccCCCeeeEE
Confidence 111000 011112347888876644443000 1122344443 3444 44566677888999
Q ss_pred eccCCceEEEEEec
Q 002209 463 WCDDSLALVYESWY 476 (953)
Q Consensus 463 ~SpDg~~l~~~~~~ 476 (953)
|.+||..|+..+..
T Consensus 258 ~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 258 WCEDGNKLFSGARK 271 (406)
T ss_pred eccCcCeecccccC
Confidence 99999998776543
|
|
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00011 Score=78.69 Aligned_cols=202 Identities=17% Similarity=0.117 Sum_probs=111.6
Q ss_pred EEEEEc-CCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhh
Q 002209 653 SATLYL-PPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA 731 (953)
Q Consensus 653 ~~~l~~-P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~ 731 (953)
..|++. |..+.++. -|+|||+|||.+.......|+.. -..... +.. ..+++..||- ....+ .
T Consensus 107 s~Wlvk~P~~~~pk~---DpVlIYlHGGGY~l~~~p~qi~~--------L~~i~~-~l~-~~SILvLDYs-Lt~~~---~ 169 (374)
T PF10340_consen 107 SYWLVKAPNRFKPKS---DPVLIYLHGGGYFLGTTPSQIEF--------LLNIYK-LLP-EVSILVLDYS-LTSSD---E 169 (374)
T ss_pred eEEEEeCCcccCCCC---CcEEEEEcCCeeEecCCHHHHHH--------HHHHHH-HcC-CCeEEEEecc-ccccc---c
Confidence 457777 76655544 49999999985443222111110 001111 122 4566665552 11100 0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC-----CcccEEEEcccCCCCCCCCc---C-
Q 002209 732 NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP-----HLFCCGIARSGAYNRTLTPF---G- 802 (953)
Q Consensus 732 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p-----~~~~a~v~~~~~~d~~~~~~---~- 802 (953)
...-++.-+.++.+..++|.+.. ..++|.++|-|+||.+++.++.... ..-+.+|+++|.++...... .
T Consensus 170 ~~~~yPtQL~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~ 247 (374)
T PF10340_consen 170 HGHKYPTQLRQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSS 247 (374)
T ss_pred CCCcCchHHHHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCcc
Confidence 11223566678889999998432 2468999999999999988775321 12578999999877552110 0
Q ss_pred cc-cccc------hhhhhHHHHHh---------cCcccccCC---------C--CCcEEEEEeCCCCCCCCchHHHHHHH
Q 002209 803 FQ-NEDR------TLWEATSTYVE---------MSPFMSANK---------L--KKPILLVHGEEDNNSGTLTMQSDRFF 855 (953)
Q Consensus 803 ~~-~~~~------~~~~~~~~~~~---------~sp~~~~~~---------i--~~P~Li~~G~~D~~v~~~~~~~~~~~ 855 (953)
+. .... ......+.|.. ..|...... | +.-++|+.|+++- +-++.+++.
T Consensus 248 ~~~n~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Ev----frddI~~~~ 323 (374)
T PF10340_consen 248 YHDNEKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEV----FRDDILEWA 323 (374)
T ss_pred ccccccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCccc----cHHHHHHHH
Confidence 00 0000 00000011111 111111110 1 2469999999773 378899999
Q ss_pred HHHHhCCC-----cEEEEEeCCCCccC
Q 002209 856 NALKGHGA-----LCRLVILPFESHGY 877 (953)
Q Consensus 856 ~~l~~~g~-----~~~~~~~~~~~H~~ 877 (953)
+.+...+. ..++.+-+++.|.-
T Consensus 324 ~~~~~~~~~~~~~~~nv~~~~~G~Hi~ 350 (374)
T PF10340_consen 324 KKLNDVKPNKFSNSNNVYIDEGGIHIG 350 (374)
T ss_pred HHHhhcCccccCCcceEEEecCCcccc
Confidence 99985542 36777788888864
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0022 Score=67.45 Aligned_cols=221 Identities=11% Similarity=0.047 Sum_probs=103.7
Q ss_pred ccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcc-cCCccccccccCccceeeccCCCC
Q 002209 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE-DIPIAFNSVRKGMRSINWRSDKPS 412 (953)
Q Consensus 334 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~-~~p~~~~~~~~~~~~~~wspDg~~ 412 (953)
....++|.|||++++..... ...|-++|++.++.......|+.. ..| +.+++
T Consensus 97 ~~~~~ls~dgk~~~V~N~TP-----------a~SVtVVDl~~~kvv~ei~~PGC~~iyP--------------~~~~~-- 149 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTP-----------ATSVTVVDLAAKKVVGEIDTPGCWLIYP--------------SGNRG-- 149 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESS-----------SEEEEEEETTTTEEEEEEEGTSEEEEEE--------------EETTE--
T ss_pred ccceEEccCCcEEEEEccCC-----------CCeEEEEECCCCceeeeecCCCEEEEEe--------------cCCCc--
Confidence 34578999999998876432 226889999976654444434321 111 11111
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc-----cccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-----LRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~-----~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
|. ...+.+.+..+.+ ..+|...+..+... .-...++++.++.+++|.+..+ .+|.++
T Consensus 150 --F~-----------~lC~DGsl~~v~L-d~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G----~v~~~d 211 (342)
T PF06433_consen 150 --FS-----------MLCGDGSLLTVTL-DADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEG----NVYSAD 211 (342)
T ss_dssp --EE-----------EEETTSCEEEEEE-TSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTS----EEEEEE
T ss_pred --eE-----------EEecCCceEEEEE-CCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCC----EEEEEe
Confidence 11 1122333434433 12333322222211 1123456777777788876543 799999
Q ss_pred CCCCCCCcEEeecCCC-ccccCCCCCCCeEeccCCCE-EEEEeeeccCCCcEEEEecC-CCCCCCCCCeEEEEECCCCce
Q 002209 488 PGSKDVAPRILFDRSS-EDVYSDPGSPMMRRTSTGTY-VIAKIKKENDEGTYILLNGN-GATPEGNIPFLDLFDINTGSK 564 (953)
Q Consensus 488 ~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~SpDG~~-l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~d~~~~~~ 564 (953)
+.+. .+.....-+. .+.. .. -.|-|-|-. +++.. ....-|+++... ..+-+..-..+|++|+++++.
T Consensus 212 lsg~--~~~~~~~~~~~t~~e---~~--~~WrPGG~Q~~A~~~---~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr 281 (342)
T PF06433_consen 212 LSGD--SAKFGKPWSLLTDAE---KA--DGWRPGGWQLIAYHA---ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR 281 (342)
T ss_dssp ETTS--SEEEEEEEESS-HHH---HH--TTEEE-SSS-EEEET---TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE
T ss_pred ccCC--cccccCcccccCccc---cc--cCcCCcceeeeeecc---ccCeEEEEecCCCCCCccCCceEEEEEECCCCeE
Confidence 8875 2222211100 0000 00 115555533 22321 011222222111 111112245799999999987
Q ss_pred EEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeE
Q 002209 565 ERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (953)
Q Consensus 565 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~ 623 (953)
..-+..+.. .. +.+.|-|.+-++|..+... ..|+++|..+|+...
T Consensus 282 v~Ri~l~~~-----~~-------Si~Vsqd~~P~L~~~~~~~--~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 282 VARIPLEHP-----ID-------SIAVSQDDKPLLYALSAGD--GTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEEEEE-----ES-------EEEEESSSS-EEEEEETTT--TEEEEEETTT--EEE
T ss_pred EEEEeCCCc-----cc-------eEEEccCCCcEEEEEcCCC--CeEEEEeCcCCcEEe
Confidence 766654422 11 1244666776777665432 579999999987543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.6e-05 Score=86.30 Aligned_cols=79 Identities=9% Similarity=-0.070 Sum_probs=59.0
Q ss_pred CcEEEEcCCCCCCCCCChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEE
Q 002209 712 GFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (953)
Q Consensus 712 G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (953)
.|.|+++|. .|+|.+... ..+......++.+.+++|.+...++.+++.|+||||||.+|..++.+.|.++..++.
T Consensus 73 d~nVI~VDw---~g~g~s~y~~a~~~t~~vg~~la~lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItg 149 (442)
T TIGR03230 73 SANVIVVDW---LSRAQQHYPTSAAYTKLVGKDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITG 149 (442)
T ss_pred CCEEEEEEC---CCcCCCCCccccccHHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEE
Confidence 599999554 555554322 122344456777788888765445678999999999999999999999999999998
Q ss_pred cccC
Q 002209 790 RSGA 793 (953)
Q Consensus 790 ~~~~ 793 (953)
..|+
T Consensus 150 LDPA 153 (442)
T TIGR03230 150 LDPA 153 (442)
T ss_pred EcCC
Confidence 8875
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.9e-05 Score=78.88 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=47.4
Q ss_pred cEEEEcCCCCCCCCCChhhhh-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcc
Q 002209 713 FAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (953)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (953)
|.|+. .+.+|+|.+. .. ........++...++ ..+ ..++.++|||+||.+++.++.++|+.++++|..+
T Consensus 51 ~~~~~---~d~~g~g~s~-~~~~~~~~~~~~~~~~~~---~~~---~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~ 120 (282)
T COG0596 51 YRVIA---PDLRGHGRSD-PAGYSLSAYADDLAALLD---ALG---LEKVVLVGHSMGGAVALALALRHPDRVRGLVLIG 120 (282)
T ss_pred eEEEE---ecccCCCCCC-cccccHHHHHHHHHHHHH---HhC---CCceEEEEecccHHHHHHHHHhcchhhheeeEec
Confidence 89998 4556777764 00 011111333333333 222 2349999999999999999999999999999888
Q ss_pred cC
Q 002209 792 GA 793 (953)
Q Consensus 792 ~~ 793 (953)
+.
T Consensus 121 ~~ 122 (282)
T COG0596 121 PA 122 (282)
T ss_pred CC
Confidence 54
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0027 Score=66.10 Aligned_cols=231 Identities=16% Similarity=0.087 Sum_probs=116.9
Q ss_pred eEEEEccCCCCCCceeeeecCCCCC-cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 165 IGIHQLFPDGKLGQEIEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 165 i~i~~~~~~g~~~~~~~l~~~~~~~-~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
++++|..+ | .....+. -+.+. ...+-.|||||++|+.+.+. -..+...|-++|+.. ..+++-..+..++.
T Consensus 30 ~~v~D~~~-g--~~~~~~~-a~~gRHFyGHg~fs~dG~~LytTEnd----~~~g~G~IgVyd~~~-~~~ri~E~~s~GIG 100 (305)
T PF07433_consen 30 ALVFDCRT-G--QLLQRLW-APPGRHFYGHGVFSPDGRLLYTTEND----YETGRGVIGVYDAAR-GYRRIGEFPSHGIG 100 (305)
T ss_pred EEEEEcCC-C--ceeeEEc-CCCCCEEecCEEEcCCCCEEEEeccc----cCCCcEEEEEEECcC-CcEEEeEecCCCcC
Confidence 46777643 2 1222333 23333 56678999999988776542 255678888999883 34444333332210
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~ 322 (953)
...+.|.|||+.|++. +++.. .....++. ++..-.....|..+|. +
T Consensus 101 --PHel~l~pDG~tLvVA---NGGI~-----------Thpd~GR~-----------------kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 101 --PHELLLMPDGETLVVA---NGGIE-----------THPDSGRA-----------------KLNLDTMQPSLVYLDARS 147 (305)
T ss_pred --hhhEEEcCCCCEEEEE---cCCCc-----------cCcccCce-----------------ecChhhcCCceEEEecCC
Confidence 2378899999888876 11110 00000000 0000014467888887 8
Q ss_pred Cce-eE--eCCC---CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccc
Q 002209 323 GTV-KE--IGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNS 396 (953)
Q Consensus 323 g~~-~~--l~~~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~ 396 (953)
|++ .+ +... -.+..+++++||.-++-.....+... ..-=+.+++..+ ..+.+.. +.. ....
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~------~~PLva~~~~g~-~~~~~~~-p~~-----~~~~ 214 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD------APPLVALHRRGG-ALRLLPA-PEE-----QWRR 214 (305)
T ss_pred CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCc------cCCeEEEEcCCC-cceeccC-ChH-----HHHh
Confidence 863 22 3322 46788999999974443332221111 111222332221 1222211 100 0112
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCcccccccC-CeEEEEecCCCCCCCceEEeecccccCCeeeccCC
Q 002209 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPR-DIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDS 467 (953)
Q Consensus 397 ~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~-~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg 467 (953)
....+.++++++||..++.. +.+ +.+.+||. ..++..... .-.+...++-.+++
T Consensus 215 l~~Y~gSIa~~~~g~~ia~t-------------sPrGg~~~~~d~---~tg~~~~~~-~l~D~cGva~~~~~ 269 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVT-------------SPRGGRVAVWDA---ATGRLLGSV-PLPDACGVAPTDDG 269 (305)
T ss_pred hCCceEEEEEeCCCCEEEEE-------------CCCCCEEEEEEC---CCCCEeecc-ccCceeeeeecCCc
Confidence 33445689999999987776 333 46678875 434332221 12234456666666
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00056 Score=73.10 Aligned_cols=267 Identities=11% Similarity=0.125 Sum_probs=155.4
Q ss_pred CcccceEeccCC-CeEEEEEeeccccCCCCcceEEEEECCCCceee-cccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 189 AKLNFVTWSQDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP-LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 189 ~~~~~~~wSPDG-~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
..+....|||.. -.+|.++ ...+-+++..+-..++ +..+... +.+..|-.||+.++..
T Consensus 27 ~~vssl~fsp~~P~d~aVt~----------S~rvqly~~~~~~~~k~~srFk~~-----v~s~~fR~DG~LlaaG----- 86 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTS----------SVRVQLYSSVTRSVRKTFSRFKDV-----VYSVDFRSDGRLLAAG----- 86 (487)
T ss_pred CcceeEecCCCCCCceEEec----------ccEEEEEecchhhhhhhHHhhccc-----eeEEEeecCCeEEEcc-----
Confidence 468889999832 2345443 2344444544544444 3333332 6688898999999865
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC-CcccccccCCCC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDE 343 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDG 343 (953)
| ..+.+-++|. +. ..+.+... ..+....|+|++
T Consensus 87 -------------------------------------D-------~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d 122 (487)
T KOG0310|consen 87 -------------------------------------D-------ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQD 122 (487)
T ss_pred -------------------------------------C-------CcCcEEEeccccHHHHHHHhhccCceeEEEecccC
Confidence 0 2234445555 32 23333333 566677899988
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
..++.+..++ ..+.+||+++..+. .+..+ ...+|..+|+|-...|++. |
T Consensus 123 ~t~l~s~sDd------------~v~k~~d~s~a~v~~~l~~h-------------tDYVR~g~~~~~~~hivvt-----G 172 (487)
T KOG0310|consen 123 NTMLVSGSDD------------KVVKYWDLSTAYVQAELSGH-------------TDYVRCGDISPANDHIVVT-----G 172 (487)
T ss_pred CeEEEecCCC------------ceEEEEEcCCcEEEEEecCC-------------cceeEeeccccCCCeEEEe-----c
Confidence 8887776543 36788999877652 22222 2456788999988878776 1
Q ss_pred CCcccccccCCeEEEEecCCCCCCCceEE-eecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecC
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~~~l-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 501 (953)
+.++.|.+||. .....+.+ .++...+..+.+-|.|..|+.++ +. .+.++|+.+|. +.......
T Consensus 173 -------sYDg~vrl~Dt---R~~~~~v~elnhg~pVe~vl~lpsgs~iasAg---Gn--~vkVWDl~~G~-qll~~~~~ 236 (487)
T KOG0310|consen 173 -------SYDGKVRLWDT---RSLTSRVVELNHGCPVESVLALPSGSLIASAG---GN--SVKVWDLTTGG-QLLTSMFN 236 (487)
T ss_pred -------CCCceEEEEEe---ccCCceeEEecCCCceeeEEEcCCCCEEEEcC---CC--eEEEEEecCCc-eehhhhhc
Confidence 33457888986 22212333 46677788899999999888763 22 45555666442 11111111
Q ss_pred CCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEe
Q 002209 502 SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVA 581 (953)
Q Consensus 502 ~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~ 581 (953)
+...+.+ +.+..||+.|+....++ ++.+||..+=+..-=|.-.+. +..
T Consensus 237 H~KtVTc------L~l~s~~~rLlS~sLD~---------------------~VKVfd~t~~Kvv~s~~~~~p-----vLs 284 (487)
T KOG0310|consen 237 HNKTVTC------LRLASDSTRLLSGSLDR---------------------HVKVFDTTNYKVVHSWKYPGP-----VLS 284 (487)
T ss_pred ccceEEE------EEeecCCceEeeccccc---------------------ceEEEEccceEEEEeeecccc-----eee
Confidence 2222333 66777888887776543 477888554443333332221 221
Q ss_pred eccCCccccccccCCEEEEEEec
Q 002209 582 LMSDQTEGDLYLNQLKILTSKES 604 (953)
Q Consensus 582 ~~~~~~~~~~s~dg~~l~~~~~~ 604 (953)
.++|||++.++.-.+.
T Consensus 285 -------iavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 285 -------IAVSPDDQTVVIGMSN 300 (487)
T ss_pred -------EEecCCCceEEEeccc
Confidence 3578888877764443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00055 Score=76.81 Aligned_cols=201 Identities=16% Similarity=0.097 Sum_probs=122.2
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+....+|.|...|+. . .+..|-+|+.++.+..+-..... +-...|-|.++.|+...
T Consensus 374 ~dVRsl~vS~d~~~~~S-g---------a~~SikiWn~~t~kciRTi~~~y------~l~~~Fvpgd~~Iv~G~------ 431 (888)
T KOG0306|consen 374 SDVRSLCVSSDSILLAS-G---------AGESIKIWNRDTLKCIRTITCGY------ILASKFVPGDRYIVLGT------ 431 (888)
T ss_pred hheeEEEeecCceeeee-c---------CCCcEEEEEccCcceeEEecccc------EEEEEecCCCceEEEec------
Confidence 37888899977654443 2 24567777777766543322222 44666889998888661
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-CcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDG~~ 345 (953)
..+.|-++|+ +... ..+... +.+.+++.+||++.
T Consensus 432 -------------------------------------------k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g 468 (888)
T KOG0306|consen 432 -------------------------------------------KNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKG 468 (888)
T ss_pred -------------------------------------------cCCceEEEEeehhhhhhhhhccccceeeeeecCCCCc
Confidence 3356777787 5532 222223 77888999999999
Q ss_pred EEEEEecCCccccccCCCCCcceEEEecc------CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTD------GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~------g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~ 419 (953)
.+..+.+. .|..||.. |.+.+.|.-.... .. .....+..+++||||+.++...
T Consensus 469 ~vT~saDk-------------tVkfWdf~l~~~~~gt~~k~lsl~~~r---tL---el~ddvL~v~~Spdgk~LaVsL-- 527 (888)
T KOG0306|consen 469 FVTGSADK-------------TVKFWDFKLVVSVPGTQKKVLSLKHTR---TL---ELEDDVLCVSVSPDGKLLAVSL-- 527 (888)
T ss_pred eEEecCCc-------------EEEEEeEEEEeccCcccceeeeeccce---EE---eccccEEEEEEcCCCcEEEEEe--
Confidence 99888665 66677653 2222222211100 00 0112335689999999887651
Q ss_pred ccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
. +..-.+|.+| +=.-...|.++...+.++..|||++.|+..+-+.+ -.+|-+|...
T Consensus 528 L---------dnTVkVyflD----tlKFflsLYGHkLPV~smDIS~DSklivTgSADKn--VKiWGLdFGD 583 (888)
T KOG0306|consen 528 L---------DNTVKVYFLD----TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN--VKIWGLDFGD 583 (888)
T ss_pred c---------cCeEEEEEec----ceeeeeeecccccceeEEeccCCcCeEEeccCCCc--eEEeccccch
Confidence 1 2233556555 11112235677777888999999999998776654 4888887655
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00016 Score=69.21 Aligned_cols=116 Identities=10% Similarity=0.071 Sum_probs=71.7
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC--C-cCcccccchhhhhHHHHHhcCcccccCCCCCcEEE
Q 002209 759 SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT--P-FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILL 835 (953)
Q Consensus 759 ~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~--~-~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li 835 (953)
++++|+|.|+||+.|.+++.++. ++| |++.|.+..... . .+.+.. ...+ ..+...+.. .+-....++
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~~a-VLiNPAv~P~~~L~~~ig~~~~-y~~~-~~~h~~eL~-----~~~p~r~~v 129 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--IRQ-VIFNPNLFPEENMEGKIDRPEE-YADI-ATKCVTNFR-----EKNRDRCLV 129 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--CCE-EEECCCCChHHHHHHHhCCCcc-hhhh-hHHHHHHhh-----hcCcccEEE
Confidence 47999999999999999999983 554 556676543110 0 011111 1111 111111111 011234699
Q ss_pred EEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 836 ~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
+..+.|++.+ +.++.+.|... .+..+.+|++|.|.. .+.....|.+|+.
T Consensus 130 llq~gDEvLD--yr~a~~~y~~~------y~~~v~~GGdH~f~~---fe~~l~~I~~F~~ 178 (180)
T PRK04940 130 ILSRNDEVLD--SQRTAEELHPY------YEIVWDEEQTHKFKN---ISPHLQRIKAFKT 178 (180)
T ss_pred EEeCCCcccC--HHHHHHHhccC------ceEEEECCCCCCCCC---HHHHHHHHHHHHh
Confidence 9999999998 77776665432 247789999999864 4566788888874
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0039 Score=78.38 Aligned_cols=126 Identities=11% Similarity=0.059 Sum_probs=68.4
Q ss_pred cccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC--CccccccccCccceeeccCCCC
Q 002209 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI--PIAFNSVRKGMRSINWRSDKPS 412 (953)
Q Consensus 335 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~--p~~~~~~~~~~~~~~wspDg~~ 412 (953)
..++++|++..|+++... ...|++|+..++..+.+......... ..........+..++|+|||+.
T Consensus 686 ~gVa~dp~~g~LyVad~~------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~ 753 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAG------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKE 753 (1057)
T ss_pred eEEEEecCCCeEEEEECC------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCE
Confidence 457899977666665422 23789999877665544321100000 0000111234567999999987
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc----------------------cccCCeeeccCCceE
Q 002209 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD----------------------LRYGGISWCDDSLAL 470 (953)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~----------------------~~~~~~~~SpDg~~l 470 (953)
|++. + ...+.|.++|. +++....+.... ....++++++||+ |
T Consensus 754 LYVA-D-----------s~n~~Irv~D~---~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-L 817 (1057)
T PLN02919 754 LYIA-D-----------SESSSIRALDL---KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-I 817 (1057)
T ss_pred EEEE-E-----------CCCCeEEEEEC---CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-E
Confidence 6554 2 23457888885 333322222110 1124578999997 4
Q ss_pred EEEEecccCceEEEEEcCCCC
Q 002209 471 VYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~~ 491 (953)
+++ ...+ .+|.++|.+++
T Consensus 818 YVA-Ds~N--~rIrviD~~tg 835 (1057)
T PLN02919 818 YVA-DSYN--HKIKKLDPATK 835 (1057)
T ss_pred EEE-ECCC--CEEEEEECCCC
Confidence 433 3322 37888888774
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0029 Score=79.51 Aligned_cols=212 Identities=11% Similarity=0.055 Sum_probs=116.0
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCc-------------cccccccceEEecCCeE
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI-------------YLNAIFDNFVWVNNSTL 257 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~-------------~~~~~~~~~~wspDg~~ 257 (953)
...+++.++|..|+++- .++..|.++|..++..+.+...+.. .++. ...++++|++..
T Consensus 626 P~GIavd~~gn~LYVaD--------t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~-P~gVa~dp~~g~ 696 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVAD--------TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNS-PWDVCFEPVNEK 696 (1057)
T ss_pred CcEEEEeCCCCEEEEEe--------CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCC-CeEEEEecCCCe
Confidence 45678888888766542 1356788899888776655321100 0011 125778886666
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-----
Q 002209 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----- 331 (953)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~----- 331 (953)
|+++.. +..+|++++. +|....+...
T Consensus 697 LyVad~------------------------------------------------~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 697 VYIAMA------------------------------------------------GQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEEEEC------------------------------------------------CCCeEEEEECCCCeEEEEecCCcccc
Confidence 665510 2345666665 5443322110
Q ss_pred -----------CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCC-c-ccC-Cc-----
Q 002209 332 -----------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL-A-EDI-PI----- 392 (953)
Q Consensus 332 -----------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~-~-~~~-p~----- 392 (953)
.....++++|||++|+++... ...|++||++++..+.+..... . ... ..
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSE------------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECC------------CCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 234568899999988776522 3489999998655443322100 0 000 00
Q ss_pred -cccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc--------------cc
Q 002209 393 -AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--------------LR 457 (953)
Q Consensus 393 -~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~--------------~~ 457 (953)
........+..+++++||+ +|.++ ...+.|.++|. +++....+.... ..
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~--LYVAD-----------s~N~rIrviD~---~tg~v~tiaG~G~~G~~dG~~~~a~l~~ 860 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQ--IYVAD-----------SYNHKIKKLDP---ATKRVTTLAGTGKAGFKDGKALKAQLSE 860 (1057)
T ss_pred chhhhhccCCceeeEeCCCc--EEEEE-----------CCCCEEEEEEC---CCCeEEEEeccCCcCCCCCcccccccCC
Confidence 0001112346789999996 45533 23457888884 444443332110 12
Q ss_pred cCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 458 ~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
..++++++||+ |+++ +.. +.+|.++++.++
T Consensus 861 P~GIavd~dG~-lyVa-Dt~--Nn~Irvid~~~~ 890 (1057)
T PLN02919 861 PAGLALGENGR-LFVA-DTN--NSLIRYLDLNKG 890 (1057)
T ss_pred ceEEEEeCCCC-EEEE-ECC--CCEEEEEECCCC
Confidence 34579999997 4433 332 237888888875
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00036 Score=70.09 Aligned_cols=247 Identities=13% Similarity=0.077 Sum_probs=126.8
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+.+++|++..+|.... +....+ ...+....||-||..++. .. -..++-++|+.+|+..++..+...
T Consensus 50 ~tVR~wevq~~g~~~~-ka~~~~--~~PvL~v~WsddgskVf~-g~--------~Dk~~k~wDL~S~Q~~~v~~Hd~p-- 115 (347)
T KOG0647|consen 50 GTVRIWEVQNSGQLVP-KAQQSH--DGPVLDVCWSDDGSKVFS-GG--------CDKQAKLWDLASGQVSQVAAHDAP-- 115 (347)
T ss_pred CceEEEEEecCCcccc-hhhhcc--CCCeEEEEEccCCceEEe-ec--------cCCceEEEEccCCCeeeeeecccc--
Confidence 3678999976554332 222222 246888999999965544 32 356778889999999888765553
Q ss_pred cccccceEEecCCe--EEEEEecCCCCCC--CCCCCCCC-----CCceeecCCCccccchhhhhhcCCcchhhhhhhhcc
Q 002209 243 NAIFDNFVWVNNST--LLVCTIPLLRGDP--PKKPLVPL-----GPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYAT 313 (953)
Q Consensus 243 ~~~~~~~~wspDg~--~l~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 313 (953)
+..+.|-+... .|+..+=++.... .+. ..|. ..+++..+- . .+-...-...
T Consensus 116 ---vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~-~~pv~t~~LPeRvYa~Dv---------------~-~pm~vVata~ 175 (347)
T KOG0647|consen 116 ---VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS-SNPVATLQLPERVYAADV---------------L-YPMAVVATAE 175 (347)
T ss_pred ---eeEEEEecCCCcceeEecccccceeecccCC-CCeeeeeeccceeeehhc---------------c-CceeEEEecC
Confidence 77899986665 3443221111110 000 0000 001111110 0 0000000144
Q ss_pred ceEEEEEc-CC--ceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-Eec--cCC
Q 002209 314 TQLVLVSL-DG--TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELC--DLP 385 (953)
Q Consensus 314 ~~l~~~~~-~g--~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~--~~~ 385 (953)
..|.+|+| ++ +.+++..+ -.++.++.-+|.+.-|..+..+ .+.+..++....+ ..+ -+.
T Consensus 176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG-------------rv~iq~id~~~~~~nFtFkCHR 242 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG-------------RVAIQYIDDPNPKDNFTFKCHR 242 (347)
T ss_pred CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc-------------eEEEEecCCCCccCceeEEEec
Confidence 67888888 55 44455444 4566777777776666665332 3444444321000 000 000
Q ss_pred CcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe--ecccccCCeee
Q 002209 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISW 463 (953)
Q Consensus 386 ~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~--~~~~~~~~~~~ 463 (953)
... + .+..-..+.+++|.|.-..++-. +.++..-.||. + ...+..+ .....+..-.|
T Consensus 243 ~~~--~--~~~~VYaVNsi~FhP~hgtlvTa-------------GsDGtf~FWDk---d-ar~kLk~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 243 STN--S--VNDDVYAVNSIAFHPVHGTLVTA-------------GSDGTFSFWDK---D-ARTKLKTSETHPQPITCCSF 301 (347)
T ss_pred cCC--C--CCCceEEecceEeecccceEEEe-------------cCCceEEEecc---h-hhhhhhccCcCCCccceeEe
Confidence 000 0 00111234568888865555444 45556777773 2 2222222 33555667789
Q ss_pred ccCCceEEEEEecc
Q 002209 464 CDDSLALVYESWYK 477 (953)
Q Consensus 464 SpDg~~l~~~~~~~ 477 (953)
..+|..++|+...+
T Consensus 302 n~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 302 NRNGSIFAYALGYD 315 (347)
T ss_pred cCCCCEEEEEeecc
Confidence 99999999987544
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00053 Score=73.31 Aligned_cols=221 Identities=14% Similarity=0.114 Sum_probs=134.4
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....|-.||+.+|- ++..+.+-+.|..+..+.+....... .+....|+|++..++.+..+.
T Consensus 70 ~v~s~~fR~DG~Llaa---------GD~sG~V~vfD~k~r~iLR~~~ah~a----pv~~~~f~~~d~t~l~s~sDd---- 132 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAA---------GDESGHVKVFDMKSRVILRQLYAHQA----PVHVTKFSPQDNTMLVSGSDD---- 132 (487)
T ss_pred ceeEEEeecCCeEEEc---------cCCcCcEEEeccccHHHHHHHhhccC----ceeEEEecccCCeEEEecCCC----
Confidence 5788888899998886 55667777788555333333332222 266788998887777552110
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeCCC-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDG~~l 346 (953)
. .+-.+|+ ++.++ .+... +.+...+|+|-..+|
T Consensus 133 ------------------------------------------~--v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hi 168 (487)
T KOG0310|consen 133 ------------------------------------------K--VVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHI 168 (487)
T ss_pred ------------------------------------------c--eEEEEEcCCcEEEEEecCCcceeEeeccccCCCeE
Confidence 1 1112344 33332 33444 788999999999999
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCc--eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~--~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
+++. .+.+.|.+||+... ....+... .| +.++-+-|.|..|+-.
T Consensus 169 vvtG------------sYDg~vrl~DtR~~~~~v~elnhg-----~p---------Ve~vl~lpsgs~iasA-------- 214 (487)
T KOG0310|consen 169 VVTG------------SYDGKVRLWDTRSLTSRVVELNHG-----CP---------VESVLALPSGSLIASA-------- 214 (487)
T ss_pred EEec------------CCCceEEEEEeccCCceeEEecCC-----Cc---------eeeEEEcCCCCEEEEc--------
Confidence 8885 34669999999743 33333321 12 2456777888766654
Q ss_pred cccccccCCeEEEEecCCCCCCCce-EEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEee--cC
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPE-ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF--DR 501 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~-~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~--~~ 501 (953)
+.+.+-+||+ .+|++.. ...++.-.+.++.+..|+.+|+.++-+. ++-+++..+ -+.+. .-
T Consensus 215 ------gGn~vkVWDl--~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~----~VKVfd~t~----~Kvv~s~~~ 278 (487)
T KOG0310|consen 215 ------GGNSVKVWDL--TTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR----HVKVFDTTN----YKVVHSWKY 278 (487)
T ss_pred ------CCCeEEEEEe--cCCceehhhhhcccceEEEEEeecCCceEeeccccc----ceEEEEccc----eEEEEeeec
Confidence 3457889997 3354322 2234566678889999999988776443 344555333 22222 11
Q ss_pred CCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 502 SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 502 ~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
+.. +.+ +..|||+..++..-
T Consensus 279 ~~p-vLs------iavs~dd~t~viGm 298 (487)
T KOG0310|consen 279 PGP-VLS------IAVSPDDQTVVIGM 298 (487)
T ss_pred ccc-eee------EEecCCCceEEEec
Confidence 111 111 67899999988775
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00031 Score=67.93 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=108.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..+.|.-||++.+....+ ..|.+|+... |.. -+...+ +|.
T Consensus 19 aV~avryN~dGnY~ltcGsd---------------------------------rtvrLWNp~r-g~l--iktYsg--hG~ 60 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSD---------------------------------RTVRLWNPLR-GAL--IKTYSG--HGH 60 (307)
T ss_pred ceEEEEEccCCCEEEEcCCC---------------------------------ceEEeecccc-cce--eeeecC--CCc
Confidence 46678899999998776654 2578888632 211 112222 344
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....-|.|...++- ..+...+++||+++|+..+-....... +..+.|..+...++...-+...
T Consensus 61 EVlD~~~s~Dnskf~s---------~GgDk~v~vwDV~TGkv~Rr~rgH~aq----VNtV~fNeesSVv~SgsfD~s~-- 125 (307)
T KOG0316|consen 61 EVLDAALSSDNSKFAS---------CGGDKAVQVWDVNTGKVDRRFRGHLAQ----VNTVRFNEESSVVASGSFDSSV-- 125 (307)
T ss_pred eeeecccccccccccc---------CCCCceEEEEEcccCeeeeecccccce----eeEEEecCcceEEEecccccee--
Confidence 7888888889988876 446788999999999875544444333 6778887777766654222111
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhh---hcCCc--chhhhhhhhccceEEEEEc-CCceeEeCCCCcccccccCCCC
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQD---LLKDE--YDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDE 343 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG 343 (953)
+.|+-......+.....+ .+..- .+-.+..-...+.+..+|+ .|....=.-+..++++.||+||
T Consensus 126 ----------r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~ 195 (307)
T KOG0316|consen 126 ----------RLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDG 195 (307)
T ss_pred ----------EEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCC
Confidence 112211111111111000 00000 0000000012244556666 5543322222567889999999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceE
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~ 378 (953)
..++..+.+. .+.+.|.++++.
T Consensus 196 nc~La~~l~s-------------tlrLlDk~tGkl 217 (307)
T KOG0316|consen 196 NCSLASSLDS-------------TLRLLDKETGKL 217 (307)
T ss_pred CEEEEeeccc-------------eeeecccchhHH
Confidence 9999888554 888888886653
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0047 Score=65.83 Aligned_cols=145 Identities=13% Similarity=0.060 Sum_probs=80.3
Q ss_pred cceEEEEEc-CCceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccC
Q 002209 313 TTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDI 390 (953)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~ 390 (953)
.+.|++++. +|+.+.+..+..+.+...--++..|+... + .+++++.+.+.. +.++..... .
T Consensus 46 ~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~-~--------------g~~~~~~~~~~~~t~~~~~~~~--~ 108 (307)
T COG3386 46 GGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE-H--------------GVRLLDPDTGGKITLLAEPEDG--L 108 (307)
T ss_pred CCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc-c--------------ccEEEeccCCceeEEeccccCC--C
Confidence 367889998 78777777664444443333343444332 2 577777764444 444332211 1
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCC-CcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCce
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG-DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~ 469 (953)
+. .........|||. ++|. ..... ...........||.++. .++..+.+...-...++++|||||+.
T Consensus 109 ~~------~r~ND~~v~pdG~-~wfg--t~~~~~~~~~~~~~~G~lyr~~p---~g~~~~l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 109 PL------NRPNDGVVDPDGR-IWFG--DMGYFDLGKSEERPTGSLYRVDP---DGGVVRLLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred Cc------CCCCceeEcCCCC-EEEe--CCCccccCccccCCcceEEEEcC---CCCEEEeecCcEEecCceEECCCCCE
Confidence 11 2233567788885 3333 11100 00011122347888873 45555555554556688999999999
Q ss_pred EEEEEecccCceEEEEEcCC
Q 002209 470 LVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~ 489 (953)
++++.... .+||.++.+
T Consensus 177 ly~aDT~~---~~i~r~~~d 193 (307)
T COG3386 177 LYVADTPA---NRIHRYDLD 193 (307)
T ss_pred EEEEeCCC---CeEEEEecC
Confidence 88875433 378888776
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00015 Score=74.57 Aligned_cols=100 Identities=12% Similarity=0.079 Sum_probs=67.4
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecC-CCCC
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF-PDGA 189 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~-~~~~ 189 (953)
+..++|+.-|+.||..+.+ -.+.+||... ..+.+..+ ....
T Consensus 153 v~di~~~a~Gk~l~tcSsD---------------------------------l~~~LWd~~~-----~~~c~ks~~gh~h 194 (406)
T KOG0295|consen 153 VFDISFDASGKYLATCSSD---------------------------------LSAKLWDFDT-----FFRCIKSLIGHEH 194 (406)
T ss_pred eeEEEEecCccEEEecCCc---------------------------------cchhheeHHH-----HHHHHHHhcCccc
Confidence 6667777788777777664 1256777721 12222212 1223
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
.++.+.+-|-|.+|+-.++ +..|..++.++|........+... +..+.-.-||++++..
T Consensus 195 ~vS~V~f~P~gd~ilS~sr---------D~tik~We~~tg~cv~t~~~h~ew----vr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSR---------DNTIKAWECDTGYCVKTFPGHSEW----VRMVRVNQDGTIIASC 253 (406)
T ss_pred ceeeEEEEecCCeeeeccc---------ccceeEEecccceeEEeccCchHh----EEEEEecCCeeEEEec
Confidence 7899999999999998664 557888898898776544433332 7788888999988855
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00022 Score=74.42 Aligned_cols=251 Identities=13% Similarity=0.074 Sum_probs=139.4
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....|-++...|+... ....|-+|++.+++...+....+ .++.+....+.++++.+...+
T Consensus 177 ev~~v~~l~~sdtlatgg---------~Dr~Ik~W~v~~~k~~~~~tLaG--s~g~it~~d~d~~~~~~iAas------- 238 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLATGG---------SDRIIKLWNVLGEKSELISTLAG--SLGNITSIDFDSDNKHVIAAS------- 238 (459)
T ss_pred ccceeEEccCcchhhhcc---------hhhhhhhhhcccchhhhhhhhhc--cCCCcceeeecCCCceEEeec-------
Confidence 577889998877777632 23445555555554322211111 223377888999998777541
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccCCCCcEEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILI 348 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDG~~l~~ 348 (953)
.| +...||.+|-......|+.. +.++...|.-....++-
T Consensus 239 ---------------------------------~d-------~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVs 278 (459)
T KOG0288|consen 239 ---------------------------------ND-------KNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVS 278 (459)
T ss_pred ---------------------------------CC-------Cceeeeeccchhhhhhhcccccceeeehhhccccceee
Confidence 11 22345544422234445555 67777778776665444
Q ss_pred EEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
.+.+ ..|.+||+.... .+.+..... ...+.-++ ..++ .+
T Consensus 279 gs~D-------------RtiK~WDl~k~~C~kt~l~~S~--------------cnDI~~~~----~~~~----Sg----- 318 (459)
T KOG0288|consen 279 GSAD-------------RTIKLWDLQKAYCSKTVLPGSQ--------------CNDIVCSI----SDVI----SG----- 318 (459)
T ss_pred cccc-------------chhhhhhhhhhheecccccccc--------------ccceEecc----eeee----ec-----
Confidence 4433 388889987432 222111110 01122220 0111 00
Q ss_pred ccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCcccc
Q 002209 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVY 507 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 507 (953)
-....|..||. .+...+.-....+.+.++..|+||..|...+.++ .+-++|+.+. +.+..+....- ..
T Consensus 319 --H~DkkvRfwD~---Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd----tl~viDlRt~--eI~~~~sA~g~-k~ 386 (459)
T KOG0288|consen 319 --HFDKKVRFWDI---RSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD----TLKVIDLRTK--EIRQTFSAEGF-KC 386 (459)
T ss_pred --ccccceEEEec---cCCceeeEeecCcceeeEeeccCCeEEeeecCCC----ceeeeecccc--cEEEEeecccc-cc
Confidence 11234777774 3344444444556788999999999988775444 4667777663 33333322211 01
Q ss_pred CCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCc
Q 002209 508 SDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (953)
Q Consensus 508 ~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~ 572 (953)
+. ..-.+.|||||++++..+.++ .+|+|++.+++.+.+.....
T Consensus 387 as-DwtrvvfSpd~~YvaAGS~dg---------------------sv~iW~v~tgKlE~~l~~s~ 429 (459)
T KOG0288|consen 387 AS-DWTRVVFSPDGSYVAAGSADG---------------------SVYIWSVFTGKLEKVLSLST 429 (459)
T ss_pred cc-ccceeEECCCCceeeeccCCC---------------------cEEEEEccCceEEEEeccCC
Confidence 11 111278999999999887533 39999999999988766554
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0043 Score=66.69 Aligned_cols=59 Identities=10% Similarity=0.211 Sum_probs=40.2
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceee---cccCCCccccccccceEEecCCeEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP---LFQSPDIYLNAIFDNFVWVNNSTLLV 259 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~~~~wspDg~~l~ 259 (953)
+.+....|.|-+..|..+- +..+||.++++++...+ +....+. ..+-.+.|.+||..|-
T Consensus 201 e~v~~a~FHPtd~nliit~---------Gk~H~~Fw~~~~~~l~k~~~~fek~ek---k~Vl~v~F~engdviT 262 (626)
T KOG2106|consen 201 EVVFLATFHPTDPNLIITC---------GKGHLYFWTLRGGSLVKRQGIFEKREK---KFVLCVTFLENGDVIT 262 (626)
T ss_pred ceEEEEEeccCCCcEEEEe---------CCceEEEEEccCCceEEEeeccccccc---eEEEEEEEcCCCCEEe
Confidence 3577889999888877755 47799999999876432 3222221 2256778888887654
|
|
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.7e-05 Score=75.80 Aligned_cols=92 Identities=24% Similarity=0.190 Sum_probs=58.1
Q ss_pred EEEEEeChHHHHHHHHHHhC--------CCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCc
Q 002209 761 IAVGGHSYGAFMTANLLAHA--------PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKP 832 (953)
Q Consensus 761 i~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P 832 (953)
.+|+|+|.||.+|+.++.+. ...||.+|+++|+...... +.......+|++|
T Consensus 104 dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~--------------------~~~~~~~~~i~iP 163 (212)
T PF03959_consen 104 DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD--------------------YQELYDEPKISIP 163 (212)
T ss_dssp SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE---------------------GTTTT--TT---E
T ss_pred EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh--------------------hhhhhccccCCCC
Confidence 49999999999999888632 1348999999886321000 0011123457899
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 002209 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (953)
Q Consensus 833 ~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (953)
+|-++|.+|..++ .+.++++++..... .+++..++ ||.+.
T Consensus 164 tlHv~G~~D~~~~--~~~s~~L~~~~~~~---~~v~~h~g-GH~vP 203 (212)
T PF03959_consen 164 TLHVIGENDPVVP--PERSEALAEMFDPD---ARVIEHDG-GHHVP 203 (212)
T ss_dssp EEEEEETT-SSS---HHHHHHHHHHHHHH---EEEEEESS-SSS--
T ss_pred eEEEEeCCCCCcc--hHHHHHHHHhccCC---cEEEEECC-CCcCc
Confidence 9999999999998 88999999998874 57778887 89874
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00042 Score=70.22 Aligned_cols=105 Identities=10% Similarity=0.193 Sum_probs=64.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCC-CC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DG 188 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~-~~ 188 (953)
++..-+|++|++.+|..... +++.|+.... .. .-..+..+. +.
T Consensus 12 pitchAwn~drt~iAv~~~~---------------------------------~evhiy~~~~-~~--~w~~~htls~Hd 55 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNN---------------------------------HEVHIYSMLG-AD--LWEPAHTLSEHD 55 (361)
T ss_pred ceeeeeecCCCceEEeccCC---------------------------------ceEEEEEecC-CC--CceeceehhhhC
Confidence 45667899999999987763 2556665522 11 012222122 23
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEEC-CCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV-DTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~-~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
..++.+.|+|.+.+|..... ..+-|++.. ++|+-.+..- -.++|.....+.|+|.+..+++.
T Consensus 56 ~~vtgvdWap~snrIvtcs~---------drnayVw~~~~~~~Wkptlv--LlRiNrAAt~V~WsP~enkFAVg 118 (361)
T KOG1523|consen 56 KIVTGVDWAPKSNRIVTCSH---------DRNAYVWTQPSGGTWKPTLV--LLRINRAATCVKWSPKENKFAVG 118 (361)
T ss_pred cceeEEeecCCCCceeEccC---------CCCccccccCCCCeecccee--EEEeccceeeEeecCcCceEEec
Confidence 37788999999999998663 334455555 5555332211 11244446789999999998876
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.9e-05 Score=79.94 Aligned_cols=167 Identities=16% Similarity=0.207 Sum_probs=101.0
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
+.+..-+|+|||.-|+... ++..|-+|.-.|.-.-.+...... +..++|.|+...++|.
T Consensus 105 ~A~~~gRW~~dGtgLlt~G---------EDG~iKiWSrsGMLRStl~Q~~~~-----v~c~~W~p~S~~vl~c------- 163 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAG---------EDGVIKIWSRSGMLRSTVVQNEES-----IRCARWAPNSNSIVFC------- 163 (737)
T ss_pred hhhhhcccCCCCceeeeec---------CCceEEEEeccchHHHHHhhcCce-----eEEEEECCCCCceEEe-------
Confidence 4677889999999998854 344555666444322233333332 7789999999988887
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CCce-eEeCCCCcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTV-KEIGPPAVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g~~-~~l~~~~~~~~~~~SpDG~~ 345 (953)
..+++++-.+ +-++ +.-...+-+-...|+|....
T Consensus 164 -------------------------------------------~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~l 200 (737)
T KOG1524|consen 164 -------------------------------------------QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNI 200 (737)
T ss_pred -------------------------------------------cCCeEEEeecccccceeEEeccCcEEEEeecCccccc
Confidence 3356666666 3232 22233366778899999987
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
|+....+ ....+||.-|...- +.. .++.| +.+++|.|| +-.+.|
T Consensus 201 I~sgGED-------------~kfKvWD~~G~~Lf---~S~-~~ey~---------ITSva~npd-~~~~v~--------- 244 (737)
T KOG1524|consen 201 IASGGED-------------FRFKIWDAQGANLF---TSA-AEEYA---------ITSVAFNPE-KDYLLW--------- 244 (737)
T ss_pred eeecCCc-------------eeEEeecccCcccc---cCC-hhccc---------eeeeeeccc-cceeee---------
Confidence 7755432 25667887764322 211 11222 368999999 433333
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeec-ccccCCeeeccCCceEEEEE
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLALVYES 474 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~-~~~~~~~~~SpDg~~l~~~~ 474 (953)
.++. -++.+. .+.+..++||+||..++...
T Consensus 245 -----------S~nt--------~R~~~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 245 -----------SYNT--------ARFSSPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred -----------eeee--------eeecCCCccceEEEEEcCCCceeeccc
Confidence 1110 112222 34566789999999988764
|
|
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.8e-05 Score=64.32 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=55.6
Q ss_pred CcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCC
Q 002209 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGD 728 (953)
Q Consensus 649 g~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~ 728 (953)
|.+|.+..|.|+. . +..+|+++||-. .........+..|+++||.|++ +|.+|+|.
T Consensus 1 G~~L~~~~w~p~~-----~-~k~~v~i~HG~~---------------eh~~ry~~~a~~L~~~G~~V~~---~D~rGhG~ 56 (79)
T PF12146_consen 1 GTKLFYRRWKPEN-----P-PKAVVVIVHGFG---------------EHSGRYAHLAEFLAEQGYAVFA---YDHRGHGR 56 (79)
T ss_pred CcEEEEEEecCCC-----C-CCEEEEEeCCcH---------------HHHHHHHHHHHHHHhCCCEEEE---ECCCcCCC
Confidence 6789999999975 2 478999999941 2333345677889999999999 67789999
Q ss_pred hhhhh---hhHHHHHHHHHHHH
Q 002209 729 EEAND---RFVEQLVACAEAAV 747 (953)
Q Consensus 729 ~~~~~---~~~~~~~~D~~~~~ 747 (953)
|.+.. ..++..++|+...+
T Consensus 57 S~g~rg~~~~~~~~v~D~~~~~ 78 (79)
T PF12146_consen 57 SEGKRGHIDSFDDYVDDLHQFI 78 (79)
T ss_pred CCCcccccCCHHHHHHHHHHHh
Confidence 86532 34677788877665
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.017 Score=71.29 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=69.7
Q ss_pred cccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002209 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (953)
Q Consensus 333 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~ 412 (953)
.-..++|-.||+++|+++..... .....+.+|+-+|. ...... +.. +-...++|.|.|..
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~-------~~~R~iRVy~ReG~-L~stSE-~v~-----------gLe~~l~WrPsG~l 270 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPET-------GSRRVIRVYSREGE-LQSTSE-PVD-----------GLEGALSWRPSGNL 270 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCC-------CceeEEEEECCCce-EEeccc-cCC-----------CccCCccCCCCCCE
Confidence 44568899999999999853211 12347888988853 221111 110 11135899999997
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe----ecccccCCeeeccCCceEEEEEecccCceEEEEE
Q 002209 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH----KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (953)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~----~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~ 486 (953)
|+-.-. . ..+..|..+.- +|-+...++ ..+..+..+.|++|+..|+....+. .+||..
T Consensus 271 IA~~q~-~---------~~~~~VvFfEr---NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~---vqLWt~ 332 (928)
T PF04762_consen 271 IASSQR-L---------PDRHDVVFFER---NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR---VQLWTR 332 (928)
T ss_pred EEEEEE-c---------CCCcEEEEEec---CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC---ceEEEe
Confidence 776621 1 22345666663 443333322 2345567899999999988755322 356654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00051 Score=75.72 Aligned_cols=58 Identities=17% Similarity=0.333 Sum_probs=44.1
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCC
Q 002209 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (953)
Q Consensus 109 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~ 188 (953)
.-+..++|-|||..|+....+ .++|+|.+ +| +.-..|.++.
T Consensus 13 hci~d~afkPDGsqL~lAAg~----------------------------------rlliyD~n-dG--~llqtLKgHK-- 53 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGS----------------------------------RLLVYDTS-DG--TLLQPLKGHK-- 53 (1081)
T ss_pred cchheeEECCCCceEEEecCC----------------------------------EEEEEeCC-Cc--cccccccccc--
Confidence 357789999999999988774 67999985 45 3334455443
Q ss_pred CcccceEeccCCCeEEE
Q 002209 189 AKLNFVTWSQDGKHLAF 205 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf 205 (953)
..+..++||-||++.|.
T Consensus 54 DtVycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 54 DTVYCVAYAKDGKRFAS 70 (1081)
T ss_pred ceEEEEEEccCCceecc
Confidence 36889999999998775
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0076 Score=64.24 Aligned_cols=205 Identities=18% Similarity=0.153 Sum_probs=108.9
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
...|.|.|+++.|+|+-- ....|+.+++++|+.+.... +.. +.....-.++..|+...
T Consensus 27 gEgP~w~~~~~~L~w~DI--------~~~~i~r~~~~~g~~~~~~~-p~~-----~~~~~~~d~~g~Lv~~~-------- 84 (307)
T COG3386 27 GEGPVWDPDRGALLWVDI--------LGGRIHRLDPETGKKRVFPS-PGG-----FSSGALIDAGGRLIACE-------- 84 (307)
T ss_pred ccCccCcCCCCEEEEEeC--------CCCeEEEecCCcCceEEEEC-CCC-----cccceeecCCCeEEEEc--------
Confidence 345899999999988532 36799999998776654433 332 33444444444444330
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC------CcccccccCCC
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP------AVYTSLDPSPD 342 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~------~~~~~~~~SpD 342 (953)
..+++++. +|.. +.+... .........||
T Consensus 85 -------------------------------------------~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd 121 (307)
T COG3386 85 -------------------------------------------HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD 121 (307)
T ss_pred -------------------------------------------cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC
Confidence 12334443 3333 333321 23345678899
Q ss_pred CcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 343 G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
|+ +.|..... .+......+..+.+|.++.+++..+.+...- ....+++|||||+.+++. +
T Consensus 122 G~-~wfgt~~~-~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~-------------~~~NGla~SpDg~tly~a-D---- 181 (307)
T COG3386 122 GR-IWFGDMGY-FDLGKSEERPTGSLYRVDPDGGVVRLLDDDL-------------TIPNGLAFSPDGKTLYVA-D---- 181 (307)
T ss_pred CC-EEEeCCCc-cccCccccCCcceEEEEcCCCCEEEeecCcE-------------EecCceEECCCCCEEEEE-e----
Confidence 87 44554331 0000011122347888887777777666521 122479999999966655 2
Q ss_pred CCcccccccCCeEEEEecCCCCC---CCceEE--eecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQG---EGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g---~~~~~l--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
+....++.+++++.++ +....+ ....+...++....||..-+...+.. ..|-++++++
T Consensus 182 -------T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g---~~v~~~~pdG 244 (307)
T COG3386 182 -------TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG---GRVVRFNPDG 244 (307)
T ss_pred -------CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC---ceEEEECCCC
Confidence 3356788888633222 111111 12234445556666666432222221 2677777774
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00029 Score=68.63 Aligned_cols=178 Identities=13% Similarity=0.119 Sum_probs=110.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
-+..++||-|.++|+..... .-|+|+|++.. ..+++.+.+.+ .
T Consensus 102 ivk~~af~~ds~~lltgg~e---------------------------------kllrvfdln~p--~App~E~~ght--g 144 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQE---------------------------------KLLRVFDLNRP--KAPPKEISGHT--G 144 (334)
T ss_pred eeeeEEecccchhhhccchH---------------------------------HHhhhhhccCC--CCCchhhcCCC--C
Confidence 46678888888888766553 12456666321 13456666655 3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..+.|--..+.|+-.. ....+.+||..+|+..+-...+.. +.++..++||++|..+
T Consensus 145 ~Ir~v~wc~eD~~iLSSa---------dd~tVRLWD~rTgt~v~sL~~~s~-----VtSlEvs~dG~ilTia-------- 202 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSA---------DDKTVRLWDHRTGTEVQSLEFNSP-----VTSLEVSQDGRILTIA-------- 202 (334)
T ss_pred cceeEEEeccCceEEeec---------cCCceEEEEeccCcEEEEEecCCC-----CcceeeccCCCEEEEe--------
Confidence 588899988788888753 245667777778876554333332 7799999999988866
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CCceeEeCCCCcccccccCCCCcEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPPAVYTSLDPSPDEKYIL 347 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g~~~~l~~~~~~~~~~~SpDG~~l~ 347 (953)
..+.+-.+|. =+.++..-.+..+.+.+++|+-..++
T Consensus 203 ------------------------------------------~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 203 ------------------------------------------YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV 240 (334)
T ss_pred ------------------------------------------cCceeEEeccccccceeeccCccccccccccCCCceEE
Confidence 1122333343 23444444446788899999885444
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~ 412 (953)
.... ...++.+|-++++....... +..+-+-.+.|||||..
T Consensus 241 aGge-------------d~~~~kfDy~TgeEi~~~nk-----------gh~gpVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 241 AGGE-------------DFKVYKFDYNTGEEIGSYNK-----------GHFGPVHCVRFSPDGEL 281 (334)
T ss_pred ecCc-------------ceEEEEEeccCCceeeeccc-----------CCCCceEEEEECCCCce
Confidence 3321 23677788887665544211 11122356899999973
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0013 Score=69.20 Aligned_cols=228 Identities=10% Similarity=0.066 Sum_probs=128.2
Q ss_pred eeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEE
Q 002209 143 KLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVW 222 (953)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~ 222 (953)
+...+.+.++.......+.+..|+||.+.... ....+ .+....+....-.|.|++|+..++ ....-
T Consensus 263 ki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---~~~~~--~~h~~~V~~ls~h~tgeYllsAs~---------d~~w~ 328 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITASADEIIRVWSVPLSS---EPTSS--RPHEEPVTGLSLHPTGEYLLSASN---------DGTWA 328 (506)
T ss_pred EEEEEEeccchhheeecCCcceEEeecccccc---Ccccc--ccccccceeeeeccCCcEEEEecC---------CceEE
Confidence 34445555554444444444578999885421 11111 233456788888889998888653 22333
Q ss_pred EEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCc
Q 002209 223 VADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDE 302 (953)
Q Consensus 223 ~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (953)
..|..+|........+... -.+.+.++.|||-++...+
T Consensus 329 Fsd~~~g~~lt~vs~~~s~--v~~ts~~fHpDgLifgtgt---------------------------------------- 366 (506)
T KOG0289|consen 329 FSDISSGSQLTVVSDETSD--VEYTSAAFHPDGLIFGTGT---------------------------------------- 366 (506)
T ss_pred EEEccCCcEEEEEeecccc--ceeEEeeEcCCceEEeccC----------------------------------------
Confidence 3444455432222211110 0145888999997665331
Q ss_pred chhhhhhhhccceEEEEEc-CC-ceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-E
Q 002209 303 YDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-V 378 (953)
Q Consensus 303 ~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~ 378 (953)
..+.|-++|+ ++ ...++... +.+..++||-+|-|||...++. .|.+||+..-. .
T Consensus 367 ---------~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~-------------~V~lwDLRKl~n~ 424 (506)
T KOG0289|consen 367 ---------PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG-------------SVKLWDLRKLKNF 424 (506)
T ss_pred ---------CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC-------------eEEEEEehhhccc
Confidence 2245667777 54 44555555 8889999999999999998554 69999997422 2
Q ss_pred EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE---Eeecc
Q 002209 379 RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI---LHKLD 455 (953)
Q Consensus 379 ~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~---l~~~~ 455 (953)
+.+.. .+. .++.++.|.+-|+.++.. +..-.||.++- ...+-+. +....
T Consensus 425 kt~~l---~~~---------~~v~s~~fD~SGt~L~~~-------------g~~l~Vy~~~k---~~k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 425 KTIQL---DEK---------KEVNSLSFDQSGTYLGIA-------------GSDLQVYICKK---KTKSWTEIKELADHS 476 (506)
T ss_pred ceeec---ccc---------ccceeEEEcCCCCeEEee-------------cceeEEEEEec---ccccceeeehhhhcc
Confidence 22222 111 134567888888876655 22335666651 2222222 22233
Q ss_pred cccCCeeeccCCceEEEEEec
Q 002209 456 LRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 456 ~~~~~~~~SpDg~~l~~~~~~ 476 (953)
+....+.|...-++++..+.+
T Consensus 477 g~st~v~Fg~~aq~l~s~smd 497 (506)
T KOG0289|consen 477 GLSTGVRFGEHAQYLASTSMD 497 (506)
T ss_pred cccceeeecccceEEeeccch
Confidence 444567777777776665544
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0011 Score=64.76 Aligned_cols=231 Identities=14% Similarity=0.190 Sum_probs=121.1
Q ss_pred ceEEEEccCCCCCCceeeeecCCCC-CcccceEecc--CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDG-AKLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI 240 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~-~~~~~~~wSP--DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 240 (953)
.|.|..+...+ +...+..|+.. +.+-.+.|.- -|..||-.+ ....+.++.-++|.-.++.....
T Consensus 34 tVkIf~v~~n~---~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs---------YDgkVIiWke~~g~w~k~~e~~~- 100 (299)
T KOG1332|consen 34 TVKIFEVRNNG---QSKLLAELTGHSGPVWKVAWAHPKFGTILASCS---------YDGKVIIWKEENGRWTKAYEHAA- 100 (299)
T ss_pred cEEEEEEcCCC---CceeeeEecCCCCCeeEEeecccccCcEeeEee---------cCceEEEEecCCCchhhhhhhhh-
Confidence 45677775433 22333333322 3667777764 688888765 35566677766775444433222
Q ss_pred cccccccceEEecCCe--EEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEE
Q 002209 241 YLNAIFDNFVWVNNST--LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (953)
Q Consensus 241 ~~~~~~~~~~wspDg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 318 (953)
+.+.+.+++|.|.+- .|++.+. | +.-.|..
T Consensus 101 -h~~SVNsV~wapheygl~LacasS----------------------------------------D-------G~vsvl~ 132 (299)
T KOG1332|consen 101 -HSASVNSVAWAPHEYGLLLACASS----------------------------------------D-------GKVSVLT 132 (299)
T ss_pred -hcccceeecccccccceEEEEeeC----------------------------------------C-------CcEEEEE
Confidence 233477899998864 4444411 1 2223334
Q ss_pred EEcC-C-ceeEeCCC--CcccccccCCC---C-----------cEEEEEEecCCccccccCCCCCcceEEEeccCceEEE
Q 002209 319 VSLD-G-TVKEIGPP--AVYTSLDPSPD---E-----------KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE 380 (953)
Q Consensus 319 ~~~~-g-~~~~l~~~--~~~~~~~~SpD---G-----------~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~ 380 (953)
++-+ | ....+..- -++.+++|.|- | ++++... -.+.+.+|+.+.+..+.
T Consensus 133 ~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG-------------cDn~VkiW~~~~~~w~~ 199 (299)
T KOG1332|consen 133 YDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG-------------CDNLVKIWKFDSDSWKL 199 (299)
T ss_pred EcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC-------------CccceeeeecCCcchhh
Confidence 4443 3 22333222 57788899886 5 3333222 23367788777532111
Q ss_pred eccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC--ceEEeeccccc
Q 002209 381 LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG--PEILHKLDLRY 458 (953)
Q Consensus 381 l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~--~~~l~~~~~~~ 458 (953)
-.. +.++..-+|.++|.|.-..-.+.+ ...+..+.+++|..+ .++++ .+.|...+..+
T Consensus 200 e~~----------l~~H~dwVRDVAwaP~~gl~~s~i---------AS~SqDg~viIwt~~-~e~e~wk~tll~~f~~~~ 259 (299)
T KOG1332|consen 200 ERT----------LEGHKDWVRDVAWAPSVGLPKSTI---------ASCSQDGTVIIWTKD-EEYEPWKKTLLEEFPDVV 259 (299)
T ss_pred hhh----------hhhcchhhhhhhhccccCCCceee---------EEecCCCcEEEEEec-CccCcccccccccCCcce
Confidence 111 112335678999999753222211 111334455555431 12221 23344444456
Q ss_pred CCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 459 GGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 459 ~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
..++||.-|..|+.+..++ +..||.=+.++
T Consensus 260 w~vSWS~sGn~LaVs~GdN--kvtlwke~~~G 289 (299)
T KOG1332|consen 260 WRVSWSLSGNILAVSGGDN--KVTLWKENVDG 289 (299)
T ss_pred EEEEEeccccEEEEecCCc--EEEEEEeCCCC
Confidence 6799999999988875443 23677666554
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00012 Score=78.81 Aligned_cols=153 Identities=17% Similarity=0.140 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHH----cCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcc-cCCCCCC------CCcC-cc---
Q 002209 740 VACAEAAVEEVVR----RGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS-GAYNRTL------TPFG-FQ--- 804 (953)
Q Consensus 740 ~~D~~~~~~~l~~----~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~-~~~d~~~------~~~~-~~--- 804 (953)
+.-+..|++.+.+ ...++.++.+|.|.|==|..+..+|+.+ +|++|+|.+. .+.|... ..++ .+
T Consensus 149 tka~vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa~D-~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a 227 (367)
T PF10142_consen 149 TKAAVRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAAVD-PRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFA 227 (367)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhccC-cceeEEeeEEEccCCcHHHHHHHHHHhCCCCccc
Confidence 3444445544433 3445678999999999999999999866 6899888764 2333110 0011 00
Q ss_pred -----cccchhh----hhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCc
Q 002209 805 -----NEDRTLW----EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875 (953)
Q Consensus 805 -----~~~~~~~----~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H 875 (953)
.+.-... +-.+...-.+|+.+.++++.|-||+.|..|+... ++.+.-++..|+. ++.+..+|+++|
T Consensus 228 ~~dY~~~gi~~~l~tp~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~--pD~~~~y~d~L~G---~K~lr~vPN~~H 302 (367)
T PF10142_consen 228 FQDYYNEGITQQLDTPEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFV--PDSSNFYYDKLPG---EKYLRYVPNAGH 302 (367)
T ss_pred hhhhhHhCchhhcCCHHHHHHHHhcCHHHHHHhcCccEEEEecCCCceec--cCchHHHHhhCCC---CeeEEeCCCCCc
Confidence 0000000 0122334568999999999999999999999987 8999999999976 478999999999
Q ss_pred cCCCcccHHHHHHHHHHHHHHhccCCC
Q 002209 876 GYAARESIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 876 ~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (953)
.... ..+.+.+..|+...+...+
T Consensus 303 ~~~~----~~~~~~l~~f~~~~~~~~~ 325 (367)
T PF10142_consen 303 SLIG----SDVVQSLRAFYNRIQNGRP 325 (367)
T ss_pred ccch----HHHHHHHHHHHHHHHcCCC
Confidence 8854 6678889999998776543
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0023 Score=67.54 Aligned_cols=166 Identities=14% Similarity=0.108 Sum_probs=97.5
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..++.....|.|++++.++++. ..-..|+. +.....+... .. ...+.+.+|.|||
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~-------------~w~Fsd~~~g~~lt~vs~~-~s----------~v~~ts~~fHpDg 359 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDG-------------TWAFSDISSGSQLTVVSDE-TS----------DVEYTSAAFHPDG 359 (506)
T ss_pred ccceeeeeccCCcEEEEecCCc-------------eEEEEEccCCcEEEEEeec-cc----------cceeEEeeEcCCc
Confidence 6677888899999999888654 22233444 3333333331 11 1234578999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
++|.+- ...+.+-+||+ ..+.....+..+.+.+..++||.+|-+|+.+.+++. ..||.+.-..
T Consensus 360 --Lifgtg-----------t~d~~vkiwdl--ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~--V~lwDLRKl~ 422 (506)
T KOG0289|consen 360 --LIFGTG-----------TPDGVVKIWDL--KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS--VKLWDLRKLK 422 (506)
T ss_pred --eEEecc-----------CCCceEEEEEc--CCccccccCCCCCCceeEEEeccCceEEEEEecCCe--EEEEEehhhc
Confidence 445421 34567889997 333334445567778888999999999999887653 2555443221
Q ss_pred CCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
....+.-.....+.. +.|.+-|++|+....+ -++|.++-.++.++.+-
T Consensus 423 ---n~kt~~l~~~~~v~s------~~fD~SGt~L~~~g~~---------------------l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 423 ---NFKTIQLDEKKEVNS------LSFDQSGTYLGIAGSD---------------------LQVYICKKKTKSWTEIK 470 (506)
T ss_pred ---ccceeecccccccee------EEEcCCCCeEEeecce---------------------eEEEEEecccccceeee
Confidence 122222111111222 6778888887665321 24667776666665553
|
|
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00039 Score=76.25 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=52.9
Q ss_pred CCCC-CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCC-CcEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHHh
Q 002209 827 NKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHG--YAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 827 ~~i~-~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~fl~~~ 897 (953)
++|+ +|+|.+-|+.|.++| +.++..+.+.+...+ .+++....+++||. +........++-.+.+||.++
T Consensus 334 ~~I~~~pll~V~ge~D~I~p--~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 334 GAITRVALLTVEGENDDISG--LGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHCcccceEEEeccCCCcCC--HHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 5678 999999999999999 999998888764332 24556677788996 344555667888899998763
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0035 Score=60.12 Aligned_cols=139 Identities=6% Similarity=0.014 Sum_probs=78.9
Q ss_pred ccceEEEEEc-CCce-eEeCCC-Ccc-cccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCC
Q 002209 312 ATTQLVLVSL-DGTV-KEIGPP-AVY-TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPL 386 (953)
Q Consensus 312 ~~~~l~~~~~-~g~~-~~l~~~-~~~-~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~ 386 (953)
+.-.||+.|. .|+. ..+... +.+ .-+.| +|-.++..+. .+.|..||+. ...++.+.+.-.
T Consensus 161 gdc~iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~sgsq-------------dktirfwdlrv~~~v~~l~~~~~ 225 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQGFHALSGHTGHILALYSW--NGAMFASGSQ-------------DKTIRFWDLRVNSCVNTLDNDFH 225 (350)
T ss_pred CcceEEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEccCC-------------CceEEEEeeeccceeeeccCccc
Confidence 4467888888 6653 333333 222 22344 3544444332 3489999997 344444433111
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeecc
Q 002209 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCD 465 (953)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~Sp 465 (953)
.... ....+..++..|.|+.++-. .....-.++|+ .|+.. +....+..++..+.|||
T Consensus 226 ~~gl------essavaav~vdpsgrll~sg-------------~~dssc~lydi---rg~r~iq~f~phsadir~vrfsp 283 (350)
T KOG0641|consen 226 DGGL------ESSAVAAVAVDPSGRLLASG-------------HADSSCMLYDI---RGGRMIQRFHPHSADIRCVRFSP 283 (350)
T ss_pred CCCc------ccceeEEEEECCCcceeeec-------------cCCCceEEEEe---eCCceeeeeCCCccceeEEEeCC
Confidence 1000 00123457788888755443 22345677776 56554 34566677888999999
Q ss_pred CCceEEEEEecccCceEEEEEcCCCC
Q 002209 466 DSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
.-.+++..+.+. .|.+.|+++.
T Consensus 284 ~a~yllt~syd~----~ikltdlqgd 305 (350)
T KOG0641|consen 284 GAHYLLTCSYDM----KIKLTDLQGD 305 (350)
T ss_pred CceEEEEecccc----eEEEeecccc
Confidence 988887765543 5667777663
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0014 Score=72.96 Aligned_cols=163 Identities=13% Similarity=0.119 Sum_probs=100.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+...++||||.+||+..-. +..|+.+..++ ....+.+...+...
T Consensus 384 nIs~~aiSPdg~~Ia~st~~----------------------------------~~~iy~L~~~~-~vk~~~v~~~~~~~ 428 (691)
T KOG2048|consen 384 NISCAAISPDGNLIAISTVS----------------------------------RTKIYRLQPDP-NVKVINVDDVPLAL 428 (691)
T ss_pred ceeeeccCCCCCEEEEeecc----------------------------------ceEEEEeccCc-ceeEEEeccchhhh
Confidence 46678899999999998752 22333333222 11112221122111
Q ss_pred -cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 190 -KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 190 -~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
......|+=|+..+++.+. ...+|...++++.....+........-..+..+.-||||++|+...
T Consensus 429 ~~a~~i~ftid~~k~~~~s~--------~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~------ 494 (691)
T KOG2048|consen 429 LDASAISFTIDKNKLFLVSK--------NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS------ 494 (691)
T ss_pred ccceeeEEEecCceEEEEec--------ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe------
Confidence 4567788989988888652 2567788887776544332211110111266788999999999771
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC--CcccccccCC-CCc
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSP-DEK 344 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~Sp-DG~ 344 (953)
..++|+.+++ +++.+.+... ..++...++| +-.
T Consensus 495 -------------------------------------------t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~ 531 (691)
T KOG2048|consen 495 -------------------------------------------TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRN 531 (691)
T ss_pred -------------------------------------------ccceEEEEEcccceeecchhccCcceeeeeccccccC
Confidence 4468999999 7776666532 6677888885 555
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCce
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF 377 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~ 377 (953)
.|+....+ ++++-+|++..+
T Consensus 532 ~lvvats~-------------nQv~efdi~~~~ 551 (691)
T KOG2048|consen 532 RLVVATSN-------------NQVFEFDIEARN 551 (691)
T ss_pred cEEEEecC-------------CeEEEEecchhh
Confidence 66665533 378888885433
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0052 Score=63.88 Aligned_cols=274 Identities=14% Similarity=0.124 Sum_probs=151.1
Q ss_pred CCCchhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCC
Q 002209 96 RLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGK 175 (953)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~ 175 (953)
-.+|++...++....++++..+ +++|+..+.+ +.+.||+.. |
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYD---------------------------------g~~riWd~~--G- 134 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYD---------------------------------GTSRIWDLK--G- 134 (423)
T ss_pred cCCCCccccccchhhhhhhccc--CceEEEeecC---------------------------------CeeEEEecC--C-
Confidence 3567777888877789999888 8889888775 356899984 3
Q ss_pred CCceeeeecCCCCCcccceEe-ccCCCeEEEEEeeccccCCCCcceEEEEECCCCcee--ecccCCCccccccccceEEe
Q 002209 176 LGQEIEIQGFPDGAKLNFVTW-SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR--PLFQSPDIYLNAIFDNFVWV 252 (953)
Q Consensus 176 ~~~~~~l~~~~~~~~~~~~~w-SPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~--~lt~~~~~~~~~~~~~~~ws 252 (953)
.....+.+++ ..+...+| .+|...-.|... ..+-...||.++....... +...+ +.+.+.++.-.
T Consensus 135 -k~~~~~~Ght--~~ik~v~~v~~n~~~~~fvsa-----s~Dqtl~Lw~~~~~~~~~~~~~~~~G----Hk~~V~sVsv~ 202 (423)
T KOG0313|consen 135 -KSIKTIVGHT--GPIKSVAWVIKNSSSCLFVSA-----SMDQTLRLWKWNVGENKVKALKVCRG----HKRSVDSVSVD 202 (423)
T ss_pred -ceEEEEecCC--cceeeeEEEecCCccceEEEe-----cCCceEEEEEecCchhhhhHHhHhcc----cccceeEEEec
Confidence 3455565544 45666666 344432233331 1334567788776543322 22222 33347788888
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEE-cCC--ce-eEe
Q 002209 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS-LDG--TV-KEI 328 (953)
Q Consensus 253 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~-~~g--~~-~~l 328 (953)
+||.+++.++-+.... +|+.+...... .....+++.. .-... ..| .+ ..+
T Consensus 203 ~sgtr~~SgS~D~~lk------------iWs~~~~~~~~----~E~~s~~rrk----------~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 203 SSGTRFCSGSWDTMLK------------IWSVETDEEDE----LESSSNRRRK----------KQKREKEGGTRTPLVTL 256 (423)
T ss_pred CCCCeEEeecccceee------------ecccCCCcccc----ccccchhhhh----------hhhhhhcccccCceEEe
Confidence 9999888663332221 22200000000 0000000000 00000 112 11 122
Q ss_pred CCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceee
Q 002209 329 GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINW 406 (953)
Q Consensus 329 ~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~w 406 (953)
... ..+.++.|++. ..+|+.. +...|.+||+. ++....++... ....+..
T Consensus 257 ~GHt~~Vs~V~w~d~--~v~yS~S------------wDHTIk~WDletg~~~~~~~~~k--------------sl~~i~~ 308 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSDA--TVIYSVS------------WDHTIKVWDLETGGLKSTLTTNK--------------SLNCISY 308 (423)
T ss_pred cccccceeeEEEcCC--CceEeec------------ccceEEEEEeecccceeeeecCc--------------ceeEeec
Confidence 223 67888999983 3555542 23489999998 44444444421 1134667
Q ss_pred ccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCC-CCc--eEEeecccccCCeeeccCCceEEEEEecccCceEE
Q 002209 407 RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG-EGP--EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (953)
Q Consensus 407 spDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g-~~~--~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l 483 (953)
+|..+.|+-. +...++.++| |.++ +.. ..+..+..-+..+.|+|-..+++.+...++. .+|
T Consensus 309 ~~~~~Ll~~g-------------ssdr~irl~D--PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~kl 372 (423)
T KOG0313|consen 309 SPLSKLLASG-------------SSDRHIRLWD--PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VKL 372 (423)
T ss_pred ccccceeeec-------------CCCCceeecC--CCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-EEE
Confidence 7776655544 4455788998 4443 222 2356777788999999999887776655532 477
Q ss_pred EEEcCC
Q 002209 484 WVISPG 489 (953)
Q Consensus 484 ~~~d~~ 489 (953)
|-+...
T Consensus 373 WDvRS~ 378 (423)
T KOG0313|consen 373 WDVRST 378 (423)
T ss_pred EEeccC
Confidence 766543
|
|
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00018 Score=84.85 Aligned_cols=93 Identities=16% Similarity=0.060 Sum_probs=63.4
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh-----------------
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN----------------- 732 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~----------------- 732 (953)
.|+||++||... ........+..|+++||.|+++| .+|+|.+...
T Consensus 449 ~P~VVllHG~~g---------------~~~~~~~lA~~La~~Gy~VIaiD---lpGHG~S~~~~~~~~~~a~~~~~~~y~ 510 (792)
T TIGR03502 449 WPVVIYQHGITG---------------AKENALAFAGTLAAAGVATIAID---HPLHGARSFDANASGVNATNANVLAYM 510 (792)
T ss_pred CcEEEEeCCCCC---------------CHHHHHHHHHHHHhCCcEEEEeC---CCCCCccccccccccccccccCcccee
Confidence 689999999421 00111234566788999999954 4566665111
Q ss_pred --------hhhHHHHHHHHHHHHHHHH------Hc----CCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002209 733 --------DRFVEQLVACAEAAVEEVV------RR----GVAHPSKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 733 --------~~~~~~~~~D~~~~~~~l~------~~----~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
++-+.+.+.|+......+. +. ...+..++.++||||||.++..++...
T Consensus 511 Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 511 NLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 1235777889888887776 21 124567999999999999999998753
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00091 Score=72.10 Aligned_cols=139 Identities=9% Similarity=0.045 Sum_probs=77.0
Q ss_pred CCceeEe-CCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccc
Q 002209 322 DGTVKEI-GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVR 398 (953)
Q Consensus 322 ~g~~~~l-~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~ 398 (953)
+|..+.. ... ..+..++|.||...++|.... .+++-.+. ...+-+...+.
T Consensus 134 sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~--------------h~~IKpL~~n~k~i~WkAHD------------- 186 (737)
T KOG1524|consen 134 SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG--------------HISIKPLAANSKIIRWRAHD------------- 186 (737)
T ss_pred cchHHHHHhhcCceeEEEEECCCCCceEEecCC--------------eEEEeecccccceeEEeccC-------------
Confidence 6644332 222 667889999999999998732 45554443 11222222221
Q ss_pred cCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEeccc
Q 002209 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT 478 (953)
Q Consensus 399 ~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~ 478 (953)
+-+-.+.|++.+..|+-. +++-+.-+||. .|...-.-..++..+.+++|.||..+++.+.+
T Consensus 187 GiiL~~~W~~~s~lI~sg-------------GED~kfKvWD~---~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~n--- 247 (737)
T KOG1524|consen 187 GLVLSLSWSTQSNIIASG-------------GEDFRFKIWDA---QGANLFTSAAEEYAITSVAFNPEKDYLLWSYN--- 247 (737)
T ss_pred cEEEEeecCccccceeec-------------CCceeEEeecc---cCcccccCChhccceeeeeeccccceeeeeee---
Confidence 223457788877755443 23335557774 33222122345777889999999444443321
Q ss_pred CceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 479 RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 479 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.+..-. ...+.++. ++||+||..++...
T Consensus 248 ---t~R~~~-------------p~~GSifn------lsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 248 ---TARFSS-------------PRVGSIFN------LSWSADGTQATCGT 275 (737)
T ss_pred ---eeeecC-------------CCccceEE------EEEcCCCceeeccc
Confidence 111111 11222333 88999999888764
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00061 Score=71.71 Aligned_cols=73 Identities=12% Similarity=-0.060 Sum_probs=46.6
Q ss_pred CccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE--eecccccCCeeeccCCceEEEEEecc
Q 002209 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 400 ~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l--~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
++.+++.|+||+.++.. +-.+.|-++++ ..=+...+ ..+...+..+.|+||.++++-.+.+.
T Consensus 283 siSsl~VS~dGkf~AlG-------------T~dGsVai~~~---~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALG-------------TMDGSVAIYDA---KSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred cceeEEEcCCCcEEEEe-------------ccCCcEEEEEe---ceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 45689999999988877 33445666664 21122222 23455678899999999988765443
Q ss_pred cCceEEEEEcCCC
Q 002209 478 TRRTRTWVISPGS 490 (953)
Q Consensus 478 ~~~~~l~~~d~~~ 490 (953)
+ .+|..+..+.
T Consensus 347 ~--~~v~~l~vd~ 357 (398)
T KOG0771|consen 347 E--AAVTKLAVDK 357 (398)
T ss_pred c--eeEEEEeecc
Confidence 2 3566665543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0013 Score=72.66 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=44.2
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce-eecccCCCccccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
-+....|-|||..|+... +..|+++|+..|.. ..|-.+.+. +.-++||.||++++..
T Consensus 14 ci~d~afkPDGsqL~lAA----------g~rlliyD~ndG~llqtLKgHKDt-----VycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA----------GSRLLVYDTSDGTLLQPLKGHKDT-----VYCVAYAKDGKRFASG 71 (1081)
T ss_pred chheeEECCCCceEEEec----------CCEEEEEeCCCcccccccccccce-----EEEEEEccCCceeccC
Confidence 578899999999999876 56899999986654 444333332 7789999999998854
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0033 Score=65.67 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=42.5
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
....+++||||+.+||... .++...||+...++. ...+..... +..+.|+++|...++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~------~~~~~~L~~~~~~~~-~~~~~~g~~------l~~PS~d~~g~~W~v~ 83 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSE------GDGGRSLYVGPAGGP-VRPVLTGGS------LTRPSWDPDGWVWTVD 83 (253)
T ss_pred cccceEECCCCCeEEEEEE------cCCCCEEEEEcCCCc-ceeeccCCc------cccccccCCCCEEEEE
Confidence 6889999999999999872 346789999986554 333332222 6689999997655544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.011 Score=66.31 Aligned_cols=78 Identities=9% Similarity=-0.017 Sum_probs=50.8
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEec
Q 002209 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 397 ~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
+...+..++-||+|+.|+-....+. -....|++|+. ..=.+...|..+...+..++|||||++|+..+.+
T Consensus 524 HGyEv~~l~~s~~gnliASaCKS~~--------~ehAvI~lw~t--~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 524 HGYEVYALAISPTGNLIASACKSSL--------KEHAVIRLWNT--ANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred CceeEEEEEecCCCCEEeehhhhCC--------ccceEEEEEec--cchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence 3334567888999986665522211 23446888873 2112334577788888999999999999988755
Q ss_pred ccCceEEEEE
Q 002209 477 KTRRTRTWVI 486 (953)
Q Consensus 477 ~~~~~~l~~~ 486 (953)
.. ..||..
T Consensus 594 Rt--~sl~~~ 601 (764)
T KOG1063|consen 594 RT--VSLYEV 601 (764)
T ss_pred ce--EEeeee
Confidence 43 356655
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0094 Score=64.80 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=42.4
Q ss_pred EeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 451 LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 451 l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
+......+..++|||||+.|+..+.++ ..||+-++ +- +.+-+...-+..+.. +.||||||+|+....+
T Consensus 286 w~~~~g~in~f~FS~DG~~LA~VSqDG--fLRvF~fd--t~--eLlg~mkSYFGGLLC------vcWSPDGKyIvtGGED 353 (636)
T KOG2394|consen 286 WHIGEGSINEFAFSPDGKYLATVSQDG--FLRIFDFD--TQ--ELLGVMKSYFGGLLC------VCWSPDGKYIVTGGED 353 (636)
T ss_pred eEeccccccceeEcCCCceEEEEecCc--eEEEeecc--HH--HHHHHHHhhccceEE------EEEcCCccEEEecCCc
Confidence 344455678899999999999987654 23454444 31 222222222222222 8999999999988643
|
|
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0012 Score=71.14 Aligned_cols=136 Identities=18% Similarity=0.157 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCC--CCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC--CC---CcC----
Q 002209 734 RFVEQLVACAEAAVEEVVRRGVA--HPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT--LT---PFG---- 802 (953)
Q Consensus 734 ~~~~~~~~D~~~~~~~l~~~~~~--d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~--~~---~~~---- 802 (953)
+++-...-|++.|+.++.+.-.- +.-++.++|+|+||++|..++--.|..|.+++--++..-.. +. ..+
T Consensus 157 N~GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y 236 (403)
T PF11144_consen 157 NFGIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKY 236 (403)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCcccc
Confidence 44455578999999999886322 23489999999999999999999999999988777643211 00 000
Q ss_pred -----c--------ccccchhhhh---------HHHHHhcCccc--c---cCCC-CCc-EEEEEeCCCCCCCCchHHHHH
Q 002209 803 -----F--------QNEDRTLWEA---------TSTYVEMSPFM--S---ANKL-KKP-ILLVHGEEDNNSGTLTMQSDR 853 (953)
Q Consensus 803 -----~--------~~~~~~~~~~---------~~~~~~~sp~~--~---~~~i-~~P-~Li~~G~~D~~v~~~~~~~~~ 853 (953)
+ .....+.|.. .+.+.-++.++ + -++. +.| ....|+..|..+| .++-.+
T Consensus 237 ~~~~~~~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p--~~~K~~ 314 (403)
T PF11144_consen 237 ICSGEFFNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAP--AEDKEE 314 (403)
T ss_pred cccccccccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCC--HHHHHH
Confidence 0 0011334532 11111111111 1 1122 334 4556999999998 999999
Q ss_pred HHHHHHhCCCcEEEEEeC
Q 002209 854 FFNALKGHGALCRLVILP 871 (953)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~ 871 (953)
+++.++..|.++++.++.
T Consensus 315 l~~~l~~lgfda~l~lIk 332 (403)
T PF11144_consen 315 LYEILKNLGFDATLHLIK 332 (403)
T ss_pred HHHHHHHcCCCeEEEEec
Confidence 999999999999999884
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0094 Score=57.29 Aligned_cols=111 Identities=11% Similarity=0.149 Sum_probs=63.3
Q ss_pred cccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEE-eccCCCcccCCccccccccCccceeeccCCC
Q 002209 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 333 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~-l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
.+..++..|.|+.|+....+. ...+||+.|+...+ ...+. ..++.+.|||..-
T Consensus 233 avaav~vdpsgrll~sg~~ds-------------sc~lydirg~r~iq~f~phs-------------adir~vrfsp~a~ 286 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHADS-------------SCMLYDIRGGRMIQRFHPHS-------------ADIRCVRFSPGAH 286 (350)
T ss_pred eeEEEEECCCcceeeeccCCC-------------ceEEEEeeCCceeeeeCCCc-------------cceeEEEeCCCce
Confidence 456788999999887655332 66789998776543 22221 3457889999543
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE-----EeecccccCCeeeccCCceEEEEEecccCceEEEEE
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-----LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~-----l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~ 486 (953)
.++-- +....|.+-|+ .|.-..+ +..+....-...|.|..-.++.++.+.+ ..||.+
T Consensus 287 yllt~-------------syd~~ikltdl---qgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt--~tlwa~ 348 (350)
T KOG0641|consen 287 YLLTC-------------SYDMKIKLTDL---QGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT--ATLWAL 348 (350)
T ss_pred EEEEe-------------cccceEEEeec---ccchhhcCceEEEEeccCceEEEEecCccceeeeccCcce--EEEecc
Confidence 22221 33456777775 4433222 2233344455778887655444433332 257765
Q ss_pred c
Q 002209 487 S 487 (953)
Q Consensus 487 d 487 (953)
+
T Consensus 349 ~ 349 (350)
T KOG0641|consen 349 N 349 (350)
T ss_pred C
Confidence 4
|
|
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00074 Score=71.04 Aligned_cols=107 Identities=16% Similarity=0.158 Sum_probs=65.8
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH---cCcEEEEcCCCCCCCCCChhhh-----hhh---HHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA---RGFAILGGPTTPIIGEGDEEAN-----DRF---VEQ 738 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~---~G~~V~~~~~~~~~G~G~~~~~-----~~~---~~~ 738 (953)
.++++++-|.|.. ..++..+...|.+ ..|.|+. .+..|+...... ... .+.
T Consensus 2 ~~li~~IPGNPGl---------------v~fY~~Fl~~L~~~l~~~~~i~~---ish~Gh~~~~~~~~~~~~~~~~sL~~ 63 (266)
T PF10230_consen 2 RPLIVFIPGNPGL---------------VEFYEEFLSALYEKLNPQFEILG---ISHAGHSTSPSNSKFSPNGRLFSLQD 63 (266)
T ss_pred cEEEEEECCCCCh---------------HHHHHHHHHHHHHhCCCCCeeEE---ecCCCCcCCcccccccCCCCccCHHH
Confidence 4688999997632 2233344444443 4799998 455555443222 111 222
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC---CcccEEEEcccCC
Q 002209 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGAY 794 (953)
Q Consensus 739 ~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~~ 794 (953)
-++-..+.++.+.........++.++|||.|++|++.++-+.+ ..++.++...|..
T Consensus 64 QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 64 QIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred HHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 3333334444444332113568999999999999999999998 5788888877753
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0018 Score=67.64 Aligned_cols=103 Identities=14% Similarity=0.158 Sum_probs=60.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..+++||||+.+|++... +... .|++... ++ ....+ + .+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~------------------------~~~~------~L~~~~~--~~---~~~~~--~-~g~ 66 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEG------------------------DGGR------SLYVGPA--GG---PVRPV--L-TGG 66 (253)
T ss_pred cccceEECCCCCeEEEEEEc------------------------CCCC------EEEEEcC--CC---cceee--c-cCC
Confidence 46789999999999999831 1222 5677654 22 22222 1 334
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc--eeecccCCCccccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
....|+|++||...++ .+ ++....++. +...++ ...+...... ..+..+.+||||.++++.
T Consensus 67 ~l~~PS~d~~g~~W~v-~~------~~~~~~~~~-~~~~g~~~~~~v~~~~~~---~~I~~l~vSpDG~RvA~v 129 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTV-DD------GSGGVRVVR-DSASGTGEPVEVDWPGLR---GRITALRVSPDGTRVAVV 129 (253)
T ss_pred ccccccccCCCCEEEE-Ec------CCCceEEEE-ecCCCcceeEEecccccC---CceEEEEECCCCcEEEEE
Confidence 7899999999754444 32 222333333 322333 3333222211 127899999999999988
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00099 Score=69.34 Aligned_cols=123 Identities=18% Similarity=0.133 Sum_probs=80.5
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCC-CccchHHHHHH-HcCcEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFP-RIGSTSVLLWL-ARGFAI 715 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la-~~G~~V 715 (953)
...++.++. |+..+.+....-+...+ ---||++-|... .+.. ... .........++ ..|..|
T Consensus 111 ~~kRv~Iq~-D~~~IDt~~I~~~~a~~-----~RWiL~s~GNg~-------~~E~---~~~~~~~~~~~~~~ak~~~aNv 174 (365)
T PF05677_consen 111 SVKRVPIQY-DGVKIDTMAIHQPEAKP-----QRWILVSNGNGE-------CYEN---RAMLDYKDDWIQRFAKELGANV 174 (365)
T ss_pred ceeeEEEee-CCEEEEEEEeeCCCCCC-----CcEEEEEcCChH-------Hhhh---hhhhccccHHHHHHHHHcCCcE
Confidence 467788886 88999887765223222 234777766310 0010 000 00111223344 478999
Q ss_pred EEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHHHHHHHhC
Q 002209 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
+.++| +|.|.|.+..+ ...++.|..+.++||+++. .+.+++|.+.|||+||.++..++.+.
T Consensus 175 l~fNY---pGVg~S~G~~s-~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 175 LVFNY---PGVGSSTGPPS-RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred EEECC---CccccCCCCCC-HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 99555 67777766554 4899999999999998753 46789999999999999998866554
|
|
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0012 Score=72.78 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHhCCC-cccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCc
Q 002209 754 GVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKP 832 (953)
Q Consensus 754 ~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P 832 (953)
+..-..+|.|+|+|||+.++..+.....+ .+.|+|++.-.++...-+.+. +-+.+-.++.|
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdgprgi------------------rDE~Lldmk~P 306 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDGPRGI------------------RDEALLDMKQP 306 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCcccCC------------------cchhhHhcCCc
Confidence 34456789999999998888877766543 367777765433321111111 11223346899
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 002209 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (953)
Q Consensus 833 ~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (953)
+||+.|.+|..++ ++..+++.+++++. ++++++.+++|.+.
T Consensus 307 VLFV~Gsnd~mcs--pn~ME~vreKMqA~---~elhVI~~adhsma 347 (784)
T KOG3253|consen 307 VLFVIGSNDHMCS--PNSMEEVREKMQAE---VELHVIGGADHSMA 347 (784)
T ss_pred eEEEecCCcccCC--HHHHHHHHHHhhcc---ceEEEecCCCcccc
Confidence 9999999999998 88888888887765 78999999999874
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.014 Score=66.49 Aligned_cols=213 Identities=11% Similarity=0.052 Sum_probs=108.3
Q ss_pred ccceEec-----cCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEE--ecCCeEEEEEec
Q 002209 191 LNFVTWS-----QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW--VNNSTLLVCTIP 263 (953)
Q Consensus 191 ~~~~~wS-----PDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w--spDg~~l~~~~~ 263 (953)
..+|..| -||++|.. . +..+.+|-+++++.-+..+++..|+... +....+ .|+-.+++....
T Consensus 127 ~HHp~~s~t~g~ydGr~~fi-n-------dk~n~Rvari~l~~~~~~~i~~iPn~~~---~Hg~~~~~~p~t~yv~~~~e 195 (635)
T PRK02888 127 THHPHMSFTDGTYDGRYLFI-N-------DKANTRVARIRLDVMKCDKITELPNVQG---IHGLRPQKIPRTGYVFCNGE 195 (635)
T ss_pred cCCCcccccCCccceeEEEE-e-------cCCCcceEEEECccEeeceeEeCCCccC---ccccCccccCCccEEEeCcc
Confidence 4455555 48887655 3 3347889999999888888877676321 222222 366666664410
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCCCcccccccCC
Q 002209 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSP 341 (953)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~~~~~~~~~Sp 341 (953)
- . .|..+.|-.+.. ..+ ..+.+..+|. +-+ ..++.-++.....+++|
T Consensus 196 ~---~---~PlpnDGk~l~~----------------~~e---------y~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp 244 (635)
T PRK02888 196 F---R---IPLPNDGKDLDD----------------PKK---------YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY 244 (635)
T ss_pred c---c---cccCCCCCEeec----------------ccc---------eeEEEEEEECccceEEEEEEeCCCcccceECC
Confidence 0 0 000001100000 000 2234556666 432 23333335667789999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
||+++++++...+. ...+...+..........+.. +.-++.+||+...+.
T Consensus 245 dGk~afvTsyNsE~---------G~tl~em~a~e~d~~vvfni~----------------~iea~vkdGK~~~V~----- 294 (635)
T PRK02888 245 DGKYAFSTCYNSEE---------GVTLAEMMAAERDWVVVFNIA----------------RIEEAVKAGKFKTIG----- 294 (635)
T ss_pred CCCEEEEeccCccc---------CcceeeeccccCceEEEEchH----------------HHHHhhhCCCEEEEC-----
Confidence 99999888733211 113333333221111111100 112466788743321
Q ss_pred CCCcccccccCCeEEEEecCCCC----CCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQ----GEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~----g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
.+.|-++|. .+ +.+...........-++.+||||++++.+..... .+-++|.+.
T Consensus 295 ----------gn~V~VID~--~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~---tVSVIDv~k 352 (635)
T PRK02888 295 ----------GSKVPVVDG--RKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSP---TVTVIDVRK 352 (635)
T ss_pred ----------CCEEEEEEC--CccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCC---cEEEEEChh
Confidence 346788885 22 1222232333445567899999999988754332 466777665
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0012 Score=70.71 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=62.5
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
.....++++|..|+..+- .+-........+-....+++..+++.+++.-. .++|-++|+|.||.+...+++..+.
T Consensus 130 s~V~~l~~~g~~vfvIsw---~nPd~~~~~~~~edYi~e~l~~aid~v~~itg--~~~InliGyCvGGtl~~~ala~~~~ 204 (445)
T COG3243 130 SLVRWLLEQGLDVFVISW---RNPDASLAAKNLEDYILEGLSEAIDTVKDITG--QKDINLIGYCVGGTLLAAALALMAA 204 (445)
T ss_pred cHHHHHHHcCCceEEEec---cCchHhhhhccHHHHHHHHHHHHHHHHHHHhC--ccccceeeEecchHHHHHHHHhhhh
Confidence 356678899999998433 22222333334444555888888988887632 3689999999999999999998887
Q ss_pred c-ccEEEEcccCCC
Q 002209 783 L-FCCGIARSGAYN 795 (953)
Q Consensus 783 ~-~~a~v~~~~~~d 795 (953)
+ ++.+.......|
T Consensus 205 k~I~S~T~lts~~D 218 (445)
T COG3243 205 KRIKSLTLLTSPVD 218 (445)
T ss_pred cccccceeeecchh
Confidence 6 777776655444
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.08 Score=65.51 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=60.7
Q ss_pred CccceeeccCCCCceEEEE-eccCCCcccccccCCeEEEEecCCCCCCCceEEe-ecccccCCeeeccCCceEEEEEecc
Q 002209 400 GMRSINWRSDKPSTLYWAE-TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 400 ~~~~~~wspDg~~i~~~~~-~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~-~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
+...++|..||+.++...- ... +.+..+.+|+- +| +..-.. .-++-...++|-|.|..|+......
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~--------~~~R~iRVy~R---eG-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~ 278 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPET--------GSRRVIRVYSR---EG-ELQSTSEPVDGLEGALSWRPSGNLIASSQRLP 278 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCC--------CceeEEEEECC---Cc-eEEeccccCCCccCCccCCCCCCEEEEEEEcC
Confidence 4456999999997665521 111 12456777773 32 221111 1123334689999999988876533
Q ss_pred cCceEEEEEcCCCCCCCcEEe-ecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 478 TRRTRTWVISPGSKDVAPRIL-FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 478 ~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
....+..+..+|-....-.+ .+.....+.. +.|++|+..|+...
T Consensus 279 -~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~------l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 279 -DRHDVVFFERNGLRHGEFTLRFDPEEEKVIE------LAWNSDSEILAVWL 323 (928)
T ss_pred -CCcEEEEEecCCcEeeeEecCCCCCCceeeE------EEECCCCCEEEEEe
Confidence 33466666655521000111 1111112222 89999999999876
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=72.36 Aligned_cols=157 Identities=15% Similarity=0.152 Sum_probs=91.7
Q ss_pred CCcccccccCC-CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccC
Q 002209 331 PAVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 331 ~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
+..++.+.|.| |-.+||+...+. .|.+|.+..+...+....+... .......+.++.|.|=
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg-------------~i~lWr~~a~gl~e~~~tPe~~-----lt~h~eKI~slRfHPL 688 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDG-------------QINLWRLTANGLPENEMTPEKI-----LTIHGEKITSLRFHPL 688 (1012)
T ss_pred CceeeecccCCCChHHeeecccCc-------------eEEEEEeccCCCCcccCCccee-----eecccceEEEEEecch
Confidence 35678899999 888999887554 7888877633222211111100 0011123456777763
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCC
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
-.-++. ..+....|.+||+ .++.....+.++...+.+++|||||++++....++ +|.++++.
T Consensus 689 AadvLa------------~asyd~Ti~lWDl--~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg----~~rVy~Pr 750 (1012)
T KOG1445|consen 689 AADVLA------------VASYDSTIELWDL--ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG----TLRVYEPR 750 (1012)
T ss_pred hhhHhh------------hhhccceeeeeeh--hhhhhhheeccCcCceeEEEECCCCcceeeeecCc----eEEEeCCC
Confidence 221111 1234557889997 44445556778888889999999999999886554 68888877
Q ss_pred CCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
.++ ++ +.+.... .+..+. .+.|.-||+.|+....
T Consensus 751 s~e-~p--v~Eg~gp--vgtRgA-Ri~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 751 SRE-QP--VYEGKGP--VGTRGA-RILWACDGRIVIVVGF 784 (1012)
T ss_pred CCC-Cc--cccCCCC--ccCcce-eEEEEecCcEEEEecc
Confidence 752 22 2222111 011111 2667778887776653
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0083 Score=62.45 Aligned_cols=249 Identities=15% Similarity=0.135 Sum_probs=141.5
Q ss_pred eeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEe-cCCe-
Q 002209 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV-NNST- 256 (953)
Q Consensus 179 ~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~ws-pDg~- 256 (953)
+..+..+-+..+++.+.-+ +++|+... +...+.+++..|....++..+.+. +..++|- +|..
T Consensus 96 P~pl~~~~hdDWVSsv~~~--~~~Iltgs---------YDg~~riWd~~Gk~~~~~~Ght~~-----ik~v~~v~~n~~~ 159 (423)
T KOG0313|consen 96 PKPLQCFLHDDWVSSVKGA--SKWILTGS---------YDGTSRIWDLKGKSIKTIVGHTGP-----IKSVAWVIKNSSS 159 (423)
T ss_pred CCccccccchhhhhhhccc--CceEEEee---------cCCeeEEEecCCceEEEEecCCcc-----eeeeEEEecCCcc
Confidence 3334334444567777766 78998744 466778888887766666655543 6678886 3332
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee--EeC-CC-
Q 002209 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK--EIG-PP- 331 (953)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~--~l~-~~- 331 (953)
..++++ ..| .+-.||.++. .-..+ ... ..
T Consensus 160 ~~fvsa---------------------------------------s~D-------qtl~Lw~~~~~~~~~~~~~~~~GHk 193 (423)
T KOG0313|consen 160 CLFVSA---------------------------------------SMD-------QTLRLWKWNVGENKVKALKVCRGHK 193 (423)
T ss_pred ceEEEe---------------------------------------cCC-------ceEEEEEecCchhhhhHHhHhcccc
Confidence 233220 111 2345666665 22221 111 22
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEecc------------CCCcccCCc-cccccc
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD------------LPLAEDIPI-AFNSVR 398 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~------------~~~~~~~p~-~~~~~~ 398 (953)
..+.+++..+||.+++-.+.+. .|-+|+....+...+.. .......|. ...++.
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~D~-------------~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt 260 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSWDT-------------MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT 260 (423)
T ss_pred cceeEEEecCCCCeEEeecccc-------------eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence 7788899999999988887544 77788743221111111 011111222 334555
Q ss_pred cCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEeccc
Q 002209 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT 478 (953)
Q Consensus 399 ~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~ 478 (953)
.-+.++.|++ ...+|.. +-...|.+||+ ..++....++ .......+..+|..+.|+.++.+.
T Consensus 261 ~~Vs~V~w~d--~~v~yS~------------SwDHTIk~WDl--etg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr- 322 (423)
T KOG0313|consen 261 EPVSSVVWSD--ATVIYSV------------SWDHTIKVWDL--ETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDR- 322 (423)
T ss_pred cceeeEEEcC--CCceEee------------cccceEEEEEe--ecccceeeee-cCcceeEeecccccceeeecCCCC-
Confidence 5667899988 3355551 33457889997 3444443443 334466788999888888776543
Q ss_pred CceEEEEEcCCCCCCCcEEe-ecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 479 RRTRTWVISPGSKDVAPRIL-FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 479 ~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
.|.+.|+.++.+..... +-.+...+.+ +.|+|-..+++....
T Consensus 323 ---~irl~DPR~~~gs~v~~s~~gH~nwVss------vkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 323 ---HIRLWDPRTGDGSVVSQSLIGHKNWVSS------VKWSPTNEFQLVSGS 365 (423)
T ss_pred ---ceeecCCCCCCCceeEEeeecchhhhhh------eecCCCCceEEEEEe
Confidence 56677887765443332 2222223333 779999888776653
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0053 Score=62.34 Aligned_cols=215 Identities=13% Similarity=0.077 Sum_probs=114.8
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCC--eEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGK--HLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~--~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (953)
.|.|+|+... .+...|. ...+.++...|.|+-. +|+-.+ ++..|-++++..=+...-...
T Consensus 64 tI~IYDm~k~---~qlg~ll--~HagsitaL~F~~~~S~shLlS~s---------dDG~i~iw~~~~W~~~~slK~---- 125 (362)
T KOG0294|consen 64 TIHIYDMRKR---KQLGILL--SHAGSITALKFYPPLSKSHLLSGS---------DDGHIIIWRVGSWELLKSLKA---- 125 (362)
T ss_pred cEEEEeccch---hhhccee--ccccceEEEEecCCcchhheeeec---------CCCcEEEEEcCCeEEeeeecc----
Confidence 6899998431 1111222 1224788889998875 777644 255666666443222111111
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 321 (953)
..+.+..++..|-|+.-... ++...|..+|+
T Consensus 126 H~~~Vt~lsiHPS~KLALsV-------------------------------------------------g~D~~lr~WNL 156 (362)
T KOG0294|consen 126 HKGQVTDLSIHPSGKLALSV-------------------------------------------------GGDQVLRTWNL 156 (362)
T ss_pred cccccceeEecCCCceEEEE-------------------------------------------------cCCceeeeehh
Confidence 12227788889999765543 02234556777
Q ss_pred -CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccc
Q 002209 322 -DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVR 398 (953)
Q Consensus 322 -~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~p~~~~~~~ 398 (953)
.|+.-.+.+- ...+.+.|+|.|.+.++...+ .|-+|.++. +-.+.+....
T Consensus 157 V~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~--------------~i~i~q~d~A~v~~~i~~~~------------- 209 (362)
T KOG0294|consen 157 VRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN--------------KIDIYQLDNASVFREIENPK------------- 209 (362)
T ss_pred hcCccceeeccCCcceeeEEcCCCCEEEEEecc--------------EEEEEecccHhHhhhhhccc-------------
Confidence 7754443332 344568999999988877622 566776663 2222222210
Q ss_pred cCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCee-e-ccCCceEEEEEec
Q 002209 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGIS-W-CDDSLALVYESWY 476 (953)
Q Consensus 399 ~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~-~-SpDg~~l~~~~~~ 476 (953)
....+.|- ++..++.. .....+-++|- .+......+..+..++..+. + .|++.+|+.++.+
T Consensus 210 -r~l~~~~l-~~~~L~vG-------------~d~~~i~~~D~--ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSD 272 (362)
T KOG0294|consen 210 -RILCATFL-DGSELLVG-------------GDNEWISLKDT--DSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSD 272 (362)
T ss_pred -cceeeeec-CCceEEEe-------------cCCceEEEecc--CCCccceeeecchhheeeeEEEecCCceEEEEeccC
Confidence 00011121 12222221 11234556662 12223344566777776655 2 4678888877665
Q ss_pred ccCceEEEEEcCCCC
Q 002209 477 KTRRTRTWVISPGSK 491 (953)
Q Consensus 477 ~~~~~~l~~~d~~~~ 491 (953)
+ ...+|.++.++.
T Consensus 273 G--~I~vWd~~~~~k 285 (362)
T KOG0294|consen 273 G--FIKVWDIDMETK 285 (362)
T ss_pred c--eEEEEEcccccc
Confidence 4 348888888764
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0027 Score=63.54 Aligned_cols=113 Identities=19% Similarity=0.304 Sum_probs=73.9
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce--eecccCCCccccccccceEEec--CCeEEEEEecCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIYLNAIFDNFVWVN--NSTLLVCTIPLL 265 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~wsp--Dg~~l~~~~~~~ 265 (953)
.+..+.|-||++.|+-.. ..+|-+++++.+.. ..+...........+.+.+||| ||..++.+
T Consensus 125 ~i~cvew~Pns~klasm~----------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt---- 190 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD----------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT---- 190 (370)
T ss_pred ceeeEEEcCCCCeeEEec----------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe----
Confidence 678899999999999865 44666666665433 2222222111122255788997 88888866
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC--CcccccccCC
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP--AVYTSLDPSP 341 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~--~~~~~~~~Sp 341 (953)
+.+.|+-+|+ +- +...|... ..+.++.|.|
T Consensus 191 ----------------------------------------------~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp 224 (370)
T KOG1007|consen 191 ----------------------------------------------SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP 224 (370)
T ss_pred ----------------------------------------------CCCcEEEEEccchhhhcchhhhhcceeeeccCCC
Confidence 3356667776 32 33333332 4578899999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEecc
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 374 (953)
+-++++++..+. +.|.+||..
T Consensus 225 nkq~~lvt~gDd------------gyvriWD~R 245 (370)
T KOG1007|consen 225 NKQHILVTCGDD------------GYVRIWDTR 245 (370)
T ss_pred CceEEEEEcCCC------------ccEEEEecc
Confidence 999999887553 478899986
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0098 Score=63.48 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=40.3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
.+...+.||||++||+. .....|-+++.++.+.++.+...-.. +.+++|-..-..+|..
T Consensus 204 eil~~avS~Dgkylatg---------g~d~~v~Iw~~~t~ehv~~~~ghr~~----V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATG---------GRDRHVQIWDCDTLEHVKVFKGHRGA----VSSLAFRKGTSELYSA 262 (479)
T ss_pred eeEEEEEcCCCcEEEec---------CCCceEEEecCcccchhhcccccccc----eeeeeeecCccceeee
Confidence 56778899999999993 34667778999999887774433322 5666775443445544
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00043 Score=81.57 Aligned_cols=211 Identities=16% Similarity=0.217 Sum_probs=124.3
Q ss_pred CCCCCcccceEeccCCCe----EEEEEeeccccCCCCcceEEEEECCC----CceeecccCCCccccccccceEEecCCe
Q 002209 185 FPDGAKLNFVTWSQDGKH----LAFSIRIDAEDSSSSKLRVWVADVDT----GKARPLFQSPDIYLNAIFDNFVWVNNST 256 (953)
Q Consensus 185 ~~~~~~~~~~~wSPDG~~----laf~~~~~~~~~~~~~~~l~~~d~~~----g~~~~lt~~~~~~~~~~~~~~~wspDg~ 256 (953)
+.....-...+|++-|.. ||- +.+++.|-+++++. ++..-|..... +++.+..+.|.+...
T Consensus 61 ~~s~~rF~kL~W~~~g~~~~GlIaG---------G~edG~I~ly~p~~~~~~~~~~~la~~~~--h~G~V~gLDfN~~q~ 129 (1049)
T KOG0307|consen 61 LQSSNRFNKLAWGSYGSHSHGLIAG---------GLEDGNIVLYDPASIIANASEEVLATKSK--HTGPVLGLDFNPFQG 129 (1049)
T ss_pred ccccccceeeeecccCCCccceeec---------cccCCceEEecchhhccCcchHHHhhhcc--cCCceeeeeccccCC
Confidence 444446788999998887 443 33344555555443 33222322222 334477888988876
Q ss_pred -EEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCC----C
Q 002209 257 -LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP----P 331 (953)
Q Consensus 257 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~----~ 331 (953)
+|+.. . ..++|+++|+..-.+..+. .
T Consensus 130 nlLASG----------------------------------------a---------~~geI~iWDlnn~~tP~~~~~~~~ 160 (1049)
T KOG0307|consen 130 NLLASG----------------------------------------A---------DDGEILIWDLNKPETPFTPGSQAP 160 (1049)
T ss_pred ceeecc----------------------------------------C---------CCCcEEEeccCCcCCCCCCCCCCC
Confidence 55532 1 3467889998432222222 1
Q ss_pred -CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccC
Q 002209 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 332 -~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
..+..++|...=.+|+.+... .+.+.+||+..++ +-.+...+.. .....++|.||
T Consensus 161 ~~eI~~lsWNrkvqhILAS~s~------------sg~~~iWDlr~~~pii~ls~~~~~-----------~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 161 PSEIKCLSWNRKVSHILASGSP------------SGRAVIWDLRKKKPIIKLSDTPGR-----------MHCSVLAWHPD 217 (1049)
T ss_pred cccceEeccchhhhHHhhccCC------------CCCceeccccCCCcccccccCCCc-----------cceeeeeeCCC
Confidence 566777787766666555422 2367899998652 2233333211 12357999999
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCC
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
..+-+...... +....|-+||+ .......+.++.+...+-++.|++.+..++.++..++ ++...+.+
T Consensus 218 ~aTql~~As~d---------d~~PviqlWDl-R~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~---~ii~wN~~ 284 (1049)
T KOG0307|consen 218 HATQLLVASGD---------DSAPVIQLWDL-RFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDN---RIICWNPN 284 (1049)
T ss_pred CceeeeeecCC---------CCCceeEeecc-cccCCchhhhcccccceeeeccCCCCchhhhcccCCC---CeeEecCC
Confidence 98765552222 22335677886 2233344556777777888999998877666655442 67788888
Q ss_pred CC
Q 002209 490 SK 491 (953)
Q Consensus 490 ~~ 491 (953)
++
T Consensus 285 tg 286 (1049)
T KOG0307|consen 285 TG 286 (1049)
T ss_pred Cc
Confidence 75
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.035 Score=66.28 Aligned_cols=162 Identities=18% Similarity=0.199 Sum_probs=93.9
Q ss_pred hcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecC
Q 002209 106 VDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF 185 (953)
Q Consensus 106 ~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~ 185 (953)
........+.|||||+.++|.... +... ..+|+.++. | .++..
T Consensus 57 ~~~~~~~~~~~spdg~~~~~~~~~-----------------------~~~~------~~l~l~~~~--g------~~~~~ 99 (620)
T COG1506 57 TFGGGVSELRWSPDGSVLAFVSTD-----------------------GGRV------AQLYLVDVG--G------LITKT 99 (620)
T ss_pred ccCCcccccccCCCCCEEEEEecc-----------------------CCCc------ceEEEEecC--C------ceeee
Confidence 334467788999999999999853 1122 267887762 2 12111
Q ss_pred CCCCcccceEeccCCCeEEEEEeecc-c----------------cCC-CCcceEEEEECCCCceeecccCCCcccccccc
Q 002209 186 PDGAKLNFVTWSQDGKHLAFSIRIDA-E----------------DSS-SSKLRVWVADVDTGKARPLFQSPDIYLNAIFD 247 (953)
Q Consensus 186 ~~~~~~~~~~wSPDG~~laf~~~~~~-~----------------~~~-~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~ 247 (953)
. ..+..+.|+|+|+.+++...... . ... ....++|++|.++ ....+...... +.
T Consensus 100 ~--~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~~~~~~~-----~~ 171 (620)
T COG1506 100 A--FGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES-KLIKLGLGNLD-----VV 171 (620)
T ss_pred e--cccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc-ccccccCCCCc-----ee
Confidence 1 35788999999999999321110 0 011 1356677777665 33333222211 33
Q ss_pred ceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee
Q 002209 248 NFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK 326 (953)
Q Consensus 248 ~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~ 326 (953)
.+.|.+|++.++........ ++ .......... ++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~------------------------------------~~------~~~~~~~~~~~~~~~~ 209 (620)
T COG1506 172 SFATDGDGRLVASIRLDDDA------------------------------------DP------WVTNLYVLIEGNGELE 209 (620)
T ss_pred eeeeCCCCceeEEeeecccc------------------------------------CC------ceEeeEEEecCCCceE
Confidence 55555666666655221110 00 1122333333 67777
Q ss_pred EeCCC-CcccccccCCCCcEEEEEEecCC
Q 002209 327 EIGPP-AVYTSLDPSPDEKYILISSIHRP 354 (953)
Q Consensus 327 ~l~~~-~~~~~~~~SpDG~~l~~~~~~~~ 354 (953)
.++.. .....+.|.+||+.+++.....+
T Consensus 210 ~~~~~~~~~~~~~~~~~gk~~~~~~~~~~ 238 (620)
T COG1506 210 SLTPGEGSISKLAFDADGKSIALLGTESD 238 (620)
T ss_pred EEcCCCceeeeeeeCCCCCeeEEeccCCc
Confidence 77766 67888999999999998886553
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00087 Score=68.99 Aligned_cols=136 Identities=10% Similarity=0.060 Sum_probs=83.7
Q ss_pred cceEEEEEc-CC-ceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 313 TTQLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 313 ~~~l~~~~~-~g-~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
...|+++|+ .+ .++.+...-....++|+|.+ ..|+.... ..++|.+|...-. +++..+.
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea--fnF~~a~E-----------D~nlY~~DmR~l~-~p~~v~~----- 269 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILTMRTNTICWNPEA--FNFVAANE-----------DHNLYTYDMRNLS-RPLNVHK----- 269 (433)
T ss_pred CCceEEEecccCCccceeeeeccccceecCccc--cceeeccc-----------cccceehhhhhhc-ccchhhc-----
Confidence 356889999 55 44555544455678999943 44444221 3378888875211 1111110
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE--eecccccCCeeeccCCc
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSL 468 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l--~~~~~~~~~~~~SpDg~ 468 (953)
+.-..+-++.|||-|+.++-. +-...|.++.+ ..+..+.+ +.--..+.++.||-|.+
T Consensus 270 -----dhvsAV~dVdfsptG~Efvsg-------------syDksIRIf~~---~~~~SRdiYhtkRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 270 -----DHVSAVMDVDFSPTGQEFVSG-------------SYDKSIRIFPV---NHGHSRDIYHTKRMQHVFCVKYSMDSK 328 (433)
T ss_pred -----ccceeEEEeccCCCcchhccc-------------cccceEEEeec---CCCcchhhhhHhhhheeeEEEEecccc
Confidence 111234578999999987654 33446667764 44555544 44445677899999999
Q ss_pred eEEEEEecccCceEEEEEcCCC
Q 002209 469 ALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
+|+..+++. +.+||...+..
T Consensus 329 yi~SGSdd~--nvRlWka~Ase 348 (433)
T KOG0268|consen 329 YIISGSDDG--NVRLWKAKASE 348 (433)
T ss_pred EEEecCCCc--ceeeeecchhh
Confidence 998877654 45899887654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.03 Score=56.94 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=73.4
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.++...|||.+..|+..+- ...|.+++....+.+........ +-.++|.++.+ +++..
T Consensus 15 ~IS~v~f~~~~~~LLvssW---------DgslrlYdv~~~~l~~~~~~~~p-----lL~c~F~d~~~-~~~G~------- 72 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSW---------DGSLRLYDVPANSLKLKFKHGAP-----LLDCAFADEST-IVTGG------- 72 (323)
T ss_pred ceeeEEEcCcCCcEEEEec---------cCcEEEEeccchhhhhheecCCc-----eeeeeccCCce-EEEec-------
Confidence 6899999999998888663 34555566555555555444432 55788877554 44330
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~ 347 (953)
-.++|.++|+ +|+...+..+ ..++.+..++--..++
T Consensus 73 ------------------------------------------~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vI 110 (323)
T KOG1036|consen 73 ------------------------------------------LDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVI 110 (323)
T ss_pred ------------------------------------------cCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEE
Confidence 2367889999 8888777766 7788888886444444
Q ss_pred EEEecCCccccccCCCCCcceEEEeccC
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g 375 (953)
..+ |.+.|.+||...
T Consensus 111 sgs-------------WD~~ik~wD~R~ 125 (323)
T KOG1036|consen 111 SGS-------------WDKTIKFWDPRN 125 (323)
T ss_pred Ecc-------------cCccEEEEeccc
Confidence 444 455899999875
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0013 Score=71.91 Aligned_cols=88 Identities=9% Similarity=0.135 Sum_probs=53.5
Q ss_pred cceEEEEEcCCceeEeC--CC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcc
Q 002209 313 TTQLVLVSLDGTVKEIG--PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAE 388 (953)
Q Consensus 313 ~~~l~~~~~~g~~~~l~--~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~ 388 (953)
...+++..++....+.. .. +.+..+.|.|---++++++.+ .|.+||+...+ ++.|....
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~--------------~vRiYdL~kqelvKkL~tg~--- 607 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR--------------SVRIYDLSKQELVKKLLTGS--- 607 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc--------------ceEEEehhHHHHHHHHhcCC---
Confidence 34566777733222222 22 677888999988888777633 78999997533 22222211
Q ss_pred cCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEec
Q 002209 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQA 440 (953)
Q Consensus 389 ~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~ 440 (953)
..+.+++.+|.|..|+.. +....+..+|+
T Consensus 608 ----------kwiS~msihp~GDnli~g-------------s~d~k~~WfDl 636 (733)
T KOG0650|consen 608 ----------KWISSMSIHPNGDNLILG-------------SYDKKMCWFDL 636 (733)
T ss_pred ----------eeeeeeeecCCCCeEEEe-------------cCCCeeEEEEc
Confidence 123467888988887776 33456666665
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0032 Score=69.04 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=40.6
Q ss_pred cCCCCCcEEEEEeCCCCCCCCchHHHHHHH-------HHHHhCCCcEEEEEeCCCCcc
Q 002209 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFF-------NALKGHGALCRLVILPFESHG 876 (953)
Q Consensus 826 ~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~-------~~l~~~g~~~~~~~~~~~~H~ 876 (953)
+++|++|++++.|..|.+.| ++|+..+. +.++..|..+-+.+-+..||.
T Consensus 293 Lr~Ir~Piivfas~gDnITP--P~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHL 348 (581)
T PF11339_consen 293 LRNIRSPIIVFASYGDNITP--PQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHL 348 (581)
T ss_pred hhhCCCCEEEEeccCCCCCC--hhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCce
Confidence 46789999999999999988 99986554 456677777888888989995
|
Their function is unknown. |
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00093 Score=68.92 Aligned_cols=151 Identities=15% Similarity=0.097 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----cccEEEEcccCCCCCCCCcCcc-----c
Q 002209 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-----LFCCGIARSGAYNRTLTPFGFQ-----N 805 (953)
Q Consensus 736 ~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~~~~d~~~~~~~~~-----~ 805 (953)
......-+..++.+|.+++.+ +++-++||||||..++.++..+.. .+...|++++.++......... .
T Consensus 82 ~~~qa~wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~~~~~ 159 (255)
T PF06028_consen 82 YKKQAKWLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQNDLN 159 (255)
T ss_dssp HHHHHHHHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTTT-CS
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchhhhhc
Confidence 344556677888999998776 599999999999999999987532 4788888888887543211000 0
Q ss_pred ccchhhhhHHHHHhcCcccccCCC--CCcEEEEEeC------CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC--CCc
Q 002209 806 EDRTLWEATSTYVEMSPFMSANKL--KKPILLVHGE------EDNNSGTLTMQSDRFFNALKGHGALCRLVILPF--ESH 875 (953)
Q Consensus 806 ~~~~~~~~~~~~~~~sp~~~~~~i--~~P~Li~~G~------~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~H 875 (953)
..+ +-.....|...-... -.++ ...+|-|.|. .|.+|| ...++.+...++......+-.++.| +.|
T Consensus 160 ~~g-p~~~~~~y~~l~~~~-~~~~p~~i~VLnI~G~~~~g~~sDG~V~--~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~H 235 (255)
T PF06028_consen 160 KNG-PKSMTPMYQDLLKNR-RKNFPKNIQVLNIYGDLEDGSNSDGIVP--NASSLSLRYLLKNRAKSYQEKTVTGKDAQH 235 (255)
T ss_dssp TT--BSS--HHHHHHHHTH-GGGSTTT-EEEEEEEESBTTCSBTSSSB--HHHHCTHHHHCTTTSSEEEEEEEESGGGSC
T ss_pred ccC-CcccCHHHHHHHHHH-HhhCCCCeEEEEEecccCCCCCCCeEEe--HHHHHHHHHHhhcccCceEEEEEECCCCcc
Confidence 111 111122222211000 0122 3569999998 899998 8888888888887777777777776 578
Q ss_pred cCCCcccHHHHHHHHHHHH
Q 002209 876 GYAARESIMHVLWETDRWL 894 (953)
Q Consensus 876 ~~~~~~~~~~~~~~i~~fl 894 (953)
.-. .++ ..+.+.|.+||
T Consensus 236 S~L-heN-~~V~~~I~~FL 252 (255)
T PF06028_consen 236 SQL-HEN-PQVDKLIIQFL 252 (255)
T ss_dssp CGG-GCC-HHHHHHHHHHH
T ss_pred ccC-CCC-HHHHHHHHHHh
Confidence 653 233 46667777776
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00026 Score=64.94 Aligned_cols=118 Identities=25% Similarity=0.303 Sum_probs=82.3
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCccc
Q 002209 745 AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFM 824 (953)
Q Consensus 745 ~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 824 (953)
+.-.|++++. =+.+..+.|.||||+.|+.+..++|++|..+|+.+|++|....--++.+. . .|. .+|.+
T Consensus 89 AyerYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yydd-------D-v~y-nsP~d 157 (227)
T COG4947 89 AYERYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYDD-------D-VYY-NSPSD 157 (227)
T ss_pred HHHHHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccccccC-------c-eee-cChhh
Confidence 3345666542 24568899999999999999999999999999999998854211111111 0 111 45555
Q ss_pred ccCCCCC----------cEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002209 825 SANKLKK----------PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (953)
Q Consensus 825 ~~~~i~~----------P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (953)
++..+.. -+.+..|..|+.. .+..++.+.|.++.++..+.++.+-.|.+
T Consensus 158 ylpg~~dp~~l~rlr~~~~vfc~G~e~~~L----~~~~~L~~~l~dKqipaw~~~WggvaHdw 216 (227)
T COG4947 158 YLPGLADPFRLERLRRIDMVFCIGDEDPFL----DNNQHLSRLLSDKQIPAWMHVWGGVAHDW 216 (227)
T ss_pred hccCCcChHHHHHHhhccEEEEecCccccc----cchHHHHHHhccccccHHHHHhccccccc
Confidence 5555443 3777889988774 46678889998888888887887777765
|
|
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0016 Score=61.14 Aligned_cols=119 Identities=14% Similarity=0.082 Sum_probs=80.0
Q ss_pred CCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEE
Q 002209 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVH 837 (953)
Q Consensus 758 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~ 837 (953)
++.+.|++||.|..+++..+.+....++++.+++|+--..... .......++|.. ...+.-|.++++
T Consensus 58 ~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~~------------~~~~~~tf~~~p-~~~lpfps~vva 124 (181)
T COG3545 58 EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPEI------------RPKHLMTFDPIP-REPLPFPSVVVA 124 (181)
T ss_pred CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCcccccc------------chhhccccCCCc-cccCCCceeEEE
Confidence 4569999999999999999988766899999999863111000 001111222221 233456899999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCC--CcccHHHHHHHHHHHHHH
Q 002209 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA--ARESIMHVLWETDRWLQK 896 (953)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~--~~~~~~~~~~~i~~fl~~ 896 (953)
+.+|+.|+ ++++..+.+++.. .++....+||... ......+.+..+.+|+.+
T Consensus 125 SrnDp~~~--~~~a~~~a~~wgs-----~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 125 SRNDPYVS--YEHAEDLANAWGS-----ALVDVGEGGHINAESGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred ecCCCCCC--HHHHHHHHHhccH-----hheecccccccchhhcCCCcHHHHHHHHHHhhh
Confidence 99999999 9999999888865 4777888899642 233344555555555443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0067 Score=61.60 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=63.5
Q ss_pred CCCCCCceecCCCC--EEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecC
Q 002209 108 APPLPALSFSPQRD--KILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF 185 (953)
Q Consensus 108 ~~~~~~~~~SPDG~--~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~ 185 (953)
+..+..+.|+|+-. +|+..+.+ +.|.+|++. .-..+..+
T Consensus 83 agsitaL~F~~~~S~shLlS~sdD---------------------------------G~i~iw~~~------~W~~~~sl 123 (362)
T KOG0294|consen 83 AGSITALKFYPPLSKSHLLSGSDD---------------------------------GHIIIWRVG------SWELLKSL 123 (362)
T ss_pred ccceEEEEecCCcchhheeeecCC---------------------------------CcEEEEEcC------CeEEeeee
Confidence 44567778888775 66666554 367888872 22222222
Q ss_pred C-CCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 186 P-DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 186 ~-~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
. +...++..+..|-|+ ||.+.. +...|..|++-.|..-.++..... ...+.|+|.|.++++.
T Consensus 124 K~H~~~Vt~lsiHPS~K-LALsVg--------~D~~lr~WNLV~Gr~a~v~~L~~~-----at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 124 KAHKGQVTDLSIHPSGK-LALSVG--------GDQVLRTWNLVRGRVAFVLNLKNK-----ATLVSWSPQGDHFVVS 186 (362)
T ss_pred cccccccceeEecCCCc-eEEEEc--------CCceeeeehhhcCccceeeccCCc-----ceeeEEcCCCCEEEEE
Confidence 2 123699999999887 554432 245666777766655444443432 3468999999988876
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.029 Score=56.44 Aligned_cols=111 Identities=13% Similarity=0.159 Sum_probs=72.4
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCe---EEEEEecCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST---LLVCTIPLLR 266 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~---~l~~~~~~~~ 266 (953)
.+....|-|=..-+..++. -...|-+||..+-+....+..++. +.+-+|||=.. .|+..
T Consensus 103 ~iss~~WyP~DtGmFtssS--------FDhtlKVWDtnTlQ~a~~F~me~~-----VYshamSp~a~sHcLiA~g----- 164 (397)
T KOG4283|consen 103 AISSAIWYPIDTGMFTSSS--------FDHTLKVWDTNTLQEAVDFKMEGK-----VYSHAMSPMAMSHCLIAAG----- 164 (397)
T ss_pred eeeeeEEeeecCceeeccc--------ccceEEEeecccceeeEEeecCce-----eehhhcChhhhcceEEEEe-----
Confidence 6777888885555544332 245778888877665544444443 55777887553 23322
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCC-CcccccccCCCC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-AVYTSLDPSPDE 343 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~-~~~~~~~~SpDG 343 (953)
+...++.+-|+ +|.-.- |... +++-.+.|||-.
T Consensus 165 --------------------------------------------tr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 165 --------------------------------------------TRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred --------------------------------------------cCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 02246677888 886544 3444 888999999999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEecc
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 374 (953)
.+++++..- .+.+.+||+.
T Consensus 201 e~vLatgsa------------Dg~irlWDiR 219 (397)
T KOG4283|consen 201 EWVLATGSA------------DGAIRLWDIR 219 (397)
T ss_pred eeEEEecCC------------CceEEEEEee
Confidence 999988632 3588999886
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.048 Score=55.56 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=58.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.++.+.|||.+..|+.++.+ +.|.++++... ..+.. +..+.
T Consensus 15 ~IS~v~f~~~~~~LLvssWD---------------------------------gslrlYdv~~~----~l~~~--~~~~~ 55 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWD---------------------------------GSLRLYDVPAN----SLKLK--FKHGA 55 (323)
T ss_pred ceeeEEEcCcCCcEEEEecc---------------------------------CcEEEEeccch----hhhhh--eecCC
Confidence 36788999999888888776 36788888432 11111 33334
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEec
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN 253 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp 253 (953)
.+..-.|.+ ..++++ ++-...|.++|+.+++..++-.+.+. +..+..++
T Consensus 56 plL~c~F~d-~~~~~~---------G~~dg~vr~~Dln~~~~~~igth~~~-----i~ci~~~~ 104 (323)
T KOG1036|consen 56 PLLDCAFAD-ESTIVT---------GGLDGQVRRYDLNTGNEDQIGTHDEG-----IRCIEYSY 104 (323)
T ss_pred ceeeeeccC-CceEEE---------eccCceEEEEEecCCcceeeccCCCc-----eEEEEeec
Confidence 455566764 456666 33467899999999988877665543 44555553
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.06 Score=61.18 Aligned_cols=110 Identities=18% Similarity=0.269 Sum_probs=66.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+...++|||++.+|++.+. .++... .|.+.|+.+ |.. ....++ .
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~----------------------~G~e~y------~lr~kdL~t-g~~-~~d~i~-----~ 174 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDV----------------------LGDEQY------TLRFKDLAT-GEE-LPDEIT-----N 174 (682)
T ss_pred eeeeeeeCCCCceEEEEEec----------------------ccccEE------EEEEEeccc-ccc-cchhhc-----c
Confidence 35678899999999999874 233444 788999865 211 111111 1
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC--CceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT--GKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
......|.+|++.+.|++..+ ..--..||...+.+ .+.+.+...++..+ .-++.=|...+.|++.
T Consensus 175 ~~~~~~Wa~d~~~lfYt~~d~----~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f---~~~v~~s~s~~yi~i~ 241 (682)
T COG1770 175 TSGSFAWAADGKTLFYTRLDE----NHRPDKVWRHRLGTPGSSDELVYEEKDDRF---FLSVGRSRSEAYIVIS 241 (682)
T ss_pred cccceEEecCCCeEEEEEEcC----CCCcceEEEEecCCCCCcceEEEEcCCCcE---EEEeeeccCCceEEEE
Confidence 356789999999999988533 22356788888776 34444443333211 1233344555566654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0022 Score=66.47 Aligned_cols=135 Identities=17% Similarity=0.139 Sum_probs=84.2
Q ss_pred eceEEEEccCCCCCCceeeee---cC-CCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCC
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQ---GF-PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP 238 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~---~~-~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~ 238 (953)
..|||+|+++ -+.|. .. +........+.++.+.+|||-..+ ...+|+++|+..-++.-.....
T Consensus 106 e~IyIydI~~------MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-------t~GdV~l~d~~nl~~v~~I~aH 172 (391)
T KOG2110|consen 106 ESIYIYDIKD------MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-------TSGDVVLFDTINLQPVNTINAH 172 (391)
T ss_pred ccEEEEeccc------ceeehhhhccCCCccceEeeccCCCCceEEecCCC-------CCceEEEEEcccceeeeEEEec
Confidence 5799999953 22222 12 112234555566677799996533 2678888887764433222222
Q ss_pred CccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEE
Q 002209 239 DIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (953)
Q Consensus 239 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 318 (953)
.. .+..++|++||..|+.++. ...-|.+
T Consensus 173 ~~----~lAalafs~~G~llATASe------------------------------------------------KGTVIRV 200 (391)
T KOG2110|consen 173 KG----PLAALAFSPDGTLLATASE------------------------------------------------KGTVIRV 200 (391)
T ss_pred CC----ceeEEEECCCCCEEEEecc------------------------------------------------CceEEEE
Confidence 22 2678999999999996611 1123444
Q ss_pred EEc-CC-ceeEeCCC---CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC
Q 002209 319 VSL-DG-TVKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (953)
Q Consensus 319 ~~~-~g-~~~~l~~~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g 375 (953)
+.+ +| +...+..+ ..+.+++||||+++|+.+++.. .|.++.++.
T Consensus 201 f~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te-------------TVHiFKL~~ 249 (391)
T KOG2110|consen 201 FSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE-------------TVHIFKLEK 249 (391)
T ss_pred EEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC-------------eEEEEEecc
Confidence 555 66 33334333 5678999999999999998544 788887763
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0088 Score=70.46 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=51.9
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCC--ceeecccCCCcc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSPDIY 241 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g--~~~~lt~~~~~~ 241 (953)
+|.+.|. || ...+.+. +.+...+.+|.|||||++|||+.... .-.+...||+.++++. ...+| +..
T Consensus 330 ~L~~~D~--dG--~n~~~ve-~~~~~~i~sP~~SPDG~~vAY~ts~e---~~~g~s~vYv~~L~t~~~~~vkl---~ve- 397 (912)
T TIGR02171 330 NLAYIDY--TK--GASRAVE-IEDTISVYHPDISPDGKKVAFCTGIE---GLPGKSSVYVRNLNASGSGLVKL---PVE- 397 (912)
T ss_pred eEEEEec--CC--CCceEEE-ecCCCceecCcCCCCCCEEEEEEeec---CCCCCceEEEEehhccCCCceEe---ecc-
Confidence 6788887 55 3444441 22334789999999999999944322 2236788999999863 23344 211
Q ss_pred ccccccceEEe--cCC-eEEEEEe
Q 002209 242 LNAIFDNFVWV--NNS-TLLVCTI 262 (953)
Q Consensus 242 ~~~~~~~~~ws--pDg-~~l~~~~ 262 (953)
+ ...+.|- .+| +.|+|++
T Consensus 398 -~--aaiprwrv~e~gdt~ivyv~ 418 (912)
T TIGR02171 398 -N--AAIPRWRVLENGDTVIVYVS 418 (912)
T ss_pred -c--ccccceEecCCCCeEEEEEc
Confidence 1 2245554 666 5677773
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0075 Score=67.50 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=47.4
Q ss_pred eEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCcccccccc
Q 002209 515 MRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLN 594 (953)
Q Consensus 515 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d 594 (953)
+..-|..++++....++ .|.+||+.+|+.++.+.++-. -+... ....++|.
T Consensus 602 m~Vdp~~k~v~t~cQDr---------------------nirif~i~sgKq~k~FKgs~~--~eG~l------IKv~lDPS 652 (1080)
T KOG1408|consen 602 MAVDPTSKLVVTVCQDR---------------------NIRIFDIESGKQVKSFKGSRD--HEGDL------IKVILDPS 652 (1080)
T ss_pred eeeCCCcceEEEEeccc---------------------ceEEEeccccceeeeeccccc--CCCce------EEEEECCC
Confidence 44566667776665433 399999999999999877632 00000 11356777
Q ss_pred CCEEEEEEecCCCCceEEEEECCCCCe
Q 002209 595 QLKILTSKESKTENTQYYIQSWPDKKS 621 (953)
Q Consensus 595 g~~l~~~~~~~~~p~~l~~~~~~~g~~ 621 (953)
|-+++..++..+ |.++|..+|+.
T Consensus 653 giY~atScsdkt----l~~~Df~sgEc 675 (1080)
T KOG1408|consen 653 GIYLATSCSDKT----LCFVDFVSGEC 675 (1080)
T ss_pred ccEEEEeecCCc----eEEEEeccchh
Confidence 877777666543 77777777753
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.011 Score=63.37 Aligned_cols=145 Identities=16% Similarity=0.155 Sum_probs=89.6
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..++.+.+.-...+||.++.. ++|.+..+.++... .++...+ ..+|-+.+||-.
T Consensus 122 stvt~v~YN~~DeyiAsvs~g-------------Gdiiih~~~t~~~tt~f~~~sg------------qsvRll~ys~sk 176 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSDG-------------GDIIIHGTKTKQKTTTFTIDSG------------QSVRLLRYSPSK 176 (673)
T ss_pred ceeEEEEecCCcceeEEeccC-------------CcEEEEecccCccccceecCCC------------CeEEEeeccccc
Confidence 444555555566777777632 37777777644322 2222111 123567888887
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE--EeecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI--LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~--l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
+.++-. ++..+.+.+||. +|..+.- ...+.....++.|||-...|+.+...+ .+|+++|.
T Consensus 177 r~lL~~------------asd~G~VtlwDv---~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D---kki~~yD~ 238 (673)
T KOG4378|consen 177 RFLLSI------------ASDKGAVTLWDV---QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD---KKINIYDI 238 (673)
T ss_pred ceeeEe------------eccCCeEEEEec---cCCCcccchhhhccCCcCcceecCCccceEEEeccc---ceEEEeec
Confidence 766654 144668899996 5544432 345566678899999988877765444 37888887
Q ss_pred CCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.......+...+.+... +.|+++|.+|+...
T Consensus 239 ~s~~s~~~l~y~~Plst---------vaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 239 RSQASTDRLTYSHPLST---------VAFSECGTYLCAGN 269 (673)
T ss_pred ccccccceeeecCCcce---------eeecCCceEEEeec
Confidence 76433333333333332 78999999888775
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0054 Score=59.65 Aligned_cols=200 Identities=13% Similarity=0.153 Sum_probs=120.9
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
+.+..+.+.-||++.+....++ .+.+|+.-.+ -++....+. ..+...+-+.|.
T Consensus 18 gaV~avryN~dGnY~ltcGsdr-------------tvrLWNp~rg~liktYsghG-------------~EVlD~~~s~Dn 71 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDR-------------TVRLWNPLRGALIKTYSGHG-------------HEVLDAALSSDN 71 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCc-------------eEEeecccccceeeeecCCC-------------ceeeeccccccc
Confidence 4566677888999987666443 8999988644 344433321 223456677777
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
..++-- ++...+++||+ .+|...+++-.+.+.++.+.|..+...++..+.+.. .++|--....
T Consensus 72 skf~s~-------------GgDk~v~vwDV--~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s--~r~wDCRS~s 134 (307)
T KOG0316|consen 72 SKFASC-------------GGDKAVQVWDV--NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSS--VRLWDCRSRS 134 (307)
T ss_pred cccccC-------------CCCceEEEEEc--ccCeeeeecccccceeeEEEecCcceEEEeccccce--eEEEEcccCC
Confidence 665543 45668899997 556566778888899999999988887766655443 3666554444
Q ss_pred CCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEecc
Q 002209 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570 (953)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~ 570 (953)
.+|.++.+.....+. +.--.+..|+..+.++ .+..||+..|...-
T Consensus 135 --~ePiQildea~D~V~--------Si~v~~heIvaGS~DG---------------------tvRtydiR~G~l~s---- 179 (307)
T KOG0316|consen 135 --FEPIQILDEAKDGVS--------SIDVAEHEIVAGSVDG---------------------TVRTYDIRKGTLSS---- 179 (307)
T ss_pred --CCccchhhhhcCcee--------EEEecccEEEeeccCC---------------------cEEEEEeecceeeh----
Confidence 577777665433321 1222233333333211 27777876553221
Q ss_pred CcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002209 571 DKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (953)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~ 622 (953)
.|+.... ...+||+|++-.+...-. ..+.++|-++|+..
T Consensus 180 ---Dy~g~pi------t~vs~s~d~nc~La~~l~----stlrLlDk~tGklL 218 (307)
T KOG0316|consen 180 ---DYFGHPI------TSVSFSKDGNCSLASSLD----STLRLLDKETGKLL 218 (307)
T ss_pred ---hhcCCcc------eeEEecCCCCEEEEeecc----ceeeecccchhHHH
Confidence 1222111 225789999977765443 34888888888653
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.013 Score=62.57 Aligned_cols=229 Identities=10% Similarity=0.230 Sum_probs=129.0
Q ss_pred eceEEEEccCCCCCCce-------eeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc-----
Q 002209 163 TGIGIHQLFPDGKLGQE-------IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK----- 230 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~-------~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~----- 230 (953)
++++|||.+........ .+|.++.. ......|++.-.-.+.+.. .+....+|-+...+.+
T Consensus 147 ~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~--eg~glsWn~~~~g~Lls~~------~d~~i~lwdi~~~~~~~~~~~ 218 (422)
T KOG0264|consen 147 GDVYVFDYTKHPSKPKASGECRPDLRLKGHEK--EGYGLSWNRQQEGTLLSGS------DDHTICLWDINAESKEDKVVD 218 (422)
T ss_pred CCEEEEEeccCCCcccccccCCCceEEEeecc--cccccccccccceeEeecc------CCCcEEEEeccccccCCcccc
Confidence 57899998654322221 15555543 2466899986554443321 3344455555443332
Q ss_pred eeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhh
Q 002209 231 ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDY 310 (953)
Q Consensus 231 ~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 310 (953)
++.++.... ..++.++|.+-...+|.+..
T Consensus 219 p~~~~~~h~----~~VeDV~~h~~h~~lF~sv~----------------------------------------------- 247 (422)
T KOG0264|consen 219 PKTIFSGHE----DVVEDVAWHPLHEDLFGSVG----------------------------------------------- 247 (422)
T ss_pred ceEEeecCC----cceehhhccccchhhheeec-----------------------------------------------
Confidence 122222222 23778899987776665411
Q ss_pred hccceEEEEEc-CC--ceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCC
Q 002209 311 YATTQLVLVSL-DG--TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP 385 (953)
Q Consensus 311 ~~~~~l~~~~~-~g--~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~ 385 (953)
..+.|.+.|+ ++ +....... +.+..++|+|=+.+|+.+.. ..+.|.+||+..=.. .+.
T Consensus 248 -dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S------------~D~tV~LwDlRnL~~-~lh--- 310 (422)
T KOG0264|consen 248 -DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGS------------ADKTVALWDLRNLNK-PLH--- 310 (422)
T ss_pred -CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEecc------------CCCcEEEeechhccc-Cce---
Confidence 2245667776 43 22222222 67788999997777766652 134899999973221 111
Q ss_pred CcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCC---------CCCCCceEEe---e
Q 002209 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEP---------VQGEGPEILH---K 453 (953)
Q Consensus 386 ~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~---------~~g~~~~~l~---~ 453 (953)
.+.+....+..+.|||+-..++-.. +....+.+||+.. ++.+.+..|. +
T Consensus 311 -------~~e~H~dev~~V~WSPh~etvLASS------------g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG 371 (422)
T KOG0264|consen 311 -------TFEGHEDEVFQVEWSPHNETVLASS------------GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG 371 (422)
T ss_pred -------eccCCCcceEEEEeCCCCCceeEec------------ccCCcEEEEeccccccccChhhhccCCcceeEEecC
Confidence 2223445567899999998876651 2345677888621 1112233343 3
Q ss_pred cccccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 454 LDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 454 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
+...+..+.|.|.--+++.+...++. .+||.+.
T Consensus 372 H~~kV~DfsWnp~ePW~I~SvaeDN~-LqIW~~s 404 (422)
T KOG0264|consen 372 HTAKVSDFSWNPNEPWTIASVAEDNI-LQIWQMA 404 (422)
T ss_pred cccccccccCCCCCCeEEEEecCCce-EEEeecc
Confidence 34456778999999887776655532 4677654
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0077 Score=68.86 Aligned_cols=83 Identities=14% Similarity=0.154 Sum_probs=53.3
Q ss_pred CCeEEEEecCCCCCCC-ceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCC
Q 002209 432 RDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510 (953)
Q Consensus 432 ~~~l~~~d~~~~~g~~-~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 510 (953)
.-.|.++|. ...+ .+.+..+...++.+.||||||+|+.++.+... ++|.+ -++..--..+++.+...
T Consensus 555 df~I~vvD~---~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tI--r~wDl--pt~~lID~~~vd~~~~s----- 622 (910)
T KOG1539|consen 555 DFSIRVVDV---VTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTI--RTWDL--PTGTLIDGLLVDSPCTS----- 622 (910)
T ss_pred ceeEEEEEc---hhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcE--EEEec--cCcceeeeEecCCccee-----
Confidence 346788885 2222 34455677788899999999999999876533 55544 44311112223333222
Q ss_pred CCCCeEeccCCCEEEEEeee
Q 002209 511 GSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 511 ~~p~~~~SpDG~~l~~~~~~ 530 (953)
++|||.|.+|+....+
T Consensus 623 ----ls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 623 ----LSFSPNGDFLATVHVD 638 (910)
T ss_pred ----eEECCCCCEEEEEEec
Confidence 8899999999988754
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.13 Score=59.68 Aligned_cols=249 Identities=14% Similarity=0.177 Sum_probs=133.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCC-CC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DG 188 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~-~~ 188 (953)
++-.++|-|-.-||+.+-.. +.|.+||-.- | +.|..+. +.
T Consensus 11 RvKglsFHP~rPwILtslHs---------------------------------G~IQlWDYRM-~-----tli~rFdeHd 51 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHS---------------------------------GVIQLWDYRM-G-----TLIDRFDEHD 51 (1202)
T ss_pred cccceecCCCCCEEEEeecC---------------------------------ceeeeehhhh-h-----hHHhhhhccC
Confidence 56678899988888877653 3567777632 1 1222122 33
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCcee-ecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
+.++...|.|++-. |++ +.....|-+|+.+..... .|..+-+. +..+.|.+.=-+|+.++
T Consensus 52 GpVRgv~FH~~qpl--FVS-------GGDDykIkVWnYk~rrclftL~GHlDY-----VRt~~FHheyPWIlSAS----- 112 (1202)
T KOG0292|consen 52 GPVRGVDFHPTQPL--FVS-------GGDDYKIKVWNYKTRRCLFTLLGHLDY-----VRTVFFHHEYPWILSAS----- 112 (1202)
T ss_pred CccceeeecCCCCe--EEe-------cCCccEEEEEecccceehhhhccccce-----eEEeeccCCCceEEEcc-----
Confidence 47889999998763 544 222455555555443321 22222221 55666776666776541
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC-CcccccccCCCCc
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEK 344 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDG~ 344 (953)
.| ..|.+++- ++ ....++.. -.+....|.|-..
T Consensus 113 -----------------------------------DD---------QTIrIWNwqsr~~iavltGHnHYVMcAqFhptED 148 (1202)
T KOG0292|consen 113 -----------------------------------DD---------QTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED 148 (1202)
T ss_pred -----------------------------------CC---------CeEEEEeccCCceEEEEecCceEEEeeccCCccc
Confidence 11 23444454 55 34555555 6778889999888
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC----------C--c-----cccccccCccceeec
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI----------P--I-----AFNSVRKGMRSINWR 407 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~----------p--~-----~~~~~~~~~~~~~ws 407 (953)
.|+..+.+ +.|.+||+.|-..+........+.+ + . -..++.-|+.-.+|.
T Consensus 149 lIVSaSLD-------------QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh 215 (1202)
T KOG0292|consen 149 LIVSASLD-------------QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH 215 (1202)
T ss_pred eEEEeccc-------------ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec
Confidence 88877744 4999999987544443332111100 0 0 112233333445555
Q ss_pred cCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCce--EEeecccccCCeeeccCCceEEEEEecccCceEEEE
Q 002209 408 SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE--ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (953)
Q Consensus 408 pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~--~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 485 (953)
|--..|+-. .| +..-.+|.+.. ...-+ ..-++-.+++++.|.|....|+..++++. .++|-
T Consensus 216 pTlpliVSG---~D--------DRqVKlWrmne----tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks--irVwD 278 (1202)
T KOG0292|consen 216 PTLPLIVSG---AD--------DRQVKLWRMNE----TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS--IRVWD 278 (1202)
T ss_pred CCcceEEec---CC--------cceeeEEEecc----ccceeehhhhcccCCcceEEecCccceeEecCCCcc--EEEEe
Confidence 533322211 11 11124555542 21111 12345667888999998887777665553 36665
Q ss_pred EcCCC
Q 002209 486 ISPGS 490 (953)
Q Consensus 486 ~d~~~ 490 (953)
++-.+
T Consensus 279 m~kRt 283 (1202)
T KOG0292|consen 279 MTKRT 283 (1202)
T ss_pred ccccc
Confidence 55433
|
|
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00037 Score=82.45 Aligned_cols=126 Identities=24% Similarity=0.260 Sum_probs=79.6
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCC-CCCCC---C
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT-PIIGE---G 727 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~-~~~G~---G 727 (953)
++..+|.|.....+ + +||+|++|||.+..+. ...+.... ....+..+..+|+.++|| |..|+ |
T Consensus 97 LylNV~tp~~~~~~--~-~pV~V~iHGG~~~~gs--------~~~~~~~~--~~~~~~~~~VVvVt~~YRLG~lGF~st~ 163 (545)
T KOG1516|consen 97 LYLNVYTPQGCSES--K-LPVMVYIHGGGFQFGS--------ASSFEIIS--PAYVLLLKDVVVVTINYRLGPLGFLSTG 163 (545)
T ss_pred ceEEEeccCCCccC--C-CCEEEEEeCCceeecc--------ccchhhcC--chhccccCCEEEEEecccceeceeeecC
Confidence 67788888752211 2 9999999998543322 11121111 122334567888886664 32332 2
Q ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccC
Q 002209 728 DEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGA 793 (953)
Q Consensus 728 ~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~ 793 (953)
.+..+ +...+.|+..|++|+.+. -.-|+++|.|+|||+||..+..+.... ..+|+.+|..+|.
T Consensus 164 d~~~~---gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 164 DSAAP---GNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred CCCCC---CcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 22222 334456999999999775 236899999999999999987776521 2478888888875
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.068 Score=53.91 Aligned_cols=232 Identities=16% Similarity=0.209 Sum_probs=123.1
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCC-----eEEEEEeeccccCCCCcceEEEEECCCCceee---cc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGK-----HLAFSIRIDAEDSSSSKLRVWVADVDTGKARP---LF 235 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~-----~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~---lt 235 (953)
.|.|..+..++ ++......+.....++...|.||.+ .||.+. .-.+||.++.+.++... |.
T Consensus 74 kvqiv~ld~~s--~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~---------D~LRlWri~~ee~~~~~~~~L~ 142 (364)
T KOG0290|consen 74 KVQIVQLDEDS--GELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS---------DFLRLWRIGDEESRVELQSVLN 142 (364)
T ss_pred eeEEEEEccCC--CceeccCCCCCCCCccceEecCCccccCcchhhccc---------CeEEEEeccCcCCceehhhhhc
Confidence 45565554333 3322222222223677889999985 344432 36788888865544322 22
Q ss_pred cCCCccccccccceEEe-cCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccc
Q 002209 236 QSPDIYLNAIFDNFVWV-NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATT 314 (953)
Q Consensus 236 ~~~~~~~~~~~~~~~ws-pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 314 (953)
...+..+.+.+.+|.|. -|-++|..++- | .+-
T Consensus 143 ~~kns~~~aPlTSFDWne~dp~~igtSSi----------------------------------------D-------TTC 175 (364)
T KOG0290|consen 143 NNKNSEFCAPLTSFDWNEVDPNLIGTSSI----------------------------------------D-------TTC 175 (364)
T ss_pred cCcccccCCcccccccccCCcceeEeecc----------------------------------------c-------CeE
Confidence 22333345557788897 44455554410 1 223
Q ss_pred eEEEEEc--CC--ceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 315 QLVLVSL--DG--TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 315 ~l~~~~~--~g--~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
.||-+.. .| +.+.|.....+..++|+.+|+.++.+.. ..+.+.++|+...+...+.-.+.....
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvg------------aDGSvRmFDLR~leHSTIIYE~p~~~~ 243 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVG------------ADGSVRMFDLRSLEHSTIIYEDPSPST 243 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEec------------CCCcEEEEEecccccceEEecCCCCCC
Confidence 3443332 22 4445555578889999998877655542 234788899876554443222111111
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceE
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l 470 (953)
|. -.++|++......-.. . -....|.++|+ ..-......|..+...+++++|.|-++.-
T Consensus 244 pL---------lRLswnkqDpnymATf-~----------~dS~~V~iLDi-R~P~tpva~L~~H~a~VNgIaWaPhS~~h 302 (364)
T KOG0290|consen 244 PL---------LRLSWNKQDPNYMATF-A----------MDSNKVVILDI-RVPCTPVARLRNHQASVNGIAWAPHSSSH 302 (364)
T ss_pred cc---------eeeccCcCCchHHhhh-h----------cCCceEEEEEe-cCCCcceehhhcCcccccceEecCCCCce
Confidence 11 2456665443221110 1 12345667775 12223344577888899999999998776
Q ss_pred EEEEecccCceEEEEEc
Q 002209 471 VYESWYKTRRTRTWVIS 487 (953)
Q Consensus 471 ~~~~~~~~~~~~l~~~d 487 (953)
+.+..++. +.-+|-++
T Consensus 303 ictaGDD~-qaliWDl~ 318 (364)
T KOG0290|consen 303 ICTAGDDC-QALIWDLQ 318 (364)
T ss_pred eeecCCcc-eEEEEecc
Confidence 65554442 22455444
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0064 Score=62.83 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=48.1
Q ss_pred HHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---
Q 002209 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--- 780 (953)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--- 780 (953)
.+..+...++.|..... .|.+.........+.++.+..+.+..... ..++.|+|||+||.+|..+|.+-
T Consensus 19 la~~l~~~~~~v~~i~~---~~~~~~~~~~~si~~la~~y~~~I~~~~~-----~gp~~L~G~S~Gg~lA~E~A~~Le~~ 90 (229)
T PF00975_consen 19 LARALPDDVIGVYGIEY---PGRGDDEPPPDSIEELASRYAEAIRARQP-----EGPYVLAGWSFGGILAFEMARQLEEA 90 (229)
T ss_dssp HHHHHTTTEEEEEEECS---TTSCTTSHEESSHHHHHHHHHHHHHHHTS-----SSSEEEEEETHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCeEEEEEEec---CCCCCCCCCCCCHHHHHHHHHHHhhhhCC-----CCCeeehccCccHHHHHHHHHHHHHh
Confidence 33333333477777444 34432323334456666665555433321 23899999999999999988642
Q ss_pred CCcccEEEEcccC
Q 002209 781 PHLFCCGIARSGA 793 (953)
Q Consensus 781 p~~~~a~v~~~~~ 793 (953)
...+..++++.+.
T Consensus 91 G~~v~~l~liD~~ 103 (229)
T PF00975_consen 91 GEEVSRLILIDSP 103 (229)
T ss_dssp T-SESEEEEESCS
T ss_pred hhccCceEEecCC
Confidence 2346777777643
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00065 Score=47.65 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=23.3
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~ 223 (953)
.....|.|||||++|+|++++. +.+..+||+
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~----~~g~~diy~ 39 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRN----DRGSFDIYV 39 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT------SSEEEEE
T ss_pred ccccCEEEecCCCEEEEEecCC----CCCCcCEEC
Confidence 4688999999999999998743 146788885
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.032 Score=63.66 Aligned_cols=86 Identities=17% Similarity=0.078 Sum_probs=64.0
Q ss_pred HHHHcCcEEEEcCCCCCCCCC----Chhh-----hhhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHH
Q 002209 707 LWLARGFAILGGPTTPIIGEG----DEEA-----NDRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANL 776 (953)
Q Consensus 707 ~la~~G~~V~~~~~~~~~G~G----~~~~-----~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~ 776 (953)
.-+++||+++.-|. |..+.. .++. -.+|....+.+...+.+.|.+. +...+++-...|.|-||-.++.+
T Consensus 54 ~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~ 132 (474)
T PF07519_consen 54 TALARGYATASTDS-GHQGSAGSDDASFGNNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMA 132 (474)
T ss_pred hhhhcCeEEEEecC-CCCCCcccccccccCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHH
Confidence 34689999999554 332221 1222 2355566677777777778776 33567899999999999999999
Q ss_pred HHhCCCcccEEEEcccC
Q 002209 777 LAHAPHLFCCGIARSGA 793 (953)
Q Consensus 777 a~~~p~~~~a~v~~~~~ 793 (953)
|-++|+.|.++++.+|.
T Consensus 133 AQryP~dfDGIlAgaPA 149 (474)
T PF07519_consen 133 AQRYPEDFDGILAGAPA 149 (474)
T ss_pred HHhChhhcCeEEeCCch
Confidence 99999999999999884
|
It also includes several bacterial homologues of unknown function. |
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.013 Score=62.93 Aligned_cols=142 Identities=12% Similarity=0.111 Sum_probs=89.6
Q ss_pred ceEEEEEc-CC-ceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCccc
Q 002209 314 TQLVLVSL-DG-TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAED 389 (953)
Q Consensus 314 ~~l~~~~~-~g-~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~ 389 (953)
+.|.+..+ ++ +.+.++.+ ..++-+.+||-.|+++.+..++ +.+.+||+.|..+..-... ...
T Consensus 143 Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~------------G~VtlwDv~g~sp~~~~~~--~Hs 208 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDK------------GAVTLWDVQGMSPIFHASE--AHS 208 (673)
T ss_pred CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccC------------CeEEEEeccCCCcccchhh--hcc
Confidence 45667777 55 34445444 4455788999999998887543 5899999997544321111 111
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCce
Q 002209 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (953)
Q Consensus 390 ~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~ 469 (953)
.| .+.+.|||-...|+..+ +-...|++||. .......-...+.....++|+++|.+
T Consensus 209 AP---------~~gicfspsne~l~vsV------------G~Dkki~~yD~---~s~~s~~~l~y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 209 AP---------CRGICFSPSNEALLVSV------------GYDKKINIYDI---RSQASTDRLTYSHPLSTVAFSECGTY 264 (673)
T ss_pred CC---------cCcceecCCccceEEEe------------cccceEEEeec---ccccccceeeecCCcceeeecCCceE
Confidence 12 25789999887665541 34558999995 22221111223455678999999999
Q ss_pred EEEEEecccCceEEEEEcCCCCCCCcEEe
Q 002209 470 LVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (953)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 498 (953)
|+.....+ +|+.+|+.+. ..|..+
T Consensus 265 L~aG~s~G----~~i~YD~R~~-k~Pv~v 288 (673)
T KOG4378|consen 265 LCAGNSKG----ELIAYDMRST-KAPVAV 288 (673)
T ss_pred EEeecCCc----eEEEEecccC-CCCceE
Confidence 98875433 8999998875 344443
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.027 Score=55.63 Aligned_cols=205 Identities=11% Similarity=0.098 Sum_probs=118.0
Q ss_pred cccceEecc--CCCeEEEEEeeccccCCCCcceEEEEECCCC-ceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 190 KLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-KARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 190 ~~~~~~wSP--DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g-~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
.-..+.||| +++ ||...... -+=.|...|++++++++ ..+.+-.... +.....++|++.-.-++++..
T Consensus 10 ~GysvqfSPf~~nr-LavAt~q~--yGl~G~G~L~ile~~~~~gi~e~~s~d~---~D~LfdV~Wse~~e~~~~~a~--- 80 (311)
T KOG0277|consen 10 HGYSVQFSPFVENR-LAVATAQH--YGLAGNGRLFILEVTDPKGIQECQSYDT---EDGLFDVAWSENHENQVIAAS--- 80 (311)
T ss_pred ccceeEecccccch-hheeehhh--cccccCceEEEEecCCCCCeEEEEeeec---ccceeEeeecCCCcceEEEEe---
Confidence 346678888 444 44433211 11246789999999643 3332222111 111558999977765554411
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc---CCceeEeCCC-CcccccccCCC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DGTVKEIGPP-AVYTSLDPSPD 342 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~---~g~~~~l~~~-~~~~~~~~SpD 342 (953)
+.+.|.++|+ .+....+-+. ..+.++.|++-
T Consensus 81 ---------------------------------------------GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 81 ---------------------------------------------GDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred ---------------------------------------------cCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence 3344555565 2222333333 67788999997
Q ss_pred CcEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002209 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 343 G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
-++++.++ .+.+.|.+|+.+.. .++. |++.+.-+...+|||--..+.-.
T Consensus 116 ~r~~~lts------------SWD~TiKLW~~~r~~Sv~T-------------f~gh~~~Iy~a~~sp~~~nlfas----- 165 (311)
T KOG0277|consen 116 RRRIFLTS------------SWDGTIKLWDPNRPNSVQT-------------FNGHNSCIYQAAFSPHIPNLFAS----- 165 (311)
T ss_pred cceeEEee------------ccCCceEeecCCCCcceEe-------------ecCCccEEEEEecCCCCCCeEEE-----
Confidence 77776665 24568999988732 2222 22333445678899876654332
Q ss_pred CCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
.++...+.+||+ ... |+...+..+...+-...|+.-...+++....+. -|+..|+..
T Consensus 166 -------~Sgd~~l~lwdv-r~~-gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~---~vr~wDir~ 222 (311)
T KOG0277|consen 166 -------ASGDGTLRLWDV-RSP-GKFMSIEAHNSEILCCDWSKYNHNVLATGGVDN---LVRGWDIRN 222 (311)
T ss_pred -------ccCCceEEEEEe-cCC-CceeEEEeccceeEeecccccCCcEEEecCCCc---eEEEEehhh
Confidence 155667777876 223 455456666666677889998888777764442 345555444
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.018 Score=58.95 Aligned_cols=116 Identities=14% Similarity=0.148 Sum_probs=71.5
Q ss_pred cccceEeccCCCe---EEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 190 KLNFVTWSQDGKH---LAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 190 ~~~~~~wSPDG~~---laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
.-...+|+=|-.. ++.+ +...+.|+++|+.+++...-....+.. +..+.+-|+.-.|+.+..
T Consensus 91 sfytcsw~yd~~~~~p~la~--------~G~~GvIrVid~~~~~~~~~~~ghG~s----INeik~~p~~~qlvls~S--- 155 (385)
T KOG1034|consen 91 SFYTCSWSYDSNTGNPFLAA--------GGYLGVIRVIDVVSGQCSKNYRGHGGS----INEIKFHPDRPQLVLSAS--- 155 (385)
T ss_pred ceEEEEEEecCCCCCeeEEe--------ecceeEEEEEecchhhhccceeccCcc----chhhhcCCCCCcEEEEec---
Confidence 3455678765442 2222 225789999999988764333222222 667888888865554411
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-----CcccccccC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-----AVYTSLDPS 340 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-----~~~~~~~~S 340 (953)
....|.+.++ ++.-..+..+ +.+-++.||
T Consensus 156 ---------------------------------------------kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 156 ---------------------------------------------KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred ---------------------------------------------CCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 1123445566 5554444432 556789999
Q ss_pred CCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE
Q 002209 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (953)
Q Consensus 341 pDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~ 378 (953)
+||.+|+....+. .|.+|++..++.
T Consensus 191 ~~gd~i~ScGmDh-------------slk~W~l~~~~f 215 (385)
T KOG1034|consen 191 LDGDRIASCGMDH-------------SLKLWRLNVKEF 215 (385)
T ss_pred CCCCeeeccCCcc-------------eEEEEecChhHH
Confidence 9999998776554 899999985443
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.003 Score=70.48 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=65.8
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
+..+.+||+|+.||..... ..... ..|++|+... -.+...|.+ +.-.
T Consensus 528 v~~l~~s~~gnliASaCKS-----------------------~~~eh-----AvI~lw~t~~---W~~~~~L~~--HsLT 574 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKS-----------------------SLKEH-----AVIRLWNTAN---WLQVQELEG--HSLT 574 (764)
T ss_pred EEEEEecCCCCEEeehhhh-----------------------CCccc-----eEEEEEeccc---hhhhheecc--cceE
Confidence 6678999999999987763 11111 3689998632 122223332 1127
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
+...+|||||++|+-+++ +-...||-.--+-....+... ...+..++-.+.|+||++.++.+
T Consensus 575 VT~l~FSpdg~~LLsvsR-------DRt~sl~~~~~~~~~e~~fa~--~k~HtRIIWdcsW~pde~~FaTa 636 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSR-------DRTVSLYEVQEDIKDEFRFAC--LKAHTRIIWDCSWSPDEKYFATA 636 (764)
T ss_pred EEEEEECCCCcEEEEeec-------CceEEeeeeecccchhhhhcc--ccccceEEEEcccCcccceeEEe
Confidence 899999999999998774 335566654211111111111 11233456789999999986655
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0098 Score=59.75 Aligned_cols=155 Identities=14% Similarity=0.116 Sum_probs=95.1
Q ss_pred cceeeeeceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCC-eEEEEEeeccccCCCCcceEEEEECCCCceeecc
Q 002209 157 SRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGK-HLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLF 235 (953)
Q Consensus 157 ~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~-~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt 235 (953)
...+|+..|.|||.++ .+..-. +.-.+.+..-+|||=.. +-+... +....++-+.|+.+|......
T Consensus 118 tssSFDhtlKVWDtnT----lQ~a~~--F~me~~VYshamSp~a~sHcLiA~-------gtr~~~VrLCDi~SGs~sH~L 184 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNT----LQEAVD--FKMEGKVYSHAMSPMAMSHCLIAA-------GTRDVQVRLCDIASGSFSHTL 184 (397)
T ss_pred ecccccceEEEeeccc----ceeeEE--eecCceeehhhcChhhhcceEEEE-------ecCCCcEEEEeccCCcceeee
Confidence 3445667899999854 332211 22224677788999554 333333 223678999999999877665
Q ss_pred cCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccce
Q 002209 236 QSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQ 315 (953)
Q Consensus 236 ~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 315 (953)
...... +-.+.|||-..++.++....+. .++|+.. . ..+-
T Consensus 185 sGHr~~----vlaV~Wsp~~e~vLatgsaDg~-----------irlWDiR--------r-----------------asgc 224 (397)
T KOG4283|consen 185 SGHRDG----VLAVEWSPSSEWVLATGSADGA-----------IRLWDIR--------R-----------------ASGC 224 (397)
T ss_pred ccccCc----eEEEEeccCceeEEEecCCCce-----------EEEEEee--------c-----------------ccce
Confidence 544433 6689999999998877221111 1122111 0 2244
Q ss_pred EEEEEc-CCceeEeC--CC---CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce
Q 002209 316 LVLVSL-DGTVKEIG--PP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF 377 (953)
Q Consensus 316 l~~~~~-~g~~~~l~--~~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~ 377 (953)
+..+|. +++.-++. +. +-+.+.+|+.||++++....++ .+.+|+...++
T Consensus 225 f~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~-------------r~r~wn~~~G~ 279 (397)
T KOG4283|consen 225 FRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD-------------RIRVWNMESGR 279 (397)
T ss_pred eEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc-------------ceEEeecccCc
Confidence 556676 54322222 11 6677899999999998776443 78888887554
|
|
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0082 Score=61.31 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCC---CcccEEEEcccC
Q 002209 740 VACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGA 793 (953)
Q Consensus 740 ~~D~~~~~~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~ 793 (953)
.+-+..+++++.+.. ...+++|.|+||||||.++-.++...+ +.++.+|..+.+
T Consensus 63 ~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tP 122 (225)
T PF07819_consen 63 AEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTP 122 (225)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCC
Confidence 344455556655443 345789999999999999888876543 368888877654
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0032 Score=71.71 Aligned_cols=142 Identities=13% Similarity=0.092 Sum_probs=83.2
Q ss_pred CcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccc---hHHHHHHHcCcEEEEcCCCCCCC
Q 002209 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS---TSVLLWLARGFAILGGPTTPIIG 725 (953)
Q Consensus 649 g~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~la~~G~~V~~~~~~~~~G 725 (953)
+..+..|++...+ ++. ..|+|||++|||..+.-......-||......+. .....|.+.+..|+. |-.-..|
T Consensus 60 ~~~lFyw~~~s~~-~~~---~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~~~l~i-DqP~G~G 134 (462)
T PTZ00472 60 DKHYFYWAFGPRN-GNP---EAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEAYVIYV-DQPAGVG 134 (462)
T ss_pred CceEEEEEEEcCC-CCC---CCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccccCeEEE-eCCCCcC
Confidence 5578888886553 222 3799999999998765443333334433322110 011235555555554 2211134
Q ss_pred CCChhhh--hhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhC----------CCcccEEEEccc
Q 002209 726 EGDEEAN--DRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHA----------PHLFCCGIARSG 792 (953)
Q Consensus 726 ~G~~~~~--~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~----------p~~~~a~v~~~~ 792 (953)
++..... .........|+.++++...++ +.....++.|+|+||||..+..++.+- .=.++++++..|
T Consensus 135 ~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg 214 (462)
T PTZ00472 135 FSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNG 214 (462)
T ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecc
Confidence 3332211 122356778888888766543 444567999999999999887777541 013788888888
Q ss_pred CCC
Q 002209 793 AYN 795 (953)
Q Consensus 793 ~~d 795 (953)
..+
T Consensus 215 ~~d 217 (462)
T PTZ00472 215 LTD 217 (462)
T ss_pred ccC
Confidence 765
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.057 Score=56.70 Aligned_cols=123 Identities=19% Similarity=0.251 Sum_probs=76.5
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
+.+-.++|+|=...++.+..+ ...|-+|.+- ++..+.++. +.. ...++...+.-++|.|--
T Consensus 82 ~~vLDi~w~PfnD~vIASgSe------------D~~v~vW~IPe~~l~~~lte-pvv-----~L~gH~rrVg~V~wHPtA 143 (472)
T KOG0303|consen 82 APVLDIDWCPFNDCVIASGSE------------DTKVMVWQIPENGLTRDLTE-PVV-----ELYGHQRRVGLVQWHPTA 143 (472)
T ss_pred ccccccccCccCCceeecCCC------------CceEEEEECCCcccccCccc-ceE-----EEeecceeEEEEeecccc
Confidence 667788999955544444322 2378888874 333333331 110 112333445568899977
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
..+++. .+..+.+.+|++ .+|.....|. +..-+.++.|+.||..|+.+..++ ++.++|..+
T Consensus 144 ~NVLls------------ag~Dn~v~iWnv--~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDK----kvRv~dpr~ 204 (472)
T KOG0303|consen 144 PNVLLS------------AGSDNTVSIWNV--GTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDK----KVRVIDPRR 204 (472)
T ss_pred hhhHhh------------ccCCceEEEEec--cCCceeeecC-CCCeEEEEEeccCCceeeeecccc----eeEEEcCCC
Confidence 665554 245678999997 2333333343 666678899999999999887554 677888877
Q ss_pred C
Q 002209 491 K 491 (953)
Q Consensus 491 ~ 491 (953)
+
T Consensus 205 ~ 205 (472)
T KOG0303|consen 205 G 205 (472)
T ss_pred C
Confidence 5
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.13 Score=52.37 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=27.7
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeec
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL 234 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 234 (953)
.-+..+||||+..|||+.. ...|.+.|+.|.+...+
T Consensus 45 QWRkl~WSpD~tlLa~a~S---------~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAES---------TGTIRVFDLMGSELFVI 80 (282)
T ss_pred hheEEEECCCCcEEEEEcC---------CCeEEEEecccceeEEc
Confidence 4567899999999999663 66888889888665443
|
|
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.003 Score=72.17 Aligned_cols=88 Identities=23% Similarity=0.115 Sum_probs=60.0
Q ss_pred HHHHHH-cCcEEEEcCCCCCCCCCChhhhh---------hhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHH
Q 002209 705 VLLWLA-RGFAILGGPTTPIIGEGDEEAND---------RFVEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAFMT 773 (953)
Q Consensus 705 ~~~la~-~G~~V~~~~~~~~~G~G~~~~~~---------~~~~~~~~D~~~~~~~l~~~~-~~d~~~i~l~G~S~GG~~a 773 (953)
...||+ .|-.|+.. -.+=||.|..-. -..++.+.|+...++++..+. ..+..+++++|.||||.+|
T Consensus 51 ~~~lA~~~~a~~v~l---EHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~La 127 (434)
T PF05577_consen 51 MWELAKEFGALVVAL---EHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALA 127 (434)
T ss_dssp HHHHHHHHTEEEEEE-----TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHH
T ss_pred HHHHHHHcCCcEEEe---ehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHH
Confidence 344564 46666663 334566664211 126788999999999998653 3455699999999999999
Q ss_pred HHHHHhCCCcccEEEEcccCCC
Q 002209 774 ANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 774 ~~~a~~~p~~~~a~v~~~~~~d 795 (953)
+|+-.++|++|.|+++-++++.
T Consensus 128 aw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 128 AWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHHHHH-TTT-SEEEEET--CC
T ss_pred HHHHhhCCCeeEEEEeccceee
Confidence 9999999999999999888754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0093 Score=67.63 Aligned_cols=181 Identities=13% Similarity=0.171 Sum_probs=107.9
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCC-cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~-~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (953)
+.|.+||+.-. +..+.++.+.+.. .+..+.|++---.|+.+.. .++ -|-.+|+...+-...+.....
T Consensus 110 G~i~vWdlnk~---~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGS------QDg--~vK~~DlR~~~S~~t~~~nSE- 177 (839)
T KOG0269|consen 110 GVISVWDLNKS---IRNKLLTVFNEHERSANKLDFHSTEPNILISGS------QDG--TVKCWDLRSKKSKSTFRSNSE- 177 (839)
T ss_pred CcEEEEecCcc---ccchhhhHhhhhccceeeeeeccCCccEEEecC------CCc--eEEEEeeecccccccccccch-
Confidence 57899999432 2234444344333 7888999988878887553 334 444455555444444433222
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 321 (953)
.+..++|+|.-...|+++. ..+.|.++|+
T Consensus 178 ---SiRDV~fsp~~~~~F~s~~------------------------------------------------dsG~lqlWDl 206 (839)
T KOG0269|consen 178 ---SIRDVKFSPGYGNKFASIH------------------------------------------------DSGYLQLWDL 206 (839)
T ss_pred ---hhhceeeccCCCceEEEec------------------------------------------------CCceEEEeec
Confidence 2779999976554444411 1233445555
Q ss_pred ---CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCcccccc
Q 002209 322 ---DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV 397 (953)
Q Consensus 322 ---~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~ 397 (953)
..-.++++.. +.+.-..|+|++.+||....+ +.|.+|+..+...+.+...... .|
T Consensus 207 Rqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD-------------K~vkiWd~t~~~~~~~~tInTi--ap------ 265 (839)
T KOG0269|consen 207 RQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD-------------KMVKIWDMTDSRAKPKHTINTI--AP------ 265 (839)
T ss_pred cCchhHHHHhhcccCceEEEeecCCCceeeecCCC-------------ccEEEEeccCCCccceeEEeec--ce------
Confidence 3334555555 778889999999999977633 3899999987665544332111 11
Q ss_pred ccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEec
Q 002209 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQA 440 (953)
Q Consensus 398 ~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~ 440 (953)
+..+.|.|+-+..+-. ........|++||+
T Consensus 266 ---v~rVkWRP~~~~hLAt----------csmv~dtsV~VWDv 295 (839)
T KOG0269|consen 266 ---VGRVKWRPARSYHLAT----------CSMVVDTSVHVWDV 295 (839)
T ss_pred ---eeeeeeccCccchhhh----------hhccccceEEEEee
Confidence 2458899998744332 11123457888886
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.17 Score=58.81 Aligned_cols=102 Identities=17% Similarity=0.144 Sum_probs=67.3
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccC-CCCCCceeeeecCCCCC
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP-DGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~-~g~~~~~~~l~~~~~~~ 189 (953)
....++||.|+.+|..-.+ ++|.+|.--. ++..-..+.+.- +..
T Consensus 208 ~t~~~~spn~~~~Aa~d~d---------------------------------GrI~vw~d~~~~~~~~t~t~lHW--H~~ 252 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSD---------------------------------GRILVWRDFGSSDDSETCTLLHW--HHD 252 (792)
T ss_pred ceeEEeccccceEEEeccC---------------------------------CcEEEEeccccccccccceEEEe--ccc
Confidence 4457889999988877654 2456764311 122233455543 224
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
.+...+||+||..|+- +.....|.+|.+++++.+-|-. +.+.+..+.|||||......
T Consensus 253 ~V~~L~fS~~G~~LlS---------GG~E~VLv~Wq~~T~~kqfLPR-----Lgs~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLS---------GGREGVLVLWQLETGKKQFLPR-----LGSPILHIVVSPDSDLYSLV 310 (792)
T ss_pred ccceeEEecCCceEee---------cccceEEEEEeecCCCcccccc-----cCCeeEEEEEcCCCCeEEEE
Confidence 6889999999999887 3336677788888888444422 33447799999999876655
|
|
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.073 Score=57.26 Aligned_cols=213 Identities=20% Similarity=0.188 Sum_probs=122.3
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
|..++. .++.++ -.||+|... +.+.-+||++||.... -.+...-......|...|+..+...
T Consensus 63 e~~~L~-~~~~~f-laL~~~~~~----~~~~G~vIilp~~g~~------------~d~p~~i~~LR~~L~~~GW~Tlsit 124 (310)
T PF12048_consen 63 EVQWLQ-AGEERF-LALWRPANS----AKPQGAVIILPDWGEH------------PDWPGLIAPLRRELPDHGWATLSIT 124 (310)
T ss_pred hcEEee-cCCEEE-EEEEecccC----CCCceEEEEecCCCCC------------CCcHhHHHHHHHHhhhcCceEEEec
Confidence 334444 344444 457777642 2246789999983110 0111112234556888999999832
Q ss_pred CCCCC---------------CCCCh-----------------hhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeC
Q 002209 720 TTPII---------------GEGDE-----------------EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHS 767 (953)
Q Consensus 720 ~~~~~---------------G~G~~-----------------~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S 767 (953)
..+-. .-+.. .....+......-+.+++.++.+++. .+|.|+||.
T Consensus 125 ~P~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G 201 (310)
T PF12048_consen 125 LPDPAPPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGG---KNIVLIGHG 201 (310)
T ss_pred CCCcccccCCccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeC
Confidence 22200 00100 01112344556667777788877752 469999999
Q ss_pred hHHHHHHHHHHhCCC-cccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCC
Q 002209 768 YGAFMTANLLAHAPH-LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGT 846 (953)
Q Consensus 768 ~GG~~a~~~a~~~p~-~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~ 846 (953)
.|+++++.++...+. .+.+.|.+++...... ........+.+++.|+|=|++.. ....
T Consensus 202 ~gA~~~~~~la~~~~~~~daLV~I~a~~p~~~-------------------~n~~l~~~la~l~iPvLDi~~~~-~~~~- 260 (310)
T PF12048_consen 202 TGAGWAARYLAEKPPPMPDALVLINAYWPQPD-------------------RNPALAEQLAQLKIPVLDIYSAD-NPAS- 260 (310)
T ss_pred hhHHHHHHHHhcCCCcccCeEEEEeCCCCcch-------------------hhhhHHHHhhccCCCEEEEecCC-ChHH-
Confidence 999999999998763 4889999887422100 00112234567889999999887 3321
Q ss_pred chHHHHHHHHHHHhC-CCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 847 LTMQSDRFFNALKGH-GALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 847 ~~~~~~~~~~~l~~~-g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
...+.+-....+.+ ....+-+.+++..|..... ...+.++|..||.++
T Consensus 261 -~~~a~~R~~~a~r~~~~~YrQ~~L~~~~~~~~~~--~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 261 -QQTAKQRKQAAKRNKKPDYRQIQLPGLPDNPSGW--QEQLLRRIRGWLKRH 309 (310)
T ss_pred -HHHHHHHHHHHHhccCCCceeEecCCCCCChhhH--HHHHHHHHHHHHHhh
Confidence 23333322333333 2446666777777755322 233888999999875
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0023 Score=66.05 Aligned_cols=161 Identities=10% Similarity=0.120 Sum_probs=97.3
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCC-cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~-~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+|-|||..- ..++..+.-|. .+....++|--..|+-+.. .+..|+++|+..+.+.+-....-.
T Consensus 168 ~i~IWD~~R------~~Pv~smswG~Dti~svkfNpvETsILas~~--------sDrsIvLyD~R~~~Pl~KVi~~mR-- 231 (433)
T KOG0268|consen 168 QIDIWDEQR------DNPVSSMSWGADSISSVKFNPVETSILASCA--------SDRSIVLYDLRQASPLKKVILTMR-- 231 (433)
T ss_pred eeeeccccc------CCccceeecCCCceeEEecCCCcchheeeec--------cCCceEEEecccCCccceeeeecc--
Confidence 578888732 23333333333 5788899998877776542 366899999887765332111111
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
...++|+|.+ ..|.+ .+ ....||.+|.
T Consensus 232 ---TN~IswnPea-fnF~~--------------------------------------a~----------ED~nlY~~DmR 259 (433)
T KOG0268|consen 232 ---TNTICWNPEA-FNFVA--------------------------------------AN----------EDHNLYTYDMR 259 (433)
T ss_pred ---ccceecCccc-cceee--------------------------------------cc----------ccccceehhhh
Confidence 3478999933 33333 11 2245777776
Q ss_pred C-CceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccc
Q 002209 322 D-GTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVR 398 (953)
Q Consensus 322 ~-g~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~ 398 (953)
. ..+..+..+ ..+.+++|||-|+-++..+.+ ..|.++.++.+.-+.+....- .
T Consensus 260 ~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD-------------ksIRIf~~~~~~SRdiYhtkR-----------M 315 (433)
T KOG0268|consen 260 NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD-------------KSIRIFPVNHGHSRDIYHTKR-----------M 315 (433)
T ss_pred hhcccchhhcccceeEEEeccCCCcchhcccccc-------------ceEEEeecCCCcchhhhhHhh-----------h
Confidence 1 222233322 556789999999999877744 489999888665554443210 0
Q ss_pred cCccceeeccCCCCceEE
Q 002209 399 KGMRSINWRSDKPSTLYW 416 (953)
Q Consensus 399 ~~~~~~~wspDg~~i~~~ 416 (953)
..+..+.||.|.+.|+-.
T Consensus 316 q~V~~Vk~S~Dskyi~SG 333 (433)
T KOG0268|consen 316 QHVFCVKYSMDSKYIISG 333 (433)
T ss_pred heeeEEEEeccccEEEec
Confidence 123568999999966544
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.011 Score=65.75 Aligned_cols=133 Identities=11% Similarity=0.029 Sum_probs=76.3
Q ss_pred eeEeCCC-Cccccccc-CCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCcc
Q 002209 325 VKEIGPP-AVYTSLDP-SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMR 402 (953)
Q Consensus 325 ~~~l~~~-~~~~~~~~-SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~ 402 (953)
...|... +++..++. -++...+|.. ++.++|++||++.+..+.+......... -...+...+++
T Consensus 110 ~stir~H~DYVkcla~~ak~~~lvaSg-------------GLD~~IflWDin~~~~~l~~s~n~~t~~-sl~sG~k~siY 175 (735)
T KOG0308|consen 110 MSTIRTHKDYVKCLAYIAKNNELVASG-------------GLDRKIFLWDINTGTATLVASFNNVTVN-SLGSGPKDSIY 175 (735)
T ss_pred HhhhhcccchheeeeecccCceeEEec-------------CCCccEEEEEccCcchhhhhhccccccc-cCCCCCcccee
Confidence 3344444 66666666 4454443333 3456999999996543222211100000 00002223445
Q ss_pred ceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceE
Q 002209 403 SINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTR 482 (953)
Q Consensus 403 ~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 482 (953)
+++-.+.|.-|+-. +-...|.+|| |....+.-.|.++..++..+..++||++++.++.+++. +
T Consensus 176 SLA~N~t~t~ivsG-------------gtek~lr~wD--prt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtI--r 238 (735)
T KOG0308|consen 176 SLAMNQTGTIIVSG-------------GTEKDLRLWD--PRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTI--R 238 (735)
T ss_pred eeecCCcceEEEec-------------CcccceEEec--cccccceeeeeccccceEEEEEcCCCCeEeecCCCceE--E
Confidence 55555655322211 3345678888 56666777787888888889999999999988776644 7
Q ss_pred EEEEcC
Q 002209 483 TWVISP 488 (953)
Q Consensus 483 l~~~d~ 488 (953)
||-+..
T Consensus 239 lWdLgq 244 (735)
T KOG0308|consen 239 LWDLGQ 244 (735)
T ss_pred eeeccc
Confidence 776643
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.094 Score=51.68 Aligned_cols=69 Identities=10% Similarity=0.104 Sum_probs=40.6
Q ss_pred EeecccccCCeeeccCC----ceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEE
Q 002209 451 LHKLDLRYGGISWCDDS----LALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIA 526 (953)
Q Consensus 451 l~~~~~~~~~~~~SpDg----~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~ 526 (953)
|..+..-++.++|+|.- .+|+..+.++ +--||..+.+.+.-+.+.+.+ ....++. ++||.-|..|+.
T Consensus 203 l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg--~viIwt~~~e~e~wk~tll~~-f~~~~w~------vSWS~sGn~LaV 273 (299)
T KOG1332|consen 203 LEGHKDWVRDVAWAPSVGLPKSTIASCSQDG--TVIIWTKDEEYEPWKKTLLEE-FPDVVWR------VSWSLSGNILAV 273 (299)
T ss_pred hhhcchhhhhhhhccccCCCceeeEEecCCC--cEEEEEecCccCccccccccc-CCcceEE------EEEeccccEEEE
Confidence 66666677889999973 2344444433 346788775543222233322 2222333 889999998887
Q ss_pred Ee
Q 002209 527 KI 528 (953)
Q Consensus 527 ~~ 528 (953)
..
T Consensus 274 s~ 275 (299)
T KOG1332|consen 274 SG 275 (299)
T ss_pred ec
Confidence 64
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.097 Score=56.10 Aligned_cols=226 Identities=15% Similarity=0.164 Sum_probs=124.3
Q ss_pred cCCCCEEEEEecC--CCCCccccccccceeceEEec-------CCCCCC-cceeeeeceEEEEccCCCCCC---cee-ee
Q 002209 117 SPQRDKILFLKRR--ALPPLEELARPEEKLAGLRID-------GKCNTR-SRMSFYTGIGIHQLFPDGKLG---QEI-EI 182 (953)
Q Consensus 117 SPDG~~la~~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~i~i~~~~~~g~~~---~~~-~l 182 (953)
+|.|.-++|-... +.+....-++|+..+.+..-. ....+. ...+..+.|.+||+...+... .++ -+
T Consensus 144 t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~ 223 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIF 223 (422)
T ss_pred CCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEe
Confidence 7788878876554 222222245677666554431 111111 112223578999996544311 112 22
Q ss_pred ecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCC--ceeecccCCCccccccccceEEecCCeEEEE
Q 002209 183 QGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSPDIYLNAIFDNFVWVNNSTLLVC 260 (953)
Q Consensus 183 ~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~ 260 (953)
.+ +...+...+|.|-.+.|+-... ....|.++|+.++ ++........ +.+..++|.|=+..|+.
T Consensus 224 ~~--h~~~VeDV~~h~~h~~lF~sv~--------dd~~L~iwD~R~~~~~~~~~~~ah~----~~vn~~~fnp~~~~ilA 289 (422)
T KOG0264|consen 224 SG--HEDVVEDVAWHPLHEDLFGSVG--------DDGKLMIWDTRSNTSKPSHSVKAHS----AEVNCVAFNPFNEFILA 289 (422)
T ss_pred ec--CCcceehhhccccchhhheeec--------CCCeEEEEEcCCCCCCCcccccccC----CceeEEEeCCCCCceEE
Confidence 22 2247888999996665543321 3667888888853 3333222222 22678899987776664
Q ss_pred EecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc---CCceeEeCCC-Ccccc
Q 002209 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DGTVKEIGPP-AVYTS 336 (953)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~---~g~~~~l~~~-~~~~~ 336 (953)
+.. ..+.+.++|+ ...+..+... ..+..
T Consensus 290 T~S------------------------------------------------~D~tV~LwDlRnL~~~lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 290 TGS------------------------------------------------ADKTVALWDLRNLNKPLHTFEGHEDEVFQ 321 (422)
T ss_pred ecc------------------------------------------------CCCcEEEeechhcccCceeccCCCcceEE
Confidence 410 1234555565 3344444444 77889
Q ss_pred cccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEe--ccCCCcccCCccccccccCccceeeccCCCCce
Q 002209 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL--CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (953)
Q Consensus 337 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l--~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~ 414 (953)
+.|||.-+.|+.++. ..+.+.+||+..-...+. ....+..+.-+...+....+..+.|.|+-..++
T Consensus 322 V~WSPh~etvLASSg------------~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I 389 (422)
T KOG0264|consen 322 VEWSPHNETVLASSG------------TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTI 389 (422)
T ss_pred EEeCCCCCceeEecc------------cCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEE
Confidence 999999999887773 235889999973111111 111111111122335556677899999887655
Q ss_pred EE
Q 002209 415 YW 416 (953)
Q Consensus 415 ~~ 416 (953)
..
T Consensus 390 ~S 391 (422)
T KOG0264|consen 390 AS 391 (422)
T ss_pred EE
Confidence 44
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.12 Score=55.36 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=89.9
Q ss_pred CcccccccCCCCcE-EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKY-ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~-l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
+.++.+.|+|..-- |+.++ +.+.|.+.|+++.....+..... ......+..|+.+.
T Consensus 235 ~~Vs~l~F~P~n~s~i~ssS-------------yDGtiR~~D~~~~i~e~v~s~~~----------d~~~fs~~d~~~e~ 291 (498)
T KOG4328|consen 235 GPVSGLKFSPANTSQIYSSS-------------YDGTIRLQDFEGNISEEVLSLDT----------DNIWFSSLDFSAES 291 (498)
T ss_pred ccccceEecCCChhheeeec-------------cCceeeeeeecchhhHHHhhcCc----------cceeeeeccccCCC
Confidence 77889999995544 44444 24489999998776555544321 11233567788888
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEE-ecccCceEEEEEcCC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES-WYKTRRTRTWVISPG 489 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~-~~~~~~~~l~~~d~~ 489 (953)
..++|. +..+..-++|. ..++.+...+.-++..+.++++.|--.+++.++ .+++. +||.+.--
T Consensus 292 ~~vl~~-------------~~~G~f~~iD~-R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~--kIWD~R~l 355 (498)
T KOG4328|consen 292 RSVLFG-------------DNVGNFNVIDL-RTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTA--KIWDLRQL 355 (498)
T ss_pred ccEEEe-------------ecccceEEEEe-ecCCccchhhhhhhcccceeecCCCCchheeecccCcce--eeeehhhh
Confidence 877776 33444556665 234444445555566788999999887755544 44433 57765432
Q ss_pred CCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
.+..++.+-+-.+...+.+ ..|||+|-.|+....+
T Consensus 356 ~~K~sp~lst~~HrrsV~s------AyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 356 RGKASPFLSTLPHRRSVNS------AYFSPSGGTLLTTCQD 390 (498)
T ss_pred cCCCCcceecccccceeee------eEEcCCCCceEeeccC
Confidence 2211221212122222222 5699999888877643
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.41 Score=48.62 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=63.1
Q ss_pred ccceEeccCC-CeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 191 LNFVTWSQDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 191 ~~~~~wSPDG-~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
....+++|-- +.++|.++. ..-.++.|.++++..++....+.+ .....-.|||||++||.+-
T Consensus 70 ~Hgi~~~p~~~ravafARrP--------Gtf~~vfD~~~~~~pv~~~s~~~R--HfyGHGvfs~dG~~LYATE------- 132 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRP--------GTFAMVFDPNGAQEPVTLVSQEGR--HFYGHGVFSPDGRLLYATE------- 132 (366)
T ss_pred cCCeecCCCCcceEEEEecC--------CceEEEECCCCCcCcEEEecccCc--eeecccccCCCCcEEEeec-------
Confidence 3446667654 556666542 446678888887654433323221 1144677999999999761
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC----CcccccccCCCCcE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP----AVYTSLDPSPDEKY 345 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~----~~~~~~~~SpDG~~ 345 (953)
+ ..|+ ..+-|-+||.....+++.+- -+...+.|.+||+.
T Consensus 133 --------------n-----------------dfd~------~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrt 175 (366)
T COG3490 133 --------------N-----------------DFDP------NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRT 175 (366)
T ss_pred --------------C-----------------CCCC------CCceEEEEecccccceecccccCCcCcceeEEecCCcE
Confidence 1 1110 34566777774334444332 34457899999999
Q ss_pred EEEEE
Q 002209 346 ILISS 350 (953)
Q Consensus 346 l~~~~ 350 (953)
|+...
T Consensus 176 lvvan 180 (366)
T COG3490 176 LVVAN 180 (366)
T ss_pred EEEeC
Confidence 98775
|
|
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0037 Score=70.06 Aligned_cols=87 Identities=14% Similarity=0.231 Sum_probs=61.5
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
.....|.+.||.+ . .+..|+|.++.........+.++.+.++.+.+... ..++.|+||||||.++..++..+|+
T Consensus 112 ~li~~L~~~GY~~-~---~dL~g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~~g--~~kV~LVGHSMGGlva~~fl~~~p~ 185 (440)
T PLN02733 112 DMIEQLIKWGYKE-G---KTLFGFGYDFRQSNRLPETMDGLKKKLETVYKASG--GKKVNIISHSMGGLLVKCFMSLHSD 185 (440)
T ss_pred HHHHHHHHcCCcc-C---CCcccCCCCccccccHHHHHHHHHHHHHHHHHHcC--CCCEEEEEECHhHHHHHHHHHHCCH
Confidence 4456788999977 3 34456665544333334556777777777765532 3689999999999999999988875
Q ss_pred c----ccEEEEcccCCC
Q 002209 783 L----FCCGIARSGAYN 795 (953)
Q Consensus 783 ~----~~a~v~~~~~~d 795 (953)
. ++..|++++.+.
T Consensus 186 ~~~k~I~~~I~la~P~~ 202 (440)
T PLN02733 186 VFEKYVNSWIAIAAPFQ 202 (440)
T ss_pred hHHhHhccEEEECCCCC
Confidence 3 678888887655
|
|
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.011 Score=54.82 Aligned_cols=136 Identities=14% Similarity=0.125 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCccccc-----ch
Q 002209 735 FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED-----RT 809 (953)
Q Consensus 735 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~-----~~ 809 (953)
+.....+.+.+++..+. | ..++|+|.|.||+.|.|++.++ -+++++ +.|..-..-...++.... +.
T Consensus 41 ~p~~a~~ele~~i~~~~-----~-~~p~ivGssLGGY~At~l~~~~--Girav~-~NPav~P~e~l~gylg~~en~ytg~ 111 (191)
T COG3150 41 DPQQALKELEKAVQELG-----D-ESPLIVGSSLGGYYATWLGFLC--GIRAVV-FNPAVRPYELLTGYLGRPENPYTGQ 111 (191)
T ss_pred CHHHHHHHHHHHHHHcC-----C-CCceEEeecchHHHHHHHHHHh--CChhhh-cCCCcCchhhhhhhcCCCCCCCCcc
Confidence 34555555555543331 2 2489999999999999999887 366554 334322100000110000 01
Q ss_pred hh----hhHHHHHhcCcccccCCCCCc--EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH
Q 002209 810 LW----EATSTYVEMSPFMSANKLKKP--ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883 (953)
Q Consensus 810 ~~----~~~~~~~~~sp~~~~~~i~~P--~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~ 883 (953)
.| ...+... ...+..++.| +.++.-+.|++.+ +.++...|.... ..+..|.+|.|.. .
T Consensus 112 ~y~le~~hI~~l~----~~~~~~l~~p~~~~lL~qtgDEvLD--yr~a~a~y~~~~-------~~V~dgg~H~F~~---f 175 (191)
T COG3150 112 EYVLESRHIATLC----VLQFRELNRPRCLVLLSQTGDEVLD--YRQAVAYYHPCY-------EIVWDGGDHKFKG---F 175 (191)
T ss_pred eEEeehhhHHHHH----HhhccccCCCcEEEeecccccHHHH--HHHHHHHhhhhh-------heeecCCCccccc---h
Confidence 11 1111111 1223344444 3444555599877 777777766554 4467889999854 4
Q ss_pred HHHHHHHHHHHH
Q 002209 884 MHVLWETDRWLQ 895 (953)
Q Consensus 884 ~~~~~~i~~fl~ 895 (953)
...++.|..|..
T Consensus 176 ~~~l~~i~aF~g 187 (191)
T COG3150 176 SRHLQRIKAFKG 187 (191)
T ss_pred HHhHHHHHHHhc
Confidence 566778887753
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.03 Score=58.32 Aligned_cols=64 Identities=13% Similarity=0.018 Sum_probs=56.1
Q ss_pred CCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 002209 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (953)
Q Consensus 828 ~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~f 893 (953)
...+|.|++.++.|.+++ ..+.+++.+..++.|.+++...|++.+|.-....+.+.+.+.+.+|
T Consensus 176 ~~~~p~lylYS~~D~l~~--~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~f 239 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIP--WRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEF 239 (240)
T ss_pred CCCCCeEEecCCCCcCcC--HHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhh
Confidence 346899999999999999 9999999999999999999999999999876677777777777766
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.024 Score=62.52 Aligned_cols=266 Identities=14% Similarity=0.115 Sum_probs=135.0
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeE--EEEEecCCC-
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL--LVCTIPLLR- 266 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~--l~~~~~~~~- 266 (953)
.+...+-.|-|.+|+--+ ..+.|.+|.+.||.+.+.+..... +..++|.|.+.. |+++....-
T Consensus 402 ~Vr~iSvdp~G~wlasGs---------dDGtvriWEi~TgRcvr~~~~d~~-----I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGS---------DDGTVRIWEIATGRCVRTVQFDSE-----IRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred eEEEEEecCCcceeeecC---------CCCcEEEEEeecceEEEEEeecce-----eEEEEecCCCCceeEEEEecCceE
Confidence 577788889999998733 355666667778887665554443 789999998863 443321110
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEE----c-CCceeEeCCCCcccccccCC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS----L-DGTVKEIGPPAVYTSLDPSP 341 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~----~-~g~~~~l~~~~~~~~~~~Sp 341 (953)
...+.. |..+... ...+++....+...-+ ..-..|.-. + -|-...|..+..+..+.|..
T Consensus 468 ivnp~~-----G~~~e~~---------~t~ell~~~~~~~~p~--~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 468 IVNPIF-----GDRLEVG---------PTKELLASAPNESEPD--AAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred EeCccc-----cchhhhc---------chhhhhhcCCCccCCc--ccceeechhhhhhhccceEEEEecCCccceeeeec
Confidence 000000 0000000 0000000000000000 111123222 1 12223444447788999999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
+|.+|+.+..+. ....|.+.++...... .+.. ...+-+....|.|-...++..
T Consensus 532 kGDYlatV~~~~----------~~~~VliHQLSK~~sQ----~PF~--------kskG~vq~v~FHPs~p~lfVa----- 584 (733)
T KOG0650|consen 532 KGDYLATVMPDS----------GNKSVLIHQLSKRKSQ----SPFR--------KSKGLVQRVKFHPSKPYLFVA----- 584 (733)
T ss_pred CCceEEEeccCC----------CcceEEEEeccccccc----Cchh--------hcCCceeEEEecCCCceEEEE-----
Confidence 999999987433 2336777777632211 1110 111223356787765544333
Q ss_pred CCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeec-
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD- 500 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~- 500 (953)
....|.+||+ ....-.+.|..+...+..++.+|.|..|+..+..+ ++.++|++-.. ++.....
T Consensus 585 ---------Tq~~vRiYdL--~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~----k~~WfDldlss-kPyk~lr~ 648 (733)
T KOG0650|consen 585 ---------TQRSVRIYDL--SKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK----KMCWFDLDLSS-KPYKTLRL 648 (733)
T ss_pred ---------eccceEEEeh--hHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC----eeEEEEcccCc-chhHHhhh
Confidence 2345778886 22222233444445577889999999998887654 66667766542 2222111
Q ss_pred --CCCccccCCCCCCC-eEeccCCCEEEEEe
Q 002209 501 --RSSEDVYSDPGSPM-MRRTSTGTYVIAKI 528 (953)
Q Consensus 501 --~~~~~~~~~~~~p~-~~~SpDG~~l~~~~ 528 (953)
.....+.....-|. -+-|+||..++|..
T Consensus 649 H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 649 HEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 11112222222222 24578888887775
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.073 Score=53.60 Aligned_cols=154 Identities=18% Similarity=0.105 Sum_probs=83.9
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCC--CcEEEEEeChHHHHHHHHHHhC
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHP--SKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~--~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
...+.|+++||+|++.+|.- ++ .+.............+++.|.++...+. -+++=+|||+|.-+-+.+....
T Consensus 38 ~lLe~La~~Gy~ViAtPy~~--tf----DH~~~A~~~~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~ 111 (250)
T PF07082_consen 38 YLLERLADRGYAVIATPYVV--TF----DHQAIAREVWERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLF 111 (250)
T ss_pred HHHHHHHhCCcEEEEEecCC--CC----cHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhc
Confidence 45566889999999955521 22 1112223334445566677776544333 3788899999999999888776
Q ss_pred CCcccEEEEcccCCCCC---CCCcC-------cccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHH
Q 002209 781 PHLFCCGIARSGAYNRT---LTPFG-------FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQ 850 (953)
Q Consensus 781 p~~~~a~v~~~~~~d~~---~~~~~-------~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~ 850 (953)
+..-++-|+++ +-|.. ..++. ..+....+.+......... .....|+|.=.+|. .++
T Consensus 112 ~~~r~gniliS-FNN~~a~~aIP~~~~l~~~l~~EF~PsP~ET~~li~~~Y-------~~~rnLLIkF~~D~-----iDq 178 (250)
T PF07082_consen 112 DVERAGNILIS-FNNFPADEAIPLLEQLAPALRLEFTPSPEETRRLIRESY-------QVRRNLLIKFNDDD-----IDQ 178 (250)
T ss_pred cCcccceEEEe-cCChHHHhhCchHhhhccccccCccCCHHHHHHHHHHhc-------CCccceEEEecCCC-----ccc
Confidence 43334445543 11100 00100 0011111222222222111 12335666666665 578
Q ss_pred HHHHHHHHHhCC-CcEEEEEeCCCCcc
Q 002209 851 SDRFFNALKGHG-ALCRLVILPFESHG 876 (953)
Q Consensus 851 ~~~~~~~l~~~g-~~~~~~~~~~~~H~ 876 (953)
+..+.+.|+... .-++.+..+| +|.
T Consensus 179 t~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 179 TDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred hHHHHHHHhhhccccceEEeCCC-CCC
Confidence 888888888652 2356777886 885
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.013 Score=69.56 Aligned_cols=167 Identities=12% Similarity=0.145 Sum_probs=89.6
Q ss_pred CcccccccCCCCc-EEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEK-YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
+.+..+.|.|.+. .||-..+ .++|++||++.-+ ...+.. .. .....+..++|.-.-
T Consensus 117 G~V~gLDfN~~q~nlLASGa~-------------~geI~iWDlnn~~-tP~~~~----~~-----~~~~eI~~lsWNrkv 173 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGAD-------------DGEILIWDLNKPE-TPFTPG----SQ-----APPSEIKCLSWNRKV 173 (1049)
T ss_pred CceeeeeccccCCceeeccCC-------------CCcEEEeccCCcC-CCCCCC----CC-----CCcccceEeccchhh
Confidence 6778899999888 4444332 2499999998521 111110 00 001233456675544
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC-ceEEeec--ccccCCeeeccCCce-EEEEEeccc-CceEEEE
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKL--DLRYGGISWCDDSLA-LVYESWYKT-RRTRTWV 485 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~-~~~l~~~--~~~~~~~~~SpDg~~-l~~~~~~~~-~~~~l~~ 485 (953)
+.|+-. .+..+...+||+ ...+ ...+... ...+..+.|.||... |+.+++++. -...+|.
T Consensus 174 qhILAS------------~s~sg~~~iWDl---r~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWD 238 (1049)
T KOG0307|consen 174 SHILAS------------GSPSGRAVIWDL---RKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWD 238 (1049)
T ss_pred hHHhhc------------cCCCCCceeccc---cCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeec
Confidence 443322 133456778886 3222 2223333 234668999999765 555544432 2234554
Q ss_pred EcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceE
Q 002209 486 ISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (953)
Q Consensus 486 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~ 565 (953)
+.-.+ .+..+...+...+.+ +.|.+.+..++..... ..++..|+.++|+..
T Consensus 239 lR~as---sP~k~~~~H~~Gils------lsWc~~D~~lllSsgk--------------------D~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 239 LRFAS---SPLKILEGHQRGILS------LSWCPQDPRLLLSSGK--------------------DNRIICWNPNTGEVL 289 (1049)
T ss_pred ccccC---Cchhhhcccccceee------eccCCCCchhhhcccC--------------------CCCeeEecCCCceEe
Confidence 43332 344444444443433 7898888555544421 224889999988754
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.014 Score=60.65 Aligned_cols=135 Identities=13% Similarity=0.134 Sum_probs=83.6
Q ss_pred ceEEEEEc-CCce-eEeC---CC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCC
Q 002209 314 TQLVLVSL-DGTV-KEIG---PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPL 386 (953)
Q Consensus 314 ~~l~~~~~-~g~~-~~l~---~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~ 386 (953)
.+||++|+ +=++ ..|. .+ .+...+++++++.+|||-.... .++|.+||+.+-. ...+..+.
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t-----------~GdV~l~d~~nl~~v~~I~aH~- 173 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT-----------SGDVVLFDTINLQPVNTINAHK- 173 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-----------CceEEEEEcccceeeeEEEecC-
Confidence 45999998 5322 2221 12 4556667777788999876433 5699999997422 22333322
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeE-EEEecCCCCCCCceEEeec--ccccCCeee
Q 002209 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDII-YTQQAEPVQGEGPEILHKL--DLRYGGISW 463 (953)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l-~~~d~~~~~g~~~~~l~~~--~~~~~~~~~ 463 (953)
+..-.++|++||..||-. +.++.| .++.. .+|.+...+-.+ ...+.+++|
T Consensus 174 ------------~~lAalafs~~G~llATA-------------SeKGTVIRVf~v--~~G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 174 ------------GPLAALAFSPDGTLLATA-------------SEKGTVIRVFSV--PEGQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred ------------CceeEEEECCCCCEEEEe-------------ccCceEEEEEEc--CCccEeeeeeCCceeeEEEEEEE
Confidence 223468999999988766 445444 45553 344444444222 344567999
Q ss_pred ccCCceEEEEEecccCceEEEEEcCC
Q 002209 464 CDDSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 464 SpDg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
|||+..|..+++.++. +++.++..
T Consensus 227 s~ds~~L~~sS~TeTV--HiFKL~~~ 250 (391)
T KOG2110|consen 227 SPDSQFLAASSNTETV--HIFKLEKV 250 (391)
T ss_pred CCCCCeEEEecCCCeE--EEEEeccc
Confidence 9999999988876654 67766643
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.54 Score=50.69 Aligned_cols=155 Identities=13% Similarity=0.059 Sum_probs=82.6
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc--CceEEEeccCCCcccCCccccccccCccceeeccC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
..+.+..++.+...++|..+-+ ..-+||+. +++...+.-+. ..+.++++.|-
T Consensus 280 ~~fs~~d~~~e~~~vl~~~~~G-------------~f~~iD~R~~~s~~~~~~lh~-------------kKI~sv~~NP~ 333 (498)
T KOG4328|consen 280 IWFSSLDFSAESRSVLFGDNVG-------------NFNVIDLRTDGSEYENLRLHK-------------KKITSVALNPV 333 (498)
T ss_pred eeeeeccccCCCccEEEeeccc-------------ceEEEEeecCCccchhhhhhh-------------cccceeecCCC
Confidence 5677888998888888876332 55567765 43333332221 23456777776
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE--eecccccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
-...+.. .+.++.+-+||+....+...-.| ..+...+.+..|||+|..|+....++. .+||...
T Consensus 334 ~p~~laT------------~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~--IRv~dss 399 (498)
T KOG4328|consen 334 CPWFLAT------------ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE--IRVFDSS 399 (498)
T ss_pred Cchheee------------cccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc--eEEeecc
Confidence 6644333 13344566788633343331123 345667788999999888887765542 2555442
Q ss_pred -CCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 488 -PGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 488 -~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
..........|.......-.-.+.. ..|.||-..++...
T Consensus 400 ~~sa~~~p~~~I~Hn~~t~RwlT~fK--A~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 400 CISAKDEPLGTIPHNNRTGRWLTPFK--AAWDPDYNLIVVGR 439 (498)
T ss_pred cccccCCccceeeccCcccccccchh--heeCCCccEEEEec
Confidence 1122122233332222111111111 35888776665554
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.56 Score=54.72 Aligned_cols=251 Identities=10% Similarity=0.119 Sum_probs=135.3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+-..+|.|---||+..- .++.-+||-+.. |....-+...+ +.+..+.|.|++-.++..
T Consensus 11 RvKglsFHP~rPwILtsl-------HsG~IQlWDYRM--~tli~rFdeHd----GpVRgv~FH~~qplFVSG-------- 69 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSL-------HSGVIQLWDYRM--GTLIDRFDEHD----GPVRGVDFHPTQPLFVSG-------- 69 (1202)
T ss_pred cccceecCCCCCEEEEee-------cCceeeeehhhh--hhHHhhhhccC----CccceeeecCCCCeEEec--------
Confidence 556688999889998854 344566665553 33322222222 238899999998777643
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccCCCCcEEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILI 348 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDG~~l~~ 348 (953)
..| ..-.+|.|....-...|... +.++...|.+.=-||+.
T Consensus 70 --------------------------------GDD-------ykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlS 110 (1202)
T KOG0292|consen 70 --------------------------------GDD-------YKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILS 110 (1202)
T ss_pred --------------------------------CCc-------cEEEEEecccceehhhhccccceeEEeeccCCCceEEE
Confidence 111 11223333222223334444 78889999999999998
Q ss_pred EEecCCccccccCCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
.+.+. +|.+|+-.. +.+..++.+... +--.+|.|-...|+-.
T Consensus 111 ASDDQ-------------TIrIWNwqsr~~iavltGHnHY-------------VMcAqFhptEDlIVSa----------- 153 (1202)
T KOG0292|consen 111 ASDDQ-------------TIRIWNWQSRKCIAVLTGHNHY-------------VMCAQFHPTEDLIVSA----------- 153 (1202)
T ss_pred ccCCC-------------eEEEEeccCCceEEEEecCceE-------------EEeeccCCccceEEEe-----------
Confidence 88554 899998874 445556654321 1223455544433332
Q ss_pred ccccCCeEEEEecC--------CC---------------CCC--C-c-eEEeecccccCCeeeccCCceEEEEEecccCc
Q 002209 428 EVTPRDIIYTQQAE--------PV---------------QGE--G-P-EILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (953)
Q Consensus 428 ~~~~~~~l~~~d~~--------~~---------------~g~--~-~-~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 480 (953)
+-...|.+||.. |. -|+ . . ..|.+++..++..+|.|---.|+..+.+ +.
T Consensus 154 --SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DD--Rq 229 (1202)
T KOG0292|consen 154 --SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADD--RQ 229 (1202)
T ss_pred --cccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCc--ce
Confidence 333345555531 00 000 0 0 1234556667777888866656655443 34
Q ss_pred eEEEEEcCCCCCCCcEE-eecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEEC
Q 002209 481 TRTWVISPGSKDVAPRI-LFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDI 559 (953)
Q Consensus 481 ~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~ 559 (953)
.+||+++...- -.+ .-..+...+.+ +-|.|.-..|+....+. .|.+||+
T Consensus 230 VKlWrmnetKa---WEvDtcrgH~nnVss------vlfhp~q~lIlSnsEDk---------------------sirVwDm 279 (1202)
T KOG0292|consen 230 VKLWRMNETKA---WEVDTCRGHYNNVSS------VLFHPHQDLILSNSEDK---------------------SIRVWDM 279 (1202)
T ss_pred eeEEEeccccc---eeehhhhcccCCcce------EEecCccceeEecCCCc---------------------cEEEEec
Confidence 58999874331 111 01122222222 45666555555444221 3889998
Q ss_pred CCCceEEEeccC
Q 002209 560 NTGSKERIWESD 571 (953)
Q Consensus 560 ~~~~~~~l~~~~ 571 (953)
......+.+..+
T Consensus 280 ~kRt~v~tfrre 291 (1202)
T KOG0292|consen 280 TKRTSVQTFRRE 291 (1202)
T ss_pred ccccceeeeecc
Confidence 766655555444
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.2 Score=52.13 Aligned_cols=181 Identities=12% Similarity=0.070 Sum_probs=111.4
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceee-cccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP-LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
+++..+.+-|-.+|++. +..+..+-++|+++|+... |+.+-. .+..+++|+---++|...
T Consensus 152 gWVr~vavdP~n~wf~t---------gs~DrtikIwDlatg~LkltltGhi~-----~vr~vavS~rHpYlFs~g----- 212 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFAT---------GSADRTIKIWDLATGQLKLTLTGHIE-----TVRGVAVSKRHPYLFSAG----- 212 (460)
T ss_pred ceEEEEeeCCCceeEEe---------cCCCceeEEEEcccCeEEEeecchhh-----eeeeeeecccCceEEEec-----
Confidence 47888999998888776 3456788899999998643 332222 267888998877887651
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCC-CcccccccCCCCc
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-AVYTSLDPSPDEK 344 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~-~~~~~~~~SpDG~ 344 (953)
...++--+|+ ..+.-+ .... ..+..++..|--.
T Consensus 213 --------------------------------------------edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld 248 (460)
T KOG0285|consen 213 --------------------------------------------EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD 248 (460)
T ss_pred --------------------------------------------CCCeeEEEechhhhhHHHhccccceeEEEeccccce
Confidence 1134445566 333222 2222 5566777788666
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
.|+..+.+ ..+.+||+.+.. +..+..+.. -+.++.+.|-...++-.
T Consensus 249 vl~t~grD-------------st~RvWDiRtr~~V~~l~GH~~-------------~V~~V~~~~~dpqvit~------- 295 (460)
T KOG0285|consen 249 VLVTGGRD-------------STIRVWDIRTRASVHVLSGHTN-------------PVASVMCQPTDPQVITG------- 295 (460)
T ss_pred eEEecCCc-------------ceEEEeeecccceEEEecCCCC-------------cceeEEeecCCCceEEe-------
Confidence 66655433 388999998654 333443321 12334444433333332
Q ss_pred CcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEE
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYE 473 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~ 473 (953)
+.+..|.+||+ ..|.....++.+...+..+...|+-..++.+
T Consensus 296 ------S~D~tvrlWDl--~agkt~~tlt~hkksvral~lhP~e~~fASa 337 (460)
T KOG0285|consen 296 ------SHDSTVRLWDL--RAGKTMITLTHHKKSVRALCLHPKENLFASA 337 (460)
T ss_pred ------cCCceEEEeee--ccCceeEeeecccceeeEEecCCchhhhhcc
Confidence 44567889997 5566666788888888888888876654444
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.019 Score=64.38 Aligned_cols=117 Identities=12% Similarity=0.093 Sum_probs=72.3
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
.....++..|.-|+++....++ +|.++++.. ++.+........++.++ .+...|.|
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQDr-------------nirif~i~sgKq~k~FKgs~~~eG~lI----------Kv~lDPSg 653 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQDR-------------NIRIFDIESGKQVKSFKGSRDHEGDLI----------KVILDPSG 653 (1080)
T ss_pred ceEEEeeeCCCcceEEEEeccc-------------ceEEEeccccceeeeecccccCCCceE----------EEEECCCc
Confidence 3455678889999999888665 999999984 44444443322222222 34455555
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
-+|+-. -....|-++|. ..|.-..+.+.+...+.++.|++|=|.|+..+.++ -.-+|.+..
T Consensus 654 iY~atS-------------csdktl~~~Df--~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDg--CIFvW~lp~ 714 (1080)
T KOG1408|consen 654 IYLATS-------------CSDKTLCFVDF--VSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDG--CIFVWKLPL 714 (1080)
T ss_pred cEEEEe-------------ecCCceEEEEe--ccchhhhhhcCcchheeeeeecccchhheeecCCc--eEEEEECch
Confidence 433322 12335677775 34444455677788889999999999988776443 234565554
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.9 Score=46.51 Aligned_cols=113 Identities=15% Similarity=0.287 Sum_probs=71.5
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceee--cccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP--LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~--lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
.++.++|||..+.++-... -++..++|-+... |.... ... +++.+-.+.|+.||..++...
T Consensus 29 sIS~l~FSP~~~~~~~A~S------WD~tVR~wevq~~-g~~~~ka~~~-----~~~PvL~v~WsddgskVf~g~----- 91 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGS------WDGTVRIWEVQNS-GQLVPKAQQS-----HDGPVLDVCWSDDGSKVFSGG----- 91 (347)
T ss_pred chheeEeccccCceEEecc------cCCceEEEEEecC-Ccccchhhhc-----cCCCeEEEEEccCCceEEeec-----
Confidence 6889999995544444332 3356667766644 33221 111 222266899999998888651
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCc-
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEK- 344 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~- 344 (953)
...++-.+|+ +|++..+... +.+....|-+-..
T Consensus 92 --------------------------------------------~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~ 127 (347)
T KOG0647|consen 92 --------------------------------------------CDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNY 127 (347)
T ss_pred --------------------------------------------cCCceEEEEccCCCeeeeeecccceeEEEEecCCCc
Confidence 2245667788 8888888776 7777777776555
Q ss_pred -EEEEEEecCCccccccCCCCCcceEEEeccCc
Q 002209 345 -YILISSIHRPYSFIVPCGRFPRQVGVWTTDGI 376 (953)
Q Consensus 345 -~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~ 376 (953)
.|+..+ +.+.|..||....
T Consensus 128 ~cl~TGS-------------WDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 128 QCLVTGS-------------WDKTLKFWDTRSS 147 (347)
T ss_pred ceeEecc-------------cccceeecccCCC
Confidence 333333 5568999998743
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.2 Score=51.62 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=37.7
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~ 259 (953)
.++..+|.||.++|+.+.+ +...|+.++.+|.-.+++.-.+... .+.+++..+|+.++
T Consensus 23 e~SGLTy~pd~~tLfaV~d--------~~~~i~els~~G~vlr~i~l~g~~D----~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQD--------EPGEIYELSLDGKVLRRIPLDGFGD----YEGITYLGNGRYVL 80 (248)
T ss_dssp -EEEEEEETTTTEEEEEET--------TTTEEEEEETT--EEEEEE-SS-SS----EEEEEE-STTEEEE
T ss_pred CccccEEcCCCCeEEEEEC--------CCCEEEEEcCCCCEEEEEeCCCCCC----ceeEEEECCCEEEE
Confidence 4889999999999887653 4678999998765555543222111 66888888886555
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.082 Score=51.33 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=66.3
Q ss_pred hHHHHHHHcCcEEEEcCCCC-CCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh--
Q 002209 703 TSVLLWLARGFAILGGPTTP-IIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH-- 779 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~-~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~-- 779 (953)
....++.+.+|..+.+..+. +.|+|.. ...+..+|+..+++++...+. .+.|.++|||-|..=.++++.+
T Consensus 57 ~L~~~lde~~wslVq~q~~Ssy~G~Gt~-----slk~D~edl~~l~~Hi~~~~f--St~vVL~GhSTGcQdi~yYlTnt~ 129 (299)
T KOG4840|consen 57 MLNRYLDENSWSLVQPQLRSSYNGYGTF-----SLKDDVEDLKCLLEHIQLCGF--STDVVLVGHSTGCQDIMYYLTNTT 129 (299)
T ss_pred HHHHHHhhccceeeeeeccccccccccc-----cccccHHHHHHHHHHhhccCc--ccceEEEecCccchHHHHHHHhcc
Confidence 44567788999998855433 3566654 245678899999998866543 3489999999999998888853
Q ss_pred CCCcccEEEEcccCCCCC
Q 002209 780 APHLFCCGIARSGAYNRT 797 (953)
Q Consensus 780 ~p~~~~a~v~~~~~~d~~ 797 (953)
.|..++|+|+.+|++|..
T Consensus 130 ~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 130 KDRKIRAAILQAPVSDRE 147 (299)
T ss_pred chHHHHHHHHhCccchhh
Confidence 235689999999999866
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.22 Score=59.25 Aligned_cols=128 Identities=12% Similarity=0.123 Sum_probs=79.2
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEe-ccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL-CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l-~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
.+|||+... +++|.+.|.+|...+.+ ..... -+.++.|||||+.|+|.+....
T Consensus 319 tkiAfv~~~------------~~~L~~~D~dG~n~~~ve~~~~~-------------~i~sP~~SPDG~~vAY~ts~e~- 372 (912)
T TIGR02171 319 AKLAFRNDV------------TGNLAYIDYTKGASRAVEIEDTI-------------SVYHPDISPDGKKVAFCTGIEG- 372 (912)
T ss_pred eeEEEEEcC------------CCeEEEEecCCCCceEEEecCCC-------------ceecCcCCCCCCEEEEEEeecC-
Confidence 358888732 23899999999887766 33221 1246889999999999422211
Q ss_pred CCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCce-EEEEEeccc-------CceEEEEEcCCCCC-C
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA-LVYESWYKT-------RRTRTWVISPGSKD-V 493 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~-l~~~~~~~~-------~~~~l~~~d~~~~~-~ 493 (953)
+.++..||+.++ ...+.....|.-....+..-...+.|.. |+|.+..++ .....|.+.-..|. +
T Consensus 373 ------~~g~s~vYv~~L-~t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gkfg 445 (912)
T TIGR02171 373 ------LPGKSSVYVRNL-NASGSGLVKLPVENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGKFG 445 (912)
T ss_pred ------CCCCceEEEEeh-hccCCCceEeecccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCCCC
Confidence 124567999998 3344455555444444444455677766 777764322 12357888876654 5
Q ss_pred CcEEeecCCCc
Q 002209 494 APRILFDRSSE 504 (953)
Q Consensus 494 ~~~~~~~~~~~ 504 (953)
+|+.+++..+.
T Consensus 446 ~p~kl~dga~h 456 (912)
T TIGR02171 446 TPKKLFDGAYH 456 (912)
T ss_pred Cchhhhccccc
Confidence 67777776543
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.79 Score=53.52 Aligned_cols=114 Identities=17% Similarity=0.132 Sum_probs=70.8
Q ss_pred ccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002209 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (953)
Q Consensus 334 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i 413 (953)
.+-.++||.|+++|....++ .|.+|.--+.+-. ...+..+..+...+..++||+||..|
T Consensus 208 ~t~~~~spn~~~~Aa~d~dG-------------rI~vw~d~~~~~~--------~~t~t~lHWH~~~V~~L~fS~~G~~L 266 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDG-------------RILVWRDFGSSDD--------SETCTLLHWHHDEVNSLSFSSDGAYL 266 (792)
T ss_pred ceeEEeccccceEEEeccCC-------------cEEEEeccccccc--------cccceEEEecccccceeEEecCCceE
Confidence 45689999999998876443 7888855442100 11111222333445689999999865
Q ss_pred eEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
+-. +....+.+|.+ ..++.+.|..-...+..+.|||||......-.++ .|..+..
T Consensus 267 lSG-------------G~E~VLv~Wq~---~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DN----qI~li~~ 321 (792)
T KOG1963|consen 267 LSG-------------GREGVLVLWQL---ETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDN----QIHLIKA 321 (792)
T ss_pred eec-------------ccceEEEEEee---cCCCcccccccCCeeEEEEEcCCCCeEEEEecCc----eEEEEec
Confidence 543 33456677875 4455556666667778899999998755544433 4445544
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.15 Score=57.09 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=41.5
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeec--ccCCCccccccccceEEecCCeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
..+....|-| |+..+.... |+..+..||+++++.+.. .-... ..+.+.+|.|+...+|++
T Consensus 101 nAifDl~wap-ge~~lVsas--------GDsT~r~Wdvk~s~l~G~~~~~GH~----~SvkS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 101 NAIFDLKWAP-GESLLVSAS--------GDSTIRPWDVKTSRLVGGRLNLGHT----GSVKSECFMPTNPAVFCT 162 (720)
T ss_pred ceeEeeccCC-CceeEEEcc--------CCceeeeeeeccceeecceeecccc----cccchhhhccCCCcceee
Confidence 3788899999 776666442 466777888888776544 22222 226788999999888776
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.042 Score=56.23 Aligned_cols=220 Identities=9% Similarity=0.036 Sum_probs=115.2
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..++..+|++|+..||+..+.. ++.++...+.+ .+......- ....+..+.|+|.+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~-------------evhiy~~~~~~~w~~~htls~----------Hd~~vtgvdWap~s 67 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNH-------------EVHIYSMLGADLWEPAHTLSE----------HDKIVTGVDWAPKS 67 (361)
T ss_pred CceeeeeecCCCceEEeccCCc-------------eEEEEEecCCCCceeceehhh----------hCcceeEEeecCCC
Confidence 4577889999999999987443 78888887766 333222211 11233458999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc---eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~---~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
.+|+-- +....-|++.. .++++- -.|.........+.|||.+..++..+.... ..++.+.
T Consensus 68 nrIvtc-------------s~drnayVw~~--~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~--isVcy~E 130 (361)
T KOG1523|consen 68 NRIVTC-------------SHDRNAYVWTQ--PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARL--ISVCYYE 130 (361)
T ss_pred CceeEc-------------cCCCCcccccc--CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccE--EEEEEEe
Confidence 888765 33344566653 234332 124556677788999999888776653221 2344443
Q ss_pred CCCCCCCcEEeecCCC-ccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEE
Q 002209 488 PGSKDVAPRILFDRSS-EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566 (953)
Q Consensus 488 ~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~ 566 (953)
-+..-=-.+.+ ..+. ..+.. +.|.|++-.|+...-+. +.+|+ ..|+-+++++..-.
T Consensus 131 ~ENdWWVsKhi-kkPirStv~s------ldWhpnnVLlaaGs~D~---k~rVf-------------SayIK~Vdekpap~ 187 (361)
T KOG1523|consen 131 QENDWWVSKHI-KKPIRSTVTS------LDWHPNNVLLAAGSTDG---KCRVF-------------SAYIKGVDEKPAPT 187 (361)
T ss_pred cccceehhhhh-CCccccceee------eeccCCcceecccccCc---ceeEE-------------EEeeeccccCCCCC
Confidence 22210000000 0000 00111 56777776665554221 11111 13344444443322
Q ss_pred EeccCcccceeeeEeec----cCCccccccccCCEEEEEEecCCCCceEEEEECCCCC
Q 002209 567 IWESDKEKYYETTVALM----SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (953)
Q Consensus 567 l~~~~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~ 620 (953)
-|... ..|..+..-. .......|||+|.++.++.... .+++.|..+..
T Consensus 188 pWgsk--~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds----~v~~~da~~p~ 239 (361)
T KOG1523|consen 188 PWGSK--MPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDS----TVSFVDAAGPS 239 (361)
T ss_pred CCccC--CcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCC----ceEEeecCCCc
Confidence 23322 1222211111 1223467999999999876643 47777765554
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.15 Score=58.59 Aligned_cols=111 Identities=14% Similarity=-0.043 Sum_probs=59.7
Q ss_pred CCCCceecCCCCEEEEEecC--CCCCccccccccceeceEEecCCC------CCCcceeeeeceEEEEccCCCCCCceee
Q 002209 110 PLPALSFSPQRDKILFLKRR--ALPPLEELARPEEKLAGLRIDGKC------NTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~i~~~~~~g~~~~~~~ 181 (953)
+....++||||+++.+++.. .+..+..+...+.. ..+.+++.. ++.......+.+.++|.......+ ...
T Consensus 236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~-~~v 313 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-WVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAG-SAL 313 (635)
T ss_pred CcccceECCCCCEEEEeccCcccCcceeeeccccCc-eEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCC-cce
Confidence 45678999999999888643 22333333332222 333333321 111111111347777763210001 112
Q ss_pred eecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc
Q 002209 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK 230 (953)
Q Consensus 182 l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~ 230 (953)
+..++.+........||||++|+.+.. -...+-++|++..+
T Consensus 314 ~~yIPVGKsPHGV~vSPDGkylyVank--------lS~tVSVIDv~k~k 354 (635)
T PRK02888 314 TRYVPVPKNPHGVNTSPDGKYFIANGK--------LSPTVTVIDVRKLD 354 (635)
T ss_pred EEEEECCCCccceEECCCCCEEEEeCC--------CCCcEEEEEChhhh
Confidence 222445567788899999999887542 35677788877643
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.67 Score=48.40 Aligned_cols=234 Identities=15% Similarity=0.089 Sum_probs=127.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCce-eeeecCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE-IEIQGFPDG 188 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~-~~l~~~~~~ 188 (953)
++..+++-|-.+|++..+.+ ..|.|||+.+ ++. -.|+++-
T Consensus 153 WVr~vavdP~n~wf~tgs~D---------------------------------rtikIwDlat----g~LkltltGhi-- 193 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSAD---------------------------------RTIKIWDLAT----GQLKLTLTGHI-- 193 (460)
T ss_pred eEEEEeeCCCceeEEecCCC---------------------------------ceeEEEEccc----CeEEEeecchh--
Confidence 45566777777777666654 4678999954 332 2233222
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+..+++|+---+| |... +...+-.||++..+..+-..+.-.. +..+...|--..|+..
T Consensus 194 ~~vr~vavS~rHpYl-Fs~g--------edk~VKCwDLe~nkvIR~YhGHlS~----V~~L~lhPTldvl~t~------- 253 (460)
T KOG0285|consen 194 ETVRGVAVSKRHPYL-FSAG--------EDKQVKCWDLEYNKVIRHYHGHLSG----VYCLDLHPTLDVLVTG------- 253 (460)
T ss_pred heeeeeeecccCceE-EEec--------CCCeeEEEechhhhhHHHhccccce----eEEEeccccceeEEec-------
Confidence 368889999755544 5432 3678889999887765543332211 4455555666666644
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC-CcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDG~~ 345 (953)
.+| +.+.++|+ +. .+..+... ..+.++.+-|-.-.
T Consensus 254 ---------------------------------grD---------st~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpq 291 (460)
T KOG0285|consen 254 ---------------------------------GRD---------STIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQ 291 (460)
T ss_pred ---------------------------------CCc---------ceEEEeeecccceEEEecCCCCcceeEEeecCCCc
Confidence 111 33444555 44 34444433 55666666663334
Q ss_pred EEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
|+..+.+ ..|.+||+. |+....++.+.. .++.+...|+-..++-
T Consensus 292 vit~S~D-------------~tvrlWDl~agkt~~tlt~hkk-------------svral~lhP~e~~fAS--------- 336 (460)
T KOG0285|consen 292 VITGSHD-------------STVRLWDLRAGKTMITLTHHKK-------------SVRALCLHPKENLFAS--------- 336 (460)
T ss_pred eEEecCC-------------ceEEEeeeccCceeEeeecccc-------------eeeEEecCCchhhhhc---------
Confidence 5555533 389999997 556666776542 2355666665432221
Q ss_pred cccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
...+.+-.+++ ..|.-...+..+...+..++-..||- +++..++ ..++..|..++
T Consensus 337 -----as~dnik~w~~--p~g~f~~nlsgh~~iintl~~nsD~v--~~~G~dn---g~~~fwdwksg 391 (460)
T KOG0285|consen 337 -----ASPDNIKQWKL--PEGEFLQNLSGHNAIINTLSVNSDGV--LVSGGDN---GSIMFWDWKSG 391 (460)
T ss_pred -----cCCccceeccC--CccchhhccccccceeeeeeeccCce--EEEcCCc---eEEEEEecCcC
Confidence 12334555554 23332333444444555555555653 2222222 25777777664
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.088 Score=58.89 Aligned_cols=159 Identities=11% Similarity=0.140 Sum_probs=96.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
++..+.+--+|+.++..+.+ +.+.+|+...++. .-...|.. +..
T Consensus 75 WVNDiiL~~~~~tlIS~SsD---------------------------------tTVK~W~~~~~~~-~c~stir~--H~D 118 (735)
T KOG0308|consen 75 WVNDIILCGNGKTLISASSD---------------------------------TTVKVWNAHKDNT-FCMSTIRT--HKD 118 (735)
T ss_pred HHhhHHhhcCCCceEEecCC---------------------------------ceEEEeecccCcc-hhHhhhhc--ccc
Confidence 57788889999988888876 3678998855431 11122222 223
Q ss_pred cccceEe-ccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc-------cccccceEEecCCeEEEEE
Q 002209 190 KLNFVTW-SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-------NAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~w-SPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~-------~~~~~~~~wspDg~~l~~~ 261 (953)
++...+. .++...+|. ++=...|++||+++|.++.+........ ...+.+++-.+.|..|+..
T Consensus 119 YVkcla~~ak~~~lvaS---------gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVAS---------GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred hheeeeecccCceeEEe---------cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence 6777776 556555444 2236789999999886633322222110 1112233333445344322
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC-Ccccccc
Q 002209 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLD 338 (953)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~ 338 (953)
. ....|.++|. ++ +...|... .++..+.
T Consensus 190 --------------------------------------g-----------tek~lr~wDprt~~kimkLrGHTdNVr~ll 220 (735)
T KOG0308|consen 190 --------------------------------------G-----------TEKDLRLWDPRTCKKIMKLRGHTDNVRVLL 220 (735)
T ss_pred --------------------------------------C-----------cccceEEeccccccceeeeeccccceEEEE
Confidence 0 1234666776 55 45555555 8889999
Q ss_pred cCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC
Q 002209 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (953)
Q Consensus 339 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g 375 (953)
.++||.+++.++.+. .|.+||+.-
T Consensus 221 ~~dDGt~~ls~sSDg-------------tIrlWdLgq 244 (735)
T KOG0308|consen 221 VNDDGTRLLSASSDG-------------TIRLWDLGQ 244 (735)
T ss_pred EcCCCCeEeecCCCc-------------eEEeeeccc
Confidence 999999999888665 899999973
|
|
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0095 Score=64.46 Aligned_cols=112 Identities=9% Similarity=-0.099 Sum_probs=57.4
Q ss_pred CccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH---cCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHH
Q 002209 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA---RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEA 745 (953)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~---~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~ 745 (953)
..|++|++||..... ....+.......+.. ..+.|+.+|...... .............-..+..
T Consensus 70 ~~pt~iiiHGw~~~~------------~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~-~~Y~~a~~n~~~vg~~la~ 136 (331)
T PF00151_consen 70 SKPTVIIIHGWTGSG------------SSESWIQDMIKALLQKDTGDYNVIVVDWSRGAS-NNYPQAVANTRLVGRQLAK 136 (331)
T ss_dssp TSEEEEEE--TT-TT-------------TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHS-S-HHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCcCCcc------------cchhHHHHHHHHHHhhccCCceEEEEcchhhcc-ccccchhhhHHHHHHHHHH
Confidence 379999999953111 011111222233333 478998855511000 0000000111223344445
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--cccEEEEcccC
Q 002209 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSGA 793 (953)
Q Consensus 746 ~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~~ 793 (953)
.+..|.+...++.++|.|+|||+||.+|..++..... ++..+....|+
T Consensus 137 ~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPA 186 (331)
T PF00151_consen 137 FLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPA 186 (331)
T ss_dssp HHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B
T ss_pred HHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcc
Confidence 5666765545788999999999999999999987755 67777776664
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.17 Score=54.32 Aligned_cols=22 Identities=5% Similarity=-0.111 Sum_probs=17.4
Q ss_pred ccccCCeeeccCCceEEEEEec
Q 002209 455 DLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 455 ~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
.+-++++.|+++|++|+.+...
T Consensus 425 ~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 425 VGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred ccEEEEEEEccCCCEEEEeccc
Confidence 4567889999999998877543
|
|
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.016 Score=58.34 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=39.3
Q ss_pred hHHHHHHHcCcE---EEEcCCCCCCCCCChhhh---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002209 703 TSVLLWLARGFA---ILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (953)
Q Consensus 703 ~~~~~la~~G~~---V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (953)
....+|+++||. |+...+ |.+..... ....-.....+.++++.+.+. ... +|-|+||||||.++-++
T Consensus 20 ~~~~~l~~~GY~~~~vya~ty----g~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~--TGa-kVDIVgHS~G~~iaR~y 92 (219)
T PF01674_consen 20 TLAPYLKAAGYCDSEVYALTY----GSGNGSPSVQNAHMSCESAKQLRAFIDAVLAY--TGA-KVDIVGHSMGGTIARYY 92 (219)
T ss_dssp HHHHHHHHTT--CCCEEEE------S-CCHHTHHHHHHB-HHHHHHHHHHHHHHHHH--HT---EEEEEETCHHHHHHHH
T ss_pred HHHHHHHHcCCCcceeEeccC----CCCCCCCcccccccchhhHHHHHHHHHHHHHh--hCC-EEEEEEcCCcCHHHHHH
Confidence 346689999999 677555 22222111 110122345666666666553 335 89999999999999888
Q ss_pred HHh
Q 002209 777 LAH 779 (953)
Q Consensus 777 a~~ 779 (953)
+..
T Consensus 93 i~~ 95 (219)
T PF01674_consen 93 IKG 95 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.12 Score=55.51 Aligned_cols=142 Identities=12% Similarity=0.019 Sum_probs=77.0
Q ss_pred ceEEEEEc-CCceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 314 TQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
++||++.+ +|+.-.+-.. ..++-+.||-||++|+..+.+. .|.+|.+..- +...+.....
T Consensus 103 g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg-------------~V~vW~l~~l----v~a~~~~~~~ 165 (476)
T KOG0646|consen 103 GNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDG-------------AVLVWLLTDL----VSADNDHSVK 165 (476)
T ss_pred CcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCc-------------cEEEEEEEee----cccccCCCcc
Confidence 57888888 8875444332 6678889999999998777554 7888876410 0000000001
Q ss_pred Cc-cccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCce
Q 002209 391 PI-AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (953)
Q Consensus 391 p~-~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~ 469 (953)
|. .|+.+--.+.++.-.+-|.. .+. +.++.+..+.+||+ ..+..-.-...+.....++.+|-++.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~-~rl----------~TaS~D~t~k~wdl---S~g~LLlti~fp~si~av~lDpae~~ 231 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTN-ARL----------YTASEDRTIKLWDL---SLGVLLLTITFPSSIKAVALDPAERV 231 (476)
T ss_pred ceeeeccCcceeEEEEecCCCcc-ceE----------EEecCCceEEEEEe---ccceeeEEEecCCcceeEEEcccccE
Confidence 11 11111112233333332211 111 12255667788886 44432111234556678899999988
Q ss_pred EEEEEecccCceEEEEEcCCC
Q 002209 470 LVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~ 490 (953)
++.....+ .+|+.+..+
T Consensus 232 ~yiGt~~G----~I~~~~~~~ 248 (476)
T KOG0646|consen 232 VYIGTEEG----KIFQNLLFK 248 (476)
T ss_pred EEecCCcc----eEEeeehhc
Confidence 77765433 566666544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.98 Score=54.87 Aligned_cols=166 Identities=14% Similarity=0.158 Sum_probs=91.5
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
+.+.++.|--|+..|.+....+ +|.++|........+... ..|+...+||||++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G-------------~iilvd~et~~~eivg~v-------------d~GI~aaswS~Dee 122 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALG-------------DIILVDPETLELEIVGNV-------------DNGISAASWSPDEE 122 (1265)
T ss_pred cceEEEEEecccceEEEEecCC-------------cEEEEcccccceeeeeec-------------cCceEEEeecCCCc
Confidence 3566777888888888887443 777777765554443332 25777899999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEec--C-----CC--------------CCCCceEEee-----------------
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQA--E-----PV--------------QGEGPEILHK----------------- 453 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~--~-----~~--------------~g~~~~~l~~----------------- 453 (953)
.+++.+. ...+++..- + +. -|.+.+++..
T Consensus 123 ~l~liT~-------------~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~ 189 (1265)
T KOG1920|consen 123 LLALITG-------------RQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKAL 189 (1265)
T ss_pred EEEEEeC-------------CcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccc
Confidence 8887732 111111110 0 00 0111112210
Q ss_pred ----cccccCCeeeccCCceEEEEEeccc-CceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 454 ----LDLRYGGISWCDDSLALVYESWYKT-RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 454 ----~~~~~~~~~~SpDg~~l~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.+..-.++.|--||++++.+.-... +...+.++|.++. ...+..+... ..+.++|-|.|.+++..-
T Consensus 190 ~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~----Lns~se~~~~-----l~~~LsWkPsgs~iA~iq 260 (1265)
T KOG1920|consen 190 EQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGA----LNSTSEPVEG-----LQHSLSWKPSGSLIAAIQ 260 (1265)
T ss_pred cchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccch----hhcccCcccc-----cccceeecCCCCeEeeee
Confidence 1111234899999999887553222 2235666665531 1111112111 123388999999988776
Q ss_pred eeccCCCcEEEEecCCCC
Q 002209 529 KKENDEGTYILLNGNGAT 546 (953)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~ 546 (953)
...+++ ..+++..+|-+
T Consensus 261 ~~~sd~-~IvffErNGL~ 277 (1265)
T KOG1920|consen 261 CKTSDS-DIVFFERNGLR 277 (1265)
T ss_pred ecCCCC-cEEEEecCCcc
Confidence 544333 56667777654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.31 Score=51.45 Aligned_cols=116 Identities=9% Similarity=0.053 Sum_probs=67.7
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..+..+.|.|--.-+++++.. ...|.+|++.+++. -.|. ++ .-+.++.|+-||
T Consensus 132 rrVg~V~wHPtA~NVLlsag~------------Dn~v~iWnv~tgeali~l~-hp-------------d~i~S~sfn~dG 185 (472)
T KOG0303|consen 132 RRVGLVQWHPTAPNVLLSAGS------------DNTVSIWNVGTGEALITLD-HP-------------DMVYSMSFNRDG 185 (472)
T ss_pred eeEEEEeecccchhhHhhccC------------CceEEEEeccCCceeeecC-CC-------------CeEEEEEeccCC
Confidence 455678899987777776522 34899999996653 3343 33 234689999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE-eeccc-ccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDL-RYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l-~~~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
..++-. .....|.++|. -.+ +...- ..+.+ ....+.|-.+|+ |+.+....-....+-+.|.
T Consensus 186 s~l~Tt-------------ckDKkvRv~dp--r~~-~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 186 SLLCTT-------------CKDKKVRVIDP--RRG-TVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDP 248 (472)
T ss_pred ceeeee-------------cccceeEEEcC--CCC-cEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCc
Confidence 977665 34557888883 332 22111 12222 234578889998 5544432222223444444
Q ss_pred CC
Q 002209 489 GS 490 (953)
Q Consensus 489 ~~ 490 (953)
+.
T Consensus 249 ~n 250 (472)
T KOG0303|consen 249 NN 250 (472)
T ss_pred cc
Confidence 43
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0067 Score=42.43 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=26.1
Q ss_pred eEEeecccccCCeeeccCCceEEEEEecc-cCceEEEE
Q 002209 449 EILHKLDLRYGGISWCDDSLALVYESWYK-TRRTRTWV 485 (953)
Q Consensus 449 ~~l~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~l~~ 485 (953)
++++........+.|||||++|+|.+.+. .+..+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 45666666777899999999999998876 23356774
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.84 Score=46.62 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=31.1
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEecc
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD 383 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~ 383 (953)
...+.++||||+..||++... +.|.++|+.|.+...+..
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~-------------G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAEST-------------GTIRVFDLMGSELFVIPP 82 (282)
T ss_pred chheEEEECCCCcEEEEEcCC-------------CeEEEEecccceeEEcCc
Confidence 455678999999999999744 389999999887766544
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.17 Score=53.12 Aligned_cols=122 Identities=12% Similarity=0.173 Sum_probs=77.6
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..+..++|||.-+.++++..- .+.|.+||+..+..+ .+... ....-+.-+.|+-+-
T Consensus 258 ~SVEDLqWSptE~~vfaScS~------------DgsIrIWDiRs~~~~~~~~~k-----------Ah~sDVNVISWnr~~ 314 (440)
T KOG0302|consen 258 KSVEDLQWSPTEDGVFASCSC------------DGSIRIWDIRSGPKKAAVSTK-----------AHNSDVNVISWNRRE 314 (440)
T ss_pred cchhhhccCCccCceEEeeec------------CceEEEEEecCCCccceeEee-----------ccCCceeeEEccCCc
Confidence 678899999998888877643 348999999854222 22221 111233458898776
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE-EeecccccCCeeeccCCceEEEEEecccCceEEEEEcCC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~-l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
..|++. +..+.+-+||+.....+++.. +.-+...+.++.|+|....++.++..+. +..||-+.++
T Consensus 315 ~lLasG-------------~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~-QitiWDlsvE 380 (440)
T KOG0302|consen 315 PLLASG-------------GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN-QITIWDLSVE 380 (440)
T ss_pred ceeeec-------------CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC-cEEEEEeecc
Confidence 644443 345577888875556665544 4566778899999997666554443332 2467777665
Q ss_pred C
Q 002209 490 S 490 (953)
Q Consensus 490 ~ 490 (953)
.
T Consensus 381 ~ 381 (440)
T KOG0302|consen 381 A 381 (440)
T ss_pred C
Confidence 4
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.86 Score=51.14 Aligned_cols=206 Identities=11% Similarity=0.100 Sum_probs=108.1
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+++.||+-.+. ..-+...++. ..++...|-+--+||+..+ ...+|.+++.++++....+......
T Consensus 35 G~V~IWnyetq-tmVksfeV~~----~PvRa~kfiaRknWiv~Gs---------DD~~IrVfnynt~ekV~~FeAH~Dy- 99 (794)
T KOG0276|consen 35 GDVQIWNYETQ-TMVKSFEVSE----VPVRAAKFIARKNWIVTGS---------DDMQIRVFNYNTGEKVKTFEAHSDY- 99 (794)
T ss_pred CeeEEEecccc-eeeeeeeecc----cchhhheeeeccceEEEec---------CCceEEEEecccceeeEEeeccccc-
Confidence 46788887431 1112223332 2577778888888888843 4778888888887654443322222
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcC
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD 322 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~ 322 (953)
+..++-.|.--.+..+ ..| ..-.+|.++-.
T Consensus 100 ---IR~iavHPt~P~vLts----------------------------------------SDD-------m~iKlW~we~~ 129 (794)
T KOG0276|consen 100 ---IRSIAVHPTLPYVLTS----------------------------------------SDD-------MTIKLWDWENE 129 (794)
T ss_pred ---eeeeeecCCCCeEEec----------------------------------------CCc-------cEEEEeeccCc
Confidence 5555555655444433 111 22334444321
Q ss_pred CceeEeCCC--CcccccccCC-CCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccc
Q 002209 323 GTVKEIGPP--AVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVR 398 (953)
Q Consensus 323 g~~~~l~~~--~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~ 398 (953)
=...+..++ -.+..++|.| |-...|..+.+ ++|.+|.+..... ..+. ++.
T Consensus 130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD-------------rTVKVWslgs~~~nfTl~-------------gHe 183 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLD-------------RTVKVWSLGSPHPNFTLE-------------GHE 183 (794)
T ss_pred eeeeeEEcCcceEEEEEEecCCCccceeeeecc-------------ccEEEEEcCCCCCceeee-------------ccc
Confidence 133333333 6678889999 66666666644 3899998864321 1222 333
Q ss_pred cCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEE
Q 002209 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVY 472 (953)
Q Consensus 399 ~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~ 472 (953)
.|+.-+.+-+-|.+=+..+ . .....+-+||. .+..-.+.|..+..+++.+.|.|.=-.|+.
T Consensus 184 kGVN~Vdyy~~gdkpylIs-g----------aDD~tiKvWDy--Qtk~CV~TLeGHt~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 184 KGVNCVDYYTGGDKPYLIS-G----------ADDLTIKVWDY--QTKSCVQTLEGHTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred cCcceEEeccCCCcceEEe-c----------CCCceEEEeec--chHHHHHHhhcccccceEEEecCCCcEEEE
Confidence 4555555555443322221 1 22335677775 222223445566666666666554333333
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.54 Score=52.15 Aligned_cols=117 Identities=11% Similarity=0.205 Sum_probs=68.4
Q ss_pred cceEEEEEc-CCc-eeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEe------c
Q 002209 313 TTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VREL------C 382 (953)
Q Consensus 313 ~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l------~ 382 (953)
...||+++| .|. ...+... +.+..+..++--..|++...+ +.+..||...+. +..| .
T Consensus 154 g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~-------------g~VEfwDpR~ksrv~~l~~~~~v~ 220 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTED-------------GVVEFWDPRDKSRVGTLDAASSVN 220 (703)
T ss_pred CcceEEEEccccccccccccccccceeeeecCccceEEecccC-------------ceEEEecchhhhhheeeecccccC
Confidence 357899999 774 3333333 566677778777777766533 378888886432 2222 2
Q ss_pred cCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeeccc--ccCC
Q 002209 383 DLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL--RYGG 460 (953)
Q Consensus 383 ~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~--~~~~ 460 (953)
.+++.... ..+.++.|+-||=.++.. ...+.++++|+ -..++-.+-.+.+ .+..
T Consensus 221 s~pg~~~~--------~svTal~F~d~gL~~aVG-------------ts~G~v~iyDL---Ra~~pl~~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 221 SHPGGDAA--------PSVTALKFRDDGLHVAVG-------------TSTGSVLIYDL---RASKPLLVKDHGYELPIKK 276 (703)
T ss_pred CCcccccc--------CcceEEEecCCceeEEee-------------ccCCcEEEEEc---ccCCceeecccCCccceee
Confidence 22222111 235678999998666665 44668999997 4444444443332 3445
Q ss_pred eeeccC
Q 002209 461 ISWCDD 466 (953)
Q Consensus 461 ~~~SpD 466 (953)
+.|-+.
T Consensus 277 l~~~~~ 282 (703)
T KOG2321|consen 277 LDWQDT 282 (703)
T ss_pred eccccc
Confidence 677554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.91 Score=55.11 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=30.3
Q ss_pred cceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecC
Q 002209 313 TTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHR 353 (953)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~ 353 (953)
.+.|.++|. +.....++.- .++...+||||++.+++...+.
T Consensus 89 ~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 89 LGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQ 131 (1265)
T ss_pred CCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCc
Confidence 355667777 6655555544 7888999999999999998543
|
|
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.21 Score=51.81 Aligned_cols=221 Identities=16% Similarity=0.142 Sum_probs=112.6
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
+++.-| .++++++-.. +++.|++|-.|--..+.. ..|..+-.........+.|.|+-++..|.
T Consensus 4 v~t~~G-~v~V~v~G~~------~~~kp~ilT~HDvGlNh~----------scF~~ff~~~~m~~i~~~f~i~Hi~aPGq 66 (283)
T PF03096_consen 4 VETPYG-SVHVTVQGDP------KGNKPAILTYHDVGLNHK----------SCFQGFFNFEDMQEILQNFCIYHIDAPGQ 66 (283)
T ss_dssp EEETTE-EEEEEEESS--------TTS-EEEEE--TT--HH----------HHCHHHHCSHHHHHHHTTSEEEEEE-TTT
T ss_pred eccCce-EEEEEEEecC------CCCCceEEEeccccccch----------HHHHHHhcchhHHHHhhceEEEEEeCCCC
Confidence 344444 6777777432 124799999986211100 01211111122233456799988555332
Q ss_pred CCCCChhhhhh----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC---
Q 002209 724 IGEGDEEANDR----FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR--- 796 (953)
Q Consensus 724 ~G~G~~~~~~~----~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~--- 796 (953)
..|....+.. ..+++.+++..+++++. + +.+..+|--+|+++-+.+|..+|+++-+.|++.+....
T Consensus 67 -e~ga~~~p~~y~yPsmd~LAe~l~~Vl~~f~----l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw 139 (283)
T PF03096_consen 67 -EEGAATLPEGYQYPSMDQLAEMLPEVLDHFG----L--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGW 139 (283)
T ss_dssp -STT-----TT-----HHHHHCTHHHHHHHHT---------EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---H
T ss_pred -CCCcccccccccccCHHHHHHHHHHHHHhCC----c--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccH
Confidence 2233323333 24556666666666652 2 46899999999999999999999999999999875431
Q ss_pred -----------CCCCcCccccc--chhh---------h-------------------h----HHHHHhcCcc-cccCCCC
Q 002209 797 -----------TLTPFGFQNED--RTLW---------E-------------------A----TSTYVEMSPF-MSANKLK 830 (953)
Q Consensus 797 -----------~~~~~~~~~~~--~~~~---------~-------------------~----~~~~~~~sp~-~~~~~i~ 830 (953)
.+...++.... ...| . + .+.|..+..+ .......
T Consensus 140 ~Ew~~~K~~~~~L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~ 219 (283)
T PF03096_consen 140 MEWFYQKLSSWLLYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLG 219 (283)
T ss_dssp HHHHHHHHH-------CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCC
T ss_pred HHHHHHHHhcccccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCC
Confidence 11111111000 0000 0 0 0111122222 2334557
Q ss_pred CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 831 ~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
+|+|++.|+.-.. .+.+.+++.+|.. ....++..+++|=... .+....+.+.+.=|++
T Consensus 220 c~vLlvvG~~Sp~----~~~vv~~ns~Ldp--~~ttllkv~dcGglV~-eEqP~klaea~~lFlQ 277 (283)
T PF03096_consen 220 CPVLLVVGDNSPH----VDDVVEMNSKLDP--TKTTLLKVADCGGLVL-EEQPGKLAEAFKLFLQ 277 (283)
T ss_dssp S-EEEEEETTSTT----HHHHHHHHHHS-C--CCEEEEEETT-TT-HH-HH-HHHHHHHHHHHHH
T ss_pred CCeEEEEecCCcc----hhhHHHHHhhcCc--ccceEEEecccCCccc-ccCcHHHHHHHHHHHc
Confidence 9999999998866 5778899998854 3578999998765442 4555556555555544
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.97 Score=45.99 Aligned_cols=239 Identities=16% Similarity=0.164 Sum_probs=125.6
Q ss_pred cccceEec--cCC-CeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 190 KLNFVTWS--QDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 190 ~~~~~~wS--PDG-~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
......|| ||. -+||..+-.+ .-+...+|.-.+.++++.......+-. ..+.-+.|.||.+-.+-
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~E---e~~Nkvqiv~ld~~s~e~~~~a~fd~~---YP~tK~~wiPd~~g~~p------ 113 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIE---EYNNKVQIVQLDEDSGELVEDANFDHP---YPVTKLMWIPDSKGVYP------ 113 (364)
T ss_pred ceeeeccccCCCcceeEEEeeecc---ccCCeeEEEEEccCCCceeccCCCCCC---CCccceEecCCccccCc------
Confidence 45556777 443 4566544322 233466777777778876554432221 12457788888753320
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE---eC-----CC-Ccccc
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE---IG-----PP-AVYTS 336 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~---l~-----~~-~~~~~ 336 (953)
|++.... ..-+||+++. +++... +. +. +..++
T Consensus 114 ------------------------------dlLATs~--------D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTS 155 (364)
T KOG0290|consen 114 ------------------------------DLLATSS--------DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTS 155 (364)
T ss_pred ------------------------------chhhccc--------CeEEEEeccCcCCceehhhhhccCcccccCCcccc
Confidence 1111111 1235666664 332221 11 11 56788
Q ss_pred cccCC-CCcEEEEEEecCCccccccCCCCCcceEEEeccCce----EEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 337 LDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 337 ~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~----~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
+.|.. |-++|..++.+. +-.+||++.+. .++|..+. ..+..++|+.+|.
T Consensus 156 FDWne~dp~~igtSSiDT-------------TCTiWdie~~~~~~vkTQLIAHD-------------KEV~DIaf~~~s~ 209 (364)
T KOG0290|consen 156 FDWNEVDPNLIGTSSIDT-------------TCTIWDIETGVSGTVKTQLIAHD-------------KEVYDIAFLKGSR 209 (364)
T ss_pred cccccCCcceeEeecccC-------------eEEEEEEeeccccceeeEEEecC-------------cceeEEEeccCcc
Confidence 89987 666666666444 67789998652 23444332 3456788988665
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc---cccCCeeeccCC-ceEEEEEecccCceEEEEEc
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD---LRYGGISWCDDS-LALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~---~~~~~~~~SpDg-~~l~~~~~~~~~~~~l~~~d 487 (953)
.+ |. .++..+.+.++|+..++ ..+.+...+ ...-.++|++.. ++++....+. .++.++|
T Consensus 210 ~~-FA-----------SvgaDGSvRmFDLR~le--HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS---~~V~iLD 272 (364)
T KOG0290|consen 210 DV-FA-----------SVGADGSVRMFDLRSLE--HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS---NKVVILD 272 (364)
T ss_pred ce-EE-----------EecCCCcEEEEEecccc--cceEEecCCCCCCcceeeccCcCCchHHhhhhcCC---ceEEEEE
Confidence 43 33 12456678888862111 122232222 223346677643 4444322221 2677777
Q ss_pred CCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 488 PGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
..-. ..+..-...+...+.+ ++|.|-.+.-+...
T Consensus 273 iR~P-~tpva~L~~H~a~VNg------IaWaPhS~~hicta 306 (364)
T KOG0290|consen 273 IRVP-CTPVARLRNHQASVNG------IAWAPHSSSHICTA 306 (364)
T ss_pred ecCC-CcceehhhcCcccccc------eEecCCCCceeeec
Confidence 7655 2444444555555555 88999877655554
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.1 Score=50.21 Aligned_cols=159 Identities=11% Similarity=-0.009 Sum_probs=96.7
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
......++|||+.++.... +.....++++|..+++.......... -...+.+|+|+.++...
T Consensus 117 ~P~~~~~~~~~~~vYV~n~------~~~~~~vsvid~~t~~~~~~~~vG~~-----P~~~a~~p~g~~vyv~~------- 178 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANA------GNGNNTVSVIDAATNKVTATIPVGNT-----PTGVAVDPDGNKVYVTN------- 178 (381)
T ss_pred CCceEEECCCCCEEEEEec------ccCCceEEEEeCCCCeEEEEEecCCC-----cceEEECCCCCeEEEEe-------
Confidence 5677899999999887542 11468899999988776544322221 23688999999888761
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE------eCCCCcccccccCCC
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE------IGPPAVYTSLDPSPD 342 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~------l~~~~~~~~~~~SpD 342 (953)
...+.|..++. +-...+ +........+.++||
T Consensus 179 -----------------------------------------~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~ 217 (381)
T COG3391 179 -----------------------------------------SDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPD 217 (381)
T ss_pred -----------------------------------------cCCCeEEEEeCCCcceeccccccccccCCCCceEEECCC
Confidence 02345667776 333332 222244567889999
Q ss_pred CcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 343 G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
|+++....... ....+...|...+.......... .. ....+..+|+|+.++.. .
T Consensus 218 g~~~yV~~~~~----------~~~~v~~id~~~~~v~~~~~~~~----------~~-~~~~v~~~p~g~~~yv~-~---- 271 (381)
T COG3391 218 GNRVYVANDGS----------GSNNVLKIDTATGNVTATDLPVG----------SG-APRGVAVDPAGKAAYVA-N---- 271 (381)
T ss_pred CCEEEEEeccC----------CCceEEEEeCCCceEEEeccccc----------cC-CCCceeECCCCCEEEEE-e----
Confidence 99887765332 12367777777655444311110 00 23467899999865544 1
Q ss_pred CCcccccccCCeEEEEec
Q 002209 423 GDAKVEVTPRDIIYTQQA 440 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~ 440 (953)
...+.+.++|.
T Consensus 272 -------~~~~~V~vid~ 282 (381)
T COG3391 272 -------SQGGTVSVIDG 282 (381)
T ss_pred -------cCCCeEEEEeC
Confidence 12456777773
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.1 Score=54.65 Aligned_cols=102 Identities=17% Similarity=0.192 Sum_probs=59.3
Q ss_pred ceEEecCCCCCCc-ceeeeeceEEEEccCCCCCC-ceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEE
Q 002209 145 AGLRIDGKCNTRS-RMSFYTGIGIHQLFPDGKLG-QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVW 222 (953)
Q Consensus 145 ~~~~~~~~~~~~~-~~~~~~~i~i~~~~~~g~~~-~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~ 222 (953)
.++.++|...++. ..-...+|++|...+ |.-. ..+.+++++ ..+....|||.-+.++++..- ...|.
T Consensus 215 y~LdWSp~~~g~LlsGDc~~~I~lw~~~~-g~W~vd~~Pf~gH~--~SVEDLqWSptE~~vfaScS~--------DgsIr 283 (440)
T KOG0302|consen 215 YGLDWSPIKTGRLLSGDCVKGIHLWEPST-GSWKVDQRPFTGHT--KSVEDLQWSPTEDGVFASCSC--------DGSIR 283 (440)
T ss_pred eeeecccccccccccCccccceEeeeecc-CceeecCccccccc--cchhhhccCCccCceEEeeec--------CceEE
Confidence 4456666444322 122336899998855 4322 234555533 468899999998888876542 34566
Q ss_pred EEECCCCc--eeecccCCCccccccccceEEecCCeEEEEE
Q 002209 223 VADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 223 ~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
++|+..+. +.-.+.. .++.+.-+.|+-+-..|++.
T Consensus 284 IWDiRs~~~~~~~~~kA----h~sDVNVISWnr~~~lLasG 320 (440)
T KOG0302|consen 284 IWDIRSGPKKAAVSTKA----HNSDVNVISWNRREPLLASG 320 (440)
T ss_pred EEEecCCCccceeEeec----cCCceeeEEccCCcceeeec
Confidence 66666652 2222211 22337788898776666654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.11 Score=55.89 Aligned_cols=60 Identities=7% Similarity=0.105 Sum_probs=42.5
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
+.+....=+|+|.+|+- +....+||+|.+.+|....+....-.. +.-+.|+.||..|+.+
T Consensus 82 g~v~al~s~n~G~~l~a---------g~i~g~lYlWelssG~LL~v~~aHYQ~----ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLA---------GTISGNLYLWELSSGILLNVLSAHYQS----ITCLKFSDDGSHIITG 141 (476)
T ss_pred cceeeeecCCCceEEEe---------ecccCcEEEEEeccccHHHHHHhhccc----eeEEEEeCCCcEEEec
Confidence 34677788999988775 224679999999999864443222211 5678899999998865
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.37 Score=49.74 Aligned_cols=85 Identities=13% Similarity=0.177 Sum_probs=58.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+-|+|.|+.. +. -...+.+ .|..++...+-|+.-+|+.+.. ++..|.++++++.....+..+-+ +.
T Consensus 115 GvIrVid~~~-~~--~~~~~~g--hG~sINeik~~p~~~qlvls~S--------kD~svRlwnI~~~~Cv~VfGG~e-gH 180 (385)
T KOG1034|consen 115 GVIRVIDVVS-GQ--CSKNYRG--HGGSINEIKFHPDRPQLVLSAS--------KDHSVRLWNIQTDVCVAVFGGVE-GH 180 (385)
T ss_pred eEEEEEecch-hh--hccceec--cCccchhhhcCCCCCcEEEEec--------CCceEEEEeccCCeEEEEecccc-cc
Confidence 5688888743 21 1233433 4457999999999877777543 35678888888888877765433 23
Q ss_pred cccccceEEecCCeEEEEE
Q 002209 243 NAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~ 261 (953)
...+-++.|++||.+|+..
T Consensus 181 rdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred cCcEEEEEEcCCCCeeecc
Confidence 3336689999999988855
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.33 Score=49.12 Aligned_cols=105 Identities=12% Similarity=0.121 Sum_probs=64.8
Q ss_pred cccccccCC--CCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccC
Q 002209 333 VYTSLDPSP--DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 333 ~~~~~~~Sp--DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
..++-+||| ||..++.+. ..+++-||+.+-. .-.|.+ .....++++.|.|+
T Consensus 172 ~ftsg~WspHHdgnqv~tt~--------------d~tl~~~D~RT~~~~~sI~d------------AHgq~vrdlDfNpn 225 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATTS--------------DSTLQFWDLRTMKKNNSIED------------AHGQRVRDLDFNPN 225 (370)
T ss_pred eecccccCCCCccceEEEeC--------------CCcEEEEEccchhhhcchhh------------hhcceeeeccCCCC
Confidence 456778999 999998887 2378899987321 111111 11134578889998
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCC-CceEEeecccccCCeeeccCCceEEEEEecc
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-GPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~-~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
-+.++.. . +...-|.+||. .... ....+..+...+..+.|.|--..|+.+...+
T Consensus 226 kq~~lvt--~----------gDdgyvriWD~--R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 226 KQHILVT--C----------GDDGYVRIWDT--RKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred ceEEEEE--c----------CCCccEEEEec--cCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 8866554 1 33456778885 2222 2334556666667788888777776665433
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.033 Score=63.51 Aligned_cols=150 Identities=13% Similarity=0.068 Sum_probs=82.8
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCcc----chHHHHHHHcCcEEE
Q 002209 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIG----STSVLLWLARGFAIL 716 (953)
Q Consensus 641 ~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~la~~G~~V~ 716 (953)
.+.+....+..+..|++.-.+ ++. ..|+||++.|||..+.-......-||......+ ......|.+. ..+|
T Consensus 15 yl~~~~~~~~~lfyw~~~s~~-~~~---~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an~l 89 (415)
T PF00450_consen 15 YLPVNDNENAHLFYWFFESRN-DPE---DDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKF-ANLL 89 (415)
T ss_dssp EEEECTTTTEEEEEEEEE-SS-GGC---SS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGT-SEEE
T ss_pred EEecCCCCCcEEEEEEEEeCC-CCC---CccEEEEecCCceeccccccccccCceEEeecccccccccccccccc-cceE
Confidence 344544566788888885543 333 479999999999876544333334443333100 0111234444 4555
Q ss_pred EcCCCCCCCCCChhhhhh---hHHHHHHHHHHHHHHHH-HcCCCCCCcEEEEEeChHHHHHHHHHH----hC------CC
Q 002209 717 GGPTTPIIGEGDEEANDR---FVEQLVACAEAAVEEVV-RRGVAHPSKIAVGGHSYGAFMTANLLA----HA------PH 782 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~---~~~~~~~D~~~~~~~l~-~~~~~d~~~i~l~G~S~GG~~a~~~a~----~~------p~ 782 (953)
.+|..-.+|+........ ......+|+..++.... ..+.....++.|+|.||||..+-.+|. .. +-
T Consensus 90 ~iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~i 169 (415)
T PF00450_consen 90 FIDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKI 169 (415)
T ss_dssp EE--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTS
T ss_pred EEeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhcccccccccc
Confidence 545333345544433322 23556677777766543 345556679999999999998766554 22 22
Q ss_pred cccEEEEcccCCC
Q 002209 783 LFCCGIARSGAYN 795 (953)
Q Consensus 783 ~~~a~v~~~~~~d 795 (953)
.++++++..|+.+
T Consensus 170 nLkGi~IGng~~d 182 (415)
T PF00450_consen 170 NLKGIAIGNGWID 182 (415)
T ss_dssp EEEEEEEESE-SB
T ss_pred ccccceecCcccc
Confidence 4889999888755
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.042 Score=58.55 Aligned_cols=56 Identities=27% Similarity=0.262 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcc
Q 002209 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (953)
Q Consensus 736 ~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (953)
.++...|....+..|++.......+|.++|.||||++++|+=.++|+.+.++.+.+
T Consensus 144 seQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaS 199 (492)
T KOG2183|consen 144 SEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAAS 199 (492)
T ss_pred HHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhcc
Confidence 46788999999999988766667899999999999999999999999887776554
|
|
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.093 Score=52.36 Aligned_cols=146 Identities=15% Similarity=0.118 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----cccEEEEcccCCCCCCC-C------cCccccc
Q 002209 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-----LFCCGIARSGAYNRTLT-P------FGFQNED 807 (953)
Q Consensus 740 ~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~~~~d~~~~-~------~~~~~~~ 807 (953)
..=+..++.+|.+++.+ .++-++||||||....+++..+.. .+.-.|.+++.++.... + ......
T Consensus 119 s~wlk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~v~~~~~- 195 (288)
T COG4814 119 SKWLKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTDVLKDGP- 195 (288)
T ss_pred HHHHHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchheeeccCc-
Confidence 34456788999998766 489999999999999988876521 36667777776661111 1 001000
Q ss_pred chhhhhHHHHHhcCcccccCCC--CCcEEEEEeCCC------CCCCCchHHHHHHHHHHHhCCCcEEEEEeCC--CCccC
Q 002209 808 RTLWEATSTYVEMSPFMSANKL--KKPILLVHGEED------NNSGTLTMQSDRFFNALKGHGALCRLVILPF--ESHGY 877 (953)
Q Consensus 808 ~~~~~~~~~~~~~sp~~~~~~i--~~P~Li~~G~~D------~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~H~~ 877 (953)
+..-.....|.... ...+ +.-+|++.|+.| -.|| ...+...+..+.+.+..+.-.+|+| +-|.-
T Consensus 196 ~~~~t~y~~y~~~n----~k~v~~~~evl~IaGDl~dg~~tDG~Vp--~assls~~~lf~~~~ksy~e~~~~Gk~a~Hs~ 269 (288)
T COG4814 196 GLIKTPYYDYIAKN----YKKVSPNTEVLLIAGDLDDGKQTDGAVP--WASSLSIYHLFKKNGKSYIESLYKGKDARHSK 269 (288)
T ss_pred cccCcHHHHHHHhc----ceeCCCCcEEEEEecccccCCcCCCcee--chHhHHHHHHhccCcceeEEEeeeCCcchhhc
Confidence 00000011111111 1111 356899999764 5677 7888888888888877776667776 46754
Q ss_pred CCcccHHHHHHHHHHHHHH
Q 002209 878 AARESIMHVLWETDRWLQK 896 (953)
Q Consensus 878 ~~~~~~~~~~~~i~~fl~~ 896 (953)
. .+ ...+.+.+..||.+
T Consensus 270 l-he-n~~v~~yv~~FLw~ 286 (288)
T COG4814 270 L-HE-NPTVAKYVKNFLWE 286 (288)
T ss_pred c-CC-ChhHHHHHHHHhhc
Confidence 2 22 34566777777653
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=1.1 Score=50.17 Aligned_cols=206 Identities=11% Similarity=-0.013 Sum_probs=120.4
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
......+++|+.++-... ....+.++|.++.+...-...+.. ...++++|||+.++++-...
T Consensus 76 p~~i~v~~~~~~vyv~~~--------~~~~v~vid~~~~~~~~~~~vG~~-----P~~~~~~~~~~~vYV~n~~~----- 137 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTG--------DSNTVSVIDTATNTVLGSIPVGLG-----PVGLAVDPDGKYVYVANAGN----- 137 (381)
T ss_pred ccceeeCCCCCeEEEecC--------CCCeEEEEcCcccceeeEeeeccC-----CceEEECCCCCEEEEEeccc-----
Confidence 455678888987765432 256888888666544332222221 44789999999999871100
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEe-CCCCcccccccCCCCcEEEE
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI-GPPAVYTSLDPSPDEKYILI 348 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l-~~~~~~~~~~~SpDG~~l~~ 348 (953)
....++++|. +++.... ..+......+++|||++++.
T Consensus 138 -----------------------------------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv 176 (381)
T COG3391 138 -----------------------------------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYV 176 (381)
T ss_pred -----------------------------------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEE
Confidence 1246777777 5544333 22223478899999998887
Q ss_pred EEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (953)
.... .+.+.+.|.++....+ ...... .....++..+.++|||+.++.....
T Consensus 177 ~~~~------------~~~v~vi~~~~~~v~~-~~~~~~-------~~~~~~P~~i~v~~~g~~~yV~~~~--------- 227 (381)
T COG3391 177 TNSD------------DNTVSVIDTSGNSVVR-GSVGSL-------VGVGTGPAGIAVDPDGNRVYVANDG--------- 227 (381)
T ss_pred EecC------------CCeEEEEeCCCcceec-cccccc-------cccCCCCceEEECCCCCEEEEEecc---------
Confidence 7622 2377788876655443 221100 0112345679999999976554111
Q ss_pred cccCCeEEEEecCCCCCCCceEE--eecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 429 VTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 429 ~~~~~~l~~~d~~~~~g~~~~~l--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
+....+..++. ..+..... .........+..+|+|+.++...... ..+.++|..+.
T Consensus 228 -~~~~~v~~id~---~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~---~~V~vid~~~~ 285 (381)
T COG3391 228 -SGSNNVLKIDT---ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG---GTVSVIDGATD 285 (381)
T ss_pred -CCCceEEEEeC---CCceEEEeccccccCCCCceeECCCCCEEEEEecCC---CeEEEEeCCCC
Confidence 11346777774 33332222 11111345688999999887765442 26888887663
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.82 E-value=1.8 Score=48.50 Aligned_cols=194 Identities=17% Similarity=0.181 Sum_probs=101.7
Q ss_pred ccceEe-ccCCCeEEEEEeeccccCCCCcceEEEEECCC-Cc-eeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 191 LNFVTW-SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GK-ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 191 ~~~~~w-SPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~-g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
+....+ ++++..++... ......+.+++..+ .. ...+..+... +..+.|+|+++.++....
T Consensus 112 ~~~~~~~~~~~~~~~~~~-------~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~---- 175 (466)
T COG2319 112 VSKLALSSPDGNSILLAS-------SSLDGTVKLWDLSTPGKLIRTLEGHSES-----VTSLAFSPDGKLLASGSS---- 175 (466)
T ss_pred eeeEEEECCCcceEEecc-------CCCCccEEEEEecCCCeEEEEEecCccc-----EEEEEECCCCCEEEecCC----
Confidence 444555 88888444322 11234667777665 33 3333333332 567999999995554300
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-CcccccccCCCCc
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEK 344 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDG~ 344 (953)
....+..+++ .+.. ..+... ..+..++|+|+|+
T Consensus 176 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 211 (466)
T COG2319 176 --------------------------------------------LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG 211 (466)
T ss_pred --------------------------------------------CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc
Confidence 0133445555 4333 333333 6788899999999
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceEEE--eccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE--LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~--l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
.++..... .+.+.+||...+.... +..+. ... -..|+|++..++..
T Consensus 212 ~~~~~~~~------------d~~i~~wd~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~------ 259 (466)
T COG2319 212 LLIASGSS------------DGTIRLWDLSTGKLLRSTLSGHS-------------DSV-VSSFSPDGSLLASG------ 259 (466)
T ss_pred eEEEEecC------------CCcEEEEECCCCcEEeeecCCCC-------------cce-eEeECCCCCEEEEe------
Confidence 44444111 2366688766332222 21111 010 11699999433322
Q ss_pred CCcccccccCCeEEEEecCCCCCCCc--eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGP--EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~--~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
.....+.++++ ..... ..+..+...+..+.|+|++..++....+ ....+| +..+
T Consensus 260 -------~~d~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d--~~~~~~--~~~~ 315 (466)
T COG2319 260 -------SSDGTIRLWDL---RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD--GTVRLW--DLET 315 (466)
T ss_pred -------cCCCcEEEeee---cCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCC--CcEEEE--EcCC
Confidence 33456777775 22221 2222234455667899998888874433 224666 5554
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.92 Score=46.82 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=64.8
Q ss_pred CCCeEEEEEeeccccCCCCcceEEEEECCCCce---eecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCC
Q 002209 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA---RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLV 275 (953)
Q Consensus 199 DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~---~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 275 (953)
+-..|||-. ...++|-++|+...+. .-+-.+... +.-++..-+|..|+.++.
T Consensus 147 ~k~~LafPg--------~k~GqvQi~dL~~~~~~~p~~I~AH~s~-----Iacv~Ln~~Gt~vATaSt------------ 201 (346)
T KOG2111|consen 147 NKSLLAFPG--------FKTGQVQIVDLASTKPNAPSIINAHDSD-----IACVALNLQGTLVATAST------------ 201 (346)
T ss_pred CceEEEcCC--------CccceEEEEEhhhcCcCCceEEEcccCc-----eeEEEEcCCccEEEEecc------------
Confidence 345677743 3456788888776544 222222221 556778889998886510
Q ss_pred CCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC---CcccccccCCCCcEEEEEE
Q 002209 276 PLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP---AVYTSLDPSPDEKYILISS 350 (953)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~---~~~~~~~~SpDG~~l~~~~ 350 (953)
...-|.+.|. +| ..+.+..+ ..+..++||||+.+|++++
T Consensus 202 ------------------------------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS 245 (346)
T KOG2111|consen 202 ------------------------------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS 245 (346)
T ss_pred ------------------------------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc
Confidence 1123445576 66 33444333 7788999999999999999
Q ss_pred ecCCccccccCCCCCcceEEEeccC
Q 002209 351 IHRPYSFIVPCGRFPRQVGVWTTDG 375 (953)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~~d~~g 375 (953)
..+ ++.++.+..
T Consensus 246 dKg-------------TlHiF~l~~ 257 (346)
T KOG2111|consen 246 DKG-------------TLHIFSLRD 257 (346)
T ss_pred CCC-------------eEEEEEeec
Confidence 554 777777753
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.092 Score=54.10 Aligned_cols=213 Identities=17% Similarity=0.166 Sum_probs=114.0
Q ss_pred CCcceeeeeceEEEEccCCCCCCc-eeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceee
Q 002209 155 TRSRMSFYTGIGIHQLFPDGKLGQ-EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP 233 (953)
Q Consensus 155 ~~~~~~~~~~i~i~~~~~~g~~~~-~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 233 (953)
.......+..|.|||.++ .. .+.|++++ +.+-...+ |.+.|+. ++....+.++|.++|++..
T Consensus 209 kiVSGlrDnTikiWD~n~----~~c~~~L~GHt--GSVLCLqy--d~rviis---------GSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIWDKNS----LECLKILTGHT--GSVLCLQY--DERVIVS---------GSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred hhhcccccCceEEecccc----HHHHHhhhcCC--CcEEeeec--cceEEEe---------cCCCceEEEEeccCCchhh
Confidence 333344456789999843 22 34455544 23444444 5554443 4457788899999998754
Q ss_pred cccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhcc
Q 002209 234 LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYAT 313 (953)
Q Consensus 234 lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 313 (953)
..-+.-.. +-.+.++ +|-.+-.+ .| ..
T Consensus 272 tlihHcea----VLhlrf~-ng~mvtcS-----------------------------------------kD-------rs 298 (499)
T KOG0281|consen 272 TLIHHCEA----VLHLRFS-NGYMVTCS-----------------------------------------KD-------RS 298 (499)
T ss_pred HHhhhcce----eEEEEEe-CCEEEEec-----------------------------------------CC-------ce
Confidence 43322211 3355554 34222222 01 12
Q ss_pred ceEEEEEc-CC-ceeE-eCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcc
Q 002209 314 TQLVLVSL-DG-TVKE-IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAE 388 (953)
Q Consensus 314 ~~l~~~~~-~g-~~~~-l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~ 388 (953)
..+|.++. +. +.++ +... ..+..+.| |.|+|+.++.++ +|.+|+.++.+. +.|..+..
T Consensus 299 iaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDR-------------TikvW~~st~efvRtl~gHkR-- 361 (499)
T KOG0281|consen 299 IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR-------------TIKVWSTSTCEFVRTLNGHKR-- 361 (499)
T ss_pred eEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCc-------------eEEEEeccceeeehhhhcccc--
Confidence 23444443 21 2222 2223 55666666 467888877554 899999986654 44444321
Q ss_pred cCCccccccccCccceee-ccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCC
Q 002209 389 DIPIAFNSVRKGMRSINW-RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDS 467 (953)
Q Consensus 389 ~~p~~~~~~~~~~~~~~w-spDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg 467 (953)
+++- --.|+.++-. +..+.|.+||+ ..|.-.+.|.+++.-+..+.| |.
T Consensus 362 --------------GIAClQYr~rlvVSG-------------SSDntIRlwdi--~~G~cLRvLeGHEeLvRciRF--d~ 410 (499)
T KOG0281|consen 362 --------------GIACLQYRDRLVVSG-------------SSDNTIRLWDI--ECGACLRVLEGHEELVRCIRF--DN 410 (499)
T ss_pred --------------cceehhccCeEEEec-------------CCCceEEEEec--cccHHHHHHhchHHhhhheee--cC
Confidence 1111 0112222111 44668889986 334445667777777777888 67
Q ss_pred ceEEEEEecccCceEEEEEc
Q 002209 468 LALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d 487 (953)
++|+..+.++. .++|-+.
T Consensus 411 krIVSGaYDGk--ikvWdl~ 428 (499)
T KOG0281|consen 411 KRIVSGAYDGK--IKVWDLQ 428 (499)
T ss_pred ceeeeccccce--EEEEecc
Confidence 88888766553 2555544
|
|
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.024 Score=49.86 Aligned_cols=60 Identities=27% Similarity=0.277 Sum_probs=47.2
Q ss_pred CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 830 ~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
..|+|+++++.|..+| ++.++++.+.+... +++.+++.||+... ....-+.+.+.+||..
T Consensus 34 ~~piL~l~~~~Dp~TP--~~~a~~~~~~l~~s----~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 34 APPILVLGGTHDPVTP--YEGARAMAARLPGS----RLVTVDGAGHGVYA-GGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCEEEEecCcCCCCc--HHHHHHHHHHCCCc----eEEEEeccCcceec-CCChHHHHHHHHHHHc
Confidence 4899999999999988 99999998888753 89999999999753 3334555566666653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=1.7 Score=49.47 Aligned_cols=61 Identities=16% Similarity=0.335 Sum_probs=34.9
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc-eeecccCCCccccccccceEEecCCeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
..+..+.|.-+.+.|-. + +.+| -|.+|-+-.|. ....+..-+ +..+.+..|..||+.|.+.
T Consensus 72 ~sV~vvTWNe~~QKLTt-S------Dt~G--lIiVWmlykgsW~EEMiNnRn---KSvV~SmsWn~dG~kIcIv 133 (1189)
T KOG2041|consen 72 ASVMVVTWNENNQKLTT-S------DTSG--LIIVWMLYKGSWCEEMINNRN---KSVVVSMSWNLDGTKICIV 133 (1189)
T ss_pred ceEEEEEeccccccccc-c------CCCc--eEEEEeeecccHHHHHhhCcC---ccEEEEEEEcCCCcEEEEE
Confidence 36778889866665543 2 2333 33333333333 333433222 2236789999999998876
|
|
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.019 Score=58.26 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC----CcccEEEEcccC
Q 002209 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP----HLFCCGIARSGA 793 (953)
Q Consensus 740 ~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p----~~~~a~v~~~~~ 793 (953)
+.....|++|+.+.-.-.+.+|.+.|||.||++|.++++..+ +++..+.+..|+
T Consensus 65 ~~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgP 122 (224)
T PF11187_consen 65 TPQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGP 122 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCC
Confidence 344456677776542112346999999999999999998843 467777766653
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.8 Score=44.11 Aligned_cols=166 Identities=14% Similarity=0.169 Sum_probs=93.4
Q ss_pred ecccccCCeeeccCCce-EEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeec
Q 002209 453 KLDLRYGGISWCDDSLA-LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKE 531 (953)
Q Consensus 453 ~~~~~~~~~~~SpDg~~-l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~ 531 (953)
....+.-.++++|-..+ ++|+...+ . -.+++|.++. .++..+........|+. -.|||||++|+...++.
T Consensus 65 ~lpaR~Hgi~~~p~~~ravafARrPG-t--f~~vfD~~~~-~~pv~~~s~~~RHfyGH-----Gvfs~dG~~LYATEndf 135 (366)
T COG3490 65 ALPARGHGIAFHPALPRAVAFARRPG-T--FAMVFDPNGA-QEPVTLVSQEGRHFYGH-----GVFSPDGRLLYATENDF 135 (366)
T ss_pred ecccccCCeecCCCCcceEEEEecCC-c--eEEEECCCCC-cCcEEEecccCceeecc-----cccCCCCcEEEeecCCC
Confidence 33444556889998655 66664333 2 5678888876 46666665555555653 45999999999887654
Q ss_pred cCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecC------
Q 002209 532 NDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESK------ 605 (953)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------ 605 (953)
+ .++..|-+||... ...++-+-+. .. -.-++..+.+||+++++.-...
T Consensus 136 d----------------~~rGViGvYd~r~-~fqrvgE~~t--------~G-iGpHev~lm~DGrtlvvanGGIethpdf 189 (366)
T COG3490 136 D----------------PNRGVIGVYDARE-GFQRVGEFST--------HG-IGPHEVTLMADGRTLVVANGGIETHPDF 189 (366)
T ss_pred C----------------CCCceEEEEeccc-ccceeccccc--------CC-cCcceeEEecCCcEEEEeCCceeccccc
Confidence 2 2344577788753 2233211110 00 0112345777888777653321
Q ss_pred --------CCCceEEEEECCCCCeeEEecCCCCCC-CcCCCceEEEEEEcCCCcEEEEEEEc
Q 002209 606 --------TENTQYYIQSWPDKKSCQITDFPHPYP-QLASLQKELIKYQRKDGVQLSATLYL 658 (953)
Q Consensus 606 --------~~p~~l~~~~~~~g~~~~Lt~~~~~~~-~~~~~~~~~~~~~~~dg~~~~~~l~~ 658 (953)
.+.+.+.+++..+|+... + +.++ ....+....+.+. .||..+.+.-|.
T Consensus 190 gR~~lNldsMePSlvlld~atG~lie--k--h~Lp~~l~~lSiRHld~g-~dgtvwfgcQy~ 246 (366)
T COG3490 190 GRTELNLDSMEPSLVLLDAATGNLIE--K--HTLPASLRQLSIRHLDIG-RDGTVWFGCQYR 246 (366)
T ss_pred CccccchhhcCccEEEEeccccchhh--h--ccCchhhhhcceeeeeeC-CCCcEEEEEEee
Confidence 123456666656664322 1 1233 2334445555554 688888888776
|
|
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.021 Score=61.99 Aligned_cols=125 Identities=26% Similarity=0.300 Sum_probs=79.3
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHc-CcEEEEcCCC-CCCC---C
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-GFAILGGPTT-PIIG---E 726 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G~~V~~~~~~-~~~G---~ 726 (953)
++..+|.|. .++.+ .-|+|+++||.+.++.++-.+-.| ..|++. ..+|+..+|+ |..| .
T Consensus 121 LYlNVW~P~-~~p~n---~tVlVWiyGGGF~sGt~SLdvYdG------------k~la~~envIvVs~NYRvG~FGFL~l 184 (601)
T KOG4389|consen 121 LYLNVWAPA-ADPYN---LTVLVWIYGGGFYSGTPSLDVYDG------------KFLAAVENVIVVSMNYRVGAFGFLYL 184 (601)
T ss_pred eEEEEeccC-CCCCC---ceEEEEEEcCccccCCcceeeecc------------ceeeeeccEEEEEeeeeeccceEEec
Confidence 566777784 23333 459999999977776655444432 234544 4555555553 2223 2
Q ss_pred -CChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCC--CcccEEEEcccCCC
Q 002209 727 -GDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAP--HLFCCGIARSGAYN 795 (953)
Q Consensus 727 -G~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p--~~~~a~v~~~~~~d 795 (953)
|..+.+. ....-|..-|+.|+.++ -.-|+++|.|+|.|+|+.-+..=+...+ .+|+-+|+.+|..+
T Consensus 185 ~~~~eaPG---NmGl~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 185 PGHPEAPG---NMGLLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred CCCCCCCC---ccchHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 3333333 34567888899999876 2358999999999999976643332221 36888898888654
|
|
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.094 Score=50.49 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=46.3
Q ss_pred HHHHHHcCcEEEEcCCCCCCCCCCh-hhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 705 VLLWLARGFAILGGPTTPIIGEGDE-EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 705 ~~~la~~G~~V~~~~~~~~~G~G~~-~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
...-.+.||.|+..+....+-+-.+ ..+..+....++.+.-+..+++.. ..++.++++-||+||.+++.++.+.|+
T Consensus 137 i~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 137 IKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred HHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCC
Confidence 3444578999887443211111111 112233344455555555555443 346789999999999999999999875
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.063 Score=60.75 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=50.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+.|.+||+.. + ...+.|+++. ..+..+.|+|=|.+.|- +.-..++-+||..-..+.........
T Consensus 92 gtiK~wDlee-A--k~vrtLtgh~--~~~~sv~f~P~~~~~a~---------gStdtd~~iwD~Rk~Gc~~~~~s~~~-- 155 (825)
T KOG0267|consen 92 GTIKVWDLEE-A--KIVRTLTGHL--LNITSVDFHPYGEFFAS---------GSTDTDLKIWDIRKKGCSHTYKSHTR-- 155 (825)
T ss_pred Cceeeeehhh-h--hhhhhhhccc--cCcceeeeccceEEecc---------ccccccceehhhhccCceeeecCCcc--
Confidence 4689999953 1 2234454433 26777889998876532 33456777777664334433332221
Q ss_pred cccccceEEecCCeEEEEE
Q 002209 243 NAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~ 261 (953)
.+..+.++|||++++..
T Consensus 156 --vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 156 --VVDVLRLSPDGRWVASG 172 (825)
T ss_pred --eeEEEeecCCCceeecc
Confidence 26688999999999854
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.1 Score=45.77 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=28.3
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEE-ecc
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCD 383 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~-l~~ 383 (953)
+.+....|-.-|+.++..+-++ .--+||++++++.. |+.
T Consensus 273 ~vV~a~dWL~gg~Q~vTaSWDR-------------TAnlwDVEtge~v~~LtG 312 (481)
T KOG0300|consen 273 AVVSACDWLAGGQQMVTASWDR-------------TANLWDVETGEVVNILTG 312 (481)
T ss_pred cceEehhhhcCcceeeeeeccc-------------cceeeeeccCceeccccC
Confidence 5566678888999998887443 66689999877654 443
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.18 Score=66.90 Aligned_cols=75 Identities=11% Similarity=0.018 Sum_probs=49.3
Q ss_pred HcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---CCCcccE
Q 002209 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH---APHLFCC 786 (953)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~---~p~~~~a 786 (953)
..++.|+.++. .|++..............++.+.++.+. ...++.++||||||.++..++.+ .++.+..
T Consensus 1092 ~~~~~v~~~~~---~g~~~~~~~~~~l~~la~~~~~~i~~~~-----~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~ 1163 (1296)
T PRK10252 1092 DPQWSIYGIQS---PRPDGPMQTATSLDEVCEAHLATLLEQQ-----PHGPYHLLGYSLGGTLAQGIAARLRARGEEVAF 1163 (1296)
T ss_pred CCCCcEEEEEC---CCCCCCCCCCCCHHHHHHHHHHHHHhhC-----CCCCEEEEEechhhHHHHHHHHHHHHcCCceeE
Confidence 45688888443 4554432223345666666666555431 12479999999999999999885 4677777
Q ss_pred EEEccc
Q 002209 787 GIARSG 792 (953)
Q Consensus 787 ~v~~~~ 792 (953)
++++.+
T Consensus 1164 l~l~~~ 1169 (1296)
T PRK10252 1164 LGLLDT 1169 (1296)
T ss_pred EEEecC
Confidence 777654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.07 E-value=4.6 Score=41.58 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=30.2
Q ss_pred ceEEEEEc-CCceeEe-CC---C--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE
Q 002209 314 TQLVLVSL-DGTVKEI-GP---P--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l-~~---~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~ 378 (953)
..|+.+|. +|+...- .. + ..........+|+.+++... .+.|+.+|+.++..
T Consensus 86 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 86 GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-------------SGKLVALDPKTGKL 144 (238)
T ss_dssp SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-------------CSEEEEEETTTTEE
T ss_pred eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-------------cCcEEEEecCCCcE
Confidence 47888997 8865443 11 1 12223334445777777662 23889999886554
|
... |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.06 E-value=3.6 Score=42.48 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=42.9
Q ss_pred eeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeec--ccCCCccccccccceEEecCCeE
Q 002209 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNNSTL 257 (953)
Q Consensus 180 ~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~~~~wspDg~~ 257 (953)
+++.+.+ ..++...|+||.+.|..+.+ ....|.-++.+|.-.+.+ +...+ .+.+.|.-+|+.
T Consensus 79 kpi~g~~--~nvS~LTynp~~rtLFav~n--------~p~~iVElt~~GdlirtiPL~g~~D------pE~Ieyig~n~f 142 (316)
T COG3204 79 KPILGET--ANVSSLTYNPDTRTLFAVTN--------KPAAIVELTKEGDLIRTIPLTGFSD------PETIEYIGGNQF 142 (316)
T ss_pred ccccccc--ccccceeeCCCcceEEEecC--------CCceEEEEecCCceEEEecccccCC------hhHeEEecCCEE
Confidence 3354444 35899999999998876543 456787788777655544 33222 557889988876
Q ss_pred EE
Q 002209 258 LV 259 (953)
Q Consensus 258 l~ 259 (953)
.+
T Consensus 143 vi 144 (316)
T COG3204 143 VI 144 (316)
T ss_pred EE
Confidence 66
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.97 Score=45.46 Aligned_cols=106 Identities=11% Similarity=0.054 Sum_probs=56.5
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
....++|||+++++.+.+- .++..+.+..++.-.....+...++ .
T Consensus 161 ~ns~~~snd~~~~~~Vgds---------------------------------~~Vf~y~id~~sey~~~~~~a~t~D--~ 205 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDS---------------------------------RRVFRYAIDDESEYIENIYEAPTSD--H 205 (344)
T ss_pred eeeeEEcCCCceEEEecCC---------------------------------CcceEEEeCCccceeeeeEecccCC--C
Confidence 4566778888877776552 3455666643332222222222222 3
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCC-ce-eecccCCCccccccccceEEecCC--eEEEEE
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-KA-RPLFQSPDIYLNAIFDNFVWVNNS--TLLVCT 261 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g-~~-~~lt~~~~~~~~~~~~~~~wspDg--~~l~~~ 261 (953)
-...+||......|...+ ++...|| |+..- .+ ...+. .....|+.+..+.||+-| ..|+|+
T Consensus 206 gF~~S~s~~~~~FAv~~Q-------dg~~~I~--DVR~~~tpm~~~ss-trp~hnGa~R~c~Fsl~g~lDLLf~s 270 (344)
T KOG4532|consen 206 GFYNSFSENDLQFAVVFQ-------DGTCAIY--DVRNMATPMAEISS-TRPHHNGAFRVCRFSLYGLLDLLFIS 270 (344)
T ss_pred ceeeeeccCcceEEEEec-------CCcEEEE--Eecccccchhhhcc-cCCCCCCceEEEEecCCCcceEEEEe
Confidence 466789987777776553 3344444 44432 22 11111 112245568899999877 356665
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.9 Score=48.22 Aligned_cols=103 Identities=18% Similarity=0.142 Sum_probs=64.2
Q ss_pred CCCcceEEEEECCCCceee-cccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccch
Q 002209 215 SSSKLRVWVADVDTGKARP-LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVR 293 (953)
Q Consensus 215 ~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (953)
+.+...+|++++.+|+... ++... +-+.+....|+.+-..|+...
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~---h~~~v~~~~~~~~~~ciyS~~------------------------------- 121 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDK---HYGNVNEILDAQRLGCIYSVG------------------------------- 121 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCC---CCCcceeeecccccCceEecC-------------------------------
Confidence 3357789999998887643 33211 111255666666555555330
Q ss_pred hhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEE
Q 002209 294 TFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (953)
Q Consensus 294 ~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~ 370 (953)
+..++..++. ++...++... ..+.+.++||||+.++..+ .+|-+
T Consensus 122 ------------------ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as---------------~~ik~ 168 (541)
T KOG4547|consen 122 ------------------ADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS---------------RQIKV 168 (541)
T ss_pred ------------------CceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc---------------ceEEE
Confidence 2234445555 6655555443 5678999999999888776 28999
Q ss_pred EeccCceEEE-eccC
Q 002209 371 WTTDGIFVRE-LCDL 384 (953)
Q Consensus 371 ~d~~g~~~~~-l~~~ 384 (953)
||++.+++.. .+.+
T Consensus 169 ~~~~~kevv~~ftgh 183 (541)
T KOG4547|consen 169 LDIETKEVVITFTGH 183 (541)
T ss_pred EEccCceEEEEecCC
Confidence 9999766543 4443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.98 E-value=3 Score=43.02 Aligned_cols=117 Identities=12% Similarity=0.167 Sum_probs=67.9
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
..+++..|+||.+.|+.+.+.. ..|.-.+.+|.-++.+.-.... ....+.|.-+|+
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p------------~~iVElt~~GdlirtiPL~g~~------------DpE~Ieyig~n~ 141 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKP------------AAIVELTKEGDLIRTIPLTGFS------------DPETIEYIGGNQ 141 (316)
T ss_pred ccccceeeCCCcceEEEecCCC------------ceEEEEecCCceEEEecccccC------------ChhHeEEecCCE
Confidence 5689999999999988776432 2555566777777765543211 113456666664
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCC------ceEEeec---ccccCCeeeccCCceEEEEEecccCceE
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG------PEILHKL---DLRYGGISWCDDSLALVYESWYKTRRTR 482 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~------~~~l~~~---~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 482 (953)
..+ ++. ....++.+.+++ ++.. ...|... .....+++|+|..++|+++.+++.. .
T Consensus 142 fvi--~dE-----------R~~~l~~~~vd~-~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~--~ 205 (316)
T COG3204 142 FVI--VDE-----------RDRALYLFTVDA-DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPI--G 205 (316)
T ss_pred EEE--Eeh-----------hcceEEEEEEcC-CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCc--E
Confidence 221 111 123455544411 2111 1112111 2334679999999999998877765 7
Q ss_pred EEEEcC
Q 002209 483 TWVISP 488 (953)
Q Consensus 483 l~~~d~ 488 (953)
||.++.
T Consensus 206 I~~~~~ 211 (316)
T COG3204 206 IFEVTQ 211 (316)
T ss_pred EEEEec
Confidence 888873
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.69 Score=53.22 Aligned_cols=99 Identities=9% Similarity=0.077 Sum_probs=60.8
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC--ceEEEeccCCCcccCCccccccccCccceeeccC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g--~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
..++.+.|||--....++..+ .+.+.+||+.- .-.++++.+. +-+.-+.|+|+
T Consensus 177 ESiRDV~fsp~~~~~F~s~~d------------sG~lqlWDlRqp~r~~~k~~AH~-------------GpV~c~nwhPn 231 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHD------------SGYLQLWDLRQPDRCEKKLTAHN-------------GPVLCLNWHPN 231 (839)
T ss_pred hhhhceeeccCCCceEEEecC------------CceEEEeeccCchhHHHHhhccc-------------CceEEEeecCC
Confidence 778899999954444444322 34899999973 2233444432 22345889998
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE-E-eecccccCCeeeccCCceEE
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-L-HKLDLRYGGISWCDDSLALV 471 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~-l-~~~~~~~~~~~~SpDg~~l~ 471 (953)
+..||-. +.+..+-+|+. ++++... + ......+..+.|-|+-.+.+
T Consensus 232 r~~lATG-------------GRDK~vkiWd~---t~~~~~~~~tInTiapv~rVkWRP~~~~hL 279 (839)
T KOG0269|consen 232 REWLATG-------------GRDKMVKIWDM---TDSRAKPKHTINTIAPVGRVKWRPARSYHL 279 (839)
T ss_pred Cceeeec-------------CCCccEEEEec---cCCCccceeEEeecceeeeeeeccCccchh
Confidence 8766544 33446778885 4443332 2 34455677899999977643
|
|
| >COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.12 Score=55.28 Aligned_cols=172 Identities=16% Similarity=0.133 Sum_probs=92.7
Q ss_pred CCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002209 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (953)
Q Consensus 697 ~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (953)
|+.........|.++|+-|+..|..-+ +.....-+....|+.+.+++-..+- ...++.++|+|+|+=+--.+
T Consensus 272 Wr~lDk~v~~~l~~~gvpVvGvdsLRY------fW~~rtPe~~a~Dl~r~i~~y~~~w--~~~~~~liGySfGADvlP~~ 343 (456)
T COG3946 272 WRDLDKEVAEALQKQGVPVVGVDSLRY------FWSERTPEQIAADLSRLIRFYARRW--GAKRVLLIGYSFGADVLPFA 343 (456)
T ss_pred hhhhhHHHHHHHHHCCCceeeeehhhh------hhccCCHHHHHHHHHHHHHHHHHhh--CcceEEEEeecccchhhHHH
Confidence 444555667788999999998554322 2223344677889999988887653 24699999999999877666
Q ss_pred HHhCCCcccEEEEcccCCCCCC-CCcCcccccchhhhhHHHHHhcCcccccCCCC-CcEEEEEeC--CCCCCCCchHHHH
Q 002209 777 LAHAPHLFCCGIARSGAYNRTL-TPFGFQNEDRTLWEATSTYVEMSPFMSANKLK-KPILLVHGE--EDNNSGTLTMQSD 852 (953)
Q Consensus 777 a~~~p~~~~a~v~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Li~~G~--~D~~v~~~~~~~~ 852 (953)
-.+.|...+..|-......... ..+.+.-+ -|-....-........+.+|. .-+..|.|. +|..|| -
T Consensus 344 ~n~L~~~~r~~v~~~~ll~l~~~~~fe~~v~---gWlg~~~~g~~~~~~~~~~l~~~~v~CiYG~~e~d~~Cp--~---- 414 (456)
T COG3946 344 YNRLPPATRQRVRMVSLLGLGRTADFEISVE---GWLGMAGEGAGDVVPDIAKLPLARVQCIYGQEEKDTACP--S---- 414 (456)
T ss_pred HHhCCHHHHHHHHHHHHHhccccceEEEEEe---eeeccCCcCCCCcchhhhhCCcceeEEEecCccccccCC--c----
Confidence 6665543332222211111000 00100000 010000000012223334443 246667775 455555 3
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 853 RFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
++.++ ++.+.+|| ||.| .++.+.+.+.|++=+.
T Consensus 415 -----l~~~~--~~~v~lpG-gHHF--d~dy~~la~~il~~~~ 447 (456)
T COG3946 415 -----LKAKG--VDTVKLPG-GHHF--DGDYEKLAKAILQGMR 447 (456)
T ss_pred -----chhhc--ceeEecCC-Cccc--CccHHHHHHHHHHHHH
Confidence 22233 46777898 6766 3455666777776653
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=94.83 E-value=1.7 Score=44.85 Aligned_cols=123 Identities=13% Similarity=0.152 Sum_probs=66.2
Q ss_pred eEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccce
Q 002209 326 KEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSI 404 (953)
Q Consensus 326 ~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~ 404 (953)
+.|..- ..++.++|.||.+.|+.+.+. +..|+.++++|.-.+.+.-... .-...+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~------------~~~i~els~~G~vlr~i~l~g~------------~D~EgI 70 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDE------------PGEIYELSLDGKVLRRIPLDGF------------GDYEGI 70 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETT------------TTEEEEEETT--EEEEEE-SS-------------SSEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECC------------CCEEEEEcCCCCEEEEEeCCCC------------CCceeE
Confidence 344443 568899999999998888743 2378888888776666553221 112356
Q ss_pred eeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc-----eEEe-----ecccccCCeeeccCCceEEEEE
Q 002209 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-----EILH-----KLDLRYGGISWCDDSLALVYES 474 (953)
Q Consensus 405 ~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-----~~l~-----~~~~~~~~~~~SpDg~~l~~~~ 474 (953)
++.-+|+ +...+ .....++.+++ +..+... +.+. .......+++|.+.+++|+.+.
T Consensus 71 ~y~g~~~--~vl~~-----------Er~~~L~~~~~-~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k 136 (248)
T PF06977_consen 71 TYLGNGR--YVLSE-----------ERDQRLYIFTI-DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK 136 (248)
T ss_dssp EE-STTE--EEEEE-----------TTTTEEEEEEE-----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE
T ss_pred EEECCCE--EEEEE-----------cCCCcEEEEEE-eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe
Confidence 6766563 22211 12346776665 1122211 1121 1223356799999999988876
Q ss_pred ecccCceEEEEEcC
Q 002209 475 WYKTRRTRTWVISP 488 (953)
Q Consensus 475 ~~~~~~~~l~~~d~ 488 (953)
+++.. .||.++.
T Consensus 137 E~~P~--~l~~~~~ 148 (248)
T PF06977_consen 137 ERKPK--RLYEVNG 148 (248)
T ss_dssp ESSSE--EEEEEES
T ss_pred CCCCh--hhEEEcc
Confidence 65543 7888876
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.28 Score=54.07 Aligned_cols=131 Identities=15% Similarity=0.022 Sum_probs=83.5
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCccEEEEeCC-CCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYP-GEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 648 dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hG-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+...+=++|.+..+... .-|+.|++-| ||.. ..|-... +..+...-.+.|-.|+.... +=+
T Consensus 67 ~~~~~Qq~~y~n~~~~~~---~gPiFLmIGGEgp~~---------~~wv~~~--~~~~~~~AkkfgA~v~~lEH---RFY 129 (514)
T KOG2182|consen 67 NGKFFQQRFYNNNQWAKP---GGPIFLMIGGEGPES---------DKWVGNE--NLTWLQWAKKFGATVFQLEH---RFY 129 (514)
T ss_pred hhhhhhhheeeccccccC---CCceEEEEcCCCCCC---------CCccccC--cchHHHHHHHhCCeeEEeee---ecc
Confidence 344444456666554322 2688999877 3211 1111111 12233333457888888333 334
Q ss_pred CChhh-------h--hhhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 727 GDEEA-------N--DRFVEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 727 G~~~~-------~--~~~~~~~~~D~~~~~~~l~~~~-~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
|.+.. + .-...+.+.|+..+|+.+..+. .-+..+.+.+|.||-|.|++|+=..+|+++.++|+-++++.
T Consensus 130 G~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv~ 208 (514)
T KOG2182|consen 130 GQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPVL 208 (514)
T ss_pred ccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeeccccccee
Confidence 54421 1 1225678999999999997764 45556999999999999999999999999999998877643
|
|
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.14 Score=52.59 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC----C-----CcccEEEEcccCCCCCCCCcCcccccch
Q 002209 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA----P-----HLFCCGIARSGAYNRTLTPFGFQNEDRT 809 (953)
Q Consensus 739 ~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~----p-----~~~~a~v~~~~~~d~~~~~~~~~~~~~~ 809 (953)
...++...++.|.+.. ...+|.|++||||+.+.+.++... + .+|.-+++.+|-.+..
T Consensus 75 s~~~l~~~L~~L~~~~--~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d------------ 140 (233)
T PF05990_consen 75 SGPALARFLRDLARAP--GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDND------------ 140 (233)
T ss_pred HHHHHHHHHHHHHhcc--CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHH------------
Confidence 3445555566665542 357999999999999998887542 1 2466777777644311
Q ss_pred hhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCC
Q 002209 810 LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNN 843 (953)
Q Consensus 810 ~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~ 843 (953)
.+...- ..+.+...++.+.+..+|..
T Consensus 141 ------~f~~~~--~~~~~~~~~itvy~s~~D~A 166 (233)
T PF05990_consen 141 ------VFRSQL--PDLGSSARRITVYYSRNDRA 166 (233)
T ss_pred ------HHHHHH--HHHhhcCCCEEEEEcCCchH
Confidence 011000 02223347889999999965
|
|
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.9 Score=44.47 Aligned_cols=131 Identities=13% Similarity=0.128 Sum_probs=81.0
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCC-ccchHHHHHHHcCcEEEE
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR-IGSTSVLLWLARGFAILG 717 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~G~~V~~ 717 (953)
.++..+++..| .++..++--+ +++.|++|-.|.=..+.+ ..|.. +....+..++.+ |.|..
T Consensus 22 ~~e~~V~T~~G-~v~V~V~Gd~------~~~kpaiiTyhDlglN~~----------scFq~ff~~p~m~ei~~~-fcv~H 83 (326)
T KOG2931|consen 22 CQEHDVETAHG-VVHVTVYGDP------KGNKPAIITYHDLGLNHK----------SCFQGFFNFPDMAEILEH-FCVYH 83 (326)
T ss_pred ceeeeeccccc-cEEEEEecCC------CCCCceEEEecccccchH----------hHhHHhhcCHhHHHHHhh-eEEEe
Confidence 34555666565 5788887422 124677888887211111 01211 112334456666 88888
Q ss_pred cCCCCCCCCCChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 718 GPTTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
++..|. -.|-...+. ...+++.+++..+++++. -+-|.-+|--.|+++-...|..+|+++-+.|++.+.
T Consensus 84 V~~PGq-e~gAp~~p~~y~yPsmd~LAd~l~~VL~~f~------lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~ 156 (326)
T KOG2931|consen 84 VDAPGQ-EDGAPSFPEGYPYPSMDDLADMLPEVLDHFG------LKSVIGMGVGAGAYILARFALNHPERVLGLVLINCD 156 (326)
T ss_pred cCCCcc-ccCCccCCCCCCCCCHHHHHHHHHHHHHhcC------cceEEEecccccHHHHHHHHhcChhheeEEEEEecC
Confidence 554221 112111122 236677788888877752 346889999999999999999999999999999864
Q ss_pred C
Q 002209 794 Y 794 (953)
Q Consensus 794 ~ 794 (953)
.
T Consensus 157 ~ 157 (326)
T KOG2931|consen 157 P 157 (326)
T ss_pred C
Confidence 3
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=94.65 E-value=6.2 Score=40.60 Aligned_cols=52 Identities=12% Similarity=0.039 Sum_probs=28.5
Q ss_pred ccceEEEEEc-CCceeEeCC-CCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce
Q 002209 312 ATTQLVLVSL-DGTVKEIGP-PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF 377 (953)
Q Consensus 312 ~~~~l~~~~~-~g~~~~l~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~ 377 (953)
....|+.+|. +|+...-.. +..+... ...++..|++...+ +.++.+|..+++
T Consensus 44 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v~v~~~~-------------~~l~~~d~~tG~ 97 (238)
T PF13360_consen 44 GDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRVYVGTSD-------------GSLYALDAKTGK 97 (238)
T ss_dssp TTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEEEEEETT-------------SEEEEEETTTSC
T ss_pred CCCEEEEEECCCCCEEEEeeccccccce-eeecccccccccce-------------eeeEecccCCcc
Confidence 3467889998 887544332 2222221 13355566655522 268888865443
|
... |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.063 Score=60.75 Aligned_cols=114 Identities=10% Similarity=0.084 Sum_probs=66.1
Q ss_pred ceEEEEEc-CC-ceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 314 TQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 314 ~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
+.|-++|+ .+ .++.|+.. ..+.++.|+|=|.+.+-.+.+ .++.+||...........
T Consensus 92 gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStd-------------td~~iwD~Rk~Gc~~~~~------- 151 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTD-------------TDLKIWDIRKKGCSHTYK------- 151 (825)
T ss_pred CceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccc-------------ccceehhhhccCceeeec-------
Confidence 34556777 55 56667766 778889999999887544433 378889887322221111
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCC
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDS 467 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg 467 (953)
+...+++.+.|+|||+.++-. +....+-+||+ ..|.-...+..+.+.+..+.|.|-.
T Consensus 152 -----s~~~vv~~l~lsP~Gr~v~~g-------------~ed~tvki~d~--~agk~~~ef~~~e~~v~sle~hp~e 208 (825)
T KOG0267|consen 152 -----SHTRVVDVLRLSPDGRWVASG-------------GEDNTVKIWDL--TAGKLSKEFKSHEGKVQSLEFHPLE 208 (825)
T ss_pred -----CCcceeEEEeecCCCceeecc-------------CCcceeeeecc--cccccccccccccccccccccCchh
Confidence 112345678999999854433 23456777875 2222222233344555555555543
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.086 Score=54.40 Aligned_cols=72 Identities=17% Similarity=0.101 Sum_probs=41.8
Q ss_pred cEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCcccEEEE
Q 002209 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFCCGIA 789 (953)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~---p~~~~a~v~ 789 (953)
.-|+.. ...|++.........+.++...+++|..+. + ..++.+.|||+||++|..+|.+- .+.+.-+++
T Consensus 27 ~~v~~l---~a~g~~~~~~~~~~l~~~a~~yv~~Ir~~Q--P---~GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~l 98 (257)
T COG3319 27 LPVYGL---QAPGYGAGEQPFASLDDMAAAYVAAIRRVQ--P---EGPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGL 98 (257)
T ss_pred ceeecc---ccCcccccccccCCHHHHHHHHHHHHHHhC--C---CCCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEE
Confidence 556663 334444322222334566655555554442 2 23799999999999999988753 233444444
Q ss_pred ccc
Q 002209 790 RSG 792 (953)
Q Consensus 790 ~~~ 792 (953)
+..
T Consensus 99 lD~ 101 (257)
T COG3319 99 LDA 101 (257)
T ss_pred ecc
Confidence 443
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.36 E-value=9.5 Score=46.57 Aligned_cols=65 Identities=9% Similarity=0.074 Sum_probs=39.5
Q ss_pred CeEEEEECCCC-ceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecC-CCCceEEEEECCCCCeeEEecC
Q 002209 552 PFLDLFDINTG-SKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESK-TENTQYYIQSWPDKKSCQITDF 627 (953)
Q Consensus 552 ~~L~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~~p~~l~~~~~~~g~~~~Lt~~ 627 (953)
.|+..+....+ ....++.+.+. +... ..++.+.++++|..... ..-.++|.+++.+.....+|..
T Consensus 366 ~hi~~~~~~~~~~~~~lt~g~w~-----v~~i------~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~~~~~lt~~ 432 (755)
T KOG2100|consen 366 NHIAYLKLSNGSEPRMLTSGNWE-----VTSI------LGYDKDSNRIYFDAYEEDPSERHLYSISLGSGTVESLTCS 432 (755)
T ss_pred EEEEEEEcCCCCccccccccceE-----EEEe------ccccCCCceEEEEecCCCCCceEEEEEEcccccccccccc
Confidence 45666666555 66666666654 2222 12335667777766654 3446799999888777666643
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.30 E-value=1.3 Score=50.10 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=21.8
Q ss_pred eEEEEEc-CCc-eeEeCCCCcccccccCCCCcEEEEEEe
Q 002209 315 QLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSI 351 (953)
Q Consensus 315 ~l~~~~~-~g~-~~~l~~~~~~~~~~~SpDG~~l~~~~~ 351 (953)
.|..+|. +++ .+++.- ..+..+.||+||+++++.+.
T Consensus 127 ~i~~yDw~~~~~i~~i~v-~~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 127 FICFYDWETGKLIRRIDV-SAVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp EEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S
T ss_pred CEEEEEhhHcceeeEEec-CCCcEEEEECCCCEEEEEeC
Confidence 4778888 664 444443 23678899999999999973
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2 | Back alignment and domain information |
|---|
Probab=94.30 E-value=1.7 Score=48.19 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 734 RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 734 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
.+-...+.-+..++++| + .+.+.+.+.|.|||.+-|++.++.. .-.|+|..-|+.+
T Consensus 336 eyE~~I~~~I~~~L~~L---g-F~~~qLILSGlSMGTfgAlYYga~l--~P~AIiVgKPL~N 391 (511)
T TIGR03712 336 EYEQGIINVIQEKLDYL---G-FDHDQLILSGLSMGTFGALYYGAKL--SPHAIIVGKPLVN 391 (511)
T ss_pred HHHHHHHHHHHHHHHHh---C-CCHHHeeeccccccchhhhhhcccC--CCceEEEcCcccc
Confidence 34334444444555554 3 4678899999999999999999876 2578888888766
|
This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.22 Score=52.55 Aligned_cols=117 Identities=20% Similarity=0.217 Sum_probs=71.0
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHc---C------cEEEEc
Q 002209 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR---G------FAILGG 718 (953)
Q Consensus 648 dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~---G------~~V~~~ 718 (953)
.|.+++-.-..|+.- ..++..+|++ ++||+|..-.+ | . .+...|..- | |-|++|
T Consensus 132 eGL~iHFlhvk~p~~-k~~k~v~PlL-l~HGwPGsv~E-----------F---y-kfIPlLT~p~~hg~~~d~~FEVI~P 194 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQK-KKKKKVKPLL-LLHGWPGSVRE-----------F---Y-KFIPLLTDPKRHGNESDYAFEVIAP 194 (469)
T ss_pred cceeEEEEEecCCcc-ccCCcccceE-EecCCCchHHH-----------H---H-hhhhhhcCccccCCccceeEEEecc
Confidence 678888888888753 3334456655 48998733211 1 1 112222221 2 788884
Q ss_pred CCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEE
Q 002209 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (953)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (953)
...|+|.|.+....+-..++-+.-..+.+...+ -++.+|-|.-+|.-++..++..+|+.+.+.
T Consensus 195 ---SlPGygwSd~~sk~GFn~~a~ArvmrkLMlRLg---~nkffiqGgDwGSiI~snlasLyPenV~Gl 257 (469)
T KOG2565|consen 195 ---SLPGYGWSDAPSKTGFNAAATARVMRKLMLRLG---YNKFFIQGGDWGSIIGSNLASLYPENVLGL 257 (469)
T ss_pred ---CCCCcccCcCCccCCccHHHHHHHHHHHHHHhC---cceeEeecCchHHHHHHHHHhhcchhhhHh
Confidence 446788886654332222222122223344444 368999999999999999999999987754
|
|
| >KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.053 Score=59.86 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=63.8
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~ 748 (953)
.-+|+.+|||.+ +......+. .+.+.|+ +.|+-|+.++| +.+++..++...+.+.-|.-
T Consensus 396 ~sli~HcHGGGf--------VAqsSkSHE----~YLr~Wa~aL~cPiiSVdY--------SLAPEaPFPRaleEv~fAYc 455 (880)
T KOG4388|consen 396 RSLIVHCHGGGF--------VAQSSKSHE----PYLRSWAQALGCPIISVDY--------SLAPEAPFPRALEEVFFAYC 455 (880)
T ss_pred ceEEEEecCCce--------eeecccccc----HHHHHHHHHhCCCeEEeee--------ccCCCCCCCcHHHHHHHHHH
Confidence 358999999854 333222332 3345566 46999999777 56666677888888888999
Q ss_pred HHHHc----CCCCCCcEEEEEeChHHHHHHHHHHh
Q 002209 749 EVVRR----GVAHPSKIAVGGHSYGAFMTANLLAH 779 (953)
Q Consensus 749 ~l~~~----~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (953)
|++.+ ++ ..+||.+.|-|.||.+.+-++.+
T Consensus 456 W~inn~allG~-TgEriv~aGDSAGgNL~~~VaLr 489 (880)
T KOG4388|consen 456 WAINNCALLGS-TGERIVLAGDSAGGNLCFTVALR 489 (880)
T ss_pred HHhcCHHHhCc-ccceEEEeccCCCcceeehhHHH
Confidence 98875 33 46899999999999987666543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=93.61 E-value=15 Score=41.09 Aligned_cols=55 Identities=13% Similarity=0.078 Sum_probs=29.7
Q ss_pred eEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeE
Q 002209 553 FLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (953)
Q Consensus 553 ~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~ 623 (953)
.|+.+|..+|+. +|..... ......+....+..+++.... ..++.++..+|+...
T Consensus 290 ~l~~~d~~tG~~--~W~~~~~----------~~~~~ssp~i~g~~l~~~~~~----G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 290 VVVALDRRSGSE--LWKNDEL----------KYRQLTAPAVVGGYLVVGDFE----GYLHWLSREDGSFVA 344 (377)
T ss_pred eEEEEECCCCcE--EEccccc----------cCCccccCEEECCEEEEEeCC----CEEEEEECCCCCEEE
Confidence 499999988863 4544211 000001112235555554322 468999988887654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.32 Score=55.11 Aligned_cols=31 Identities=0% Similarity=-0.121 Sum_probs=21.6
Q ss_pred CceeEeCCCCcccccccCCCCcEEEEEEecC
Q 002209 323 GTVKEIGPPAVYTSLDPSPDEKYILISSIHR 353 (953)
Q Consensus 323 g~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~ 353 (953)
.++..+..+-.+....|+|+|..||+..++.
T Consensus 250 ~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 250 PEPVVVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CCCeEEecccEeecceecCCCcEEEEccCcc
Confidence 3444444444567889999999999887553
|
|
| >KOG3975 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.54 E-value=1.9 Score=43.19 Aligned_cols=44 Identities=11% Similarity=0.085 Sum_probs=30.7
Q ss_pred CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 002209 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (953)
Q Consensus 830 ~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (953)
..-+-+..|+.|.-|| ......+.+.+++- ++++.+ .+..|.|-
T Consensus 242 ~d~l~Fyygt~DgW~p--~~~~d~~kdd~~ee--d~~Lde-dki~HAFV 285 (301)
T KOG3975|consen 242 LDSLWFYYGTNDGWVP--SHYYDYYKDDVPEE--DLKLDE-DKIPHAFV 285 (301)
T ss_pred CcEEEEEccCCCCCcc--hHHHHHHhhhcchh--ceeecc-ccCCccee
Confidence 3567888999999998 66666655555433 456655 67889884
|
|
| >KOG1551 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.39 Score=48.06 Aligned_cols=66 Identities=17% Similarity=0.085 Sum_probs=39.1
Q ss_pred ccCCCCCc-----EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 825 SANKLKKP-----ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 825 ~~~~i~~P-----~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
.+.+..+| +.++..++|..+| -.....+-+... |..++ ..+ .||.-...-....+.+.|.+-|++.
T Consensus 296 ~v~~fp~Pvdpsl~ivv~A~~D~Yip--r~gv~~lQ~~WP--g~eVr--~~e-gGHVsayl~k~dlfRR~I~d~L~R~ 366 (371)
T KOG1551|consen 296 HVANFPVPVDPSLIIVVQAKEDAYIP--RTGVRSLQEIWP--GCEVR--YLE-GGHVSAYLFKQDLFRRAIVDGLDRL 366 (371)
T ss_pred hhhcCCCCCCCCeEEEEEecCCcccc--ccCcHHHHHhCC--CCEEE--Eee-cCceeeeehhchHHHHHHHHHHHhh
Confidence 44444444 5777899999987 544444444432 44444 455 4896543333445667788877763
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.33 E-value=4.4 Score=42.06 Aligned_cols=86 Identities=9% Similarity=0.103 Sum_probs=59.6
Q ss_pred CCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCC--CccccCC
Q 002209 432 RDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS--SEDVYSD 509 (953)
Q Consensus 432 ~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~~~~ 509 (953)
.++|-+.|+....-+.+..+..++.++..++.+-+|..|+.++..++ -|.++|..+| +...-..+. ..++|.
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT---LIRIFdt~~g--~~l~E~RRG~d~A~iy~- 231 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGT---LIRIFDTEDG--TLLQELRRGVDRADIYC- 231 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcE---EEEEEEcCCC--cEeeeeecCCchheEEE-
Confidence 46777888611111234677888989999999999999988876553 4677787775 333333332 234555
Q ss_pred CCCCCeEeccCCCEEEEEe
Q 002209 510 PGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 510 ~~~p~~~~SpDG~~l~~~~ 528 (953)
++||||++||+..+
T Consensus 232 -----iaFSp~~s~LavsS 245 (346)
T KOG2111|consen 232 -----IAFSPNSSWLAVSS 245 (346)
T ss_pred -----EEeCCCccEEEEEc
Confidence 89999999999887
|
|
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.36 Score=51.19 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh--------CCCcccEEEEcccC
Q 002209 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH--------APHLFCCGIARSGA 793 (953)
Q Consensus 737 ~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~--------~p~~~~a~v~~~~~ 793 (953)
.+-..++...+.+|.+...+ ++|.|+.||||.++++.++-+ .+..|+-+|+.+|=
T Consensus 171 ~~Sr~aLe~~lr~La~~~~~--~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPD 233 (377)
T COG4782 171 NYSRPALERLLRYLATDKPV--KRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPD 233 (377)
T ss_pred hhhHHHHHHHHHHHHhCCCC--ceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCC
Confidence 45567888899999887643 589999999999999877643 12346777776663
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.22 E-value=3.9 Score=43.60 Aligned_cols=98 Identities=8% Similarity=-0.028 Sum_probs=58.4
Q ss_pred ccCCeEEEEecCCCCCCCceE-EeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEe-ecCCCcccc
Q 002209 430 TPRDIIYTQQAEPVQGEGPEI-LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL-FDRSSEDVY 507 (953)
Q Consensus 430 ~~~~~l~~~d~~~~~g~~~~~-l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~ 507 (953)
....++.+||. ..+..+.. +.-.+..++.+...|+|..|+++.... .|..+|..++. ...- ...-.+.+.
T Consensus 223 T~~hqvR~YDt--~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g----~l~~FD~r~~k--l~g~~~kg~tGsir 294 (412)
T KOG3881|consen 223 TRYHQVRLYDT--RHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKG----QLAKFDLRGGK--LLGCGLKGITGSIR 294 (412)
T ss_pred ecceeEEEecC--cccCcceeEeccccCcceeeeecCCCcEEEEecccc----hhheecccCce--eeccccCCccCCcc
Confidence 45678999983 43333322 233345566788899999987764332 67788877641 1111 122122111
Q ss_pred CCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCC
Q 002209 508 SDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTG 562 (953)
Q Consensus 508 ~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~ 562 (953)
+ +...|.++.|+....++ +|.++|+++.
T Consensus 295 s------ih~hp~~~~las~GLDR---------------------yvRIhD~ktr 322 (412)
T KOG3881|consen 295 S------IHCHPTHPVLASCGLDR---------------------YVRIHDIKTR 322 (412)
T ss_pred e------EEEcCCCceEEeeccce---------------------eEEEeecccc
Confidence 1 66778888888777554 4888998773
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=2.6 Score=49.04 Aligned_cols=62 Identities=6% Similarity=-0.063 Sum_probs=36.0
Q ss_pred CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC-Cc-------eeecccCCCccccccccceEEecCCeEEE
Q 002209 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GK-------ARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (953)
Q Consensus 188 ~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~-g~-------~~~lt~~~~~~~~~~~~~~~wspDg~~l~ 259 (953)
+.....|+|.++| ++....+ +....|..+..++ ++ ........+. .+..+..|+||.+++
T Consensus 382 g~~Lt~PS~d~~g-~vWtv~~-------g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~----~I~~lrvSrDG~R~A 449 (573)
T PRK13614 382 GSTLTRPSFSPQD-WVWTAGP-------GGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGR----TVKELRVSREGVRAL 449 (573)
T ss_pred CCCccCCcccCCC-CEEEeeC-------CCCceEEEEecCCCcccccccceeecccccCCC----eeEEEEECCCccEEE
Confidence 3467889999999 6665432 1223555555432 22 1111111111 277899999999888
Q ss_pred EE
Q 002209 260 CT 261 (953)
Q Consensus 260 ~~ 261 (953)
+.
T Consensus 450 vi 451 (573)
T PRK13614 450 VI 451 (573)
T ss_pred EE
Confidence 76
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.09 E-value=15 Score=41.39 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=28.5
Q ss_pred ccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCC
Q 002209 457 RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (953)
Q Consensus 457 ~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 503 (953)
.+..+.|+.||-.++.....+ .++++|+.+ .++..+-+...
T Consensus 230 svTal~F~d~gL~~aVGts~G----~v~iyDLRa--~~pl~~kdh~~ 270 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGTSTG----SVLIYDLRA--SKPLLVKDHGY 270 (703)
T ss_pred cceEEEecCCceeEEeeccCC----cEEEEEccc--CCceeecccCC
Confidence 366789999998888765433 688888877 35555555433
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.08 E-value=16 Score=39.88 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=76.5
Q ss_pred cccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCC--ccccccccCccceeeccCC
Q 002209 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP--IAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 333 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p--~~~~~~~~~~~~~~wspDg 410 (953)
...++++.+||..++..- ... .......|+.++.+|...+.+.......... ..-...+.|..+++++|||
T Consensus 86 D~Egi~~~~~g~~~is~E-~~~------~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG 158 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSE-GGR------TGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG 158 (326)
T ss_pred ChhHeEEecCCCEEEEeC-Ccc------CCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCC
Confidence 344667766775444332 210 0111247888888866655542211110000 0111234566789999999
Q ss_pred CCceEEEEec---cCCCcccccccCCeEEEEecCCCCCCC-ceEE----ee-----cccccCCeeeccCCceEEEEEec-
Q 002209 411 PSTLYWAETQ---DGGDAKVEVTPRDIIYTQQAEPVQGEG-PEIL----HK-----LDLRYGGISWCDDSLALVYESWY- 476 (953)
Q Consensus 411 ~~i~~~~~~~---~~~~~~~~~~~~~~l~~~d~~~~~g~~-~~~l----~~-----~~~~~~~~~~SpDg~~l~~~~~~- 476 (953)
+.|+...+.. ++.......+..-+++.++. .+.+. ...+ .. ....+..+.+-+|++.|+.....
T Consensus 159 ~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~--~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~ 236 (326)
T PF13449_consen 159 RTLFAAMESPLKQDGPRANPDNGSPLRILRYDP--KTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFS 236 (326)
T ss_pred CEEEEEECccccCCCcccccccCceEEEEEecC--CCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCC
Confidence 9777766543 22111111122235566663 33221 2221 11 23455678899999977776542
Q ss_pred --ccCceEEEEEcCCC
Q 002209 477 --KTRRTRTWVISPGS 490 (953)
Q Consensus 477 --~~~~~~l~~~d~~~ 490 (953)
.....+||.+++..
T Consensus 237 ~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 237 PGTGNYKRIYRVDLSD 252 (326)
T ss_pred CCccceEEEEEEEccc
Confidence 12346899999865
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=6.4 Score=46.38 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=37.2
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce-----eecccCCCccccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-----RPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
.+..++.|+||+.+|+... ....||+-.+.++.. +.+..... +..+.|.++| .++..
T Consensus 364 ~~~s~avS~~g~~~A~v~~--------~~~~l~vg~~~~~~~~~~~~~~~~~~~~------Lt~PS~d~~g-~vWtv 425 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISA--------DGDSVYVGSLTPGASIGVHSWGVTADGR------LTSPSWDGRG-DLWVV 425 (599)
T ss_pred CccceEEcCCCceEEEEcC--------CCcEEEEeccCCCCccccccceeeccCc------ccCCcCcCCC-CEEEe
Confidence 5778999999999999742 245788876544332 23333222 5578898888 56543
|
|
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.67 Score=52.33 Aligned_cols=151 Identities=13% Similarity=0.057 Sum_probs=79.5
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCcc--------chHHHHHHHc
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIG--------STSVLLWLAR 711 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~la~~ 711 (953)
..+.+....+..+..+++.... ++. ..|+|+|+-|||..+.-......-||.....-. ......|.+.
T Consensus 42 Gy~~v~~~~~~~lf~~f~es~~-~~~---~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~ 117 (437)
T PLN02209 42 GYIGIGEEENVQFFYYFIKSDK-NPQ---EDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKT 117 (437)
T ss_pred EEEEecCCCCeEEEEEEEecCC-CCC---CCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhc
Confidence 3455554456667777765432 222 379999999998776543333333443322110 0001123333
Q ss_pred CcEEEEcCCCCCCCCCChhhhh--hhHHHHHHHHHHHHHHHH-HcCCCCCCcEEEEEeChHHHHHHHHHHh----C----
Q 002209 712 GFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAVEEVV-RRGVAHPSKIAVGGHSYGAFMTANLLAH----A---- 780 (953)
Q Consensus 712 G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~~~~~l~-~~~~~d~~~i~l~G~S~GG~~a~~~a~~----~---- 780 (953)
..++..|-.-.+|+....... ..-....+|+..++.... ..+.....++.|+|.||||..+-.++.. .
T Consensus 118 -anllfiDqPvGtGfSy~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~ 196 (437)
T PLN02209 118 -ANIIFLDQPVGSGFSYSKTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICC 196 (437)
T ss_pred -CcEEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhccccc
Confidence 344443433334444322111 111233466666665443 3454555689999999999866555532 1
Q ss_pred -C-CcccEEEEcccCCC
Q 002209 781 -P-HLFCCGIARSGAYN 795 (953)
Q Consensus 781 -p-~~~~a~v~~~~~~d 795 (953)
+ =.++++++..|..|
T Consensus 197 ~~~inl~Gi~igng~td 213 (437)
T PLN02209 197 NPPINLQGYVLGNPITH 213 (437)
T ss_pred CCceeeeeEEecCcccC
Confidence 1 13788888888665
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=92.92 E-value=8.8 Score=43.52 Aligned_cols=141 Identities=13% Similarity=0.103 Sum_probs=82.0
Q ss_pred ceEEEEEc-CCceeEeCC---CCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEec--cCCCc
Q 002209 314 TQLVLVSL-DGTVKEIGP---PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELC--DLPLA 387 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~---~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~--~~~~~ 387 (953)
.+|.++.+ .++...+.- ....-.+.||-.-.+.+++....-. ..++..-+..+|+...+..+.+. ..+..
T Consensus 184 aNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s----~~g~~~~d~ciYE~~r~klqrvsvtsipL~ 259 (545)
T PF11768_consen 184 ANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSIS----VKGEPSADSCIYECSRNKLQRVSVTSIPLP 259 (545)
T ss_pred ccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecC----CCCCceeEEEEEEeecCceeEEEEEEEecC
Confidence 46777777 445555432 1344566777744444444432200 00111224556666655555443 32221
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCC
Q 002209 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDS 467 (953)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg 467 (953)
..+...+++|+.+.++.. -.++.+.++|. ......++........++|.|||
T Consensus 260 -----------s~v~~ca~sp~E~kLvlG-------------C~DgSiiLyD~----~~~~t~~~ka~~~P~~iaWHp~g 311 (545)
T PF11768_consen 260 -----------SQVICCARSPSEDKLVLG-------------CEDGSIILYDT----TRGVTLLAKAEFIPTLIAWHPDG 311 (545)
T ss_pred -----------CcceEEecCcccceEEEE-------------ecCCeEEEEEc----CCCeeeeeeecccceEEEEcCCC
Confidence 345678999999988887 44668899994 23344455556666779999999
Q ss_pred ceEEEEEecccCceEEEEEcCCC
Q 002209 468 LALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
..++..+..+ .|..+|..-
T Consensus 312 ai~~V~s~qG----elQ~FD~AL 330 (545)
T PF11768_consen 312 AIFVVGSEQG----ELQCFDMAL 330 (545)
T ss_pred cEEEEEcCCc----eEEEEEeec
Confidence 9888775443 455555544
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.80 E-value=14 Score=40.12 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=42.0
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
+-..+|.-+-+.|++.. +....|-+||+++|++...+...+.. +..+.|.|-.-.+..+
T Consensus 246 vl~Ls~n~~~~nVLaSg--------saD~TV~lWD~~~g~p~~s~~~~~k~----Vq~l~wh~~~p~~LLs 304 (463)
T KOG0270|consen 246 VLALSWNRNFRNVLASG--------SADKTVKLWDVDTGKPKSSITHHGKK----VQTLEWHPYEPSVLLS 304 (463)
T ss_pred HHHHHhccccceeEEec--------CCCceEEEEEcCCCCcceehhhcCCc----eeEEEecCCCceEEEe
Confidence 45678888888888854 34667888899999987776644433 8899999776544433
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.77 E-value=12 Score=43.71 Aligned_cols=67 Identities=7% Similarity=-0.097 Sum_probs=36.4
Q ss_pred ceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCce-EEeecccccCCeeeccCCce-EEEEEecccCc
Q 002209 403 SINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKLDLRYGGISWCDDSLA-LVYESWYKTRR 480 (953)
Q Consensus 403 ~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~-~l~~~~~~~~~~~~SpDg~~-l~~~~~~~~~~ 480 (953)
.++|+|.-+.++|.+ -...++++|+ +-.... .+.-..+...-+.|-||+++ ..|....++ .
T Consensus 235 ~faf~p~~rn~lfi~-------------~prellv~dl---e~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG-~ 297 (1062)
T KOG1912|consen 235 QFAFSPHWRNILFIT-------------FPRELLVFDL---EYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNG-R 297 (1062)
T ss_pred hhhcChhhhceEEEE-------------eccceEEEcc---hhhceeEEEEeccCCcceeEeccCCCcceEEEEecCC-e
Confidence 478899888888872 2336788885 222111 11222233445778888776 445443332 2
Q ss_pred eEEEEE
Q 002209 481 TRTWVI 486 (953)
Q Consensus 481 ~~l~~~ 486 (953)
..+|+-
T Consensus 298 ltirvr 303 (1062)
T KOG1912|consen 298 LTIRVR 303 (1062)
T ss_pred EEEEEe
Confidence 344443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.77 E-value=2.6 Score=47.67 Aligned_cols=45 Identities=9% Similarity=0.151 Sum_probs=28.7
Q ss_pred CcEEEEEEecCCccccccCCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002209 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (953)
Q Consensus 343 G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~ 416 (953)
|..|.+.+. ..|.+||.+. ..++++.-. .++.+.||+||+.+++.
T Consensus 117 G~LL~~~~~--------------~~i~~yDw~~~~~i~~i~v~---------------~vk~V~Ws~~g~~val~ 162 (443)
T PF04053_consen 117 GNLLGVKSS--------------DFICFYDWETGKLIRRIDVS---------------AVKYVIWSDDGELVALV 162 (443)
T ss_dssp SSSEEEEET--------------TEEEEE-TTT--EEEEESS----------------E-EEEEE-TTSSEEEEE
T ss_pred CcEEEEECC--------------CCEEEEEhhHcceeeEEecC---------------CCcEEEEECCCCEEEEE
Confidence 887777761 1599999984 445554431 23578999999988887
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.28 Score=45.93 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002209 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (953)
Q Consensus 738 ~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (953)
.....+...++.+.+... ..+|.+.|||+||.+|..++..
T Consensus 45 ~~~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 45 SLYDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 444556666666665543 3689999999999999888875
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=3.1 Score=48.97 Aligned_cols=107 Identities=14% Similarity=0.252 Sum_probs=61.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCc-eeeeecCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ-EIEIQGFPDG 188 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~-~~~l~~~~~~ 188 (953)
.+..+++|+||+.+|++..+ . . .+++-.+..++.... .+.+ + .+
T Consensus 364 ~~~s~avS~~g~~~A~v~~~-------------------------~-~------~l~vg~~~~~~~~~~~~~~~--~-~~ 408 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISAD-------------------------G-D------SVYVGSLTPGASIGVHSWGV--T-AD 408 (599)
T ss_pred CccceEEcCCCceEEEEcCC-------------------------C-c------EEEEeccCCCCcccccccee--e-cc
Confidence 45678899999999988653 1 1 456655422221000 1122 1 23
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccc-cccceEEecCCeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNA-IFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~-~~~~~~wspDg~~l~~~ 261 (953)
.....|+|.++| +|... +.+ .++...|+++.. +|+...+.. +. +.+ .+..+..|+||.++++.
T Consensus 409 ~~Lt~PS~d~~g-~vWtv-d~~----~~~~~vl~v~~~-~G~~~~V~~-~~--l~g~~I~~lrvSrDG~RvAvv 472 (599)
T PRK13613 409 GRLTSPSWDGRG-DLWVV-DRD----PADPRLLWLLQG-DGEPVEVRT-PE--LDGHRVVAVRVARDGVRVALI 472 (599)
T ss_pred CcccCCcCcCCC-CEEEe-cCC----CCCceEEEEEcC-CCcEEEeec-cc--cCCCEeEEEEECCCccEEEEE
Confidence 467889999998 66543 211 122223555553 556544433 21 111 37899999999998877
|
|
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.4 Score=45.78 Aligned_cols=43 Identities=19% Similarity=0.144 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 738 ~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
.....+...++..... ....+|.++|||+||.+|..++.....
T Consensus 9 ~~~~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~~ 51 (153)
T cd00741 9 SLANLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLRG 51 (153)
T ss_pred HHHHHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHHh
Confidence 3344444445444433 134699999999999999998886643
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.14 Score=52.04 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.1
Q ss_pred CCcEEEEEeChHHHHHHHHHH
Q 002209 758 PSKIAVGGHSYGAFMTANLLA 778 (953)
Q Consensus 758 ~~~i~l~G~S~GG~~a~~~a~ 778 (953)
..+|.++|||+||.++-.++.
T Consensus 77 ~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred cccceEEEecccHHHHHHHHH
Confidence 358999999999999977766
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.31 E-value=21 Score=39.51 Aligned_cols=161 Identities=18% Similarity=0.146 Sum_probs=79.6
Q ss_pred eEEEEEc-C-C-ceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCccc
Q 002209 315 QLVLVSL-D-G-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAED 389 (953)
Q Consensus 315 ~l~~~~~-~-g-~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~ 389 (953)
.+..++. . + ....+... ..+..+.|+|+++.++.... ....+.+|++..+ ....+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~----- 197 (466)
T COG2319 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS------------LDGTIKLWDLRTGKPLSTLAGH----- 197 (466)
T ss_pred cEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC------------CCCceEEEEcCCCceEEeeccC-----
Confidence 3445555 3 2 33333333 66778999999996665542 1348889999853 33333321
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE--EeecccccCCeeeccCC
Q 002209 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI--LHKLDLRYGGISWCDDS 467 (953)
Q Consensus 390 ~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~--l~~~~~~~~~~~~SpDg 467 (953)
...+..++|+|+++ .++.. . .....+.+|+. ..+.... +..+.... ...|++++
T Consensus 198 --------~~~v~~~~~~~~~~-~~~~~-~----------~~d~~i~~wd~---~~~~~~~~~~~~~~~~~-~~~~~~~~ 253 (466)
T COG2319 198 --------TDPVSSLAFSPDGG-LLIAS-G----------SSDGTIRLWDL---STGKLLRSTLSGHSDSV-VSSFSPDG 253 (466)
T ss_pred --------CCceEEEEEcCCcc-eEEEE-e----------cCCCcEEEEEC---CCCcEEeeecCCCCcce-eEeECCCC
Confidence 13346788999998 22221 0 22334446664 2222221 22222221 12799999
Q ss_pred ceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEE
Q 002209 468 LALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (953)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~ 527 (953)
..++..... ...++|.+.... ........+...+.. +.|+|++..++..
T Consensus 254 ~~~~~~~~d--~~~~~~~~~~~~---~~~~~~~~~~~~v~~------~~~~~~~~~~~~~ 302 (466)
T COG2319 254 SLLASGSSD--GTIRLWDLRSSS---SLLRTLSGHSSSVLS------VAFSPDGKLLASG 302 (466)
T ss_pred CEEEEecCC--CcEEEeeecCCC---cEEEEEecCCccEEE------EEECCCCCEEEEe
Confidence 655533222 223455444332 112222122222222 5688888777763
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=92.16 E-value=3.2 Score=45.57 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=35.2
Q ss_pred cCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCcc---------cc---CCCCCCCeEeccCCCEEE
Q 002209 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED---------VY---SDPGSPMMRRTSTGTYVI 525 (953)
Q Consensus 458 ~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~---------~~---~~~~~p~~~~SpDG~~l~ 525 (953)
+..+..|.|.|+|+++.|-.+ .++.+|.... .+++..-...... +. -..+..|++.|.||++|+
T Consensus 314 itDI~iSlDDrfLYvs~W~~G---dvrqYDISDP-~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHG---DVRQYDISDP-FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTT---EEEEEE-SST-TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred eEeEEEccCCCEEEEEcccCC---cEEEEecCCC-CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 456789999999999988663 6777777665 3555543211111 00 111345689999999999
Q ss_pred EEe
Q 002209 526 AKI 528 (953)
Q Consensus 526 ~~~ 528 (953)
++.
T Consensus 390 vTn 392 (461)
T PF05694_consen 390 VTN 392 (461)
T ss_dssp EE-
T ss_pred EEe
Confidence 885
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.07 E-value=3.9 Score=47.40 Aligned_cols=62 Identities=8% Similarity=-0.023 Sum_probs=36.4
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
.....|+|.++| ++....+ ++ ...+.... .+|+...+.- +.. ....+..+..|+||.++++.
T Consensus 373 ~~Lt~PS~d~~g-~vWtv~~------g~-~~~l~~~~-~~G~~~~v~v-~~~-~~~~I~~lrvSrDG~R~Avi 434 (557)
T PRK13615 373 PGLVAPSLDAQG-YVWSTPA------SD-PRGLVAWG-PDGVGHPVAV-SWT-ATGRVVSLEVARDGARVLVQ 434 (557)
T ss_pred CccccCcCcCCC-CEEEEeC------CC-ceEEEEec-CCCceEEeec-ccc-CCCeeEEEEeCCCccEEEEE
Confidence 357889999999 6665432 11 23333332 3455544321 111 11237799999999988876
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.97 E-value=4.2 Score=45.28 Aligned_cols=130 Identities=10% Similarity=0.068 Sum_probs=68.1
Q ss_pred eEEEEEc---CCc---eeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEE-eccCc-----eEEEe
Q 002209 315 QLVLVSL---DGT---VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVW-TTDGI-----FVREL 381 (953)
Q Consensus 315 ~l~~~~~---~g~---~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~-d~~g~-----~~~~l 381 (953)
+|++++- +|+ .+.+... .....+++.+|| |+++. . ..|+.+ +.++. +.+.|
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~-~-------------~~i~~~~d~~gdg~ad~~~~~l 111 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT-P-------------PDILFLRDKDGDDKADGEREVL 111 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC-C-------------CeEEEEeCCCCCCCCCCccEEE
Confidence 5666654 453 2344444 556788999999 44443 1 156655 44431 22223
Q ss_pred cc-CCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC-------cccccccCCeEEEEecCCCCCCCceEEee
Q 002209 382 CD-LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD-------AKVEVTPRDIIYTQQAEPVQGEGPEILHK 453 (953)
Q Consensus 382 ~~-~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~-------~~~~~~~~~~l~~~d~~~~~g~~~~~l~~ 453 (953)
.. .+.... ........+.|.|||+ |++..-...... ..........++.++. ++++.+.+..
T Consensus 112 ~~~~~~~~~------~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p---dg~~~e~~a~ 181 (367)
T TIGR02604 112 LSGFGGQIN------NHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP---DGGKLRVVAH 181 (367)
T ss_pred EEccCCCCC------cccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEec---CCCeEEEEec
Confidence 22 221100 0112345799999995 444321110000 0001122357888884 6666666666
Q ss_pred cccccCCeeeccCCceE
Q 002209 454 LDLRYGGISWCDDSLAL 470 (953)
Q Consensus 454 ~~~~~~~~~~SpDg~~l 470 (953)
+-.+...++|+++|+.+
T Consensus 182 G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 182 GFQNPYGHSVDSWGDVF 198 (367)
T ss_pred CcCCCccceECCCCCEE
Confidence 65566789999998753
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=91.95 E-value=17 Score=39.66 Aligned_cols=67 Identities=13% Similarity=0.067 Sum_probs=37.7
Q ss_pred cceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecc-cC---------CCccccccccceEEecCCeEEEEE
Q 002209 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLF-QS---------PDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 192 ~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt-~~---------~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
...++.+||..++- .... ........|+.++.+|...+++. .. .....|..++.++++|||+.|++.
T Consensus 88 Egi~~~~~g~~~is-~E~~--~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 88 EGIAVPPDGSFWIS-SEGG--RTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred hHeEEecCCCEEEE-eCCc--cCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 34566667754333 2110 00111388999998854333331 11 112345568899999999977766
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=91.89 E-value=2.3 Score=45.46 Aligned_cols=39 Identities=8% Similarity=0.266 Sum_probs=24.2
Q ss_pred cceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
..++.++.+..+..+.+..+-. .+..++||||+++|.++
T Consensus 131 ~~~~di~s~~~~~~~~~lGhvS-----ml~dVavS~D~~~Iita 169 (390)
T KOG3914|consen 131 VYSFDILSADSGRCEPILGHVS-----MLLDVAVSPDDQFIITA 169 (390)
T ss_pred ceeeeeecccccCcchhhhhhh-----hhheeeecCCCCEEEEe
Confidence 3344455544455555543322 15689999999999876
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=91.84 E-value=2.7 Score=43.75 Aligned_cols=116 Identities=13% Similarity=0.096 Sum_probs=60.2
Q ss_pred eEEEEEc-CCceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccC
Q 002209 315 QLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDI 390 (953)
Q Consensus 315 ~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~ 390 (953)
.|-+++. +++..+...+ .++.-..+ .|+.++..+.+. .|.+||+..+. .+.|..+.
T Consensus 341 TikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDn-------------tIRlwdi~~G~cLRvLeGHE----- 400 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN-------------TIRLWDIECGACLRVLEGHE----- 400 (499)
T ss_pred eEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCc-------------eEEEEeccccHHHHHHhchH-----
Confidence 4556666 6665444333 34433333 577776666444 89999998443 44443322
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE---------EeecccccCCe
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI---------LHKLDLRYGGI 461 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~---------l~~~~~~~~~~ 461 (953)
.-++-+.| |.++|+-. ...+.|.+||+ .++-.++. +..+.+.+..+
T Consensus 401 --------eLvRciRF--d~krIVSG-------------aYDGkikvWdl--~aaldpra~~~~~Cl~~lv~hsgRVFrL 455 (499)
T KOG0281|consen 401 --------ELVRCIRF--DNKRIVSG-------------AYDGKIKVWDL--QAALDPRAPASTLCLRTLVEHSGRVFRL 455 (499)
T ss_pred --------Hhhhheee--cCceeeec-------------cccceEEEEec--ccccCCcccccchHHHhhhhccceeEEE
Confidence 22344455 34555543 23456777876 22333322 22344455555
Q ss_pred eeccCCceEEEEEecc
Q 002209 462 SWCDDSLALVYESWYK 477 (953)
Q Consensus 462 ~~SpDg~~l~~~~~~~ 477 (953)
.| |..+|+..+.++
T Consensus 456 QF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 456 QF--DEFQIISSSHDD 469 (499)
T ss_pred ee--cceEEEeccCCC
Confidence 55 556666655444
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=9.9 Score=44.38 Aligned_cols=148 Identities=11% Similarity=0.116 Sum_probs=76.7
Q ss_pred eEEEEEcCCceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCcc
Q 002209 315 QLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIA 393 (953)
Q Consensus 315 ~l~~~~~~g~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~ 393 (953)
.|+.....+..+.+......+.++|+++| ++-...... +..|..+.-++. +....... ...
T Consensus 366 ~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~-----------~~~vv~~~~~g~~~~~~~~~~------~v~ 427 (573)
T PRK13614 366 TLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGG-----------NGRIVAYRPTGVAEGAQAPTV------TLT 427 (573)
T ss_pred EEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCC-----------CceEEEEecCCCcccccccce------eec
Confidence 45555554455555555567889999998 665443211 113433333221 11000000 000
Q ss_pred cccccc-CccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec-----ccccCCeeeccCC
Q 002209 394 FNSVRK-GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-----DLRYGGISWCDDS 467 (953)
Q Consensus 394 ~~~~~~-~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~-----~~~~~~~~~SpDg 467 (953)
.....+ .+..+..|+||-+++..++. +++.+|++.-+.....|.++.|+.. .....++.|..|+
T Consensus 428 ~~~l~g~~I~~lrvSrDG~R~Avi~~~----------~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~ 497 (573)
T PRK13614 428 ADWLAGRTVKELRVSREGVRALVISEQ----------NGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDS 497 (573)
T ss_pred ccccCCCeeEEEEECCCccEEEEEEEe----------CCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCC
Confidence 011112 26789999999999988432 2233455433211234555555432 2456678999999
Q ss_pred ceEEEEEecccCceEEEEEcCCCC
Q 002209 468 LALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
..++.....+ .+...+.+.++++
T Consensus 498 sl~V~~~~~~-~~~~~~~v~v~~g 520 (573)
T PRK13614 498 TVVVTKASAT-SNVVPELLSVDAG 520 (573)
T ss_pred EEEEEeccCC-CcceEEEEEeCCC
Confidence 8766654322 3345677776543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=91.80 E-value=1.9 Score=46.02 Aligned_cols=40 Identities=8% Similarity=-0.132 Sum_probs=27.0
Q ss_pred CCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCC
Q 002209 446 EGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
+..+.+..+-..+..++||||++.|.++..++ +|++....
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDE----kIRvs~yp 181 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDE----KIRVSRYP 181 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEecCCc----eEEEEecC
Confidence 44455556666677899999999888875433 56665543
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.73 E-value=6.9 Score=43.55 Aligned_cols=33 Identities=6% Similarity=-0.071 Sum_probs=25.4
Q ss_pred ceEEEEEc-CCceeEeCCC-CcccccccCCCCcEE
Q 002209 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l 346 (953)
+.+++++. +++.+.+..+ .+...++|+|+|+.+
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVF 198 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCCCccceECCCCCEE
Confidence 57899999 6667666665 666789999999764
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.74 Score=51.98 Aligned_cols=150 Identities=15% Similarity=0.086 Sum_probs=76.3
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCc---c--c---hHHHHHHHcC
Q 002209 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI---G--S---TSVLLWLARG 712 (953)
Q Consensus 641 ~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~---~--~---~~~~~la~~G 712 (953)
.+++....+..+..|++...+ ++. ..|+|+++-|||..+.-......-||-..... + . .....|.+.
T Consensus 41 y~~v~~~~~~~lfy~f~es~~-~~~---~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~- 115 (433)
T PLN03016 41 YIGIGEDENVQFFYYFIKSEN-NPK---EDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKM- 115 (433)
T ss_pred EEEecCCCCeEEEEEEEecCC-Ccc---cCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhc-
Confidence 344443345667777775432 222 37999999999876543222222233221100 0 0 001123433
Q ss_pred cEEEEcCCCCCCCCCChhhhhhh--HHHHHHHHHHHHHH-HHHcCCCCCCcEEEEEeChHHHHHHHHHHh----C-----
Q 002209 713 FAILGGPTTPIIGEGDEEANDRF--VEQLVACAEAAVEE-VVRRGVAHPSKIAVGGHSYGAFMTANLLAH----A----- 780 (953)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~--~~~~~~D~~~~~~~-l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~----~----- 780 (953)
..++..|..-..|+......... -...++|+..++.. +...+.....++.|+|.||||..+-.+|.. .
T Consensus 116 anllfiDqPvGtGfSy~~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~ 195 (433)
T PLN03016 116 ANIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCE 195 (433)
T ss_pred CcEEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccC
Confidence 33444343223344332211111 01223555555554 344454456789999999999876655542 1
Q ss_pred -CCcccEEEEcccCCC
Q 002209 781 -PHLFCCGIARSGAYN 795 (953)
Q Consensus 781 -p~~~~a~v~~~~~~d 795 (953)
+=.++++++..|..+
T Consensus 196 ~~inLkGi~iGNg~t~ 211 (433)
T PLN03016 196 PPINLQGYMLGNPVTY 211 (433)
T ss_pred CcccceeeEecCCCcC
Confidence 114788888888655
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=91.52 E-value=5.8 Score=44.91 Aligned_cols=142 Identities=10% Similarity=0.047 Sum_probs=83.0
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeec--ccCCCcc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIY 241 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--t~~~~~~ 241 (953)
||.++.++. ++...|.............||-...+.+++....-...+.-..+..+++...++.+++ +..+
T Consensus 185 Nl~L~~~~~----~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsip--- 257 (545)
T PF11768_consen 185 NLHLLSCSG----GKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIP--- 257 (545)
T ss_pred cEEEEEecC----CcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEe---
Confidence 788877743 3444444333333566778887444444444322011122234445566666655544 2222
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 321 (953)
+++.+..++++|+.++++... ..+.|.++|.
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC-------------------------------------------------~DgSiiLyD~ 288 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGC-------------------------------------------------EDGSIILYDT 288 (545)
T ss_pred cCCcceEEecCcccceEEEEe-------------------------------------------------cCCeEEEEEc
Confidence 222366889999999988772 2356778887
Q ss_pred -CCceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc
Q 002209 322 -DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (953)
Q Consensus 322 -~g~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 374 (953)
.+..+.....-....++|+|||..+++.+.. +++.+||+.
T Consensus 289 ~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~q-------------GelQ~FD~A 329 (545)
T PF11768_consen 289 TRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQ-------------GELQCFDMA 329 (545)
T ss_pred CCCeeeeeeecccceEEEEcCCCcEEEEEcCC-------------ceEEEEEee
Confidence 4433322222445778999999988887743 389999987
|
|
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.44 E-value=1.5 Score=49.23 Aligned_cols=150 Identities=14% Similarity=0.078 Sum_probs=81.7
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchH---HHHHHHcCcEEEE
Q 002209 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTS---VLLWLARGFAILG 717 (953)
Q Consensus 641 ~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~---~~~la~~G~~V~~ 717 (953)
-+.+....+..+..|++.-.. .+. .-|+|||+-|||.++.-......-||-.....+... .-.|.+.. .++.
T Consensus 48 Yv~v~~~~~~~LFYwf~eS~~-~P~---~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~a-NiLf 122 (454)
T KOG1282|consen 48 YVTVNESEGRQLFYWFFESEN-NPE---TDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEA-NILF 122 (454)
T ss_pred eEECCCCCCceEEEEEEEccC-CCC---CCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccc-cEEE
Confidence 455655678889988886442 232 368999999999886544333333443332111100 00122221 2222
Q ss_pred cCCCCCCCCCChhhhhh---hHHHHHHHHHHH-HHHHHHcCCCCCCcEEEEEeChHHHHHHHHH----HhC-----C-Cc
Q 002209 718 GPTTPIIGEGDEEANDR---FVEQLVACAEAA-VEEVVRRGVAHPSKIAVGGHSYGAFMTANLL----AHA-----P-HL 783 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~~---~~~~~~~D~~~~-~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a----~~~-----p-~~ 783 (953)
.+..-..|+..+..... --.....|...+ .+|+.+.+....+.+.|.|-||+|..+-.+| ... | --
T Consensus 123 Ld~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iN 202 (454)
T KOG1282|consen 123 LDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNIN 202 (454)
T ss_pred EecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCccc
Confidence 22222234333221111 112334555554 4567777777778999999999995554443 332 1 24
Q ss_pred ccEEEEcccCCC
Q 002209 784 FCCGIARSGAYN 795 (953)
Q Consensus 784 ~~a~v~~~~~~d 795 (953)
+|+.++..|+.|
T Consensus 203 LkG~~IGNg~td 214 (454)
T KOG1282|consen 203 LKGYAIGNGLTD 214 (454)
T ss_pred ceEEEecCcccC
Confidence 899999888766
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.42 E-value=20 Score=39.15 Aligned_cols=138 Identities=15% Similarity=0.181 Sum_probs=84.3
Q ss_pred ceEEEEEc-CCceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC--ceEEEeccCCCcc
Q 002209 314 TQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVRELCDLPLAE 388 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g--~~~~~l~~~~~~~ 388 (953)
..+.++|+ +|++...... +.+..+.|.|---.++.+.. +.+.+.+.|... ...+..
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs------------~D~~V~l~D~R~~~~s~~~w------- 326 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGS------------YDGTVALKDCRDPSNSGKEW------- 326 (463)
T ss_pred ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecc------------ccceEEeeeccCccccCceE-------
Confidence 45667888 8877766653 88899999996665555541 234677776651 000000
Q ss_pred cCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCc
Q 002209 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSL 468 (953)
Q Consensus 389 ~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~ 468 (953)
...+.+..++|.|......+. . ...+.|+-+|+ ...+.....+..++..++++.++..-.
T Consensus 327 -------k~~g~VEkv~w~~~se~~f~~-~-----------tddG~v~~~D~-R~~~~~vwt~~AHd~~ISgl~~n~~~p 386 (463)
T KOG0270|consen 327 -------KFDGEVEKVAWDPHSENSFFV-S-----------TDDGTVYYFDI-RNPGKPVWTLKAHDDEISGLSVNIQTP 386 (463)
T ss_pred -------EeccceEEEEecCCCceeEEE-e-----------cCCceEEeeec-CCCCCceeEEEeccCCcceEEecCCCC
Confidence 011234567787777654444 1 23457888886 223333455678888899999988877
Q ss_pred eEEEEEecccCceEEEEEcCCCC
Q 002209 469 ALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
.++.+...+ ....||.++.+.+
T Consensus 387 ~~l~t~s~d-~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 387 GLLSTASTD-KVVKLWKFDVDSP 408 (463)
T ss_pred cceeecccc-ceEEEEeecCCCC
Confidence 766554333 2247888876654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=91.16 E-value=7 Score=44.43 Aligned_cols=117 Identities=12% Similarity=0.141 Sum_probs=62.1
Q ss_pred cccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002209 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (953)
Q Consensus 333 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~ 412 (953)
++.++....-|.+|.....++ .||.|++.+-....+....+....-+ ...-..|||+..
T Consensus 273 G~~nL~lDssGt~L~AsCtD~-------------sIy~ynm~s~s~sP~~~~sg~~~~sf--------~vks~lSpd~~~ 331 (720)
T KOG0321|consen 273 GQVNLILDSSGTYLFASCTDN-------------SIYFYNMRSLSISPVAEFSGKLNSSF--------YVKSELSPDDCS 331 (720)
T ss_pred eeEEEEecCCCCeEEEEecCC-------------cEEEEeccccCcCchhhccCccccee--------eeeeecCCCCce
Confidence 345566666678888777554 89999997544443332221110000 011236888886
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccC--CceEEEEEecccCceEEEEEc
Q 002209 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD--SLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~~l~~~d 487 (953)
++-. +...+.|.|.+.. --..+..+..+...+..+.|+|. +..+.. +.+. ...+|.+.
T Consensus 332 l~Sg-------------Ssd~~ayiw~vs~-~e~~~~~l~Ght~eVt~V~w~pS~~t~v~Tc-SdD~--~~kiW~l~ 391 (720)
T KOG0321|consen 332 LLSG-------------SSDEQAYIWVVSS-PEAPPALLLGHTREVTTVRWLPSATTPVATC-SDDF--RVKIWRLS 391 (720)
T ss_pred Eecc-------------CCCcceeeeeecC-ccCChhhhhCcceEEEEEeeccccCCCceee-ccCc--ceEEEecc
Confidence 6544 3344556655400 11223345666667778888764 444433 3322 23677763
|
|
| >smart00824 PKS_TE Thioesterase | Back alignment and domain information |
|---|
Probab=90.83 E-value=2.1 Score=42.98 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=25.6
Q ss_pred CCcEEEEEeChHHHHHHHHHHh---CCCcccEEEEcc
Q 002209 758 PSKIAVGGHSYGAFMTANLLAH---APHLFCCGIARS 791 (953)
Q Consensus 758 ~~~i~l~G~S~GG~~a~~~a~~---~p~~~~a~v~~~ 791 (953)
..++.++|||+||.++..++.+ .+..+..++...
T Consensus 63 ~~~~~l~g~s~Gg~~a~~~a~~l~~~~~~~~~l~~~~ 99 (212)
T smart00824 63 GRPFVLVGHSSGGLLAHAVAARLEARGIPPAAVVLLD 99 (212)
T ss_pred CCCeEEEEECHHHHHHHHHHHHHHhCCCCCcEEEEEc
Confidence 3578999999999999888875 334566666554
|
Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa. |
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=90.77 E-value=18 Score=42.09 Aligned_cols=134 Identities=10% Similarity=0.021 Sum_probs=72.8
Q ss_pred CCceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccC
Q 002209 322 DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 322 ~g~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
.+..+.+......+.++|+++| ++-...... ...+.... .++...+.. +.. ....
T Consensus 363 ~~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~-------------~~~l~~~~~~G~~~~v~v-~~~---------~~~~ 418 (557)
T PRK13615 363 DRDAVLLDTRPGLVAPSLDAQG-YVWSTPASD-------------PRGLVAWGPDGVGHPVAV-SWT---------ATGR 418 (557)
T ss_pred CCcceeeccCCccccCcCcCCC-CEEEEeCCC-------------ceEEEEecCCCceEEeec-ccc---------CCCe
Confidence 4455555444567889999998 665443211 11222221 123222211 111 1123
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE-ee------cccccCCeeeccCCceEEEE
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HK------LDLRYGGISWCDDSLALVYE 473 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l-~~------~~~~~~~~~~SpDg~~l~~~ 473 (953)
+..+..|+||-+++..++. .+..+|++.-+.. +++.++.| +. ......++.|..|++.++..
T Consensus 419 I~~lrvSrDG~R~Avi~~~----------~g~~~V~va~V~R-~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 419 VVSLEVARDGARVLVQLET----------GAGPQLLVASIVR-DGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred eEEEEeCCCccEEEEEEec----------CCCCEEEEEEEEe-CCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEe
Confidence 5679999999999998543 2234565543312 34444445 32 23355678999999865655
Q ss_pred EecccCceEEEEEcCCCC
Q 002209 474 SWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 474 ~~~~~~~~~l~~~d~~~~ 491 (953)
...+ .+..++++.+++.
T Consensus 488 ~~~~-~~~~v~~v~v~g~ 504 (557)
T PRK13615 488 LAPD-GERQVELHQVGGP 504 (557)
T ss_pred ccCC-CCceEEEEECCCc
Confidence 3222 3346788888764
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.76 Score=38.75 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=32.5
Q ss_pred ccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEe
Q 002209 312 ATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSI 351 (953)
Q Consensus 312 ~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~ 351 (953)
..++|+.+|. +++.+.+..+ .....+++|||++.|+++..
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 5689999999 8888888777 77889999999999998863
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.24 Score=51.93 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcc-cCCCCC------CCCcC---------
Q 002209 740 VACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS-GAYNRT------LTPFG--------- 802 (953)
Q Consensus 740 ~~D~~~~~~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~-~~~d~~------~~~~~--------- 802 (953)
+.-+..|++...+. ..+.-++..|.|.|--|+.+...|..+|. +.|+|..+ -..+.. +..++
T Consensus 214 v~a~srAMdlAq~eL~q~~Ik~F~VTGaSKRgWttwLTAIaDpr-v~aIvp~v~D~Lni~a~L~hiyrsYGgnwpi~l~p 292 (507)
T COG4287 214 VYAVSRAMDLAQDELEQVEIKGFMVTGASKRGWTTWLTAIADPR-VFAIVPFVYDNLNIEAQLLHIYRSYGGNWPIKLAP 292 (507)
T ss_pred HHHHHHHHHHHHhhhhheeeeeEEEeccccchHHHHHHHhcCcc-hhhhhhhHHhhcccHHHHHHHHHhhCCCCCcccch
Confidence 34444455444332 33445689999999999999999999975 55544432 111110 00011
Q ss_pred ccccc-chhhhh---HHHHHhcCccccc-----CCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002209 803 FQNED-RTLWEA---TSTYVEMSPFMSA-----NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (953)
Q Consensus 803 ~~~~~-~~~~~~---~~~~~~~sp~~~~-----~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (953)
|..+. ...-+. .....-.+|+.+. .++..|-+|+.+..|...+ ++.+.-+|..|... +-+...|++
T Consensus 293 yyaegi~erl~tp~fkqL~~IiDPlay~~try~~RLalpKyivnaSgDdff~--pDsa~lYyd~LPG~---kaLrmvPN~ 367 (507)
T COG4287 293 YYAEGIDERLETPLFKQLLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFV--PDSANLYYDDLPGE---KALRMVPND 367 (507)
T ss_pred hHhhhHHHhhcCHHHHHHHHhhcHHHHhhhhhhhhccccceeecccCCcccC--CCccceeeccCCCc---eeeeeCCCC
Confidence 00000 000001 1112223565554 6778899999999999887 88888888888654 568889999
Q ss_pred CccCC
Q 002209 874 SHGYA 878 (953)
Q Consensus 874 ~H~~~ 878 (953)
.|...
T Consensus 368 ~H~~~ 372 (507)
T COG4287 368 PHNLI 372 (507)
T ss_pred cchhh
Confidence 99874
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.10 E-value=7.9 Score=39.94 Aligned_cols=29 Identities=7% Similarity=0.018 Sum_probs=22.8
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCcccc
Q 002209 109 PPLPALSFSPQRDKILFLKRRALPPLEEL 137 (953)
Q Consensus 109 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~ 137 (953)
..+..+.|+|.|..++..+.+....++.+
T Consensus 191 GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 191 GSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred cceeeEEeccccceEEEccCCcchHHHHH
Confidence 35778999999999998888766666653
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=89.98 E-value=7.2 Score=42.62 Aligned_cols=80 Identities=16% Similarity=0.069 Sum_probs=41.1
Q ss_pred cceeeccCCCCceEEEEeccCCC---cccccccCCeEEEEecCCCCCC-------------CceEEeecccccCCeeecc
Q 002209 402 RSINWRSDKPSTLYWAETQDGGD---AKVEVTPRDIIYTQQAEPVQGE-------------GPEILHKLDLRYGGISWCD 465 (953)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~---~~~~~~~~~~l~~~d~~~~~g~-------------~~~~l~~~~~~~~~~~~Sp 465 (953)
..++|.||| .|++.+ .+..+ ..........|+.++. +|. ..+.+..+-.+...++|.|
T Consensus 117 ~~l~fgpDG-~LYvs~--G~~~~~~~~~~~~~~~G~ilri~~---dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~ 190 (331)
T PF07995_consen 117 GGLAFGPDG-KLYVSV--GDGGNDDNAQDPNSLRGKILRIDP---DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDP 190 (331)
T ss_dssp EEEEE-TTS-EEEEEE--B-TTTGGGGCSTTSSTTEEEEEET---TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEET
T ss_pred ccccCCCCC-cEEEEe--CCCCCcccccccccccceEEEecc---cCcCCCCCccccCCCceEEEEEeCCCccccEEEEC
Confidence 469999999 344332 22221 1112234568888885 433 3445555666667789999
Q ss_pred CCceEEEEEecccCceEEEEEc
Q 002209 466 DSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d 487 (953)
....|+...+......+|.++.
T Consensus 191 ~tg~l~~~d~G~~~~dein~i~ 212 (331)
T PF07995_consen 191 NTGRLWAADNGPDGWDEINRIE 212 (331)
T ss_dssp TTTEEEEEEE-SSSSEEEEEE-
T ss_pred CCCcEEEEccCCCCCcEEEEec
Confidence 8444555544333334566654
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.63 Score=52.07 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=52.5
Q ss_pred hHHHHHHHcCcEE----EEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH
Q 002209 703 TSVLLWLARGFAI----LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA 778 (953)
Q Consensus 703 ~~~~~la~~G~~V----~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~ 778 (953)
.....|.+.||.. +..+| |.+ .... .....+..+...|+.+.+.. ..++.|+||||||.++..++.
T Consensus 69 ~li~~L~~~GY~~~~~l~~~pY-DWR-----~~~~-~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~~~fl~ 138 (389)
T PF02450_consen 69 KLIENLEKLGYDRGKDLFAAPY-DWR-----LSPA-ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVARYFLQ 138 (389)
T ss_pred HHHHHHHhcCcccCCEEEEEee-chh-----hchh-hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHHHHHHH
Confidence 4566788877765 33222 221 1111 12334455556666554432 479999999999999999888
Q ss_pred hCCC------cccEEEEcccCCC
Q 002209 779 HAPH------LFCCGIARSGAYN 795 (953)
Q Consensus 779 ~~p~------~~~a~v~~~~~~d 795 (953)
..+. .++..|.+++.+.
T Consensus 139 ~~~~~~W~~~~i~~~i~i~~p~~ 161 (389)
T PF02450_consen 139 WMPQEEWKDKYIKRFISIGTPFG 161 (389)
T ss_pred hccchhhHHhhhhEEEEeCCCCC
Confidence 7643 4888999887643
|
3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process |
| >KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.40 E-value=1.6 Score=50.95 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHcC----CCC---CCcEEEEEeChHHHHHHHHHHhC
Q 002209 736 VEQLVACAEAAVEEVVRRG----VAH---PSKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 736 ~~~~~~D~~~~~~~l~~~~----~~d---~~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
...-.+-+.+|+.++.+++ .-+ |..|+++||||||.+|..++...
T Consensus 152 l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlk 203 (973)
T KOG3724|consen 152 LLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTLK 203 (973)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhhh
Confidence 3444555666777776542 223 56799999999999998877653
|
|
| >PLN02454 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=89.26 E-value=0.75 Score=50.56 Aligned_cols=42 Identities=21% Similarity=0.197 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002209 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (953)
Q Consensus 738 ~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (953)
...+++...++.+.+.+.-..-+|.++|||+||.+|+.+|..
T Consensus 207 S~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 207 SARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHH
Confidence 455666677777776642222259999999999999988854
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 953 | ||||
| 2ecf_A | 741 | Crystal Structure Of Dipeptidyl Aminopeptidase Iv F | 6e-08 | ||
| 2gbc_A | 730 | Native Dpp-Iv (Cd26) From Rat Length = 730 | 1e-04 | ||
| 3o4j_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 4e-04 |
| >pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From Stenotrophomonas Maltophilia Length = 741 | Back alignment and structure |
|
| >pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat Length = 730 | Back alignment and structure |
|
| >pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 953 | |||
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 4e-32 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 3e-31 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 1e-25 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 4e-24 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 1e-20 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 2e-20 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 1e-19 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 2e-19 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 1e-18 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 2e-18 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 3e-17 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 6e-14 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 2e-12 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 4e-12 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 3e-11 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 3e-11 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 2e-10 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 3e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-04 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 9e-10 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 1e-09 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 1e-09 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 5e-09 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 8e-08 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 1e-07 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 2e-07 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 2e-07 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 2e-07 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 3e-07 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 2e-06 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 2e-06 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 3e-06 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 7e-06 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 8e-06 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 8e-04 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 2e-05 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 2e-05 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 3e-05 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 5e-05 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 9e-05 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 1e-04 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 1e-04 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 2e-04 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 3e-04 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 3e-04 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 6e-04 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 8e-04 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 8e-04 |
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 4e-32
Identities = 58/315 (18%), Positives = 100/315 (31%), Gaps = 47/315 (14%)
Query: 606 TENTQYYIQSWPDKKSCQITDFPHPYPQLASLQK-ELIKYQRKDGVQLSATLYLPPG--Y 662
+ ++ I A + ++ + DG ++ A +Y P +
Sbjct: 357 RTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIYPPHSPDF 416
Query: 663 DPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL----GG 718
D P + ++ G R + + +RG + GG
Sbjct: 417 TGPADELPPYVVMAHGG--------PTSRVPAVLDLDV-----AYFTSRGIGVADVNYGG 463
Query: 719 PTTPIIGEGDE--EANDRF-----VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAF 771
T G G E VE A A A E G A +++AV G S G +
Sbjct: 464 ST----GYGRAYRERLRGRWGVVDVEDCAAVATALAE----EGTADRARLAVRGGSAGGW 515
Query: 772 MTANLLAHAPHLFCCGIARSGAYN---------RTLTPFGFQNEDRTLWEATSTYVEMSP 822
A+ L ++ CG + + E Y + +P
Sbjct: 516 TAASSLVS-TDVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSFEEFPERYRDRAP 574
Query: 823 FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES 882
A++++ P LL+ G ED Q DRF A+ G G + E HG+ +E+
Sbjct: 575 LTRADRVRVPFLLLQGLEDPV--CPPEQCDRFLEAVAGCGVPHAYLSFEGEGHGFRRKET 632
Query: 883 IMHVLWETDRWLQKY 897
++ L +
Sbjct: 633 MVRALEAELSLYAQV 647
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 3e-31
Identities = 90/722 (12%), Positives = 171/722 (23%), Gaps = 188/722 (26%)
Query: 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN 253
+ DG L S + ++ D G+ L + P
Sbjct: 27 LQGVVDGDKLLVV------GFSEGSVNAYL--YDGGETVKLNREPIN-----SVLDPHYG 73
Query: 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYAT 313
+++ E
Sbjct: 74 VGRVIL----------------------------------VRDVSKGAEQ---------- 89
Query: 314 TQLVLVSLDGTVKEIG--PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVW 371
L V+ +E L + ++ + +
Sbjct: 90 HALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYA----------L 139
Query: 372 TTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTP 431
G+ REL LP + + + + +L+ + GG
Sbjct: 140 DGGGL--RELARLP---GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-------- 186
Query: 432 RDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491
+ + + S R R + P
Sbjct: 187 ----------------LRVFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPRDG 228
Query: 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNI 551
V + S+D S + + +A + + + P+GN
Sbjct: 229 SVED---LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFIDGERVEAPQGNH 285
Query: 552 PFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQY 611
+ + K + S T +
Sbjct: 286 GRVV--------------LWRGKLV---TSHTSLSTPPRIVS------------------ 310
Query: 612 YIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLP 671
P + P + + L+ + DG ++ + P P
Sbjct: 311 ----LPSGEPLLEGGLPEDLRRSIA-GSRLVWVESFDGSRVPTYVLESGR----APTPGP 361
Query: 672 CLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL----GGPTTPIIGEG 727
+ + G S + A GF ++ G T G G
Sbjct: 362 TVVLVHGG--------PFAEDSDSWDTFAA-----SLAAAGFHVVMPNYRGST----GYG 404
Query: 728 DE--EANDRF-----VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780
+E +E + A A A E G+A S++ + G+SYG +MT L
Sbjct: 405 EEWRLKIIGDPCGGELEDVSAAARWARE----SGLA--SELYIMGYSYGGYMTLCALTMK 458
Query: 781 PHLFCCGIARSGAYN-----RTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILL 835
P LF G+A + + ++ + SP +++K+P+ L
Sbjct: 459 PGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLAL 518
Query: 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895
+H + + T R L G I+P H E + +L +L
Sbjct: 519 IHPQNASR--TPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLA 576
Query: 896 KY 897
Sbjct: 577 TQ 578
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 41/299 (13%), Positives = 82/299 (27%), Gaps = 44/299 (14%)
Query: 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL 707
+LS TL P G P + + + G + R
Sbjct: 14 GQDELSGTLLTPTGM--------PGVLFVHGW--------GGSQHHSLVRAR-------E 50
Query: 708 WLARGFAIL-----GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIA 762
+ G + G Q + +AA +++ IA
Sbjct: 51 AVGLGCICMTFDLRGH------EGYASMRQSVTRAQNLDDIKAAYDQLASLPYVDAHSIA 104
Query: 763 VGGHSYGAFMTANLLAHAPHLFCCGIA----RSGAYNRTLTPFGFQNEDRTLWEATSTYV 818
V G SYG +++A L P + + + +++ +
Sbjct: 105 VVGLSYGGYLSALLTRERPVEWLALRSPALYKDAHWDQPKVSLNADPDLMDYRRRALAPG 164
Query: 819 EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878
+ + + K +LLV E D + +A + ++ H +
Sbjct: 165 DNLALAACAQYKGDVLLVEAENDVI--VPHPVMRNYADAFT-NARSLTSRVIAGADHALS 221
Query: 879 ARESIMHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTE 937
+E WL + V + ++ ++ + Q V+ G G E
Sbjct: 222 VKEHQQEYTRALIDWLTEMVVGRRIALAKEVVAAR---KQLLKEQQGDAVSLPGQGSRE 277
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 42/287 (14%), Positives = 79/287 (27%), Gaps = 57/287 (19%)
Query: 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR 699
+ Y+ +++ +P +GP P + Y G G +E
Sbjct: 57 YRLTYKSFGNARITGWYAVPDK-----EGPHPAIVK-YHG------YNASYDGEIHEM-- 102
Query: 700 IGSTSVLLWLARGFAIL----------GGPTTPIIGE-------GDEEANDRFVEQLVAC 742
+ W G+A + G G + + + +
Sbjct: 103 ------VNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLD 156
Query: 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN----RTL 798
A A+E + ++I V G S G +T A + N +
Sbjct: 157 AVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDV 216
Query: 799 TPFGFQNEDR----------TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLT 848
E T +A T A+++K P+L+ G D T
Sbjct: 217 ALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKV--TPP 274
Query: 849 MQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895
+N L+ L + + H Y + + + L+
Sbjct: 275 STVFAAYNHLETKK---ELKVYRYFGHEYIPAFQTEKLAF-FKQILK 317
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 1e-20
Identities = 114/762 (14%), Positives = 223/762 (29%), Gaps = 146/762 (19%)
Query: 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAI 245
G +N + S DG+ + + S + D++ + + P+
Sbjct: 59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVT 118
Query: 246 F----DNFVWVNNSTLLVCTIPLLRGDPPKKPLVPL----GPKMQSNEKRDIIQVRTFQD 297
+ +V N+ + V P P + + N D +
Sbjct: 119 WSPVGHKLAYVWNNDIYVK-------IEPNLPSYRITWTGKEDIIYNGITDWV------- 164
Query: 298 LLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPS--PDEKYILISSIHRPY 355
Y+E++F Y+ S +G + Y + + P +Y S Y
Sbjct: 165 -----YEEEVFSAYSALWW---SPNG--TFL----AYAQFNDTEVPLIEYSFYSDESLQY 210
Query: 356 SFIVPCGRFPR--------QVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR 407
V +P+ + V TD + + P + + + W
Sbjct: 211 PKTVRV-PYPKAGAVNPTVKFFVVNTDSLSSVTN-ATSIQITAPASMLIGDHYLCDVTWA 268
Query: 408 SDKPSTLYWA-ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466
+ + +L W Q+ ++ + G ++ + + W
Sbjct: 269 TQERISLQWLRRIQN----------YSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR 318
Query: 467 SLALVYESWYKTRRTRTWVISP-GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVI 525
+ + G + + + T GT+ +
Sbjct: 319 FRPSEPHFTLDGNSFYKIISNEEGYRHIC-----------YFQIDKKDCTFITK-GTWEV 366
Query: 526 AKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI------WESDKEKYYETT 579
I+ + Y + N P G +L+ I ++ ++ +YY +
Sbjct: 367 IGIEALTSDYLYYISNEYKGMPGGR----NLYKIQLIDYTKVTCLSCELNPERCQYYSVS 422
Query: 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQ- 638
+ + S DK + D L ++Q
Sbjct: 423 FSKEAKY-----------YQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQM 471
Query: 639 -KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 697
+ + + + + + LPP +D SK P L Y G + + F
Sbjct: 472 PSKKLDFIILNETKFWYQMILPPHFDKSK--KYPLLLDVYAGP-----CSQKAD---TVF 521
Query: 698 PRIGSTSVLLWLARGFAI--LGGPTTPIIGE----------GDEEANDRFVEQLVACAEA 745
R+ + L + G + G+ G E D Q+
Sbjct: 522 -RLNWATYLA-STENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVED----QI-----E 570
Query: 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG-----AYNRTLTP 800
A + + G +IA+ G SYG ++T+ +L +F CGIA + Y+ T
Sbjct: 571 AARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYT- 629
Query: 801 FGFQNE----DRTLWEATSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFF 855
E T + Y + A K LL+HG D+N QS +
Sbjct: 630 -----ERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDN--VHFQQSAQIS 682
Query: 856 NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
AL G + + E HG A+ + H+ ++++
Sbjct: 683 KALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQC 724
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 2e-20
Identities = 38/281 (13%), Positives = 75/281 (26%), Gaps = 41/281 (14%)
Query: 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFW--------SYPGEFKSKDAAGQV--- 690
+ + G ++ L +P ++ LPC+ +P ++ + G +
Sbjct: 71 VTFSGYRGQRIKGWLLVPKL----EEEKLPCVVQYIGYNGGRGFPHDWLFWPSMGYICFV 126
Query: 691 ---RGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAV 747
RG + + + + G P G D + ++ A AV
Sbjct: 127 MDTRGQGSGWLKGDTPD----YPEGPVDPQYPGFMTRGILDPR--TYYYRRVFTDAVRAV 180
Query: 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-------- 799
E +I + G S G + + A + +
Sbjct: 181 EAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRRAVQLVDTHP 240
Query: 800 ----PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855
+ T A + K P L G DN T+ F
Sbjct: 241 YAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTV-----F 295
Query: 856 NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896
A + + I P+ +H + + + +K
Sbjct: 296 AAYNYYAGPKEIRIYPYNNHEGGGSFQAVEQVKFLKKLFEK 336
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 1e-19
Identities = 35/285 (12%), Positives = 74/285 (25%), Gaps = 62/285 (21%)
Query: 628 PHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAA 687
+ ++ + + + G ++ A P +G P L + G
Sbjct: 72 ESSFQ-VSFAECYDLYFTGVRGARIHAKYIKPKT-----EGKHPALIR-FHG-------Y 117
Query: 688 GQVRGSPNEFPRIGSTSVLLWLARGFAIL-------GGPTTPIIGEGDEEANDRFVEQLV 740
G N+ L ++A GF ++ GG + + G N + L
Sbjct: 118 SSNSGDWNDK--------LNYVAAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGHIIRGLD 169
Query: 741 ACAE------------AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788
A+ V+ ++ V G S G ++ A P +
Sbjct: 170 DDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVRKVVS 229
Query: 789 ARSGAYNRTLT------------PFGFQNEDRTLWEATSTYVEMSPFMS----ANKLKKP 832
+ + E + ++ A ++K
Sbjct: 230 EYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGD 289
Query: 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877
+L+ G D +N + + + + P H
Sbjct: 290 VLMCVGLMDQV--CPPSTVFAAYNNI---QSKKDIKVYPDYGHEP 329
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 2e-19
Identities = 71/310 (22%), Positives = 114/310 (36%), Gaps = 75/310 (24%)
Query: 624 ITDFPHPYPQLASLQK--ELIKYQRKDG-VQLSATLYLPPGYDPSKDGPLPCLFWSYPGE 680
+ D HPY + Q+ E DG L+ ++ P G+DP+K P + Y G
Sbjct: 470 LADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAGFDPAK--RYPVAVYVYGGP 527
Query: 681 FKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAI--LGGPTTPIIGE----------G 727
A+ V + +P G +LA +G+ + L TP G G
Sbjct: 528 -----ASQTV---TDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGALYGKQG 579
Query: 728 DEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787
E D QL V + ++ P++I V G S G +MT LLA A + CG
Sbjct: 580 TVEVAD----QL-----RGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACG 630
Query: 788 IARSGA---------------YNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKP 832
+A GA Y +N+ Y E L+ P
Sbjct: 631 VA--GAPVTDWGLYDSHYTERYMDLPA----RNDAG--------YREARVLTHIEGLRSP 676
Query: 833 ILLVHGEEDNN---SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889
+LL+HG D+N + + +AL+ G L+ P HG + +++ +
Sbjct: 677 LLLIHGMADDNVLFTNST-----SLMSALQKRGQPFELMTYPGAKHGLSGADALH--RYR 729
Query: 890 T-DRWLQKYC 898
+ +L +
Sbjct: 730 VAEAFLGRCL 739
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 1e-18
Identities = 73/418 (17%), Positives = 129/418 (30%), Gaps = 70/418 (16%)
Query: 507 YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLF--DINTGSK 564
Y + ++G + I + + + N P +++ I +
Sbjct: 341 YIKDTVENAIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRR----NIYRISIGSYPP 396
Query: 565 ERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQI 624
+ + + S Y D++ +
Sbjct: 397 SKKCVTCHLRKERCQYYTASFSDYAKYYAL------VCYGPGIPISTLHDGRTDQEIKIL 450
Query: 625 TDFPHPYPQLASLQKELIKYQ--RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFK 682
+ L ++Q + + D + L + LPP +D SK P L Y G
Sbjct: 451 EENKELENALKNIQLPKEEIKKLEVDEITLWYKMILPPQFDRSK--KYPLLIQVYGGP-- 506
Query: 683 SKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI--LGGPTTPIIGE----------GDEE 730
+ V + F + S L G I + G T G+ G E
Sbjct: 507 ---CSQSV---RSVF-AVNWISYLA-SKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYE 558
Query: 731 ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790
D Q+ AV + + G +IA+ G SYG ++++ LA LF CGIA
Sbjct: 559 VED----QI-----TAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAV 609
Query: 791 SG---------AYN-RTL-TPFGFQNEDRTLWEATSTYVEMSPFMSANKLK-KPILLVHG 838
+ Y R + P N + Y + A + LL+HG
Sbjct: 610 APVSSWEYYASVYTERFMGLPTKDDNLEH--------YKNSTVMARAEYFRNVDYLLIHG 661
Query: 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896
D+N S + AL + + ++HG + S H+ +L++
Sbjct: 662 TADDN--VHFQNSAQIAKALVNAQVDFQAMWYSDQNHGL-SGLSTNHLYTHMTHFLKQ 716
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 2e-18
Identities = 57/316 (18%), Positives = 99/316 (31%), Gaps = 63/316 (19%)
Query: 609 TQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDG-VQLSATLYLPPGYDPSKD 667
+ + + K S + + +P A + DG L L +P +DP+K
Sbjct: 426 RKVTVTN-IGKGSHTLLEAKNPDTGYAMPEIRTGTIMAADGQTPLYYKLTMPLHFDPAK- 483
Query: 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAI--LGGPTTPII 724
P + + Y G + + R +++A +G+A+ + +
Sbjct: 484 -KYPVIVYVYGG--------PHAQLVTKTW-RSSVGGWDIYMAQKGYAVFTVDSRGSANR 533
Query: 725 GE----------GDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA 774
G G E D Q+ V+ + + +I V G SYG FMT
Sbjct: 534 GAAFEQVIHRRLGQTEMAD----QM-----CGVDFLKSQSWVDADRIGVHGWSYGGFMTT 584
Query: 775 NLLAHAPHLFCCGIARSG---------AYN-RTLTPFGFQNEDRTLWEATSTYVEMSPFM 824
NL+ +F G+A Y R E Y +
Sbjct: 585 NLMLTHGDVFKVGVAGGPVIDWNRYAIMYGERYF---------DAPQENPEGYDAANLLK 635
Query: 825 SANKLKKPILLVHGEEDNN---SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881
A LK ++L+HG D +L F +A + P H +
Sbjct: 636 RAGDLKGRLMLIHGAIDPVVVWQHSL-----LFLDACVKARTYPDYYVYPSHEHNVMGPD 690
Query: 882 SIMHVLWETDRWLQKY 897
+ H+ R+ +
Sbjct: 691 RV-HLYETITRYFTDH 705
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 3e-17
Identities = 48/319 (15%), Positives = 87/319 (27%), Gaps = 63/319 (19%)
Query: 609 TQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQ--RKDGVQLSATLYLPPGYDPSK 666
+ KK + H + Q ++Y+ D L + P + +
Sbjct: 435 MVTVHNTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEIDDYNLPMQILKPATFTDTT 494
Query: 667 DGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAI--LGGPTTPI 723
P L + V + ++ G + G +
Sbjct: 495 --HYPLLLVVDGT-----PGSQSVAEKFEVSWE------TVMVSSHGAVVVKCDGRGSGF 541
Query: 724 IGE----------GDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMT 773
G G E D Q+ AV +++ +++AV G YG +++
Sbjct: 542 QGTKLLHEVRRRLGLLEEKD----QM-----EAVRTMLKEQYIDRTRVAVFGKDYGGYLS 592
Query: 774 ANLLAHAP----HLFCCGIARSG---------AYN-RTLTPFGFQNEDRTLWEATSTYVE 819
+L F CG A S A++ R L Y
Sbjct: 593 TYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYL---------GLHGLDNRAYEM 643
Query: 820 MSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878
+ L++ L++H D + L A L I P ESH +
Sbjct: 644 TKVAHRVSALEEQQFLIIHPTADEK--IHFQHTAELITQLIRGKANYSLQIYPDESHYFT 701
Query: 879 ARESIMHVLWETDRWLQKY 897
+ H+ + +
Sbjct: 702 SSSLKQHLYRSIINFFVEC 720
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 6e-14
Identities = 65/409 (15%), Positives = 121/409 (29%), Gaps = 96/409 (23%)
Query: 505 DVYSDPGSPMMRRTSTGTYVIA----KIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN 560
V G RT T Y N+ G Y++L L D++
Sbjct: 44 SVKVKTGDTYSSRTITKVYANNSGGLSFSIFNNRGKYVVLE------------LSTEDLH 91
Query: 561 TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620
+ + ++ + + D ++QL + + + + D+K
Sbjct: 92 SNT------------IVFGPNFLNTRMKLDYIVSQLVPIFDVDGNE--VEPFTSKQTDEK 137
Query: 621 SCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGE 680
I DF + GV++ L++P +P + PL + + + G
Sbjct: 138 HLIIDDF-----------LAFTFKDPETGVEIPYRLFVPKDVNPDRKYPL--VVFLH-G- 182
Query: 681 FKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG-----PTTPIIG----EGDEEA 731
AG+ RG+ N G+ ++W + ++ P P +
Sbjct: 183 ------AGE-RGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDRE 235
Query: 732 NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791
N E+ + + +++ ++I + G S G + T + P LF I
Sbjct: 236 NPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPIC 295
Query: 792 GAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQ 850
G + ++K PI + H E+D
Sbjct: 296 GGGD---------------------------VSKVERIKDIPIWVFHAEDDPVV--PVEN 326
Query: 851 SDRFFNALKGHGALCRLVILP---FESHGYAARESIMHVLWETD--RWL 894
S L G R E HG+ S + + WL
Sbjct: 327 SRVLVKKLAEIGGKVRYTEYEKGFMEKHGWDPHGSWIPTYENQEAIEWL 375
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238 | Back alignment and structure |
|---|
Score = 67.5 bits (164), Expect = 2e-12
Identities = 32/199 (16%), Positives = 54/199 (27%), Gaps = 18/199 (9%)
Query: 707 LWLARGFAIL-------GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPS 759
+ RGF +L G P + + E A
Sbjct: 46 GYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGL 105
Query: 760 KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819
+ + G S GAF+ LLA + L + L +
Sbjct: 106 PLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKLPQGQVVEDPGVL-----ALYQ 160
Query: 820 MSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878
P P+L +HG D+ + ++ AL+ H RL E G+
Sbjct: 161 APPATRGEAYGGVPLLHLHGSRDHI--VPLARMEKTLEALRPHYPEGRLARFVEEGAGHT 218
Query: 879 ARESIMHVLWETDRWLQKY 897
+ +L+ +
Sbjct: 219 LTPL---MARVGLAFLEHW 234
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* Length = 251 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 4e-12
Identities = 48/283 (16%), Positives = 84/283 (29%), Gaps = 68/283 (24%)
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWS--YPGEFKSKDAAGQVRGSPNEFPRIG 701
Y DG++L+A L +P P + G + +
Sbjct: 5 YIDCDGIKLNAYLDMPKN----NPEKCPLCIIIHGFTG---HSEERH--------IVAVQ 49
Query: 702 STSVLLWLA-RGFAIL-------GGPTTPIIGEGD-EEANDRFVEQLVACAEAAVEEVVR 752
L G A L G +G E+ + + + A V+ +
Sbjct: 50 E-----TLNEIGVATLRADMYGHGK------SDGKFEDHT---LFKWLTNILAVVDYAKK 95
Query: 753 RGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-----RTLTPFGFQNED 807
+ I + GHS G A + I S A RT G + +
Sbjct: 96 LD--FVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDP 153
Query: 808 RTLWEATSTYV-------------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854
+ + + + +K KP+L+VHG++D S F
Sbjct: 154 ENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEA--VPYEASVAF 211
Query: 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
K C+LV +P ++H Y + V ++ +
Sbjct: 212 SKQYKN----CKLVTIPGDTHCYDHHLEL--VTEAVKEFMLEQ 248
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} Length = 405 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 3e-11
Identities = 43/252 (17%), Positives = 77/252 (30%), Gaps = 54/252 (21%)
Query: 664 PSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723
P + LP K++D V G ++ L+ G++ +
Sbjct: 141 PFEGELLPGYAIISED--KAQDTLIVVGG-------GDTSREDLFYMLGYSGWEHDYNVL 191
Query: 724 I----GEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779
+ G+G N A AA+ ++ A KIA+ G S G + TA +
Sbjct: 192 MVDLPGQGK---NPNQGLHFEVDARAAISAILDWYQAPTEKIAIAGFSGGGYFTAQAVEK 248
Query: 780 APHLFCCGIARSGAYN-----------------------------------RTLTPFGFQ 804
+ IA + Y+ L + +Q
Sbjct: 249 DKRIKAW-IASTPIYDVAEVFRISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQ 307
Query: 805 NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864
+ + +E + + NK+ P L + G +++ L QS ++ K G
Sbjct: 308 FGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDS--ELMRQSQVLYDNFKQRGID 365
Query: 865 CRLVILPFESHG 876
L ES
Sbjct: 366 VTLRKFSSESGA 377
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 3e-11
Identities = 46/262 (17%), Positives = 74/262 (28%), Gaps = 45/262 (17%)
Query: 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL 707
DG+ + + +P G GP P + E + E ++ + L
Sbjct: 135 DGIPMPVYVRIPEG-----PGPHPAVIMLGGLE-----------STKEESFQMEN----L 174
Query: 708 WLARGFAILG--GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGG 765
L RG A GP G+G+ R A V+ + + I V G
Sbjct: 175 VLDRGMATATFDGP-----GQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLG 229
Query: 766 HSYGAFMTANLLAHAPHLFCCGIARSGAYN----RTLTPFGFQNEDRTLWEATSTYV--- 818
S G A P L C I+ G + TP ++ T
Sbjct: 230 RSLGGNYALKSAACEPRLAAC-ISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLH 288
Query: 819 ---EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875
+ +++ P ++HG D + D + LV+ H
Sbjct: 289 VHAALETRDVLSQIACPTYILHGVHDEVPLS---FVDTVLELVPAEHL--NLVVEKDGDH 343
Query: 876 GYAARESIMHVLWETDRWLQKY 897
+ E WL
Sbjct: 344 CCHNLGIRPRL--EMADWLYDV 363
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 2e-10
Identities = 37/244 (15%), Positives = 69/244 (28%), Gaps = 33/244 (13%)
Query: 656 LYLPPG--YDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713
+LPPG + G + P + G + L GF
Sbjct: 129 HFLPPGVWRQSVRAGRVRA-TLFLPPGPGPFPGIIDIFGIG---GGLLEYRASLLAGHGF 184
Query: 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMT 773
A L E + + E AV +++ I + G S GA +
Sbjct: 185 ATLA--LAYYNFEDLP---NNMDNISLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADIC 239
Query: 774 ANLLAHAPHLFCCGIARSGA--------------------YNRTLTPFGFQNEDRTLWEA 813
++ + ++ R F + + A
Sbjct: 240 LSMASFLKNVSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNA 299
Query: 814 TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPF 872
+ + K + PILL+ G++D+N + + L+ HG +++ P
Sbjct: 300 LVGGYKNPSMIPIEKAQGPILLIVGQDDHNWRSELY-AQTVSERLQAHGKEKPQIICYPG 358
Query: 873 ESHG 876
H
Sbjct: 359 TGHY 362
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} Length = 391 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 3e-10
Identities = 36/298 (12%), Positives = 71/298 (23%), Gaps = 45/298 (15%)
Query: 632 PQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR 691
+ E ++ + + P G +P + + G+
Sbjct: 80 EKKEGYILEKWEFYPFPKSVSTFLVLKPEH----LKGAVPGVLCIPGSGRTKEGLVGEPG 135
Query: 692 GSPNEFPRIGSTSV---LLWLARGFAIL-----------GGPTTPIIGEGDEEANDRFVE 737
+ V L + G+ + D + RF+
Sbjct: 136 ICDKLTEDYNNPKVSMALNMVKEGYVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLL 195
Query: 738 QL--------VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH-------APH 782
+L + + + +I + G S G L +
Sbjct: 196 ELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVLGVLDKDIYAFVYN 255
Query: 783 LFCCGIARSGAYNRTLTP---FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGE 839
F C F N R L Y P + A+ +PI+ G
Sbjct: 256 DFLCQTQERAVVMTKPDKENRRPFPNSIRHLIPGYWRYFNF-PDVVASLAPRPIIFTEGG 314
Query: 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVL--WETDRWLQ 895
D + A G P + A R+ + H+ ++ + +
Sbjct: 315 LD----RDFRLVQSAYAAS-GKPENAEFHHYP-KFADKAVRKDVEHLDEGLDSKTYFE 366
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 6e-10
Identities = 83/601 (13%), Positives = 154/601 (25%), Gaps = 190/601 (31%)
Query: 78 SSSNAVATEDEDNLEGRYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEEL 137
V E+ L Y+ I+ P + + QRD+ L+ + +
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR-LYNDNQVFAKY-NV 131
Query: 138 ARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG-----------QEIEIQ-GF 185
+R + L LR + + I G LG ++Q
Sbjct: 132 SRLQPYLK-LR-----QALLELRPAKNVLID-----GVLGSGKTWVALDVCLSYKVQCKM 180
Query: 186 PDGAKLNFVTW---SQDGKH-------LAFSIRID----AEDSSSSKLRVWVADVDTGKA 231
+ W +ID + SS +++ + +
Sbjct: 181 DFK-----IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 232 RPLFQSPDIYLNA--IFDNFVWVNNSTL----LVCTIPLL-------------------R 266
R L +S Y N + N V N L C I LL
Sbjct: 236 R-LLKSKP-YENCLLVLLN-VQ-NAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHIS 290
Query: 267 GDPPKKPLVP----------LGPKMQS--NEKRDI--IQVRTFQDLLKDEYDEDLFDYY- 311
D L P L + Q E ++ + ++D +D +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD--GLATWDNWK 348
Query: 312 -----ATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPY-SFIVPCGRFP 365
T ++ SL+ L+P+ K + V FP
Sbjct: 349 HVNCDKLTTIIESSLN-------------VLEPAEYRKM---------FDRLSV----FP 382
Query: 366 RQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425
+ D+ ++ + + + + + + K ST+
Sbjct: 383 P--SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VE-KQPKESTIS---------- 427
Query: 426 KVEVTPRDIIYT-QQAEPVQGEGPEILHK--LDLRYGGI-SWCDDSLALVYES--WY--- 476
I + V+ E LH+ +D Y ++ D L Y +Y
Sbjct: 428 ---------IPSIYLELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 477 -----KTRRTRTWVISPGSKDVAPRILFD--------RSSEDVYSDPGSPMMRRTSTGTY 523
+ + D R ++ GS + Y
Sbjct: 478 GHHLKNIEHPERM-------TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 524 --VIAKIKKENDEGTYILLNGNGATPEGNI---PFLDLFDINTGSKERIWESDKEKYYET 578
I + + +L+ E N+ + DL I ++ E +E
Sbjct: 531 KPYICDNDPKYERLVNAILD-FLPKIEENLICSKYTDLLRI-------ALMAEDEAIFEE 582
Query: 579 T 579
Sbjct: 583 A 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 1e-04
Identities = 59/542 (10%), Positives = 132/542 (24%), Gaps = 162/542 (29%)
Query: 424 DAK-VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWC-------------DDSLA 469
D K V+ P+ I+ ++ + + + + W ++ L
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSG---TLR--LFWTLLSKQEEMVQKFVEEVLR 88
Query: 470 LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529
+ Y+ + + +T P ++ + +Y+D + + K++
Sbjct: 89 INYK-FLMSP-IKTEQRQPS----MMTRMYIEQRDRLYNDN-QVFAKYNVSRLQPYLKLR 141
Query: 530 K---ENDEGTYILLNGNGATPEG----------NIPFLDLFD-----INTGSKERIWESD 571
+ E +L++G + G + D +N
Sbjct: 142 QALLELRPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIFWLNLK--------- 190
Query: 572 KEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPY 631
+ ++ L TS+ + N + I S + + PY
Sbjct: 191 ---NCNSPETVLEMLQ--KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS--KPY 243
Query: 632 PQLASL-------QKELIKY----------QRKDGV--QLSATLYLPPGYDPSKDGPLPC 672
L + R V LSA D
Sbjct: 244 EN--CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---- 297
Query: 673 LFWSYPGEFKSKDAAGQVRG-SPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA 731
+ K + P + PR T+ L+ II E +
Sbjct: 298 -L----TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS------------IIAESIRDG 340
Query: 732 NDRFVEQLVACAEAAVEEVVRRGVAH--PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789
+ + + ++ + P++ + +
Sbjct: 341 LATW-DNWKHVNCDKLTTIIESSLNVLEPAEYR---KMFDRL---------------SVF 381
Query: 790 RSGAY--NRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTL 847
A+ L+ +W M + NKL K L+ E+ T+
Sbjct: 382 PPSAHIPTILLS---------LIWFDVIKSDVM---VVVNKLHKYSLV---EKQPKESTI 426
Query: 848 TMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH-VLWETDRWLQKYCVSNTADRS 906
++ + E E +H + + + + +
Sbjct: 427 SI-----------PS-------IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 907 TD 908
D
Sbjct: 469 LD 470
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A Length = 303 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 9e-10
Identities = 39/258 (15%), Positives = 71/258 (27%), Gaps = 49/258 (18%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF-- 713
++ P + + G + + I + RG+
Sbjct: 72 VFYSEK----TTNQAPLFVFVHGGYW--------QEMDMSMSCSIVGP----LVRRGYRV 115
Query: 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVA-HPSKIAVGGHSYGAFM 772
A++ P + +EQL+ + + S + GH GA +
Sbjct: 116 AVMDYNLCP-------QVT---LEQLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHL 165
Query: 773 TANLLAHA-------PHLFCCGIARSGAYN-RTLTPFGFQNEDRTLWEATSTYVEMSPFM 824
A +L + I G Y+ R L+ N L +SP +
Sbjct: 166 LAQILMRPNVITAQRSKMVWALIFLCGVYDLRELSNLESVNPKNILGLNERNIESVSPML 225
Query: 825 SANKLKK-----PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA 879
I +V E D S T QS + + L+ G + H
Sbjct: 226 WEYTDVTVWNSTKIYVVAAEHD--STTFIEQSRHYADVLRKKGYKASFTLFKGYDHF--- 280
Query: 880 RESIMHVLWETDRWLQKY 897
I+ D + ++
Sbjct: 281 --DIIEETAIDDSDVSRF 296
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} Length = 398 | Back alignment and structure |
|---|
Score = 60.2 bits (145), Expect = 1e-09
Identities = 35/290 (12%), Positives = 72/290 (24%), Gaps = 47/290 (16%)
Query: 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPC--LFWSYPGEFKSKDAAGQVRGSPNEF 697
E ++ + + +P + P+P G + + N+
Sbjct: 93 EKWEFYPLPKCVSTFLVLIPDN----INKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDR 148
Query: 698 PRIGSTSVLLWLA-RGFAIL-----------GGPTTPIIGEGDEEANDRFVEQL------ 739
+ + L G+ + + D + R++ +L
Sbjct: 149 YKDPKLTQALNFVKEGYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLG 208
Query: 740 --VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC----CGIARSGA 793
+ + + +I V G S G L ++ + ++
Sbjct: 209 YASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVLGTLDTSIYAFVYNDFLCQTQE 268
Query: 794 YNRTLTP------FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTL 847
+T F N R L P + A +PI+L G D
Sbjct: 269 RAEVMTMPDKNGRRPFPNSIRHLIPDFWKNFNF-PDIVAALAPRPIILTEGGLD------ 321
Query: 848 TMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
D A G + I ++ + L L +
Sbjct: 322 -RDLDLVRKAYAIVGTPDNVKIYHYKKFSDPDTRKNVEYL---PEGLDRN 367
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 1e-09
Identities = 31/226 (13%), Positives = 62/226 (27%), Gaps = 44/226 (19%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
L+LP G P+ + + G + + + + L++G+A+
Sbjct: 55 LFLPEG------TPVGLFVFVHGG--------YWMAFDKSSWSHLAVG----ALSKGWAV 96
Query: 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775
+ + ++ AV + I + GHS G + A
Sbjct: 97 AMPSYEL--------CPEVRISEITQQISQAVTAAAKE---IDGPIVLAGHSAGGHLVAR 145
Query: 776 LLAHAPHLFCCG------IARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL 829
+L G + S + L P + + + SP N+
Sbjct: 146 MLDPEVLPEAVGARIRNVVPISPLSD--LRPLLRTSMNEKFKMDADAAIAESPVEMQNRY 203
Query: 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875
+ + G + Q+ A VI + H
Sbjct: 204 DAKVTVWVGGAE--RPAFLDQAIWLVEAWD-----ADHVIAFEKHH 242
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 5e-09
Identities = 34/243 (13%), Positives = 73/243 (30%), Gaps = 33/243 (13%)
Query: 657 YLPPG--YDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714
+LPPG +P + G P E + G+ + L +GFA
Sbjct: 146 FLPPGVRREPVRVG-RVRGTLFLPPEPGPFPGIVDMFGTG---GGLLEYRASLLAGKGFA 201
Query: 715 ILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA 774
++ + + +E E A+ ++ + + G S G +
Sbjct: 202 VMA-LAYYNYEDLPKTMETLHLEYF----EEAMNYLLSHPEVKGPGVGLLGISKGGELCL 256
Query: 775 NLLAHAPHLFCCGIARSGAYN---------RTLTPFGFQNED-----------RTLWEAT 814
++ + + + N TL P G + +
Sbjct: 257 SMASFLKGITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSP 316
Query: 815 STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPFE 873
+ F+ + + L + G++D+N + + L+ HG +++ P
Sbjct: 317 LEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEFYA-NEACKRLQAHGRRKPQIICYPET 375
Query: 874 SHG 876
H
Sbjct: 376 GHY 378
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 8e-08
Identities = 26/241 (10%), Positives = 51/241 (21%), Gaps = 39/241 (16%)
Query: 627 FPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYD----PSKDGPLPCLFWSYPGEFK 682
Q + A P + G + + K
Sbjct: 139 HLKSDNLAIQAQVLANSAYLE------AAKKSKYIIKQLEIPFEKGKITAHLHLTNTD-K 191
Query: 683 SKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL--GGPTTPIIGEGDEEANDRFVEQLV 740
G + + A+L P G + E
Sbjct: 192 PHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMP-----SVG-YSSKYPLTEDYS 245
Query: 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT- 799
+A + E+ ++ + G +G L + +
Sbjct: 246 RLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFAS 305
Query: 800 -------PFGFQNEDRTLWEATSTYVEM------------SPFMSANKLKKPILLVHGEE 840
P + + + + + F+S+ K K PIL + E
Sbjct: 306 PQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEG 365
Query: 841 D 841
D
Sbjct: 366 D 366
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 Length = 273 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 1e-07
Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 35/163 (21%)
Query: 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH-----------------APHLFC 785
A + + +V+ + I + GHS GA +LA +
Sbjct: 100 AVSNITRLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVK 157
Query: 786 CGIARSGAYNRTLTPFGFQN----------EDRTLWEATSTYVEMSPFMSANKLKKPILL 835
G Y+ + + ++E + V + ++ + L
Sbjct: 158 RVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHL 217
Query: 836 VHGEEDNNSGTL--TMQSDRFFNALKGHGALCRLVILPFESHG 876
VH D L Q++ + L+ + +L + H
Sbjct: 218 VHSYSD----ELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHN 256
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} Length = 276 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 35/272 (12%), Positives = 69/272 (25%), Gaps = 46/272 (16%)
Query: 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR 699
+ D + Y +++ P + PG G S E
Sbjct: 15 NKSTFSLNDTAWV--DFYQLQNPRQNENYTFPAIII-CPG-------GGYQHISQRES-- 62
Query: 700 IGSTSVLLWLA-RGFAI------LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVR 752
+ L +G+ + + + + L ++
Sbjct: 63 ---DPLALAFLAQGYQVLLLNYTVMN---------KGTNYNFLSQNLEEVQAVF--SLIH 108
Query: 753 RGVA----HPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDR 808
+ +P ++ + G S G + A G+ Y T FG+ ++
Sbjct: 109 QNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVI--LCYPVTSFTFGWPSDLS 166
Query: 809 TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868
E + P + H +D G S ++ + L H
Sbjct: 167 HFNFEIENISEYNISEKVTSSTPPTFIWHTADDE--GVPIYNSLKYCDRLSKHQVPFEAH 224
Query: 869 ILPFESHGYAAR-----ESIMHVLWETDRWLQ 895
HG + S + L RW+
Sbjct: 225 FFESGPHGVSLANRTTAPSDAYCLPSVHRWVS 256
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* Length = 268 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 40/268 (14%), Positives = 74/268 (27%), Gaps = 63/268 (23%)
Query: 653 SATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG 712
A +YLPPGY K L+ G GS N++ G +
Sbjct: 47 PARVYLPPGYSKDK--KYSVLYLL----------HGI-GGSENDWFEGGG---RANVIAD 90
Query: 713 FAILGGPTTPII---------GEGDEEANDRFVEQLVACAEAAVEEVVR------RGVAH 757
I G P+I G G + + F + L+ ++
Sbjct: 91 NLIAEGKIKPLIIVTPNTNAAGPGIADGYENFTKDLL-------NSLIPYIESNYSVYTD 143
Query: 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTY 817
A+ G S G + N+ F S A N F + +
Sbjct: 144 REHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPNTYPNERLFPDGGK--------- 194
Query: 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877
+A + K + + G D+ L R + ++ H +
Sbjct: 195 -------AAREKLKLLFIACGTNDS----LIGFGQRVHEYCVANNINHVYWLIQGGGHDF 243
Query: 878 AA-RESIMHVLWETDRWLQKYCVSNTAD 904
+ + + L + + ++ +
Sbjct: 244 NVWKPGLWNFL----QMADEAGLTRDGN 267
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* Length = 277 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 35/269 (13%), Positives = 61/269 (22%), Gaps = 53/269 (19%)
Query: 647 KDGVQLSATLYLPPGY-DPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV 705
T Y D P + PG G S E +
Sbjct: 11 TAAHPFQITAYWLDQISDFETAVDYPIMII-CPG-------GGFTYHSGREE-----API 57
Query: 706 LLWLA-RGFA-------ILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAH 757
+ G ++ G + + L A ++ + + AH
Sbjct: 58 ATRMMAAGMHTVVLNYQLIVGDQS------------VYPWALQQLG-ATIDWITTQASAH 104
Query: 758 ---PSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNR-----------TLTPFG 802
+I + G S G + A A + LT G
Sbjct: 105 HVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLTA-G 163
Query: 803 FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
F + T+ + KP + D + S ++ A+ H
Sbjct: 164 FPTTSAARNQITTDARLWAAQRLVTPASKPAFVWQTATD--ESVPPINSLKYVQAMLQHQ 221
Query: 863 ALCRLVILPFESHGYAARESIMHVLWETD 891
+ HG A + +
Sbjct: 222 VATAYHLFGSGIHGLALANHVTQKPGKDK 250
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} Length = 283 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 39/268 (14%), Positives = 70/268 (26%), Gaps = 39/268 (14%)
Query: 629 HPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAG 688
H + + Q + Q+ T YL + LP + PG
Sbjct: 9 HHHHENLYFQGMQVIKQKLTATCAQLTGYLHQPDTNAHQTNLPAIII-VPG-------GS 60
Query: 689 QVRGSPNEFPRIGSTSVLLWLA-RGFA--ILGGPTTPIIGEGDEEANDRFVEQLVACAEA 745
+ + + A G+ L + + ++
Sbjct: 61 YTHIPVAQAESLA-----MAFAGHGYQAFYLEYTLLT-------DQQPLGLAPVLDLG-R 107
Query: 746 AVEEVVRRGVAH---PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR------ 796
AV + + P +I G S G + A + + + A +
Sbjct: 108 AVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVVL 167
Query: 797 ----TLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSD 852
GF +D TL T T E++ N +P + +D +
Sbjct: 168 GYPVISPLLGFPKDDATLATWTPTPNELAADQHVNSDNQPTFIWTTADD--PIVPATNTL 225
Query: 853 RFFNALKGHGALCRLVILPFESHGYAAR 880
+ AL L + HG A
Sbjct: 226 AYATALATAKIPYELHVFKHGPHGLALA 253
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* Length = 403 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 32/249 (12%), Positives = 55/249 (22%), Gaps = 48/249 (19%)
Query: 655 TLYLPPGYDPSK-------DGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL 707
++ + DG S Q+
Sbjct: 185 WIFTTGDVTAEERPLAVLLDGEFWAQSMPVWPVLTSLTHRQQLPP--------------- 229
Query: 708 WLARGFAILGGPTTPIIGEGDEE--ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGG 765
A+ E N F + V+ + + V G
Sbjct: 230 ------AVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVIAPF-SDRADRTVVAG 282
Query: 766 HSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMS 825
S+G H P F C +++SG+Y G Q E +E
Sbjct: 283 QSFGGLSALYAGLHWPERFGCVLSQSGSYWW--PHRGGQQEG--------VLLEKLKAGE 332
Query: 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH 885
+ I+L G + + + + L + R +M
Sbjct: 333 VSAEGLRIVLEAGIREPM---IMRANQALYAQLHPIKESIFWRQVDGGHDALCWRGGLMQ 389
Query: 886 VLWETDRWL 894
L L
Sbjct: 390 GL----IDL 394
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* Length = 297 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 2e-06
Identities = 45/289 (15%), Positives = 75/289 (25%), Gaps = 52/289 (17%)
Query: 623 QITDFPHPYPQLASLQKELIKYQ-RKDGVQLSATLYLPPGYDPSKDGPLPCLFW--SYPG 679
Q P Y ++K S +YLP GYDP+K +
Sbjct: 23 QYRPAPDSYLNPCPQAGRIVKETYTGINGTKSLNVYLPYGYDPNK--KYNIFYLMHGGGE 80
Query: 680 EFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII-----GEGDEEANDR 734
+ F +L AI+ G P+I G
Sbjct: 81 NENTI------------FSNDVKLQNIL----DHAIMNGELEPLIVVTPTFNGGNCTAQN 124
Query: 735 F----VEQLVACAEA-----AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC 785
F + ++ E+ A + A GG + G T ++ +
Sbjct: 125 FYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVA 184
Query: 786 CGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG 845
+ SG Y +P N + +K + + G ED
Sbjct: 185 YFMPLSGDYWYGNSPQDKANSIAEAINRS----------GLSKREYFVFAATGSEDIAYA 234
Query: 846 TLTMQSD------RFFNALKGHGALCRLVILPFESHGYAA-RESIMHVL 887
+ Q + F ++ P +H + R I L
Sbjct: 235 NMNPQIEAMKALPHFDYTSDFSKGNFYFLVAPGATHWWGYVRHYIYDAL 283
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 Length = 223 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 22/150 (14%), Positives = 37/150 (24%), Gaps = 29/150 (19%)
Query: 722 PIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP 781
I E + A A E +R + G+S GA + ++L+ P
Sbjct: 76 ERIDPTRFEQKS--ILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHP 133
Query: 782 HLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEED 841
+ + + + L++ G D
Sbjct: 134 GIVRLAALLRP------------------------MPVLDHVPATDLAGIRTLIIAGAAD 169
Query: 842 NNSGTLTMQSDRFFNALKGHGALCRLVILP 871
T L HGA I+P
Sbjct: 170 E---TYGPFVPALVTLLSRHGAEVDARIIP 196
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* Length = 278 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 7e-06
Identities = 36/289 (12%), Positives = 63/289 (21%), Gaps = 57/289 (19%)
Query: 624 ITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYP----- 678
I D + ++ + + R V +P P+ YP
Sbjct: 3 IADKGSVFYHFSATSFDSVDGTRHYRVWT----AVPNTTAPAS---------GYPILYML 49
Query: 679 -GE--FKSKDAAGQVRGSPNEFPRI-----GSTSVLLWLARGF------AILGGPTTPII 724
G D + S P I + +R +
Sbjct: 50 DGNAVMDRLDDELLKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGR 109
Query: 725 GEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784
++ F + L VE+ + + + GHSYG + F
Sbjct: 110 FSRKSGGSNNFRQLLETRIAPKVEQGLN---IDRQRRGLWGHSYGGLFVLDSWLS-SSYF 165
Query: 785 CCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNS 844
+ S + + ++ K + ++ G
Sbjct: 166 RSYYSASPSL---------------GRGYDALLSRVTAVEPLQFCTKHLAIMEGSATQGD 210
Query: 845 GTLTMQSD------RFFNALKGHGALCRLVILPFESHGYAARESIMHVL 887
T LK G P HG S L
Sbjct: 211 NRETHAVGVLSKIHTTLTILKDKGVNAVFWDFPNLGHGPMFNASFRQAL 259
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 32/215 (14%), Positives = 61/215 (28%), Gaps = 52/215 (24%)
Query: 196 WSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS 255
S DGK +AF + +WVAD++T ++ + ++ +I + W +S
Sbjct: 66 ISPDGKKIAFM----RANEEKKVSEIWVADLETLSSKKILEAKNI------RSLEWNEDS 115
Query: 256 TLLVCTIPLLRGDPP-----KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDY 310
L+ R D P EK T + + +E+++ F
Sbjct: 116 RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSS 175
Query: 311 YA-------------------TTQLVLVSLDGTVKE-----IGPPAVYTSLDPSPDEKYI 346
+ + +E + AV D + I
Sbjct: 176 GIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEKVSFYAV------DSDGERI 229
Query: 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL 381
L+ ++ DG V +
Sbjct: 230 LLYGKPEKK-------YMSEHNKLYIYDGKEVMGI 257
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 8e-04
Identities = 31/297 (10%), Positives = 73/297 (24%), Gaps = 72/297 (24%)
Query: 83 VATEDEDNLEGRYRLPPP--EIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARP 140
+ +E + + ++I++A + +L ++ K+L + + + +
Sbjct: 76 MRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFED 135
Query: 141 EEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDG 200
+ D + + + E+ + + + W +D
Sbjct: 136 DVPA---WFDDLGFFDGEKT-----TFWIFDTESE-----EVIEEFEKPRFSSGIWHRDK 182
Query: 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQ-------SPD---IYLNAIFDNFV 250
+ R + + GK +F+ D I L +
Sbjct: 183 IVVNVPHREIIPQYF---KFWDIYIWEDGKEEKMFEKVSFYAVDSDGERILLYGKPEKKY 239
Query: 251 WVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFD- 309
++ L + E + DE D +
Sbjct: 240 MSEHNKLYI---------------------YDGKEVM----------GILDEVDRGVGQA 268
Query: 310 -------YYATT---QLVLVSLDGTVKEI-GPPAVYTSLDPSPDEKYILISSIHRPY 355
Y+ + L DG +K I D + L + R
Sbjct: 269 KIKDGKVYFTLFEEGSVNLYIWDGEIKPIAKGRHWIMGFDVD-EIVVYLKETATRLR 324
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} Length = 367 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 51/314 (16%), Positives = 86/314 (27%), Gaps = 96/314 (30%)
Query: 630 PYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLF----WSYPGEFKSKD 685
+P A ++ + + + G+ L+A LYLP + LP + + E S
Sbjct: 59 TFPLSAKVEHRKVTFANRYGITLAADLYLPKNRGGDR---LPAIVIGGPFGAVKEQSSGL 115
Query: 686 AAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEA 745
A G L + GG + D D A
Sbjct: 116 YA-------QTMAERG-FVTLAFDPSYTGESGG-QPRNVASPDINTED---------FSA 157
Query: 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL--------FCCGIARSGAYNRT 797
AV+ + + +I V G M N +A + + S YN +
Sbjct: 158 AVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKRVKAVVTSTMYDMTRVMSKGYNDS 217
Query: 798 LTPFGFQ------NEDRTL----------------------------------------- 810
+T + R
Sbjct: 218 VTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRA 277
Query: 811 ------WEATS--TYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861
W T+ +++ M ++ +PILL+HGE S+ + A
Sbjct: 278 VNSGNAWTMTTPLSFMNMPILTYIKEISPRPILLIHGERA----HSRYFSETAYAAAAEP 333
Query: 862 GALCRLVILPFESH 875
L+I+P SH
Sbjct: 334 K---ELLIVPGASH 344
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 Length = 226 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 26/119 (21%)
Query: 723 IIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782
+ EG + D + ++E + + I G+S GA + A+LL H +
Sbjct: 85 RLAEGIFDEED--LIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYEN 142
Query: 783 LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEED 841
+ V AN K + + G D
Sbjct: 143 ALKGAVLHHP------------------------MVPRRGMQLANLAGKSVFIAAGTND 177
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* Length = 270 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 45/296 (15%), Positives = 80/296 (27%), Gaps = 63/296 (21%)
Query: 626 DFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKD 685
L I +R DG+QL T P G G F +
Sbjct: 9 HHSSGRENLYFQGMATITLER-DGLQLVGTREEPFG------EIYDMAIIF-HG-FTAN- 58
Query: 686 AAGQVRGSPNEFPRIGSTSVLL--WLA-RGFAIL-----GGPTTPIIGEGDEEANDRFVE 737
R S + L A + G G+ D + + V
Sbjct: 59 -------------RNTSLLREIANSLRDENIASVRFDFNGH------GDSDGKFENMTVL 99
Query: 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-- 795
+ A A + V H I + GH+ G + + L P L + + A
Sbjct: 100 NEIEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLK 157
Query: 796 RTLTPFGFQNEDRTLWEATSTYV---------------EMSPFMSANKLKKPILLVHGEE 840
Q ++ + + + KP+ L+HG +
Sbjct: 158 GDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTD 217
Query: 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896
D + S ++ + L ++ H ++ + + T +LQ
Sbjct: 218 D-TVVSPNA-SKKYDQIYQNS----TLHLIEGADHCFSDSYQK-NAVNLTTDFLQN 266
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A Length = 251 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 5e-05
Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 36/203 (17%)
Query: 692 GSPNEFPRIGSTSVLLWLAR-GFAILGGPTTPIIG--EGDEEANDRFVEQLVACAEAAVE 748
GSPN+ + L R G+ + P G E + + A + AAV
Sbjct: 33 GSPNDMNFMAR-----ALQRSGYGVYV-PLFSGHGTVEPLDILTKGNPDIWWAESSAAVA 86
Query: 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY--NRTLTPF----- 801
+ + +K+ V G S G L P + G+ S L P
Sbjct: 87 HMTAKY----AKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLKYA 142
Query: 802 -------GFQNEDRTLWEATSTYV-EMSPFMS-----ANKLKKPILLVHGEEDNNSGTLT 848
G +E + + + F + N +K+P + +D
Sbjct: 143 EYMNRLAGKSDESTQILAYLPGQLAAIDQFATTVAADLNLVKQPTFIGQAGQD--ELVDG 200
Query: 849 MQSDRFFNALKGHGALCRLVILP 871
+ + +AL A
Sbjct: 201 RLAYQLRDALINA-ARVDFHWYD 222
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} Length = 209 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 9e-05
Identities = 18/123 (14%), Positives = 31/123 (25%), Gaps = 27/123 (21%)
Query: 722 PIIGEGDEEANDRFVEQLVACAEA---AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA 778
+ G G + +E L + V + + K+ G+S GA + N+
Sbjct: 62 KLRGLGGFTKENFDLESLDEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFL 121
Query: 779 HAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHG 838
F IA G + K + L +
Sbjct: 122 RGKINFDKIIAFHGMQLEDFEQ------------------------TVQLDDKHVFLSYA 157
Query: 839 EED 841
D
Sbjct: 158 PND 160
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 Length = 305 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 19/158 (12%), Positives = 32/158 (20%), Gaps = 34/158 (21%)
Query: 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 802
+ +G I + S A A + L I G N T
Sbjct: 93 LCTVYHWLQTKG---TQNIGLIAASLSA-RVAYEVISDLEL-SFLITAVGVVNLRDTLEK 147
Query: 803 FQNEDRTLWEATSTYVEM-------------------------SPFMSANKLKKPILLVH 837
D ++ S P++
Sbjct: 148 ALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFT 207
Query: 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875
D+ + ++ C+L L SH
Sbjct: 208 ANNDDW--VKQEEVYDMLAHIRTGH--CKLYSLLGSSH 241
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} Length = 258 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 30/233 (12%), Positives = 53/233 (22%), Gaps = 46/233 (19%)
Query: 628 PHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAA 687
P+P +A+ + S +Y P P + W G
Sbjct: 8 GAPFPAVANFDRSGPYTVSSQSEGPSCRIYRPRDLGQG-GVRHPVILWG-NG-------- 57
Query: 688 GQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAV 747
P+ + + S W + GF + T G G E E
Sbjct: 58 --TGAGPSTYAGLLS----HWASHGFVVAA-AETSNAGTGREMLACLDYLV----RENDT 106
Query: 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED 807
G + ++ GHS G + + + G
Sbjct: 107 PYGTYSGKLNTGRVGTSGHSQGGGGSIMAGQDTR------VRTTAPIQPYTLGLGH---- 156
Query: 808 RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860
S + + P+ L+ G D + +
Sbjct: 157 --------------DSASQRRQQGPMFLMSGGGDTIAFPYLNA-QPVYRRANV 194
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} Length = 223 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 47/263 (17%), Positives = 68/263 (25%), Gaps = 74/263 (28%)
Query: 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQV-----RGSPNEFPRIGS 702
V+L L +P G A G V GS PR
Sbjct: 20 GEVKLKGNLVIPNG------------------------ATGIVLFAHGSGSSRYSPRNRY 55
Query: 703 TSVLLWLARGFAILG----GPTTPIIGEGDEEANDRF----VEQLVACAEAAVEEVVRRG 754
+ +L G A L E + + R + L + A + +
Sbjct: 56 VAEVLQ-QAGLATLLIDLLTQ-----EEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNP 109
Query: 755 VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEAT 814
K+ G S G A P ++R G L
Sbjct: 110 DTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGG---------RPDLAPSALP--- 157
Query: 815 STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874
+K P LL+ G D + AL+ RLVI+P S
Sbjct: 158 -------------HVKAPTLLIVGGYDLPVIAMNED------ALEQLQTSKRLVIIPRAS 198
Query: 875 HGYAARESIMHVLWETDRWLQKY 897
H + ++ V W Y
Sbjct: 199 HLFEEPGALTAVAQLASEWFMHY 221
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* Length = 318 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 3e-04
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 12/94 (12%)
Query: 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGI----------ARSGAYNRTLTPFGFQNED 807
P+ ++V G + G +M A L +F G AR+ Y +
Sbjct: 10 PNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITT 69
Query: 808 RTLWEATSTYVEMSPFMSANKLKKPILLVHGEED 841
T + + +++ AN ++ I + G D
Sbjct: 70 PTANMKSWSGNQIASV--ANLGQRKIYMWTGSSD 101
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} Length = 282 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 46/264 (17%), Positives = 75/264 (28%), Gaps = 39/264 (14%)
Query: 649 GVQLSATLYLPPGYDPSKDGPLPCLFW------------SYPGEFKSKDAAGQVRGSPNE 696
++ +YLPP + G P L+W S G +S G V +P+
Sbjct: 27 NCKMKFAVYLPPKAE---TGKCPALYWLSGLTCTEQNFISKSGYHQSASEHGLVVIAPDT 83
Query: 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGD-------EEANDRFVEQLVACAEAAVEE 749
PR G I G + G G E+ E +
Sbjct: 84 SPR------------GCNIKGEDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQL 131
Query: 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRT 809
+ P ++++ GHS G P + A + N L P+G +
Sbjct: 132 INANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAPICNPVLCPWGKKAFSGY 191
Query: 810 LWEATSTYVEMSPFMSANKLKK---PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR 866
L S + IL+ G++D + D F A
Sbjct: 192 LGTDQSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLLDGQLLPDNFIAACTEKKIPVV 251
Query: 867 LVILPFESHGYAARESIM--HVLW 888
+ H Y + + H+
Sbjct: 252 FRLQEDYDHSYYFIATFITDHIRH 275
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A Length = 397 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 6e-04
Identities = 24/154 (15%), Positives = 38/154 (24%), Gaps = 20/154 (12%)
Query: 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL 709
S L +P G S GP P L W +P E + V
Sbjct: 61 ATASGVLLIPGGERCS--GPYPLLGWGHPTEALRAQEQAKEIRDAKGD----DPLVTRLA 114
Query: 710 ARGFAI-------LGGPTTPIIG--EGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSK 760
++G+ + LG EA+ + AA + K
Sbjct: 115 SQGYVVVGSDYLGLGKSNYAYHPYLHSASEASAT-----IDAMRAARSVLQHLKTPLSGK 169
Query: 761 IAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794
+ + G+S G +
Sbjct: 170 VMLSGYSQGGHTAMATQREIEAHLSKEFHLVASA 203
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 Length = 615 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 8e-04
Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 25/171 (14%)
Query: 647 KDGVQLSATLYLPPGYDPSKDGPLPCLF-WS-YPGEFKSKDAAGQVRGSPNEFPRIGSTS 704
+DGV+L + LP G P + + Y + SP+ + +
Sbjct: 33 RDGVKLHTVIVLPKG-----AKNAPIVLTRTPY-----DASGRTERLASPHMKDLLSAGD 82
Query: 705 VLLWLARGFAIL----------GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG 754
+++ G+ + G + A ++ +V+
Sbjct: 83 -DVFVEGGYIRVFQDVRGKYGSEGDYVMT--RPLRGPLNPSEVDHATDAWDTIDWLVKNV 139
Query: 755 VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN 805
K+ + G SY F L + + S + + F
Sbjct: 140 SESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWMGDDWFNY 190
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} Length = 306 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 8e-04
Identities = 41/235 (17%), Positives = 61/235 (25%), Gaps = 65/235 (27%)
Query: 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL 709
T+Y P + + S + G+ S + WL
Sbjct: 81 GFGGGTIYYPRE-----NNTYGAIAIS------------------PGYT--GTQSSIAWL 115
Query: 710 ARGFAILG----GPTTPIIGEGDEEANDRFVEQLVACAE--AAVEEVVRRGVAHPSKIAV 763
A G T + D QL A + R S++AV
Sbjct: 116 GERIASHGFVVIAIDTN----TTLDQPDSRARQLNAALDYMLTDASSAVRNRIDASRLAV 171
Query: 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823
GHS G LA I LTP+
Sbjct: 172 MGHSMGGG-GTLRLASQRPDLKAAIP--------LTPWHLNK------------------ 204
Query: 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878
S + P L++ E D + T+ S F+N++ + L SH
Sbjct: 205 -SWRDITVPTLIIGAEYDTIASV-TLHSKPFYNSIPS-PTDKAYLELDGASHFAP 256
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 953 | |||
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.92 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.92 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.91 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.89 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.89 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.88 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.88 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.88 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.88 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.88 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.88 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.88 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.87 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.87 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.87 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.87 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.87 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.86 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.86 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.86 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.85 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.85 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.85 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.85 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.85 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.85 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.85 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.84 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.84 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.84 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.84 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.84 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.84 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.84 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.83 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.83 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.83 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.83 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.83 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.82 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.82 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.82 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.82 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.82 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.82 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.82 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.81 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.81 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.81 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.81 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.81 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.8 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.8 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.8 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.8 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.8 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.8 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.8 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.8 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.79 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.79 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.79 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.79 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.79 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.79 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.78 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.78 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.78 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.78 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.78 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.78 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.78 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.77 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.77 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.77 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.76 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.76 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.76 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.76 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.76 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.76 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.76 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.76 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.76 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.76 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.75 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.75 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.75 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.74 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.74 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.74 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.74 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.73 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.73 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.73 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.73 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.72 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.72 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.72 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.72 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.72 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.72 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.72 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.72 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.72 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.72 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.71 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.71 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.71 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.71 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.71 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.71 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.7 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.7 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.7 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.7 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.7 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.7 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.69 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.69 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.68 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.68 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.68 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.68 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.68 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.68 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.68 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.67 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.67 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.67 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.67 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.67 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.67 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.67 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.67 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.67 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.66 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.66 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.66 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.66 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.66 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.66 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.66 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.65 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.65 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.65 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.65 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.65 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.64 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.64 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.64 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.64 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.64 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.64 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.64 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.64 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.64 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.63 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.63 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.63 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.63 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.63 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.63 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.63 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.63 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.63 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.63 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.62 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.62 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.62 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.62 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.62 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.62 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.62 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.62 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.62 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.61 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.61 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.61 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.61 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.61 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.61 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.61 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.6 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.6 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.6 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.6 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.6 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.6 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.6 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.6 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.59 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.59 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.59 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.59 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.59 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.59 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.59 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.59 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.59 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.59 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.58 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.58 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.58 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.58 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.58 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.58 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.58 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.58 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.58 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.57 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.57 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.57 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.57 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.56 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.56 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.56 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.56 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.56 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.56 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 99.56 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.56 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.56 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.56 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.55 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.55 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.55 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.55 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.55 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.55 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.55 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.55 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.55 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.55 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.54 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.54 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.54 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.54 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.54 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.53 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.53 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.53 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.53 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.52 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.52 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.52 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.52 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.52 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.52 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.52 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.52 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.51 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.51 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.51 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.51 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.5 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.5 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.5 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.5 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.5 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.49 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.49 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.49 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.49 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.49 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.49 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.49 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.49 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.49 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.49 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.48 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.48 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.48 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.48 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.48 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.48 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.47 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.47 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.47 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.47 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.46 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.46 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.46 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.46 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.45 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.45 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.45 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.45 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.45 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.45 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.45 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.44 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.44 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.44 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.44 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.44 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.43 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.43 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.43 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.43 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.43 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.43 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.42 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.41 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.41 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.41 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.4 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.4 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.39 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.39 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.39 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.38 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.38 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.38 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.37 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.37 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.37 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.36 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.36 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.35 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.34 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.34 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.34 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.33 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.33 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 99.01 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.33 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.32 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.32 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.31 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.3 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.27 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.26 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.26 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.25 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.25 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.24 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.23 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.21 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.2 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.19 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 99.19 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.19 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 99.19 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.18 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.18 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 99.17 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.17 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.17 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 99.16 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.16 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.15 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.15 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 99.14 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.13 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.13 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.13 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.12 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 99.12 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.11 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.11 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.1 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.1 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.09 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.08 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.08 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.07 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.06 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.05 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.05 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.05 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.03 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.03 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 99.03 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.98 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.98 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.97 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 98.96 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 98.96 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.94 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 98.91 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.86 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.85 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 98.85 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 98.84 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 98.83 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 98.81 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 98.81 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 98.75 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 98.74 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.73 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.72 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.71 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 98.71 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 98.66 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.64 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.63 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.63 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.62 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 98.62 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.62 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.62 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.61 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.61 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.6 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.6 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.59 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.59 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 98.59 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.58 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.57 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.52 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.52 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.51 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.5 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.5 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.49 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.49 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.45 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 98.45 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.45 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.43 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.43 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 98.43 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.42 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 98.42 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.41 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.4 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.4 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.39 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.36 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.35 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.35 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.34 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.33 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.31 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.3 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.29 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.29 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.25 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.25 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.25 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.22 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.2 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.2 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.18 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.18 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 98.16 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.15 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.12 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.07 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.03 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.03 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.02 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.97 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.96 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.96 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.94 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.93 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.93 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.88 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 97.86 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.85 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.85 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.83 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.81 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.81 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.77 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.77 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.68 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.65 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.63 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 97.49 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 97.46 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.42 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.22 | |
| 1whs_A | 255 | Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T | 97.22 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 97.22 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.15 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.09 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.0 | |
| 4ebb_A | 472 | Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2 | 96.98 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.86 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.77 |
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-56 Score=541.89 Aligned_cols=630 Identities=14% Similarity=0.091 Sum_probs=444.2
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeee-ecCCC
Q 002209 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEI-QGFPD 187 (953)
Q Consensus 109 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l-~~~~~ 187 (953)
+....++|||||++|+.. + +.|++|++.+ ++.+.+ .....
T Consensus 17 ~~~~~~~w~~dg~~~~~~-~----------------------------------~~i~~~~~~~----~~~~~~~~~~~~ 57 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ-E----------------------------------NNILVFNAEY----GNSSVFLENSTF 57 (740)
T ss_dssp CCCCCEEECSSSEEEEEE-T----------------------------------TEEEEEETTT----CCEEEEECTTTT
T ss_pred ccccccEECCCCcEEEEc-C----------------------------------CcEEEEECCC----CceEEEEechhh
Confidence 346689999999877664 3 2789999854 343443 22111
Q ss_pred CC-cccc--eEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecC
Q 002209 188 GA-KLNF--VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (953)
Q Consensus 188 ~~-~~~~--~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 264 (953)
.. .+.. +.|||||++|+|..........+...++|++|+++|+.++|+..+.. +..++|||||+.|+|+
T Consensus 58 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~-----~~~~~~SPdG~~la~~--- 129 (740)
T 4a5s_A 58 DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNN-----TQWVTWSPVGHKLAYV--- 129 (740)
T ss_dssp TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTT-----EEEEEECSSTTCEEEE---
T ss_pred hhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCc-----ceeeEECCCCCEEEEE---
Confidence 11 2333 89999999999988643222334457899999999999888765542 6689999999999988
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCc---c------
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAV---Y------ 334 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~---~------ 334 (953)
...+||++++ +|+.++++..+. +
T Consensus 130 -----------------------------------------------~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~ 162 (740)
T 4a5s_A 130 -----------------------------------------------WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITD 162 (740)
T ss_dssp -----------------------------------------------ETTEEEEESSTTSCCEECCSCCBTTTEEESBCC
T ss_pred -----------------------------------------------ECCeEEEEECCCCceEEEcCCCCccceecCccc
Confidence 2247889998 888888875411 1
Q ss_pred -----------cccccCCCCcEEEEEEecCCcc--ccc------------------cC-C--CCCcceEEEeccC---c-
Q 002209 335 -----------TSLDPSPDEKYILISSIHRPYS--FIV------------------PC-G--RFPRQVGVWTTDG---I- 376 (953)
Q Consensus 335 -----------~~~~~SpDG~~l~~~~~~~~~~--~~~------------------~~-~--~~~~~i~~~d~~g---~- 376 (953)
..++|||||++|||.+.+...- +.. |. + .-...|++||+++ +
T Consensus 163 ~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~ 242 (740)
T 4a5s_A 163 WVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 242 (740)
T ss_dssp HHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS
T ss_pred ccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC
Confidence 2478999999999998654310 000 00 0 1112689999988 6
Q ss_pred --eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC-------
Q 002209 377 --FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG------- 447 (953)
Q Consensus 377 --~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~------- 447 (953)
..+.+..... +.+....+..++|||||+.++++..+. +....|+++|+ ++++
T Consensus 243 ~~~~~~l~~~~~-------~~~~~~~~~~~~wspdg~~~~~~~~r~---------~~~~~i~~~d~---~tg~~~~~~~~ 303 (740)
T 4a5s_A 243 NATSIQITAPAS-------MLIGDHYLCDVTWATQERISLQWLRRI---------QNYSVMDICDY---DESSGRWNCLV 303 (740)
T ss_dssp CCCEEEECCCHH-------HHTSCEEEEEEEEEETTEEEEEEEESS---------TTEEEEEEEEE---ETTTTEEEECG
T ss_pred cceEEEecCCcc-------CCCCCeEEEEEEEeCCCeEEEEEeCCC---------CCEEEEEEEEC---CCCccccceeE
Confidence 4555543100 000112345789999999777774432 22346899996 4444
Q ss_pred ceEE-ee-ccccc-----CCeeeccCCceEE-EEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEecc
Q 002209 448 PEIL-HK-LDLRY-----GGISWCDDSLALV-YESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTS 519 (953)
Q Consensus 448 ~~~l-~~-~~~~~-----~~~~~SpDg~~l~-~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Sp 519 (953)
...+ .. ....+ ..+.|||||+.|+ +.+.++ +..+||.++++++ ..+.++...... . -.+++
T Consensus 304 ~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~-G~~~l~~~~~~~~--~~~~lT~g~~~v-~-------~~~~~ 372 (740)
T 4a5s_A 304 ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEE-GYRHICYFQIDKK--DCTFITKGTWEV-I-------GIEAL 372 (740)
T ss_dssp GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTT-SCEEEEEEETTCS--SCEESCCSSSCE-E-------EEEEE
T ss_pred EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCC-CceEEEEEECCCC--ceEecccCCEEE-E-------EEEEE
Confidence 2333 22 22222 3789999999988 555444 4579999999885 567777554332 1 12446
Q ss_pred CCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceE-EEeccC-cccceeeeEeeccCCccccccccCCE
Q 002209 520 TGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE-RIWESD-KEKYYETTVALMSDQTEGDLYLNQLK 597 (953)
Q Consensus 520 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~ 597 (953)
||+.|+|...... . .....+||.+++++++.+ +|+..- +. -.....++||+|++.
T Consensus 373 d~~~i~f~~~~~~------------~--~~~~~~ly~v~~~g~~~~~~lt~~~~~~---------~~~~~~~~~S~dg~~ 429 (740)
T 4a5s_A 373 TSDYLYYISNEYK------------G--MPGGRNLYKIQLIDYTKVTCLSCELNPE---------RCQYYSVSFSKEAKY 429 (740)
T ss_dssp CSSEEEEEESCGG------------G--CTTCBEEEEEETTEEEEEEESSTTTSTT---------TBCBEEEEECTTSSE
T ss_pred eCCEEEEEEecCC------------C--CCceeEEEEEECCCCCcceeeccccCCC---------CCceEEEEECCCCCE
Confidence 7888888874300 0 012458999999887765 666431 10 001123679999999
Q ss_pred EEEEEecCCCCceEEEEECCCCCeeEEecCCCCC----CCcCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEE
Q 002209 598 ILTSKESKTENTQYYIQSWPDKKSCQITDFPHPY----PQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCL 673 (953)
Q Consensus 598 l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~~~~----~~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~v 673 (953)
+++..+++. |+.+++++..+++..++...+..+ ........+.+++ ..+|.++++++++|+++++.+ ++|+|
T Consensus 430 ~~~~~s~~~-~p~~~l~~~~~~~~~~~l~~n~~~~~~~~~~~~~~~~~~~~-~~dg~~l~~~~~~P~~~~~~~--~~P~v 505 (740)
T 4a5s_A 430 YQLRCSGPG-LPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFI-ILNETKFWYQMILPPHFDKSK--KYPLL 505 (740)
T ss_dssp EEEEECSBS-SCEEEEEETTTTEEEEEEECCHHHHHHHTTEECCEEEEEEE-EETTEEEEEEEEECTTCCTTS--CEEEE
T ss_pred EEEEeCCCC-CCEEEEEECCCCcEEEEeccChhhhhhhhhccCCccEEEEE-ccCCeEEEEEEEeCCCCCCCC--CccEE
Confidence 999999887 888999998888776766554322 2233344677777 779999999999999876554 59999
Q ss_pred EEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCcEEEEcCCCCCCCCCChhhh---hhhHHHHHHHHHHHHHH
Q 002209 674 FWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEE 749 (953)
Q Consensus 674 v~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~~~~~ 749 (953)
|++||++.... +. ..| ...+...++ ++||+|+.+|++|..+.|..+.. ..+....++|+.+++++
T Consensus 506 v~~HGg~~~~~-----~~---~~~---~~~~~~~l~~~~G~~Vv~~D~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~i~~ 574 (740)
T 4a5s_A 506 LDVYAGPCSQK-----AD---TVF---RLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQ 574 (740)
T ss_dssp EECCCCTTCCC-----CC---CCC---CCSHHHHHHHTTCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHH
T ss_pred EEECCCCcccc-----cc---ccc---CcCHHHHHHhcCCeEEEEEcCCCCCcCChhHHHHHHhhhCcccHHHHHHHHHH
Confidence 99999864321 00 112 222344566 49999999888776666654332 23345678999999999
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccc-cch--hhhhHHHHHhcCccccc
Q 002209 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE-DRT--LWEATSTYVEMSPFMSA 826 (953)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~-~~~--~~~~~~~~~~~sp~~~~ 826 (953)
|.+++.+|++||+|+||||||++|+.++.++|++|+++|+.+|+.++......+... .+. .+++.+.|...+|+..+
T Consensus 575 l~~~~~~d~~ri~i~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 654 (740)
T 4a5s_A 575 FSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRA 654 (740)
T ss_dssp HHTSTTEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBHHHHHHHHCCSSTTTTHHHHHHSCSGGGG
T ss_pred HHhcCCcCCccEEEEEECHHHHHHHHHHHhCCCceeEEEEcCCccchHHhhhHHHHHHcCCCCccccHHHHHhCCHHHHH
Confidence 998888999999999999999999999999999999999999998865432211110 111 25667788899999999
Q ss_pred CCCCC-cEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccCCC
Q 002209 827 NKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 827 ~~i~~-P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (953)
.+++. |+||+||+.|.+|| +.++.+++++|+..++++++++||+++|.+...+....+++.+.+||+++++...
T Consensus 655 ~~i~~~P~Lii~G~~D~~v~--~~~~~~l~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 729 (740)
T 4a5s_A 655 ENFKQVEYLLIHGTADDNVH--FQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFSLPA 729 (740)
T ss_dssp GGGGGSEEEEEEETTCSSSC--THHHHHHHHHHHHTTCCCEEEEETTCCTTCCSHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred hcCCCCcEEEEEcCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCcCCCCccHHHHHHHHHHHHHHHcCCCC
Confidence 99987 99999999999999 9999999999999999999999999999986667778899999999999997543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-54 Score=527.14 Aligned_cols=628 Identities=17% Similarity=0.213 Sum_probs=442.9
Q ss_pred chhHHHhhc-----CCCCCCceecCCCCEEEEEec-CCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccC
Q 002209 99 PPEIREIVD-----APPLPALSFSPQRDKILFLKR-RALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP 172 (953)
Q Consensus 99 ~~~~~~~~~-----~~~~~~~~~SPDG~~la~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 172 (953)
+..+++++. ...+..++|||||++|+|.+. + +.... ..||+||+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~d-----------------------~~~~~-----~~i~~~d~~~ 73 (741)
T 2ecf_A 22 KLTLEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKD-----------------------SDRNQ-----LDLWSYDIGS 73 (741)
T ss_dssp CCCHHHHTSSSCTTCCCCEEEEECTTSSEEEEEECCS-----------------------SCTTE-----EEEEEEETTT
T ss_pred cccHHHHhccCCcCCCCCCCceEecCCCEEEEEeccC-----------------------CCCcc-----cEEEEEECCC
Confidence 345566663 345778999999999999987 3 11111 3789999854
Q ss_pred CCCCCceeeeecCCCC-----------------------CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCC
Q 002209 173 DGKLGQEIEIQGFPDG-----------------------AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG 229 (953)
Q Consensus 173 ~g~~~~~~~l~~~~~~-----------------------~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g 229 (953)
++.+++...... ..+..++|||||++|+|.. ...||++|++++
T Consensus 74 ----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~----------~~~i~~~d~~~~ 139 (741)
T 2ecf_A 74 ----GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPL----------GGELYLYDLKQE 139 (741)
T ss_dssp ----CCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEE----------TTEEEEEESSSC
T ss_pred ----CceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEe----------CCcEEEEECCCC
Confidence 444444322111 1268899999999999976 269999999998
Q ss_pred ---ceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhh
Q 002209 230 ---KARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDED 306 (953)
Q Consensus 230 ---~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 306 (953)
+.++++..... +..++|||||++|+|.
T Consensus 140 ~~~~~~~l~~~~~~-----~~~~~~SPDG~~la~~--------------------------------------------- 169 (741)
T 2ecf_A 140 GKAAVRQLTHGEGF-----ATDAKLSPKGGFVSFI--------------------------------------------- 169 (741)
T ss_dssp STTSCCBCCCSSSC-----EEEEEECTTSSEEEEE---------------------------------------------
T ss_pred CcceEEEcccCCcc-----cccccCCCCCCEEEEE---------------------------------------------
Confidence 77777765432 6689999999999987
Q ss_pred hhhhhccceEEEEEc-CCceeEeCCC-Cc-----------------ccccccCCCCcEEEEEEecCCccc----------
Q 002209 307 LFDYYATTQLVLVSL-DGTVKEIGPP-AV-----------------YTSLDPSPDEKYILISSIHRPYSF---------- 357 (953)
Q Consensus 307 ~~~~~~~~~l~~~~~-~g~~~~l~~~-~~-----------------~~~~~~SpDG~~l~~~~~~~~~~~---------- 357 (953)
...+|+++++ +|+.++++.. .. +..++|||||++|+|.+.+.....
T Consensus 170 -----~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~ 244 (741)
T 2ecf_A 170 -----RGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYAD 244 (741)
T ss_dssp -----ETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSS
T ss_pred -----eCCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCC
Confidence 2237899999 8888877754 21 478999999999999986542100
Q ss_pred -------cccC---CCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002209 358 -------IVPC---GRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (953)
Q Consensus 358 -------~~~~---~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (953)
..+. ......|++||+++ ++.+.+..... ....+..++| |||+.|++......
T Consensus 245 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~~-pDg~~l~~~~~~~~----- 308 (741)
T 2ecf_A 245 RTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKE----------QDIYLARVNW-RDPQHLSFQRQSRD----- 308 (741)
T ss_dssp CEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSC----------SSEEEEEEEE-EETTEEEEEEEETT-----
T ss_pred cccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCC----------cceEEEEEEe-CCCCEEEEEEeccc-----
Confidence 0000 00112788999988 77666543210 1123457899 99999988733211
Q ss_pred cccccCCeEEEEecCCCCCCCceEEeeccc-----ccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecC
Q 002209 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDL-----RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (953)
Q Consensus 427 ~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~-----~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 501 (953)
.....|+++|+ .+++.+.+..... .+..++|||||+ +++.+..++ ..+||.++.+++ ...++..
T Consensus 309 ---~~~~~i~~~d~---~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g-~~~l~~~~~~~~---~~~l~~~ 377 (741)
T 2ecf_A 309 ---QKKLDLVEVTL---ASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTG-FQHLYRIDSKGK---AAALTHG 377 (741)
T ss_dssp ---SSEEEEEEEET---TTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTS-SCEEEEECSSSC---EEESCCS
T ss_pred ---CCeEEEEEEEC---CCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCC-ccEEEEEcCCCC---eeeeeec
Confidence 22457999996 5566555543322 335799999999 555555443 358999997662 3444433
Q ss_pred CCccccCCCCCCCe-EeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeE
Q 002209 502 SSEDVYSDPGSPMM-RRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTV 580 (953)
Q Consensus 502 ~~~~~~~~~~~p~~-~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~ 580 (953)
... +.. + .|||||++|++...... ....+||.++++++..++|+...+.
T Consensus 378 ~~~-v~~------~~~~s~dg~~l~~~~~~~~----------------~~~~~l~~~~~~g~~~~~l~~~~~~------- 427 (741)
T 2ecf_A 378 NWS-VDE------LLAVDEKAGLAYFRAGIES----------------ARESQIYAVPLQGGQPQRLSKAPGM------- 427 (741)
T ss_dssp SSC-EEE------EEEEETTTTEEEEEECSSC----------------TTCBEEEEEETTCCCCEECCCSCSE-------
T ss_pred ceE-EEe------EeEEeCCCCEEEEEEeCCC----------------CceEEEEEEEcCCCCeeecccCCCc-------
Confidence 221 111 3 59999999988873210 0133577777777767777763221
Q ss_pred eeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEecCCC-----CCCCc--CCCceEEEEEEcCCC-cEE
Q 002209 581 ALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPH-----PYPQL--ASLQKELIKYQRKDG-VQL 652 (953)
Q Consensus 581 ~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~~-----~~~~~--~~~~~~~~~~~~~dg-~~~ 652 (953)
...+|||||+.+++..++...|+++|+++..++..+.|+..+. .+... .....+.+++++.+| ..+
T Consensus 428 ------~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l 501 (741)
T 2ecf_A 428 ------HSASFARNASVYVDSWSNNSTPPQIELFRANGEKIATLVENDLADPKHPYARYREAQRPVEFGTLTAADGKTPL 501 (741)
T ss_dssp ------EEEEECTTSSEEEEEEEETTEEEEEEEEETTSCEEECSSCCCSSSTTSTTHHHHTTCCCEEEEEEECTTSSCEE
T ss_pred ------eEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCeEEEeccCcccccccchhhhhccCCCcEEEEEEcCCCCEEE
Confidence 1247899999999999999999999999987766666664332 22223 344688999999999 999
Q ss_pred EEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccc-hHHHHHHHcCcEEEEcCCCCCCCCCChhh
Q 002209 653 SATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS-TSVLLWLARGFAILGGPTTPIIGEGDEEA 731 (953)
Q Consensus 653 ~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~G~~V~~~~~~~~~G~G~~~~ 731 (953)
+++++.|+++++++ ++|+||++||++..... ...|..... ..+..|+++||+|+.+|+++..+.|..+.
T Consensus 502 ~~~~~~P~~~~~~~--~~p~vv~~hG~~~~~~~--------~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~s~~~~~ 571 (741)
T 2ecf_A 502 NYSVIKPAGFDPAK--RYPVAVYVYGGPASQTV--------TDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFG 571 (741)
T ss_dssp EEEEECCSSCCTTS--CEEEEEECCCSTTCCSC--------SSCCCCSHHHHHHHHHHHTTCEEEEECCTTCSSSCHHHH
T ss_pred EEEEEeCCCCCCCC--CcCEEEEEcCCCCcccc--------cccccccchhHHHHHHHhCCCEEEEEecCCCCCCChhhh
Confidence 99999998765443 48999999997533110 011211000 35677889999999977765444333221
Q ss_pred h---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCccc-cc
Q 002209 732 N---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN-ED 807 (953)
Q Consensus 732 ~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~-~~ 807 (953)
. ..+....+.|+.+++++|.+++.+|.++++|+||||||++++.++.++|++|+++|+.+|+.++......+.. ..
T Consensus 572 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~ 651 (741)
T 2ecf_A 572 GALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAPVTDWGLYDSHYTERYM 651 (741)
T ss_dssp HTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCGGGSBHHHHHHHH
T ss_pred HHHhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEEEChHHHHHHHHHHhCCCceEEEEEcCCCcchhhhccccchhhc
Confidence 1 1223456899999999999988889999999999999999999999999999999999998775432111110 11
Q ss_pred chhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHH
Q 002209 808 RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVL 887 (953)
Q Consensus 808 ~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~ 887 (953)
..++...+.|...+|+..+.++++|+|++||++|.+|| ++++.+++++++..+++++++++|+++|.+.... ...+.
T Consensus 652 ~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~-~~~~~ 728 (741)
T 2ecf_A 652 DLPARNDAGYREARVLTHIEGLRSPLLLIHGMADDNVL--FTNSTSLMSALQKRGQPFELMTYPGAKHGLSGAD-ALHRY 728 (741)
T ss_dssp CCTGGGHHHHHHHCSGGGGGGCCSCEEEEEETTCSSSC--THHHHHHHHHHHHTTCCCEEEEETTCCSSCCHHH-HHHHH
T ss_pred CCcccChhhhhhcCHHHHHhhCCCCEEEEccCCCCCCC--HHHHHHHHHHHHHCCCceEEEEECCCCCCCCCCc-hhHHH
Confidence 23455667788889999999999999999999999999 9999999999999999999999999999985333 37788
Q ss_pred HHHHHHHHHhcc
Q 002209 888 WETDRWLQKYCV 899 (953)
Q Consensus 888 ~~i~~fl~~~l~ 899 (953)
+.+.+||+++|+
T Consensus 729 ~~i~~fl~~~l~ 740 (741)
T 2ecf_A 729 RVAEAFLGRCLK 740 (741)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999999985
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-53 Score=518.76 Aligned_cols=630 Identities=12% Similarity=0.065 Sum_probs=420.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
....++|||||++++ ...+ +.|++||+.+ ++...+.......
T Consensus 18 ~~~~~~~spdg~~~~-~~~d---------------------------------g~i~~~d~~~----g~~~~~~~~~~~~ 59 (723)
T 1xfd_A 18 HDPEAKWISDTEFIY-REQK---------------------------------GTVRLWNVET----NTSTVLIEGKKIE 59 (723)
T ss_dssp CCCCCCBSSSSCBCC-CCSS---------------------------------SCEEEBCGGG----CCCEEEECTTTTT
T ss_pred cccccEEcCCCcEEE-EeCC---------------------------------CCEEEEECCC----CcEEEEecccccc
Confidence 467899999999553 3322 2679999854 3333333211111
Q ss_pred --cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 190 --KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 190 --~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
.+..++|||||++|+|..........+....||++|+++++.++++..... ...+..++|||||+.|+|.
T Consensus 60 ~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~--~~~~~~~~~SPdG~~la~~------ 131 (723)
T 1xfd_A 60 SLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS--NAKLQYAGWGPKGQQLIFI------ 131 (723)
T ss_dssp TTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC--SCCCSBCCBCSSTTCEEEE------
T ss_pred ccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccc--cccccccEECCCCCEEEEE------
Confidence 378899999999999987532122223347899999999988777654321 1115579999999999988
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC--Ccc----------
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVY---------- 334 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~---------- 334 (953)
...+|+++++ +|+.++++.. ..+
T Consensus 132 --------------------------------------------~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~ 167 (723)
T 1xfd_A 132 --------------------------------------------FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY 167 (723)
T ss_dssp --------------------------------------------ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred --------------------------------------------ECCeEEEEECCCCceEEEecCCCCCceECcccceeE
Confidence 2246889998 7877777654 222
Q ss_pred --------cccccCCCCcEEEEEEecCCcc--ccc----------------c-CC--CCCcceEEEeccCceE-EEeccC
Q 002209 335 --------TSLDPSPDEKYILISSIHRPYS--FIV----------------P-CG--RFPRQVGVWTTDGIFV-RELCDL 384 (953)
Q Consensus 335 --------~~~~~SpDG~~l~~~~~~~~~~--~~~----------------~-~~--~~~~~i~~~d~~g~~~-~~l~~~ 384 (953)
..++|||||++|+|.+.+.... +.. + .+ .....|++||+++++. +.+...
T Consensus 168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC
Confidence 5799999999999998653210 000 0 00 1123799999987663 555432
Q ss_pred CCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec--cccc----
Q 002209 385 PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRY---- 458 (953)
Q Consensus 385 ~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~--~~~~---- 458 (953)
... ......+..++|||||+.++++.... .....|+++|+ .+++...+... ...+
T Consensus 248 ~~~-------~~~~~~~~~~~~SpDg~~l~~~~~~~---------~~~~~i~~~d~---~~g~~~~~~~~~~~~~~~~~~ 308 (723)
T 1xfd_A 248 DDP-------RMREYYITMVKWATSTKVAVTWLNRA---------QNVSILTLCDA---TTGVCTKKHEDESEAWLHRQN 308 (723)
T ss_dssp CCG-------GGSSEEEEEEEESSSSEEEEEEEETT---------SCEEEEEEEET---TTCCEEEEEEEECSSCCCCCC
T ss_pred ccC-------CCccceeEEEEEeCCCeEEEEEEcCC---------CCeEEEEEEeC---CCCcceEEEEeccCCEEeccC
Confidence 100 00112345789999999776663321 22457899996 55665554322 2222
Q ss_pred CCeeeccCCceEEEE-Eeccc---CceEEEEEc-CCCCCCC---cEEeecCCCccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 459 GGISWCDDSLALVYE-SWYKT---RRTRTWVIS-PGSKDVA---PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 459 ~~~~~SpDg~~l~~~-~~~~~---~~~~l~~~d-~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
..+.|||||++|++. ...++ ...+||.++ ..++ . .+.++...... .. .+.|||||++|+|....
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~~~~~l~~~~~~~-~~-----~~~~spdg~~l~~~~~~ 380 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS--SNDNIQSITSGDWDV-TK-----ILAYDEKGNKIYFLSTE 380 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS--SSCCCCBSCCSSSCE-EE-----EEEEETTTTEEEEEESS
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCC--CccceeEeecCCeEE-Ee-----eeEEcCCCCEEEEEEcC
Confidence 378999999999987 43332 145899999 4553 3 34444322111 10 15799999999988732
Q ss_pred ccCCCcEEEEecCCCCCCCCCCeEEEEECCCC-ceEEEecc--CcccceeeeEeeccCCccccccccCCEEEEEEecCCC
Q 002209 531 ENDEGTYILLNGNGATPEGNIPFLDLFDINTG-SKERIWES--DKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTE 607 (953)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~-~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 607 (953)
.. ....+||.++++++ +.++|+.. ... .....+|||||+.+++..+++..
T Consensus 381 ~~----------------~~~~~l~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~spdg~~l~~~~~~~~~ 433 (723)
T 1xfd_A 381 DL----------------PRRRQLYSANTVGNFNRQCLSCDLVENC-----------TYFSASFSHSMDFFLLKCEGPGV 433 (723)
T ss_dssp SC----------------TTCCEEEEECSSTTCCCBCSSTTSSSSC-----------CCCEEEECTTSSEEEEECCSSSS
T ss_pred CC----------------CcceEEEEEeCCCCCCcceecccccCCC-----------CeEEEEECCCCCEEEEEccCCCC
Confidence 10 02345777777665 44555532 110 01235799999999999999998
Q ss_pred CceEEEEECCCCCeeEEecCCCC----CCCcCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcC
Q 002209 608 NTQYYIQSWPDKKSCQITDFPHP----YPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKS 683 (953)
Q Consensus 608 p~~l~~~~~~~g~~~~Lt~~~~~----~~~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~ 683 (953)
|..++. +..+++...+...+.. +........+.+++++.+| ++++++++|+++++.+ ++|+||++||++...
T Consensus 434 p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~P~~~~~~~--~~p~vv~~HG~~~~~ 509 (723)
T 1xfd_A 434 PMVTVH-NTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEIDDY-NLPMQILKPATFTDTT--HYPLLLVVDGTPGSQ 509 (723)
T ss_dssp CCEEEE-ETTTCCEEEEEECCHHHHHHHHTSCCCBCCBCCEEETTE-EECCBEEBCSSCCSSS--CEEEEEECCCCTTCC
T ss_pred CeEEEE-ECCCCCEEEEeccChhhhhhhhhccCCCceEEEEEcCCc-eEEEEEEeCCCCCCCC--ccCEEEEEcCCCCcc
Confidence 876654 6555554333322211 1223334567888998899 9999999999875543 599999999986431
Q ss_pred cCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh---hhhHHHHHHHHHHHHHHHHHcCCCCCCc
Q 002209 684 KDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSK 760 (953)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 760 (953)
.. ...|. .......|+++||+|+.+|+++..++|..+.. ..+....+.|+.+++++|.+++.+|.+|
T Consensus 510 ~~--------~~~~~--~~~~~~~l~~~G~~vv~~d~rG~g~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~ 579 (723)
T 1xfd_A 510 SV--------AEKFE--VSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTR 579 (723)
T ss_dssp CC--------CCCCC--CSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEE
T ss_pred cc--------Ccccc--ccHHHHHhhcCCEEEEEECCCCCccccHHHHHHHHhccCcccHHHHHHHHHHHHhCCCcChhh
Confidence 10 01111 01223456678999999877665554433221 2233467899999999999888889999
Q ss_pred EEEEEeChHHHHHHHHHHhC----CCcccEEEEcccCCCCCCCCcCccc-ccchhhhhHHHHHhcCcccccCCCC-CcEE
Q 002209 761 IAVGGHSYGAFMTANLLAHA----PHLFCCGIARSGAYNRTLTPFGFQN-EDRTLWEATSTYVEMSPFMSANKLK-KPIL 834 (953)
Q Consensus 761 i~l~G~S~GG~~a~~~a~~~----p~~~~a~v~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~sp~~~~~~i~-~P~L 834 (953)
++|+||||||++++.++.++ |++|+++|+.+|+.++......+.. ....++...+.+...++...+.+++ +|+|
T Consensus 580 i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l 659 (723)
T 1xfd_A 580 VAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFL 659 (723)
T ss_dssp EEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSBHHHHHHHHCCCSSCCSSTTTTCTHHHHTSCCSCEEE
T ss_pred EEEEEECHHHHHHHHHHHhccccCCCeEEEEEEccCCcchHHhhhhccHhhcCCccCChhHHHhcChhhHHhhcCCCCEE
Confidence 99999999999999999999 9999999999998876532211100 0011122223344556777888999 7999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 835 LVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 835 i~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
|+||++|.+|| +.++.+++++++..+.+++++++|+++|.+...+....+++.+.+||.++|+
T Consensus 660 ii~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 722 (723)
T 1xfd_A 660 IIHPTADEKIH--FQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVECFR 722 (723)
T ss_dssp EEEETTCSSSC--HHHHHHHHHHHHHTTCCCEEEEETTCCSSCCCHHHHHHHHHHHHHHHTTTTC
T ss_pred EEEeCCCCCcC--HhHHHHHHHHHHHCCCCeEEEEECCCCcccccCcchHHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999999999999999999999986566678889999999998774
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-51 Score=498.95 Aligned_cols=569 Identities=14% Similarity=0.103 Sum_probs=407.1
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..++|||| ++|+|.. ...||++|+++++.++++..... +..++|||||+.|+++
T Consensus 83 ~v~~~~~spd-~~~~~~~----------~~~i~~~d~~~~~~~~l~~~~~~-----~~~~~~SpdG~~la~~-------- 138 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLFT----------QGGLVGFDMLARKVTYLFDTNEE-----TASLDFSPVGDRVAYV-------- 138 (706)
T ss_dssp CCEEEEETTT-TEEEEEE----------TTEEEEEETTTTEEEEEECCTTC-----CTTCEECTTSSEEEEE--------
T ss_pred CceeEEECCC-CeEEEEE----------CCEEEEEECCCCceEEccCCccc-----ccCCcCCCCCCEEEEE--------
Confidence 4788999999 8899865 36999999999988888765432 6689999999999987
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C-----CceeEeCCC-Cc---------
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D-----GTVKEIGPP-AV--------- 333 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~-----g~~~~l~~~-~~--------- 333 (953)
...+|+++++ + |+.++++.. ..
T Consensus 139 ------------------------------------------~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 176 (706)
T 2z3z_A 139 ------------------------------------------RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH 176 (706)
T ss_dssp ------------------------------------------ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred ------------------------------------------ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence 2257889999 7 888777655 22
Q ss_pred ------ccccccCCCCcEEEEEEecCCcc-------------------cccc-CCCCCcceEEEeccCceEEEeccCCCc
Q 002209 334 ------YTSLDPSPDEKYILISSIHRPYS-------------------FIVP-CGRFPRQVGVWTTDGIFVRELCDLPLA 387 (953)
Q Consensus 334 ------~~~~~~SpDG~~l~~~~~~~~~~-------------------~~~~-~~~~~~~i~~~d~~g~~~~~l~~~~~~ 387 (953)
+..++|||||++|++.+.+.... +..+ .......|++||+++++.+.+......
T Consensus 177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 256 (706)
T 2z3z_A 177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK 256 (706)
T ss_dssp GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence 47899999999999998432100 0000 011234799999998887666532111
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCC-CceEEeec-cc----ccCCe
Q 002209 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-GPEILHKL-DL----RYGGI 461 (953)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~-~~~~l~~~-~~----~~~~~ 461 (953)
...+..++|||||+.|++...... .....|+++|+ .++ ..+.+... .. ....+
T Consensus 257 ----------~~~~~~~~~spdg~~l~~~~~~~~--------~~~~~v~~~d~---~~g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 257 ----------EKFLTNLSWSPDENILYVAEVNRA--------QNECKVNAYDA---ETGRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp ----------TCEEEEEEECTTSSEEEEEEECTT--------SCEEEEEEEET---TTCCEEEEEEEEECSSCCCCCSCC
T ss_pred ----------ceeEeeEEEECCCCEEEEEEeCCC--------CCeeEEEEEEC---CCCceeeEEEEccCCCeECccCCc
Confidence 123467999999998888622110 12347899996 444 44444322 11 12568
Q ss_pred eecc--CCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEE
Q 002209 462 SWCD--DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYIL 539 (953)
Q Consensus 462 ~~Sp--Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~ 539 (953)
.||| ||+.|+.+ ..+ +..+||.++.+++ ....++..... +.. .+.|||||++|++.....
T Consensus 316 ~~sp~~dg~~l~~~-~~~-g~~~l~~~~~~~~--~~~~l~~~~~~-v~~-----~~~~spdg~~l~~~~~~~-------- 377 (706)
T 2z3z_A 316 TFLPGSNNQFIWQS-RRD-GWNHLYLYDTTGR--LIRQVTKGEWE-VTN-----FAGFDPKGTRLYFESTEA-------- 377 (706)
T ss_dssp EECTTCSSEEEEEE-CTT-SSCEEEEEETTSC--EEEECCCSSSC-EEE-----EEEECTTSSEEEEEESSS--------
T ss_pred eeecCCCCEEEEEE-ccC-CccEEEEEECCCC--EEEecCCCCeE-EEe-----eeEEcCCCCEEEEEecCC--------
Confidence 9999 99965544 433 3358999997653 33444432211 110 057999999999887321
Q ss_pred EecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002209 540 LNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (953)
Q Consensus 540 ~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g 619 (953)
. ....+||.+|+++++.++|+..... ...+|||||+.+++..++...|.+++++++.++
T Consensus 378 ------~--~~~~~l~~~d~~~~~~~~l~~~~~~-------------~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 378 ------S--PLERHFYCIDIKGGKTKDLTPESGM-------------HRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp ------C--TTCBEEEEEETTCCCCEESCCSSSE-------------EEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred ------C--CceEEEEEEEcCCCCceeccCCCce-------------EEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 0 0134699999999888877743321 124789999999999999999999999999888
Q ss_pred CeeEEecCCCCCCCcCCCceEEEEEEcCCC-cEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCC
Q 002209 620 KSCQITDFPHPYPQLASLQKELIKYQRKDG-VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFP 698 (953)
Q Consensus 620 ~~~~Lt~~~~~~~~~~~~~~~~~~~~~~dg-~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~ 698 (953)
+...++..+ ++..+.....+.++++..+| .+++++++.|+++++++ ++|+||++|||+..... . ..|.
T Consensus 437 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~--~~p~iv~~HGg~~~~~~-----~---~~~~ 505 (706)
T 2z3z_A 437 SHTLLEAKN-PDTGYAMPEIRTGTIMAADGQTPLYYKLTMPLHFDPAK--KYPVIVYVYGGPHAQLV-----T---KTWR 505 (706)
T ss_dssp EEEEEECC-------CCCCEEEEEEECTTSSSEEEEEEECCTTCCTTS--CEEEEEECCCCTTCCCC-----C---SCC-
T ss_pred eEeeccccc-hhhhcCCCCcEEEEEEcCCCCEEEEEEEEeCCCCCCCC--CccEEEEecCCCCceee-----c---cccc
Confidence 755555432 34444555678899999999 89999999999876544 48999999998643210 0 1121
Q ss_pred CccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002209 699 RIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (953)
Q Consensus 699 ~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (953)
.....++..|+++||+|+++|++|..+.+..+.. ..+....++|+.+++++|.+++.+|.++++|+||||||++++.
T Consensus 506 ~~~~~~~~~la~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 585 (706)
T 2z3z_A 506 SSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTN 585 (706)
T ss_dssp ---CCHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHH
T ss_pred cCchHHHHHHHhCCcEEEEEecCCCcccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEEEChHHHHHHH
Confidence 1111246788899999999777655444433221 2344567899999999999888889999999999999999999
Q ss_pred HHHhCCCcccEEEEcccCCCCCCCCcCccc-ccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHH
Q 002209 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQN-EDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (953)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~ 854 (953)
++.++|++|+++|+.+|+.++......+.. ....++...+.|...+|...+.++++|+|++||++|.+|| +++++++
T Consensus 586 ~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~--~~~~~~~ 663 (706)
T 2z3z_A 586 LMLTHGDVFKVGVAGGPVIDWNRYAIMYGERYFDAPQENPEGYDAANLLKRAGDLKGRLMLIHGAIDPVVV--WQHSLLF 663 (706)
T ss_dssp HHHHSTTTEEEEEEESCCCCGGGSBHHHHHHHHCCTTTCHHHHHHHCGGGGGGGCCSEEEEEEETTCSSSC--THHHHHH
T ss_pred HHHhCCCcEEEEEEcCCccchHHHHhhhhhhhcCCcccChhhhhhCCHhHhHHhCCCCEEEEeeCCCCCCC--HHHHHHH
Confidence 999999999999999998775432211110 1123345567788889999999999999999999999999 9999999
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 855 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
+++++..+++++++++|+++|.+... ....+++.+.+||+++|
T Consensus 664 ~~~l~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~~i~~fl~~~l 706 (706)
T 2z3z_A 664 LDACVKARTYPDYYVYPSHEHNVMGP-DRVHLYETITRYFTDHL 706 (706)
T ss_dssp HHHHHHHTCCCEEEEETTCCSSCCTT-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCeEEEEeCCCCCCCCcc-cHHHHHHHHHHHHHHhC
Confidence 99999988999999999999998644 67788999999999875
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-51 Score=502.67 Aligned_cols=603 Identities=15% Similarity=0.080 Sum_probs=411.2
Q ss_pred ceEEEEccCCCCCCceeeeecCCCC--CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce---eecccCC
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDG--AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA---RPLFQSP 238 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~--~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~---~~lt~~~ 238 (953)
+|++||+.+ ++.+++...... ..+..++|||||++|+|.......-..+....||++|+++|+. +++.
T Consensus 37 ~i~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~--- 109 (719)
T 1z68_A 37 NIVLYNIET----GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP--- 109 (719)
T ss_dssp CEEEEESSS----CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC---
T ss_pred CEEEEEcCC----CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC---
Confidence 689999854 445555421100 0278999999999999987532111112357899999999988 6553
Q ss_pred CccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEE
Q 002209 239 DIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (953)
Q Consensus 239 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 318 (953)
.. +..++|||||+.|+|+ ...+|++
T Consensus 110 ~~-----~~~~~~SPDG~~la~~--------------------------------------------------~~~~i~~ 134 (719)
T 1z68_A 110 RP-----IQYLCWSPVGSKLAYV--------------------------------------------------YQNNIYL 134 (719)
T ss_dssp SS-----BCCEEECSSTTCEEEE--------------------------------------------------ETTEEEE
T ss_pred cc-----cccceECCCCCEEEEE--------------------------------------------------ECCeEEE
Confidence 21 5689999999999987 2247888
Q ss_pred EEc-CCceeEeCCCC--c------------------ccccccCCCCcEEEEEEecCCccc--------------------
Q 002209 319 VSL-DGTVKEIGPPA--V------------------YTSLDPSPDEKYILISSIHRPYSF-------------------- 357 (953)
Q Consensus 319 ~~~-~g~~~~l~~~~--~------------------~~~~~~SpDG~~l~~~~~~~~~~~-------------------- 357 (953)
+++ +|+.++++..+ . ...++|||||++|+|.+.+.....
T Consensus 135 ~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~y 214 (719)
T 1z68_A 135 KQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPY 214 (719)
T ss_dssp ESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEEC
T ss_pred EeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecC
Confidence 898 78777776431 1 147999999999999986532100
Q ss_pred ccc-CCCCCcceEEEeccCceEE---EeccCCCcccCCccccccccCccceeeccCCCCceEE-EEeccCCCcccccccC
Q 002209 358 IVP-CGRFPRQVGVWTTDGIFVR---ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW-AETQDGGDAKVEVTPR 432 (953)
Q Consensus 358 ~~~-~~~~~~~i~~~d~~g~~~~---~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~-~~~~~~~~~~~~~~~~ 432 (953)
..+ ......+|++||++++... .+... ..+.+....+..++|||||+ +++. .++. ...
T Consensus 215 p~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~---------~~~ 277 (719)
T 1z68_A 215 PKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP-------AMIASSDYYFSWLTWVTDER-VCLQWLKRV---------QNV 277 (719)
T ss_dssp CBTTSCCCEEEEEEEESSCHHHHCCEECCCC-------HHHHTSCEEEEEEEESSSSE-EEEEEEESS---------TTE
T ss_pred CCCCCCCCeeEEEEEECCCCCccceeEccCC-------ccCCCCcceEEEeEEeCCCe-EEEEEeccc---------cCe
Confidence 000 0011237889999876542 22210 00001112346789999976 4444 2211 123
Q ss_pred CeEEEEe----cCCCCCCCceEEe-----ecccccC-----CeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEe
Q 002209 433 DIIYTQQ----AEPVQGEGPEILH-----KLDLRYG-----GISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (953)
Q Consensus 433 ~~l~~~d----~~~~~g~~~~~l~-----~~~~~~~-----~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 498 (953)
..|+++| + .+++.+.+. .....+. .+.|||||+.|++......+..+||.++++++ +.+.+
T Consensus 278 ~~l~~~d~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~--~~~~l 352 (719)
T 1z68_A 278 SVLSICDFREDW---QTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE--NAIQI 352 (719)
T ss_dssp EEEEEEEECSSS---SSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST--TCEEC
T ss_pred EEEEEEcccCCC---CCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC--ceEec
Confidence 4688998 5 444443333 2333344 78999999999886554445578999999875 45555
Q ss_pred ecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCC--ceEEEeccCc-ccc
Q 002209 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTG--SKERIWESDK-EKY 575 (953)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~--~~~~l~~~~~-~~~ 575 (953)
+..... +.. +.++ ||++|+|...... . .....+||.++++++ +.++|+..-. ..
T Consensus 353 t~~~~~-v~~------~~~~-d~~~i~~~~~~~~------------~--~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~- 409 (719)
T 1z68_A 353 TSGKWE-AIN------IFRV-TQDSLFYSSNEFE------------E--YPGRRNIYRISIGSYPPSKKCVTCHLRKER- 409 (719)
T ss_dssp SCSSSC-EEE------EEEE-CSSEEEEEESCGG------------G--CTTCBEEEEEECSSSSCCEEESSTTTTTTT-
T ss_pred ccCceE-EEE------EEEE-eCCEEEEEEecCC------------C--CCceEEEEEEeCCCCCCCceeccCccCCCC-
Confidence 543221 111 4456 9999998874300 0 012346888888666 4566654210 00
Q ss_pred eeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEecCCCC----CCCcCCCceEEEEEEcCCCcE
Q 002209 576 YETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHP----YPQLASLQKELIKYQRKDGVQ 651 (953)
Q Consensus 576 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~~~----~~~~~~~~~~~~~~~~~dg~~ 651 (953)
......+||+|++.+++..+++..| .++++++.+++..+++..+.. +........+.++++..+ .+
T Consensus 410 --------~~~~~~~~s~dg~~l~~~~s~~~~p-~~~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 479 (719)
T 1z68_A 410 --------CQYYTASFSDYAKYYALVCYGPGIP-ISTLHDGRTDQEIKILEENKELENALKNIQLPKEEIKKLEVDE-IT 479 (719)
T ss_dssp --------BCBEEEEECGGGSSEEEEECCBSSC-EEEEECSSSCCEEEEEECCHHHHHHTTSBCCCEEEEEEEEETT-EE
T ss_pred --------CceEEEEECCCCCEEEEEcCCCCCC-eEEEEECCCCCEEEEeecchhhhhhhccccCCceEEEEEecCC-eE
Confidence 0001257899999999998888777 688899888887777765543 223344467889999877 99
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCcEEEEcCCCCCCCCCChh
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEE 730 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~G~G~~~ 730 (953)
+++++++|+++++++ ++|+||++||++..... ...| ...+...++ ++||+|+.++++|..+.|..+
T Consensus 480 l~~~~~~P~~~~~~~--~~p~vl~~hG~~~~~~~--------~~~~---~~~~~~~l~~~~G~~v~~~d~rG~g~~~~~~ 546 (719)
T 1z68_A 480 LWYKMILPPQFDRSK--KYPLLIQVYGGPCSQSV--------RSVF---AVNWISYLASKEGMVIALVDGRGTAFQGDKL 546 (719)
T ss_dssp EEEEEEECTTCCSSS--CEEEEEEECCCTTBCCC--------CCCC---CCCHHHHHHHTTCCEEEEEECTTBSSSCHHH
T ss_pred EEEEEEeCCCCCCCC--CccEEEEECCCCCcCcc--------cccc---hhhHHHHHHhcCCeEEEEEcCCCCCCCchhh
Confidence 999999999865443 59999999998643210 0111 112344454 689999998776655544332
Q ss_pred hh---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCccc-c
Q 002209 731 AN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN-E 806 (953)
Q Consensus 731 ~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~-~ 806 (953)
.. ..+....+.|+.+++++|.+++.+|+++++|+||||||++++.++.++|++|+++|+++|+.++......+.. .
T Consensus 547 ~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~ 626 (719)
T 1z68_A 547 LYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYASVYTERF 626 (719)
T ss_dssp HGGGTTCTTHHHHHHHHHHHHHHHTTSCEEEEEEEEEEETHHHHHHHHHHTTSSSCCSEEEEESCCCCTTTSBHHHHHHH
T ss_pred HHHHhhccCcccHHHHHHHHHHHHhcCCCCCceEEEEEECHHHHHHHHHHHhCCCceEEEEEcCCccChHHhccccchhh
Confidence 21 2234567899999999999988889999999999999999999999999999999999999876432211110 0
Q ss_pred cchh--hhhHHHHHhcCcccccCCCCC-cEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH
Q 002209 807 DRTL--WEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883 (953)
Q Consensus 807 ~~~~--~~~~~~~~~~sp~~~~~~i~~-P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~ 883 (953)
.+.+ ++..+.|...+|+..+.+++. |+||+||++|.+|| +.++.+++++|+..+++++++++|+++|.+ ..+..
T Consensus 627 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~-~~~~~ 703 (719)
T 1z68_A 627 MGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVH--FQNSAQIAKALVNAQVDFQAMWYSDQNHGL-SGLST 703 (719)
T ss_dssp HCCSSTTTTHHHHHHTCSGGGGGGGTTSEEEEEEETTCSSSC--THHHHHHHHHHHHTTCCCEEEEETTCCTTC-CTHHH
T ss_pred cCCcccccchhhhhhCCHhHHHhcCCCCcEEEEEeCCCCCcC--HHHHHHHHHHHHHCCCceEEEEECcCCCCC-CcccH
Confidence 0111 345567788889899999998 89999999999999 999999999999999999999999999998 45567
Q ss_pred HHHHHHHHHHHHHhcc
Q 002209 884 MHVLWETDRWLQKYCV 899 (953)
Q Consensus 884 ~~~~~~i~~fl~~~l~ 899 (953)
..+++.+.+||+++|+
T Consensus 704 ~~~~~~i~~fl~~~l~ 719 (719)
T 1z68_A 704 NHLYTHMTHFLKQCFS 719 (719)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhC
Confidence 7889999999999873
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=470.98 Aligned_cols=575 Identities=16% Similarity=0.152 Sum_probs=414.3
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccccccc---------ceEEe--cCCeE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFD---------NFVWV--NNSTL 257 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~---------~~~ws--pDg~~ 257 (953)
..+..|+||+ +.++|...+. ..++...||++ ..+|+.++|+..+.. +. .+.|+ |||+.
T Consensus 24 ~~~~~~~~s~--~~~~~~~~~~---~~~~~~~l~~~-~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~SPDg~~ 92 (662)
T 3azo_A 24 GRPACVGAVG--DEVWWVAPRP---AEAGRATLVRR-RADGAEESALPAPWN-----VRNRVFEYSGFPWAGVPRPAGGP 92 (662)
T ss_dssp SCCEEEEEET--TEEEEEEEET---TTTTEEEEEEE-CTTSCEEESSCTTCC-----BCCCGGGTCCCCEEEECCSSSSC
T ss_pred CccceeEEcC--CeEEEEecCc---ccCCcEEEEEE-CCCCCcceeCCCCcc-----ccccccccCCccceeeeecCCCe
Confidence 4688899995 4788877532 23457789988 567888889876532 22 56677 99998
Q ss_pred -EEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcC----CceeEeCC--
Q 002209 258 -LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD----GTVKEIGP-- 330 (953)
Q Consensus 258 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~----g~~~~l~~-- 330 (953)
|+|+.. ...+||+++++ |+.++++.
T Consensus 93 ~la~~~~------------------------------------------------~~~~l~~~~~~~~g~~~~~~l~~~~ 124 (662)
T 3azo_A 93 LLVFTHF------------------------------------------------GDQRLYAFEPDAPGGAVPRPLTPVS 124 (662)
T ss_dssp EEEEEBT------------------------------------------------TTCCEEEECTTSTTCCCCEECSCCC
T ss_pred EEEEEEC------------------------------------------------CCCeEEEEcCCCCCCCCCEeccCCc
Confidence 888711 12468999986 77888876
Q ss_pred ---C-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC------ceEEEec-cCCCcccCCcccccccc
Q 002209 331 ---P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG------IFVRELC-DLPLAEDIPIAFNSVRK 399 (953)
Q Consensus 331 ---~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g------~~~~~l~-~~~~~~~~p~~~~~~~~ 399 (953)
. ..+..++|||||++|+|++.+.... .......+|++|++++ +..+.++ ... .
T Consensus 125 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~-------------~ 188 (662)
T 3azo_A 125 AVGGGLRWADPVLLPERGEVWCMAEEFTGE---GPSDVRRFLAAVPLDGSAAADRSAVRELSDDAH-------------R 188 (662)
T ss_dssp CSTTCEEEEEEEEETTTTEEEEEEEEECSS---STTCEEEEEEEEETTSTTTTCGGGSEESSCSCS-------------S
T ss_pred cCCCCccccCcEECCCCCEEEEEEecccCC---CCCCceeEEEEEECCCCccccCCceeEEEecCC-------------C
Confidence 3 4567899999999999998652100 0001124899999998 7777776 432 1
Q ss_pred CccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCC-CC---CceEEeec-ccccCCeeeccCCceEEEEE
Q 002209 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ-GE---GPEILHKL-DLRYGGISWCDDSLALVYES 474 (953)
Q Consensus 400 ~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-g~---~~~~l~~~-~~~~~~~~~SpDg~~l~~~~ 474 (953)
.+..++|||||+.|+|......+.. .....|+++++ + ++ +.+.++.. ...+..+.|||||+ |+|.+
T Consensus 189 ~~~~~~~SpDG~~la~~~~~~~~~~-----~~~~~i~~~d~---~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~ 259 (662)
T 3azo_A 189 FVTGPRLSPDGRQAVWLAWDHPRMP-----WEGTELKTARV---TEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVAT 259 (662)
T ss_dssp EECCCEECTTSSEEEEEEECTTCCT-----TTCEEEEEEEE---CTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEE
T ss_pred cccCceECCCCCEEEEEECCCCCCC-----CCCcEEEEEEE---CCCCcccccEEeCCCCCceEcceEECCCCe-EEEEE
Confidence 2346889999999998743221100 12357999997 4 34 55566554 46677899999999 77777
Q ss_pred ecccCceEEEEEcCCCCCCCcEEeecCCCccccC---CCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCC
Q 002209 475 WYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYS---DPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNI 551 (953)
Q Consensus 475 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (953)
+.++ ..+||.++++++ +.+.++...... .. .++...+.|+|||+.++... . ..
T Consensus 260 ~~~~-~~~l~~~~~~~~--~~~~l~~~~~~~-~~p~w~~~~~~~~~~~~~~~~~~~~-------------------~-~~ 315 (662)
T 3azo_A 260 DRTG-WWNLHRVDPATG--AATQLCRREEEF-AGPLWTPGMRWFAPLANGLIAVVHG-------------------K-GA 315 (662)
T ss_dssp CTTS-SCEEEEECTTTC--CEEESSCCSSBS-SCCCCSTTCCSEEECTTSCEEEEEB-------------------S-SS
T ss_pred CCCC-CeEEEEEECCCC--ceeecccccccc-cCccccccCceEeEeCCCEEEEEEE-------------------c-Cc
Confidence 6553 358999998764 445554432211 10 00001144555655433322 1 24
Q ss_pred CeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccc-cccCCEEEEEEecCCCCceEEEEECCCCCeeEEecCCCC
Q 002209 552 PFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDL-YLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHP 630 (953)
Q Consensus 552 ~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~~~ 630 (953)
.+||.+|+++++.++|+...+. +. .+ ++|++.+++...+...|..+|++++.+++.++|+..+..
T Consensus 316 ~~l~~~d~~~~~~~~l~~~~~~-----~~---------~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~ 381 (662)
T 3azo_A 316 AVLGILDPESGELVDAAGPWTE-----WA---------ATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTD 381 (662)
T ss_dssp CEEEEEETTTTEEEECCSSCCE-----EE---------EEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCC
T ss_pred cEEEEEECCCCcEEEecCCCCe-----EE---------EEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcc
Confidence 5699999998988887655432 11 23 678899999999999999999999999999999876543
Q ss_pred C-CCcCCCceEEEEEEcCCCcEEEEEEEcCCCCC--CCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHH
Q 002209 631 Y-PQLASLQKELIKYQRKDGVQLSATLYLPPGYD--PSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL 707 (953)
Q Consensus 631 ~-~~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~--~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (953)
. ........+.+++...+|..++++++.|++++ ....+++|+||++||++..... ..| ....+.
T Consensus 382 ~~~~~~~~~~~~~~~~~~dg~~i~~~~~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~~---------~~~----~~~~~~ 448 (662)
T 3azo_A 382 PVDPAYYPEPQIRTFTAPDGREIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVP---------AVL----DLDVAY 448 (662)
T ss_dssp SSCGGGSCCCEEEEEECTTSCEEEEEEECCCCSSEECCTTCCCCEEEEECSSSSSCCC---------CSC----CHHHHH
T ss_pred cCCccccCcceEEEEEcCCCCEEEEEEECCCCccccCCCCCCccEEEEECCCCCccCc---------ccc----hHHHHH
Confidence 2 23333457889999889999999999998754 0112358999999998633210 012 245677
Q ss_pred HHHcCcEEEEcCCCCCCCCCChhhh---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcc
Q 002209 708 WLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (953)
Q Consensus 708 la~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 784 (953)
|+++||+|+.+++++..|+|.++.. ..+....++|+.+++++|.+++.+|+++++|+||||||+++++++.+ |++|
T Consensus 449 l~~~G~~v~~~d~rG~~~~G~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~-~~~~ 527 (662)
T 3azo_A 449 FTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS-TDVY 527 (662)
T ss_dssp HHTTTCEEEEEECTTCSSSCHHHHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHH-CCCC
T ss_pred HHhCCCEEEEECCCCCCCccHHHHHhhccccccccHHHHHHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhC-cCce
Confidence 8999999999999888889988643 23445678999999999999988999999999999999999999887 8999
Q ss_pred cEEEEcccCCCCCCC------CcC--cc-cccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHH
Q 002209 785 CCGIARSGAYNRTLT------PFG--FQ-NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (953)
Q Consensus 785 ~a~v~~~~~~d~~~~------~~~--~~-~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~ 855 (953)
+++|+.+|+.++... .+. +. ...+...+..+.|...+|+.++.++++|+||+||++|.+|| +.++++++
T Consensus 528 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~ 605 (662)
T 3azo_A 528 ACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCP--PEQCDRFL 605 (662)
T ss_dssp SEEEEESCCCCHHHHHTTCSCGGGTTHHHHHTCCTTTCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSC--THHHHHHH
T ss_pred EEEEecCCccCHHHHhcccccchhhHhHHHHhCCCccchhHHHhhChHhHhccCCCCEEEEeeCCCCCCC--HHHHHHHH
Confidence 999999998763211 000 00 00111124567788899999999999999999999999999 99999999
Q ss_pred HHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccCC
Q 002209 856 NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 856 ~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (953)
++|+..+++++++++|+++|.+...++...+++.+.+||.++++..
T Consensus 606 ~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~ 651 (662)
T 3azo_A 606 EAVAGCGVPHAYLSFEGEGHGFRRKETMVRALEAELSLYAQVFGVE 651 (662)
T ss_dssp HHHTTSCCCEEEEEETTCCSSCCSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCCEEEEEECCCCCCCCChHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999998766677889999999999999654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=466.36 Aligned_cols=538 Identities=16% Similarity=0.141 Sum_probs=395.7
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+...+|||||++|||.+.. ++..+||.+ ++|+.++++...... +..++|||| +.++.. ....+
T Consensus 23 ~~~~~~~~~DG~~la~~s~~------~g~~~lw~~--~~g~~~~lt~~~~~~----~~~~~~spd-~~l~~~-~~~~g-- 86 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFS------EGSVNAYLY--DGGETVKLNREPINS----VLDPHYGVG-RVILVR-DVSKG-- 86 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEE------TTEEEEEEE--ETTEEEECCSSCCSE----ECEECTTCS-EEEEEE-ECSTT--
T ss_pred chheeecCCCCCeEEEEEcc------CCceeEEEE--cCCCcEeeecccccc----cccccCCCC-eEEEEe-ccCCC--
Confidence 47788999999999998752 356788886 588999998766322 668999999 555433 11000
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CCceeEeCCCCcccccccCCCCcEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPPAVYTSLDPSPDEKYIL 347 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g~~~~l~~~~~~~~~~~SpDG~~l~ 347 (953)
+ ...+||.+++ +|....++........+|||||+.++
T Consensus 87 ----------------------------------~-------~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~ 125 (582)
T 3o4h_A 87 ----------------------------------A-------EQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVV 125 (582)
T ss_dssp ----------------------------------S-------CCEEEEEEETTSTTCCEECTTSCSBEEEEEEECSSCEE
T ss_pred ----------------------------------C-------cceEEEEEeccCCCccccccCCCCceeeeeCCCCCeEE
Confidence 0 2247889998 77766776654455679999999998
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
|++... ..+.+||+++++.++++..+. .+++|||||+.|++.....
T Consensus 126 ~~s~~~------------~~~~l~d~~~g~~~~l~~~~~---------------~~~~~spDG~~la~~~~~~------- 171 (582)
T 3o4h_A 126 FTGATE------------DRVALYALDGGGLRELARLPG---------------FGFVSDIRGDLIAGLGFFG------- 171 (582)
T ss_dssp EEEECS------------SCEEEEEEETTEEEEEEEESS---------------CEEEEEEETTEEEEEEEEE-------
T ss_pred EEecCC------------CCceEEEccCCcEEEeecCCC---------------ceEEECCCCCEEEEEEEcC-------
Confidence 887432 256699999988888876431 4788999999999873322
Q ss_pred ccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCcccc
Q 002209 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVY 507 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 507 (953)
.....||++|+ ++++.+.++.....+..++|||||+.|+ .+..+ +..+||++|++++ +.+ ++......+.
T Consensus 172 --~~~~~i~~~d~---~~g~~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~-~~~~i~~~d~~~~--~~~-~~~~~~~~~~ 241 (582)
T 3o4h_A 172 --GGRVSLFTSNL---SSGGLRVFDSGEGSFSSASISPGMKVTA-GLETA-REARLVTVDPRDG--SVE-DLELPSKDFS 241 (582)
T ss_dssp --TTEEEEEEEET---TTCCCEEECCSSCEEEEEEECTTSCEEE-EEECS-SCEEEEEECTTTC--CEE-ECCCSCSHHH
T ss_pred --CCCeEEEEEcC---CCCCceEeecCCCccccceECCCCCEEE-EccCC-CeeEEEEEcCCCC--cEE-EccCCCcChh
Confidence 12246999996 6778888887777778899999999999 33333 3358999999986 334 3332222222
Q ss_pred CCCCCCCeE--------eccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeee
Q 002209 508 SDPGSPMMR--------RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (953)
Q Consensus 508 ~~~~~p~~~--------~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~ 579 (953)
. +. ||||| .+++..... ..+.+|++ |+..+. ..+. +
T Consensus 242 ~------~~~~~~~~~~~spdg-~~~~~~~~~--------------------g~~~l~~~--g~~~~~--~~~~-----v 285 (582)
T 3o4h_A 242 S------YRPTAITWLGYLPDG-RLAVVARRE--------------------GRSAVFID--GERVEA--PQGN-----H 285 (582)
T ss_dssp H------HCCSEEEEEEECTTS-CEEEEEEET--------------------TEEEEEET--TEEECC--CSSE-----E
T ss_pred h------hhhccccceeEcCCC-cEEEEEEcC--------------------CcEEEEEE--CCeecc--CCCc-----e
Confidence 1 44 99999 666655321 13667777 544331 1111 1
Q ss_pred EeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEecCCCCCCC---cCCCceEEEEEEcCCCcEEEEEE
Q 002209 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQ---LASLQKELIKYQRKDGVQLSATL 656 (953)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~~~~~~---~~~~~~~~~~~~~~dg~~~~~~l 656 (953)
. ..+|| ||+ +++..++...|+++|+++..+ +.++| .+.. ......+.+++++.+|.++++++
T Consensus 286 ~-------~~~~s-dg~-~l~~~s~~~~p~~l~~~d~~~-~~~~l-----~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 350 (582)
T 3o4h_A 286 G-------RVVLW-RGK-LVTSHTSLSTPPRIVSLPSGE-PLLEG-----GLPEDLRRSIAGSRLVWVESFDGSRVPTYV 350 (582)
T ss_dssp E-------EEEEE-TTE-EEEEEEETTEEEEEEEETTCC-EEECC-----CCCHHHHHTEEEEEEEEEECTTSCEEEEEE
T ss_pred E-------EEEec-CCE-EEEEEcCCCCCCeEEEEcCCC-ceEEE-----ecCCccccccCcceEEEEECCCCCEEEEEE
Confidence 1 24677 664 567788888899999998755 54444 2222 44456789999999999999999
Q ss_pred EcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh---h
Q 002209 657 YLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---D 733 (953)
Q Consensus 657 ~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~ 733 (953)
+.|+++.+ +.|+||++||+++... ...| ...+..|+++||+|+.+++++..|+|.++.. .
T Consensus 351 ~~p~~~~~----~~p~vv~~HG~~~~~~---------~~~~----~~~~~~l~~~G~~v~~~d~rG~~~~G~s~~~~~~~ 413 (582)
T 3o4h_A 351 LESGRAPT----PGPTVVLVHGGPFAED---------SDSW----DTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIG 413 (582)
T ss_dssp EEETTSCS----SEEEEEEECSSSSCCC---------CSSC----CHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTT
T ss_pred EcCCCCCC----CCcEEEEECCCccccc---------cccc----CHHHHHHHhCCCEEEEeccCCCCCCchhHHhhhhh
Confidence 99987532 5899999999764321 0112 2456788999999999999888788887543 3
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcc-----cccc
Q 002209 734 RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQ-----NEDR 808 (953)
Q Consensus 734 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~-----~~~~ 808 (953)
.+....++|+.++++++.+++.+| +++|+||||||++++.++.++|++|+++|+.+|+.++........ ....
T Consensus 414 ~~~~~~~~d~~~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (582)
T 3o4h_A 414 DPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQ 491 (582)
T ss_dssp CTTTHHHHHHHHHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEEESCCCCHHHHHHTCCHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEEcCCccCHHHHhhcccchhHHHHHH
Confidence 445677899999999999998777 999999999999999999999999999999999876421100000 0000
Q ss_pred hhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHH
Q 002209 809 TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLW 888 (953)
Q Consensus 809 ~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~ 888 (953)
......+.+...+|+.++.++++|+|++||++|.+|| +.++++++++++..+++++++++|+++|.+...+....+++
T Consensus 492 ~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~v~--~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~ 569 (582)
T 3o4h_A 492 LTGGSREIMRSRSPINHVDRIKEPLALIHPQNASRTP--LKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILL 569 (582)
T ss_dssp HTTTCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSC--HHHHHHHHHHHHHTTCCEEEEEETTCCSSCCBHHHHHHHHH
T ss_pred HcCcCHHHHHhcCHHHHHhcCCCCEEEEecCCCCCcC--HHHHHHHHHHHHhCCCCEEEEEECCCCCCCCChHHHHHHHH
Confidence 1114567788899999999999999999999999999 99999999999999999999999999999876677788999
Q ss_pred HHHHHHHHhccC
Q 002209 889 ETDRWLQKYCVS 900 (953)
Q Consensus 889 ~i~~fl~~~l~~ 900 (953)
.+.+||+++|+.
T Consensus 570 ~i~~fl~~~l~~ 581 (582)
T 3o4h_A 570 PAVFFLATQRER 581 (582)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 999999999863
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-47 Score=462.39 Aligned_cols=584 Identities=12% Similarity=0.095 Sum_probs=405.3
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCc--cccccccceEEecCCeEEEEEecCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI--YLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~--~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
+..| +|||++++|..... +.....||+++..+++.+.|+..... ..+..+..++|||||++|+|+....+.
T Consensus 76 ~~~p--~~dG~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~- 148 (710)
T 2xdw_A 76 YSCH--FKKGKRYFYFYNTG----LQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGS- 148 (710)
T ss_dssp ECCC--EEETTEEEEEEECS----SCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTC-
T ss_pred CCCC--EEECCEEEEEEEcC----CceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCC-
Confidence 4445 49999999988632 33356899999888877655432210 001125689999999999998321100
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l 346 (953)
...+|+++|+ +|+...++.. ..+..++|||||+.|
T Consensus 149 -------------------------------------------~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l 185 (710)
T 2xdw_A 149 -------------------------------------------DWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGM 185 (710)
T ss_dssp -------------------------------------------SCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEE
T ss_pred -------------------------------------------ceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEE
Confidence 1237999999 8877665433 346789999999999
Q ss_pred EEEEecCCcc---ccccCCCCCcceEEEeccCceE--EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002209 347 LISSIHRPYS---FIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 347 ~~~~~~~~~~---~~~~~~~~~~~i~~~d~~g~~~--~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
+|++.+.+.. ..........+|++|++.++.. +.+...+.. ......+.|||||+.|++......
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~----------~~~~~~~~~SpDg~~l~~~~~~~~ 255 (710)
T 2xdw_A 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE----------PKWMGGAELSDDGRYVLLSIREGC 255 (710)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC----------TTCEEEEEECTTSCEEEEEEECSS
T ss_pred EEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCC----------CeEEEEEEEcCCCCEEEEEEEccC
Confidence 9998654310 0001112345799999986542 222222110 012246899999999988743211
Q ss_pred CCCcccccccCCeEEEEecCCCCC------C--CceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCC
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQG------E--GPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV 493 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g------~--~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~ 493 (953)
+....||++++ ++ + ..+.++...... ...|+|||+.|++..+.+..+.+|+.++++++..
T Consensus 256 --------~~~~~l~~~d~---~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~ 323 (710)
T 2xdw_A 256 --------DPVNRLWYCDL---QQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE 323 (710)
T ss_dssp --------SSCCEEEEEEG---GGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred --------CCccEEEEEEC---cccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 11468999997 32 3 456666544333 2469999999999987665456899999987521
Q ss_pred -CcEEeecCCCc-cccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCc-eEEEecc
Q 002209 494 -APRILFDRSSE-DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS-KERIWES 570 (953)
Q Consensus 494 -~~~~~~~~~~~-~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~-~~~l~~~ 570 (953)
..+.++..... .+.+ +.|++++ ++++..... ...+|+++|+.+|+ .+.|...
T Consensus 324 ~~~~~l~~~~~~~~~~~------~~~~~~~-~lv~~~~~~------------------g~~~l~~~~~~~g~~~~~l~~~ 378 (710)
T 2xdw_A 324 SKWKVLVPEHEKDVLEW------VACVRSN-FLVLCYLHD------------------VKNTLQLHDLATGALLKIFPLE 378 (710)
T ss_dssp GGCEEEECCCSSCEEEE------EEEETTT-EEEEEEEET------------------TEEEEEEEETTTCCEEEEECCC
T ss_pred ccceeccCCCCCCeEEE------EEEEcCC-EEEEEEEEC------------------CEEEEEEEECCCCCEEEecCCC
Confidence 12444433221 1211 5677544 455544321 23469999996665 4555443
Q ss_pred CcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCC--eeEEecCCCCCCCcCCCceEEEEEEcCC
Q 002209 571 DKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK--SCQITDFPHPYPQLASLQKELIKYQRKD 648 (953)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~--~~~Lt~~~~~~~~~~~~~~~~~~~~~~d 648 (953)
.+. +. ..++++|++.+++..++..+|..+|++++.+++ .+.+............+..+.+++++.|
T Consensus 379 ~~~-----v~-------~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d 446 (710)
T 2xdw_A 379 VGS-----VV-------GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTVKGIDASDYQTVQIFYPSKD 446 (710)
T ss_dssp SSE-----EE-------EEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECCCTTCCGGGEEEEEEEEECTT
T ss_pred Cce-----EE-------EEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEeeecccCCcCccccEEEEEEEEcCC
Confidence 221 11 135678999999999999999999999999888 6777654322122345678999999999
Q ss_pred CcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEEcCCCCCCCCC
Q 002209 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEG 727 (953)
Q Consensus 649 g~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G 727 (953)
|.+|+++++.|+++... ++.|+||++|||+.....+ .| . .....|++ +||+|+.++++|..++|
T Consensus 447 g~~i~~~~~~p~~~~~~--~~~P~vl~~hGg~~~~~~~---------~~---~-~~~~~l~~~~G~~v~~~d~rG~g~~g 511 (710)
T 2xdw_A 447 GTKIPMFIVHKKGIKLD--GSHPAFLYGYGGFNISITP---------NY---S-VSRLIFVRHMGGVLAVANIRGGGEYG 511 (710)
T ss_dssp SCEEEEEEEEETTCCCS--SCSCEEEECCCCTTCCCCC---------CC---C-HHHHHHHHHHCCEEEEECCTTSSTTH
T ss_pred CCEEEEEEEecCCCCCC--CCccEEEEEcCCCCCcCCC---------cc---c-HHHHHHHHhCCcEEEEEccCCCCCCC
Confidence 99999999999876433 3589999999986432210 11 1 22446778 99999998888777666
Q ss_pred Chhhh---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcC--
Q 002209 728 DEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG-- 802 (953)
Q Consensus 728 ~~~~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~-- 802 (953)
..+.. .......+.|+++++++|++++++|++||+|+|+||||++++.++.++|++|+++|+.+|+.++......
T Consensus 512 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~ 591 (710)
T 2xdw_A 512 ETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTI 591 (710)
T ss_dssp HHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTT
T ss_pred hHHHHhhhhhcCCchHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHhhccccCC
Confidence 65432 2344567899999999999998899999999999999999999999999999999999999885432110
Q ss_pred ---cccccch--hhhhHHHHHhcCcccccC-----CCCC-cEEEEEeCCCCCCCCchHHHHHHHHHHHhC-------CCc
Q 002209 803 ---FQNEDRT--LWEATSTYVEMSPFMSAN-----KLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGH-------GAL 864 (953)
Q Consensus 803 ---~~~~~~~--~~~~~~~~~~~sp~~~~~-----~i~~-P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~-------g~~ 864 (953)
+....+. ..+..+.+..++|+.++. +++. |+||+||++|.+|| +.++.+++++|+.. +.+
T Consensus 592 ~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~pP~Li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~ 669 (710)
T 2xdw_A 592 GHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVV--PLHSLKFIATLQYIVGRSRKQNNP 669 (710)
T ss_dssp GGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSC--THHHHHHHHHHHHHTTTSTTCCSC
T ss_pred ChhHHHhCCCCCCHHHHHHHHHhCcHhhhcccccccCCCCcEEEEEeCCCCccC--hhHHHHHHHHHHhhhccccCCCcC
Confidence 0000011 122344566789999998 7886 99999999999999 99999999999987 899
Q ss_pred EEEEEeCCCCccCCCc-ccHHHHHHHHHHHHHHhccC
Q 002209 865 CRLVILPFESHGYAAR-ESIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 865 ~~~~~~~~~~H~~~~~-~~~~~~~~~i~~fl~~~l~~ 900 (953)
+++++++++||++... .........+++||.++++.
T Consensus 670 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 706 (710)
T 2xdw_A 670 LLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNI 706 (710)
T ss_dssp EEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999998643 23467888999999999864
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=458.05 Aligned_cols=580 Identities=14% Similarity=0.095 Sum_probs=403.6
Q ss_pred eEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCc--cccccccceEEecCCeEEEEEecCCCCCCCC
Q 002209 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI--YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (953)
Q Consensus 194 ~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~ 271 (953)
+..+|||++|+|..... +.....||+++..+++.+.|+..... .....+..++|||||++|+|+....+.
T Consensus 73 ~~p~~dG~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~---- 144 (695)
T 2bkl_A 73 STPSRRNGRFFYVRTHK----DKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAA---- 144 (695)
T ss_dssp CCCEEETTEEEEEEECT----TCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTC----
T ss_pred CCCEEECCEEEEEEEcC----CCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCC----
Confidence 34459999999988633 33467899999988888888753320 011126689999999999998321110
Q ss_pred CCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee---EeCCCCcccccccCCCCcEEE
Q 002209 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK---EIGPPAVYTSLDPSPDEKYIL 347 (953)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~---~l~~~~~~~~~~~SpDG~~l~ 347 (953)
....|+++|+ +|+.. .+.. .....++|||||+.|+
T Consensus 145 ----------------------------------------~~~~i~v~dl~tg~~~~~~~~~~-~~~~~~~wspDg~~l~ 183 (695)
T 2bkl_A 145 ----------------------------------------DEAVLHVIDVDSGEWSKVDVIEG-GKYATPKWTPDSKGFY 183 (695)
T ss_dssp ----------------------------------------SCCEEEEEETTTCCBCSSCCBSC-CTTCCCEECTTSSEEE
T ss_pred ----------------------------------------ceEEEEEEECCCCCCcCCcccCc-ccccceEEecCCCEEE
Confidence 1257999999 77654 1211 2237899999999999
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceE--EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~--~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
|++.+.+............+|++|++.++.. +.+...+.. ......+.|||||+.|++.....
T Consensus 184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~----------~~~~~~~~~SpDG~~l~~~~~~~----- 248 (695)
T 2bkl_A 184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD----------PTTFLQSDLSRDGKYLFVYILRG----- 248 (695)
T ss_dssp EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC----------TTCEEEEEECTTSCCEEEEEEET-----
T ss_pred EEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC----------CEEEEEEEECCCCCEEEEEEeCC-----
Confidence 9986542100000011234799999986542 333332111 01234689999999998873221
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCC-CcEEeecCC-C
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV-APRILFDRS-S 503 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~-~~~~~~~~~-~ 503 (953)
.....||+++. .+++.+.|+........+.| +||+ |++.++.+..+.+|+.++++++.. ..+.++... .
T Consensus 249 ----~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 319 (695)
T 2bkl_A 249 ----WSENDVYWKRP---GEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSS 319 (695)
T ss_dssp ----TTEEEEEEECT---TCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSS
T ss_pred ----CCceEEEEEcC---CCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCC
Confidence 02447888874 45677777766555555666 7888 888776554456899999987521 124444322 1
Q ss_pred ccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeec
Q 002209 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583 (953)
Q Consensus 504 ~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 583 (953)
..+.. ++|+ +..+++..... ...+|++++++++..+.+...... ..
T Consensus 320 ~~l~~------~~~~--~~~lv~~~~~d------------------g~~~l~~~~~~g~~~~~l~~~~~~-----~v--- 365 (695)
T 2bkl_A 320 ASLLS------VSIV--GGHLSLEYLKD------------------ATSEVRVATLKGKPVRTVQLPGVG-----AA--- 365 (695)
T ss_dssp CEEEE------EEEE--TTEEEEEEEET------------------TEEEEEEEETTCCEEEECCCSSSS-----EE---
T ss_pred CeEEE------EEEE--CCEEEEEEEEC------------------CEEEEEEEeCCCCeeEEecCCCCe-----EE---
Confidence 11111 4455 34455444221 234689999876655555432211 01
Q ss_pred cCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEecCCCCCCCcCCCceEEEEEEcCCCcEEEEEEEcCCCCC
Q 002209 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYD 663 (953)
Q Consensus 584 ~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~ 663 (953)
...++++|++.+++..++..+|..+|++++.+++.+.|+..+.. .....+..+.+++++.||.+|+++++.|++++
T Consensus 366 ---~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~dg~~i~~~~~~p~~~~ 441 (695)
T 2bkl_A 366 ---SNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAKVDVP-MNPEQYQVEQVFYASKDGTKVPMFVVHRKDLK 441 (695)
T ss_dssp ---CCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEECCCS-SCGGGEEEEEEEEECTTSCEEEEEEEEETTCC
T ss_pred ---EEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecCCCC-CCHHHCeEEEEEEECCCCCEEEEEEEECCCCC
Confidence 12467889999999999999999999999999998888865433 22344678999999999999999999998764
Q ss_pred CCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh---hhhHHHHH
Q 002209 664 PSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLV 740 (953)
Q Consensus 664 ~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~ 740 (953)
.. ++.|+||++|||+...... .|. .....|+++||+|+.++++|..++|..+.. .......+
T Consensus 442 ~~--~~~p~vl~~hGg~~~~~~~---------~~~----~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~ 506 (695)
T 2bkl_A 442 RD--GNAPTLLYGYGGFNVNMEA---------NFR----SSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVF 506 (695)
T ss_dssp CS--SCCCEEEECCCCTTCCCCC---------CCC----GGGHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHH
T ss_pred CC--CCccEEEEECCCCccccCC---------CcC----HHHHHHHhCCCEEEEEecCCCCCcCHHHHHhhHhhcCCCcH
Confidence 43 3599999999986443211 121 123468899999999999887778776432 23456778
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCc-C----cccccchh--hhh
Q 002209 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF-G----FQNEDRTL--WEA 813 (953)
Q Consensus 741 ~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~-~----~~~~~~~~--~~~ 813 (953)
+|+++++++|++++++|++||+|+|+||||++++.++.++|++|+++|+.+|+.++..... . +....+.+ .+.
T Consensus 507 ~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~ 586 (695)
T 2bkl_A 507 DDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSGRTWIPEYGTAEKPED 586 (695)
T ss_dssp HHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHCCTTSHHH
T ss_pred HHHHHHHHHHHHcCCCCcccEEEEEECHHHHHHHHHHHhCCcceEEEEEcCCccchhhccccCCCcchHHHhCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999988543211 0 00000111 122
Q ss_pred HHHHHhcCcccccCCCC--CcEEEEEeCCCCCCCCchHHHHHHHHHHHh---CCCcEEEEEeCCCCccCCC-cccHHHHH
Q 002209 814 TSTYVEMSPFMSANKLK--KPILLVHGEEDNNSGTLTMQSDRFFNALKG---HGALCRLVILPFESHGYAA-RESIMHVL 887 (953)
Q Consensus 814 ~~~~~~~sp~~~~~~i~--~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~---~g~~~~~~~~~~~~H~~~~-~~~~~~~~ 887 (953)
.+.+..++|+.++.+++ +|+||+||++|.+|| +.++.+++++|+. .+.++++++++++||++.. .+......
T Consensus 587 ~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~ 664 (695)
T 2bkl_A 587 FKTLHAYSPYHHVRPDVRYPALLMMAADHDDRVD--PMHARKFVAAVQNSPGNPATALLRIEANAGHGGADQVAKAIESS 664 (695)
T ss_dssp HHHHHHHCGGGCCCSSCCCCEEEEEEETTCSSSC--THHHHHHHHHHHTSTTCCSCEEEEEETTCBTTBCSCHHHHHHHH
T ss_pred HHHHHhcChHhhhhhcCCCCCEEEEeeCCCCCCC--hHHHHHHHHHHHhhccCCCCEEEEEeCCCCcCCCCCHHHHHHHH
Confidence 34566789999998876 699999999999999 9999999999998 6789999999999999753 34456778
Q ss_pred HHHHHHHHHhccCC
Q 002209 888 WETDRWLQKYCVSN 901 (953)
Q Consensus 888 ~~i~~fl~~~l~~~ 901 (953)
..+++||.++|+..
T Consensus 665 ~~~~~fl~~~l~~~ 678 (695)
T 2bkl_A 665 VDLYSFLFQVLDVQ 678 (695)
T ss_dssp HHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHcCCC
Confidence 88999999998643
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-46 Score=450.05 Aligned_cols=578 Identities=13% Similarity=0.088 Sum_probs=401.2
Q ss_pred EeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCC--ccccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002209 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD--IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (953)
Q Consensus 195 ~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~--~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 272 (953)
..+++|.+++|..... ......+|+.+.++++.. |..... ......+..++|||||++|+|+....+.
T Consensus 83 ~p~~~g~~~y~~~~~~----~~~~~~~~r~~~~~~~~v-llD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~----- 152 (693)
T 3iuj_A 83 APFREGRYHYFFKNDG----LQNQNVLWRQQEGKPAEV-FLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGS----- 152 (693)
T ss_dssp CCEEETTEEEEEEECS----SCSSCEEEEECTTSCCEE-EECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSC-----
T ss_pred CCEEECCEEEEEEEcC----CCceeEEEEeCCCCCcEE-EEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCC-----
Confidence 3357899999877522 334457777665554432 322111 0011135678999999999998321110
Q ss_pred CCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCc-ccccccCCCCcEEEEEE
Q 002209 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAV-YTSLDPSPDEKYILISS 350 (953)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~-~~~~~~SpDG~~l~~~~ 350 (953)
....|+++|+ +|+......... ..+++|| ||+.|+|++
T Consensus 153 ---------------------------------------~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~ 192 (693)
T 3iuj_A 153 ---------------------------------------DWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSS 192 (693)
T ss_dssp ---------------------------------------CEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEE
T ss_pred ---------------------------------------ceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEE
Confidence 2257999999 887655533322 5789999 999999999
Q ss_pred ecCCccccccCCCCCcceEEEeccCce--EEEeccCCC-cccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 351 IHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPL-AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~~d~~g~~--~~~l~~~~~-~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
.+.+..........+.+|++|++.+.. .+.+...+. .. ....++.|||||+.|++.....
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~----------~~~~~~~~SpDg~~l~~~~~~~------- 255 (693)
T 3iuj_A 193 YDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH----------HRYVGATVTEDDRFLLISAANS------- 255 (693)
T ss_dssp SSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC----------CSEEEEEECTTSCEEEEEEESS-------
T ss_pred ecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC----------eEEEEEEEcCCCCEEEEEEccC-------
Confidence 764311111111234589999987543 234443321 10 1224688999999988873221
Q ss_pred ccccCCeEEEEecCCCCCC--CceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCC-CcEEeecCCCc
Q 002209 428 EVTPRDIIYTQQAEPVQGE--GPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV-APRILFDRSSE 504 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~--~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~ 504 (953)
.....+|++++ +++ +.+.++........+ |++||++|+|..+.+..+.+|+.++++++.. ..+.++.....
T Consensus 256 --~~~~~i~~~d~---~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 329 (693)
T 3iuj_A 256 --TSGNRLYVKDL---SQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ 329 (693)
T ss_dssp --SSCCEEEEEET---TSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred --CCCcEEEEEEC---CCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC
Confidence 12358999996 333 566676554433333 8999999999988765557999999988632 12344432221
Q ss_pred cccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeecc
Q 002209 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMS 584 (953)
Q Consensus 505 ~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 584 (953)
. +.|+++|++|++..... ....|+++|++++..+.|...... .+.
T Consensus 330 ~---------~~~s~~g~~lv~~~~~~------------------g~~~l~~~d~~g~~~~~l~~p~~~----~~~---- 374 (693)
T 3iuj_A 330 V---------LTVHSGSGYLFAEYMVD------------------ATARVEQFDYEGKRVREVALPGLG----SVS---- 374 (693)
T ss_dssp C---------EEEEEETTEEEEEEEET------------------TEEEEEEECTTSCEEEEECCSSSS----EEE----
T ss_pred E---------EEEEEECCEEEEEEEEC------------------CeeEEEEEECCCCeeEEeecCCCc----eEE----
Confidence 1 36999999999887532 234699999998777766543321 011
Q ss_pred CCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEecCCCCCCCcCCCceEEEEEEcCCCcEEEEEEEcCCCCCC
Q 002209 585 DQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDP 664 (953)
Q Consensus 585 ~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~ 664 (953)
..++++|++.+++..++..+|..+|.+++.+++.+.|+..+..+ ....+..+.+++++.||.+|++++++|+++..
T Consensus 375 ---~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~~~~~~-~~~~~~~~~~~~~~~dg~~i~~~l~~p~~~~~ 450 (693)
T 3iuj_A 375 ---GFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRASAAPF-KPEDYVSEQRFYQSKDGTRVPLIISYRKGLKL 450 (693)
T ss_dssp ---ECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEECCCSSC-CGGGEEEEEEEEECTTSCEEEEEEEEESSCCC
T ss_pred ---eeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEeCCCCc-ChhhCeeEEEEEecCCCcEEEEEEEecCCCCC
Confidence 13567899999999999999999999999999988888765433 23446789999999999999999999987644
Q ss_pred CCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh---hhhHHHHHH
Q 002209 665 SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVA 741 (953)
Q Consensus 665 ~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~ 741 (953)
. ++.|+||++|||+..... ..| ......|+++||+|+.++++|..++|..+.. .......++
T Consensus 451 ~--~~~P~ll~~hGg~~~~~~---------~~~----~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~ 515 (693)
T 3iuj_A 451 D--GSNPTILYGYGGFDVSLT---------PSF----SVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFD 515 (693)
T ss_dssp S--SCCCEEEECCCCTTCCCC---------CCC----CHHHHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHH
T ss_pred C--CCccEEEEECCCCCcCCC---------Ccc----CHHHHHHHHCCCEEEEEeCCCCCccCHHHHHhhhhhcCCCcHH
Confidence 3 359999999998643211 112 1335678999999999999888888876543 234556789
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcC-----cccccchhh--hh-
Q 002209 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG-----FQNEDRTLW--EA- 813 (953)
Q Consensus 742 D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~-----~~~~~~~~~--~~- 813 (953)
|+++++++|.+++.+|++||+|+|+|+||++++.++.++|++|+|+|+.+|++|+...... +..+.+.+. +.
T Consensus 516 D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~p~~~~~~ 595 (693)
T 3iuj_A 516 DFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAYDYGTSADSEAM 595 (693)
T ss_dssp HHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCCTTTGGGSGGGGGCHHHHCCTTSCHHH
T ss_pred HHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHhhCccceeEEEecCCcchhhhhccCCCchhHHHHcCCccCHHHH
Confidence 9999999999999999999999999999999999999999999999999999886432110 000011111 11
Q ss_pred HHHHHhcCcccccCC-CCCc-EEEEEeCCCCCCCCchHHHHHHHHHHHhC---CCcEEEEEeCCCCccCCCc-ccHHHHH
Q 002209 814 TSTYVEMSPFMSANK-LKKP-ILLVHGEEDNNSGTLTMQSDRFFNALKGH---GALCRLVILPFESHGYAAR-ESIMHVL 887 (953)
Q Consensus 814 ~~~~~~~sp~~~~~~-i~~P-~Li~~G~~D~~v~~~~~~~~~~~~~l~~~---g~~~~~~~~~~~~H~~~~~-~~~~~~~ 887 (953)
.+.+..++|+.++.+ ++.| +||+||++|.+|| +.++.+++++|+.. ++++++++++++||++... +......
T Consensus 596 ~~~~~~~sp~~~~~~~~~~Pp~Li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~ 673 (693)
T 3iuj_A 596 FDYLKGYSPLHNVRPGVSYPSTMVTTADHDDRVV--PAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQS 673 (693)
T ss_dssp HHHHHHHCHHHHCCTTCCCCEEEEEEESSCSSSC--THHHHHHHHHHHHHCCSSSCEEEEEEC-------CHHHHHHHHH
T ss_pred HHHHHhcCHHHhhcccCCCCceeEEecCCCCCCC--hhHHHHHHHHHHhhCCCCCCEEEEEeCCCCCCCcccHHHHHHHH
Confidence 334667899999999 8987 9999999999999 99999999999987 5899999999999998653 4566788
Q ss_pred HHHHHHHHHhccCC
Q 002209 888 WETDRWLQKYCVSN 901 (953)
Q Consensus 888 ~~i~~fl~~~l~~~ 901 (953)
..+.+||.++|+..
T Consensus 674 ~~~~~fl~~~l~~~ 687 (693)
T 3iuj_A 674 ADIYAFTLYEMGYR 687 (693)
T ss_dssp HHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCC
Confidence 89999999999754
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=451.74 Aligned_cols=581 Identities=14% Similarity=0.092 Sum_probs=392.6
Q ss_pred eEeccCCCeEEEEEeeccccCCCCcceEEEEECC---CCceeecccCCCc--cccccccceEEecCCeEEEEEecCCCCC
Q 002209 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD---TGKARPLFQSPDI--YLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 194 ~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~---~g~~~~lt~~~~~--~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
+..+|||++++|..... +.....||+++.. +++.+.|+..... ..+..+..++|||||++|+|+....+.
T Consensus 112 ~~p~pdG~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~- 186 (741)
T 1yr2_A 112 GLPQRRGASVFYSWNSG----LMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGS- 186 (741)
T ss_dssp CCCEEETTEEEEEEECS----SCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTC-
T ss_pred CCCEEECCEEEEEEEcC----CCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCC-
Confidence 34459999999988633 3336899999987 7777765432210 001125689999999999998321100
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l 346 (953)
...+|+++|+ +|+....... ..+..++|||| +.|
T Consensus 187 -------------------------------------------e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l 222 (741)
T 1yr2_A 187 -------------------------------------------DWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DAL 222 (741)
T ss_dssp -------------------------------------------SEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEE
T ss_pred -------------------------------------------ceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEE
Confidence 1247999999 8876554322 33468999999 999
Q ss_pred EEEEecCCcc-ccccCCCCCcceEEEeccCceE--EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 347 LISSIHRPYS-FIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 347 ~~~~~~~~~~-~~~~~~~~~~~i~~~d~~g~~~--~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
+|++.+.+.. ..........+|++|++.++.. +.+...+.. .....++.|||||+.|++......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~----------~~~~~~~~~SpDG~~l~~~~~~~~-- 290 (741)
T 1yr2_A 223 LYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL----------PKRGHGASVSSDGRWVVITSSEGT-- 290 (741)
T ss_dssp EEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC----------TTCEEEEEECTTSCEEEEEEECTT--
T ss_pred EEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC----------CeEEEEEEECCCCCEEEEEEEccC--
Confidence 9998654310 0001122345799999875432 233222110 012346899999999998843211
Q ss_pred CcccccccCCeEEEEecCCCCCC--C-ceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeec
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGE--G-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD 500 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~--~-~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 500 (953)
+....||++|+ +++ + .+.|.........+ ++|||+.|++..+.+..+.+||.++++++..+.+.++.
T Consensus 291 ------~~~~~l~~~d~---~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~ 360 (741)
T 1yr2_A 291 ------DPVNTVHVARV---TNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP 360 (741)
T ss_dssp ------CSCCEEEEEEE---ETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC
T ss_pred ------CCcceEEEEEC---CCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec
Confidence 13558999996 444 5 66776554333334 56999999999887655678999998874112233433
Q ss_pred CCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeE
Q 002209 501 RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTV 580 (953)
Q Consensus 501 ~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~ 580 (953)
.....+.+ ++|+ +..+++..... ...+|++++++++..+.|...... .+.
T Consensus 361 ~~~~~l~~------~~~~--~~~lv~~~~~d------------------g~~~l~~~~~~g~~~~~l~~~~~~----~v~ 410 (741)
T 1yr2_A 361 ESKDNLES------VGIA--GNRLFASYIHD------------------AKSQVLAFDLDGKPAGAVSLPGIG----SAS 410 (741)
T ss_dssp CCSSEEEE------EEEE--BTEEEEEEEET------------------TEEEEEEEETTSCEEEECBCSSSC----EEE
T ss_pred CCCCeEEE------EEEE--CCEEEEEEEEC------------------CEEEEEEEeCCCCceeeccCCCCe----EEE
Confidence 22111111 3343 55565554321 244699999876666666532211 011
Q ss_pred eeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEecCCCCCCCcCCCceEEEEEEcCCCcEEEEEEEcCC
Q 002209 581 ALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPP 660 (953)
Q Consensus 581 ~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~l~~P~ 660 (953)
..++++|++.++|..++..+|..+|++++.+++.+.|+.... ......+..+.+++++.||.+|+++++.|+
T Consensus 411 -------~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~~~~~-~~~~~~~~~~~~~~~~~dg~~i~~~~~~p~ 482 (741)
T 1yr2_A 411 -------GLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWEPVHL-TFDPADFRVEQVFYPSKDGTKVPMFIVRRK 482 (741)
T ss_dssp -------EEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECSCCCC-SSCGGGEEEEEEEEECTTSCEEEEEEEEET
T ss_pred -------EeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecCCC-CCChhHCEEEEEEEEcCCCCEEEEEEEecC
Confidence 135788999999999999999999999999988777765221 123345678999999999999999999998
Q ss_pred CCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh---hhhHH
Q 002209 661 GYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVE 737 (953)
Q Consensus 661 ~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~~~~ 737 (953)
++ .++.|+||++|||+...... .| ......|+++||+|+.++++|..++|..+.. ..+..
T Consensus 483 ~~----~~~~p~vl~~hGg~~~~~~~---------~~----~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~ 545 (741)
T 1yr2_A 483 DA----KGPLPTLLYGYGGFNVALTP---------WF----SAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRRDKKQ 545 (741)
T ss_dssp TC----CSCCCEEEECCCCTTCCCCC---------CC----CHHHHHHHTTTCEEEEECCTTSSTTHHHHHHTTSGGGTH
T ss_pred CC----CCCCcEEEEECCCCCccCCC---------Cc----CHHHHHHHHCCcEEEEEecCCCCCCCHHHHHhhhhhcCC
Confidence 75 23589999999986432210 11 1234578899999999888877777665432 22345
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCc-C----cccccchh--
Q 002209 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF-G----FQNEDRTL-- 810 (953)
Q Consensus 738 ~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~-~----~~~~~~~~-- 810 (953)
..++|+++++++|.+++++|++||+|+|+||||++++.++.++|++|+++|+.+|+.++..... . +....+.+
T Consensus 546 ~~~~D~~~~~~~l~~~~~~~~~ri~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~ 625 (741)
T 1yr2_A 546 NVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTAGRYWVDDYGYPEK 625 (741)
T ss_dssp HHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSGGGSTTGGGGHHHHCCTTS
T ss_pred CcHHHHHHHHHHHHHcCCCChHHEEEEEECHHHHHHHHHHHhCchhheEEEecCCccccccccCCCCCchhHHHcCCCCC
Confidence 6789999999999999889999999999999999999999999999999999999987543211 0 00001111
Q ss_pred hhhHHHHHhcCcccccCC-CCC-cEEEEEeCCCCCCCCchHHHHHHHHHHHh---CCCcEEEEEeCCCCccCCCc-ccHH
Q 002209 811 WEATSTYVEMSPFMSANK-LKK-PILLVHGEEDNNSGTLTMQSDRFFNALKG---HGALCRLVILPFESHGYAAR-ESIM 884 (953)
Q Consensus 811 ~~~~~~~~~~sp~~~~~~-i~~-P~Li~~G~~D~~v~~~~~~~~~~~~~l~~---~g~~~~~~~~~~~~H~~~~~-~~~~ 884 (953)
.+..+.+..++|+.++.+ ++. |+||+||++|.+|| +.++.+++++|+. .+.++++++++++||++... ....
T Consensus 626 ~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~--~~~~~~~~~~l~~~~~~g~~~~l~~~~~~gH~~~~~~~~~~ 703 (741)
T 1yr2_A 626 EADWRVLRRYSPYHNVRSGVDYPAILVTTADTDDRVV--PGHSFKYTAALQTAAIGPKPHLIRIETRAGHGSGKPIDKQI 703 (741)
T ss_dssp HHHHHHHHTTCGGGCCCTTSCCCEEEEEECSCCSSSC--THHHHHHHHHHHHSCCCSSCEEEEEC---------CHHHHH
T ss_pred HHHHHHHHHcCchhhhhccCCCCCEEEEeeCCCCCCC--hhHHHHHHHHHhhhhcCCCCEEEEEeCCCCcCCCCCHHHHH
Confidence 122345577899999987 884 99999999999999 9999999999999 88999999999999997542 3345
Q ss_pred HHHHHHHHHHHHhccCCC
Q 002209 885 HVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 885 ~~~~~i~~fl~~~l~~~~ 902 (953)
.....+++||.++++...
T Consensus 704 ~~~~~~~~fl~~~l~~~~ 721 (741)
T 1yr2_A 704 EETADVQAFLAHFTGLTP 721 (741)
T ss_dssp HHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 788899999999996543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=428.03 Aligned_cols=574 Identities=13% Similarity=0.058 Sum_probs=388.5
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEEC---CCC--ceeecccCCC---ccccccccceEEe-cCCeEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV---DTG--KARPLFQSPD---IYLNAIFDNFVWV-NNSTLLVC 260 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~---~~g--~~~~lt~~~~---~~~~~~~~~~~ws-pDg~~l~~ 260 (953)
..+.|. ++|++++|.+... +.....+|+.+. +++ ..+.+..... ..-...+..+.|| |||++|+|
T Consensus 118 ~~~~p~--~~g~~~yy~~~~~----g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy 191 (751)
T 2xe4_A 118 DMSAPY--VYGKYRYYTREVK----GKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAF 191 (751)
T ss_dssp EECCCE--EETTEEEEEEECT----TCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEE
T ss_pred cCCCCe--EECCEEEEEEECC----CCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEE
Confidence 445554 7899999987532 333567888886 554 3333332210 0000014578999 99999999
Q ss_pred EecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC--Ccccc
Q 002209 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP--AVYTS 336 (953)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~--~~~~~ 336 (953)
+....+. ...+||++|+ +| +. +... ....+
T Consensus 192 ~~~~~G~--------------------------------------------~~~~l~v~dl~~g~~~--l~~~~~~~~~~ 225 (751)
T 2xe4_A 192 SVDMSGN--------------------------------------------EVYTIEFKRISDPSQT--IADKVSGTNGE 225 (751)
T ss_dssp EEESSSS--------------------------------------------SCEEEEEEETTCTTCC--CCCCEEEECSC
T ss_pred EEeCCCC--------------------------------------------ceEEEEEEECCCCCEe--CCccccCceee
Confidence 8321100 1246999999 77 52 2222 33568
Q ss_pred cccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE--EEeccCCCcccCCccccccccCccceeeccCCCCce
Q 002209 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (953)
Q Consensus 337 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~--~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~ 414 (953)
++|||||+.|+|++.+.. ....+|+++++.++.. +.+...+.. ....++.|||||+.|+
T Consensus 226 ~~WspDg~~l~y~~~d~~--------~~~~~v~~~~lgt~~~~~~lv~~~~~~-----------~~~~~~~~SpDg~~l~ 286 (751)
T 2xe4_A 226 IVWGPDHTSLFYVTKDET--------LRENKVWRHVMGKLQSEDVCLYEEHNP-----------LFSAFMYKAADTNTLC 286 (751)
T ss_dssp CEECSSTTEEEEEEECTT--------CCEEEEEEEETTSCGGGCEEEEECCCT-----------TCEEEEEECTTSSEEE
T ss_pred EEEecCCCEEEEEEECCC--------CCCCEEEEEECCCCchhcEEEEecCCC-----------ceEEEEEECCCCCEEE
Confidence 999999999999985431 1123799999986532 233221100 1123578999999999
Q ss_pred EEEEeccCCCcccccccCCeEEEEecCCCCCC--Cc--eEEeecccccCCeeeccC---CceEEEEEecc-cCceEEEEE
Q 002209 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE--GP--EILHKLDLRYGGISWCDD---SLALVYESWYK-TRRTRTWVI 486 (953)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~--~~--~~l~~~~~~~~~~~~SpD---g~~l~~~~~~~-~~~~~l~~~ 486 (953)
|.... .....||++++ +++ +. +.++... ..+.|++| |+.|+|.++.+ ..+.+||.+
T Consensus 287 ~~~~~----------~~~~~l~~~d~---~~~~~~~~~~~l~~~~---~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~ 350 (751)
T 2xe4_A 287 IGSQS----------PETAEVHLLDL---RKGNAHNTLEIVRPRE---KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIA 350 (751)
T ss_dssp EEEEC----------SSCEEEEEEES---SSCTTCCCEEESSCCC---TTCCEEEEEETTTEEEEEECTTTCTTCEEEEE
T ss_pred EEecC----------CCCceEEEEEC---CCCCCCceeEEeecCC---CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEE
Confidence 87432 12458999996 333 34 5554332 34567776 99999988875 456799999
Q ss_pred cCCCCCCCcE-EeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEEC------
Q 002209 487 SPGSKDVAPR-ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDI------ 559 (953)
Q Consensus 487 d~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~------ 559 (953)
+++++..-.. ++.......+ ..+++++++|++..... ...+|+++|+
T Consensus 351 d~~~~~~~~~~li~~~~~~~l--------~~~~~~~~~lv~~~~~~------------------g~~~l~~~dl~~~~~~ 404 (751)
T 2xe4_A 351 PRGQPSDWSHVLVDHSEDVFM--------ESIAVRSNYLVVAGRRA------------------GLTRIWTMMADSQDGV 404 (751)
T ss_dssp ETTSTTCCCCEEECCCSSEEE--------EEEEECSSEEEEEEEET------------------TEEEEEEEECCTTTSC
T ss_pred cCCCcccceeeEECCCCCcEE--------EEEEEECCEEEEEEEeC------------------CEEEEEEEeccccccc
Confidence 9875311122 3332211111 23566677887776432 2456899996
Q ss_pred -CCCc-eEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEecCCCC-CCCcCC
Q 002209 560 -NTGS-KERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHP-YPQLAS 636 (953)
Q Consensus 560 -~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~~~-~~~~~~ 636 (953)
++++ .++|.-.... + ...+ . ....++++++.+++..++..+|+.+|.+++.+++.+.|+..+.. ......
T Consensus 405 ~~~g~~~~~l~l~~~~-~---~~~~-~--~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~~~~~~~~~~~~~ 477 (751)
T 2xe4_A 405 FKAGTGLREVVMEEPI-F---TVHL-V--ESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVKVREVGGGFDAAN 477 (751)
T ss_dssp CCTTTCCEECCCCCSS-C---EEEE-C--GGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEEECCCCTTCCGGG
T ss_pred ccCCccceEECCCCce-e---EEEe-c--cCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEeccccccCCCccc
Confidence 5666 6666432211 0 1111 0 00011567889999999999999999999999998888865432 122234
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
+..+.+++++.||.+|+++++.|+++++. +++|+||++|||+...... .|. ...+.|+++||+|+
T Consensus 478 ~~~~~~~~~s~dG~~i~~~l~~p~~~~~~--~~~P~vl~~HGg~~~~~~~---------~~~----~~~~~l~~~G~~v~ 542 (751)
T 2xe4_A 478 YKVERRFATAPDQTKIPLSVVYHKDLDMS--QPQPCMLYGYGSYGLSMDP---------QFS----IQHLPYCDRGMIFA 542 (751)
T ss_dssp EEEEEEEEECTTCCEEEEEEEEETTSCTT--SCCCEEEECCCCTTCCCCC---------CCC----GGGHHHHTTTCEEE
T ss_pred eEEEEEEEECCCCcEEEEEEEcCCCCCCC--CCccEEEEECCCCCcCCCC---------cch----HHHHHHHhCCcEEE
Confidence 56899999999999999999999876433 3589999999986432211 121 12457889999999
Q ss_pred EcCCCCCCCCCChhhh----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEccc
Q 002209 717 GGPTTPIIGEGDEEAN----DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~----~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (953)
.++++|..++|..+.. .......++|+++++++|.+++++|++||+|+|+|+||+++++++.++|++|+|+|+.+|
T Consensus 543 ~~d~RG~g~~G~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~a~~~p~~~~a~v~~~~ 622 (751)
T 2xe4_A 543 IAHIRGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVP 622 (751)
T ss_dssp EECCTTSCTTCTHHHHTTSSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESC
T ss_pred EEeeCCCCCcCcchhhccccccccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHHHHHHHHhCchheeEEEEeCC
Confidence 9999988888876543 233457899999999999999989999999999999999999999999999999999999
Q ss_pred CCCCCCC------CcC--cccccchh--hhhHHHHHhcCcccccCCCCCc-EEEEEeCCCCCCCCchHHHHHHHHHHHhC
Q 002209 793 AYNRTLT------PFG--FQNEDRTL--WEATSTYVEMSPFMSANKLKKP-ILLVHGEEDNNSGTLTMQSDRFFNALKGH 861 (953)
Q Consensus 793 ~~d~~~~------~~~--~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~P-~Li~~G~~D~~v~~~~~~~~~~~~~l~~~ 861 (953)
+.|+... ++. .....+.+ .+..+.+..++|+.++.+++.| +||+||++|.+|| +.++.+++++|+..
T Consensus 623 ~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~Pp~Lii~G~~D~~vp--~~~~~~~~~~L~~~ 700 (751)
T 2xe4_A 623 FVDVMTTMCDPSIPLTTGEWEEWGNPNEYKYYDYMLSYSPMDNVRAQEYPNIMVQCGLHDPRVA--YWEPAKWVSKLREC 700 (751)
T ss_dssp CCCHHHHHTCTTSTTHHHHTTTTCCTTSHHHHHHHHHHCTGGGCCSSCCCEEEEEEETTCSSSC--THHHHHHHHHHHHH
T ss_pred cchHHhhhcccCcccchhhHHHcCCCCCHHHHHHHHhcChhhhhccCCCCceeEEeeCCCCCCC--HHHHHHHHHHHHhc
Confidence 8774211 100 00011111 1112345678999999999997 9999999999999 99999999999987
Q ss_pred C---CcEEEEEeCCCCccCCCcc-cHHHHHHHHHHHHHHhccC
Q 002209 862 G---ALCRLVILPFESHGYAARE-SIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 862 g---~~~~~~~~~~~~H~~~~~~-~~~~~~~~i~~fl~~~l~~ 900 (953)
+ ..+.+.+++++||++.... ........+.+||.++|+.
T Consensus 701 ~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~Fl~~~l~~ 743 (751)
T 2xe4_A 701 KTDNNEILLNIDMESGHFSAKDRYKFWKESAIQQAFVCKHLKS 743 (751)
T ss_dssp CCSCCCEEEEEETTCCSSCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCceEEEEECCCCCCCCcCChhHHHHHHHHHHHHHHHHhCC
Confidence 4 4566777899999985332 3445667899999999864
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-35 Score=345.23 Aligned_cols=321 Identities=13% Similarity=0.081 Sum_probs=248.5
Q ss_pred CCeEEEEECCCCc--eEE-EeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEecC
Q 002209 551 IPFLDLFDINTGS--KER-IWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDF 627 (953)
Q Consensus 551 ~~~L~~~d~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~ 627 (953)
...|+++|+.+|+ .+. +.-.... .... .+.++++..+++..++..+|+.+|.+++. ++.++|+..
T Consensus 371 ~~~l~~~~~~~g~~~~~~~i~lp~~~-----~~~~------~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~~l~~~ 438 (711)
T 4hvt_A 371 VAKVVTFTLENEQWTKPVVLKLPYQN-----AIFG------MSSYEEEEEALITIENSIVPPTIYLWVKT-HELKIIRKA 438 (711)
T ss_dssp EEEEEEECEETTEECCCEEECCCSTT-----CEEE------EECCTTCSCEEEEEECSSSCCEEEEECTT-SCEEEEECC
T ss_pred EEEEEEEECCCCceEEEeccCCCCCe-----EEEE------EeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEEEEecC
Confidence 3468899987774 344 3222111 0111 23457788999999999999999999987 888888877
Q ss_pred CCCCCCcCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHH
Q 002209 628 PHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL 707 (953)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (953)
+..+. ...+.++.+++++.||.+|++++++|+++++. +++|+||++|||+...... .| .....+.
T Consensus 439 ~~~~~-~~~~~~e~v~~~s~DG~~i~~~l~~P~~~~~~--~~~P~vl~~HGG~~~~~~~---------~~---~~~~~q~ 503 (711)
T 4hvt_A 439 LYSFD-SENYVLEQKEATSFDGVKIPYFLVYKKGIKFD--GKNPTLLEAYGGFQVINAP---------YF---SRIKNEV 503 (711)
T ss_dssp SSCCC-GGGEEEEEEEEECTTSCEEEEEEEEETTCCCS--SCCCEEEECCCCTTCCCCC---------CC---CHHHHHH
T ss_pred CcccC-cccCeeEEEEEECCCCeEEEEEEEecCCCCCC--CCccEEEEECCCCCCCCCC---------cc---cHHHHHH
Confidence 54433 23457899999999999999999999986543 3599999999986543211 11 1222347
Q ss_pred HHHcCcEEEEcCCCCCCCCCChhhh---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcc
Q 002209 708 WLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (953)
Q Consensus 708 la~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 784 (953)
|+++||+|+.++++|..|+|..+.. ..+....++|+++++++|.+++.+|++||+|+|+|+||+++++++.++|++|
T Consensus 504 la~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~~D~~aav~~L~~~~~~d~~rI~i~G~S~GG~la~~~a~~~pd~f 583 (711)
T 4hvt_A 504 WVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPELF 583 (711)
T ss_dssp TGGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGC
T ss_pred HHHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcHHHHHHHHHHHHHcCCCCcccEEEEeECHHHHHHHHHHHhCcCce
Confidence 8999999999999998888876542 3456788999999999999999999999999999999999999999999999
Q ss_pred cEEEEcccCCCCCCCCcC-----cccccchhh--hhHHHHHhcCcccccCCCCC--cEEEEEeCCCCCCCCchHHHHHHH
Q 002209 785 CCGIARSGAYNRTLTPFG-----FQNEDRTLW--EATSTYVEMSPFMSANKLKK--PILLVHGEEDNNSGTLTMQSDRFF 855 (953)
Q Consensus 785 ~a~v~~~~~~d~~~~~~~-----~~~~~~~~~--~~~~~~~~~sp~~~~~~i~~--P~Li~~G~~D~~v~~~~~~~~~~~ 855 (953)
+|+|+.+|++|+...... +....+.++ +..+.+..+||+.++.++++ |+||+||++|.+|| +.++.+++
T Consensus 584 ~a~V~~~pv~D~~~~~~~~~~~~~~~~~G~p~~~~~~~~l~~~SP~~~v~~i~~~pPvLii~G~~D~~Vp--~~~s~~~~ 661 (711)
T 4hvt_A 584 GAVACEVPILDMIRYKEFGAGHSWVTEYGDPEIPNDLLHIKKYAPLENLSLTQKYPTVLITDSVLDQRVH--PWHGRIFE 661 (711)
T ss_dssp SEEEEESCCCCTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGSCCTTSCCCEEEEEEETTCCSSC--THHHHHHH
T ss_pred EEEEEeCCccchhhhhccccchHHHHHhCCCcCHHHHHHHHHcCHHHHHhhcCCCCCEEEEecCCCCcCC--hHHHHHHH
Confidence 999999999886432110 001111111 23455778899999999987 99999999999999 99999999
Q ss_pred HHH-HhCCCcEEEEEeCCCCccCCCc-ccHHHHHHHHHHHHHHhccC
Q 002209 856 NAL-KGHGALCRLVILPFESHGYAAR-ESIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 856 ~~l-~~~g~~~~~~~~~~~~H~~~~~-~~~~~~~~~i~~fl~~~l~~ 900 (953)
++| +..|++++++++|++||++... .........+.+||.++|+.
T Consensus 662 ~aL~~~~g~pv~l~~~p~~gHg~~~~~~~~~~~~~~i~~FL~~~Lg~ 708 (711)
T 4hvt_A 662 YVLAQNPNTKTYFLESKDSGHGSGSDLKESANYFINLYTFFANALKL 708 (711)
T ss_dssp HHHTTCTTCCEEEEEESSCCSSSCSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCEEEEEECCCCCcCcCCcchHHHHHHHHHHHHHHHhCC
Confidence 999 9999999999999999998543 33456677889999999863
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=235.59 Aligned_cols=329 Identities=13% Similarity=0.080 Sum_probs=206.2
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
...++|||||++|+|.+.. ++.. +||++|+.+ ++.++++... +..
T Consensus 38 ~~~~~~SpDg~~l~~~~~~------------------------~g~~------~l~~~d~~~----g~~~~lt~~~-~~~ 82 (388)
T 3pe7_A 38 FYQKCFTRDGSKLLFGGAF------------------------DGPW------NYYLLDLNT----QVATQLTEGR-GDN 82 (388)
T ss_dssp TTSCCBCTTSCEEEEEECT------------------------TSSC------EEEEEETTT----CEEEECCCSS-CBC
T ss_pred hcCccCCCCCCEEEEEEcC------------------------CCCc------eEEEEeCCC----CceEEeeeCC-CCC
Confidence 3458999999999999873 1222 689999854 5666665322 113
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceE--EecCCeEEEEEecCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFV--WVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~--wspDg~~l~~~~~~~~~~ 268 (953)
...+.|||||++|+|... ...||++|+++++.+.++..+... ..... ++|||+.++.........
T Consensus 83 ~~~~~~spdg~~l~~~~~---------~~~l~~~d~~~g~~~~~~~~~~~~----~~~~~~~~~~dg~~l~~~~~~~~~~ 149 (388)
T 3pe7_A 83 TFGGFLSPDDDALFYVKD---------GRNLMRVDLATLEENVVYQVPAEW----VGYGTWVANSDCTKLVGIEIRREDW 149 (388)
T ss_dssp SSSCEECTTSSEEEEEET---------TTEEEEEETTTCCEEEEEECCTTE----EEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred ccceEEcCCCCEEEEEeC---------CCeEEEEECCCCcceeeeechhhc----ccccceeECCCCCeeccccccCccc
Confidence 447899999999999763 458999999999988887655532 22233 479999888652110000
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCC-CCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSP-DEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~Sp-DG~~ 345 (953)
. .......+.. .+.......|+++|+ +|+.+.++.. ..+..+.||| ||++
T Consensus 150 ~------------------~~~~~~~~~~---------~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~ 202 (388)
T 3pe7_A 150 V------------------PLTDWKKFHE---------FYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDST 202 (388)
T ss_dssp C------------------CCCSHHHHHH---------HGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEE
T ss_pred c------------------cccccchhhh---------hhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCE
Confidence 0 0000000000 000113368999999 8888888765 6678899999 9999
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
|+|...... ......|++++++++..+.++..... ..+..+.|||||+.|+|......
T Consensus 203 l~~~~~~~~-------~~~~~~l~~~d~~~~~~~~l~~~~~~-----------~~~~~~~~spdg~~l~~~~~~~~---- 260 (388)
T 3pe7_A 203 VAFCHEGPH-------DLVDARMWLINEDGTNMRKVKTHAEG-----------ESCTHEFWVPDGSALVYVSYLKG---- 260 (388)
T ss_dssp EEEEECSCT-------TTSSCSEEEEETTSCCCEESCCCCTT-----------EEEEEEEECTTSSCEEEEEEETT----
T ss_pred EEEEEecCC-------CCCcceEEEEeCCCCceEEeeeCCCC-----------cccccceECCCCCEEEEEecCCC----
Confidence 999985311 11134899999998888877653310 01246789999999999843321
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeeccc------ccCCeeeccCCceEEEEEecc-----cCceEEEEEcCCCCCCC
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDL------RYGGISWCDDSLALVYESWYK-----TRRTRTWVISPGSKDVA 494 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~------~~~~~~~SpDg~~l~~~~~~~-----~~~~~l~~~d~~~~~~~ 494 (953)
.....|+++|+ .+++.+.++.... ....+.|||||+.|++..... .....||+++++++ +
T Consensus 261 ----~~~~~l~~~d~---~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~--~ 331 (388)
T 3pe7_A 261 ----SPDRFIYSADP---ETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG--T 331 (388)
T ss_dssp ----CCCEEEEEECT---TTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT--E
T ss_pred ----CCcceEEEEec---CCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC--c
Confidence 11225999996 6677666655433 134568999999999875421 23358999999885 4
Q ss_pred cEEeecCCCccc--cC--CCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCc
Q 002209 495 PRILFDRSSEDV--YS--DPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (953)
Q Consensus 495 ~~~~~~~~~~~~--~~--~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~ 563 (953)
...++....... .. ......++|||||++|+|..... ..++||++|+..+.
T Consensus 332 ~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~------------------g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 332 QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH------------------GKPALYLATLPESV 386 (388)
T ss_dssp EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT------------------SSCEEEEEECCGGG
T ss_pred eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC------------------CceeEEEEECChhc
Confidence 455554432000 00 00011167999999999987321 35679999987543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-23 Score=231.94 Aligned_cols=344 Identities=13% Similarity=0.102 Sum_probs=215.9
Q ss_pred CceeeeecCCCCC---cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEec
Q 002209 177 GQEIEIQGFPDGA---KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN 253 (953)
Q Consensus 177 ~~~~~l~~~~~~~---~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp 253 (953)
...++|+..+... ....|+|||||++|+|.+. .++..+||++|+++|+.++++...... +..+.|||
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~------~~g~~~l~~~d~~~g~~~~lt~~~~~~----~~~~~~sp 90 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGA------FDGPWNYYLLDLNTQVATQLTEGRGDN----TFGGFLSP 90 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEEC------TTSSCEEEEEETTTCEEEECCCSSCBC----SSSCEECT
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEc------CCCCceEEEEeCCCCceEEeeeCCCCC----ccceEEcC
Confidence 4556665433111 2334999999999999874 345779999999999999998766532 33678999
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-
Q 002209 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP- 331 (953)
Q Consensus 254 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~- 331 (953)
||+.|+|.. ....|+++|+ +|+.+.+...
T Consensus 91 dg~~l~~~~-------------------------------------------------~~~~l~~~d~~~g~~~~~~~~~ 121 (388)
T 3pe7_A 91 DDDALFYVK-------------------------------------------------DGRNLMRVDLATLEENVVYQVP 121 (388)
T ss_dssp TSSEEEEEE-------------------------------------------------TTTEEEEEETTTCCEEEEEECC
T ss_pred CCCEEEEEe-------------------------------------------------CCCeEEEEECCCCcceeeeech
Confidence 999999881 1247889999 8877666543
Q ss_pred -Ccc--cccccCCCCcEEEEEEecCCcccc---------ccCCCCCcceEEEeccCceEEEeccCCCcccCCcccccccc
Q 002209 332 -AVY--TSLDPSPDEKYILISSIHRPYSFI---------VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (953)
Q Consensus 332 -~~~--~~~~~SpDG~~l~~~~~~~~~~~~---------~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~ 399 (953)
... ....++|||+.|+........... .........|+++|+++++.+.++....
T Consensus 122 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~------------- 188 (388)
T 3pe7_A 122 AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQ------------- 188 (388)
T ss_dssp TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESS-------------
T ss_pred hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCc-------------
Confidence 222 223459999999876533210000 0001223589999999888887765431
Q ss_pred Cccceeecc-CCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc--cccCCeeeccCCceEEEEEec
Q 002209 400 GMRSINWRS-DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--LRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 400 ~~~~~~wsp-Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~--~~~~~~~~SpDg~~l~~~~~~ 476 (953)
.+..+.||| ||+.|+|....... .....||++++ ++++.+.++... ..+..+.|||||++|+|.+..
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~-------~~~~~l~~~d~---~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 189 WLGHPIYRPYDDSTVAFCHEGPHD-------LVDARMWLINE---DGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp CEEEEEEETTEEEEEEEEECSCTT-------TSSCSEEEEET---TSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred cccccEECCCCCCEEEEEEecCCC-------CCcceEEEEeC---CCCceEEeeeCCCCcccccceECCCCCEEEEEecC
Confidence 235689999 99999998431100 12458999996 677777776554 235678999999999998765
Q ss_pred ccC-ceEEEEEcCCCCCCCcEEeecCCCc-cccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeE
Q 002209 477 KTR-RTRTWVISPGSKDVAPRILFDRSSE-DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFL 554 (953)
Q Consensus 477 ~~~-~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 554 (953)
.+. ...||++|++++ +.+.+...... .....+.. ..|||||++|++...+. .+.. ......|
T Consensus 259 ~~~~~~~l~~~d~~~g--~~~~l~~~~~~~~~~~~~~~--~~~spdg~~l~~~~~~~-----------~~~~-~~~~~~i 322 (388)
T 3pe7_A 259 KGSPDRFIYSADPETL--ENRQLTSMPACSHLMSNYDG--SLMVGDGSDAPVDVQDD-----------SGYK-IENDPFL 322 (388)
T ss_dssp TTCCCEEEEEECTTTC--CEEEEEEECCEEEEEECTTS--SEEEEEECCC------------------------CCCCEE
T ss_pred CCCCcceEEEEecCCC--ceEEEEcCCCceeeeecCCC--CeEccCCCcceeEeeec-----------cccc-cCCCCEE
Confidence 433 235999999986 44444332210 00000011 46999999999875321 0000 1124569
Q ss_pred EEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCC
Q 002209 555 DLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (953)
Q Consensus 555 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~ 620 (953)
|+||+++++.++|+..... +......-......++|||||+.+++..... ...+||.+++..+.
T Consensus 323 ~~~d~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 323 YVFNMKNGTQHRVARHDTS-WKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-GKPALYLATLPESV 386 (388)
T ss_dssp EEEETTTTEEEEEEECCCC-CCCBTTBSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCGGG
T ss_pred EEEeccCCceEEeccccCc-ccccccccccCCCCccCCCCCCEEEEEecCC-CceeEEEEECChhc
Confidence 9999999999998876641 0000000000123468999999999887654 45689999986553
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=247.03 Aligned_cols=336 Identities=10% Similarity=0.034 Sum_probs=215.9
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCc-cccccccceEEecCCeEEEEEecCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI-YLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~-~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
....+.|||||+.|+.. ...|+++++++|+.+.+...... ..+.....+.|||||+.|++.....
T Consensus 18 ~~~~~~w~~dg~~~~~~-----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~--- 83 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ-----------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYV--- 83 (740)
T ss_dssp CCCCEEECSSSEEEEEE-----------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEE---
T ss_pred cccccEECCCCcEEEEc-----------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCe---
Confidence 35679999999766651 34899999999988777554431 1111123489999999999883211
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l 346 (953)
..+.+...+.+|++|+ +|+.++++.. ..+..++|||||++|
T Consensus 84 -------------------------------------~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~l 126 (740)
T 4a5s_A 84 -------------------------------------KQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKL 126 (740)
T ss_dssp -------------------------------------ECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCE
T ss_pred -------------------------------------eeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEE
Confidence 1111114478999999 8988888875 778899999999999
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcc----cCCccccc--cccCccceeeccCCCCceEEEEec
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE----DIPIAFNS--VRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~----~~p~~~~~--~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
||++. .+|++|+++++..++|+...... ..+.+... .....+.+.|||||+.|+|.....
T Consensus 127 a~~~~--------------~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~ 192 (740)
T 4a5s_A 127 AYVWN--------------NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND 192 (740)
T ss_dssp EEEET--------------TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred EEEEC--------------CeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcc
Confidence 99972 38999999988888887643221 11111100 012345699999999999983211
Q ss_pred c-CCCccc----------------------ccccCCeEEEEecCCCCC---C---CceEEee------cccccCCeeecc
Q 002209 421 D-GGDAKV----------------------EVTPRDIIYTQQAEPVQG---E---GPEILHK------LDLRYGGISWCD 465 (953)
Q Consensus 421 ~-~~~~~~----------------------~~~~~~~l~~~d~~~~~g---~---~~~~l~~------~~~~~~~~~~Sp 465 (953)
. -..+.. .......|+++|+ ++ + +.+.+.. .+..+..++|||
T Consensus 193 ~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp 269 (740)
T 4a5s_A 193 TEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNT---DSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT 269 (740)
T ss_dssp TTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEET---TSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE
T ss_pred cCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEEC---CCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC
Confidence 1 000000 0011236899996 55 4 4455543 344456789999
Q ss_pred CCceEEEEEecccCceEEEEEcCCCCCC-----CcEEe-ecCCCccccC-CCCCCCeEeccCCCEEEEEeeeccCCCcEE
Q 002209 466 DSLALVYESWYKTRRTRTWVISPGSKDV-----APRIL-FDRSSEDVYS-DPGSPMMRRTSTGTYVIAKIKKENDEGTYI 538 (953)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~~~-----~~~~~-~~~~~~~~~~-~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~ 538 (953)
||+.+++..++.+....|+++|++++.. ....+ .+.....+.. .... +.|||||+++++.....
T Consensus 270 dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~--p~fspDG~~l~~~~s~~------- 340 (740)
T 4a5s_A 270 QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE--PHFTLDGNSFYKIISNE------- 340 (740)
T ss_dssp TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC--CEECTTSSEEEEEEECT-------
T ss_pred CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCC--ceEcCCCCEEEEEEEcC-------
Confidence 9998888877766556899999888630 11222 2222211110 0112 56999999988433211
Q ss_pred EEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEec--C-CCCceEEEEE
Q 002209 539 LLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKES--K-TENTQYYIQS 615 (953)
Q Consensus 539 ~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~-~~p~~l~~~~ 615 (953)
....+||+||+++++.++||.+... +... +++|++.++|.... . ....+||.++
T Consensus 341 ----------~G~~~l~~~~~~~~~~~~lT~g~~~-----v~~~--------~~~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 341 ----------EGYRHICYFQIDKKDCTFITKGTWE-----VIGI--------EALTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp ----------TSCEEEEEEETTCSSCEESCCSSSC-----EEEE--------EEECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred ----------CCceEEEEEECCCCceEecccCCEE-----EEEE--------EEEeCCEEEEEEecCCCCCceeEEEEEE
Confidence 1256899999999999999988654 2221 23568888887765 1 2346899999
Q ss_pred CCCCCee-EEe
Q 002209 616 WPDKKSC-QIT 625 (953)
Q Consensus 616 ~~~g~~~-~Lt 625 (953)
+.+++.+ .||
T Consensus 398 ~~g~~~~~~lt 408 (740)
T 4a5s_A 398 LIDYTKVTCLS 408 (740)
T ss_dssp TTEEEEEEESS
T ss_pred CCCCCcceeec
Confidence 8776654 566
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-22 Score=254.91 Aligned_cols=387 Identities=13% Similarity=0.055 Sum_probs=247.1
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCC
Q 002209 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (953)
Q Consensus 108 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~ 187 (953)
...+..++||| ++|||.+.. +||+|++.+ +..++|+.++
T Consensus 14 ~~~~~~~~~S~--~~iaf~~~~----------------------------------~l~~~~~~g----g~~~~lt~~~- 52 (1045)
T 1k32_A 14 PNLLLNPDIHG--DRIIFVCCD----------------------------------DLWEHDLKS----GSTRKIVSNL- 52 (1045)
T ss_dssp CCCCEEEEEET--TEEEEEETT----------------------------------EEEEEETTT----CCEEEEECSS-
T ss_pred cceEeCcEEeC--CEEEEEECC----------------------------------cEEEEECCC----CcEEEeeeCC-
Confidence 34567899995 699999864 789999843 5677787543
Q ss_pred CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccc-------cceEEecCCeEEEE
Q 002209 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIF-------DNFVWVNNSTLLVC 260 (953)
Q Consensus 188 ~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~-------~~~~wspDg~~l~~ 260 (953)
..+..++|||||++|||.+... ..++..+||++++++|+.++|+.+... + ..++|||||+ |+|
T Consensus 53 -~~v~~~~~SPDG~~la~~s~~~---~~~~~~~i~~~d~~~g~~~~lt~~~~~-----~~~~~~~~~~~~~SpDg~-ll~ 122 (1045)
T 1k32_A 53 -GVINNARFFPDGRKIAIRVMRG---SSLNTADLYFYNGENGEIKRITYFSGK-----STGRRMFTDVAGFDPDGN-LII 122 (1045)
T ss_dssp -SEEEEEEECTTSSEEEEEEEES---TTCCEEEEEEEETTTTEEEECCCCCEE-----EETTEECSEEEEECTTCC-EEE
T ss_pred -CcccCeEECCCCCEEEEEEeec---cCCCCCeEEEEECCCCCeEEcccCCCc-----ccccccccccccCCCCCE-EEE
Confidence 4689999999999999987531 113567999999999999999876542 4 6899999999 555
Q ss_pred EecCCC---C-C-C----------CCCCCCCCCCceeecCCCcccc------------------chhhhh----------
Q 002209 261 TIPLLR---G-D-P----------PKKPLVPLGPKMQSNEKRDIIQ------------------VRTFQD---------- 297 (953)
Q Consensus 261 ~~~~~~---~-~-~----------~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~---------- 297 (953)
+..... . . . ......+.....++. + .+.. .+.|..
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~ 200 (1045)
T 1k32_A 123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV 200 (1045)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE
T ss_pred EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECc
Confidence 533210 0 0 0 000000000000000 0 0000 000000
Q ss_pred -------hcCCcchhhhhhh---hccceEEEEEc-CCceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCc
Q 002209 298 -------LLKDEYDEDLFDY---YATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPR 366 (953)
Q Consensus 298 -------~~~~~~d~~~~~~---~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~ 366 (953)
......+ .++.. .+...||.++. ++..+.++....+..++|||||++|+|.. + .
T Consensus 201 ~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~-~-------------~ 265 (1045)
T 1k32_A 201 DMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK-G-------------G 265 (1045)
T ss_dssp CCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEE-T-------------T
T ss_pred CCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEe-C-------------C
Confidence 0000011 11100 03457999998 66777777665566779999999999985 2 3
Q ss_pred ceEEEeccCceEEEeccCCCcccCCccccccccCccceeec-cCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCC
Q 002209 367 QVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR-SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG 445 (953)
Q Consensus 367 ~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ws-pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g 445 (953)
.|++|+++++....+...... ..+. +......+..++|| |||+.|++.. ...++++++ .+
T Consensus 266 ~i~~~d~~~~~l~~l~~~~~~-~~~~-~~~~~~~v~~~~~S~pdG~~la~~~--------------~~~i~~~~~---~~ 326 (1045)
T 1k32_A 266 SIYIFNPDTEKIEKIEIGDLE-SPED-RIISIPSKFAEDFSPLDGDLIAFVS--------------RGQAFIQDV---SG 326 (1045)
T ss_dssp EEEEECTTTCCEEECCCCCCC-BCCS-EEEECGGGGEEEEEECGGGCEEEEE--------------TTEEEEECT---TS
T ss_pred EEEEecCCceEeeeeccCccc-cccc-ccccccccceeeecCCCCCEEEEEE--------------cCEEEEEcC---CC
Confidence 899999976555544331110 0010 00112345789999 9999999872 457899985 55
Q ss_pred CCceEEeeccc-ccCCeeeccCCceEEEEEecccCceEEE-EEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCE
Q 002209 446 EGPEILHKLDL-RYGGISWCDDSLALVYESWYKTRRTRTW-VISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523 (953)
Q Consensus 446 ~~~~~l~~~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~l~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~ 523 (953)
++.+.+..... .+..++|| ||+.|++.+. ..+|| +++++++ +...+. .....+.. +.|||||++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~----~~~l~~~~d~~~~--~~~~l~-~~~~~~~~------~~~SpDG~~ 392 (1045)
T 1k32_A 327 TYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR----EGDFLGIYDYRTG--KAEKFE-ENLGNVFA------MGVDRNGKF 392 (1045)
T ss_dssp SBEEECSCCSCEEEEEECSS-SEEEEEEEET----TEEEEEEEETTTC--CEEECC-CCCCSEEE------EEECTTSSE
T ss_pred CceEEccCCCcceEEeeeEc-CCCeEEEEEC----CCceEEEEECCCC--CceEec-CCccceee------eEECCCCCE
Confidence 66666655555 67789999 9999999875 24899 9998875 344444 22222222 789999999
Q ss_pred EEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEe
Q 002209 524 VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKE 603 (953)
Q Consensus 524 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (953)
|++...+ ..|++||+.+++.+.+...... .....+|||||+.+++...
T Consensus 393 la~~~~~---------------------~~v~~~d~~tg~~~~~~~~~~~-----------~v~~~~~SpDG~~la~~~~ 440 (1045)
T 1k32_A 393 AVVANDR---------------------FEIMTVDLETGKPTVIERSREA-----------MITDFTISDNSRFIAYGFP 440 (1045)
T ss_dssp EEEEETT---------------------SEEEEEETTTCCEEEEEECSSS-----------CCCCEEECTTSCEEEEEEE
T ss_pred EEEECCC---------------------CeEEEEECCCCceEEeccCCCC-----------CccceEECCCCCeEEEEec
Confidence 9987631 2599999999998888743321 0123579999999988876
Q ss_pred cC------CCCceEEEEECCCCCeeEEecC
Q 002209 604 SK------TENTQYYIQSWPDKKSCQITDF 627 (953)
Q Consensus 604 ~~------~~p~~l~~~~~~~g~~~~Lt~~ 627 (953)
.. ..+..++++++.+++...++..
T Consensus 441 ~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~ 470 (1045)
T 1k32_A 441 LKHGETDGYVMQAIHVYDMEGRKIFAATTE 470 (1045)
T ss_dssp ECSSTTCSCCEEEEEEEETTTTEEEECSCS
T ss_pred CccccccCCCCCeEEEEECCCCcEEEeeCC
Confidence 54 3456899999988876666643
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-22 Score=244.56 Aligned_cols=339 Identities=12% Similarity=0.059 Sum_probs=202.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++|||...+ . ...+..+...|++||+.+ ++.++++......
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~-----------------------~-~~~~~~~~~~i~~~d~~~----~~~~~l~~~~~~~ 113 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNV-----------------------E-PIYQHSYTGYYVLSKIPH----GDPQSLDPPEVSN 113 (723)
T ss_dssp TCSEEEECTTSSEEEEEESC-----------------------C-CCSSSCCCSEEEEEESSS----CCCEECCCTTCCS
T ss_pred ccceEEECCCCCEEEEEecC-----------------------c-cceeecceeeEEEEECCC----CceEeccCCcccc
Confidence 36789999999999999874 1 111111224789999954 3345554332221
Q ss_pred -cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc--c------------ccccceEEecC
Q 002209 190 -KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL--N------------AIFDNFVWVNN 254 (953)
Q Consensus 190 -~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~--~------------~~~~~~~wspD 254 (953)
.+..++|||||++|||.+ ..+||++++++|+.++++..+.... + ..+..++||||
T Consensus 114 ~~~~~~~~SPdG~~la~~~----------~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpD 183 (723)
T 1xfd_A 114 AKLQYAGWGPKGQQLIFIF----------ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD 183 (723)
T ss_dssp CCCSBCCBCSSTTCEEEEE----------TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT
T ss_pred ccccccEECCCCCEEEEEE----------CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCC
Confidence 478899999999999976 2489999999999888876533210 0 01247999999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-
Q 002209 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP- 331 (953)
Q Consensus 255 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~- 331 (953)
|+.|++...+.............+. .... ...+....++.. .....|+++|+ +++. +.+..+
T Consensus 184 g~~la~~~~~~~~~~~~~~~~~~~~-----~~~~-------~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~ 248 (723)
T 1xfd_A 184 GTRLAYAAINDSRVPIMELPTYTGS-----IYPT-------VKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPD 248 (723)
T ss_dssp SSEEEEEEEECTTSCEEEECCCSSS-----SSCC-------CEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCC
T ss_pred CCEEEEEEECCCccceEEeeccCCc-----CCCc-------ceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCc
Confidence 9999998543321100000000000 0000 000111111110 12358999999 7763 666542
Q ss_pred ------CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCcccee
Q 002209 332 ------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (953)
Q Consensus 332 ------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (953)
..+..++|||||++|++...+.. ....|++||+++++.+.+........ .......++
T Consensus 249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---------~~~~i~~~d~~~g~~~~~~~~~~~~~-------~~~~~~~~~ 312 (723)
T 1xfd_A 249 DPRMREYYITMVKWATSTKVAVTWLNRAQ---------NVSILTLCDATTGVCTKKHEDESEAW-------LHRQNEEPV 312 (723)
T ss_dssp CGGGSSEEEEEEEESSSSEEEEEEEETTS---------CEEEEEEEETTTCCEEEEEEEECSSC-------CCCCCCCCE
T ss_pred cCCCccceeEEEEEeCCCeEEEEEEcCCC---------CeEEEEEEeCCCCcceEEEEeccCCE-------EeccCCCce
Confidence 34567999999998877764421 12379999998777665543210000 000013689
Q ss_pred eccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC---ceEEeecccccCC-eeeccCCceEEEEEeccc-Cc
Q 002209 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG---PEILHKLDLRYGG-ISWCDDSLALVYESWYKT-RR 480 (953)
Q Consensus 406 wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~---~~~l~~~~~~~~~-~~~SpDg~~l~~~~~~~~-~~ 480 (953)
|||||+.|+|.....++.. ....+||++++ .+++. .+.++.+...+.. +.|||||+.|+|.+..+. ..
T Consensus 313 ~spdg~~l~~~~~~~~~~~-----~~~~~l~~~d~--~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 385 (723)
T 1xfd_A 313 FSKDGRKFFFIRAIPQGGR-----GKFYHITVSSS--QPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRR 385 (723)
T ss_dssp ECTTSCSEEEEEEECCSSS-----SCEEEEEEECS--SCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTC
T ss_pred EcCCCCeEEEEEecccCCC-----cceeEEEEEec--cCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcc
Confidence 9999999998733322210 11347888882 25565 6667655554444 689999999999876541 34
Q ss_pred eEEEEEcCCCCCCCcEEeecC--CCccccCCCCCCCeEeccCCCEEEEEeeec
Q 002209 481 TRTWVISPGSKDVAPRILFDR--SSEDVYSDPGSPMMRRTSTGTYVIAKIKKE 531 (953)
Q Consensus 481 ~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~ 531 (953)
.+||.++.+++ .....++.. ....+.. ++|||||+++++.....
T Consensus 386 ~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~------~~~spdg~~l~~~~~~~ 431 (723)
T 1xfd_A 386 RQLYSANTVGN-FNRQCLSCDLVENCTYFS------ASFSHSMDFFLLKCEGP 431 (723)
T ss_dssp CEEEEECSSTT-CCCBCSSTTSSSSCCCCE------EEECTTSSEEEEECCSS
T ss_pred eEEEEEeCCCC-CCcceecccccCCCCeEE------EEECCCCCEEEEEccCC
Confidence 58999998764 123333321 1111111 78999999999887543
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-22 Score=205.12 Aligned_cols=222 Identities=18% Similarity=0.206 Sum_probs=166.0
Q ss_pred CCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEE
Q 002209 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (953)
Q Consensus 636 ~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (953)
.+..+.++++. +|..+.++++.|++. +++.|+||++||... ........+..|+++||.|
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~p~~~----~~~~p~vv~~HG~~g---------------~~~~~~~~~~~l~~~G~~v 62 (241)
T 3f67_A 3 AIIAGETSIPS-QGENMPAYHARPKNA----DGPLPIVIVVQEIFG---------------VHEHIRDLCRRLAQEGYLA 62 (241)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEETTC----CSCEEEEEEECCTTC---------------SCHHHHHHHHHHHHTTCEE
T ss_pred cceeeeEEEec-CCcceEEEEecCCCC----CCCCCEEEEEcCcCc---------------cCHHHHHHHHHHHHCCcEE
Confidence 35677888988 889999999999752 235899999999421 1111234566788999999
Q ss_pred EEcCCCCCCCCCChhhh----------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCccc
Q 002209 716 LGGPTTPIIGEGDEEAN----------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC 785 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~~----------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~ 785 (953)
+.+++++..|....... .........|+.++++++.+++ +|.++|+|+|||+||.+++.++.++|+ ++
T Consensus 63 ~~~d~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~ 140 (241)
T 3f67_A 63 IAPELYFRQGDPNEYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LK 140 (241)
T ss_dssp EEECTTTTTCCGGGCCSHHHHHHHTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CC
T ss_pred EEecccccCCCCCchhhHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cc
Confidence 99777543332111110 1123467899999999999887 788999999999999999999999987 77
Q ss_pred EEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcE
Q 002209 786 CGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALC 865 (953)
Q Consensus 786 a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~ 865 (953)
++|+..+........ +...+|...+.++++|+|++||++|..+| ++++.++++.+++.+.++
T Consensus 141 ~~v~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~P~l~~~g~~D~~~~--~~~~~~~~~~l~~~~~~~ 202 (241)
T 3f67_A 141 AAVAWYGKLVGEKSL----------------NSPKHPVDIAVDLNAPVLGLYGAKDASIP--QDTVETMRQALRAANATA 202 (241)
T ss_dssp EEEEESCCCSCCCCS----------------SSCCCHHHHGGGCCSCEEEEEETTCTTSC--HHHHHHHHHHHHHTTCSE
T ss_pred eEEEEeccccCCCcc----------------CCccCHHHhhhhcCCCEEEEEecCCCCCC--HHHHHHHHHHHHHcCCCc
Confidence 777776653211100 11234556677889999999999999998 999999999999999999
Q ss_pred EEEEeCCCCccCCC-------cccHHHHHHHHHHHHHHh
Q 002209 866 RLVILPFESHGYAA-------RESIMHVLWETDRWLQKY 897 (953)
Q Consensus 866 ~~~~~~~~~H~~~~-------~~~~~~~~~~i~~fl~~~ 897 (953)
+++++|+++|.+.. .+.....++.+.+||++|
T Consensus 203 ~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 241 (241)
T 3f67_A 203 EIVVYPEADHAFNADYRASYHEESAKDGWQRMLAWFAQY 241 (241)
T ss_dssp EEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCcceecCCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 99999999998852 233466778889998753
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-21 Score=216.93 Aligned_cols=325 Identities=14% Similarity=0.101 Sum_probs=203.0
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
+..++|||||++|+|.... .+. .+||++++.+ ++.++++... ...
T Consensus 38 ~~~~~~SpdG~~l~~~~~~------------------------~g~------~~l~~~d~~~----~~~~~l~~~~-~~~ 82 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDF------------------------DGN------RNYYLLNLET----QQAVQLTEGK-GDN 82 (396)
T ss_dssp TTSCCBCTTSCEEEEEECT------------------------TSS------CEEEEEETTT----TEEEECCCSS-CBC
T ss_pred eecCcCCCCCCEEEEEEec------------------------CCC------ceEEEEECCC----CcEEEeecCC-CCc
Confidence 5688999999999999863 122 2689999843 4555554321 112
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
...+.|||||++|+|... ..+||++++++++.++++..+. .|+++|+.|+|........
T Consensus 83 ~~~~~~spdg~~l~~~~~---------~~~l~~~d~~~~~~~~~~~~~~----------~~~~~g~~l~~~~~~~~~~-- 141 (396)
T 3c5m_A 83 TFGGFISTDERAFFYVKN---------ELNLMKVDLETLEEQVIYTVDE----------EWKGYGTWVANSDCTKLVG-- 141 (396)
T ss_dssp TTTCEECTTSSEEEEEET---------TTEEEEEETTTCCEEEEEECCT----------TEEEEEEEEECTTSSEEEE--
T ss_pred cccceECCCCCEEEEEEc---------CCcEEEEECCCCCcEEEEeccc----------ccCCCCCEEEeccCCcccc--
Confidence 334899999999999873 3379999999999888865443 1889999888752110000
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhh------hccceEEEEEc-CCceeEeCCC-CcccccccCC-
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDY------YATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSP- 341 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~Sp- 341 (953)
++.. ......++..+.+ .....|+++|+ +|+.+.+... ..+..+.|||
T Consensus 142 ----------~~~~-------------~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~ 198 (396)
T 3c5m_A 142 ----------IEIL-------------KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPF 198 (396)
T ss_dssp ----------EEEE-------------GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT
T ss_pred ----------cccc-------------ccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCC
Confidence 0000 0000111111111 13468999999 8887777654 5677899999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
||++|+|.+... . ......|++++++++..+.+...... ..+..++|||||+.|+|......
T Consensus 199 dg~~l~~~~~~~-~------~~~~~~l~~~d~~~~~~~~l~~~~~~-----------~~~~~~~~spdg~~l~~~~~~~~ 260 (396)
T 3c5m_A 199 DDSTVGFCHEGP-H------DLVDARMWLVNEDGSNVRKIKEHAEG-----------ESCTHEFWIPDGSAMAYVSYFKG 260 (396)
T ss_dssp EEEEEEEEECSC-S------SSCSCCCEEEETTSCCCEESSCCCTT-----------EEEEEEEECTTSSCEEEEEEETT
T ss_pred CCCEEEEEecCC-C------CCCCceEEEEECCCCceeEeeccCCC-----------ccccceEECCCCCEEEEEecCCC
Confidence 899999997421 1 11124799999988776766542100 12346899999999988743221
Q ss_pred CCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeecc-CCceEEEEEec------------ccCceEEEEEcC
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD-DSLALVYESWY------------KTRRTRTWVISP 488 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~Sp-Dg~~l~~~~~~------------~~~~~~l~~~d~ 488 (953)
.....|+++|+ .+++.+.+...... . +.||| ||+.|++.... ......||++++
T Consensus 261 --------~~~~~l~~~d~---~~g~~~~l~~~~~~-~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 261 --------QTDRVIYKANP---ETLENEEVMVMPPC-S-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp --------TCCEEEEEECT---TTCCEEEEEECCSE-E-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred --------CccceEEEEEC---CCCCeEEeeeCCCC-C-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 11234999996 56666666544332 2 89999 99988775421 112358999999
Q ss_pred CCCCCCcEEeecCCCcc------ccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCC
Q 002209 489 GSKDVAPRILFDRSSED------VYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTG 562 (953)
Q Consensus 489 ~~~~~~~~~~~~~~~~~------~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~ 562 (953)
+++ +...++...... .+.. ...+.|||||++|+|..... ....||++|++++
T Consensus 328 ~~~--~~~~l~~~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~s~~~------------------~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 328 KAK--SAQKLCKHSTSWDVLDGDRQIT--HPHPSFTPNDDGVLFTSDFE------------------GVPAIYIADVPES 385 (396)
T ss_dssp TTT--BCCEEEECCCCCCCBTTBSSTT--CCCCEECTTSSEEEEEECTT------------------SSCEEEEEECCTT
T ss_pred ccC--ceEEccCCCCccccccccccCC--CCCceEccCCCeEEEEecCC------------------CCceEEEEEEccc
Confidence 875 344454432210 0000 11157999999999987321 2456999999888
Q ss_pred ceEEE
Q 002209 563 SKERI 567 (953)
Q Consensus 563 ~~~~l 567 (953)
+.+.+
T Consensus 386 ~~~~~ 390 (396)
T 3c5m_A 386 YKHLE 390 (396)
T ss_dssp CC---
T ss_pred ccccc
Confidence 76654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-21 Score=234.17 Aligned_cols=332 Identities=13% Similarity=0.147 Sum_probs=212.7
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc------------------c--ccccc
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL------------------N--AIFDN 248 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~------------------~--~~~~~ 248 (953)
..+..++|||||++|+|....+ .++....||++|+++|+.++++....... . ..+..
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d---~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKD---SDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCS---SCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCceEecCCCEEEEEeccC---CCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 3578899999999999987411 12235689999999999887765432100 0 11568
Q ss_pred eEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC---c
Q 002209 249 FVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG---T 324 (953)
Q Consensus 249 ~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g---~ 324 (953)
++|||||+.|++. ....|+++++ +| +
T Consensus 114 ~~~SpDg~~l~~~--------------------------------------------------~~~~i~~~d~~~~~~~~ 143 (741)
T 2ecf_A 114 YQWSPDAQRLLFP--------------------------------------------------LGGELYLYDLKQEGKAA 143 (741)
T ss_dssp CEECTTSSEEEEE--------------------------------------------------ETTEEEEEESSSCSTTS
T ss_pred eEECCCCCEEEEE--------------------------------------------------eCCcEEEEECCCCCcce
Confidence 9999999999987 1257999999 77 7
Q ss_pred eeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcc---cCCccccc-ccc
Q 002209 325 VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE---DIPIAFNS-VRK 399 (953)
Q Consensus 325 ~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~---~~p~~~~~-~~~ 399 (953)
.+.++.. ..+..++|||||++|+|.+. .+|++||+++++.+.++...... ..+.+... ...
T Consensus 144 ~~~l~~~~~~~~~~~~SPDG~~la~~~~--------------~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~ 209 (741)
T 2ecf_A 144 VRQLTHGEGFATDAKLSPKGGFVSFIRG--------------RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMD 209 (741)
T ss_dssp CCBCCCSSSCEEEEEECTTSSEEEEEET--------------TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSC
T ss_pred EEEcccCCcccccccCCCCCCEEEEEeC--------------CcEEEEecCCCCEEEeccCCccceeccccceeeeeccc
Confidence 7777766 67889999999999999972 28999999988888776543210 00000000 011
Q ss_pred CccceeeccCCCCceEEEEeccCCCc----------------c----cccccCCeEEEEecCCCCC-CCceEEee---cc
Q 002209 400 GMRSINWRSDKPSTLYWAETQDGGDA----------------K----VEVTPRDIIYTQQAEPVQG-EGPEILHK---LD 455 (953)
Q Consensus 400 ~~~~~~wspDg~~i~~~~~~~~~~~~----------------~----~~~~~~~~l~~~d~~~~~g-~~~~~l~~---~~ 455 (953)
.+..++|||||+.|+|.......... . ........|+++|+ ++ ++.+.+.. ..
T Consensus 210 ~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~---~~~~~~~~~~~~~~~~ 286 (741)
T 2ecf_A 210 RHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP---AEQAQTQWIDLGKEQD 286 (741)
T ss_dssp CCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS---STTCCCEEECCCSCSS
T ss_pred cccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC---CCCCceEEecCCCCcc
Confidence 24679999999999998332110000 0 00011237889986 55 66665542 33
Q ss_pred cccCCeeeccCCceEEEEEe-cccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCC
Q 002209 456 LRYGGISWCDDSLALVYESW-YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDE 534 (953)
Q Consensus 456 ~~~~~~~~SpDg~~l~~~~~-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~ 534 (953)
..+..++| |||++|++... .......|+++|+.++ +...+........... ...+.|||||+ +++.....
T Consensus 287 ~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~--~~~~~~spdg~-~~~~~~~~--- 357 (741)
T 2ecf_A 287 IYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN--QQRVLAHETSPTWVPL--HNSLRFLDDGS-ILWSSERT--- 357 (741)
T ss_dssp EEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC--CEEEEEEEECSSCCCC--CSCCEECTTSC-EEEEECTT---
T ss_pred eEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC--ceEEEEEcCCCCcCCc--CCceEECCCCe-EEEEecCC---
Confidence 45667999 99999998875 3334568999999886 3344433221110000 00167999999 44443211
Q ss_pred CcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCC-CceEEE
Q 002209 535 GTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTE-NTQYYI 613 (953)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-p~~l~~ 613 (953)
...+||.+|++++ .+.|+..+.. +... ..||+||+.+++....... ...||.
T Consensus 358 ---------------g~~~l~~~~~~~~-~~~l~~~~~~-----v~~~------~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 358 ---------------GFQHLYRIDSKGK-AAALTHGNWS-----VDEL------LAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp ---------------SSCEEEEECSSSC-EEESCCSSSC-----EEEE------EEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred ---------------CccEEEEEcCCCC-eeeeeecceE-----EEeE------eEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 2346999998777 7777766543 1111 2489999998887764431 345788
Q ss_pred EECCCCCeeEEec
Q 002209 614 QSWPDKKSCQITD 626 (953)
Q Consensus 614 ~~~~~g~~~~Lt~ 626 (953)
++..++..++|+.
T Consensus 411 ~~~~g~~~~~l~~ 423 (741)
T 2ecf_A 411 VPLQGGQPQRLSK 423 (741)
T ss_dssp EETTCCCCEECCC
T ss_pred EEcCCCCeeeccc
Confidence 8766665677764
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=219.53 Aligned_cols=231 Identities=19% Similarity=0.143 Sum_probs=174.2
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
...+.++++. +|.+|++++++|++. ++.|+||++||+... ... .......|+++||+|+
T Consensus 125 ~~~~~v~~~~-dg~~i~~~l~~p~~~-----~~~P~vl~~hG~~~~--------------~~~-~~~~~~~l~~~G~~v~ 183 (386)
T 2jbw_A 125 PPAERHELVV-DGIPMPVYVRIPEGP-----GPHPAVIMLGGLEST--------------KEE-SFQMENLVLDRGMATA 183 (386)
T ss_dssp SCEEEEEEEE-TTEEEEEEEECCSSS-----CCEEEEEEECCSSCC--------------TTT-THHHHHHHHHTTCEEE
T ss_pred CCeEEEEEEe-CCEEEEEEEEcCCCC-----CCCCEEEEeCCCCcc--------------HHH-HHHHHHHHHhCCCEEE
Confidence 5678899887 899999999999862 358999999985311 001 1233667889999999
Q ss_pred EcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC
Q 002209 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~ 796 (953)
.+++ +|+|.+............++.+++++|.+++.+|.++++|+|+|+||++++.++.+ |++|+++|++ |+.+.
T Consensus 184 ~~d~---rG~G~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~la~~~a~~-~~~~~a~v~~-~~~~~ 258 (386)
T 2jbw_A 184 TFDG---PGQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAAC-EPRLAACISW-GGFSD 258 (386)
T ss_dssp EECC---TTSGGGTTTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHH-CTTCCEEEEE-SCCSC
T ss_pred EECC---CCCCCCCCCCCCCccHHHHHHHHHHHHHhCCCcCcccEEEEEEChHHHHHHHHHcC-CcceeEEEEe-ccCCh
Confidence 9655 56666522211223344567888999999888899999999999999999999999 7899999999 88775
Q ss_pred CCCCcCccc----------ccchhhhhH-HHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHH-HhCCCc
Q 002209 797 TLTPFGFQN----------EDRTLWEAT-STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNAL-KGHGAL 864 (953)
Q Consensus 797 ~~~~~~~~~----------~~~~~~~~~-~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l-~~~g~~ 864 (953)
......+.. ....+++.. ..+..+++...+.++++|+|++||++|. |+ +.++.++++++ +. +
T Consensus 259 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-v~--~~~~~~l~~~l~~~---~ 332 (386)
T 2jbw_A 259 LDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VP--LSFVDTVLELVPAE---H 332 (386)
T ss_dssp STTGGGSCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SC--THHHHHHHHHSCGG---G
T ss_pred HHHHHhccHHHHHHHHHHhCCCCHHHHHHHHHHhCChhhhhcccCCCEEEEECCCCC-CC--HHHHHHHHHHhcCC---C
Confidence 322110000 001122233 5566778888899999999999999999 98 99999999988 64 5
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccCC
Q 002209 865 CRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 865 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (953)
++++++++++|.+ .++...+.+.+.+||+++++..
T Consensus 333 ~~~~~~~~~gH~~--~~~~~~~~~~i~~fl~~~l~~~ 367 (386)
T 2jbw_A 333 LNLVVEKDGDHCC--HNLGIRPRLEMADWLYDVLVAG 367 (386)
T ss_dssp EEEEEETTCCGGG--GGGTTHHHHHHHHHHHHHHTSS
T ss_pred cEEEEeCCCCcCC--ccchHHHHHHHHHHHHHhcCCc
Confidence 8999999999975 4456688899999999999754
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.4e-22 Score=211.03 Aligned_cols=237 Identities=15% Similarity=0.124 Sum_probs=170.0
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCC
Q 002209 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (953)
Q Consensus 642 ~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~ 721 (953)
.++...+|..+.+++..|....+ .++.|+||++|||.+.... .......+..|+++||.|+.++++
T Consensus 17 ~~~~~~~g~~l~~~~~~~~~~~~--~~~~p~vv~~HGgg~~~~~------------~~~~~~~~~~l~~~G~~v~~~d~~ 82 (276)
T 3hxk_A 17 STFSLNDTAWVDFYQLQNPRQNE--NYTFPAIIICPGGGYQHIS------------QRESDPLALAFLAQGYQVLLLNYT 82 (276)
T ss_dssp EECCCBTTBEEEEECCCC--------CCBCEEEEECCSTTTSCC------------GGGSHHHHHHHHHTTCEEEEEECC
T ss_pred ccccCCCCeEEEEEEeCCccccc--CCCCCEEEEEcCCccccCC------------chhhHHHHHHHHHCCCEEEEecCc
Confidence 34566788888876655543111 2458999999997432211 111234566788999999996664
Q ss_pred CCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHh-CCCcccEEEEcccCCCCC
Q 002209 722 PIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAH-APHLFCCGIARSGAYNRT 797 (953)
Q Consensus 722 ~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~~~~d~~ 797 (953)
|+|.+... ..+...+.|+.++++++.+.. .+|+++|+|+||||||.+++.++.+ .+.+++++|+.+|+.+..
T Consensus 83 ---g~g~s~~~-~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~ 158 (276)
T 3hxk_A 83 ---VMNKGTNY-NFLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFT 158 (276)
T ss_dssp ---CTTSCCCS-CTHHHHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTT
T ss_pred ---cCCCcCCC-CcCchHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHH
Confidence 55543221 224577889999999998863 3788999999999999999999988 678999999999987633
Q ss_pred CCCcCccc-ccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCcc
Q 002209 798 LTPFGFQN-EDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876 (953)
Q Consensus 798 ~~~~~~~~-~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 876 (953)
.. +.... ......+. . ...++...+.++++|+|++||++|..|| +.++.+++++++..+.+++++++++++|.
T Consensus 159 ~~-~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 232 (276)
T 3hxk_A 159 FG-WPSDLSHFNFEIEN--I-SEYNISEKVTSSTPPTFIWHTADDEGVP--IYNSLKYCDRLSKHQVPFEAHFFESGPHG 232 (276)
T ss_dssp SS-CSSSSSSSCCCCSC--C-GGGBTTTTCCTTSCCEEEEEETTCSSSC--THHHHHHHHHHHTTTCCEEEEEESCCCTT
T ss_pred hh-CCcchhhhhcCchh--h-hhCChhhccccCCCCEEEEecCCCceeC--hHHHHHHHHHHHHcCCCeEEEEECCCCCC
Confidence 22 11000 00011111 1 4456777888899999999999999999 99999999999999999999999999998
Q ss_pred CCCcc------------cHHHHHHHHHHHHHHhccCCC
Q 002209 877 YAARE------------SIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 877 ~~~~~------------~~~~~~~~i~~fl~~~l~~~~ 902 (953)
+.... ....+.+.+.+||+++.+..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~ 270 (276)
T 3hxk_A 233 VSLANRTTAPSDAYCLPSVHRWVSWASDWLERQIKNLE 270 (276)
T ss_dssp CTTCSTTSCSSSTTCCHHHHTHHHHHHHHHHHHHHTTC
T ss_pred ccccCccccccccccCchHHHHHHHHHHHHHhCccccc
Confidence 75322 346788889999999876543
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.4e-22 Score=207.53 Aligned_cols=230 Identities=13% Similarity=0.080 Sum_probs=149.3
Q ss_pred CCCCeeEEecCCCCCCCcCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCC
Q 002209 617 PDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNE 696 (953)
Q Consensus 617 ~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~ 696 (953)
..|+.+..+..+........++.+.+++ ..||.+|++++|+|++ ..+.|+||++||++.. .
T Consensus 9 ~~~~~r~~~~~~~~~~~~~~~~e~~~~~-~~dG~~i~g~l~~P~~-----~~~~p~Vl~~HG~g~~-------------~ 69 (259)
T 4ao6_A 9 HHGSMRHQMSWNGKDERKLSVQERGFSL-EVDGRTVPGVYWSPAE-----GSSDRLVLLGHGGTTH-------------K 69 (259)
T ss_dssp --------CEECSCCEEETTEEEEEEEE-EETTEEEEEEEEEESS-----SCCSEEEEEEC-------------------
T ss_pred ccCcceeeeccCCCccccCCceEEEEEE-eeCCeEEEEEEEeCCC-----CCCCCEEEEeCCCccc-------------c
Confidence 3555555554443222222233334544 4699999999999976 3458999999997421 1
Q ss_pred CCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh---------------------hhhHHHHHHHHHHHHHHHHHcCC
Q 002209 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---------------------DRFVEQLVACAEAAVEEVVRRGV 755 (953)
Q Consensus 697 ~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---------------------~~~~~~~~~D~~~~~~~l~~~~~ 755 (953)
........++.|+++||+|+.+|++ |+|.+... .......+.|..++++++...
T Consensus 70 ~~~~~~~~a~~la~~Gy~Vl~~D~r---G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~-- 144 (259)
T 4ao6_A 70 KVEYIEQVAKLLVGRGISAMAIDGP---GHGERASVQAGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAE-- 144 (259)
T ss_dssp --CHHHHHHHHHHHTTEEEEEECCC---C-------------CCGGGSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--
T ss_pred cchHHHHHHHHHHHCCCeEEeeccC---CCCCCCCcccccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--
Confidence 1111234567899999999996664 44433110 111234567888889888654
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEE
Q 002209 756 AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILL 835 (953)
Q Consensus 756 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li 835 (953)
+|+++|+++|+|+||++++.+++..| +++|+|+..+.... . ...++...+.+|++|+|+
T Consensus 145 ~d~~rv~~~G~S~GG~~a~~~a~~~p-ri~Aav~~~~~~~~------------~--------~~~~~~~~a~~i~~P~Li 203 (259)
T 4ao6_A 145 EGPRPTGWWGLSMGTMMGLPVTASDK-RIKVALLGLMGVEG------------V--------NGEDLVRLAPQVTCPVRY 203 (259)
T ss_dssp HCCCCEEEEECTHHHHHHHHHHHHCT-TEEEEEEESCCTTS------------T--------THHHHHHHGGGCCSCEEE
T ss_pred cCCceEEEEeechhHHHHHHHHhcCC-ceEEEEEecccccc------------c--------cccchhhhhccCCCCEEE
Confidence 67889999999999999999999996 47777665443210 0 011344566789999999
Q ss_pred EEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 836 ~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
+||++|.+|| ++++.++|+++.. .+++++++|+ +|... ...+..+.+++||++||+
T Consensus 204 ~hG~~D~~vp--~~~~~~l~~al~~--~~k~l~~~~G-~H~~~---p~~e~~~~~~~fl~~hLk 259 (259)
T 4ao6_A 204 LLQWDDELVS--LQSGLELFGKLGT--KQKTLHVNPG-KHSAV---PTWEMFAGTVDYLDQRLK 259 (259)
T ss_dssp EEETTCSSSC--HHHHHHHHHHCCC--SSEEEEEESS-CTTCC---CHHHHTHHHHHHHHHHCC
T ss_pred EecCCCCCCC--HHHHHHHHHHhCC--CCeEEEEeCC-CCCCc---CHHHHHHHHHHHHHHhcC
Confidence 9999999999 9999999999853 4578889998 56432 234667889999999985
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-21 Score=216.95 Aligned_cols=256 Identities=15% Similarity=0.134 Sum_probs=185.8
Q ss_pred CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCC
Q 002209 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLG 278 (953)
Q Consensus 199 DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 278 (953)
.+++|+|..... .+.....|+++|++++..+.++.+... +..++|||||+.|++...+.
T Consensus 142 ~~~~l~~~s~~~---~~~~~~~i~i~d~~g~~~~~l~~~~~~-----v~~~~~Spdg~~la~~s~~~------------- 200 (415)
T 2hqs_A 142 FRTRIAYVVQTN---GGQFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFES------------- 200 (415)
T ss_dssp TTCEEEEEEECS---SSSCCEEEEEEETTSCSCEEEEEESSC-----EEEEEECTTSSEEEEEECTT-------------
T ss_pred CCCEEEEEEecC---CCCccceEEEEcCCCCCCEEEeCCCCc-----ceeeEEcCCCCEEEEEEecC-------------
Confidence 488999987521 111127999999998888888765442 67899999999999872110
Q ss_pred CceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCcc
Q 002209 279 PKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYS 356 (953)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~ 356 (953)
+...|+++|+ +|+.+.+... ..+..++|||||++|+|+....
T Consensus 201 ---------------------------------~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~--- 244 (415)
T 2hqs_A 201 ---------------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT--- 244 (415)
T ss_dssp ---------------------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTT---
T ss_pred ---------------------------------CCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecC---
Confidence 2357899999 8888777765 6778999999999999887432
Q ss_pred ccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEE
Q 002209 357 FIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIY 436 (953)
Q Consensus 357 ~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~ 436 (953)
...+|++||+++++.+.++... ..+..++|||||+.|++.... +....||
T Consensus 245 -------g~~~i~~~d~~~~~~~~l~~~~-------------~~~~~~~~spdg~~l~~~s~~----------~g~~~i~ 294 (415)
T 2hqs_A 245 -------GSLNLYVMDLASGQIRQVTDGR-------------SNNTEPTWFPDSQNLAFTSDQ----------AGRPQVY 294 (415)
T ss_dssp -------SSCEEEEEETTTCCEEECCCCS-------------SCEEEEEECTTSSEEEEEECT----------TSSCEEE
T ss_pred -------CCceEEEEECCCCCEEeCcCCC-------------CcccceEECCCCCEEEEEECC----------CCCcEEE
Confidence 1237999999987777776543 123578999999999887311 2234899
Q ss_pred EEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeE
Q 002209 437 TQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMR 516 (953)
Q Consensus 437 ~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 516 (953)
++++ .+++.+.++.....+..++|||||++|++....++ ...|++++++++ +...+.... .+.. +.
T Consensus 295 ~~d~---~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g-~~~i~~~d~~~~--~~~~l~~~~--~~~~------~~ 360 (415)
T 2hqs_A 295 KVNI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG-QQHIAKQDLATG--GVQVLSSTF--LDET------PS 360 (415)
T ss_dssp EEET---TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS-CEEEEEEETTTC--CEEECCCSS--SCEE------EE
T ss_pred EEEC---CCCCEEEEecCCCcccCeEECCCCCEEEEEECcCC-ceEEEEEECCCC--CEEEecCCC--CcCC------eE
Confidence 9996 66666677666566677999999999999876543 358999999885 334444322 2222 78
Q ss_pred eccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcc
Q 002209 517 RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKE 573 (953)
Q Consensus 517 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~ 573 (953)
|+|||++|++...+. ....||+||++++..++|+...+.
T Consensus 361 ~spdg~~l~~~s~~~------------------~~~~l~~~d~~g~~~~~l~~~~~~ 399 (415)
T 2hqs_A 361 LAPNGTMVIYSSSQG------------------MGSVLNLVSTDGRFKARLPATDGQ 399 (415)
T ss_dssp ECTTSSEEEEEEEET------------------TEEEEEEEETTSCCEEECCCSSSE
T ss_pred EcCCCCEEEEEEcCC------------------CccEEEEEECCCCcEEEeeCCCCC
Confidence 999999999987432 133599999999888888776654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7e-21 Score=241.80 Aligned_cols=273 Identities=8% Similarity=-0.006 Sum_probs=191.1
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..|.|+|| .|+|+.. .++...||.++++++..++++.... +..+.|||||+.|++.
T Consensus 205 ~v~~~~~s~d--~l~~~~~------~dg~~~l~~~~~~g~~~~~l~~~~~------~~~~~~SpDG~~la~~-------- 262 (1045)
T 1k32_A 205 HVSSPVIVGH--RIYFITD------IDGFGQIYSTDLDGKDLRKHTSFTD------YYPRHLNTDGRRILFS-------- 262 (1045)
T ss_dssp CCEEEEEETT--EEEEEEC------TTSSCEEEEEETTSCSCEECCCCCS------SCEEEEEESSSCEEEE--------
T ss_pred cccceEEeCC--EEEEEEe------ccCceEEEEEeCCCCcceEecCCCC------cceeeEcCCCCEEEEE--------
Confidence 4556778876 7777653 4467899999998888888876553 4467999999999987
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC------------Ccccc
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP------------AVYTS 336 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~------------~~~~~ 336 (953)
....||++++ .+....+... ..+..
T Consensus 263 ------------------------------------------~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~ 300 (1045)
T 1k32_A 263 ------------------------------------------KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFA 300 (1045)
T ss_dssp ------------------------------------------ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGE
T ss_pred ------------------------------------------eCCEEEEecCCceEeeeeccCcccccccccccccccce
Confidence 1245667776 4444444331 25788
Q ss_pred cccC-CCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002209 337 LDPS-PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (953)
Q Consensus 337 ~~~S-pDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~ 415 (953)
++|| |||++|++.+ + .++++|++.++..+.+..... ..+..++|| ||+.++|
T Consensus 301 ~~~S~pdG~~la~~~-~-------------~~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~s-dg~~l~~ 353 (1045)
T 1k32_A 301 EDFSPLDGDLIAFVS-R-------------GQAFIQDVSGTYVLKVPEPLR------------IRYVRRGGD-TKVAFIH 353 (1045)
T ss_dssp EEEEECGGGCEEEEE-T-------------TEEEEECTTSSBEEECSCCSC------------EEEEEECSS-SEEEEEE
T ss_pred eeecCCCCCEEEEEE-c-------------CEEEEEcCCCCceEEccCCCc------------ceEEeeeEc-CCCeEEE
Confidence 9999 9999999987 2 289999998877776654321 134578999 9999988
Q ss_pred EEEeccCCCcccccccCCeEE-EEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCC
Q 002209 416 WAETQDGGDAKVEVTPRDIIY-TQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVA 494 (953)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~-~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~ 494 (953)
. +....+| ++++ ++++.+.++.....+..++|||||++|++...+. .|+++|+.++ +
T Consensus 354 ~-------------s~~~~l~~~~d~---~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~----~v~~~d~~tg--~ 411 (1045)
T 1k32_A 354 G-------------TREGDFLGIYDY---RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRF----EIMTVDLETG--K 411 (1045)
T ss_dssp E-------------ETTEEEEEEEET---TTCCEEECCCCCCSEEEEEECTTSSEEEEEETTS----EEEEEETTTC--C
T ss_pred E-------------ECCCceEEEEEC---CCCCceEecCCccceeeeEECCCCCEEEEECCCC----eEEEEECCCC--c
Confidence 7 2245788 8986 6667677765556677899999999999886543 7899999885 4
Q ss_pred cEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCccc
Q 002209 495 PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEK 574 (953)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~ 574 (953)
...+.......+.. ++|||||++|++.....+ ..........|++||+++++...++.....
T Consensus 412 ~~~~~~~~~~~v~~------~~~SpDG~~la~~~~~~~-----------~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~- 473 (1045)
T 1k32_A 412 PTVIERSREAMITD------FTISDNSRFIAYGFPLKH-----------GETDGYVMQAIHVYDMEGRKIFAATTENSH- 473 (1045)
T ss_dssp EEEEEECSSSCCCC------EEECTTSCEEEEEEEECS-----------STTCSCCEEEEEEEETTTTEEEECSCSSSB-
T ss_pred eEEeccCCCCCccc------eEECCCCCeEEEEecCcc-----------ccccCCCCCeEEEEECCCCcEEEeeCCCcc-
Confidence 44554333322222 889999999998874320 000001234699999999987777665432
Q ss_pred ceeeeEeeccCCccccccccCCEEEEEEec
Q 002209 575 YYETTVALMSDQTEGDLYLNQLKILTSKES 604 (953)
Q Consensus 575 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 604 (953)
. ..+.|+|||+.+++....
T Consensus 474 ----~-------~~~~~spdG~~l~~~s~~ 492 (1045)
T 1k32_A 474 ----D-------YAPAFDADSKNLYYLSYR 492 (1045)
T ss_dssp ----E-------EEEEECTTSCEEEEEESC
T ss_pred ----c-------CCceEcCCCCEEEEEecc
Confidence 1 125799999999887654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-21 Score=236.82 Aligned_cols=349 Identities=14% Similarity=0.073 Sum_probs=210.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCce---eeeecCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE---IEIQGFP 186 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~---~~l~~~~ 186 (953)
.+..++|||||++|||.+.. . +..+-+..+.|++||+.+ ++. +++ +
T Consensus 61 ~~~~~~~SpDg~~la~~~~~-----------------------~-~~~~~s~~~~i~~~d~~~----g~~~~~~~l---~ 109 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDY-----------------------S-KLWRYSYTATYYIYDLSN----GEFVRGNEL---P 109 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEE-----------------------E-ECSSSCEEEEEEEEETTT----TEECCSSCC---C
T ss_pred ceeeEEECCCCCeEEEEecC-----------------------c-eeEEeecceEEEEEECCC----Cccccceec---C
Confidence 36789999999999998863 0 111112235899999853 333 333 2
Q ss_pred CCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc--cc------------ccccceEEe
Q 002209 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY--LN------------AIFDNFVWV 252 (953)
Q Consensus 187 ~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~--~~------------~~~~~~~ws 252 (953)
..+..++|||||++|||.. ..+||++++++|+.++++..+... .+ .....+.||
T Consensus 110 --~~~~~~~~SPDG~~la~~~----------~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS 177 (719)
T 1z68_A 110 --RPIQYLCWSPVGSKLAYVY----------QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS 177 (719)
T ss_dssp --SSBCCEEECSSTTCEEEEE----------TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred --cccccceECCCCCEEEEEE----------CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence 2478899999999999975 348999999999988887544211 00 001479999
Q ss_pred cCCeEEEEEecCCCCCCCC---CCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce---
Q 002209 253 NNSTLLVCTIPLLRGDPPK---KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV--- 325 (953)
Q Consensus 253 pDg~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~--- 325 (953)
|||+.|++...+....... ....+.-+... .+..+..+.. .....|+++|+ +++.
T Consensus 178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~---------------~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~ 239 (719)
T 1z68_A 178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTI---------------NIPYPKAGAK---NPVVRIFIIDTTYPAYVGP 239 (719)
T ss_dssp TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEE---------------EEECCBTTSC---CCEEEEEEEESSCHHHHCC
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCccce---------------eecCCCCCCC---CCeeEEEEEECCCCCccce
Confidence 9999999985432211000 00000000000 0000100000 03357999999 6654
Q ss_pred eEeCC------C-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEe----ccCceEEEecc---CCCcccCC
Q 002209 326 KEIGP------P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWT----TDGIFVRELCD---LPLAEDIP 391 (953)
Q Consensus 326 ~~l~~------~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d----~~g~~~~~l~~---~~~~~~~p 391 (953)
..+.. . ..+..++|||||+ +++....... ....|++|| +++++.+.+.. .....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~--------~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~--- 307 (719)
T 1z68_A 240 QEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQ--------NVSVLSICDFREDWQTWDCPKTQEHIEESRTG--- 307 (719)
T ss_dssp EECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESST--------TEEEEEEEEECSSSSSEECCGGGEEEEECSSS---
T ss_pred eEccCCccCCCCcceEEEeEEeCCCe-EEEEEecccc--------CeEEEEEEcccCCCCCCceEEEEecccccCCc---
Confidence 24432 2 4567899999976 4444322210 123699999 77776665542 10000
Q ss_pred ccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEE
Q 002209 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALV 471 (953)
Q Consensus 392 ~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~ 471 (953)
+... .....+.|||||+.++|+.... ++..+|+++++ ++++.+.++.+...+..+.++ ||+.|+
T Consensus 308 -~~~~--~~~~~~~~spdg~~l~~~~~~~---------~g~~~l~~~~~---~~~~~~~lt~~~~~v~~~~~~-d~~~i~ 371 (719)
T 1z68_A 308 -WAGG--FFVSTPVFSYDAISYYKIFSDK---------DGYKHIHYIKD---TVENAIQITSGKWEAINIFRV-TQDSLF 371 (719)
T ss_dssp -CSSS--SSCCCCEECTTSSCEEEEEECT---------TSCEEEEEESS---CSTTCEECSCSSSCEEEEEEE-CSSEEE
T ss_pred -eEcc--ccCCccEECCCCCeEEEEEEcc---------CCceEEEEEEC---CCCceEecccCceEEEEEEEE-eCCEEE
Confidence 0000 0012688999999988863332 23558999986 667778888777767777777 999999
Q ss_pred EEEec--c-cCceEEEEEcCCCCCCCcEEeecC---CCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCC
Q 002209 472 YESWY--K-TRRTRTWVISPGSKDVAPRILFDR---SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGA 545 (953)
Q Consensus 472 ~~~~~--~-~~~~~l~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~ 545 (953)
|.+.. + ....+||.++.+++..+...++.. ....+.. ++|||||+++++.....
T Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~------~~~s~dg~~l~~~~s~~-------------- 431 (719)
T 1z68_A 372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYT------ASFSDYAKYYALVCYGP-------------- 431 (719)
T ss_dssp EEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEE------EEECGGGSSEEEEECCB--------------
T ss_pred EEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEE------EEECCCCCEEEEEcCCC--------------
Confidence 98865 1 234589999986642223444321 1111111 67999999998876322
Q ss_pred CCCCCCCeEEEEECCCCceEEEeccC
Q 002209 546 TPEGNIPFLDLFDINTGSKERIWESD 571 (953)
Q Consensus 546 ~~~~~~~~L~~~d~~~~~~~~l~~~~ 571 (953)
+.+.+++||+++++..+++...
T Consensus 432 ----~~p~~~l~d~~~g~~~~~~~~~ 453 (719)
T 1z68_A 432 ----GIPISTLHDGRTDQEIKILEEN 453 (719)
T ss_dssp ----SSCEEEEECSSSCCEEEEEECC
T ss_pred ----CCCeEEEEECCCCCEEEEeecc
Confidence 2345889999888877776543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=213.21 Aligned_cols=249 Identities=14% Similarity=0.107 Sum_probs=180.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
..|++||+. | ...+.++... ..+..++|||||++|+|... .++...|+++|+++|+.++++.....
T Consensus 159 ~~i~i~d~~--g--~~~~~l~~~~--~~v~~~~~Spdg~~la~~s~------~~~~~~i~~~d~~tg~~~~l~~~~~~-- 224 (415)
T 2hqs_A 159 YELRVSDYD--G--YNQFVVHRSP--QPLMSPAWSPDGSKLAYVTF------ESGRSALVIQTLANGAVRQVASFPRH-- 224 (415)
T ss_dssp EEEEEEETT--S--CSCEEEEEES--SCEEEEEECTTSSEEEEEEC------TTSSCEEEEEETTTCCEEEEECCSSC--
T ss_pred ceEEEEcCC--C--CCCEEEeCCC--CcceeeEEcCCCCEEEEEEe------cCCCcEEEEEECCCCcEEEeecCCCc--
Confidence 378999983 3 4455665433 46889999999999999774 33457999999999998887765442
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
+..++|+|||+.|+++... + +..+||++|+
T Consensus 225 ---~~~~~~spdg~~la~~~~~---------------------------------------~-------g~~~i~~~d~~ 255 (415)
T 2hqs_A 225 ---NGAPAFSPDGSKLAFALSK---------------------------------------T-------GSLNLYVMDLA 255 (415)
T ss_dssp ---EEEEEECTTSSEEEEEECT---------------------------------------T-------SSCEEEEEETT
T ss_pred ---ccCEEEcCCCCEEEEEEec---------------------------------------C-------CCceEEEEECC
Confidence 6689999999999977210 1 3357999999
Q ss_pred CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002209 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
+++.+.++.. ..+..++|||||++|++.+.+. ....|++||+++++.+.++... ..
T Consensus 256 ~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~----------g~~~i~~~d~~~~~~~~l~~~~-------------~~ 312 (415)
T 2hqs_A 256 SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA----------GRPQVYKVNINGGAPQRITWEG-------------SQ 312 (415)
T ss_dssp TCCEEECCCCSSCEEEEEECTTSSEEEEEECTT----------SSCEEEEEETTSSCCEECCCSS-------------SE
T ss_pred CCCEEeCcCCCCcccceEECCCCCEEEEEECCC----------CCcEEEEEECCCCCEEEEecCC-------------Cc
Confidence 8888888776 6778999999999999998432 1237999999987766665432 12
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCc
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 480 (953)
+..++|||||+.|++.... .....|+++++ .+++.+.++... .+..++|||||+.|++.+..++ .
T Consensus 313 ~~~~~~spdG~~l~~~~~~----------~g~~~i~~~d~---~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~-~ 377 (415)
T 2hqs_A 313 NQDADVSSDGKFMVMVSSN----------GGQQHIAKQDL---ATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGM-G 377 (415)
T ss_dssp EEEEEECTTSSEEEEEEEC----------SSCEEEEEEET---TTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETT-E
T ss_pred ccCeEECCCCCEEEEEECc----------CCceEEEEEEC---CCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCC-c
Confidence 3468999999988887221 12457999996 666666666554 6678999999999999876553 3
Q ss_pred eEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCC
Q 002209 481 TRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTG 521 (953)
Q Consensus 481 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG 521 (953)
..||+++++++ ....++.. ...+.. ++|||--
T Consensus 378 ~~l~~~d~~g~--~~~~l~~~-~~~v~~------~~~~~~~ 409 (415)
T 2hqs_A 378 SVLNLVSTDGR--FKARLPAT-DGQVKF------PAWSPYL 409 (415)
T ss_dssp EEEEEEETTSC--CEEECCCS-SSEEEE------EEECCCC
T ss_pred cEEEEEECCCC--cEEEeeCC-CCCCcC------Ccccccc
Confidence 58999999874 34444332 222333 6788754
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-20 Score=226.76 Aligned_cols=333 Identities=13% Similarity=0.122 Sum_probs=212.1
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCC
Q 002209 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (953)
Q Consensus 109 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~ 188 (953)
..+..++|||| ++++|..+. .|++||+.+ ++.++++.. .
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~----------------------------------~i~~~d~~~----~~~~~l~~~--~ 120 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQG----------------------------------GLVGFDMLA----RKVTYLFDT--N 120 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETT----------------------------------EEEEEETTT----TEEEEEECC--T
T ss_pred cCceeEEECCC-CeEEEEECC----------------------------------EEEEEECCC----CceEEccCC--c
Confidence 35778999999 888888653 789999854 455555532 2
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC-----CceeecccCCCccc-cc---------cccceEEec
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-----GKARPLFQSPDIYL-NA---------IFDNFVWVN 253 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~-----g~~~~lt~~~~~~~-~~---------~~~~~~wsp 253 (953)
..+..++|||||++|+|.. ..+||++++++ |+.++++....... ++ .+..+.|||
T Consensus 121 ~~~~~~~~SpdG~~la~~~----------~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp 190 (706)
T 2z3z_A 121 EETASLDFSPVGDRVAYVR----------NHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP 190 (706)
T ss_dssp TCCTTCEECTTSSEEEEEE----------TTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT
T ss_pred ccccCCcCCCCCCEEEEEE----------CCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC
Confidence 4688999999999999964 46899999999 88888876554210 00 025899999
Q ss_pred CCeEEEEEecCCCCCCCCC-C-CCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCC
Q 002209 254 NSTLLVCTIPLLRGDPPKK-P-LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP 330 (953)
Q Consensus 254 Dg~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~ 330 (953)
||+.|++...+........ . .....+.... ......+. -....+|+++|+ +|+.+.+..
T Consensus 191 Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~---------------~~y~~~g~---~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 191 KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKP---------------LYYPMAGT---PSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp TSSEEEEEEEECTTSCCEEEEECCSSSCEEEE---------------ECCCBTTS---CCCEEEEEEEETTTTEEEECCC
T ss_pred CCCEEEEEEECCCCCceEEeeccCCCCCceEE---------------eeCCCCCC---CCCeeEEEEEECCCCceEeecc
Confidence 9999998853222110000 0 0000000000 00000000 013467999999 887776653
Q ss_pred C----CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCcccee
Q 002209 331 P----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (953)
Q Consensus 331 ~----~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (953)
. ..+..++|||||++|++.+.+... ....|++||++++ ..+.+........ ......++
T Consensus 253 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~--------~~~~v~~~d~~~g~~~~~~~~~~~~~~--------~~~~~~~~ 316 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSPDENILYVAEVNRAQ--------NECKVNAYDAETGRFVRTLFVETDKHY--------VEPLHPLT 316 (706)
T ss_dssp CSCTTCEEEEEEECTTSSEEEEEEECTTS--------CEEEEEEEETTTCCEEEEEEEEECSSC--------CCCCSCCE
T ss_pred CCCCceeEeeEEEECCCCEEEEEEeCCCC--------CeeEEEEEECCCCceeeEEEEccCCCe--------ECccCCce
Confidence 2 456789999999999998754311 1238999999877 6665543211100 00124689
Q ss_pred ecc--CCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCC-eeeccCCceEEEEEeccc-Cce
Q 002209 406 WRS--DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG-ISWCDDSLALVYESWYKT-RRT 481 (953)
Q Consensus 406 wsp--Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~-~~~SpDg~~l~~~~~~~~-~~~ 481 (953)
||| ||+ +++.. .. ++..+||.++. +++..+.++.+...+.. ++|||||+.|++....+. ...
T Consensus 317 ~sp~~dg~-~l~~~-~~---------~g~~~l~~~~~---~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~ 382 (706)
T 2z3z_A 317 FLPGSNNQ-FIWQS-RR---------DGWNHLYLYDT---TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLER 382 (706)
T ss_dssp ECTTCSSE-EEEEE-CT---------TSSCEEEEEET---TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred eecCCCCE-EEEEE-cc---------CCccEEEEEEC---CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceE
Confidence 999 998 33431 11 23457888884 66666777777666655 799999999999876543 235
Q ss_pred EEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCC
Q 002209 482 RTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINT 561 (953)
Q Consensus 482 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~ 561 (953)
+||.++++++ ....++.. ..+.. ++|||||+++++...+. ...+.|++||+++
T Consensus 383 ~l~~~d~~~~--~~~~l~~~--~~~~~------~~~spdg~~l~~~~~~~-----------------~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 383 HFYCIDIKGG--KTKDLTPE--SGMHR------TQLSPDGSAIIDIFQSP-----------------TVPRKVTVTNIGK 435 (706)
T ss_dssp EEEEEETTCC--CCEESCCS--SSEEE------EEECTTSSEEEEEEECS-----------------SCSCEEEEEESSS
T ss_pred EEEEEEcCCC--CceeccCC--CceEE------EEECCCCCEEEEEecCC-----------------CCCcEEEEEECCC
Confidence 8999999875 34444422 11222 78999999999886422 1234599999998
Q ss_pred CceEEE
Q 002209 562 GSKERI 567 (953)
Q Consensus 562 ~~~~~l 567 (953)
++.+.+
T Consensus 436 ~~~~~~ 441 (706)
T 2z3z_A 436 GSHTLL 441 (706)
T ss_dssp CEEEEE
T ss_pred CeEeec
Confidence 874333
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-21 Score=214.81 Aligned_cols=326 Identities=12% Similarity=0.082 Sum_probs=202.1
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
+..++|||||++|+|... .++...||++++++++.++++...... ...+.|||||+.|+|..
T Consensus 38 ~~~~~~SpdG~~l~~~~~------~~g~~~l~~~d~~~~~~~~l~~~~~~~----~~~~~~spdg~~l~~~~-------- 99 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGD------FDGNRNYYLLNLETQQAVQLTEGKGDN----TFGGFISTDERAFFYVK-------- 99 (396)
T ss_dssp TTSCCBCTTSCEEEEEEC------TTSSCEEEEEETTTTEEEECCCSSCBC----TTTCEECTTSSEEEEEE--------
T ss_pred eecCcCCCCCCEEEEEEe------cCCCceEEEEECCCCcEEEeecCCCCc----cccceECCCCCEEEEEE--------
Confidence 678999999999999874 235678999999999998887655421 23488999999999871
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-Cc-ccc-----------
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AV-YTS----------- 336 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~-~~~----------- 336 (953)
...+||++++ +|+.+.+... .. ...
T Consensus 100 -----------------------------------------~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 138 (396)
T 3c5m_A 100 -----------------------------------------NELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTK 138 (396)
T ss_dssp -----------------------------------------TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSE
T ss_pred -----------------------------------------cCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCc
Confidence 1136888998 7777666542 11 111
Q ss_pred --------cccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeecc
Q 002209 337 --------LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS 408 (953)
Q Consensus 337 --------~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wsp 408 (953)
+.|||||+++++.... .......|++||+++++.+.+.... ..+..+.|||
T Consensus 139 ~~~~~~~~~~~spdg~~~~~~~~~--------~~~~~~~l~~~d~~~g~~~~~~~~~-------------~~~~~~~~sp 197 (396)
T 3c5m_A 139 LVGIEILKRDWQPLTSWEKFAEFY--------HTNPTCRLIKVDIETGELEVIHQDT-------------AWLGHPIYRP 197 (396)
T ss_dssp EEEEEEEGGGCCCCCSHHHHHHHH--------HTCCCEEEEEEETTTCCEEEEEEES-------------SCEEEEEEET
T ss_pred cccccccccccCCCCcceeeeeec--------cCCCcceEEEEECCCCcEEeeccCC-------------cccccceECC
Confidence 3455555555443210 0012348999999988777666422 1235689999
Q ss_pred -CCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec--ccccCCeeeccCCceEEEEEeccc-CceEEE
Q 002209 409 -DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRYGGISWCDDSLALVYESWYKT-RRTRTW 484 (953)
Q Consensus 409 -Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~--~~~~~~~~~SpDg~~l~~~~~~~~-~~~~l~ 484 (953)
||+.|+|..+ +... .....|+++++ ++++.+.+... ...+..+.|||||++|+|...... ....|+
T Consensus 198 ~dg~~l~~~~~--~~~~-----~~~~~l~~~d~---~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 198 FDDSTVGFCHE--GPHD-----LVDARMWLVNE---DGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp TEEEEEEEEEC--SCSS-----SCSCCCEEEET---TSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred CCCCEEEEEec--CCCC-----CCCceEEEEEC---CCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 8988888742 1100 11257899996 66666666553 234566899999999999876543 223599
Q ss_pred EEcCCCCCCCcEEeecCCCccccCCCCCCCeEecc-CCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCc
Q 002209 485 VISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTS-TGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (953)
Q Consensus 485 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~ 563 (953)
++|+.++ +...+...... . +.||| ||+++++...+. + +.....+.........||+||+++++
T Consensus 268 ~~d~~~g--~~~~l~~~~~~-------~--~~~s~~dg~~l~~~~~~~--p---~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 268 KANPETL--ENEEVMVMPPC-------S--HLMSNFDGSLMVGDGCDA--P---VDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp EECTTTC--CEEEEEECCSE-------E--EEEECSSSSEEEEEECCC---------------CCCCCCEEEEEETTTTB
T ss_pred EEECCCC--CeEEeeeCCCC-------C--CCccCCCCceEEEecCCc--c---eeeccccccccCCCCcEEEEecccCc
Confidence 9999875 34444432211 1 56999 999887754210 0 00000000001124579999999998
Q ss_pred eEEEeccCccc-ceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEe
Q 002209 564 KERIWESDKEK-YYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQIT 625 (953)
Q Consensus 564 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt 625 (953)
.++|+...... .+.. ........++|+|||+.+++..... ...++|.+++.+++.+.+.
T Consensus 332 ~~~l~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~s~~~-~~~~l~~~~~~~~~~~~~~ 391 (396)
T 3c5m_A 332 AQKLCKHSTSWDVLDG--DRQITHPHPSFTPNDDGVLFTSDFE-GVPAIYIADVPESYKHLEH 391 (396)
T ss_dssp CCEEEECCCCCCCBTT--BSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCTTCC----
T ss_pred eEEccCCCCccccccc--cccCCCCCceEccCCCeEEEEecCC-CCceEEEEEEccccccccc
Confidence 88887654310 0000 0000122367999999998887654 4568999998888766544
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.6e-21 Score=210.14 Aligned_cols=245 Identities=14% Similarity=0.153 Sum_probs=166.0
Q ss_pred cCCCceEEEEEEcCCCcEEEEEEEc-CCCCC------------------CCCCCCccEEEEeCCCCCcCcCCCCcccCCC
Q 002209 634 LASLQKELIKYQRKDGVQLSATLYL-PPGYD------------------PSKDGPLPCLFWSYPGEFKSKDAAGQVRGSP 694 (953)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~~~~~l~~-P~~~~------------------~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~ 694 (953)
...+..+.+++...+| +.+.+|+ |.... ....+++|+||++|||.+..+..
T Consensus 59 ~~~v~~~dv~~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~-------- 128 (365)
T 3ebl_A 59 LEGVSSFDHIIDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSA-------- 128 (365)
T ss_dssp BTTEEEEEEEEETTTT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCT--------
T ss_pred CCCCceeeEEecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCC--------
Confidence 3456678899998888 7788887 87531 11234689999999985432211
Q ss_pred CCCCCccchHHHHHHHc-CcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcC----CCCCC-cEEEEEeCh
Q 002209 695 NEFPRIGSTSVLLWLAR-GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG----VAHPS-KIAVGGHSY 768 (953)
Q Consensus 695 ~~~~~~~~~~~~~la~~-G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~----~~d~~-~i~l~G~S~ 768 (953)
.. .........|+++ ||+|+.++|+...+. .+...++|+.++++|+.++. .+|++ ||+|+|+|+
T Consensus 129 ~~--~~~~~~~~~la~~~g~~Vv~~dyR~~p~~--------~~~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~ 198 (365)
T 3ebl_A 129 SS--TIYDSLCRRFVKLSKGVVVSVNYRRAPEH--------RYPCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSS 198 (365)
T ss_dssp TB--HHHHHHHHHHHHHHTSEEEEECCCCTTTS--------CTTHHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETH
T ss_pred ch--hhHHHHHHHHHHHCCCEEEEeeCCCCCCC--------CCcHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCc
Confidence 00 0012345667775 999999888644322 13466799999999999764 58998 999999999
Q ss_pred HHHHHHHHHHhCCC---cccEEEEcccCCCCCCCCcCccc----------ccchhhhhH------HHHHhcCccc-ccCC
Q 002209 769 GAFMTANLLAHAPH---LFCCGIARSGAYNRTLTPFGFQN----------EDRTLWEAT------STYVEMSPFM-SANK 828 (953)
Q Consensus 769 GG~~a~~~a~~~p~---~~~a~v~~~~~~d~~~~~~~~~~----------~~~~~~~~~------~~~~~~sp~~-~~~~ 828 (953)
||++|+.++.+.++ .++++|+++|+++.......... .....|... ......+|+. ....
T Consensus 199 GG~la~~~a~~~~~~~~~~~g~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 278 (365)
T 3ebl_A 199 GGNIAHHVAVRAADEGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRR 278 (365)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTCCC
T ss_pred cHHHHHHHHHHHHhcCCceeeEEEEccccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCcchh
Confidence 99999999987654 79999999998874322110000 000001000 0000112322 2334
Q ss_pred CC----CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCC---CcccHHHHHHHHHHHHHHhccCC
Q 002209 829 LK----KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA---ARESIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 829 i~----~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~---~~~~~~~~~~~i~~fl~~~l~~~ 901 (953)
++ .|+||+||+.|.. ..++.+++++|++.|+++++++|||++|++. ..+....+++.+.+||+++++.+
T Consensus 279 l~~~~~pP~Li~~G~~D~l----~~~~~~~~~~L~~~g~~v~l~~~~g~~H~f~~~~~~~~~~~~~~~i~~Fl~~~~~~~ 354 (365)
T 3ebl_A 279 LGGLPFAKSLIIVSGLDLT----CDRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLNANLYYG 354 (365)
T ss_dssp CTTSCCCCEEEEEETTSTT----HHHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSSCSHHHHHHHHHHHHHHHHHCC--
T ss_pred hccCCCCCEEEEEcCcccc----hhHHHHHHHHHHHCCCCEEEEEECCCcEEEeccCCCHHHHHHHHHHHHHHHHhhhcc
Confidence 44 5899999999965 4567899999999999999999999999875 34566789999999999998755
Q ss_pred C
Q 002209 902 T 902 (953)
Q Consensus 902 ~ 902 (953)
.
T Consensus 355 ~ 355 (365)
T 3ebl_A 355 S 355 (365)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-21 Score=204.17 Aligned_cols=237 Identities=14% Similarity=0.096 Sum_probs=164.1
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCC-CCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEE
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDP-SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~-~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (953)
|..+.+++. .+|..+.+.+|.|+.... ...++.|+||++|||.+..+. ... ....+..|+++||.|
T Consensus 2 m~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~p~vv~~HGgg~~~~~--------~~~----~~~~~~~l~~~G~~v 68 (277)
T 3bxp_A 2 MQVEQRTLN-TAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHS--------GRE----EAPIATRMMAAGMHT 68 (277)
T ss_dssp EEEEEEEEC-STTCCEEEEEEEECCCCSSSCCCCEEEEEEECCSTTTSCC--------CTT----HHHHHHHHHHTTCEE
T ss_pred cceEEEEec-cCCCcceEEEEeCCcccccccCCCccEEEEECCCccccCC--------Ccc----chHHHHHHHHCCCEE
Confidence 445677774 577889999999973210 112358999999997432211 111 123456788899999
Q ss_pred EEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC------------
Q 002209 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHA------------ 780 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~------------ 780 (953)
+.++++ |+|.... .....+.|+.++++++.+.. .+|+++|+|+|||+||.+|+.++.++
T Consensus 69 ~~~d~~---g~g~~~~---~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~ 142 (277)
T 3bxp_A 69 VVLNYQ---LIVGDQS---VYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLD 142 (277)
T ss_dssp EEEECC---CSTTTCC---CTTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCT
T ss_pred EEEecc---cCCCCCc---cCchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcc
Confidence 996664 4442111 23466788889999987752 36778999999999999999999985
Q ss_pred --CCcccEEEEcccCCCCCCCCcCcccccchhh-hhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHH
Q 002209 781 --PHLFCCGIARSGAYNRTLTPFGFQNEDRTLW-EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (953)
Q Consensus 781 --p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~ 857 (953)
+.+++++|+.+|+.+.... +... .... .....+...+|...+.++.+|+|++||++|..+| ++++.+++++
T Consensus 143 ~~~~~~~~~v~~~p~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~~~ 216 (277)
T 3bxp_A 143 HYQGQHAAIILGYPVIDLTAG---FPTT-SAARNQITTDARLWAAQRLVTPASKPAFVWQTATDESVP--PINSLKYVQA 216 (277)
T ss_dssp TCCCCCSEEEEESCCCBTTSS---SSSS-HHHHHHHCSCGGGSBGGGGCCTTSCCEEEEECTTCCCSC--THHHHHHHHH
T ss_pred cccCCcCEEEEeCCcccCCCC---CCCc-cccchhccchhhhcCHhhccccCCCCEEEEeeCCCCccC--hHHHHHHHHH
Confidence 6789999999998763321 1110 0000 0000123456777788888999999999999998 9999999999
Q ss_pred HHhCCCcEEEEEeCCCCccCCCcc--------------cHHHHHHHHHHHHHHhc
Q 002209 858 LKGHGALCRLVILPFESHGYAARE--------------SIMHVLWETDRWLQKYC 898 (953)
Q Consensus 858 l~~~g~~~~~~~~~~~~H~~~~~~--------------~~~~~~~~i~~fl~~~l 898 (953)
++..+.+++++++++++|.+.... ....+.+.+.+||.++.
T Consensus 217 l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 271 (277)
T 3bxp_A 217 MLQHQVATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQG 271 (277)
T ss_dssp HHHTTCCEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCeEEEEEeCCCCcccccccccccCccccccccchHHHHHHHHHHHHHhcc
Confidence 999999999999999999764332 24677888999998864
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.86 E-value=5e-20 Score=193.08 Aligned_cols=213 Identities=17% Similarity=0.164 Sum_probs=162.1
Q ss_pred ceE--EEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEE
Q 002209 638 QKE--LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (953)
Q Consensus 638 ~~~--~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (953)
+.| .+++++.+| .+.++++.|.+ .+.|+||++||.+...+. ............|+++||.|
T Consensus 20 ~~e~~~~~~~~~~g-~l~~~~~~p~~------~~~p~vv~~HG~~~~~~~----------~~~~~~~~~~~~l~~~G~~v 82 (249)
T 2i3d_A 20 QGHMPEVIFNGPAG-RLEGRYQPSKE------KSAPIAIILHPHPQFGGT----------MNNQIVYQLFYLFQKRGFTT 82 (249)
T ss_dssp ----CEEEEEETTE-EEEEEEECCSS------TTCCEEEEECCCGGGTCC----------TTSHHHHHHHHHHHHTTCEE
T ss_pred cCceeEEEEECCCc-eEEEEEEcCCC------CCCCEEEEECCCcccCCC----------ccchHHHHHHHHHHHCCCEE
Confidence 355 888998888 89999998853 237999999995321110 00001124566788999999
Q ss_pred EEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
+.+++ +|+|.+..........+.|+.++++++.++. .+.++++++|||+||.+++.++.++|+ ++++|+++|..+
T Consensus 83 ~~~d~---~g~G~s~~~~~~~~~~~~d~~~~i~~l~~~~-~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~ 157 (249)
T 2i3d_A 83 LRFNF---RSIGRSQGEFDHGAGELSDAASALDWVQSLH-PDSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPN 157 (249)
T ss_dssp EEECC---TTSTTCCSCCCSSHHHHHHHHHHHHHHHHHC-TTCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTT
T ss_pred EEECC---CCCCCCCCCCCCccchHHHHHHHHHHHHHhC-CCCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchh
Confidence 99555 5666664432222344599999999998875 377799999999999999999999988 999999998754
Q ss_pred CCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHh-CCCcEEEEEeCCCC
Q 002209 796 RTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG-HGALCRLVILPFES 874 (953)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~ 874 (953)
.. ....+.++++|+|+++|++|..++ ++.+.++++.++. .+.+++++++++++
T Consensus 158 ~~------------------------~~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 211 (249)
T 2i3d_A 158 TY------------------------DFSFLAPCPSSGLIINGDADKVAP--EKDVNGLVEKLKTQKGILITHRTLPGAN 211 (249)
T ss_dssp TS------------------------CCTTCTTCCSCEEEEEETTCSSSC--HHHHHHHHHHHTTSTTCCEEEEEETTCC
T ss_pred hh------------------------hhhhhcccCCCEEEEEcCCCCCCC--HHHHHHHHHHHhhccCCceeEEEECCCC
Confidence 21 122345678999999999999998 9999999999986 45679999999999
Q ss_pred ccCCCcccHHHHHHHHHHHHHHhccC
Q 002209 875 HGYAARESIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 875 H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (953)
|.+. +....+.+.+.+||.+++..
T Consensus 212 H~~~--~~~~~~~~~i~~fl~~~l~~ 235 (249)
T 2i3d_A 212 HFFN--GKVDELMGECEDYLDRRLNG 235 (249)
T ss_dssp TTCT--TCHHHHHHHHHHHHHHHHTT
T ss_pred cccc--cCHHHHHHHHHHHHHHhcCC
Confidence 9875 56788899999999999854
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=211.43 Aligned_cols=226 Identities=17% Similarity=0.216 Sum_probs=168.1
Q ss_pred ceEEEEEEcC-CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 638 QKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 638 ~~~~~~~~~~-dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
..+.++|.+. +|..+.+++|+|+++.+.+ ++|+||++||+.........+.... ..+.. ..........|+.|+
T Consensus 143 ~~~~~~~~~~~dg~~l~~~v~~P~~~~~~~--~~Pvvv~lHG~g~~~~~~~~~~~~~-~g~~~--~~~~~~~~~~~~~vv 217 (380)
T 3doh_A 143 DFLAFTFKDPETGVEIPYRLFVPKDVNPDR--KYPLVVFLHGAGERGTDNYLQVAGN-RGAVV--WAQPRYQVVHPCFVL 217 (380)
T ss_dssp GEEEEEEECTTTCCEEEEEEECCSSCCTTS--CEEEEEEECCGGGCSSSSSHHHHSS-TTTTG--GGSHHHHTTSCCEEE
T ss_pred cccceeeccCCCCcEEEEEEEcCCCCCCCC--CccEEEEECCCCCCCCchhhhhhcc-cccee--ecCccccccCCEEEE
Confidence 3577889988 9999999999999876544 5999999999754332221111110 00111 111223456889999
Q ss_pred EcCCCCCCCCCChhhh---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 717 GGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
.+++++..++|..+.. .......+.|+.++++++.++..+|++||+|+||||||++++.++.++|++|+++|+++|.
T Consensus 218 ~pd~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~ 297 (380)
T 3doh_A 218 APQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGG 297 (380)
T ss_dssp EECCCTTCCSBTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCC
T ss_pred EecCCCCCcccccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCC
Confidence 9888776666654331 1122456788899999999887799999999999999999999999999999999999987
Q ss_pred CCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCC-CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC
Q 002209 794 YNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (953)
Q Consensus 794 ~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 872 (953)
.+ + ..+.+++ +|+|++||+.|..|| ++++++++++|++.+.++++++||+
T Consensus 298 ~~--------------------------~-~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~~~l~~~g~~~~~~~~~~ 348 (380)
T 3doh_A 298 GD--------------------------V-SKVERIKDIPIWVFHAEDDPVVP--VENSRVLVKKLAEIGGKVRYTEYEK 348 (380)
T ss_dssp CC--------------------------G-GGGGGGTTSCEEEEEETTCSSSC--THHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CC--------------------------h-hhhhhccCCCEEEEecCCCCccC--HHHHHHHHHHHHHCCCceEEEEecC
Confidence 42 1 1122333 899999999999999 9999999999999999999999999
Q ss_pred C---CccCCCcccHHHHHH--HHHHHHHHh
Q 002209 873 E---SHGYAARESIMHVLW--ETDRWLQKY 897 (953)
Q Consensus 873 ~---~H~~~~~~~~~~~~~--~i~~fl~~~ 897 (953)
+ +|++.........+. .+.+||.++
T Consensus 349 ~~h~~h~~~~H~~~~~~~~~~~i~~wL~~~ 378 (380)
T 3doh_A 349 GFMEKHGWDPHGSWIPTYENQEAIEWLFEQ 378 (380)
T ss_dssp THHHHTTCCTTCTHHHHHTCHHHHHHHHTC
T ss_pred CcccCCCCCCchhHHHhcCCHHHHHHHHhh
Confidence 8 454444444555566 889999865
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-21 Score=209.60 Aligned_cols=236 Identities=16% Similarity=0.114 Sum_probs=170.3
Q ss_pred cCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCc
Q 002209 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (953)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (953)
...+..+.+++++.+|.++.++++.|++. .++.|+||++||+.... .+ ......|+++||
T Consensus 63 ~~~~~~~~~~~~~~dg~~i~~~~~~P~~~----~~~~p~vv~~HG~g~~~------------~~----~~~~~~l~~~G~ 122 (337)
T 1vlq_A 63 LKTVEAYDVTFSGYRGQRIKGWLLVPKLE----EEKLPCVVQYIGYNGGR------------GF----PHDWLFWPSMGY 122 (337)
T ss_dssp CSSEEEEEEEEECGGGCEEEEEEEEECCS----CSSEEEEEECCCTTCCC------------CC----GGGGCHHHHTTC
T ss_pred CCCeEEEEEEEEcCCCCEEEEEEEecCCC----CCCccEEEEEcCCCCCC------------CC----chhhcchhhCCC
Confidence 34556889999999999999999999763 23589999999964221 01 112346788999
Q ss_pred EEEEcCCCCCCCCCC--hhhh----------------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChH
Q 002209 714 AILGGPTTPIIGEGD--EEAN----------------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYG 769 (953)
Q Consensus 714 ~V~~~~~~~~~G~G~--~~~~----------------------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~G 769 (953)
+|+.+|+++..+.+. +... ..++...+.|+.++++++.+++.+|+++|+|+|+|+|
T Consensus 123 ~v~~~d~rG~g~s~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~G 202 (337)
T 1vlq_A 123 ICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQG 202 (337)
T ss_dssp EEEEECCTTCCCSSSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHH
T ss_pred EEEEecCCCCCCcccCCCCcccccccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHH
Confidence 999977765432111 0010 1224578999999999999998889999999999999
Q ss_pred HHHHHHHHHhCCCcccEEEEcccCCCCCCC-----C-cCcccccc----hh---hhhHHHHHhcCcccccCCCCCcEEEE
Q 002209 770 AFMTANLLAHAPHLFCCGIARSGAYNRTLT-----P-FGFQNEDR----TL---WEATSTYVEMSPFMSANKLKKPILLV 836 (953)
Q Consensus 770 G~~a~~~a~~~p~~~~a~v~~~~~~d~~~~-----~-~~~~~~~~----~~---~~~~~~~~~~sp~~~~~~i~~P~Li~ 836 (953)
|.+++.++.++| .++++|+.+|..+.... . ..+..... .. ......+..++|...+.++++|+|++
T Consensus 203 G~la~~~a~~~p-~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii 281 (337)
T 1vlq_A 203 GGIALAVSALSK-KAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFS 281 (337)
T ss_dssp HHHHHHHHHHCS-SCCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEE
T ss_pred HHHHHHHHhcCC-CccEEEECCCcccCHHHHHhcCCCcchHHHHHHHHhCchhHHHHHHhhhhccHHHHHHHcCCCEEEE
Confidence 999999999997 59999998886442100 0 00000000 00 00112234456777888999999999
Q ss_pred EeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 837 HGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 837 ~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
||+.|.++| ++++.+++++++. +++++++|+++|.+. .....+.+.+||.++++
T Consensus 282 ~G~~D~~~p--~~~~~~~~~~l~~---~~~~~~~~~~gH~~~----~~~~~~~~~~fl~~~l~ 335 (337)
T 1vlq_A 282 VGLMDNICP--PSTVFAAYNYYAG---PKEIRIYPYNNHEGG----GSFQAVEQVKFLKKLFE 335 (337)
T ss_dssp EETTCSSSC--HHHHHHHHHHCCS---SEEEEEETTCCTTTT----HHHHHHHHHHHHHHHHC
T ss_pred eeCCCCCCC--chhHHHHHHhcCC---CcEEEEcCCCCCCCc----chhhHHHHHHHHHHHHh
Confidence 999999998 9999999888864 489999999999863 23567889999999885
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=202.40 Aligned_cols=232 Identities=16% Similarity=0.131 Sum_probs=169.9
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
..+.++++. +|.++.++++.|+ +.|+||++||+... ... .......|+++||.|+.
T Consensus 5 ~~~~~~~~~-~g~~l~~~~~~p~--------~~p~vv~~HG~~~~-----------~~~----~~~~~~~l~~~g~~v~~ 60 (290)
T 3ksr_A 5 KLSSIEIPV-GQDELSGTLLTPT--------GMPGVLFVHGWGGS-----------QHH----SLVRAREAVGLGCICMT 60 (290)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEEE--------SEEEEEEECCTTCC-----------TTT----THHHHHHHHTTTCEEEC
T ss_pred ceeeEEecC-CCeEEEEEEecCC--------CCcEEEEeCCCCCC-----------cCc----HHHHHHHHHHCCCEEEE
Confidence 356777876 7899999999986 27999999996421 111 22446678889999999
Q ss_pred cCCCCCCCCCChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 718 GPTTPIIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
++.+|+|.+.... ......++|+.++++++.+++.+|.++++|+||||||.+++.++.++| ++++++++|...
T Consensus 61 ---~d~~G~g~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~ 135 (290)
T 3ksr_A 61 ---FDLRGHEGYASMRQSVTRAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALY 135 (290)
T ss_dssp ---CCCTTSGGGGGGTTTCBHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCC
T ss_pred ---eecCCCCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchh
Confidence 4556777765432 245778899999999999888888899999999999999999999987 788888887654
Q ss_pred CCCCCcCcccccchhhhhHHHH-------HhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002209 796 RTLTPFGFQNEDRTLWEATSTY-------VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (953)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~-------~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (953)
... .+...............+ ...++...+.++++|+|++||+.|..++ +.++.++++.++..+ +++++
T Consensus 136 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~--~~~~~~~~~~~~~~~-~~~~~ 211 (290)
T 3ksr_A 136 KDA-HWDQPKVSLNADPDLMDYRRRALAPGDNLALAACAQYKGDVLLVEAENDVIVP--HPVMRNYADAFTNAR-SLTSR 211 (290)
T ss_dssp CSS-CTTSBHHHHHHSTTHHHHTTSCCCGGGCHHHHHHHHCCSEEEEEEETTCSSSC--HHHHHHHHHHTTTSS-EEEEE
T ss_pred hhh-hhhcccccccCChhhhhhhhhhhhhccccHHHHHHhcCCCeEEEEecCCcccC--hHHHHHHHHHhccCC-CceEE
Confidence 221 111110000000001111 1112233456688999999999999998 999999999997765 78999
Q ss_pred EeCCCCccCCCcccHHHHHHHHHHHHHHhccCCC
Q 002209 869 ILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 869 ~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (953)
++++++|.+...+....+.+.+.+||++++....
T Consensus 212 ~~~~~gH~~~~~~~~~~~~~~i~~fl~~~~~~~~ 245 (290)
T 3ksr_A 212 VIAGADHALSVKEHQQEYTRALIDWLTEMVVGRR 245 (290)
T ss_dssp EETTCCTTCCSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred EcCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999886655677888999999999987543
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=213.06 Aligned_cols=221 Identities=19% Similarity=0.200 Sum_probs=157.0
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChh
Q 002209 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (953)
Q Consensus 651 ~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~ 730 (953)
.+.+++|.|++ .++.|+||++||+... .....+..|+++||+|+++|+++ +|.+.
T Consensus 144 ~l~~~l~~P~~-----~~~~P~Vv~~hG~~~~-----------------~~~~~a~~La~~Gy~V~a~D~rG---~g~~~ 198 (422)
T 3k2i_A 144 RVRATLFLPPG-----PGPFPGIIDIFGIGGG-----------------LLEYRASLLAGHGFATLALAYYN---FEDLP 198 (422)
T ss_dssp TEEEEEEECSS-----SCCBCEEEEECCTTCS-----------------CCCHHHHHHHTTTCEEEEEECSS---STTSC
T ss_pred cEEEEEEcCCC-----CCCcCEEEEEcCCCcc-----------------hhHHHHHHHHhCCCEEEEEccCC---CCCCC
Confidence 68999999975 3458999999996311 11234667889999999977765 43332
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccc----
Q 002209 731 ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE---- 806 (953)
Q Consensus 731 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~---- 806 (953)
.. .....++|+.+++++|.++..+|.++|+|+||||||.+++.++.++|+ ++++|+++|........+.+...
T Consensus 199 ~~--~~~~~~~d~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~ 275 (422)
T 3k2i_A 199 NN--MDNISLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYKHSSIPP 275 (422)
T ss_dssp SS--CSCEETHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEETTEEECC
T ss_pred CC--cccCCHHHHHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhcCCcCCC
Confidence 11 111236788999999999888889999999999999999999999987 99999988875322211111000
Q ss_pred -----------------cchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHH-HHHHHHHHhCCCc-EEE
Q 002209 807 -----------------DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS-DRFFNALKGHGAL-CRL 867 (953)
Q Consensus 807 -----------------~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~-~~~~~~l~~~g~~-~~~ 867 (953)
....+.........+....+.++++|+|++||++|.++| ..+. ..+.+.+++.+.+ +++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp--~~~~~~~~~~~l~~~g~~~~~l 353 (422)
T 3k2i_A 276 LGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVGQDDHNWR--SELYAQTVSERLQAHGKEKPQI 353 (422)
T ss_dssp CCBCGGGCEECTTSCEECTTCBCCCTTGGGSTTBCCGGGCCSCEEEEEETTCSSSC--HHHHHHHHHHHHHHTTCCCCEE
T ss_pred cccchhhcccCcchhHHHHHHHhhhhhcccccccccHHHCCCCEEEEEeCCCCCCC--HHHHHHHHHHHHHhcCCCCCEE
Confidence 000001111111123334567789999999999999998 7765 6889999999888 999
Q ss_pred EEeCCCCccCCC---------------------------cccHHHHHHHHHHHHHHhccCC
Q 002209 868 VILPFESHGYAA---------------------------RESIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 868 ~~~~~~~H~~~~---------------------------~~~~~~~~~~i~~fl~~~l~~~ 901 (953)
++||++||.+.. .+..+++++.+.+||+++|+..
T Consensus 354 ~~~~gagH~~~~p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L~~~ 414 (422)
T 3k2i_A 354 ICYPGTGHYIEPPYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHLGGT 414 (422)
T ss_dssp EEETTCCSCCCSTTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEECCCCCEECCCCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999732 1346678899999999999754
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=224.28 Aligned_cols=295 Identities=9% Similarity=0.020 Sum_probs=193.1
Q ss_pred hHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCcee
Q 002209 101 EIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (953)
Q Consensus 101 ~~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~ 180 (953)
.+..+... .+..++|||||++|||.+.. ++ .+.||++. + +..+
T Consensus 15 ~~~~~~~~-~~~~~~~~~DG~~la~~s~~------------------------~g--------~~~lw~~~--~--g~~~ 57 (582)
T 3o4h_A 15 DVERLIAV-EKYSLQGVVDGDKLLVVGFS------------------------EG--------SVNAYLYD--G--GETV 57 (582)
T ss_dssp HHHHHHHS-CEEEEEEEETTTEEEEEEEE------------------------TT--------EEEEEEEE--T--TEEE
T ss_pred HHHHHhcc-chheeecCCCCCeEEEEEcc------------------------CC--------ceeEEEEc--C--CCcE
Confidence 34444444 57889999999999998862 12 33555563 2 5667
Q ss_pred eeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEEC--CCCceeecccCCCccccccccceEEecCCeEE
Q 002209 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV--DTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (953)
Q Consensus 181 ~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~--~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l 258 (953)
+++... ...+..|+|||| +|+|++.. ..++....||++++ +++.. +++.... ....+|+|||+.+
T Consensus 58 ~lt~~~-~~~~~~~~~spd--~~l~~~~~---~~g~~~~~l~~~~~~~~g~~~-~l~~~~~------~~~~~~s~dg~~~ 124 (582)
T 3o4h_A 58 KLNREP-INSVLDPHYGVG--RVILVRDV---SKGAEQHALFKVNTSRPGEEQ-RLEAVKP------MRILSGVDTGEAV 124 (582)
T ss_dssp ECCSSC-CSEECEECTTCS--EEEEEEEC---STTSCCEEEEEEETTSTTCCE-ECTTSCS------BEEEEEEECSSCE
T ss_pred eeeccc-ccccccccCCCC--eEEEEecc---CCCCcceEEEEEeccCCCccc-cccCCCC------ceeeeeCCCCCeE
Confidence 776432 136889999999 68887752 12345678999998 65544 6765544 3367899999877
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCccccc
Q 002209 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSL 337 (953)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~ 337 (953)
+++.. ....++++|+ +|+.++++.... .++
T Consensus 125 ~~~s~------------------------------------------------~~~~~~l~d~~~g~~~~l~~~~~-~~~ 155 (582)
T 3o4h_A 125 VFTGA------------------------------------------------TEDRVALYALDGGGLRELARLPG-FGF 155 (582)
T ss_dssp EEEEE------------------------------------------------CSSCEEEEEEETTEEEEEEEESS-CEE
T ss_pred EEEec------------------------------------------------CCCCceEEEccCCcEEEeecCCC-ceE
Confidence 76621 1123336688 888888775533 789
Q ss_pred ccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEE
Q 002209 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (953)
Q Consensus 338 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~ 417 (953)
+|||||++|++.+.+... ...|++||+++++.+.|+.... ....++|||||+.|+ ..
T Consensus 156 ~~spDG~~la~~~~~~~~---------~~~i~~~d~~~g~~~~l~~~~~-------------~~~~~~~SpDG~~l~-~~ 212 (582)
T 3o4h_A 156 VSDIRGDLIAGLGFFGGG---------RVSLFTSNLSSGGLRVFDSGEG-------------SFSSASISPGMKVTA-GL 212 (582)
T ss_dssp EEEEETTEEEEEEEEETT---------EEEEEEEETTTCCCEEECCSSC-------------EEEEEEECTTSCEEE-EE
T ss_pred EECCCCCEEEEEEEcCCC---------CeEEEEEcCCCCCceEeecCCC-------------ccccceECCCCCEEE-Ec
Confidence 999999999998865321 1379999999888888876432 235799999999887 31
Q ss_pred EeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCee--------eccCCceEEEEEecccCceEEEEEcCC
Q 002209 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGIS--------WCDDSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~--------~SpDg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
.. ++...|+++|+ ++++.+.++.....+..+. ||||| .+++....++ ..+||.+
T Consensus 213 -~~---------~~~~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g-~~~l~~~--- 274 (582)
T 3o4h_A 213 -ET---------AREARLVTVDP---RDGSVEDLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREG-RSAVFID--- 274 (582)
T ss_dssp -EC---------SSCEEEEEECT---TTCCEEECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETT-EEEEEET---
T ss_pred -cC---------CCeeEEEEEcC---CCCcEEEccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCC-cEEEEEE---
Confidence 11 22347999996 6666664455556666777 99999 6776665543 3567766
Q ss_pred CCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEE
Q 002209 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (953)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l 567 (953)
+ +.... ....+.. ++|| ||+.++...... ..+.||++|.++ +.++|
T Consensus 275 g---~~~~~---~~~~v~~------~~~s-dg~~l~~~s~~~------------------~p~~l~~~d~~~-~~~~l 320 (582)
T 3o4h_A 275 G---ERVEA---PQGNHGR------VVLW-RGKLVTSHTSLS------------------TPPRIVSLPSGE-PLLEG 320 (582)
T ss_dssp T---EEECC---CSSEEEE------EEEE-TTEEEEEEEETT------------------EEEEEEEETTCC-EEECC
T ss_pred C---Ceecc---CCCceEE------EEec-CCEEEEEEcCCC------------------CCCeEEEEcCCC-ceEEE
Confidence 2 11111 1112222 7789 888775544211 234688998876 55555
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=195.75 Aligned_cols=207 Identities=15% Similarity=0.092 Sum_probs=157.6
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
+.+++++.+|.++.++++.|++ ++.|+||++||+... .......+..|+++||.|+.++
T Consensus 4 ~~~~~~~~~g~~l~~~~~~p~~------~~~p~vv~~hG~~~~---------------~~~~~~~~~~l~~~g~~v~~~d 62 (236)
T 1zi8_A 4 EGISIQSYDGHTFGALVGSPAK------APAPVIVIAQDIFGV---------------NAFMRETVSWLVDQGYAAVCPD 62 (236)
T ss_dssp TTCCEECTTSCEECEEEECCSS------CSEEEEEEECCTTBS---------------CHHHHHHHHHHHHTTCEEEEEC
T ss_pred ceEEEecCCCCeEEEEEECCCC------CCCCEEEEEcCCCCC---------------CHHHHHHHHHHHhCCcEEEecc
Confidence 4466788899999999999863 248999999995311 0111244567888999999966
Q ss_pred CCCCCCCCChhh-----------------hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 720 TTPIIGEGDEEA-----------------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 720 ~~~~~G~G~~~~-----------------~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
++ |+|.+.. ........+.|+.++++++.++..++ ++++++|||+||.+++.++.++|
T Consensus 63 ~~---g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~- 137 (236)
T 1zi8_A 63 LY---ARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY- 137 (236)
T ss_dssp GG---GGTSTTCBCCTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC-
T ss_pred cc---ccCCCcccccccchhhhhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC-
Confidence 54 4443311 11224566899999999998876555 69999999999999999999997
Q ss_pred cccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCC
Q 002209 783 LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862 (953)
Q Consensus 783 ~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g 862 (953)
++++++.+|... .++...+.++++|+|+++|++|..+| .+.+.++++.++..+
T Consensus 138 -~~~~v~~~~~~~------------------------~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~~~ 190 (236)
T 1zi8_A 138 -VDRAVGYYGVGL------------------------EKQLNKVPEVKHPALFHMGGQDHFVP--APSRQLITEGFGANP 190 (236)
T ss_dssp -SSEEEEESCSSG------------------------GGCGGGGGGCCSCEEEEEETTCTTSC--HHHHHHHHHHHTTCT
T ss_pred -ccEEEEecCccc------------------------ccchhhhhhcCCCEEEEecCCCCCCC--HHHHHHHHHHHHhCC
Confidence 999998877421 02334556788999999999999998 999999999997765
Q ss_pred CcEEEEEeCCCCccCCCcc-------cHHHHHHHHHHHHHHhccC
Q 002209 863 ALCRLVILPFESHGYAARE-------SIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 863 ~~~~~~~~~~~~H~~~~~~-------~~~~~~~~i~~fl~~~l~~ 900 (953)
+++++++++++|.+.... ..+.+.+.+.+||+++++.
T Consensus 191 -~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 234 (236)
T 1zi8_A 191 -LLQVHWYEEAGHSFARTGSSGYVASAAALANERTLDFLVPLQSR 234 (236)
T ss_dssp -TEEEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGGGCC-
T ss_pred -CceEEEECCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhcCC
Confidence 799999999999875332 2457888999999998854
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=207.97 Aligned_cols=230 Identities=13% Similarity=0.108 Sum_probs=166.3
Q ss_pred CCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcE
Q 002209 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (953)
Q Consensus 635 ~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (953)
..+..+.+++.+.+|..+.++++.|++ .++.|+||++||+.... ..+. ....++++||.
T Consensus 78 ~~~~~~~~~~~~~~g~~l~~~~~~P~~-----~~~~p~vv~~HG~g~~~-----------~~~~-----~~~~~~~~G~~ 136 (346)
T 3fcy_A 78 SFAECYDLYFTGVRGARIHAKYIKPKT-----EGKHPALIRFHGYSSNS-----------GDWN-----DKLNYVAAGFT 136 (346)
T ss_dssp TTEEEEEEEEECGGGCEEEEEEEEESC-----SSCEEEEEEECCTTCCS-----------CCSG-----GGHHHHTTTCE
T ss_pred CceEEEEEEEEcCCCCEEEEEEEecCC-----CCCcCEEEEECCCCCCC-----------CChh-----hhhHHHhCCcE
Confidence 445678899999999999999999975 24589999999974221 1111 12367899999
Q ss_pred EEEcCCCCCCCCCCh-------------------hhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002209 715 ILGGPTTPIIGEGDE-------------------EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (953)
Q Consensus 715 V~~~~~~~~~G~G~~-------------------~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (953)
|+.+|+++..+.+.. .....++...+.|+.++++++..+..+|.++|+|+|||+||.+++.
T Consensus 137 v~~~D~rG~g~s~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~ 216 (346)
T 3fcy_A 137 VVAMDVRGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLA 216 (346)
T ss_dssp EEEECCTTSSSSCCCCCCCSSCCSBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHH
T ss_pred EEEEcCCCCCCCCCCCcccCCCCcCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHH
Confidence 999776544322211 1122345677899999999999988888999999999999999999
Q ss_pred HHHhCCCcccEEEEcccCCCCCCCCcCcc--cc---------------cchhhhhHHHHHhcCcccccCCCCCcEEEEEe
Q 002209 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQ--NE---------------DRTLWEATSTYVEMSPFMSANKLKKPILLVHG 838 (953)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~d~~~~~~~~~--~~---------------~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G 838 (953)
++.++|+ ++++|+.+|+.+.....+... .. ..........+...++...+.++++|+|+++|
T Consensus 217 ~a~~~p~-v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~P~lii~G 295 (346)
T 3fcy_A 217 CAALEPR-VRKVVSEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGDVLMCVG 295 (346)
T ss_dssp HHHHSTT-CCEEEEESCSSCCHHHHHHTTCCCGGGHHHHHHHHHHCTTCTTHHHHHHHHGGGCHHHHGGGCCSEEEEEEE
T ss_pred HHHhCcc-ccEEEECCCcccCHHHHhhccccccchHHHHHHHHhcCCCcchHHHHHHHhCcccHHHHHHhcCCCEEEEee
Confidence 9999987 999999998754211000000 00 00000111222334556677889999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
+.|..+| +..+.+++++++. +++++++|+++|.+. ..+.+.+.+||.+
T Consensus 296 ~~D~~~~--~~~~~~~~~~~~~---~~~~~~~~~~gH~~~-----~~~~~~i~~fl~~ 343 (346)
T 3fcy_A 296 LMDQVCP--PSTVFAAYNNIQS---KKDIKVYPDYGHEPM-----RGFGDLAMQFMLE 343 (346)
T ss_dssp TTCSSSC--HHHHHHHHTTCCS---SEEEEEETTCCSSCC-----TTHHHHHHHHHHT
T ss_pred CCCCcCC--HHHHHHHHHhcCC---CcEEEEeCCCCCcCH-----HHHHHHHHHHHHH
Confidence 9999998 8888888877654 689999999999985 3457788999876
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=214.42 Aligned_cols=221 Identities=14% Similarity=0.189 Sum_probs=155.1
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChh
Q 002209 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (953)
Q Consensus 651 ~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~ 730 (953)
.+.+++|.|++ .++.|+||++||+... .+ ...+..|+++||+|+++|+++..+.....
T Consensus 160 ~l~~~l~~P~~-----~~~~P~Vv~lhG~~~~-------------~~----~~~a~~La~~Gy~Vla~D~rG~~~~~~~~ 217 (446)
T 3hlk_A 160 RVRGTLFLPPE-----PGPFPGIVDMFGTGGG-------------LL----EYRASLLAGKGFAVMALAYYNYEDLPKTM 217 (446)
T ss_dssp TEEEEEEECSS-----SCCBCEEEEECCSSCS-------------CC----CHHHHHHHTTTCEEEEECCSSSTTSCSCC
T ss_pred eEEEEEEeCCC-----CCCCCEEEEECCCCcc-------------hh----hHHHHHHHhCCCEEEEeccCCCCCCCcch
Confidence 58999999975 3458999999996311 01 12367789999999997776543322211
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccc----
Q 002209 731 ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE---- 806 (953)
Q Consensus 731 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~---- 806 (953)
. ...++|+.+++++|.++..+|.++|+|+||||||.+|+.++.++|+ ++++|+++|........+.+...
T Consensus 218 ~-----~~~~~d~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~ 291 (446)
T 3hlk_A 218 E-----TLHLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPP 291 (446)
T ss_dssp S-----EEEHHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECC
T ss_pred h-----hCCHHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCc
Confidence 1 1236888999999999988899999999999999999999999987 99999998865322111100000
Q ss_pred -----------------cchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHH-HHHHHHHHhCCCc-EEE
Q 002209 807 -----------------DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS-DRFFNALKGHGAL-CRL 867 (953)
Q Consensus 807 -----------------~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~-~~~~~~l~~~g~~-~~~ 867 (953)
....+..............+.++++|+|++||++|.++| ..+. .++++.++..+.+ +++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp--~~~~~~~~~~~l~~~g~~~~~l 369 (446)
T 3hlk_A 292 VGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWK--SEFYANEACKRLQAHGRRKPQI 369 (446)
T ss_dssp CCBCGGGCEECSSSCEECTTCBCCTTSGGGGGGBCCGGGCCSEEEEEEETTCCSSC--HHHHHHHHHHHHHHTTCCCCEE
T ss_pred cccchhccccccchHHHHHHHHhchhhccccccccCHHHCCCCEEEEEeCCCCCcC--hHHHHHHHHHHHHHcCCCCcEE
Confidence 000000000001112223367788999999999999998 7554 7899999999988 899
Q ss_pred EEeCCCCccCC---------------------------CcccHHHHHHHHHHHHHHhccCC
Q 002209 868 VILPFESHGYA---------------------------ARESIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 868 ~~~~~~~H~~~---------------------------~~~~~~~~~~~i~~fl~~~l~~~ 901 (953)
++||+++|.+. ..+.....++.+.+||+++|+..
T Consensus 370 ~~~pgagH~~~~p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L~~~ 430 (446)
T 3hlk_A 370 ICYPETGHYIEPPYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHLGGH 430 (446)
T ss_dssp EEETTBCSCCCSTTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEECCCCCeECCCCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999983 12235678899999999999643
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-20 Score=201.42 Aligned_cols=231 Identities=15% Similarity=0.145 Sum_probs=165.7
Q ss_pred CCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcE
Q 002209 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (953)
Q Consensus 635 ~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (953)
..+..+.+++.+.+|..+.++++.|++ .++.|+||++||+... + ...+.....|+++||.
T Consensus 52 ~~~~~~~~~~~~~~g~~i~~~~~~P~~-----~~~~p~vv~~HG~~~~--------------~-~~~~~~~~~l~~~g~~ 111 (318)
T 1l7a_A 52 DGVKVYRLTYKSFGNARITGWYAVPDK-----EGPHPAIVKYHGYNAS--------------Y-DGEIHEMVNWALHGYA 111 (318)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEESS-----CSCEEEEEEECCTTCC--------------S-GGGHHHHHHHHHTTCE
T ss_pred CCeEEEEEEEEccCCCEEEEEEEeeCC-----CCCccEEEEEcCCCCC--------------C-CCCcccccchhhCCcE
Confidence 344578889998899999999999975 2358999999996421 0 0112233477889999
Q ss_pred EEEcCCCCCCCCCChhhh--------------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHH
Q 002209 715 ILGGPTTPIIGEGDEEAN--------------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA 774 (953)
Q Consensus 715 V~~~~~~~~~G~G~~~~~--------------------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~ 774 (953)
|+.++++ |+|.+... ..++...+.|+.++++++.++..+|+++|+|+|||+||.+++
T Consensus 112 v~~~d~r---g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~ 188 (318)
T 1l7a_A 112 TFGMLVR---GQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTI 188 (318)
T ss_dssp EEEECCT---TTSSSCCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHH
T ss_pred EEEecCC---CCCCCCCcccccCCccccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHH
Confidence 9997765 44443211 112467899999999999998888889999999999999999
Q ss_pred HHHHhCCCcccEEEEcccCCCCCCC------CcCcccccch------hhhh---HHHHHhcCcccccCCCCCcEEEEEeC
Q 002209 775 NLLAHAPHLFCCGIARSGAYNRTLT------PFGFQNEDRT------LWEA---TSTYVEMSPFMSANKLKKPILLVHGE 839 (953)
Q Consensus 775 ~~a~~~p~~~~a~v~~~~~~d~~~~------~~~~~~~~~~------~~~~---~~~~~~~sp~~~~~~i~~P~Li~~G~ 839 (953)
.++..+|+ ++++|+.+|....... ...+...... .... .......++...+.++++|+|++||+
T Consensus 189 ~~a~~~~~-~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~g~ 267 (318)
T 1l7a_A 189 AAAALSDI-PKAAVADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGL 267 (318)
T ss_dssp HHHHHCSC-CSEEEEESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEET
T ss_pred HHhccCCC-ccEEEecCCcccCHHHHHhcCCcCccHHHHHHHhccCCcccHHHHHHhhccccHHHHHhhCCCCEEEEecc
Confidence 99999976 7788888775431100 0000000000 0000 11222345666778889999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
.|..+| ++++.++++++.. +++++++++++|... ....+.+.+||.++++
T Consensus 268 ~D~~~~--~~~~~~~~~~l~~---~~~~~~~~~~~H~~~-----~~~~~~~~~fl~~~l~ 317 (318)
T 1l7a_A 268 IDKVTP--PSTVFAAYNHLET---KKELKVYRYFGHEYI-----PAFQTEKLAFFKQILK 317 (318)
T ss_dssp TCSSSC--HHHHHHHHHHCCS---SEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHC
T ss_pred CCCCCC--cccHHHHHhhcCC---CeeEEEccCCCCCCc-----chhHHHHHHHHHHHhC
Confidence 999998 8999998887754 389999999999842 4567889999999875
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=186.65 Aligned_cols=209 Identities=19% Similarity=0.164 Sum_probs=160.3
Q ss_pred CCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEE
Q 002209 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (953)
Q Consensus 636 ~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (953)
.+..+.++++. +|.++.++++.|++ +.|+||++||+.... ..+ ........|+++||.|
T Consensus 9 ~~~~~~~~~~~-~g~~l~~~~~~p~~-------~~p~vv~~hG~~~~~-----------~~~--~~~~~~~~l~~~G~~v 67 (223)
T 2o2g_A 9 QPQEYAVSVSV-GEVKLKGNLVIPNG-------ATGIVLFAHGSGSSR-----------YSP--RNRYVAEVLQQAGLAT 67 (223)
T ss_dssp CCCEEEEEEEE-TTEEEEEEEECCTT-------CCEEEEEECCTTCCT-----------TCH--HHHHHHHHHHHHTCEE
T ss_pred CceeeEEEEec-CCeEEEEEEecCCC-------CceEEEEecCCCCCC-----------Ccc--chHHHHHHHHHCCCEE
Confidence 35677888886 88999999999864 379999999963110 000 0123456788899999
Q ss_pred EEcCCCCCCCCCChhhhh------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEE
Q 002209 716 LGGPTTPIIGEGDEEAND------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~------~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (953)
+.+++ +|+|.+.... ........|+.++++++..++.+|.++++++|||+||.+++.++..+|++++++|+
T Consensus 68 ~~~d~---~g~g~s~~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~ 144 (223)
T 2o2g_A 68 LLIDL---LTQEEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVS 144 (223)
T ss_dssp EEECS---SCHHHHHHHHHHCSSTTCHHHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEE
T ss_pred EEEcC---CCcCCCCccchhhcccCcHHHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEE
Confidence 99555 5666654321 33567789999999999998888999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEE
Q 002209 790 RSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869 (953)
Q Consensus 790 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~ 869 (953)
++|..+. ....+.++++|+|+++|++|..+| .. . .+.++..+.++++++
T Consensus 145 ~~~~~~~-------------------------~~~~~~~~~~P~l~i~g~~D~~~~--~~-~---~~~~~~~~~~~~~~~ 193 (223)
T 2o2g_A 145 RGGRPDL-------------------------APSALPHVKAPTLLIVGGYDLPVI--AM-N---EDALEQLQTSKRLVI 193 (223)
T ss_dssp ESCCGGG-------------------------CTTTGGGCCSCEEEEEETTCHHHH--HH-H---HHHHHHCCSSEEEEE
T ss_pred eCCCCCc-------------------------CHHHHhcCCCCEEEEEccccCCCC--HH-H---HHHHHhhCCCeEEEE
Confidence 9886431 012345678999999999998875 33 2 344455567799999
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 870 LPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 870 ~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
+++++|.+...+....+.+.+.+||+++|+
T Consensus 194 ~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 223 (223)
T 2o2g_A 194 IPRASHLFEEPGALTAVAQLASEWFMHYLR 223 (223)
T ss_dssp ETTCCTTCCSTTHHHHHHHHHHHHHHHHCC
T ss_pred eCCCCcccCChHHHHHHHHHHHHHHHHhcC
Confidence 999999986556678889999999999873
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=198.44 Aligned_cols=233 Identities=15% Similarity=0.148 Sum_probs=164.5
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEE
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAI 715 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V 715 (953)
+..+.+++++.+| .+.+++|.|.+. +.|+||++|||.+..+ ....+ ......|++ .||+|
T Consensus 61 ~~~~~~~~~~~~g-~i~~~~~~p~~~------~~p~vv~~HGgg~~~g--------~~~~~----~~~~~~la~~~g~~V 121 (326)
T 3ga7_A 61 MTTRTCAVPTPYG-DVTTRLYSPQPT------SQATLYYLHGGGFILG--------NLDTH----DRIMRLLARYTGCTV 121 (326)
T ss_dssp CEEEEEEECCTTS-CEEEEEEESSSS------CSCEEEEECCSTTTSC--------CTTTT----HHHHHHHHHHHCSEE
T ss_pred cceEEEEeecCCC-CeEEEEEeCCCC------CCcEEEEECCCCcccC--------Chhhh----HHHHHHHHHHcCCEE
Confidence 4558899999898 899999999751 2499999999854322 11122 234556776 79999
Q ss_pred EEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCCc------ccE
Q 002209 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPHL------FCC 786 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~~------~~a 786 (953)
+.++++...++ .+...++|+.++++|+.++. .+|++||+|+|+|+||++|+.++.+.++. +++
T Consensus 122 ~~~dyr~~p~~--------~~~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~ 193 (326)
T 3ga7_A 122 IGIDYSLSPQA--------RYPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIA 193 (326)
T ss_dssp EEECCCCTTTS--------CTTHHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEE
T ss_pred EEeeCCCCCCC--------CCCcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceE
Confidence 99888643322 13456799999999998863 57899999999999999999999887654 899
Q ss_pred EEEcccCCCCCCCCcC--ccccc-chhhhhHHHHH---------hcCcc-----cccCCCCCcEEEEEeCCCCCCCCchH
Q 002209 787 GIARSGAYNRTLTPFG--FQNED-RTLWEATSTYV---------EMSPF-----MSANKLKKPILLVHGEEDNNSGTLTM 849 (953)
Q Consensus 787 ~v~~~~~~d~~~~~~~--~~~~~-~~~~~~~~~~~---------~~sp~-----~~~~~i~~P~Li~~G~~D~~v~~~~~ 849 (953)
+++.+|+.+....... +.... .........+. ..+|. ..+.+...|+||+||+.|.++ .
T Consensus 194 ~vl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~~----~ 269 (326)
T 3ga7_A 194 ILLWYGLYGLQDSVSRRLFGGAWDGLTREDLDMYEKAYLRNDEDRESPWYCLFNNDLTRDVPPCFIASAEFDPLI----D 269 (326)
T ss_dssp EEEESCCCSCSCCHHHHHCCCTTTTCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCSSCCCCEEEEEETTCTTH----H
T ss_pred EEEeccccccCCChhHhhhcCCCCCCCHHHHHHHHHHhCCCCCccCCcccCCCcchhhcCCCCEEEEecCcCcCH----H
Confidence 9999998764322100 00000 00000011110 11222 123345679999999999874 5
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHhccC
Q 002209 850 QSDRFFNALKGHGALCRLVILPFESHGYAAR----ESIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 850 ~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~fl~~~l~~ 900 (953)
++.+++++|++.|+++++++|||++|++... +....+++.+.+||.++++.
T Consensus 270 ~~~~~~~~l~~~g~~~~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l~~ 324 (326)
T 3ga7_A 270 DSRLLHQTLQAHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARMKT 324 (326)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCcEEEEEeCCCccchhhhcCccHHHHHHHHHHHHHHHHHhcc
Confidence 8899999999999999999999999998432 34578899999999998853
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=190.76 Aligned_cols=227 Identities=20% Similarity=0.170 Sum_probs=158.2
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCC
Q 002209 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (953)
Q Consensus 642 ~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~ 721 (953)
+++. .+|.++.++++.|++. .++.|+||++||.... ............|+++||.|+++
T Consensus 4 ~~~~-~~g~~l~~~~~~p~~~----~~~~p~vvl~HG~~~~-------------~~~~~~~~~~~~l~~~g~~vi~~--- 62 (251)
T 2wtm_A 4 MYID-CDGIKLNAYLDMPKNN----PEKCPLCIIIHGFTGH-------------SEERHIVAVQETLNEIGVATLRA--- 62 (251)
T ss_dssp EEEE-ETTEEEEEEEECCTTC----CSSEEEEEEECCTTCC-------------TTSHHHHHHHHHHHHTTCEEEEE---
T ss_pred eEEe-cCCcEEEEEEEccCCC----CCCCCEEEEEcCCCcc-------------cccccHHHHHHHHHHCCCEEEEe---
Confidence 4555 4889999999998742 1247999999995311 00111123455678899999994
Q ss_pred CCCCCCChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC-
Q 002209 722 PIIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL- 798 (953)
Q Consensus 722 ~~~G~G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~- 798 (953)
+.+|+|.+.... ......+.|+.++++++.++..+ ++++|+||||||.+++.++.++|++++++|+.+|......
T Consensus 63 D~~G~G~S~~~~~~~~~~~~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 140 (251)
T 2wtm_A 63 DMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEI 140 (251)
T ss_dssp CCTTSTTSSSCGGGCCHHHHHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHH
T ss_pred cCCCCCCCCCccccCCHHHHHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHH
Confidence 556777765422 23567788999999999766444 4899999999999999999999999999999988643100
Q ss_pred -----------CCcCccccc-ch----h-hhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhC
Q 002209 799 -----------TPFGFQNED-RT----L-WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861 (953)
Q Consensus 799 -----------~~~~~~~~~-~~----~-~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~ 861 (953)
......... .. . ..........++...+.++++|+|++||++|..+| ++.+.++++.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~--~~~~~~~~~~~~-- 216 (251)
T 2wtm_A 141 ARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVP--YEASVAFSKQYK-- 216 (251)
T ss_dssp HHHTEETTEECBTTBCCSEEEETTTEEEETHHHHHHTTCCHHHHHHHCCSCEEEEEETTCSSSC--HHHHHHHHHHSS--
T ss_pred HhhhhhccccCCchhcchHHhhhhccccchHHHHHHHccCHHHHHHhcCCCEEEEEeCCCCCcC--hHHHHHHHHhCC--
Confidence 000000000 00 0 00011111223344556789999999999999998 888888877663
Q ss_pred CCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 862 GALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 862 g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
+++++++++++|.. .+....+.+.+.+||++++.
T Consensus 217 --~~~~~~~~~~gH~~--~~~~~~~~~~i~~fl~~~~~ 250 (251)
T 2wtm_A 217 --NCKLVTIPGDTHCY--DHHLELVTEAVKEFMLEQIA 250 (251)
T ss_dssp --SEEEEEETTCCTTC--TTTHHHHHHHHHHHHHHHHC
T ss_pred --CcEEEEECCCCccc--chhHHHHHHHHHHHHHHhcc
Confidence 47999999999988 67788899999999998874
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.4e-20 Score=185.47 Aligned_cols=203 Identities=19% Similarity=0.153 Sum_probs=149.8
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
..+.+++++.+| ++.++++.|++ .++.|+||++||++...+.. ...........|+++||.|+.
T Consensus 5 ~~~~~~~~~~~g-~l~~~~~~p~~-----~~~~~~vv~~HG~~~~~~~~----------~~~~~~~~~~~l~~~g~~v~~ 68 (208)
T 3trd_A 5 TNEDFLIQGPVG-QLEVMITRPKG-----IEKSVTGIICHPHPLHGGTM----------NNKVVTTLAKALDELGLKTVR 68 (208)
T ss_dssp SSSCEEEECSSS-EEEEEEECCSS-----CCCSEEEEEECSCGGGTCCT----------TCHHHHHHHHHHHHTTCEEEE
T ss_pred ccceEEEECCCc-eEEEEEEcCCC-----CCCCCEEEEEcCCCCCCCcc----------CCchHHHHHHHHHHCCCEEEE
Confidence 356788999999 99999998864 23489999999954221110 001112355678889999999
Q ss_pred cCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC
Q 002209 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~ 797 (953)
+++ +|+|.+............|+.++++++.++ .+.++++++|||+||.+++.++ .+| +++++|+++|..+.
T Consensus 69 ~d~---~g~g~s~~~~~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~~~~~- 140 (208)
T 3trd_A 69 FNF---RGVGKSQGRYDNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAPPVFY- 140 (208)
T ss_dssp ECC---TTSTTCCSCCCTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESCCTTS-
T ss_pred Eec---CCCCCCCCCccchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEecccccc-
Confidence 555 566666444233456789999999999887 3457999999999999999999 666 89999999987521
Q ss_pred CCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002209 798 LTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (953)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (953)
.....+..+++|+|++||++|..+| ++.++++++++... ++++++++++|.+
T Consensus 141 -----------------------~~~~~~~~~~~p~l~i~g~~D~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~H~~ 192 (208)
T 3trd_A 141 -----------------------EGFASLTQMASPWLIVQGDQDEVVP--FEQVKAFVNQISSP---VEFVVMSGASHFF 192 (208)
T ss_dssp -----------------------GGGTTCCSCCSCEEEEEETTCSSSC--HHHHHHHHHHSSSC---CEEEEETTCCSSC
T ss_pred -----------------------CCchhhhhcCCCEEEEECCCCCCCC--HHHHHHHHHHccCc---eEEEEeCCCCCcc
Confidence 0112344568999999999999998 99988888877653 7899999999988
Q ss_pred CCcccHHHHHHHHHHHH
Q 002209 878 AARESIMHVLWETDRWL 894 (953)
Q Consensus 878 ~~~~~~~~~~~~i~~fl 894 (953)
... ...+.+.+.+||
T Consensus 193 ~~~--~~~~~~~i~~fl 207 (208)
T 3trd_A 193 HGR--LIELRELLVRNL 207 (208)
T ss_dssp TTC--HHHHHHHHHHHH
T ss_pred ccc--HHHHHHHHHHHh
Confidence 532 356666666665
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.6e-21 Score=202.75 Aligned_cols=238 Identities=20% Similarity=0.191 Sum_probs=157.0
Q ss_pred eEEEEEEc-CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 639 KELIKYQR-KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 639 ~~~~~~~~-~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
.+.+++.+ .+|..+.+++|+|+++++.+ ++|+||++||+..... .+.... .....+++.||+|+.
T Consensus 17 ~~~~~~~s~~~g~~~~~~v~~P~~~~~~~--~~p~vv~lHG~~~~~~-----------~~~~~~-~~~~~~~~~g~~vv~ 82 (280)
T 3i6y_A 17 HKQYSHVSNTLNCAMRFAIYLPPQASTGA--KVPVLYWLSGLTCSDE-----------NFMQKA-GAQRLAAELGIAIVA 82 (280)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGGTTC--CEEEEEEECCTTCCSS-----------HHHHHS-CCHHHHHHHTCEEEE
T ss_pred EEEEEEeccccCCeeEEEEEeCCCCCCCC--CccEEEEecCCCCChh-----------HHhhcc-cHHHHHhhCCeEEEE
Confidence 45566654 57889999999999865433 5999999999642211 111000 123456678999999
Q ss_pred cCCCCCC-----------CCCChhhh----------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002209 718 GPTTPII-----------GEGDEEAN----------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (953)
Q Consensus 718 ~~~~~~~-----------G~G~~~~~----------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (953)
++.++.. |.|.++.. ..+.....+++ ++++.+...+ +++++|+|||+||++|+.+
T Consensus 83 pd~~~~g~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~i~l~G~S~GG~~a~~~ 158 (280)
T 3i6y_A 83 PDTSPRGEGVADDEGYDLGQGAGFYVNATQAPWNRHYQMYDYVVNEL---PELIESMFPV-SDKRAIAGHSMGGHGALTI 158 (280)
T ss_dssp ECSSCCSTTCCCCSSTTSSTTCCTTCBCCSTTGGGTCBHHHHHHTHH---HHHHHHHSSE-EEEEEEEEETHHHHHHHHH
T ss_pred eCCcccccccCcccccccccCccccccccCCCccchhhHHHHHHHHH---HHHHHHhCCC-CCCeEEEEECHHHHHHHHH
Confidence 7753210 11221110 01222333343 3445444434 5799999999999999999
Q ss_pred HHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCC--CcEEEEEeCCCCCCCCchHH-HHH
Q 002209 777 LAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLK--KPILLVHGEEDNNSGTLTMQ-SDR 853 (953)
Q Consensus 777 a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~P~Li~~G~~D~~v~~~~~~-~~~ 853 (953)
+.++|++|+++|+++|+++....++...............+...+|...+.+++ +|+||+||+.|.+++ .+. +++
T Consensus 159 a~~~p~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~--~~~~~~~ 236 (280)
T 3i6y_A 159 ALRNPERYQSVSAFSPINNPVNCPWGQKAFTAYLGKDTDTWREYDASLLMRAAKQYVPALVDQGEADNFLA--EQLKPEV 236 (280)
T ss_dssp HHHCTTTCSCEEEESCCCCGGGSHHHHHHHHHHHCSCGGGTGGGCHHHHHHHCSSCCCEEEEEETTCTTHH--HHTCHHH
T ss_pred HHhCCccccEEEEeCCccccccCchHHHHHHHhcCCchHHHHhcCHHHHHHhcCCCccEEEEEeCCCcccc--chhhHHH
Confidence 999999999999999987643222110000000001122233455655555554 899999999999987 554 899
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
+++++++.+++++++++||++|.+. ........+++|+.++|+
T Consensus 237 ~~~~l~~~g~~~~~~~~~g~~H~~~---~~~~~~~~~l~~~~~~l~ 279 (280)
T 3i6y_A 237 LEAAASSNNYPLELRSHEGYDHSYY---FIASFIEDHLRFHSNYLN 279 (280)
T ss_dssp HHHHHHHTTCCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCceEEEeCCCCccHH---HHHHhHHHHHHHHHhhcc
Confidence 9999999999999999999999863 345667888999999874
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=202.49 Aligned_cols=239 Identities=17% Similarity=0.119 Sum_probs=164.4
Q ss_pred CCCceEEEEEEcCCCcEEEEEEEcCCCCC-CCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCc
Q 002209 635 ASLQKELIKYQRKDGVQLSATLYLPPGYD-PSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (953)
Q Consensus 635 ~~~~~~~~~~~~~dg~~~~~~l~~P~~~~-~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (953)
...+.+.+.|...+|..+...+| |+... ....++.|+||++||+.+.... .......+..|+++||
T Consensus 15 ~~~~~~~v~~~~~~g~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~~~------------~~~~~~~~~~l~~~G~ 81 (283)
T 3bjr_A 15 LYFQGMQVIKQKLTATCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTHIP------------VAQAESLAMAFAGHGY 81 (283)
T ss_dssp --CCSSEEEEEECTTSSCEEEEE-EC--------CCEEEEEEECCSTTTCCC------------HHHHHHHHHHHHTTTC
T ss_pred cCCCCcceEEeecCCCceeEEEe-cCCccccccCCCCcEEEEECCCccccCC------------ccccHHHHHHHHhCCc
Confidence 33456678888889988888899 76421 0012358999999996432110 0001234566788999
Q ss_pred EEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCCc-------
Q 002209 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPHL------- 783 (953)
Q Consensus 714 ~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~~------- 783 (953)
.|+.++++ |.|.+. ........|+.++++++.+.. .+|+++++|+||||||.+++.++.++|+.
T Consensus 82 ~v~~~d~~---g~~~~~---~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~ 155 (283)
T 3bjr_A 82 QAFYLEYT---LLTDQQ---PLGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNV 155 (283)
T ss_dssp EEEEEECC---CTTTCS---SCBTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTC
T ss_pred EEEEEecc---CCCccc---cCchhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCC
Confidence 99997765 444320 012345678888999988753 46778999999999999999999999877
Q ss_pred ------ccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHH
Q 002209 784 ------FCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (953)
Q Consensus 784 ------~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~ 857 (953)
++++|+.+|+.+.... +.............+...++...+.++++|+|++||++|..+| +.++.++++.
T Consensus 156 ~~~~~~~~~~v~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~p--~~~~~~~~~~ 230 (283)
T 3bjr_A 156 TPAMLKPNNVVLGYPVISPLLG---FPKDDATLATWTPTPNELAADQHVNSDNQPTFIWTTADDPIVP--ATNTLAYATA 230 (283)
T ss_dssp CHHHHCCSSEEEESCCCCTTSB---C--------CCCCCGGGGCGGGSCCTTCCCEEEEEESCCTTSC--THHHHHHHHH
T ss_pred CcCCCCccEEEEcCCccccccc---cccccchHHHHHHHhHhcCHHHhccCCCCCEEEEEcCCCCCCC--hHHHHHHHHH
Confidence 8999999998763211 1000000000000123456777778889999999999999998 9999999999
Q ss_pred HHhCCCcEEEEEeCCCCccCCCcc------------cHHHHHHHHHHHHHHh
Q 002209 858 LKGHGALCRLVILPFESHGYAARE------------SIMHVLWETDRWLQKY 897 (953)
Q Consensus 858 l~~~g~~~~~~~~~~~~H~~~~~~------------~~~~~~~~i~~fl~~~ 897 (953)
++..+.+++++++++++|.+.... ....+.+.+.+||+++
T Consensus 231 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 282 (283)
T 3bjr_A 231 LATAKIPYELHVFKHGPHGLALANAQTAWKPDANQPHVAHWLTLALEWLADN 282 (283)
T ss_dssp HHHTTCCEEEEEECCCSHHHHHHHHHHSCC-------CCHHHHHHHHHHHHT
T ss_pred HHHCCCCeEEEEeCCCCcccccccccccccccccchhHHHHHHHHHHHHhhc
Confidence 999999999999999999764221 1246778888888763
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-20 Score=201.62 Aligned_cols=221 Identities=16% Similarity=0.069 Sum_probs=154.4
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEEcCCCCCCCCCCh
Q 002209 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDE 729 (953)
Q Consensus 651 ~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~ 729 (953)
.+.+++|.|++ .++.|+||++|||.+..+. ...+ ......|++ .||+|+.++++...+.
T Consensus 66 ~i~~~~~~p~~-----~~~~p~vv~~HGGg~~~g~--------~~~~----~~~~~~la~~~g~~vv~~dyr~~p~~--- 125 (322)
T 3fak_A 66 GCAAEWVRAPG-----CQAGKAILYLHGGGYVMGS--------INTH----RSMVGEISRASQAAALLLDYRLAPEH--- 125 (322)
T ss_dssp TEEEEEEECTT-----CCTTCEEEEECCSTTTSCC--------HHHH----HHHHHHHHHHHTSEEEEECCCCTTTS---
T ss_pred CeEEEEEeCCC-----CCCccEEEEEcCCccccCC--------hHHH----HHHHHHHHHhcCCEEEEEeCCCCCCC---
Confidence 38899999975 2358999999997533211 1111 123445565 6999999887643221
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc----ccEEEEcccCCCCCCCCcCccc
Q 002209 730 EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL----FCCGIARSGAYNRTLTPFGFQN 805 (953)
Q Consensus 730 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~~~~d~~~~~~~~~~ 805 (953)
.+...++|+.++++|+.++ .+|++||+|+|+|+||++|+.++.+.++. ++++|+++|+++.......+..
T Consensus 126 -----~~~~~~~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~ 199 (322)
T 3fak_A 126 -----PFPAAVEDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFKT 199 (322)
T ss_dssp -----CTTHHHHHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTHHHH
T ss_pred -----CCCcHHHHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCCcCHHH
Confidence 2356779999999999988 57899999999999999999999876554 9999999999875432111100
Q ss_pred ---------ccchhhhhHHHHH--------hcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002209 806 ---------EDRTLWEATSTYV--------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (953)
Q Consensus 806 ---------~~~~~~~~~~~~~--------~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (953)
.....| ....|. ..+|+...-+...|+||+||+.|.+ ..++.+++++|+..|++++++
T Consensus 200 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~~----~~~~~~~~~~l~~~g~~~~~~ 274 (322)
T 3fak_A 200 RAEADPMVAPGGINK-MAARYLNGADAKHPYASPNFANLKGLPPLLIHVGRDEVL----LDDSIKLDAKAKADGVKSTLE 274 (322)
T ss_dssp TTTTCCSCCSSHHHH-HHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEETTSTT----HHHHHHHHHHHHHTTCCEEEE
T ss_pred hCccCcccCHHHHHH-HHHHhcCCCCCCCcccCCCcccccCCChHhEEEcCcCcc----HHHHHHHHHHHHHcCCCEEEE
Confidence 000000 011111 1244432222235999999999975 568899999999999999999
Q ss_pred EeCCCCccCCC----cccHHHHHHHHHHHHHHhccCCC
Q 002209 869 ILPFESHGYAA----RESIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 869 ~~~~~~H~~~~----~~~~~~~~~~i~~fl~~~l~~~~ 902 (953)
+||+++|++.. .+....+++.+.+||.++++...
T Consensus 275 ~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~~ 312 (322)
T 3fak_A 275 IWDDMIHVWHAFHPMLPEGKQAIVRVGEFMREQWAALA 312 (322)
T ss_dssp EETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC--
T ss_pred EeCCceeehhhccCCCHHHHHHHHHHHHHHHHHHhcch
Confidence 99999998742 33467888999999999997543
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=201.97 Aligned_cols=240 Identities=17% Similarity=0.177 Sum_probs=152.9
Q ss_pred EEEEEE-cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEc
Q 002209 640 ELIKYQ-RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (953)
Q Consensus 640 ~~~~~~-~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (953)
+.+++. ...|..+.+.+|+|+++.. +++|+||++||+..... .+... ......++++||+|+.+
T Consensus 17 ~~~~~~s~~~~~~~~~~v~~P~~~~~---~~~p~vv~lHG~~~~~~-----------~~~~~-~~~~~~~~~~g~~vv~~ 81 (282)
T 3fcx_A 17 KVFEHDSVELNCKMKFAVYLPPKAET---GKCPALYWLSGLTCTEQ-----------NFISK-SGYHQSASEHGLVVIAP 81 (282)
T ss_dssp EEEEEEETTTTEEEEEEEEECGGGGT---SCEEEEEEECCTTCCSH-----------HHHHH-SCCHHHHHHHTCEEEEE
T ss_pred EEEEEEchhcCCeeEEEEEcCCCCCC---CCCCEEEEEcCCCCCcc-----------chhhc-chHHHHhhcCCeEEEEe
Confidence 444454 4578899999999987543 35999999999742211 01000 01135677899999998
Q ss_pred CC--CCCCCCC----------Chhh---hh-hhHH--HHHH-HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002209 719 PT--TPIIGEG----------DEEA---ND-RFVE--QLVA-CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (953)
Q Consensus 719 ~~--~~~~G~G----------~~~~---~~-~~~~--~~~~-D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (953)
++ +|..+.| .+.. .. .+.. .... +...+++++.+...+|++||+|+|+||||++|+.++.+
T Consensus 82 d~~~rG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 161 (282)
T 3fcx_A 82 DTSPRGCNIKGEDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALK 161 (282)
T ss_dssp CSCSSCCCC--------CCCCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHHT
T ss_pred ccccCccccccccccccccCCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHHh
Confidence 86 3332211 1100 00 1100 1122 22344555555555888999999999999999999999
Q ss_pred CCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccC---CCCCcEEEEEeCCCCCCCCchHH--HHHH
Q 002209 780 APHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSAN---KLKKPILLVHGEEDNNSGTLTMQ--SDRF 854 (953)
Q Consensus 780 ~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~---~i~~P~Li~~G~~D~~v~~~~~~--~~~~ 854 (953)
+|++|+++|+++|+.+....++...............+...+|...+. .+++|+|++||+.|.++| ..+ +.++
T Consensus 162 ~p~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~--~~~~~~~~~ 239 (282)
T 3fcx_A 162 NPGKYKSVSAFAPICNPVLCPWGKKAFSGYLGTDQSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLL--DGQLLPDNF 239 (282)
T ss_dssp STTTSSCEEEESCCCCGGGSHHHHHHHHHHHC---CCGGGGCHHHHHTTCC---CCEEEEEETTCHHHH--TTSSCHHHH
T ss_pred CcccceEEEEeCCccCcccCchhHHHHHHhcCCchhhhhhcCHHHHHHhcccCCCcEEEEcCCCCcccc--cchhhHHHH
Confidence 999999999999987643221110000000000111122334444333 447899999999999986 444 6699
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 855 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
++++++.+.+++++++|+++|.+. .....+...++|+.++|+
T Consensus 240 ~~~l~~~g~~~~~~~~~g~~H~~~---~~~~~~~~~~~~~~~~l~ 281 (282)
T 3fcx_A 240 IAACTEKKIPVVFRLQEDYDHSYY---FIATFITDHIRHHAKYLN 281 (282)
T ss_dssp HHHHHHTTCCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCceEEEECCCCCcCHH---HHHhhhHHHHHHHHHhhc
Confidence 999999999999999999999873 244567788899998874
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-20 Score=200.69 Aligned_cols=238 Identities=18% Similarity=0.193 Sum_probs=156.5
Q ss_pred eEEEEEEc-CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 639 KELIKYQR-KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 639 ~~~~~~~~-~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
.+.+++.+ ..|.++.+.+|+|+++++.+ ++|+||++||+..... .+... ......+++.||+|+.
T Consensus 15 ~~~~~~~s~~~g~~~~~~v~~P~~~~~~~--~~P~vv~lHG~~~~~~-----------~~~~~-~~~~~~~~~~g~~vv~ 80 (280)
T 3ls2_A 15 HKQYTHSAVSTHCTMRFAVFLPPGASESN--KVPVLYWLSGLTCTDE-----------NFMQK-AGAFKKAAELGIAIVA 80 (280)
T ss_dssp EEEEEEEETTTTEEEEEEEEECTTCBTTB--CEEEEEEECCTTCCSH-----------HHHHH-SCCHHHHHHHTCEEEE
T ss_pred EEEEEEechhcCCceEEEEEcCCCCCCCC--CcCEEEEeCCCCCChh-----------hhhcc-hhHHHHHhhCCeEEEE
Confidence 45666655 57889999999999876433 5999999999642211 01000 0123456678999999
Q ss_pred cCCCCC--C---------CCCChhhh----------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002209 718 GPTTPI--I---------GEGDEEAN----------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (953)
Q Consensus 718 ~~~~~~--~---------G~G~~~~~----------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (953)
++..+. . |.|.++.. ..+......++. .++.+...+ .++++|+|+||||++|+.+
T Consensus 81 ~d~~~~g~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~-~~~~~l~G~S~GG~~a~~~ 156 (280)
T 3ls2_A 81 PDTSPRGDNVPNEDSYDFAQGAGFYVNATQAPYNTHFNMYDYVVNELP---ALIEQHFPV-TSTKAISGHSMGGHGALMI 156 (280)
T ss_dssp CCSSCCSTTSCCCSCTTSSTTCCTTCBCCSTTTTTTCBHHHHHHTHHH---HHHHHHSSE-EEEEEEEEBTHHHHHHHHH
T ss_pred eCCcccccccccccccccccCCccccccccccccccccHHHHHHHHHH---HHHHhhCCC-CCCeEEEEECHHHHHHHHH
Confidence 775311 0 12221110 022233333433 444444333 4799999999999999999
Q ss_pred HHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCC----CCcEEEEEeCCCCCCCCchHH-H
Q 002209 777 LAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL----KKPILLVHGEEDNNSGTLTMQ-S 851 (953)
Q Consensus 777 a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i----~~P~Li~~G~~D~~v~~~~~~-~ 851 (953)
+.++|++|+++++++|+.+....++...............+...+|...+.++ ..|+|++||+.|.+|+ .+. +
T Consensus 157 a~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~--~~~~~ 234 (280)
T 3ls2_A 157 ALKNPQDYVSASAFSPIVNPINCPWGVKAFTGYLGADKTTWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLD--EQLKP 234 (280)
T ss_dssp HHHSTTTCSCEEEESCCSCGGGSHHHHHHHHHHHCSCGGGTGGGCHHHHHHTCCGGGCCCEEEEEETTCTTCC--CCCCH
T ss_pred HHhCchhheEEEEecCccCcccCcchhhHHHhhcCchHHHHHhcCHHHHHHhccccCCCcEEEEEeCCCcccC--CchhH
Confidence 99999999999999998764332211000000001111223344555555555 4599999999999997 644 8
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
++++++|++.+++++++++|+++|.+. ........+++|+.++|+
T Consensus 235 ~~~~~~l~~~g~~~~~~~~~g~~H~~~---~~~~~~~~~~~~~~~~l~ 279 (280)
T 3ls2_A 235 QNLVAVAKQKDYPLTLEMQTGYDHSYF---FISSFIDQHLVFHHQYLS 279 (280)
T ss_dssp HHHHHHHHHHTCCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCceEEEeCCCCCchh---hHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999863 234667788999999874
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-18 Score=187.11 Aligned_cols=260 Identities=12% Similarity=0.032 Sum_probs=179.7
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC-CceeecccCCCcc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPLFQSPDIY 241 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~~~~~~ 241 (953)
..|++||+.+ ++.+.+... ...+..+.|||||++|++.. ...|+++|+++ ++..++......
T Consensus 22 ~~i~~~d~~~----~~~~~~~~~--~~~v~~~~~spdg~~l~~~~----------~~~i~~~d~~~~~~~~~~~~~~~~- 84 (297)
T 2ojh_A 22 SSIEIFNIRT----RKMRVVWQT--PELFEAPNWSPDGKYLLLNS----------EGLLYRLSLAGDPSPEKVDTGFAT- 84 (297)
T ss_dssp EEEEEEETTT----TEEEEEEEE--SSCCEEEEECTTSSEEEEEE----------TTEEEEEESSSCCSCEECCCTTCC-
T ss_pred eeEEEEeCCC----CceeeeccC--CcceEeeEECCCCCEEEEEc----------CCeEEEEeCCCCCCceEecccccc-
Confidence 5799999854 445555443 24688999999999999964 35899999999 888877654321
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 321 (953)
..+..+.|+|||+.|++.... .+ +...||.+++
T Consensus 85 --~~~~~~~~spdg~~l~~~~~~--------------------------------------~~-------~~~~l~~~~~ 117 (297)
T 2ojh_A 85 --ICNNDHGISPDGALYAISDKV--------------------------------------EF-------GKSAIYLLPS 117 (297)
T ss_dssp --CBCSCCEECTTSSEEEEEECT--------------------------------------TT-------SSCEEEEEET
T ss_pred --ccccceEECCCCCEEEEEEeC--------------------------------------CC-------CcceEEEEEC
Confidence 115689999999999987210 01 3468999998
Q ss_pred -CCceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002209 322 -DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 322 -~g~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
+++.+.+.....+..++|||||++|+|+..... ...||.++++++..+.+.... ..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~----------~~~l~~~~~~~~~~~~~~~~~-------------~~ 174 (297)
T 2ojh_A 118 TGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQ----------VFDIYSMDIDSGVETRLTHGE-------------GR 174 (297)
T ss_dssp TCCCCEECCSSSSEEEEEECTTSSEEEEEEEETT----------EEEEEEEETTTCCEEECCCSS-------------SC
T ss_pred CCCceEEeecCCCccceEECCCCCEEEEEECCCC----------ceEEEEEECCCCcceEcccCC-------------Cc
Confidence 777777776655777899999999998774321 114555556666666655432 23
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEeccc--
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT-- 478 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~-- 478 (953)
+..+.|+|||+.+++.... +....+|.++. +++....+......+..+.|+|||++|++......
T Consensus 175 ~~~~~~s~dg~~l~~~~~~----------~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 175 NDGPDYSPDGRWIYFNSSR----------TGQMQIWRVRV---DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp EEEEEECTTSSEEEEEECT----------TSSCEEEEEET---TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred cccceECCCCCEEEEEecC----------CCCccEEEECC---CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCC
Confidence 3578999999988776211 23456777774 56666667666666777999999999999876532
Q ss_pred -----CceEEEEEcCCCCCCCcEEeec--CCCccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 479 -----RRTRTWVISPGSKDVAPRILFD--RSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 479 -----~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
....|++++++++ +...+.. .....+.. +.|+|||++|++...+
T Consensus 242 ~~~~~~~~~l~~~d~~~~--~~~~~~~~~~~~~~~~~------~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGG--NVETLFDLFGGQGTMNS------PNWSPDGDEFAYVRYF 292 (297)
T ss_dssp SCCSSEEEEEEEEETTSC--SCEEEEEEEESTTTSCS------CCBCTTSSEEEEEEEC
T ss_pred cccccCceEEEEEecCCC--CceeeeccCCCCccccc------ceECCCCCEEEEEEec
Confidence 2257999999885 3333332 11122222 6799999999988753
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-19 Score=196.65 Aligned_cols=332 Identities=16% Similarity=0.138 Sum_probs=188.4
Q ss_pred hhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCce
Q 002209 100 PEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE 179 (953)
Q Consensus 100 ~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~ 179 (953)
..+++++..+.+..++| ||++|+|+... .+...+ ....+||++++.+ ++.
T Consensus 6 ~~~~~l~~~~~~~~~~~--dG~~i~~~~~~-------------------~~~~~~-----~~~~~l~~~d~~~----~~~ 55 (347)
T 2gop_A 6 WNEKTFAKFAYLSDPRT--KGELVAYVLTK-------------------ANLKDN-----KYENTIVIENLKN----NAR 55 (347)
T ss_dssp ----CCCCSCEEEEEEE--ETTEEEEEEEE-------------------EETTTT-----EEEEEEEEEETTT----CCE
T ss_pred CCcccceeeEEcccceE--CCcEEEEEEee-------------------cCcccC-----CccceEEEEeCCC----Cce
Confidence 34566677777788899 99999998763 111111 1235899999843 445
Q ss_pred eeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEE
Q 002209 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (953)
Q Consensus 180 ~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~ 259 (953)
++| ..+..|.|||||++|||..... +++..+||++++++|+.++++..+. +..+.|||||+.|+
T Consensus 56 ~~l------~~~~~~~~SpDg~~la~~~~~~----~~~~~~l~~~~~~~g~~~~l~~~~~------~~~~~wspdg~~l~ 119 (347)
T 2gop_A 56 RFI------ENATMPRISPDGKKIAFMRANE----EKKVSEIWVADLETLSSKKILEAKN------IRSLEWNEDSRKLL 119 (347)
T ss_dssp EEE------ESCEEEEECTTSSEEEEEEEET----TTTEEEEEEEETTTTEEEEEEEESE------EEEEEECTTSSEEE
T ss_pred EEc------ccCCCeEECCCCCEEEEEEecc----CCCcceEEEEECCCCceEEEEcCCC------ccceeECCCCCEEE
Confidence 555 2367899999999999987532 2356789999999999988876543 56899999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCCCccccccc
Q 002209 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDP 339 (953)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~~~~~~ 339 (953)
|........ ... ..+..+.+
T Consensus 120 ~~~~~~~~~------------------------------------------------------~~~------~~~~~~~~ 139 (347)
T 2gop_A 120 IVGFKRRED------------------------------------------------------EDF------IFEDDVPA 139 (347)
T ss_dssp EEEECCCC---------------------------------------------------------------------CCC
T ss_pred EEEccCCCc------------------------------------------------------CCc------EEEcccce
Confidence 884221000 000 00111222
Q ss_pred CCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002209 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (953)
Q Consensus 340 SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~ 418 (953)
..||....... . ..|++|++++++. +.++. + .+..+.||||| ++|...
T Consensus 140 ~~~g~~~~~~~-~-------------~~l~~~d~~~~~~~~~l~~-~--------------~~~~~~~spdg--~~~~~~ 188 (347)
T 2gop_A 140 WFDDLGFFDGE-K-------------TTFWIFDTESEEVIEEFEK-P--------------RFSSGIWHRDK--IVVNVP 188 (347)
T ss_dssp C---------C-E-------------EEEEEEETTTTEEEEEEEE-E--------------TTCEEEEETTE--EEEEEE
T ss_pred eecCcccccCc-c-------------ceEEEEECCCCeEEeeecC-C--------------CcccccCCCCe--EEEEEe
Confidence 33333222111 1 1456666655554 44433 1 11345666666 554432
Q ss_pred eccCCCccccccc-CCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEeccc----CceEEEEEcCCCCCC
Q 002209 419 TQDGGDAKVEVTP-RDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT----RRTRTWVISPGSKDV 493 (953)
Q Consensus 419 ~~~~~~~~~~~~~-~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~----~~~~l~~~d~~~~~~ 493 (953)
...... ... ...||+++ +++.+.++.. ... ..+||||++|+|...... ...+||.++ ++
T Consensus 189 ~~~~~~----~~~~~~~l~~~d-----~~~~~~l~~~-~~~--~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~-- 252 (347)
T 2gop_A 189 HREIIP----QYFKFWDIYIWE-----DGKEEKMFEK-VSF--YAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GK-- 252 (347)
T ss_dssp CCCSSC----CSSCCEEEEEEE-----TTEEEEEEEE-ESE--EEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SS--
T ss_pred cccccc----cccccccEEEeC-----CCceEEeccC-cce--eeECCCCCEEEEEEccccCCccccceEEEEC--CC--
Confidence 110000 001 23566665 3445556554 333 334999999999875432 235899999 32
Q ss_pred CcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcc
Q 002209 494 APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKE 573 (953)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~ 573 (953)
+.+.++......+.. .+.|+ || +++..... ...+|| ++ +++.++++..++.
T Consensus 253 ~~~~l~~~~~~~~~~-----~~~~s-dg--~~~~~~~~------------------~~~~l~-~~--~g~~~~~~~~~~~ 303 (347)
T 2gop_A 253 EVMGILDEVDRGVGQ-----AKIKD-GK--VYFTLFEE------------------GSVNLY-IW--DGEIKPIAKGRHW 303 (347)
T ss_dssp CEEESSTTCCSEEEE-----EEEET-TE--EEEEEEET------------------TEEEEE-EE--SSSEEEEECSSSE
T ss_pred ceEeccccCCcccCC-----ccEEc-Cc--EEEEEecC------------------CcEEEE-Ec--CCceEEEecCCCe
Confidence 344444332111110 15688 87 55544221 133577 77 5677777665432
Q ss_pred cceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEecCCCCC
Q 002209 574 KYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPY 631 (953)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~~~~ 631 (953)
+. ..+|++ .+++..++...|.++|.++ |+.++||.+|..+
T Consensus 304 -----v~-------~~~~s~---~~~~~~~~~~~~~~l~~~~---g~~~~lt~~n~~~ 343 (347)
T 2gop_A 304 -----IM-------GFDVDE---IVVYLKETATRLRELFTWD---GEEKQLTDYNDPI 343 (347)
T ss_dssp -----EE-------EEEESS---SEEEEEECSSSCCEEEEES---SSEEECCCTTSTT
T ss_pred -----EE-------eeeeeC---cEEEEEcCCCChHHheEeC---CcEEEeccccHhH
Confidence 11 134666 5788888888888999987 7788899887643
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-19 Score=183.34 Aligned_cols=210 Identities=13% Similarity=0.084 Sum_probs=157.0
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
..+.+++++.+| .+.++++.|++..+ .+.|+||++||++...+. ............|+++||.|+.
T Consensus 9 ~~~~~~~~~~~g-~~~~~~~~p~~~~~---~~~~~vv~~HG~~~~~~~----------~~~~~~~~~~~~l~~~g~~v~~ 74 (220)
T 2fuk_A 9 ESAALTLDGPVG-PLDVAVDLPEPDVA---VQPVTAIVCHPLSTEGGS----------MHNKVVTMAARALRELGITVVR 74 (220)
T ss_dssp SCEEEEEEETTE-EEEEEEECCCTTSC---CCSEEEEEECSCTTTTCS----------TTCHHHHHHHHHHHTTTCEEEE
T ss_pred cceEEEEeCCCC-eEEEEEEeCCCCCc---cccCEEEEECCCCCcCCc----------ccchHHHHHHHHHHHCCCeEEE
Confidence 467889999898 89999999975111 238999999996422110 0001112345667889999999
Q ss_pred cCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC
Q 002209 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~ 797 (953)
+++ +|+|.+............|+.++++++.++. +.++++++|||+||.+++.++.++ .++++|+++|..+..
T Consensus 75 ~d~---~g~g~s~~~~~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~~ 147 (220)
T 2fuk_A 75 FNF---RSVGTSAGSFDHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRW 147 (220)
T ss_dssp ECC---TTSTTCCSCCCTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTB
T ss_pred Eec---CCCCCCCCCcccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccch
Confidence 655 5666664443344567899999999998874 567999999999999999999987 799999999875431
Q ss_pred CCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002209 798 LTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (953)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (953)
. +.. +. ...|+|++||++|..+| ++.+.++++.++ .+++++++++++|.+
T Consensus 148 ~---------------------~~~---~~-~~~p~l~i~g~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~H~~ 197 (220)
T 2fuk_A 148 D---------------------FSD---VQ-PPAQWLVIQGDADEIVD--PQAVYDWLETLE---QQPTLVRMPDTSHFF 197 (220)
T ss_dssp C---------------------CTT---CC-CCSSEEEEEETTCSSSC--HHHHHHHHTTCS---SCCEEEEETTCCTTC
T ss_pred h---------------------hhh---cc-cCCcEEEEECCCCcccC--HHHHHHHHHHhC---cCCcEEEeCCCCcee
Confidence 1 011 11 25789999999999998 888888887774 347899999999998
Q ss_pred CCcccHHHHHHHHHHHHHHhccC
Q 002209 878 AARESIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 878 ~~~~~~~~~~~~i~~fl~~~l~~ 900 (953)
.. ....+.+.+.+||.+++..
T Consensus 198 ~~--~~~~~~~~i~~~l~~~l~~ 218 (220)
T 2fuk_A 198 HR--KLIDLRGALQHGVRRWLPA 218 (220)
T ss_dssp TT--CHHHHHHHHHHHHGGGCSS
T ss_pred hh--hHHHHHHHHHHHHHHHhhc
Confidence 54 3567889999999998853
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-20 Score=197.73 Aligned_cols=235 Identities=14% Similarity=0.125 Sum_probs=154.9
Q ss_pred eEEEEEE-cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 639 KELIKYQ-RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 639 ~~~~~~~-~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
.+.+++. ...|..+.+.+|+|+++. .+++|+||++||+..... .+.... .....+.+.||+|+.
T Consensus 15 ~~~~~~~s~~~g~~~~~~v~~P~~~~---~~~~p~vv~lHG~~~~~~-----------~~~~~~-~~~~~~~~~g~~vv~ 79 (278)
T 3e4d_A 15 QGVFSHQSETLKSEMTFAVYVPPKAI---HEPCPVVWYLSGLTCTHA-----------NVMEKG-EYRRMASELGLVVVC 79 (278)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGG---TSCEEEEEEECCTTCCSH-----------HHHHHS-CCHHHHHHHTCEEEE
T ss_pred EEEEEEeccccCCcceEEEEcCCCCC---CCCCCEEEEEcCCCCCcc-----------chhhcc-cHHHHHhhCCeEEEe
Confidence 4555564 457889999999998754 235999999999642211 010000 013344567999999
Q ss_pred cCCCCCCCCCChhhhh-------------------------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHH
Q 002209 718 GPTTPIIGEGDEEAND-------------------------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFM 772 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~-------------------------~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~ 772 (953)
++++ |+|.+.... .+...... ++++++.+...+|+++++|+||||||.+
T Consensus 80 ~d~~---g~G~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~~i~l~G~S~GG~~ 153 (278)
T 3e4d_A 80 PDTS---PRGNDVPDELTNWQMGKGAGFYLDATEEPWSEHYQMYSYVTE---ELPALIGQHFRADMSRQSIFGHSMGGHG 153 (278)
T ss_dssp CCSS---CCSTTSCCCTTCTTSBTTBCTTSBCCSTTTTTTCBHHHHHHT---HHHHHHHHHSCEEEEEEEEEEETHHHHH
T ss_pred cCCc---ccCcccccccccccccCCccccccCCcCcccchhhHHHHHHH---HHHHHHHhhcCCCcCCeEEEEEChHHHH
Confidence 7664 333321100 11122222 3555666665678899999999999999
Q ss_pred HHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCC--CCcEEEEEeCCCCCCCCchHH
Q 002209 773 TANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL--KKPILLVHGEEDNNSGTLTMQ 850 (953)
Q Consensus 773 a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i--~~P~Li~~G~~D~~v~~~~~~ 850 (953)
|+.++.++|++|+++++++|+++....++...............+...+|...+.++ .+|+|++||+.|..++ ...
T Consensus 154 a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~--~~~ 231 (278)
T 3e4d_A 154 AMTIALKNPERFKSCSAFAPIVAPSSADWSEPALEKYLGADRAAWRRYDACSLVEDGARFPEFLIDQGKADSFLE--KGL 231 (278)
T ss_dssp HHHHHHHCTTTCSCEEEESCCSCGGGCTTTHHHHHHHHCSCGGGGGGGCHHHHHHTTCCCSEEEEEEETTCTTHH--HHT
T ss_pred HHHHHHhCCcccceEEEeCCcccccCCccchhhHHHhcCCcHHHHHhcChhhHhhcCCCCCcEEEEecCCCcccc--cch
Confidence 999999999999999999998774433322110000000111222344555444444 4599999999999876 432
Q ss_pred -HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 851 -SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 851 -~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
+.++++++++.+.+++++++||++|.+. ........+++|+.++|+
T Consensus 232 ~~~~~~~~l~~~g~~~~~~~~~g~~H~~~---~~~~~~~~~l~~~~~~l~ 278 (278)
T 3e4d_A 232 RPWLFEEAIKGTDIGLTLRMHDRYDHSYY---FISTFMDDHLKWHAERLG 278 (278)
T ss_dssp CTHHHHHHHTTSSCEEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHcCCCceEEEeCCCCcCHH---HHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999863 234567788899988863
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-18 Score=202.24 Aligned_cols=334 Identities=12% Similarity=0.120 Sum_probs=218.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccc--------cccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceee
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELA--------RPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~ 181 (953)
.+..++|||||++|+....+....+++.. ........+.+.+++.........+.|.+|+.. + ...+.
T Consensus 223 ~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~--~--~~~~~ 298 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN--G--QLLQT 298 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--S--CEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC--C--cEEEE
Confidence 45678899999999988776433333322 122234456677766544434444678999973 2 33344
Q ss_pred eecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 182 l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
+.++ ...+...+|+|||+.|+.... ...|.+++.++.....+...... +..++|+|||+.|+..
T Consensus 299 ~~~h--~~~v~~~~~~~~~~~l~t~~~---------d~~i~~w~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~l~~~ 362 (577)
T 2ymu_A 299 LTGH--SSSVWGVAFSPDGQTIASASD---------DKTVKLWNRNGQHLQTLTGHSSS-----VWGVAFSPDGQTIASA 362 (577)
T ss_dssp ECCC--SSCEEEEEECTTSSEEEEEET---------TSCEEEEETTSCEEEEECCCSSC-----EEEEEECTTSSEEEEE
T ss_pred EecC--CCCeEEEEECCCCCEEEEEeC---------CCeEEEEeCCCCeeEEEeCCCCC-----EEEEEECCCCCEEEEE
Confidence 4432 246788999999999988652 44677778877766666543332 6689999999999876
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCC-ceeEeCCC-Cccccccc
Q 002209 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEIGPP-AVYTSLDP 339 (953)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g-~~~~l~~~-~~~~~~~~ 339 (953)
. ..+.+.+++.++ ....+... ..+..++|
T Consensus 363 ~-------------------------------------------------~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~ 393 (577)
T 2ymu_A 363 S-------------------------------------------------DDKTVKLWNRNGQLLQTLTGHSSSVRGVAF 393 (577)
T ss_dssp E-------------------------------------------------TTSEEEEEETTCCEEEEEECCSSCEEEEEE
T ss_pred e-------------------------------------------------CCCEEEEEcCCCCEEEEecCCCCCeEEEEE
Confidence 1 113455566644 34444444 67888999
Q ss_pred CCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002209 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (953)
Q Consensus 340 SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~ 419 (953)
||||++|+..+.+. .|.+|+.++...+.+..+. ..+..++|+||++.++..
T Consensus 394 s~dg~~l~~~~~d~-------------~v~~~~~~~~~~~~~~~~~-------------~~v~~~~~s~d~~~l~~~--- 444 (577)
T 2ymu_A 394 SPDGQTIASASDDK-------------TVKLWNRNGQLLQTLTGHS-------------SSVWGVAFSPDDQTIASA--- 444 (577)
T ss_dssp CTTSSCEEEEETTS-------------EEEEECTTCCEEEEEECCS-------------SCEEEEEECTTSSEEEEE---
T ss_pred CCCCCEEEEEeCCC-------------EEEEEeCCCCEEEEecCCC-------------CCeEEEEECCCCCEEEEE---
Confidence 99999999887443 8999998877666665432 234578999999977765
Q ss_pred ccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEee
Q 002209 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (953)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 499 (953)
+....+.+|++ ++.....+..+...+..++|||||+.|+....+. .+.+++.++ +.....
T Consensus 445 ----------~~d~~v~~w~~---~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~----~i~iw~~~~---~~~~~~ 504 (577)
T 2ymu_A 445 ----------SDDKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK----TVKLWNRNG---QLLQTL 504 (577)
T ss_dssp ----------ETTSEEEEEET---TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTS----EEEEEETTS---CEEEEE
T ss_pred ----------cCCCEEEEEEC---CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC----EEEEEcCCC---CEEEEE
Confidence 44567889985 5555556666777788899999999998876543 344555544 233333
Q ss_pred cCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeee
Q 002209 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (953)
Q Consensus 500 ~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~ 579 (953)
......+.. +.|||||++|+....+ ..|++||..+.....+...... +
T Consensus 505 ~~h~~~v~~------l~~s~dg~~l~s~~~d---------------------g~v~lwd~~~~~~~~~~~h~~~-----v 552 (577)
T 2ymu_A 505 TGHSSSVRG------VAFSPDGQTIASASDD---------------------KTVKLWNRNGQLLQTLTGHSSS-----V 552 (577)
T ss_dssp ECCSSCEEE------EEECTTSSCEEEEETT---------------------SEEEEECTTSCEEEEEECCSSC-----E
T ss_pred eCCCCCEEE------EEEcCCCCEEEEEECc---------------------CEEEEEeCCCCEEEEEcCCCCC-----E
Confidence 333333333 7899999999876532 2489999755444444433322 2
Q ss_pred EeeccCCccccccccCCEEEE
Q 002209 580 VALMSDQTEGDLYLNQLKILT 600 (953)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~ 600 (953)
.. ..|+|||+.|+.
T Consensus 553 ~~-------~~fs~dg~~l~s 566 (577)
T 2ymu_A 553 WG-------VAFSPDGQTIAS 566 (577)
T ss_dssp EE-------EEECTTSSCEEE
T ss_pred EE-------EEEcCCCCEEEE
Confidence 22 468999997764
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=214.52 Aligned_cols=248 Identities=15% Similarity=0.205 Sum_probs=172.7
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHH---HHHHHcCc
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV---LLWLARGF 713 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~la~~G~ 713 (953)
+..+.+.++..||.+|.+++|+|++. +++|+||++||...... ....+...+ ..... +.|+++||
T Consensus 23 ~~~~~v~i~~~DG~~L~~~~~~P~~~-----~~~P~vl~~hgyg~~~~----~~~~~~~~~---~~~~~~~~~~la~~Gy 90 (615)
T 1mpx_A 23 YIKREVMIPMRDGVKLHTVIVLPKGA-----KNAPIVLTRTPYDASGR----TERLASPHM---KDLLSAGDDVFVEGGY 90 (615)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTC-----CSEEEEEEEESSCHHHH----TCSSCCSSH---HHHSCGGGHHHHHTTC
T ss_pred CEEEEEEEECCCCCEEEEEEEeCCCC-----CCeeEEEEEcCCCCccc----ccccccccc---ccccchhHHHHHhCCe
Confidence 45678899999999999999999762 35899999997321100 000000000 00011 67899999
Q ss_pred EEEEcCCCCCCCCCChhhhh-----hhHH---HHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCCcc
Q 002209 714 AILGGPTTPIIGEGDEEAND-----RFVE---QLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (953)
Q Consensus 714 ~V~~~~~~~~~G~G~~~~~~-----~~~~---~~~~D~~~~~~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 784 (953)
+|+.+|++|..+.+...... .+.. ..++|+.++++||.++ ++.| .||+++|+||||++++.+++..|+.|
T Consensus 91 ~Vv~~D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l 169 (615)
T 1mpx_A 91 IRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPAL 169 (615)
T ss_dssp EEEEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTE
T ss_pred EEEEECCCCCCCCCCccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCce
Confidence 99997776554433322111 1122 6789999999999998 7776 59999999999999999999888999
Q ss_pred cEEEEcccCCCCCC-CCc---Cc-cc-----------------------cc----------------------chhhhh-
Q 002209 785 CCGIARSGAYNRTL-TPF---GF-QN-----------------------ED----------------------RTLWEA- 813 (953)
Q Consensus 785 ~a~v~~~~~~d~~~-~~~---~~-~~-----------------------~~----------------------~~~~~~- 813 (953)
+|+|+.++++|... ..+ +. .. .. ...|++
T Consensus 170 ~a~v~~~~~~d~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 249 (615)
T 1mpx_A 170 KVAVPESPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKL 249 (615)
T ss_dssp EEEEEESCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHH
T ss_pred EEEEecCCccccccccccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHHHHH
Confidence 99999999988322 111 00 00 00 000110
Q ss_pred ------HHHHHhcCcccccCC--CCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc---EEEEEeCCCCccCCC---
Q 002209 814 ------TSTYVEMSPFMSANK--LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL---CRLVILPFESHGYAA--- 879 (953)
Q Consensus 814 ------~~~~~~~sp~~~~~~--i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~---~~~~~~~~~~H~~~~--- 879 (953)
.+.|.+.||+.++++ |++|+|++||..|.+ + ..++.++|++|++.|++ +++++.|. +|....
T Consensus 250 ~~~~~~d~~w~~~Sp~~~~~~~~I~~P~Lii~G~~D~~-~--~~~~~~~~~aL~~~g~p~~~~~lvigp~-~H~~~~~~~ 325 (615)
T 1mpx_A 250 TEHAAYDAFWQEQALDKVMARTPLKVPTMWLQGLWDQE-D--MWGAIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDG 325 (615)
T ss_dssp HHTCSSCHHHHTTCHHHHHHTSCCCSCEEEEEETTCSS-C--SSHHHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCC
T ss_pred HhCCCcChhhhhcChhhhhhccCCCCCEEEeecccCcc-c--cccHHHHHHHHHhhcCCCcCCEEEECCC-CCCCccccc
Confidence 133456789889999 999999999999997 7 88999999999988653 89999998 696510
Q ss_pred ---------ccc-HHHHHHHHHHHHHHhccCC
Q 002209 880 ---------RES-IMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 880 ---------~~~-~~~~~~~i~~fl~~~l~~~ 901 (953)
.+. .....+.+++||++||+..
T Consensus 326 ~~~~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 357 (615)
T 1mpx_A 326 SALGALNFEGDTARQFRHDVLRPFFDQYLVDG 357 (615)
T ss_dssp SEETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred cccCccccCcccchhhhhhHHHHHHHHHhcCC
Confidence 111 1233677899999999865
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=201.25 Aligned_cols=236 Identities=17% Similarity=0.153 Sum_probs=166.0
Q ss_pred CCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcE
Q 002209 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (953)
Q Consensus 635 ~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (953)
..+..+.+++.+.||..+.++++.|++ .+ .++.|+||++||+.... ..+.......|+++||.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~~~~~~p~~-~~--~~~~p~vv~~hG~~~~~--------------~~~~~~~~~~l~~~G~~ 126 (367)
T 2hdw_A 64 AKVEHRKVTFANRYGITLAADLYLPKN-RG--GDRLPAIVIGGPFGAVK--------------EQSSGLYAQTMAERGFV 126 (367)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEEEESS-CC--SSCEEEEEEECCTTCCT--------------TSHHHHHHHHHHHTTCE
T ss_pred CCceeEEEEEecCCCCEEEEEEEeCCC-CC--CCCCCEEEEECCCCCcc--------------hhhHHHHHHHHHHCCCE
Confidence 345678899999999999999999986 22 23589999999963110 01111246678899999
Q ss_pred EEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcc
Q 002209 715 ILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (953)
Q Consensus 715 V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (953)
|+.+|+ +|+|.+.... ......+.|+.++++++.++..+|.++++++|||+||.+++.++.++| .++++|+.+
T Consensus 127 v~~~d~---~g~g~s~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~ 202 (367)
T 2hdw_A 127 TLAFDP---SYTGESGGQPRNVASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTST 202 (367)
T ss_dssp EEEECC---TTSTTSCCSSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEES
T ss_pred EEEECC---CCcCCCCCcCccccchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEec
Confidence 999665 5566553221 225678899999999999988888899999999999999999999997 599999998
Q ss_pred cCCCC-----CCCC--------------------------cC----cc---cccc-------------------------
Q 002209 792 GAYNR-----TLTP--------------------------FG----FQ---NEDR------------------------- 808 (953)
Q Consensus 792 ~~~d~-----~~~~--------------------------~~----~~---~~~~------------------------- 808 (953)
|+... .... .. .. ....
T Consensus 203 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (367)
T 2hdw_A 203 MYDMTRVMSKGYNDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGN 282 (367)
T ss_dssp CCCHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTC
T ss_pred cccccHHHhhhhccccchHHHHHHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccc
Confidence 65210 0000 00 00 0000
Q ss_pred -hhhhhHHHHHhcCcccccCCCC-CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHH
Q 002209 809 -TLWEATSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886 (953)
Q Consensus 809 -~~~~~~~~~~~~sp~~~~~~i~-~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~ 886 (953)
........+...++...+.+++ +|+|++||++|. + +..+.+++++ .+.+++++++|+++|..........+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~i~~~PvLii~G~~D~--~--~~~~~~~~~~---~~~~~~~~~~~g~gH~~~~~~~~~~~ 355 (367)
T 2hdw_A 283 AWTMTTPLSFMNMPILTYIKEISPRPILLIHGERAH--S--RYFSETAYAA---AAEPKELLIVPGASHVDLYDRLDRIP 355 (367)
T ss_dssp CCBTTTHHHHTTSCSCTTGGGGTTSCEEEEEETTCT--T--HHHHHHHHHH---SCSSEEEEEETTCCTTHHHHCTTTSC
T ss_pred hhhhhhHHHhcCCChhHhHHhhcCCceEEEecCCCC--C--HHHHHHHHHh---CCCCeeEEEeCCCCeeeeecCchhHH
Confidence 0001123334556777788898 999999999998 6 7888888776 56789999999999974211111125
Q ss_pred HHHHHHHHHHhc
Q 002209 887 LWETDRWLQKYC 898 (953)
Q Consensus 887 ~~~i~~fl~~~l 898 (953)
.+.+.+||+++|
T Consensus 356 ~~~i~~fl~~~l 367 (367)
T 2hdw_A 356 FDRIAGFFDEHL 367 (367)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhC
Confidence 788999999875
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-18 Score=207.37 Aligned_cols=318 Identities=14% Similarity=0.095 Sum_probs=202.0
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCC
Q 002209 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (953)
Q Consensus 108 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~ 187 (953)
...+..++||+| +++|+..+ +..++.. .||++ ..+ +..++|+...
T Consensus 23 ~~~~~~~~~s~~--~~~~~~~~---------------------~~~~~~~------~l~~~--~~~---~~~~~l~~~~- 67 (662)
T 3azo_A 23 SGRPACVGAVGD--EVWWVAPR---------------------PAEAGRA------TLVRR--RAD---GAEESALPAP- 67 (662)
T ss_dssp CSCCEEEEEETT--EEEEEEEE---------------------TTTTTEE------EEEEE--CTT---SCEEESSCTT-
T ss_pred CCccceeEEcCC--eEEEEecC---------------------cccCCcE------EEEEE--CCC---CCcceeCCCC-
Confidence 346778889965 67777752 1122322 55654 222 4456665432
Q ss_pred CCccc---------ceEec--cCCCe-EEEEEeeccccCCCCcceEEEEECC--C-CceeecccCCCccccccccceEEe
Q 002209 188 GAKLN---------FVTWS--QDGKH-LAFSIRIDAEDSSSSKLRVWVADVD--T-GKARPLFQSPDIYLNAIFDNFVWV 252 (953)
Q Consensus 188 ~~~~~---------~~~wS--PDG~~-laf~~~~~~~~~~~~~~~l~~~d~~--~-g~~~~lt~~~~~~~~~~~~~~~ws 252 (953)
..+. .+.|| |||++ |+|+.. ...+||+++++ + ++.++|+..+.......+..++||
T Consensus 68 -~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~--------~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s 138 (662)
T 3azo_A 68 -WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF--------GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL 138 (662)
T ss_dssp -CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT--------TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE
T ss_pred -ccccccccccCCccceeeeecCCCeEEEEEEC--------CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC
Confidence 2333 56676 99999 999753 25689999998 6 888888874311001125689999
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C------Cce
Q 002209 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D------GTV 325 (953)
Q Consensus 253 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~------g~~ 325 (953)
|||+.|+++..+.... ... .+..+||++++ + |+.
T Consensus 139 pDg~~l~~~~~~~~~~--------------------------------~~~-------~~~~~i~~~~~~~~~~~~~~~~ 179 (662)
T 3azo_A 139 PERGEVWCMAEEFTGE--------------------------------GPS-------DVRRFLAAVPLDGSAAADRSAV 179 (662)
T ss_dssp TTTTEEEEEEEEECSS--------------------------------STT-------CEEEEEEEEETTSTTTTCGGGS
T ss_pred CCCCEEEEEEecccCC--------------------------------CCC-------CceeEEEEEECCCCccccCCce
Confidence 9999999883211000 000 03468999999 7 788
Q ss_pred eEeC-CC-CcccccccCCCCcEEEEEEecCCccccccCCCC-CcceEEEecc-Cc---eEEEeccCCCcccCCccccccc
Q 002209 326 KEIG-PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRF-PRQVGVWTTD-GI---FVRELCDLPLAEDIPIAFNSVR 398 (953)
Q Consensus 326 ~~l~-~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~-~~~i~~~d~~-g~---~~~~l~~~~~~~~~p~~~~~~~ 398 (953)
+.++ .. ..+..++|||||++|+|.+.+.+. ..+ ..+|++||++ ++ ..+.++... .
T Consensus 180 ~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~------~~~~~~~i~~~d~~~~g~~~~~~~l~~~~------------~ 241 (662)
T 3azo_A 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPR------MPWEGTELKTARVTEDGRFADTRTLLGGP------------E 241 (662)
T ss_dssp EESSCSCSSEECCCEECTTSSEEEEEEECTTC------CTTTCEEEEEEEECTTSCEEEEEEEEEET------------T
T ss_pred eEEEecCCCcccCceECCCCCEEEEEECCCCC------CCCCCcEEEEEEECCCCcccccEEeCCCC------------C
Confidence 8888 65 677889999999999999865421 111 2489999998 45 566665421 0
Q ss_pred cCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeeccccc---------CCeeeccCCce
Q 002209 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRY---------GGISWCDDSLA 469 (953)
Q Consensus 399 ~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~---------~~~~~SpDg~~ 469 (953)
..+..+.|||||+ ++|..+. ++...||++++ ++++.+.++...... ..++|+|||+.
T Consensus 242 ~~~~~~~~spdg~-l~~~~~~----------~~~~~l~~~~~---~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~ 307 (662)
T 3azo_A 242 EAIAQAEWAPDGS-LIVATDR----------TGWWNLHRVDP---ATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLI 307 (662)
T ss_dssp BCEEEEEECTTSC-EEEEECT----------TSSCEEEEECT---TTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCE
T ss_pred ceEcceEECCCCe-EEEEECC----------CCCeEEEEEEC---CCCceeecccccccccCccccccCceEeEeCCCEE
Confidence 2335789999999 7766321 22347999985 566667776554433 34566677775
Q ss_pred EEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEe-ccCCCEEEEEeeeccCCCcEEEEecCCCCCC
Q 002209 470 LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRR-TSTGTYVIAKIKKENDEGTYILLNGNGATPE 548 (953)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~ 548 (953)
++.. .. ...+||.++++++ +...++.. ...+ ..+ ++||+.+++.....+
T Consensus 308 ~~~~-~~--~~~~l~~~d~~~~--~~~~l~~~-~~~~--------~~~~s~~~~~~~~~~~~~~---------------- 357 (662)
T 3azo_A 308 AVVH-GK--GAAVLGILDPESG--ELVDAAGP-WTEW--------AATLTVSGTRAVGVAASPR---------------- 357 (662)
T ss_dssp EEEE-BS--SSCEEEEEETTTT--EEEECCSS-CCEE--------EEEEEEETTEEEEEEEETT----------------
T ss_pred EEEE-Ec--CccEEEEEECCCC--cEEEecCC-CCeE--------EEEEecCCCEEEEEEcCCC----------------
Confidence 5444 33 3458999998875 33444322 1111 223 788888887764321
Q ss_pred CCCCeEEEEECCCCceEEEeccC
Q 002209 549 GNIPFLDLFDINTGSKERIWESD 571 (953)
Q Consensus 549 ~~~~~L~~~d~~~~~~~~l~~~~ 571 (953)
....||++|+++++.++|+...
T Consensus 358 -~~~~i~~~d~~~g~~~~l~~~~ 379 (662)
T 3azo_A 358 -TAYEVVELDTVTGRARTIGARH 379 (662)
T ss_dssp -EEEEEEEEETTTCCEEEEESCC
T ss_pred -CCCEEEEEECCCCceEEeecCC
Confidence 2346999999999999887655
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-19 Score=190.43 Aligned_cols=202 Identities=17% Similarity=0.141 Sum_probs=142.2
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh--hhhHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAAV 747 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~~~ 747 (953)
.+.||++||... +...| ...+..|+++||.|++ .|.+|+|.+... .......+.|+.+++
T Consensus 51 ~~~VlllHG~~~-----------s~~~~----~~la~~La~~Gy~Via---~Dl~GhG~S~~~~~~~~~~~~~~d~~~~~ 112 (281)
T 4fbl_A 51 RIGVLVSHGFTG-----------SPQSM----RFLAEGFARAGYTVAT---PRLTGHGTTPAEMAASTASDWTADIVAAM 112 (281)
T ss_dssp SEEEEEECCTTC-----------CGGGG----HHHHHHHHHTTCEEEE---CCCTTSSSCHHHHHTCCHHHHHHHHHHHH
T ss_pred CceEEEECCCCC-----------CHHHH----HHHHHHHHHCCCEEEE---ECCCCCCCCCccccCCCHHHHHHHHHHHH
Confidence 456889999421 11111 2456788999999999 555788888543 223566789999999
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC-----------CcCc-------cc----
Q 002209 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-----------PFGF-------QN---- 805 (953)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~-----------~~~~-------~~---- 805 (953)
++|.+.. ++++|+||||||.+++.++.++|++++++|++++....... .... ..
T Consensus 113 ~~l~~~~----~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (281)
T 4fbl_A 113 RWLEERC----DVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVK 188 (281)
T ss_dssp HHHHHHC----SEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCC
T ss_pred HHHHhCC----CeEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHH
Confidence 9997653 58999999999999999999999999999999986542110 0000 00
Q ss_pred c---cchhhhhHHHHHhc--CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc
Q 002209 806 E---DRTLWEATSTYVEM--SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880 (953)
Q Consensus 806 ~---~~~~~~~~~~~~~~--sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 880 (953)
. ...+......+... .....+.++++|+|++||++|.+|| ++.+.++++.+.. .+++++++|++||.....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~v~--~~~~~~l~~~l~~--~~~~l~~~~~~gH~~~~e 264 (281)
T 4fbl_A 189 ELAYPVTPVPAIKHLITIGAVAEMLLPRVKCPALIIQSREDHVVP--PHNGELIYNGIGS--TEKELLWLENSYHVATLD 264 (281)
T ss_dssp CCCCSEEEGGGHHHHHHHHHHHHHHGGGCCSCEEEEEESSCSSSC--THHHHHHHHHCCC--SSEEEEEESSCCSCGGGS
T ss_pred HhhhccCchHHHHHHHHhhhhccccccccCCCEEEEEeCCCCCcC--HHHHHHHHHhCCC--CCcEEEEECCCCCcCccc
Confidence 0 00001111111100 0113457889999999999999999 9999999887753 467999999999987544
Q ss_pred ccHHHHHHHHHHHHHHh
Q 002209 881 ESIMHVLWETDRWLQKY 897 (953)
Q Consensus 881 ~~~~~~~~~i~~fl~~~ 897 (953)
.+.+.+.+.+.+||++|
T Consensus 265 ~~~e~v~~~i~~FL~~H 281 (281)
T 4fbl_A 265 NDKELILERSLAFIRKH 281 (281)
T ss_dssp TTHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 45788899999999876
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-19 Score=211.89 Aligned_cols=251 Identities=14% Similarity=0.149 Sum_probs=174.4
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHH-HHHHHcCcEE
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV-LLWLARGFAI 715 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la~~G~~V 715 (953)
+..+.+.++..||.+|.+++|+|++. +++|+||++||...... .....+...|... .... +.|+++||+|
T Consensus 35 ~~~~~v~i~~~DG~~L~~~l~~P~~~-----~~~PvIl~~hpyg~~~~---~~~~~~~~~~~~~-~~~~~~~la~~GyaV 105 (652)
T 2b9v_A 35 YIKREVMVPMRDGVKLYTVIVIPKNA-----RNAPILLTRTPYNAKGR---ANRVPNALTMREV-LPQGDDVFVEGGYIR 105 (652)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTC-----CSEEEEEEEESSCHHHH---TCSSTTCSSHHHH-SCGGGHHHHHTTCEE
T ss_pred cEEEEEEEECCCCcEEEEEEEecCCC-----CCccEEEEECCCCCCcc---ccccccccccccc-ccchHHHHHhCCCEE
Confidence 44578899999999999999999762 35899999996311100 0000000000000 0012 6789999999
Q ss_pred EEcCCCCCCCCCChhhhh-----hhH---HHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCCcccE
Q 002209 716 LGGPTTPIIGEGDEEAND-----RFV---EQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~-----~~~---~~~~~D~~~~~~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (953)
+.+|++|..+.+..+... .+. ..+++|+.++++||.++ +++| .||+++|+||||++++.++++.|+.|+|
T Consensus 106 v~~D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka 184 (652)
T 2b9v_A 106 VFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKV 184 (652)
T ss_dssp EEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEE
T ss_pred EEEecCcCCCCCCcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEE
Confidence 997777655544332211 122 26889999999999999 8877 5999999999999999999888899999
Q ss_pred EEEcccCCCCCC-CCc---Cccccc----------------------ch------------------------hhhh---
Q 002209 787 GIARSGAYNRTL-TPF---GFQNED----------------------RT------------------------LWEA--- 813 (953)
Q Consensus 787 ~v~~~~~~d~~~-~~~---~~~~~~----------------------~~------------------------~~~~--- 813 (953)
+|+.++++|+.. ..+ +..... .. .|.+
T Consensus 185 ~v~~~~~~d~~~~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (652)
T 2b9v_A 185 AAPESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHA 264 (652)
T ss_dssp EEEEEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHH
T ss_pred EEecccccccccccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHh
Confidence 999999988532 110 000000 00 0110
Q ss_pred ----HHHHHhcCcccccCC--CCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCC--CcEEEEEeCCCCccCCC------
Q 002209 814 ----TSTYVEMSPFMSANK--LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG--ALCRLVILPFESHGYAA------ 879 (953)
Q Consensus 814 ----~~~~~~~sp~~~~~~--i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~H~~~~------ 879 (953)
.+.|...||+.++++ |++|+|++||..|.+ + ..++.++|++|+..+ +++++++.|+ +|+...
T Consensus 265 ~p~~d~yw~~~Sp~~~~~~~~I~~PvLiv~G~~D~~-~--~~~~~~~~~aL~~~g~~~~~~lvigp~-~H~~~~~~~~~~ 340 (652)
T 2b9v_A 265 HPAYDAFWQGQALDKILAQRKPTVPMLWEQGLWDQE-D--MWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTL 340 (652)
T ss_dssp CCSSSHHHHTTCHHHHHHHHCCCSCEEEEEETTCSS-C--SSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEE
T ss_pred CCCCChHHhcCChhhhhhcCCCCCCEEEEeecCCcc-c--cccHHHHHHHHHhcCCCCCCEEEECCC-CCCCcccccccC
Confidence 122455788888999 999999999999997 6 678999999999998 8899999997 797411
Q ss_pred ------cc-cHHHHHHHHHHHHHHhccCC
Q 002209 880 ------RE-SIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 880 ------~~-~~~~~~~~i~~fl~~~l~~~ 901 (953)
.+ ......+.+++||++||+..
T Consensus 341 ~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 369 (652)
T 2b9v_A 341 GPLEFEGDTAHQYRRDVFRPFFDEYLKPG 369 (652)
T ss_dssp TTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred CccccccccchhhhhhHHHHHHHHHhCCC
Confidence 01 12334678899999999864
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-19 Score=194.27 Aligned_cols=234 Identities=17% Similarity=0.130 Sum_probs=164.4
Q ss_pred CCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCc
Q 002209 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGF 713 (953)
Q Consensus 635 ~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~ 713 (953)
..+..+.+++.+.+|..+.+++|.|.+ ++.|+||++|||.+..+ ....+ ......|+ +.||
T Consensus 56 ~~~~~~~~~i~~~~G~~i~~~~~~P~~------~~~p~vv~~HGgG~~~g--------~~~~~----~~~~~~la~~~g~ 117 (317)
T 3qh4_A 56 AGVAVADDVVTGEAGRPVPVRIYRAAP------TPAPVVVYCHAGGFALG--------NLDTD----HRQCLELARRARC 117 (317)
T ss_dssp HCCEEEEEEEECTTSCEEEEEEEECSC------SSEEEEEEECCSTTTSC--------CTTTT----HHHHHHHHHHHTS
T ss_pred CcceEEEEEecCCCCCeEEEEEEecCC------CCCcEEEEECCCcCccC--------ChHHH----HHHHHHHHHHcCC
Confidence 346678899999999999999999974 24899999999754322 11111 23455666 4699
Q ss_pred EEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCCC----cccE
Q 002209 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCC 786 (953)
Q Consensus 714 ~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~a 786 (953)
+|+.+|++...++ .+...++|+.++++|+.++ ..+|++||+|+|+|+||++|+.++.+.++ .+++
T Consensus 118 ~vv~~dyr~~p~~--------~~p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~ 189 (317)
T 3qh4_A 118 AVVSVDYRLAPEH--------PYPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIF 189 (317)
T ss_dssp EEEEECCCCTTTS--------CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCE
T ss_pred EEEEecCCCCCCC--------CCchHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeE
Confidence 9999888643322 2356678999999999875 45788999999999999999999987554 4999
Q ss_pred EEEcccCCCCCCCCcCcccccchhhh--h----HHHHHh-------cCcccccCCCC--CcEEEEEeCCCCCCCCchHHH
Q 002209 787 GIARSGAYNRTLTPFGFQNEDRTLWE--A----TSTYVE-------MSPFMSANKLK--KPILLVHGEEDNNSGTLTMQS 851 (953)
Q Consensus 787 ~v~~~~~~d~~~~~~~~~~~~~~~~~--~----~~~~~~-------~sp~~~~~~i~--~P~Li~~G~~D~~v~~~~~~~ 851 (953)
+++++|+.+...............+. . ...|.. .+|.. ...+. .|+||+||+.|..+ .++
T Consensus 190 ~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~l~~lpP~li~~G~~D~~~----~~~ 264 (317)
T 3qh4_A 190 QLLHQPVLDDRPTASRSEFRATPAFDGEAASLMWRHYLAGQTPSPESVPGR-RGQLAGLPATLITCGEIDPFR----DEV 264 (317)
T ss_dssp EEEESCCCCSSCCHHHHHTTTCSSSCHHHHHHHHHHHHTTCCCCTTTCGGG-CSCCTTCCCEEEEEEEESTTH----HHH
T ss_pred EEEECceecCCCCcCHHHhcCCCCcCHHHHHHHHHHhcCCCCCCcccCCCc-ccccCCCCceeEEecCcCCCc----hhH
Confidence 99999998764111000000000000 0 011111 12221 12222 49999999999874 578
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCC----CcccHHHHHHHHHHHHHHhcc
Q 002209 852 DRFFNALKGHGALCRLVILPFESHGYA----ARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~----~~~~~~~~~~~i~~fl~~~l~ 899 (953)
.++.++|++.++++++++||+++|++. ..+....+.+.+.+||.+++.
T Consensus 265 ~~~a~~l~~~g~~~~l~~~~g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 316 (317)
T 3qh4_A 265 LDYAQRLLGAGVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAFY 316 (317)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEETTHHHHCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEEeCCCccchhhhcCCchHHHHHHHHHHHHHHHHhC
Confidence 899999999999999999999999863 234567888999999999874
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-17 Score=195.97 Aligned_cols=348 Identities=12% Similarity=0.105 Sum_probs=224.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccc--------cccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceee
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELA--------RPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~ 181 (953)
.+..+.++|||++|+....+....+++.. ........+.+.+++.........+.|.+|+.. + .....
T Consensus 182 ~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~--~--~~~~~ 257 (577)
T 2ymu_A 182 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--G--QLLQT 257 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT--S--CEEEE
T ss_pred ceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC--C--CEEEE
Confidence 34567899999999987765332222221 122234556777776554444445678999863 2 23333
Q ss_pred eecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 182 l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
+.. ....+....|+|||+.|+.... ...|.+++.++...+.+..+... +..++|+|||+.|+..
T Consensus 258 ~~~--~~~~v~~v~~~~d~~~l~~~~~---------d~~i~~w~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~t~ 321 (577)
T 2ymu_A 258 LTG--HSSSVNGVAFRPDGQTIASASD---------DKTVKLWNRNGQLLQTLTGHSSS-----VWGVAFSPDGQTIASA 321 (577)
T ss_dssp ECC--CSSCEEEEEECTTSSEEEEEET---------TSCEEEEETTSCEEEEECCCSSC-----EEEEEECTTSSEEEEE
T ss_pred Eec--CCCCEEEEEEcCCCCEEEEEeC---------CCEEEEEeCCCcEEEEEecCCCC-----eEEEEECCCCCEEEEE
Confidence 433 2246888999999999988552 45677888766555555433322 6788999999998866
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-Cccccccc
Q 002209 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDP 339 (953)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~ 339 (953)
. ..+.|.++++ +.....+... ..+..++|
T Consensus 322 ~-------------------------------------------------~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~ 352 (577)
T 2ymu_A 322 S-------------------------------------------------DDKTVKLWNRNGQHLQTLTGHSSSVWGVAF 352 (577)
T ss_dssp E-------------------------------------------------TTSCEEEEETTSCEEEEECCCSSCEEEEEE
T ss_pred e-------------------------------------------------CCCeEEEEeCCCCeeEEEeCCCCCEEEEEE
Confidence 1 1134556677 4555666555 67788999
Q ss_pred CCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002209 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (953)
Q Consensus 340 SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~ 419 (953)
+|||++|+....+ +.+.+|+.++.....+..+. ..+..++|+|||+.++..
T Consensus 353 s~~g~~l~~~~~d-------------g~v~~~~~~~~~~~~~~~~~-------------~~v~~~~~s~dg~~l~~~--- 403 (577)
T 2ymu_A 353 SPDGQTIASASDD-------------KTVKLWNRNGQLLQTLTGHS-------------SSVRGVAFSPDGQTIASA--- 403 (577)
T ss_dssp CTTSSEEEEEETT-------------SEEEEEETTCCEEEEEECCS-------------SCEEEEEECTTSSCEEEE---
T ss_pred CCCCCEEEEEeCC-------------CEEEEEcCCCCEEEEecCCC-------------CCeEEEEECCCCCEEEEE---
Confidence 9999999988743 37999998877666655432 234679999999988765
Q ss_pred ccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEee
Q 002209 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (953)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 499 (953)
+....|.+|+. ++.....+..+...+..++|+||++.|+....++ .+.+++..+ +.....
T Consensus 404 ----------~~d~~v~~~~~---~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~----~v~~w~~~~---~~~~~~ 463 (577)
T 2ymu_A 404 ----------SDDKTVKLWNR---NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK----TVKLWNRNG---QLLQTL 463 (577)
T ss_dssp ----------ETTSEEEEECT---TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTS---CEEEEE
T ss_pred ----------eCCCEEEEEeC---CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCC----EEEEEECCC---CEEEEE
Confidence 44567889985 5544555666677778899999999998876543 355556544 222222
Q ss_pred cCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeee
Q 002209 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (953)
Q Consensus 500 ~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~ 579 (953)
......+.. +.|||||++|+....+ ..|++||..+...+.+...... +
T Consensus 464 ~~~~~~v~~------~~~spd~~~las~~~d---------------------~~i~iw~~~~~~~~~~~~h~~~-----v 511 (577)
T 2ymu_A 464 TGHSSSVRG------VAFSPDGQTIASASDD---------------------KTVKLWNRNGQLLQTLTGHSSS-----V 511 (577)
T ss_dssp ECCSSCEEE------EEECTTSCEEEEEETT---------------------SEEEEEETTSCEEEEEECCSSC-----E
T ss_pred cCCCCCEEE------EEEcCCCCEEEEEeCC---------------------CEEEEEcCCCCEEEEEeCCCCC-----E
Confidence 223333333 7899999999877632 2488999765444444433322 2
Q ss_pred EeeccCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002209 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (953)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 618 (953)
.. .+|+|||+.|+..... ..+++++..+
T Consensus 512 ~~-------l~~s~dg~~l~s~~~d----g~v~lwd~~~ 539 (577)
T 2ymu_A 512 RG-------VAFSPDGQTIASASDD----KTVKLWNRNG 539 (577)
T ss_dssp EE-------EEECTTSSCEEEEETT----SEEEEECTTS
T ss_pred EE-------EEEcCCCCEEEEEECc----CEEEEEeCCC
Confidence 22 4689999977643322 4588888543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.3e-18 Score=204.50 Aligned_cols=332 Identities=11% Similarity=0.058 Sum_probs=203.1
Q ss_pred hHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCcee
Q 002209 101 EIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (953)
Q Consensus 101 ~~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~ 180 (953)
++..++.....+.| +|||++++|.... .+... ..||+.+.. + +..+
T Consensus 66 ~~~~~~~~~~~~~p--~~dG~~~~~~~~~----------------------~~~~~------~~l~~~~~~--~--~~~~ 111 (710)
T 2xdw_A 66 RMTELYDYPKYSCH--FKKGKRYFYFYNT----------------------GLQNQ------RVLYVQDSL--E--GEAR 111 (710)
T ss_dssp HHHHHHCSCEECCC--EEETTEEEEEEEC----------------------SSCSS------CEEEEESST--T--SCCE
T ss_pred HHHHhhccccCCCC--EEECCEEEEEEEc----------------------CCceE------EEEEEEcCC--C--CCcE
Confidence 45666666556666 4999999999875 11112 256776542 2 3333
Q ss_pred eee---cCCCCC--cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCC
Q 002209 181 EIQ---GFPDGA--KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS 255 (953)
Q Consensus 181 ~l~---~~~~~~--~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg 255 (953)
.|. .+..+. .+..++|||||++|||..+.. ++....||++|+++|+..+++..... +..++|||||
T Consensus 112 ~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~----G~~~~~i~v~d~~tg~~~~~~~~~~~-----~~~~~wspDg 182 (710)
T 2xdw_A 112 VFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSAS----GSDWVTIKFMKVDGAKELPDVLERVK-----FSCMAWTHDG 182 (710)
T ss_dssp EEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEET----TCSCEEEEEEETTTTEEEEEEEEEEC-----SCCEEECTTS
T ss_pred EEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCC----CCceEEEEEEECCCCCCCcccccCcc-----cceEEEEeCC
Confidence 332 122222 467899999999999988643 44456999999999998775432221 4579999999
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce--eEeCCC-
Q 002209 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV--KEIGPP- 331 (953)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~--~~l~~~- 331 (953)
+.|+|+......... .+. .... ....+||++++ ++.. +.+...
T Consensus 183 ~~l~~~~~~~~~~~~------~~~--------------------~~~~-------~~~~~v~~~~l~t~~~~~~~v~~~~ 229 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKS------DGT--------------------ETST-------NLHQKLYYHVLGTDQSEDILCAEFP 229 (710)
T ss_dssp SEEEEEECCCCSSCC------SSS--------------------CCCC-------CCCCEEEEEETTSCGGGCEEEECCT
T ss_pred CEEEEEEECCccccc------ccc--------------------cccc-------CCCCEEEEEECCCCcccceEEeccC
Confidence 999998543221100 000 0000 02357999999 6642 333222
Q ss_pred ---CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC------c--eEEEeccCCCcccCCccccccccC
Q 002209 332 ---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG------I--FVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 332 ---~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g------~--~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
....++.|||||++|++.+.+.. ....+|+++|+++ + ..+.|+.... .
T Consensus 230 ~~~~~~~~~~~SpDg~~l~~~~~~~~--------~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~-------------~ 288 (710)
T 2xdw_A 230 DEPKWMGGAELSDDGRYVLLSIREGC--------DPVNRLWYCDLQQESNGITGILKWVKLIDNFE-------------G 288 (710)
T ss_dssp TCTTCEEEEEECTTSCEEEEEEECSS--------SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS-------------S
T ss_pred CCCeEEEEEEEcCCCCEEEEEEEccC--------CCccEEEEEECcccccccCCccceEEeeCCCC-------------c
Confidence 33568899999999999985431 1134899999985 4 4555554321 1
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC---ceEEeeccc--ccCCeeeccCCceEEEEEe
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG---PEILHKLDL--RYGGISWCDDSLALVYESW 475 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~---~~~l~~~~~--~~~~~~~SpDg~~l~~~~~ 475 (953)
....|+|||+.++|..+.. .....|+++++ +++. .+.+..+.. .+..+.|++++ .|++...
T Consensus 289 -~~~~~s~dg~~l~~~s~~~---------~~~~~l~~~d~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~ 354 (710)
T 2xdw_A 289 -EYDYVTNEGTVFTFKTNRH---------SPNYRLINIDF---TDPEESKWKVLVPEHEKDVLEWVACVRSN-FLVLCYL 354 (710)
T ss_dssp -CEEEEEEETTEEEEEECTT---------CTTCEEEEEET---TSCCGGGCEEEECCCSSCEEEEEEEETTT-EEEEEEE
T ss_pred -EEEEEeccCCEEEEEECCC---------CCCCEEEEEeC---CCCCcccceeccCCCCCCeEEEEEEEcCC-EEEEEEE
Confidence 1235999999988874321 23558999996 4443 255654432 45678898555 4555544
Q ss_pred cccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEE
Q 002209 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLD 555 (953)
Q Consensus 476 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 555 (953)
.+ ...+||++++.++. ....+.. +...+.+ ++++|||+.++|...+. . ....||
T Consensus 355 ~~-g~~~l~~~~~~~g~-~~~~l~~-~~~~v~~------~~~s~d~~~l~~~~ss~--------------~---~P~~i~ 408 (710)
T 2xdw_A 355 HD-VKNTLQLHDLATGA-LLKIFPL-EVGSVVG------YSGQKKDTEIFYQFTSF--------------L---SPGIIY 408 (710)
T ss_dssp ET-TEEEEEEEETTTCC-EEEEECC-CSSEEEE------EECCTTCSEEEEEEECS--------------S---CCCEEE
T ss_pred EC-CEEEEEEEECCCCC-EEEecCC-CCceEEE------EecCCCCCEEEEEEeCC--------------C---CCCEEE
Confidence 44 33589999985541 2233322 2222222 67889999888886432 1 234599
Q ss_pred EEECCCCc--eEEEec
Q 002209 556 LFDINTGS--KERIWE 569 (953)
Q Consensus 556 ~~d~~~~~--~~~l~~ 569 (953)
+||+.+++ .+.+..
T Consensus 409 ~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 409 HCDLTKEELEPRVFRE 424 (710)
T ss_dssp EEETTSSSCCCEEEEE
T ss_pred EEECCCCccceEEeee
Confidence 99999988 555544
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-18 Score=188.02 Aligned_cols=234 Identities=18% Similarity=0.151 Sum_probs=162.5
Q ss_pred CCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCc
Q 002209 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGF 713 (953)
Q Consensus 635 ~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~ 713 (953)
..+.++.+++...+| .+.+++|.|.+ .++.|+||++|||.+..+ +...+ ......|++ .||
T Consensus 61 ~~~~~~~~~i~~~~~-~i~~~iy~P~~-----~~~~p~vv~~HGGg~~~g--------~~~~~----~~~~~~La~~~g~ 122 (323)
T 3ain_A 61 EVGKIEDITIPGSET-NIKARVYYPKT-----QGPYGVLVYYHGGGFVLG--------DIESY----DPLCRAITNSCQC 122 (323)
T ss_dssp CCSEEEEEEEECSSS-EEEEEEEECSS-----CSCCCEEEEECCSTTTSC--------CTTTT----HHHHHHHHHHHTS
T ss_pred CccEEEEEEecCCCC-eEEEEEEecCC-----CCCCcEEEEECCCccccC--------ChHHH----HHHHHHHHHhcCC
Confidence 345678899988777 89999999975 234899999999753321 11122 234556775 499
Q ss_pred EEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCC-C-CCCcEEEEEeChHHHHHHHHHHhCCCcc---cEEE
Q 002209 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGV-A-HPSKIAVGGHSYGAFMTANLLAHAPHLF---CCGI 788 (953)
Q Consensus 714 ~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~-~-d~~~i~l~G~S~GG~~a~~~a~~~p~~~---~a~v 788 (953)
.|+.+|++ |.|.+. +...++|+.++++|+.+... . |+++|+|+|+|+||.+|+.++.+.|++. +++|
T Consensus 123 ~Vv~~Dyr---g~~~~~-----~p~~~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~v 194 (323)
T 3ain_A 123 VTISVDYR---LAPENK-----FPAAVVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQV 194 (323)
T ss_dssp EEEEECCC---CTTTSC-----TTHHHHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEE
T ss_pred EEEEecCC---CCCCCC-----CcchHHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEE
Confidence 99997664 554432 24567899999999987631 1 7889999999999999999999887766 8999
Q ss_pred EcccCCCCCCCCcCcccc-cchhhh--h----HHHH---------HhcCcccc-cCCCCCcEEEEEeCCCCCCCCchHHH
Q 002209 789 ARSGAYNRTLTPFGFQNE-DRTLWE--A----TSTY---------VEMSPFMS-ANKLKKPILLVHGEEDNNSGTLTMQS 851 (953)
Q Consensus 789 ~~~~~~d~~~~~~~~~~~-~~~~~~--~----~~~~---------~~~sp~~~-~~~i~~P~Li~~G~~D~~v~~~~~~~ 851 (953)
+++|+.+.......+... ....+. . ...| ...+|+.. +..+ .|+||++|+.|.. ..++
T Consensus 195 l~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~l-~P~lii~G~~D~l----~~~~ 269 (323)
T 3ain_A 195 LIYPAVSFDLITKSLYDNGEGFFLTREHIDWFGQQYLRSFADLLDFRFSPILADLNDL-PPALIITAEHDPL----RDQG 269 (323)
T ss_dssp EESCCCSCCSCCHHHHHHSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGSCCTTC-CCEEEEEETTCTT----HHHH
T ss_pred EEeccccCCCCCccHHHhccCCCCCHHHHHHHHHHhCCCCcccCCcccCcccCcccCC-CHHHEEECCCCcc----HHHH
Confidence 999987643221100000 000000 0 0001 01234332 2222 4999999999986 4578
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHhcc
Q 002209 852 DRFFNALKGHGALCRLVILPFESHGYAA----RESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~fl~~~l~ 899 (953)
..++++++..+++++++++++++|.+.. .+....+.+.+.+||.+++.
T Consensus 270 ~~~a~~l~~ag~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 321 (323)
T 3ain_A 270 EAYANKLLQSGVQVTSVGFNNVIHGFVSFFPFIEQGRDAIGLIGYVLRKVFY 321 (323)
T ss_dssp HHHHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEECCCccccccccCcCHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999753 23457888999999999874
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.8e-19 Score=190.54 Aligned_cols=233 Identities=16% Similarity=0.182 Sum_probs=162.1
Q ss_pred CCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHc-CcE
Q 002209 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-GFA 714 (953)
Q Consensus 636 ~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G~~ 714 (953)
....+.+++.+.+| .+.+++|.|++. .++.|+||++|||.+..+ ....+ ......|+++ ||.
T Consensus 45 ~~~~~~~~i~~~~g-~l~~~~~~P~~~----~~~~p~vv~~HGGg~~~g--------~~~~~----~~~~~~la~~~g~~ 107 (310)
T 2hm7_A 45 VAEVREFDMDLPGR-TLKVRMYRPEGV----EPPYPALVYYHGGSWVVG--------DLETH----DPVCRVLAKDGRAV 107 (310)
T ss_dssp CSEEEEEEEEETTE-EEEEEEEECTTC----CSSEEEEEEECCSTTTSC--------CTTTT----HHHHHHHHHHHTSE
T ss_pred cceEEEEEeccCCC-eEEEEEEecCCC----CCCCCEEEEECCCccccC--------ChhHh----HHHHHHHHHhcCCE
Confidence 45678899998887 999999999753 234899999999753322 11112 2345667775 999
Q ss_pred EEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCC----cccEE
Q 002209 715 ILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCG 787 (953)
Q Consensus 715 V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~a~ 787 (953)
|+.+|++ |.|... +...+.|+.++++|+.++. .+|+++++|+||||||.+++.++.++|+ .++++
T Consensus 108 v~~~d~r---g~~~~~-----~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~ 179 (310)
T 2hm7_A 108 VFSVDYR---LAPEHK-----FPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQ 179 (310)
T ss_dssp EEEECCC---CTTTSC-----TTHHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCE
T ss_pred EEEeCCC---CCCCCC-----CCccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEE
Confidence 9997775 444321 2456789999999998864 3678899999999999999999998765 69999
Q ss_pred EEcccCCCCC--CCCcCcccc-cchhhh--h----HHHH---------HhcCcccc--cCCCCCcEEEEEeCCCCCCCCc
Q 002209 788 IARSGAYNRT--LTPFGFQNE-DRTLWE--A----TSTY---------VEMSPFMS--ANKLKKPILLVHGEEDNNSGTL 847 (953)
Q Consensus 788 v~~~~~~d~~--~~~~~~~~~-~~~~~~--~----~~~~---------~~~sp~~~--~~~i~~P~Li~~G~~D~~v~~~ 847 (953)
|+++|..+.. .....+... ....+. . ...| ...+|+.. +..+ .|+||+||++|..
T Consensus 180 vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~-~P~lii~G~~D~~---- 254 (310)
T 2hm7_A 180 LLIYPSTGYDPAHPPASIEENAEGYLLTGGMMLWFRDQYLNSLEELTHPWFSPVLYPDLSGL-PPAYIATAQYDPL---- 254 (310)
T ss_dssp EEESCCCCCCTTSCCHHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTC-CCEEEEEEEECTT----
T ss_pred EEEcCCcCCCcccCCcchhhcCCCCCCCHHHHHHHHHHhCCCCCccCCccCCCCcCccccCC-CCEEEEEecCCCc----
Confidence 9999987754 111000000 000000 0 0001 01233321 2223 3999999999986
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHhc
Q 002209 848 TMQSDRFFNALKGHGALCRLVILPFESHGYAA----RESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 848 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~fl~~~l 898 (953)
..++..++++++..+.+++++++++++|.+.. .+....+.+.+.+||.+++
T Consensus 255 ~~~~~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 309 (310)
T 2hm7_A 255 RDVGKLYAEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 309 (310)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCEEEEEeCCCccchhhhcccChHHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999998742 2345678899999999886
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-20 Score=195.49 Aligned_cols=237 Identities=13% Similarity=0.111 Sum_probs=151.5
Q ss_pred eEEEEEE-cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 639 KELIKYQ-RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 639 ~~~~~~~-~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
.+.+++. ...|.++.+.+|+|++++ .+++|+||++||+..... .+... ......+++.||+|+.
T Consensus 22 ~~~~~~~s~~~~~~~~~~v~~P~~~~---~~~~p~vv~lHG~~~~~~-----------~~~~~-~~~~~~~~~~g~~vv~ 86 (283)
T 4b6g_A 22 QQVWAHHAQTLQCEMKFAVYLPNNPE---NRPLGVIYWLSGLTCTEQ-----------NFITK-SGFQRYAAEHQVIVVA 86 (283)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCTT---CCCEEEEEEECCTTCCSH-----------HHHHH-SCTHHHHHHHTCEEEE
T ss_pred EEEEEEechhhCCceEEEEEeCCCCC---CCCCCEEEEEcCCCCCcc-----------chhhc-ccHHHHHhhCCeEEEE
Confidence 3444444 346889999999999865 235999999999742211 11000 0123456778999999
Q ss_pred cCCC--CCC---------CCCChhhh----------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002209 718 GPTT--PII---------GEGDEEAN----------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (953)
Q Consensus 718 ~~~~--~~~---------G~G~~~~~----------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (953)
++.. +.. |.|.++.. ..+......++... +.+... +.++++|+||||||++|+.+
T Consensus 87 ~d~~~rg~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~-~~~~~~l~G~S~GG~~a~~~ 162 (283)
T 4b6g_A 87 PDTSPRGEQVPNDDAYDLGQSAGFYLNATEQPWAANYQMYDYILNELPRL---IEKHFP-TNGKRSIMGHSMGGHGALVL 162 (283)
T ss_dssp ECSSCCSTTSCCCSSTTSBTTBCTTSBCCSTTGGGTCBHHHHHHTHHHHH---HHHHSC-EEEEEEEEEETHHHHHHHHH
T ss_pred eccccccccccccccccccCCCcccccCccCcccchhhHHHHHHHHHHHH---HHHhCC-CCCCeEEEEEChhHHHHHHH
Confidence 7742 111 22222110 01123333444444 333322 45799999999999999999
Q ss_pred HHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCC--CCcEEEEEeCCCCCCCCchHH-HHH
Q 002209 777 LAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL--KKPILLVHGEEDNNSGTLTMQ-SDR 853 (953)
Q Consensus 777 a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i--~~P~Li~~G~~D~~v~~~~~~-~~~ 853 (953)
+.++|++|+++++++|+++....++...............+...+|...+.++ ..|+|++||+.|.+++ ... +++
T Consensus 163 a~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~ 240 (283)
T 4b6g_A 163 ALRNQERYQSVSAFSPILSPSLVPWGEKAFTAYLGKDREKWQQYDANSLIQQGYKVQGMRIDQGLEDEFLP--TQLRTED 240 (283)
T ss_dssp HHHHGGGCSCEEEESCCCCGGGSHHHHHHHHHHHCSCGGGGGGGCHHHHHHHTCCCSCCEEEEETTCTTHH--HHTCHHH
T ss_pred HHhCCccceeEEEECCccccccCcchhhhHHhhcCCchHHHHhcCHHHHHHhcccCCCEEEEecCCCccCc--chhhHHH
Confidence 99999999999999998764322211000000000111122334554444444 3599999999999876 522 899
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
++++|++.+++++++++||++|.+. ........+++|+.++|+
T Consensus 241 ~~~~l~~~g~~~~~~~~~g~~H~~~---~~~~~l~~~l~~~~~~l~ 283 (283)
T 4b6g_A 241 FIETCRAANQPVDVRFHKGYDHSYY---FIASFIGEHIAYHAAFLK 283 (283)
T ss_dssp HHHHHHHHTCCCEEEEETTCCSSHH---HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCceEEEeCCCCcCHh---HHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999863 244567788899988763
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-18 Score=180.01 Aligned_cols=226 Identities=11% Similarity=0.092 Sum_probs=153.8
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
.....++.+.||..+.+++|.|.+ .++.|+||++||+.+..+ . ...+.......+++. |.|+.
T Consensus 2 ~~~~~~~~~~dg~~l~~~~~~p~~-----~~~~~~vv~~HG~~~~~~--------~---~~~~~~~~~~~l~~~-~~v~~ 64 (275)
T 3h04_A 2 TEIKYKVITKDAFALPYTIIKAKN-----QPTKGVIVYIHGGGLMFG--------K---ANDLSPQYIDILTEH-YDLIQ 64 (275)
T ss_dssp -CEEEEEECTTSCEEEEEEECCSS-----SSCSEEEEEECCSTTTSC--------C---TTCSCHHHHHHHTTT-EEEEE
T ss_pred cceEEEEecCCcEEEEEEEEccCC-----CCCCCEEEEEECCcccCC--------c---hhhhHHHHHHHHHhC-ceEEe
Confidence 345677888999999999999874 235899999999753221 1 111122344455555 99999
Q ss_pred cCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC
Q 002209 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~ 797 (953)
+|++ |.|.+ .....+.|+.++++++.+. ++.++++|+||||||.+++.++.+ ++++++|+++|+.+..
T Consensus 65 ~d~~---~~~~~-----~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~~~~~~ 132 (275)
T 3h04_A 65 LSYR---LLPEV-----SLDCIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYGYSRIN 132 (275)
T ss_dssp ECCC---CTTTS-----CHHHHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESCCSCSC
T ss_pred eccc---cCCcc-----ccchhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEecccccccc
Confidence 6664 44433 2356788999999999887 456899999999999999999999 6899999999987642
Q ss_pred CCCcCcc---------------------c---ccchhhhhHHH-------------HHh-------cC-cccccCCCCCc
Q 002209 798 LTPFGFQ---------------------N---EDRTLWEATST-------------YVE-------MS-PFMSANKLKKP 832 (953)
Q Consensus 798 ~~~~~~~---------------------~---~~~~~~~~~~~-------------~~~-------~s-p~~~~~~i~~P 832 (953)
....... . ........... +.. .. ....+.+++ |
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P 211 (275)
T 3h04_A 133 TEPFKTTNSYYAKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLP-P 211 (275)
T ss_dssp SHHHHSCCHHHHHHHTTSCHHHHHTTSCSSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTTCC-C
T ss_pred ccccccccchhhcccccchHHHHhcccCCCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhccCC-C
Confidence 1100000 0 00000000000 000 00 011125667 9
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH--HHHHHHHHHHHHHhcc
Q 002209 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI--MHVLWETDRWLQKYCV 899 (953)
Q Consensus 833 ~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~--~~~~~~i~~fl~~~l~ 899 (953)
+|++||++|..|| +.++.++++.+. ..+++++++++|.+...... ..+.+.+.+||++++.
T Consensus 212 ~lii~G~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 274 (275)
T 3h04_A 212 VFIAHCNGDYDVP--VEESEHIMNHVP----HSTFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAITM 274 (275)
T ss_dssp EEEEEETTCSSSC--THHHHHHHTTCS----SEEEEEECSSCSCTTSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEecCCCCCCC--hHHHHHHHHhcC----CceEEEeCCCCCCcccCCchhHHHHHHHHHHHHHHHhc
Confidence 9999999999998 898888876553 35799999999998654443 6888999999999873
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-19 Score=194.37 Aligned_cols=277 Identities=12% Similarity=0.044 Sum_probs=165.7
Q ss_pred CEEEEEEecCCCCceEEEEECCCCCeeEEecCC-CC-CCC---cCCCceEEEEEEcCCCcEEEEEEEcCCCC-CCCCCCC
Q 002209 596 LKILTSKESKTENTQYYIQSWPDKKSCQITDFP-HP-YPQ---LASLQKELIKYQRKDGVQLSATLYLPPGY-DPSKDGP 669 (953)
Q Consensus 596 ~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~-~~-~~~---~~~~~~~~~~~~~~dg~~~~~~l~~P~~~-~~~~~~~ 669 (953)
..+.+...+...+...+.+. .+|+..++.... .+ .+. ...+..+.+.+.. +..+.+.+|+|++. .+ .++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~-~~g~~~r~~~~~~~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~~P~~~~~~--~~~ 82 (338)
T 2o7r_A 8 TTGSSDPNTNLLKYLPIVLN-PDRTITRPIQIPSTAASPDPTSSSPVLTKDLALNP--LHNTFVRLFLPRHALYN--SAK 82 (338)
T ss_dssp ----------CTTTCSCEEC-TTSCEECCSCCCBCCCCCCTTSSCSEEEEEEEEET--TTTEEEEEEEEGGGGGS--SCC
T ss_pred CceeeccCcccccccceEEC-CCCeEEecCCCCCCCCCCCcccCCCEEEEEEEecC--CCCeEEEEEeCCCCCcC--CCC
Confidence 44555544433443334444 355554432111 11 111 2345667788875 45578889999753 11 235
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~ 748 (953)
.|+||++|||.+..+.. .. .........|+ ++||+|+.+|+++ .+.. .....++|+.++++
T Consensus 83 ~p~vv~~HGgg~~~~~~--------~~--~~~~~~~~~la~~~g~~vv~~d~rg---~~~~-----~~~~~~~d~~~~~~ 144 (338)
T 2o7r_A 83 LPLVVYFHGGGFILFSA--------AS--TIFHDFCCEMAVHAGVVIASVDYRL---APEH-----RLPAAYDDAMEALQ 144 (338)
T ss_dssp EEEEEEECCSTTTSCCT--------TB--HHHHHHHHHHHHHHTCEEEEEECCC---TTTT-----CTTHHHHHHHHHHH
T ss_pred ceEEEEEcCCcCcCCCC--------Cc--hhHHHHHHHHHHHCCcEEEEecCCC---CCCC-----CCchHHHHHHHHHH
Confidence 89999999975432211 10 00123455677 7899999977754 3322 12456789999999
Q ss_pred HHHHcC------CCCCCcEEEEEeChHHHHHHHHHHhCCC--------cccEEEEcccCCCCCCCCcC--------c-c-
Q 002209 749 EVVRRG------VAHPSKIAVGGHSYGAFMTANLLAHAPH--------LFCCGIARSGAYNRTLTPFG--------F-Q- 804 (953)
Q Consensus 749 ~l~~~~------~~d~~~i~l~G~S~GG~~a~~~a~~~p~--------~~~a~v~~~~~~d~~~~~~~--------~-~- 804 (953)
|+.++. .+|.++++|+|||+||.+++.++.++|+ +++++|+++|+++....... + .
T Consensus 145 ~l~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~ 224 (338)
T 2o7r_A 145 WIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEPGFGGSKRTGSELRLANDSRLPT 224 (338)
T ss_dssp HHHTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEEEEESCCCCCSSCCHHHHHTTTCSSSCH
T ss_pred HHHhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEEEEECCccCCCcCChhhhccCCCcccCH
Confidence 998762 2677899999999999999999999887 89999999998763321000 0 0
Q ss_pred cccchhhhhH------HHHHhcCccc---------ccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEE
Q 002209 805 NEDRTLWEAT------STYVEMSPFM---------SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869 (953)
Q Consensus 805 ~~~~~~~~~~------~~~~~~sp~~---------~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~ 869 (953)
......|... ......+|+. .+.++.+|+||+||++|..++ .+.++++++++.+.++++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~Lvi~G~~D~~~~----~~~~~~~~l~~~~~~~~~~~ 300 (338)
T 2o7r_A 225 FVLDLIWELSLPMGADRDHEYCNPTAESEPLYSFDKIRSLGWRVMVVGCHGDPMID----RQMELAERLEKKGVDVVAQF 300 (338)
T ss_dssp HHHHHHHHHHSCTTCCTTSTTTCCC----CCTHHHHHHHHTCEEEEEEETTSTTHH----HHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCCcccccHhhhcCCCCCEEEEECCCCcchH----HHHHHHHHHHHCCCcEEEEE
Confidence 0000011100 0000011211 112345699999999998863 56788999999999999999
Q ss_pred eCCCCccCCC--cccHHHHHHHHHHHHHHhcc
Q 002209 870 LPFESHGYAA--RESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 870 ~~~~~H~~~~--~~~~~~~~~~i~~fl~~~l~ 899 (953)
+++++|.+.. .+....+.+.+.+||.+++.
T Consensus 301 ~~g~gH~~~~~~~~~~~~~~~~i~~Fl~~~~~ 332 (338)
T 2o7r_A 301 DVGGYHAVKLEDPEKAKQFFVILKKFVVDSCT 332 (338)
T ss_dssp ESSCCTTGGGTCHHHHHHHHHHHHHHHC----
T ss_pred ECCCceEEeccChHHHHHHHHHHHHHHHhhcc
Confidence 9999998742 23346788999999988764
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-18 Score=182.11 Aligned_cols=227 Identities=17% Similarity=0.120 Sum_probs=159.9
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEc
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (953)
.+.+.+. .+|.++.++++.|.+ .+.|+||++||+... ............|+++||.|+.+
T Consensus 22 ~~~~~~~-~~g~~l~~~~~~p~~------~~~p~vv~~HG~~~~-------------~~~~~~~~~~~~l~~~G~~v~~~ 81 (270)
T 3pfb_A 22 MATITLE-RDGLQLVGTREEPFG------EIYDMAIIFHGFTAN-------------RNTSLLREIANSLRDENIASVRF 81 (270)
T ss_dssp EEEEEEE-ETTEEEEEEEEECSS------SSEEEEEEECCTTCC-------------TTCHHHHHHHHHHHHTTCEEEEE
T ss_pred ceEEEec-cCCEEEEEEEEcCCC------CCCCEEEEEcCCCCC-------------ccccHHHHHHHHHHhCCcEEEEE
Confidence 4455554 589999999998864 237999999996321 01111224556788899999995
Q ss_pred CCCCCCCCCChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC
Q 002209 719 PTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (953)
Q Consensus 719 ~~~~~~G~G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~ 796 (953)
|+ +|+|.+... .......++|+.++++++.++... ++++|+|||+||.+++.++.++|++++++|+++|..+.
T Consensus 82 d~---~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~--~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~ 156 (270)
T 3pfb_A 82 DF---NGHGDSDGKFENMTVLNEIEDANAILNYVKTDPHV--RNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATL 156 (270)
T ss_dssp CC---TTSTTSSSCGGGCCHHHHHHHHHHHHHHHHTCTTE--EEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTHH
T ss_pred cc---ccccCCCCCCCccCHHHHHHhHHHHHHHHHhCcCC--CeEEEEEeCchhHHHHHHHHhCchhhcEEEEecccccc
Confidence 55 567766443 223567789999999999876433 49999999999999999999999999999999987531
Q ss_pred CC------------CCcCccc----cc-chhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHH
Q 002209 797 TL------------TPFGFQN----ED-RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (953)
Q Consensus 797 ~~------------~~~~~~~----~~-~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~ 859 (953)
.. .+..... .. .........+...++...+.++++|+|+++|++|..+| ++.+.++++.++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~ 234 (270)
T 3pfb_A 157 KGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVS--PNASKKYDQIYQ 234 (270)
T ss_dssp HHHHHHTEETTEECCTTSCCSEEEETTEEEEHHHHHHHHHCCHHHHHTTCCSCEEEEEETTCSSSC--THHHHHHHHHCS
T ss_pred chhhhhhhhhccccCcccccccccccccccchhHhhcccccCHHHHHhhCCccEEEEEcCCCCCCC--HHHHHHHHHhCC
Confidence 10 0000000 00 00001122334445566778899999999999999998 888888877643
Q ss_pred hCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 860 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
.++++++++++|.+. .+....+.+.+.+||+++
T Consensus 235 ----~~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~~~ 267 (270)
T 3pfb_A 235 ----NSTLHLIEGADHCFS-DSYQKNAVNLTTDFLQNN 267 (270)
T ss_dssp ----SEEEEEETTCCTTCC-THHHHHHHHHHHHHHC--
T ss_pred ----CCeEEEcCCCCcccC-ccchHHHHHHHHHHHhhc
Confidence 479999999999875 556677888888888764
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-18 Score=188.95 Aligned_cols=238 Identities=16% Similarity=0.119 Sum_probs=160.0
Q ss_pred CCCceEEEEEEcCCCcEEEEEEEcCCCCCC------------CCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccc
Q 002209 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDP------------SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS 702 (953)
Q Consensus 635 ~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~------------~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~ 702 (953)
..+..+.+.+.. +..+.+.+|.|++... ...++.|+||++|||.+..+. ... ....
T Consensus 68 ~~v~~~dv~~~~--~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~--------~~~--~~~~ 135 (351)
T 2zsh_A 68 DGVFSFDVLIDR--RINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSS--------ANS--AIYD 135 (351)
T ss_dssp TTEEEEEEEEET--TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCC--------TTB--HHHH
T ss_pred CCceEEEEEecC--CCCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCC--------Ccc--hhHH
Confidence 345566777765 4558889999976420 012458999999997543211 111 0012
Q ss_pred hHHHHHH-HcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcC----CCCCC-cEEEEEeChHHHHHHHH
Q 002209 703 TSVLLWL-ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG----VAHPS-KIAVGGHSYGAFMTANL 776 (953)
Q Consensus 703 ~~~~~la-~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~----~~d~~-~i~l~G~S~GG~~a~~~ 776 (953)
.....|+ ++||+|+.+|+++. +.. .+...++|+.++++|+.++. .+|.+ +++|+||||||.+|+.+
T Consensus 136 ~~~~~la~~~g~~vv~~d~rg~---~~~-----~~~~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~ 207 (351)
T 2zsh_A 136 TLCRRLVGLCKCVVVSVNYRRA---PEN-----PYPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNV 207 (351)
T ss_dssp HHHHHHHHHHTSEEEEECCCCT---TTS-----CTTHHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEecCCCC---CCC-----CCchhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHH
Confidence 3455677 78999999777543 322 12456789999999998754 47889 99999999999999999
Q ss_pred HHhCCC---cccEEEEcccCCCCCCCCcCcc---cc-------cchhhhhH------HHHHhcCcc----cccCCCCC-c
Q 002209 777 LAHAPH---LFCCGIARSGAYNRTLTPFGFQ---NE-------DRTLWEAT------STYVEMSPF----MSANKLKK-P 832 (953)
Q Consensus 777 a~~~p~---~~~a~v~~~~~~d~~~~~~~~~---~~-------~~~~~~~~------~~~~~~sp~----~~~~~i~~-P 832 (953)
+.++|+ +++++|+++|+++......... .. ....|... ......+|+ ..+.+++. |
T Consensus 208 a~~~~~~~~~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~pP 287 (351)
T 2zsh_A 208 ALRAGESGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPK 287 (351)
T ss_dssp HHHHHTTTCCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTSCCCTTCCCCE
T ss_pred HHHhhccCCCeeEEEEECCccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCccchhhCCCCC
Confidence 999887 8999999999876332110000 00 00001000 000001221 23444555 9
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC---cccHHHHHHHHHHHHHH
Q 002209 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA---RESIMHVLWETDRWLQK 896 (953)
Q Consensus 833 ~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~---~~~~~~~~~~i~~fl~~ 896 (953)
+||+||++|..+ .++.++++++++.+.+++++++++++|.+.. .+....+.+.+.+||++
T Consensus 288 ~Lii~G~~D~~~----~~~~~~~~~l~~~g~~~~~~~~~g~gH~~~~~~~~~~~~~~~~~i~~Fl~~ 350 (351)
T 2zsh_A 288 SLVVVAGLDLIR----DWQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNA 350 (351)
T ss_dssp EEEEEETTSTTH----HHHHHHHHHHHHTTCCEEEEEETTCCTTTTSSSCSHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCCcch----HHHHHHHHHHHHcCCCEEEEEECCCcEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 999999999874 3678899999999999999999999998754 25567788899999874
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-17 Score=200.12 Aligned_cols=330 Identities=13% Similarity=0.046 Sum_probs=202.7
Q ss_pred hhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCce
Q 002209 100 PEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE 179 (953)
Q Consensus 100 ~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~ 179 (953)
.++..++.....+. .+|||++++|...+ .+... ..||+.+.. + +..
T Consensus 61 ~~~~~~~~~~~~~~--p~~dG~~~~~~~~~----------------------~~~~~------~~l~~~~~~--~--~~~ 106 (695)
T 2bkl_A 61 ARFKELFYTDSVST--PSRRNGRFFYVRTH----------------------KDKEK------AILYWRQGE--S--GQE 106 (695)
T ss_dssp HHHHHHHSCCEECC--CEEETTEEEEEEEC----------------------TTCSS------CEEEEEEST--T--SCC
T ss_pred HHHHHhhccccCCC--CEEECCEEEEEEEc----------------------CCCeE------EEEEEEcCC--C--CCc
Confidence 34555665544444 45999999999875 11112 257887752 2 445
Q ss_pred eeeecCC---CC--CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecC
Q 002209 180 IEIQGFP---DG--AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN 254 (953)
Q Consensus 180 ~~l~~~~---~~--~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD 254 (953)
+.|+... .+ ..+..++|||||++|||..+.. +++...||++|+++|+..+....+... ...++||||
T Consensus 107 ~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~----G~~~~~i~v~dl~tg~~~~~~~~~~~~----~~~~~wspD 178 (695)
T 2bkl_A 107 KVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPN----AADEAVLHVIDVDSGEWSKVDVIEGGK----YATPKWTPD 178 (695)
T ss_dssp EEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEET----TCSCCEEEEEETTTCCBCSSCCBSCCT----TCCCEECTT
T ss_pred EEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCC----CCceEEEEEEECCCCCCcCCcccCccc----ccceEEecC
Confidence 5554211 11 1578899999999999988643 555689999999999865121112211 258999999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc--eeEeCCC
Q 002209 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGPP 331 (953)
Q Consensus 255 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~--~~~l~~~ 331 (953)
|+.|+|+..+..+. +. ..+ .....+||++++ ++. .+.+...
T Consensus 179 g~~l~~~~~d~~~~---------~~----------------------~~~-----~~~~~~v~~~~l~t~~~~~~lv~~~ 222 (695)
T 2bkl_A 179 SKGFYYEWLPTDPS---------IK----------------------VDE-----RPGYTTIRYHTLGTEPSKDTVVHER 222 (695)
T ss_dssp SSEEEEEECCCCTT---------SC----------------------GGG-----GGGGCEEEEEETTSCGGGCEEEECC
T ss_pred CCEEEEEEecCCCC---------Cc----------------------ccc-----CCCCCEEEEEECCCCchhceEEEec
Confidence 99999984322110 00 000 013467999999 665 2344332
Q ss_pred ----CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeec
Q 002209 332 ----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (953)
Q Consensus 332 ----~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ws 407 (953)
..+..+.|||||++|++.+.+.. ...+||+++..+++.+.|+.... ....+.|
T Consensus 223 ~~~~~~~~~~~~SpDG~~l~~~~~~~~---------~~~~l~~~~~~~~~~~~l~~~~~-------------~~~~~~~- 279 (695)
T 2bkl_A 223 TGDPTTFLQSDLSRDGKYLFVYILRGW---------SENDVYWKRPGEKDFRLLVKGVG-------------AKYEVHA- 279 (695)
T ss_dssp CCCTTCEEEEEECTTSCCEEEEEEETT---------TEEEEEEECTTCSSCEEEEECSS-------------CCEEEEE-
T ss_pred CCCCEEEEEEEECCCCCEEEEEEeCCC---------CceEEEEEcCCCCceEEeecCCC-------------ceEEEEe-
Confidence 35668999999999999986541 12378899877667777765321 1234556
Q ss_pred cCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc---eEEeec--ccccCCeeeccCCceEEEEEecccCceE
Q 002209 408 SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKL--DLRYGGISWCDDSLALVYESWYKTRRTR 482 (953)
Q Consensus 408 pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~---~~l~~~--~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 482 (953)
+||+ +++..+.. .....|+++++ ++++. +.+... ...+..++|+ + ..|++....+ ...+
T Consensus 280 ~~g~-l~~~s~~~---------~~~~~l~~~d~---~~~~~~~~~~l~~~~~~~~l~~~~~~-~-~~lv~~~~~d-g~~~ 343 (695)
T 2bkl_A 280 WKDR-FYVLTDEG---------APRQRVFEVDP---AKPARASWKEIVPEDSSASLLSVSIV-G-GHLSLEYLKD-ATSE 343 (695)
T ss_dssp ETTE-EEEEECTT---------CTTCEEEEEBT---TBCSGGGCEEEECCCSSCEEEEEEEE-T-TEEEEEEEET-TEEE
T ss_pred cCCc-EEEEECCC---------CCCCEEEEEeC---CCCCccCCeEEecCCCCCeEEEEEEE-C-CEEEEEEEEC-CEEE
Confidence 7888 66653221 23568999996 44442 555443 3345667887 4 4555555444 3368
Q ss_pred EEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCC
Q 002209 483 TWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTG 562 (953)
Q Consensus 483 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~ 562 (953)
||+++++++ ....+.-.....+.. ++++|||+.++|...+.. ....||+||++++
T Consensus 344 l~~~~~~g~--~~~~l~~~~~~~v~~------~~~s~d~~~l~~~~ss~~-----------------~P~~v~~~d~~~g 398 (695)
T 2bkl_A 344 VRVATLKGK--PVRTVQLPGVGAASN------LMGLEDLDDAYYVFTSFT-----------------TPRQIYKTSVSTG 398 (695)
T ss_dssp EEEEETTCC--EEEECCCSSSSEECC------CBSCTTCSEEEEEEEETT-----------------EEEEEEEEETTTC
T ss_pred EEEEeCCCC--eeEEecCCCCeEEEE------eecCCCCCEEEEEEcCCC-----------------CCCEEEEEECCCC
Confidence 999998653 223332111222222 568999999988874321 1335999999999
Q ss_pred ceEEEeccC
Q 002209 563 SKERIWESD 571 (953)
Q Consensus 563 ~~~~l~~~~ 571 (953)
+.+.+....
T Consensus 399 ~~~~l~~~~ 407 (695)
T 2bkl_A 399 KSELWAKVD 407 (695)
T ss_dssp CEEEEEECC
T ss_pred cEEEEecCC
Confidence 987776544
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-18 Score=187.97 Aligned_cols=234 Identities=17% Similarity=0.140 Sum_probs=163.2
Q ss_pred ceEEE-EEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 638 QKELI-KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 638 ~~~~~-~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
..+.+ .+...+|..+.++++.|.+ .+.|+||++||+.... . ........|+++||.|+
T Consensus 33 ~~~~~~~~~~~dg~~l~~~~~~p~~------~~~p~vv~~HG~~~~~-----------~----~~~~~~~~l~~~g~~vi 91 (342)
T 3hju_A 33 PYQDLPHLVNADGQYLFCRYWKPTG------TPKALIFVSHGAGEHS-----------G----RYEELARMLMGLDLLVF 91 (342)
T ss_dssp BTTSSCEEECTTSCEEEEEEECCSS------CCSEEEEEECCTTCCG-----------G----GGHHHHHHHHTTTEEEE
T ss_pred ccccCceEEccCCeEEEEEEeCCCC------CCCcEEEEECCCCccc-----------c----hHHHHHHHHHhCCCeEE
Confidence 33444 6788899999999998863 2479999999963211 0 11245667788899999
Q ss_pred EcCCCCCCCCCChhhh---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 717 GGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
.+|+ +|+|.+... .......++|+.++++++... .+..+++|+|||+||.+++.++.++|++++++|+++|.
T Consensus 92 ~~D~---~G~G~S~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~ 166 (342)
T 3hju_A 92 AHDH---VGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPL 166 (342)
T ss_dssp EECC---TTSTTSCSSTTCCSCTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCC
T ss_pred EEcC---CCCcCCCCcCCCcCcHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECcc
Confidence 9555 577776432 233567789999999999877 34569999999999999999999999999999999987
Q ss_pred CCCCCCCcC------------------ccccc-ch---hhhhHHHHHh---------------------cCcccccCCCC
Q 002209 794 YNRTLTPFG------------------FQNED-RT---LWEATSTYVE---------------------MSPFMSANKLK 830 (953)
Q Consensus 794 ~d~~~~~~~------------------~~~~~-~~---~~~~~~~~~~---------------------~sp~~~~~~i~ 830 (953)
......... ..... .. .......+.. ......+.+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 246 (342)
T 3hju_A 167 VLANPESATTFKVLAAKVLNLVLPNLSLGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLT 246 (342)
T ss_dssp CSCCTTTTSHHHHHHHHHHHHHCTTCBCCCCCGGGSCSCHHHHHHHHTCTTCCCSCCBHHHHHHHHHHHHHHHHHGGGCC
T ss_pred cccchhhhhHHHHHHHHHHHHhccccccCcccccccccchHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHhCC
Confidence 653211000 00000 00 0000000000 01124467789
Q ss_pred CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc--ccHHHHHHHHHHHHHHhccCC
Q 002209 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR--ESIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 831 ~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~--~~~~~~~~~i~~fl~~~l~~~ 901 (953)
+|+|+++|++|..++ ++.+.++++.+.. ..+++++++++||.+... +....++..+++||++++...
T Consensus 247 ~Pvlii~G~~D~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (342)
T 3hju_A 247 VPFLLLQGSADRLCD--SKGAYLLMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTATA 315 (342)
T ss_dssp SCEEEEEETTCSSSC--HHHHHHHHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCEEEEEeCCCcccC--hHHHHHHHHHcCC--CCceEEEECCCCchhhcCChHHHHHHHHHHHHHHhcccCCC
Confidence 999999999999998 8888888887753 257999999999987432 224567788999999998643
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=188.30 Aligned_cols=237 Identities=20% Similarity=0.192 Sum_probs=163.4
Q ss_pred CCCceEEEEEEcCCCc-EEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cC
Q 002209 635 ASLQKELIKYQRKDGV-QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RG 712 (953)
Q Consensus 635 ~~~~~~~~~~~~~dg~-~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G 712 (953)
..+..+.+++.+.+|. .+.+++|.|++. .++.|+||++|||.+..+ ....+ ......|++ .|
T Consensus 47 ~~~~~~~~~i~~~~g~~~l~~~~~~P~~~----~~~~p~vv~~HGgg~~~g--------~~~~~----~~~~~~la~~~G 110 (323)
T 1lzl_A 47 DGVSLRELSAPGLDGDPEVKIRFVTPDNT----AGPVPVLLWIHGGGFAIG--------TAESS----DPFCVEVARELG 110 (323)
T ss_dssp TTEEEEEEEECCSTTCCCEEEEEEEESSC----CSCEEEEEEECCSTTTSC--------CGGGG----HHHHHHHHHHHC
T ss_pred CCceEEEEEecCCCCCceeEEEEEecCCC----CCCCcEEEEECCCccccC--------Chhhh----HHHHHHHHHhcC
Confidence 3456788999988887 899999999741 235899999999753221 11111 234556776 59
Q ss_pred cEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCCC----ccc
Q 002209 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFC 785 (953)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~ 785 (953)
|.|+.+|++ |.|.+. +...+.|+.++++|+.+. ..+|+++|+|+|||+||++++.++.+.++ .++
T Consensus 111 ~~Vv~~d~r---g~~~~~-----~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~ 182 (323)
T 1lzl_A 111 FAVANVEYR---LAPETT-----FPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVA 182 (323)
T ss_dssp CEEEEECCC---CTTTSC-----TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCC
T ss_pred cEEEEecCC---CCCCCC-----CCchHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCee
Confidence 999996664 555442 234577888999998774 23678899999999999999999988654 499
Q ss_pred EEEEcccCCCCCCCCcCccc-ccchhhh------hHHHHH--------------hcCcccccCCCC--CcEEEEEeCCCC
Q 002209 786 CGIARSGAYNRTLTPFGFQN-EDRTLWE------ATSTYV--------------EMSPFMSANKLK--KPILLVHGEEDN 842 (953)
Q Consensus 786 a~v~~~~~~d~~~~~~~~~~-~~~~~~~------~~~~~~--------------~~sp~~~~~~i~--~P~Li~~G~~D~ 842 (953)
++|+++|+.+.......+.. .....+. ....|. ..+|+.. ..+. +|+||+||++|.
T Consensus 183 ~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~~~~~~~P~li~~G~~D~ 261 (323)
T 1lzl_A 183 FQFLEIPELDDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRA-TDLTGLPPTYLSTMELDP 261 (323)
T ss_dssp EEEEESCCCCTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGC-SCCTTCCCEEEEEETTCT
T ss_pred EEEEECCccCCCcCchhHHHhccCCCCCHHHHHHHHHHhCCCCcccccccCCCcccCcccC-cccCCCChhheEECCcCC
Confidence 99999998775432100000 0000000 001111 1122221 1232 699999999998
Q ss_pred CCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc---ccHHHHHHHHHHHHHHhccC
Q 002209 843 NSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR---ESIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 843 ~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~---~~~~~~~~~i~~fl~~~l~~ 900 (953)
. ..++.+++++++..|+++++++|||++|++... +....+.+.+.+||.+++..
T Consensus 262 ~----~~~~~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 318 (323)
T 1lzl_A 262 L----RDEGIEYALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLRS 318 (323)
T ss_dssp T----HHHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTCC
T ss_pred c----hHHHHHHHHHHHHcCCCEEEEEeCcCccCcccCccCHHHHHHHHHHHHHHHHHhcc
Confidence 6 467889999999999999999999999986422 23567889999999998853
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-18 Score=180.50 Aligned_cols=205 Identities=17% Similarity=0.156 Sum_probs=152.9
Q ss_pred CceEEEEEEcC--CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcE
Q 002209 637 LQKELIKYQRK--DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (953)
Q Consensus 637 ~~~~~~~~~~~--dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (953)
+..+.+++... +|.. .+.+|+|... . +++.|+||++||..... ..| ......|+++||.
T Consensus 23 ~~~~~~~~~~~~~~~~~-~~~l~~p~~~-~--~~~~p~vv~~HG~~~~~-----------~~~----~~~~~~l~~~G~~ 83 (262)
T 1jfr_A 23 YATSQTSVSSLVASGFG-GGTIYYPTST-A--DGTFGAVVISPGFTAYQ-----------SSI----AWLGPRLASQGFV 83 (262)
T ss_dssp SCEEEEEECTTTCSSSC-CEEEEEESCC-T--TCCEEEEEEECCTTCCG-----------GGT----TTHHHHHHTTTCE
T ss_pred CCccceEecceeccCCC-ceeEEecCCC-C--CCCCCEEEEeCCcCCCc-----------hhH----HHHHHHHHhCCCE
Confidence 34566666654 3332 4677888652 1 23589999999963111 111 2346678889999
Q ss_pred EEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHH----cCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEc
Q 002209 715 ILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVR----RGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (953)
Q Consensus 715 V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~----~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (953)
|+.+++ +|+|.+. .....|+.++++++.+ ...++.++++|+||||||.+++.++.++|+ ++++|++
T Consensus 84 v~~~d~---~g~g~~~------~~~~~d~~~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~ 153 (262)
T 1jfr_A 84 VFTIDT---NTTLDQP------DSRGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPL 153 (262)
T ss_dssp EEEECC---SSTTCCH------HHHHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEE
T ss_pred EEEeCC---CCCCCCC------chhHHHHHHHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEee
Confidence 999666 4666542 2345678888999987 445677899999999999999999999987 9999998
Q ss_pred ccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHH-HHHHHHHHHhCCCcEEEEE
Q 002209 791 SGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQ-SDRFFNALKGHGALCRLVI 869 (953)
Q Consensus 791 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~-~~~~~~~l~~~g~~~~~~~ 869 (953)
+|... ...+.++++|+|++||++|..++ ++. ++++++.++ .+.++++++
T Consensus 154 ~p~~~---------------------------~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~l~-~~~~~~~~~ 203 (262)
T 1jfr_A 154 TGWNT---------------------------DKTWPELRTPTLVVGADGDTVAP--VATHSKPFYESLP-GSLDKAYLE 203 (262)
T ss_dssp SCCCS---------------------------CCCCTTCCSCEEEEEETTCSSSC--TTTTHHHHHHHSC-TTSCEEEEE
T ss_pred cccCc---------------------------cccccccCCCEEEEecCccccCC--chhhHHHHHHHhh-cCCCceEEE
Confidence 87532 23445678999999999999998 888 999999884 356789999
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHHHHhccCC
Q 002209 870 LPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 870 ~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (953)
+++++|.+.. +....+.+.+.+||+++++..
T Consensus 204 ~~~~~H~~~~-~~~~~~~~~i~~fl~~~l~~~ 234 (262)
T 1jfr_A 204 LRGASHFTPN-TSDTTIAKYSISWLKRFIDSD 234 (262)
T ss_dssp ETTCCTTGGG-SCCHHHHHHHHHHHHHHHSCC
T ss_pred eCCCCcCCcc-cchHHHHHHHHHHHHHHhcCc
Confidence 9999998753 344678899999999998654
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=188.03 Aligned_cols=229 Identities=17% Similarity=0.137 Sum_probs=152.3
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEE
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAI 715 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V 715 (953)
...+.+++ +|..+ |.|++. . ...|+||++|||.+..+ +... .......|++ .||+|
T Consensus 58 ~~~~~~~~---~g~~~----~~p~~~--~--~~~~~vv~~HGgg~~~g--------~~~~----~~~~~~~la~~~g~~v 114 (322)
T 3k6k_A 58 VELTLTDL---GGVPC----IRQATD--G--AGAAHILYFHGGGYISG--------SPST----HLVLTTQLAKQSSATL 114 (322)
T ss_dssp CEEEEEEE---TTEEE----EEEECT--T--CCSCEEEEECCSTTTSC--------CHHH----HHHHHHHHHHHHTCEE
T ss_pred ceEEEEEE---CCEeE----EecCCC--C--CCCeEEEEEcCCcccCC--------ChHH----HHHHHHHHHHhcCCEE
Confidence 33444444 66555 456541 1 12455999999753221 1011 1223455665 49999
Q ss_pred EEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc----ccEEEEcc
Q 002209 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL----FCCGIARS 791 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~ 791 (953)
+.+++++. +.. .+...++|+.++++|+.++ .+|+++|+|+|+|+||.+|+.++.+.|+. ++++|+++
T Consensus 115 ~~~dyr~~---~~~-----~~~~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~ 185 (322)
T 3k6k_A 115 WSLDYRLA---PEN-----PFPAAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLS 185 (322)
T ss_dssp EEECCCCT---TTS-----CTTHHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEES
T ss_pred EEeeCCCC---CCC-----CCchHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 99777543 222 1245678999999999887 46889999999999999999999987654 99999999
Q ss_pred cCCCCCCCCcCcccc-cc-------hhhhhHHHHH--------hcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHH
Q 002209 792 GAYNRTLTPFGFQNE-DR-------TLWEATSTYV--------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (953)
Q Consensus 792 ~~~d~~~~~~~~~~~-~~-------~~~~~~~~~~--------~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~ 855 (953)
|+.+.......+... .. ........|. ..+|+....+...|+||+||++|.. ..++.+++
T Consensus 186 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~G~~D~~----~~~~~~~~ 261 (322)
T 3k6k_A 186 PFVDLTLSRWSNSNLADRDFLAEPDTLGEMSELYVGGEDRKNPLISPVYADLSGLPEMLIHVGSEEAL----LSDSTTLA 261 (322)
T ss_dssp CCCCTTCCSHHHHHTGGGCSSSCHHHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEESSCTT----HHHHHHHH
T ss_pred CCcCcccCccchhhccCCCCcCCHHHHHHHHHHhcCCCCCCCCcCCcccccccCCCcEEEEECCcCcc----HHHHHHHH
Confidence 988754322111000 00 0000011111 1244443333457999999999976 57889999
Q ss_pred HHHHhCCCcEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHhccCC
Q 002209 856 NALKGHGALCRLVILPFESHGYAA----RESIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 856 ~~l~~~g~~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~fl~~~l~~~ 901 (953)
++++..|+++++++||+++|.+.. .+....+.+.+.+||.++++..
T Consensus 262 ~~l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~ 311 (322)
T 3k6k_A 262 ERAGAAGVSVELKIWPDMPHVFQMYGKFVNAADISIKEICHWISARISKL 311 (322)
T ss_dssp HHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHCCCCEEEEEECCCccccccccccChHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998743 2346688899999999998654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.2e-17 Score=177.17 Aligned_cols=301 Identities=10% Similarity=0.014 Sum_probs=193.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccc---------cceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCcee
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARP---------EEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~ 180 (953)
.+..++|||||+.+++............... ......+.+++++....... .+.|.+|++..........
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~ 89 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS 89 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSE
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeee
Confidence 4667889999999987765432222111111 12234566666654444333 5789999996433222222
Q ss_pred eeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeec--ccCCCccccccccceEEecCCeEE
Q 002209 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNNSTLL 258 (953)
Q Consensus 181 ~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~~~~wspDg~~l 258 (953)
.+........+....|+|||+.|+.... ...|.++++++++.... ...... .+..+.|+|||+.|
T Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l 156 (337)
T 1gxr_A 90 QLDCLNRDNYIRSCKLLPDGCTLIVGGE---------ASTLSIWDLAAPTPRIKAELTSSAP----ACYALAISPDSKVC 156 (337)
T ss_dssp EEECSCTTSBEEEEEECTTSSEEEEEES---------SSEEEEEECCCC--EEEEEEECSSS----CEEEEEECTTSSEE
T ss_pred cccccCCCCcEEEEEEcCCCCEEEEEcC---------CCcEEEEECCCCCcceeeecccCCC----ceEEEEECCCCCEE
Confidence 2221123347889999999999988652 56888999988763222 111221 16689999999998
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-Cccc
Q 002209 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYT 335 (953)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~ 335 (953)
+... ..+.|.++++ +++. ..+... ..+.
T Consensus 157 ~~~~-------------------------------------------------~dg~v~~~d~~~~~~~~~~~~~~~~i~ 187 (337)
T 1gxr_A 157 FSCC-------------------------------------------------SDGNIAVWDLHNQTLVRQFQGHTDGAS 187 (337)
T ss_dssp EEEE-------------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEe-------------------------------------------------CCCcEEEEeCCCCceeeeeecccCceE
Confidence 8761 2245778888 6654 344433 7788
Q ss_pred ccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002209 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (953)
Q Consensus 336 ~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~ 415 (953)
.++|+|||++|+....+ +.|.+||+..+......... ..+..++|+|||+.++.
T Consensus 188 ~~~~~~~~~~l~~~~~d-------------g~i~~~d~~~~~~~~~~~~~-------------~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 188 CIDISNDGTKLWTGGLD-------------NTVRSWDLREGRQLQQHDFT-------------SQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEECS-------------SCEEEEEECTTSSEEEE
T ss_pred EEEECCCCCEEEEEecC-------------CcEEEEECCCCceEeeecCC-------------CceEEEEECCCCCEEEE
Confidence 99999999999988744 38999999866544332221 23467899999997776
Q ss_pred EEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCc
Q 002209 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP 495 (953)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 495 (953)
. +..+.++++++ ..++...+..+...+..+.|+|||+.|+....++ .+.++++.++ +.
T Consensus 242 ~-------------~~~~~i~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~~~~~~~--~~ 299 (337)
T 1gxr_A 242 G-------------MESSNVEVLHV---NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN----LLNAWRTPYG--AS 299 (337)
T ss_dssp E-------------ETTSCEEEEET---TSSCEEEECCCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTC--CE
T ss_pred E-------------cCCCcEEEEEC---CCCCeEEEcCCccceeEEEECCCCCEEEEecCCC----cEEEEECCCC--eE
Confidence 6 34567899996 5555555666667788899999999988776543 5666777664 22
Q ss_pred EEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 496 RILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 496 ~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
..... ....+.. +.|+|||++|+...
T Consensus 300 ~~~~~-~~~~v~~------~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 300 IFQSK-ESSSVLS------CDISVDDKYIVTGS 325 (337)
T ss_dssp EEEEE-CSSCEEE------EEECTTSCEEEEEE
T ss_pred EEEec-CCCcEEE------EEECCCCCEEEEec
Confidence 22221 2222222 78999999988776
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-17 Score=176.32 Aligned_cols=220 Identities=17% Similarity=0.137 Sum_probs=150.0
Q ss_pred CceEEEEEEcC-CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCc---cchHHHHHHHc-
Q 002209 637 LQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI---GSTSVLLWLAR- 711 (953)
Q Consensus 637 ~~~~~~~~~~~-dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~la~~- 711 (953)
...+.+++.+. +|..+.+++|+|+++.+.+ ++|+||++||+..... .|... .......|+++
T Consensus 30 g~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~--~~P~vv~lHG~g~~~~-----------~~~~~~~~~~~~~~~l~~~g 96 (268)
T 1jjf_A 30 GQVVNISYFSTATNSTRPARVYLPPGYSKDK--KYSVLYLLHGIGGSEN-----------DWFEGGGRANVIADNLIAEG 96 (268)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECTTCCTTS--CBCEEEEECCTTCCTT-----------TTTTTTTCHHHHHHHHHHTT
T ss_pred ceEEEEEEeccccCCceEEEEEeCCCCCCCC--CccEEEEECCCCCCcc-----------hhhhccccHHHHHHHHHHcC
Confidence 45677788764 5788999999999875533 5999999999742211 12111 11234566765
Q ss_pred ---CcEEEEcCCCCCCCCCChhhhhhhHHHHHHH-HHHHHHHHHHcCCC--CCCcEEEEEeChHHHHHHHHHHhCCCccc
Q 002209 712 ---GFAILGGPTTPIIGEGDEEANDRFVEQLVAC-AEAAVEEVVRRGVA--HPSKIAVGGHSYGAFMTANLLAHAPHLFC 785 (953)
Q Consensus 712 ---G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D-~~~~~~~l~~~~~~--d~~~i~l~G~S~GG~~a~~~a~~~p~~~~ 785 (953)
||+|+.+++++. +.... ..+ .....+ +.++++++.++..+ |+++++|+|+||||++++.++.++|++|+
T Consensus 97 ~~~~~~vv~~d~~~~---~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~ 171 (268)
T 1jjf_A 97 KIKPLIIVTPNTNAA---GPGIA-DGY-ENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFA 171 (268)
T ss_dssp SSCCCEEEEECCCCC---CTTCS-CHH-HHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCS
T ss_pred CCCCEEEEEeCCCCC---Ccccc-ccH-HHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhh
Confidence 599999777543 22111 111 222233 44566677665444 78999999999999999999999999999
Q ss_pred EEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCC-cEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc
Q 002209 786 CGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (953)
Q Consensus 786 a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~-P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (953)
++++++|..+..... ..+.... .....+. |+|++||+.|..+| . +++++++|++.|++
T Consensus 172 ~~v~~s~~~~~~~~~--------~~~~~~~---------~~~~~~~pp~li~~G~~D~~v~--~--~~~~~~~l~~~g~~ 230 (268)
T 1jjf_A 172 YIGPISAAPNTYPNE--------RLFPDGG---------KAAREKLKLLFIACGTNDSLIG--F--GQRVHEYCVANNIN 230 (268)
T ss_dssp EEEEESCCTTSCCHH--------HHCTTTT---------HHHHHHCSEEEEEEETTCTTHH--H--HHHHHHHHHHTTCC
T ss_pred heEEeCCCCCCCchh--------hhcCcch---------hhhhhcCceEEEEecCCCCCcc--H--HHHHHHHHHHCCCc
Confidence 999999976532100 0000000 0011224 59999999999875 3 77899999999999
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 865 CRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 865 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
++++++|+++|.+. .....+..+++||.++.
T Consensus 231 ~~~~~~~g~~H~~~---~~~~~~~~~~~~l~~~~ 261 (268)
T 1jjf_A 231 HVYWLIQGGGHDFN---VWKPGLWNFLQMADEAG 261 (268)
T ss_dssp CEEEEETTCCSSHH---HHHHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCcCHh---HHHHHHHHHHHHHHhcC
Confidence 99999999999873 23455678899998874
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-19 Score=194.97 Aligned_cols=209 Identities=16% Similarity=0.153 Sum_probs=147.3
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEc
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (953)
...+.|. +..+...+|.|.+. .++.|+||++|||.+..+.. ..+ ...+..|+++||+|+.+
T Consensus 58 ~~~i~y~---~~~~~~~~~~p~~~----~~~~p~vv~~HGgg~~~~~~--------~~~----~~~~~~l~~~G~~v~~~ 118 (303)
T 4e15_A 58 VDHLRYG---EGRQLVDVFYSEKT----TNQAPLFVFVHGGYWQEMDM--------SMS----CSIVGPLVRRGYRVAVM 118 (303)
T ss_dssp EEEEECS---STTCEEEEEECTTC----CTTCCEEEEECCSTTTSCCG--------GGS----CTTHHHHHHTTCEEEEE
T ss_pred eeeeccC---CCCcEEEEEecCCC----CCCCCEEEEECCCcCcCCCh--------hHH----HHHHHHHHhCCCEEEEe
Confidence 3455554 33456778888641 23589999999975433211 111 12356788999999997
Q ss_pred CCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCC-------cccEEEEc
Q 002209 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPH-------LFCCGIAR 790 (953)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-------~~~a~v~~ 790 (953)
+++ |.+.. .....+.|+.++++++.+. ...+.++|+|+||||||++++.++.+.+. +++++|++
T Consensus 119 d~r---~~~~~-----~~~~~~~d~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~ 190 (303)
T 4e15_A 119 DYN---LCPQV-----TLEQLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFL 190 (303)
T ss_dssp CCC---CTTTS-----CHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEE
T ss_pred cCC---CCCCC-----ChhHHHHHHHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEE
Confidence 775 33332 2356788999999999773 23457899999999999999999986542 79999999
Q ss_pred ccCCCCCCCCcCc-ccccchhhhhHHHHHhcCcc-cccCCC----CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc
Q 002209 791 SGAYNRTLTPFGF-QNEDRTLWEATSTYVEMSPF-MSANKL----KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (953)
Q Consensus 791 ~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~sp~-~~~~~i----~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (953)
+|+++........ ...........+.+...+|+ ..+..+ ++|+||+||++|..|+ ..++.+++++++..|.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~P~lii~G~~D~~v~--~~~~~~~~~~l~~~g~~ 268 (303)
T 4e15_A 191 CGVYDLRELSNLESVNPKNILGLNERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTF--IEQSRHYADVLRKKGYK 268 (303)
T ss_dssp SCCCCCHHHHTCTTTSGGGTTCCCTTTTTTTCGGGCCCCCGGGGTTSEEEEEEEEESCHHH--HHHHHHHHHHHHHHTCC
T ss_pred eeeeccHhhhcccccchhhhhcCCHHHHHHcCchhhcccccccCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHHCCCc
Confidence 9987742211000 00011111122334556777 566655 8999999999999988 99999999999999999
Q ss_pred EEEEEeCCCCcc
Q 002209 865 CRLVILPFESHG 876 (953)
Q Consensus 865 ~~~~~~~~~~H~ 876 (953)
++++++|+++|.
T Consensus 269 ~~~~~~~g~~H~ 280 (303)
T 4e15_A 269 ASFTLFKGYDHF 280 (303)
T ss_dssp EEEEEEEEEETT
T ss_pred eEEEEeCCCCch
Confidence 999999999994
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-17 Score=175.27 Aligned_cols=270 Identities=14% Similarity=0.137 Sum_probs=183.7
Q ss_pred CCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhh
Q 002209 216 SSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTF 295 (953)
Q Consensus 216 ~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (953)
.....|+++|+++++.+.+...... +..++|+|||+.|++.
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~-----v~~~~~spdg~~l~~~---------------------------------- 59 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPEL-----FEAPNWSPDGKYLLLN---------------------------------- 59 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSC-----CEEEEECTTSSEEEEE----------------------------------
T ss_pred CcceeEEEEeCCCCceeeeccCCcc-----eEeeEECCCCCEEEEE----------------------------------
Confidence 3467899999999988877665432 6789999999999976
Q ss_pred hhhcCCcchhhhhhhhccceEEEEEc-C-CceeEeCCC---CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEE
Q 002209 296 QDLLKDEYDEDLFDYYATTQLVLVSL-D-GTVKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (953)
Q Consensus 296 ~~~~~~~~d~~~~~~~~~~~l~~~~~-~-g~~~~l~~~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~ 370 (953)
....|+++++ + ++...+... ..+..++|||||++|++...... ....||.
T Consensus 60 ----------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~---------~~~~l~~ 114 (297)
T 2ojh_A 60 ----------------SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEF---------GKSAIYL 114 (297)
T ss_dssp ----------------ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTT---------SSCEEEE
T ss_pred ----------------cCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCC---------CcceEEE
Confidence 2357889999 7 777776643 45678999999999999884321 1237888
Q ss_pred EeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE
Q 002209 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (953)
Q Consensus 371 ~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~ 450 (953)
++++++..+.+.... ....++|+|||+.++|.... +..-.||.+++ .+++...
T Consensus 115 ~~~~~~~~~~~~~~~--------------~~~~~~~spdg~~l~~~~~~----------~~~~~l~~~~~---~~~~~~~ 167 (297)
T 2ojh_A 115 LPSTGGTPRLMTKNL--------------PSYWHGWSPDGKSFTYCGIR----------DQVFDIYSMDI---DSGVETR 167 (297)
T ss_dssp EETTCCCCEECCSSS--------------SEEEEEECTTSSEEEEEEEE----------TTEEEEEEEET---TTCCEEE
T ss_pred EECCCCceEEeecCC--------------CccceEECCCCCEEEEEECC----------CCceEEEEEEC---CCCcceE
Confidence 888877666655432 13467899999988876322 12236777774 5666666
Q ss_pred EeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 451 LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 451 l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
+......+..+.|+|||+.|++....+. ..+||.++..++ ....+.... ..+.. +.|+|||++|++...+
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~-~~~i~~~~~~~~--~~~~~~~~~-~~~~~------~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSRTG-QMQIWRVRVDGS--SVERITDSA-YGDWF------PHPSPSGDKVVFVSYD 237 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECTTS-SCEEEEEETTSS--CEEECCCCS-EEEEE------EEECTTSSEEEEEEEE
T ss_pred cccCCCccccceECCCCCEEEEEecCCC-CccEEEECCCCC--CcEEEecCC-cccCC------eEECCCCCEEEEEEcC
Confidence 7666667788999999999998875432 358999997764 333333222 11222 7899999999998754
Q ss_pred ccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecC
Q 002209 531 ENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESK 605 (953)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 605 (953)
.... ..+......|++||+.+++.+.+....+. .......+|+|||+.+++.....
T Consensus 238 ~~~~----------~~~~~~~~~l~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 238 ADVF----------DHPRDLDVRVQLMDMDGGNVETLFDLFGG---------QGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TTCC----------SCCSSEEEEEEEEETTSCSCEEEEEEEES---------TTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCC----------cccccCceEEEEEecCCCCceeeeccCCC---------CcccccceECCCCCEEEEEEecc
Confidence 3100 00000124699999999887776542211 01112367999999998877654
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-18 Score=181.39 Aligned_cols=242 Identities=14% Similarity=0.026 Sum_probs=154.8
Q ss_pred CceEEEEEEcC-CCcEEEEEEEcCCCCCC--CCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCc
Q 002209 637 LQKELIKYQRK-DGVQLSATLYLPPGYDP--SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (953)
Q Consensus 637 ~~~~~~~~~~~-dg~~~~~~l~~P~~~~~--~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (953)
|..+.+++.+. .|..+.+++|+|++++. ..++++|+||++||+.... ..+.... .....+.+.||
T Consensus 5 m~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~~-----------~~~~~~~-~~~~~~~~~~~ 72 (263)
T 2uz0_A 5 PAVMKIEYYSQVLDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGNH-----------NSWLKRT-NVERLLRGTNL 72 (263)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECC---------CCBCEEEEECCTTCCT-----------THHHHHS-CHHHHTTTCCC
T ss_pred ceEeEEEEechhhCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCCH-----------HHHHhcc-CHHHHHhcCCe
Confidence 55677777754 67899999999987621 1124589999999964211 1111000 11222345799
Q ss_pred EEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 714 ~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
+|+.+++.+. ++........+.....+|+...++.+..+..+|+++++|+|||+||++++.++. +|++|+++|+++|.
T Consensus 73 ~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~~~ 150 (263)
T 2uz0_A 73 IVVMPNTSNG-WYTDTQYGFDYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFSGA 150 (263)
T ss_dssp EEEECCCTTS-TTSBCTTSCBHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEESCC
T ss_pred EEEEECCCCC-ccccCCCcccHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEecCC
Confidence 9998665322 221111122334556677777776654423467889999999999999999999 88999999999998
Q ss_pred CCCCCCCcCcccc-cchhhh------hHHHHHhcCcccccCCCC--CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc
Q 002209 794 YNRTLTPFGFQNE-DRTLWE------ATSTYVEMSPFMSANKLK--KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (953)
Q Consensus 794 ~d~~~~~~~~~~~-~~~~~~------~~~~~~~~sp~~~~~~i~--~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (953)
.+........... ....+. ....+...+|...+.++. +|+|++||+.|..+ ..+++++++++..+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v----~~~~~~~~~l~~~g~~ 226 (263)
T 2uz0_A 151 LSFQNFSPESQNLGSPAYWRGVFGEIRDWTTSPYSLESLAKKSDKKTKLWAWCGEQDFLY----EANNLAVKNLKKLGFD 226 (263)
T ss_dssp CCSSSCCGGGTTCSCHHHHHHHHCCCSCTTTSTTSHHHHGGGCCSCSEEEEEEETTSTTH----HHHHHHHHHHHHTTCE
T ss_pred cchhhccccccccccchhHHHHcCChhhhccccCCHHHHHHhccCCCeEEEEeCCCchhh----HHHHHHHHHHHHCCCC
Confidence 7654321100000 000000 001122334555556664 79999999999875 4578999999999999
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccC
Q 002209 865 CRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 865 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (953)
+++++++| +|.+. ........+++||.++++.
T Consensus 227 ~~~~~~~g-~H~~~---~~~~~~~~~~~~l~~~l~~ 258 (263)
T 2uz0_A 227 VTYSHSAG-THEWY---YWEKQLEVFLTTLPIDFKL 258 (263)
T ss_dssp EEEEEESC-CSSHH---HHHHHHHHHHHHSSSCCCC
T ss_pred eEEEECCC-CcCHH---HHHHHHHHHHHHHHhhccc
Confidence 99999999 99763 2345678889999887753
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=185.36 Aligned_cols=193 Identities=19% Similarity=0.152 Sum_probs=148.4
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|.. .+.+|+|... .+.|+||++||+.... .........|+++||.|+.+|+ +|+
T Consensus 79 ~~g~~-~~~~~~p~~~-----~~~p~vv~~HG~~~~~---------------~~~~~~~~~la~~G~~vv~~d~---~g~ 134 (306)
T 3vis_A 79 ADGFG-GGTIYYPREN-----NTYGAIAISPGYTGTQ---------------SSIAWLGERIASHGFVVIAIDT---NTT 134 (306)
T ss_dssp CSSSC-CEEEEEESSC-----SCEEEEEEECCTTCCH---------------HHHHHHHHHHHTTTEEEEEECC---SST
T ss_pred cCCCc-ceEEEeeCCC-----CCCCEEEEeCCCcCCH---------------HHHHHHHHHHHhCCCEEEEecC---CCC
Confidence 34443 3577788752 2489999999953110 0112345678889999999665 566
Q ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHc------CCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC
Q 002209 727 GDEEANDRFVEQLVACAEAAVEEVVRR------GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800 (953)
Q Consensus 727 G~~~~~~~~~~~~~~D~~~~~~~l~~~------~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~ 800 (953)
|.+. .....|+.++++++.+. ..+|.++++|+|||+||.+++.++.++|+ ++++|+++|...
T Consensus 135 g~s~------~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~----- 202 (306)
T 3vis_A 135 LDQP------DSRARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHL----- 202 (306)
T ss_dssp TCCH------HHHHHHHHHHHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS-----
T ss_pred CCCc------chHHHHHHHHHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccC-----
Confidence 6652 23347888899999887 67888999999999999999999999987 999999887532
Q ss_pred cCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchH-HHHHHHHHHHhCCCcEEEEEeCCCCccCCC
Q 002209 801 FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTM-QSDRFFNALKGHGALCRLVILPFESHGYAA 879 (953)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~-~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 879 (953)
...+.++++|+|++||++|..+| ++ ++.++++.++..+ +++++++++++|.+..
T Consensus 203 ----------------------~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~~l~~~~-~~~~~~~~g~gH~~~~ 257 (306)
T 3vis_A 203 ----------------------NKSWRDITVPTLIIGAEYDTIAS--VTLHSKPFYNSIPSPT-DKAYLELDGASHFAPN 257 (306)
T ss_dssp ----------------------CCCCTTCCSCEEEEEETTCSSSC--TTTTHHHHHHTCCTTS-CEEEEEETTCCTTGGG
T ss_pred ----------------------ccccccCCCCEEEEecCCCcccC--cchhHHHHHHHhccCC-CceEEEECCCCccchh
Confidence 12345678999999999999998 87 6999999888765 7999999999998743
Q ss_pred cccHHHHHHHHHHHHHHhccCC
Q 002209 880 RESIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 880 ~~~~~~~~~~i~~fl~~~l~~~ 901 (953)
+....+.+.+.+||+++++..
T Consensus 258 -~~~~~~~~~i~~fl~~~l~~~ 278 (306)
T 3vis_A 258 -ITNKTIGMYSVAWLKRFVDED 278 (306)
T ss_dssp -SCCHHHHHHHHHHHHHHHSCC
T ss_pred -hchhHHHHHHHHHHHHHccCc
Confidence 334678889999999998754
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=187.15 Aligned_cols=231 Identities=19% Similarity=0.187 Sum_probs=158.3
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHc-CcEE
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-GFAI 715 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G~~V 715 (953)
...+.+++++.+| .+.+++|.|.+ ..+.|+||++||+.+.. +....+ ......|+++ ||.|
T Consensus 46 ~~~~~~~i~~~~g-~i~~~~~~p~~-----~~~~p~vv~~HGgg~~~--------g~~~~~----~~~~~~la~~~g~~v 107 (311)
T 2c7b_A 46 AETRDVHIPVSGG-SIRARVYFPKK-----AAGLPAVLYYHGGGFVF--------GSIETH----DHICRRLSRLSDSVV 107 (311)
T ss_dssp SEEEEEEEEETTE-EEEEEEEESSS-----CSSEEEEEEECCSTTTS--------CCTGGG----HHHHHHHHHHHTCEE
T ss_pred ceEEEEEecCCCC-cEEEEEEecCC-----CCCCcEEEEECCCcccC--------CChhhh----HHHHHHHHHhcCCEE
Confidence 4578889998887 89999999975 22479999999974321 111111 2345567765 9999
Q ss_pred EEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCC----cccEEE
Q 002209 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGI 788 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~a~v 788 (953)
+.+|++ |.|.+. +.....|+.++++++.+.. .+|+++++|+|||+||++++.++.++|+ .++++|
T Consensus 108 ~~~d~r---g~g~~~-----~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~v 179 (311)
T 2c7b_A 108 VSVDYR---LAPEYK-----FPTAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQV 179 (311)
T ss_dssp EEECCC---CTTTSC-----TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEE
T ss_pred EEecCC---CCCCCC-----CCccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEE
Confidence 996664 555442 2345778889999987752 3677899999999999999999987765 599999
Q ss_pred EcccCCCCCCCCc-----------CcccccchhhhhHHHH---------HhcCcccc-cCCCCCcEEEEEeCCCCCCCCc
Q 002209 789 ARSGAYNRTLTPF-----------GFQNEDRTLWEATSTY---------VEMSPFMS-ANKLKKPILLVHGEEDNNSGTL 847 (953)
Q Consensus 789 ~~~~~~d~~~~~~-----------~~~~~~~~~~~~~~~~---------~~~sp~~~-~~~i~~P~Li~~G~~D~~v~~~ 847 (953)
+++|+.+...... .+.......|- ...| ...+|+.. +..+. |+||+||+.|..+
T Consensus 180 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~l~~~~-P~lii~G~~D~~~--- 254 (311)
T 2c7b_A 180 LIYPVVNMTGVPTASLVEFGVAETTSLPIELMVWF-GRQYLKRPEEAYDFKASPLLADLGGLP-PALVVTAEYDPLR--- 254 (311)
T ss_dssp EESCCCCCSSCCCHHHHHHHHCTTCSSCHHHHHHH-HHHHCSSTTGGGSTTTCGGGSCCTTCC-CEEEEEETTCTTH---
T ss_pred EECCccCCccccccCCccHHHhccCCCCHHHHHHH-HHHhCCCCccccCcccCcccccccCCC-cceEEEcCCCCch---
Confidence 9999877311000 00000000000 0001 01233322 23333 9999999999875
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHhcc
Q 002209 848 TMQSDRFFNALKGHGALCRLVILPFESHGYAA----RESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 848 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~fl~~~l~ 899 (953)
.++..++++++..+.+++++++++++|.+.. .+....+.+.+.+||.+++.
T Consensus 255 -~~~~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (311)
T 2c7b_A 255 -DEGELYAYKMKASGSRAVAVRFAGMVHGFVSFYPFVDAGREALDLAAASIRSGLQ 309 (311)
T ss_dssp -HHHHHHHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHTC
T ss_pred -HHHHHHHHHHHHCCCCEEEEEeCCCccccccccccCHHHHHHHHHHHHHHHHHhc
Confidence 3567788999999999999999999998752 24457788999999999874
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-18 Score=189.66 Aligned_cols=238 Identities=15% Similarity=0.074 Sum_probs=161.4
Q ss_pred CCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEE
Q 002209 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (953)
Q Consensus 636 ~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (953)
.+..+.+++...+|..+.+++|.|.+. . ++.|+||++|||.+..+ ... ..........|+++||+|
T Consensus 79 ~~~~~~~~~~~~~g~~l~~~v~~p~~~--~--~~~p~vv~iHGgg~~~g--------~~~--~~~~~~~~~~la~~g~~v 144 (361)
T 1jkm_A 79 DVETSTETILGVDGNEITLHVFRPAGV--E--GVLPGLVYTHGGGMTIL--------TTD--NRVHRRWCTDLAAAGSVV 144 (361)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEETTC--C--SCEEEEEEECCSTTTSS--------CSS--SHHHHHHHHHHHHTTCEE
T ss_pred CceeeeeeeecCCCCeEEEEEEeCCCC--C--CCCeEEEEEcCCccccC--------CCc--ccchhHHHHHHHhCCCEE
Confidence 345677888888888999999999752 1 25899999999753321 111 001123456778899999
Q ss_pred EEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHh-----CCCcccEE
Q 002209 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAH-----APHLFCCG 787 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~-----~p~~~~a~ 787 (953)
+.+++++..|. . +...+...+.|+.++++|+.++. .+| +|+|+|||+||.+++.++.. .|++|+++
T Consensus 145 v~~d~r~~gg~---~-~~~~~~~~~~D~~~~~~~v~~~~~~~~~~--~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~ 218 (361)
T 1jkm_A 145 VMVDFRNAWTA---E-GHHPFPSGVEDCLAAVLWVDEHRESLGLS--GVVVQGESGGGNLAIATTLLAKRRGRLDAIDGV 218 (361)
T ss_dssp EEEECCCSEET---T-EECCTTHHHHHHHHHHHHHHHTHHHHTEE--EEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEE
T ss_pred EEEecCCCCCC---C-CCCCCCccHHHHHHHHHHHHhhHHhcCCC--eEEEEEECHHHHHHHHHHHHHHhcCCCcCcceE
Confidence 99777544322 1 11223556789999999998752 344 99999999999999999998 77789999
Q ss_pred EEcccCCCCCCC---------CcCcccccchhhh--hH----HHHH---------hcCcc----cccCCCCCcEEEEEeC
Q 002209 788 IARSGAYNRTLT---------PFGFQNEDRTLWE--AT----STYV---------EMSPF----MSANKLKKPILLVHGE 839 (953)
Q Consensus 788 v~~~~~~d~~~~---------~~~~~~~~~~~~~--~~----~~~~---------~~sp~----~~~~~i~~P~Li~~G~ 839 (953)
|+++|+.+.... ...+.......+. .. ..|. ..+|+ ..+.++. |+||+||+
T Consensus 219 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~l~-P~Lii~G~ 297 (361)
T 1jkm_A 219 YASIPYISGGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLP-PFVVAVNE 297 (361)
T ss_dssp EEESCCCCCCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCC-CEEEEEET
T ss_pred EEECCccccccccccccccccCcchhhccCcccCHHHHHHHHHHhCCCCCCCCCcccCccccChhhHcCCC-ceEEEEcC
Confidence 999998775210 0000000000000 00 0010 12333 2235565 99999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCC-C----cccH-HHHHHHHHHHHHHhc
Q 002209 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA-A----RESI-MHVLWETDRWLQKYC 898 (953)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~-~----~~~~-~~~~~~i~~fl~~~l 898 (953)
+|..+ .++.+++++++..+.+++++++++++|.+. . .+.. ..+.+.+.+||+++.
T Consensus 298 ~D~~~----~~~~~~~~~l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~~ 358 (361)
T 1jkm_A 298 LDPLR----DEGIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 358 (361)
T ss_dssp TCTTH----HHHHHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred cCcch----hhHHHHHHHHHHcCCCEEEEEeCCCccCccccccccccHHHHHHHHHHHHHHHHhh
Confidence 99875 378899999999999999999999999874 2 1333 677889999998764
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=207.77 Aligned_cols=245 Identities=19% Similarity=0.219 Sum_probs=164.4
Q ss_pred EcCCCcE--EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcC---------C--------CC-----------------
Q 002209 645 QRKDGVQ--LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKD---------A--------AG----------------- 688 (953)
Q Consensus 645 ~~~dg~~--~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~---------~--------~~----------------- 688 (953)
+..||.+ |.+.+|+|++ .+++|+||..||....... . .+
T Consensus 179 ~~~DG~~d~L~a~l~~P~~-----~~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~ 253 (763)
T 1lns_A 179 SEQRGENDLIKIQIIRPKS-----TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAK 253 (763)
T ss_dssp TTCSSSCCEEEEEEEECCC-----SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCC
T ss_pred cCCCCCeeeEEEEEEecCC-----CCcccEEEecCCcCCCCcccccccccccccccccccCccccccccccccccccccc
Confidence 3579998 9999999986 2369999988763211100 0 00
Q ss_pred ---cccCCCCCCCCc-cchHHHHHHHcCcEEEEcCCCCCCCCCChhhh-hhhHHHHHHHHHHHHHHHHHc----------
Q 002209 689 ---QVRGSPNEFPRI-GSTSVLLWLARGFAILGGPTTPIIGEGDEEAN-DRFVEQLVACAEAAVEEVVRR---------- 753 (953)
Q Consensus 689 ---~~~~~~~~~~~~-~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~-~~~~~~~~~D~~~~~~~l~~~---------- 753 (953)
+...+...|... .......|+++||+|+.+|. +|+|.+.+. ..+....++|+.++++||..+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~~D~---RG~G~S~G~~~~~~~~e~~D~~a~IdwL~~~~~~~~d~~~~ 330 (763)
T 1lns_A 254 ELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAG---VGTRSSDGFQTSGDYQQIYSMTAVIDWLNGRARAYTSRKKT 330 (763)
T ss_dssp CCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECC---TTSTTSCSCCCTTSHHHHHHHHHHHHHHTTSSCEESSTTCC
T ss_pred cccccccchhccccccccchHHHHHHCCCEEEEECC---CcCCCCCCcCCCCCHHHHHHHHHHHHHHhhccccccccccc
Confidence 000000111110 12345789999999999555 566666442 223346789999999999843
Q ss_pred -----CCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC---------CCcCccccc---------chh
Q 002209 754 -----GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL---------TPFGFQNED---------RTL 810 (953)
Q Consensus 754 -----~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~---------~~~~~~~~~---------~~~ 810 (953)
++ +..||+++|+||||++++.+|+.+|+.++|+|+.+|+.++.. ...++.... ...
T Consensus 331 ~~v~q~~-~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~~~~ 409 (763)
T 1lns_A 331 HEIKASW-ANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRN 409 (763)
T ss_dssp CEECCTT-EEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGG
T ss_pred ccccccC-CCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhcccCCchhhhHHhHHHHhhh
Confidence 32 356999999999999999999999999999999998764210 000111000 000
Q ss_pred h------------hh----------------HHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCC
Q 002209 811 W------------EA----------------TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862 (953)
Q Consensus 811 ~------------~~----------------~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g 862 (953)
+ .. .+.+...++...+++|++|+|++||..|.+|| +.++.+++++++. +
T Consensus 410 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~s~~~~l~~I~~PvLii~G~~D~~vp--~~~a~~l~~al~~-~ 486 (763)
T 1lns_A 410 LDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVT--PEQAYNFWKALPE-G 486 (763)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSC--THHHHHHHHHSCT-T
T ss_pred cCcchhhhHHHHHHHHHHHHHhhhhhccCchhHHhhccChhhHhhcCCCCEEEEEECCCCCCC--hHHHHHHHHhhcc-C
Confidence 0 00 01233456778889999999999999999998 9999999999987 6
Q ss_pred CcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccCCC
Q 002209 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 863 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (953)
.+.++++. +++|..........+.+.+.+||++||+..+
T Consensus 487 ~~~~l~i~-~~gH~~~~~~~~~~~~~~i~~Ffd~~Lkg~~ 525 (763)
T 1lns_A 487 HAKHAFLH-RGAHIYMNSWQSIDFSETINAYFVAKLLDRD 525 (763)
T ss_dssp CCEEEEEE-SCSSCCCTTBSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEe-CCcccCccccchHHHHHHHHHHHHHHhcCCC
Confidence 67777664 5689864322233467899999999998654
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=170.60 Aligned_cols=186 Identities=16% Similarity=0.103 Sum_probs=138.5
Q ss_pred CCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH--cCcEEEEcCCC----------------CCCCCCCh
Q 002209 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA--RGFAILGGPTT----------------PIIGEGDE 729 (953)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~G~~V~~~~~~----------------~~~G~G~~ 729 (953)
++.|+||++||.... ...| ......|++ +||.|+.++.. +..|+|.+
T Consensus 12 ~~~~~vv~~HG~~~~-----------~~~~----~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~ 76 (218)
T 1auo_A 12 PADACVIWLHGLGAD-----------RYDF----MPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPA 76 (218)
T ss_dssp CCSEEEEEECCTTCC-----------TTTT----HHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSS
T ss_pred CCCcEEEEEecCCCC-----------hhhH----HHHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCcc
Confidence 358999999996311 1111 234556777 99999997653 33455543
Q ss_pred hh-hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH-hCCCcccEEEEcccCCCCCCCCcCccccc
Q 002209 730 EA-NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA-HAPHLFCCGIARSGAYNRTLTPFGFQNED 807 (953)
Q Consensus 730 ~~-~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~~~~d~~~~~~~~~~~~ 807 (953)
.. .........+|+..+++++.+ ..++.++++++|||+||.+++.++. ++|++++++|+++|...... +..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~----~~~-- 149 (218)
T 1auo_A 77 RSISLEELEVSAKMVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFG----DEL-- 149 (218)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCC----TTC--
T ss_pred cccchHHHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCCch----hhh--
Confidence 22 122345667788888888776 4477889999999999999999999 99999999999999765300 000
Q ss_pred chhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHH
Q 002209 808 RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVL 887 (953)
Q Consensus 808 ~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~ 887 (953)
......+++|+|++||++|..+| ++.++++++.++..+.++++++++ ++|.+. .+..
T Consensus 150 ---------------~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~~-----~~~~ 206 (218)
T 1auo_A 150 ---------------ELSASQQRIPALCLHGQYDDVVQ--NAMGRSAFEHLKSRGVTVTWQEYP-MGHEVL-----PQEI 206 (218)
T ss_dssp ---------------CCCHHHHTCCEEEEEETTCSSSC--HHHHHHHHHHHHTTTCCEEEEEES-CSSSCC-----HHHH
T ss_pred ---------------hhhhcccCCCEEEEEeCCCceec--HHHHHHHHHHHHhCCCceEEEEec-CCCccC-----HHHH
Confidence 00113457899999999999998 999999999999988899999999 999874 2346
Q ss_pred HHHHHHHHHhc
Q 002209 888 WETDRWLQKYC 898 (953)
Q Consensus 888 ~~i~~fl~~~l 898 (953)
+.+.+||.+++
T Consensus 207 ~~~~~~l~~~l 217 (218)
T 1auo_A 207 HDIGAWLAARL 217 (218)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 78899999876
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-17 Score=171.02 Aligned_cols=215 Identities=17% Similarity=0.118 Sum_probs=153.4
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC
Q 002209 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (953)
Q Consensus 643 ~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (953)
.+...+|. ..++|.|.+ +.|+||++||..... ..| ......|+++||.|+.+++
T Consensus 6 ~~~~~~g~--~~~~~~~~~-------~~~~vv~~hG~~~~~-----------~~~----~~~~~~l~~~G~~v~~~d~-- 59 (238)
T 1ufo_A 6 ERLTLAGL--SVLARIPEA-------PKALLLALHGLQGSK-----------EHI----LALLPGYAERGFLLLAFDA-- 59 (238)
T ss_dssp EEEEETTE--EEEEEEESS-------CCEEEEEECCTTCCH-----------HHH----HHTSTTTGGGTEEEEECCC--
T ss_pred cccccCCE--EEEEEecCC-------CccEEEEECCCcccc-----------hHH----HHHHHHHHhCCCEEEEecC--
Confidence 33444664 445677754 379999999963110 001 1123356778999999555
Q ss_pred CCCCCChhhhh-------------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEE
Q 002209 723 IIGEGDEEAND-------------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (953)
Q Consensus 723 ~~G~G~~~~~~-------------~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (953)
+|+|.+.... ......++|+.++++++.+++. ++++++|||+||.+++.++.++|+.++++++
T Consensus 60 -~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~ 135 (238)
T 1ufo_A 60 -PRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAF 135 (238)
T ss_dssp -TTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEE
T ss_pred -CCCccCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEE
Confidence 5566553211 1245678899999999987653 6999999999999999999999998998888
Q ss_pred cccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCC-CCcEEEEEeCCCCCCCCchHHHHHHHHHHH-hCCC-cEE
Q 002209 790 RSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALK-GHGA-LCR 866 (953)
Q Consensus 790 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~-~~g~-~~~ 866 (953)
.++..........+. .+ .....+...++...+.++ ++|+|++||++|..+| .+.+.++++.++ ..+. +++
T Consensus 136 ~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 208 (238)
T 1ufo_A 136 IGSGFPMKLPQGQVV----ED-PGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVP--LARMEKTLEALRPHYPEGRLA 208 (238)
T ss_dssp SCCSSCCCCCTTCCC----CC-HHHHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTT--HHHHHHHHHHHGGGCTTCCEE
T ss_pred ecCCccchhhhhhcc----CC-cccchhhcCChhhhhhhccCCcEEEEECCCCCccC--cHHHHHHHHHHhhcCCCCceE
Confidence 876543222111110 00 113445566777778888 8999999999999998 999999999999 7777 899
Q ss_pred EEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 867 LVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 867 ~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
++++++++|.+. .+..+.+.+||.++++
T Consensus 209 ~~~~~~~~H~~~-----~~~~~~~~~~l~~~l~ 236 (238)
T 1ufo_A 209 RFVEEGAGHTLT-----PLMARVGLAFLEHWLE 236 (238)
T ss_dssp EEEETTCCSSCC-----HHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcccH-----HHHHHHHHHHHHHHHh
Confidence 999999999874 2456788899998875
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.4e-17 Score=175.19 Aligned_cols=228 Identities=18% Similarity=0.174 Sum_probs=157.7
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC
Q 002209 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (953)
Q Consensus 643 ~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (953)
.+...+|.++.++++.|.+ .+.|+||++||..... .. .......|+++||.|+.+|.
T Consensus 21 ~~~~~~g~~l~~~~~~~~~------~~~~~vv~~hG~~~~~-----------~~----~~~~~~~l~~~g~~v~~~d~-- 77 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPTG------TPKALIFVSHGAGEHS-----------GR----YEELARMLMGLDLLVFAHDH-- 77 (303)
T ss_dssp EEECTTSCEEEEEEECCSS------CCSEEEEEECCTTCCG-----------GG----GHHHHHHHHHTTEEEEEECC--
T ss_pred eEecCCCeEEEEEEeccCC------CCCeEEEEECCCCchh-----------hH----HHHHHHHHHhCCCcEEEeCC--
Confidence 6778899999999998863 2379999999963211 11 12456678888999999554
Q ss_pred CCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC-
Q 002209 723 IIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL- 798 (953)
Q Consensus 723 ~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~- 798 (953)
+|+|.+.... ......++|+.++++++.... +..++.++|||+||.+++.++.++|++++++|+++|......
T Consensus 78 -~G~G~s~~~~~~~~~~~~~~~d~~~~l~~l~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~ 154 (303)
T 3pe6_A 78 -VGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDY--PGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPE 154 (303)
T ss_dssp -TTSTTSCSSTTCCSSTHHHHHHHHHHHHHHHHHS--TTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHH
T ss_pred -CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcc--CCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchh
Confidence 6777764321 235677899999999998763 356899999999999999999999999999999998754210
Q ss_pred ----------------CC-cCccccc-chh---hhhHHHHHh---------------------cCcccccCCCCCcEEEE
Q 002209 799 ----------------TP-FGFQNED-RTL---WEATSTYVE---------------------MSPFMSANKLKKPILLV 836 (953)
Q Consensus 799 ----------------~~-~~~~~~~-~~~---~~~~~~~~~---------------------~sp~~~~~~i~~P~Li~ 836 (953)
.. ....... ... ......+.. ......+.++++|+|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i 234 (303)
T 3pe6_A 155 SATTFKVLAAKVLNSVLPNLSSGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLL 234 (303)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCCCCCCGGGTCSCHHHHHHHHTCTTSCCSCCCHHHHHHHHHHHHHHHHHGGGCCSCEEEE
T ss_pred ccHHHHHHHHHHHHHhcccccCCccchhhhhcchhHHHHhccCccccccchhhhhHHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 00 0000000 000 000000000 01123467789999999
Q ss_pred EeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc--ccHHHHHHHHHHHHHHhccC
Q 002209 837 HGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR--ESIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 837 ~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~--~~~~~~~~~i~~fl~~~l~~ 900 (953)
+|++|..++ .+.+.++++.+.. ..+++++++++||.+... +....+.+.+++||++++..
T Consensus 235 ~g~~D~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~p~~~~~~~~~~~~~l~~~~~~ 296 (303)
T 3pe6_A 235 QGSADRLCD--SKGAYLLMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTAT 296 (303)
T ss_dssp EETTCSSBC--HHHHHHHHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHTTC-
T ss_pred eeCCCCCCC--hHHHHHHHHhccc--CCceEEEeCCCccceeccchHHHHHHHHHHHHHHhccCCC
Confidence 999999998 8888888887753 257999999999987432 22456778899999988743
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=172.00 Aligned_cols=198 Identities=13% Similarity=0.093 Sum_probs=143.1
Q ss_pred EEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCC--------------
Q 002209 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT-------------- 721 (953)
Q Consensus 656 l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~-------------- 721 (953)
++.|+. +.+.|+||++||..... ..| ......|+++||.|+.++..
T Consensus 14 ~~~p~~-----~~~~~~vv~lHG~~~~~-----------~~~----~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~ 73 (232)
T 1fj2_A 14 AIVPAA-----RKATAAVIFLHGLGDTG-----------HGW----AEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPS 73 (232)
T ss_dssp EEECCS-----SCCSEEEEEECCSSSCH-----------HHH----HHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEEC
T ss_pred cccCCC-----CCCCceEEEEecCCCcc-----------chH----HHHHHHHhcCCcEEEecCCCcccccccccccccc
Confidence 456654 23589999999963110 001 12233445579999996432
Q ss_pred --CCCCCCChh-hhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC
Q 002209 722 --PIIGEGDEE-ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (953)
Q Consensus 722 --~~~G~G~~~-~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~ 798 (953)
+..|+.... .........++|+.++++++.+ ..+|+++++|+|||+||.+++.++.++|++++++|+++|..+...
T Consensus 74 w~d~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~ 152 (232)
T 1fj2_A 74 WFDIIGLSPDSQEDESGIKQAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRA 152 (232)
T ss_dssp SSCBCCCSTTCCBCHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGG
T ss_pred ccccccCCcccccccHHHHHHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCc
Confidence 334441111 1223356778888888888877 557788999999999999999999999999999999998754211
Q ss_pred CCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc--EEEEEeCCCCcc
Q 002209 799 TPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL--CRLVILPFESHG 876 (953)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~--~~~~~~~~~~H~ 876 (953)
. + ......+.++++|+|++||++|..++ ++.+.++++.+++.+.+ ++++++++++|.
T Consensus 153 ~---~----------------~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~H~ 211 (232)
T 1fj2_A 153 S---F----------------PQGPIGGANRDISILQCHGDCDPLVP--LMFGSLTVEKLKTLVNPANVTFKTYEGMMHS 211 (232)
T ss_dssp G---S----------------CSSCCCSTTTTCCEEEEEETTCSSSC--HHHHHHHHHHHHHHSCGGGEEEEEETTCCSS
T ss_pred c---c----------------cccccccccCCCCEEEEecCCCccCC--HHHHHHHHHHHHHhCCCCceEEEEeCCCCcc
Confidence 0 0 00112356678999999999999998 99999999999988755 999999999998
Q ss_pred CCCcccHHHHHHHHHHHHHHhccC
Q 002209 877 YAARESIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 877 ~~~~~~~~~~~~~i~~fl~~~l~~ 900 (953)
+. .+..+.+.+||++++..
T Consensus 212 ~~-----~~~~~~i~~~l~~~l~~ 230 (232)
T 1fj2_A 212 SC-----QQEMMDVKQFIDKLLPP 230 (232)
T ss_dssp CC-----HHHHHHHHHHHHHHSCC
T ss_pred cC-----HHHHHHHHHHHHHhcCC
Confidence 73 33458899999999854
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.4e-18 Score=189.56 Aligned_cols=233 Identities=17% Similarity=0.172 Sum_probs=160.5
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
...+.++++. +|..+.++++.|. ..+.|+||++||+... ...+.......++++||.|+
T Consensus 133 ~~~~~~~i~~-~~~~l~~~~~~~~------~~~~p~vv~~HG~~~~--------------~~~~~~~~~~~~~~~g~~vi 191 (405)
T 3fnb_A 133 IPLKSIEVPF-EGELLPGYAIISE------DKAQDTLIVVGGGDTS--------------REDLFYMLGYSGWEHDYNVL 191 (405)
T ss_dssp CCCEEEEEEE-TTEEEEEEEECCS------SSCCCEEEEECCSSCC--------------HHHHHHHTHHHHHHTTCEEE
T ss_pred CCcEEEEEeE-CCeEEEEEEEcCC------CCCCCEEEEECCCCCC--------------HHHHHHHHHHHHHhCCcEEE
Confidence 3467777876 6789999988432 2236999999995211 00001111224568999999
Q ss_pred EcCCCCCCCCCChhhhh-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 717 GGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
.+|+ +|+|.+.... .+......|+.+++++|..+. ++++|+|||+||++++.++.++| +++++|+.+|+.+
T Consensus 192 ~~D~---~G~G~s~~~~~~~~~~~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~ 263 (405)
T 3fnb_A 192 MVDL---PGQGKNPNQGLHFEVDARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYD 263 (405)
T ss_dssp EECC---TTSTTGGGGTCCCCSCTHHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSC
T ss_pred EEcC---CCCcCCCCCCCCCCccHHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCC
Confidence 9554 6777774321 122345788889999986653 68999999999999999999998 8999999999876
Q ss_pred CCCC-----------CcCccc---------ccchhh---------------hhHHHHHhcCcccccCCCCCcEEEEEeCC
Q 002209 796 RTLT-----------PFGFQN---------EDRTLW---------------EATSTYVEMSPFMSANKLKKPILLVHGEE 840 (953)
Q Consensus 796 ~~~~-----------~~~~~~---------~~~~~~---------------~~~~~~~~~sp~~~~~~i~~P~Li~~G~~ 840 (953)
.... +..... .....| .....+....+...+.++++|+||+||++
T Consensus 264 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~ 343 (405)
T 3fnb_A 264 VAEVFRISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAG 343 (405)
T ss_dssp HHHHHHHHCC------------------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGGCCSCEEEEEETT
T ss_pred HHHHHHHhhhhhhhCcHHHHHHHHHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhhCCCCEEEEecCC
Confidence 2100 000000 000000 00122333344444788999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC--CCcccHHHHHHHHHHHHHHhccC
Q 002209 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY--AARESIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~--~~~~~~~~~~~~i~~fl~~~l~~ 900 (953)
|..|| +.++.++++.++..+.++++++++++.|.. ...+....+.+.+.+||+++++.
T Consensus 344 D~~v~--~~~~~~l~~~l~~~~~~~~l~~~~~~~h~gh~~~~~~~~~~~~~i~~fL~~~l~~ 403 (405)
T 3fnb_A 344 EDSEL--MRQSQVLYDNFKQRGIDVTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIFKK 403 (405)
T ss_dssp SCHHH--HHHHHHHHHHHHHTTCCEEEEEECTTTTCCSGGGGGGHHHHHHHHHHHHHHHHC-
T ss_pred CcCCC--hHHHHHHHHHhccCCCCceEEEEcCCccchhccccchHHHHHHHHHHHHHHHhCc
Confidence 99988 999999999999988899999997665542 24566788899999999999864
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-17 Score=174.48 Aligned_cols=226 Identities=13% Similarity=0.081 Sum_probs=152.6
Q ss_pred eEEEEE-EcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 639 KELIKY-QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 639 ~~~~~~-~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
.+.+++ .+.+|.++.+..+.+.+ .+.|+||++||+.... ..+ ........++++||.|+.
T Consensus 11 ~~~~~~~~~~~g~~l~~~~~~~~~------~~~~~vv~~HG~~~~~-----------~~~--~~~~~~~~l~~~g~~v~~ 71 (270)
T 3llc_A 11 THAITVGQGSDARSIAALVRAPAQ------DERPTCIWLGGYRSDM-----------TGT--KALEMDDLAASLGVGAIR 71 (270)
T ss_dssp EEEEEESSGGGCEEEEEEEECCSS------TTSCEEEEECCTTCCT-----------TSH--HHHHHHHHHHHHTCEEEE
T ss_pred cceEEEeeccCcceEEEEeccCCC------CCCCeEEEECCCcccc-----------ccc--hHHHHHHHHHhCCCcEEE
Confidence 344555 55689999888776542 1268999999963110 011 011234556789999999
Q ss_pred cCCCCCCCCCChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---CC---CcccEEEE
Q 002209 718 GPTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH---AP---HLFCCGIA 789 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~---~p---~~~~a~v~ 789 (953)
+|+ +|+|.+... .......++|+.++++++. .++++|+|||+||.+++.++.+ +| ++++++|+
T Consensus 72 ~d~---~G~G~s~~~~~~~~~~~~~~d~~~~~~~l~------~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~il 142 (270)
T 3llc_A 72 FDY---SGHGASGGAFRDGTISRWLEEALAVLDHFK------PEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVL 142 (270)
T ss_dssp ECC---TTSTTCCSCGGGCCHHHHHHHHHHHHHHHC------CSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEEE
T ss_pred ecc---ccCCCCCCccccccHHHHHHHHHHHHHHhc------cCCeEEEEeChHHHHHHHHHHHHHhccccccccceeEE
Confidence 555 566666432 2345677888888888763 4689999999999999999999 99 89999999
Q ss_pred cccCCCCCCCC-c-C--------------------cccc-cchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCC
Q 002209 790 RSGAYNRTLTP-F-G--------------------FQNE-DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGT 846 (953)
Q Consensus 790 ~~~~~d~~~~~-~-~--------------------~~~~-~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~ 846 (953)
++|..+..... + . +... ..........+........+.++++|+|++||++|..||
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~v~- 221 (270)
T 3llc_A 143 IAPAPDFTSDLIEPLLGDRERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVP- 221 (270)
T ss_dssp ESCCTTHHHHTTGGGCCHHHHHHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCCCCSCEEEEEETTCSSSC-
T ss_pred ecCcccchhhhhhhhhhhhhhhhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhcCCCCEEEEecCCCCCCC-
Confidence 99875421100 0 0 0000 000011122333344456678889999999999999998
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
.+.+.++++.+.. .+++++++++++|.+...+....+.+.+.+||++
T Consensus 222 -~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~~ 268 (270)
T 3llc_A 222 -YQHALKLVEHLPA--DDVVLTLVRDGDHRLSRPQDIDRMRNAIRAMIEP 268 (270)
T ss_dssp -HHHHHHHHHTSCS--SSEEEEEETTCCSSCCSHHHHHHHHHHHHHHHC-
T ss_pred -HHHHHHHHHhcCC--CCeeEEEeCCCcccccccccHHHHHHHHHHHhcC
Confidence 8888888877654 3589999999999876555566666677777654
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-17 Score=165.11 Aligned_cols=180 Identities=14% Similarity=0.075 Sum_probs=132.8
Q ss_pred CccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC----------CCCCCChhh---hhhh
Q 002209 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP----------IIGEGDEEA---NDRF 735 (953)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~----------~~G~G~~~~---~~~~ 735 (953)
+.| ||++||.... ...| ......|+ .||.|+.++... ..|+|.... ....
T Consensus 16 ~~p-vv~lHG~g~~-----------~~~~----~~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~ 78 (209)
T 3og9_A 16 LAP-LLLLHSTGGD-----------EHQL----VEIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLES 78 (209)
T ss_dssp SCC-EEEECCTTCC-----------TTTT----HHHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHH
T ss_pred CCC-EEEEeCCCCC-----------HHHH----HHHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHH
Confidence 478 9999995311 1111 12334444 899999977421 233333211 1223
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHH
Q 002209 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATS 815 (953)
Q Consensus 736 ~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~ 815 (953)
....+.++.+.++.+.+...+|+++++|+||||||.+++.++.++|++++++|+++|......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~----------------- 141 (209)
T 3og9_A 79 LDEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDF----------------- 141 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCcc-----------------
Confidence 456677777888888777668889999999999999999999999999999999998654211
Q ss_pred HHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 816 TYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 816 ~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
.......++|+|++||++|.+|| +++++++++.++..+.++++++++ ++|.+. ....+.+.+||+
T Consensus 142 -------~~~~~~~~~p~li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~-~gH~~~-----~~~~~~~~~~l~ 206 (209)
T 3og9_A 142 -------EQTVQLDDKHVFLSYAPNDMIVP--QKNFGDLKGDLEDSGCQLEIYESS-LGHQLT-----QEEVLAAKKWLT 206 (209)
T ss_dssp -------CCCCCCTTCEEEEEECTTCSSSC--HHHHHHHHHHHHHTTCEEEEEECS-STTSCC-----HHHHHHHHHHHH
T ss_pred -------cccccccCCCEEEEcCCCCCccC--HHHHHHHHHHHHHcCCceEEEEcC-CCCcCC-----HHHHHHHHHHHH
Confidence 11123467899999999999999 999999999999999999999998 699884 344678889998
Q ss_pred Hh
Q 002209 896 KY 897 (953)
Q Consensus 896 ~~ 897 (953)
+.
T Consensus 207 ~~ 208 (209)
T 3og9_A 207 ET 208 (209)
T ss_dssp HH
T ss_pred hh
Confidence 64
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=169.44 Aligned_cols=184 Identities=13% Similarity=0.071 Sum_probs=124.1
Q ss_pred CccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhh-----hhhhHHHHHHHH
Q 002209 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA-----NDRFVEQLVACA 743 (953)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~-----~~~~~~~~~~D~ 743 (953)
..++||++||.... ...+. ..+..|...||.|++++..+..+++.... ...........+
T Consensus 21 a~~~Vv~lHG~G~~-----------~~~~~----~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~~~~~~~~~~~~~i 85 (210)
T 4h0c_A 21 AKKAVVMLHGRGGT-----------AADII----SLQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQQNQPALDSALALV 85 (210)
T ss_dssp CSEEEEEECCTTCC-----------HHHHH----GGGGTSSCTTEEEEEECCGGGCSSSSCTTSCGGGGTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCC-----------HHHHH----HHHHHhCCCCeEEEeecCCCCCccccccCCCcccchHHHHHHHHHH
Confidence 36899999993110 00010 11233455799999988755443332211 112223333444
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcc
Q 002209 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823 (953)
Q Consensus 744 ~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 823 (953)
...++.+.+. .+|++||+|+|+|+||++++.++.++|++|+++|+++|........ .. ..
T Consensus 86 ~~~~~~~~~~-~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~~~~---~~-------------~~--- 145 (210)
T 4h0c_A 86 GEVVAEIEAQ-GIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQELA---IG-------------NY--- 145 (210)
T ss_dssp HHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSSSCC---GG-------------GC---
T ss_pred HHHHHHHHHh-CCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCChhhh---hh-------------hh---
Confidence 4444444444 5899999999999999999999999999999999998753211000 00 00
Q ss_pred cccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 824 ~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
.....++|+|++||++|.+|| ++.++++++.|++.|.++++++||+++|.+.. +.++.+.+||.
T Consensus 146 -~~~~~~~Pvl~~hG~~D~~vp--~~~~~~~~~~L~~~g~~v~~~~ypg~gH~i~~-----~el~~i~~wL~ 209 (210)
T 4h0c_A 146 -KGDFKQTPVFISTGNPDPHVP--VSRVQESVTILEDMNAAVSQVVYPGRPHTISG-----DEIQLVNNTIL 209 (210)
T ss_dssp -CBCCTTCEEEEEEEESCTTSC--HHHHHHHHHHHHHTTCEEEEEEEETCCSSCCH-----HHHHHHHHTTT
T ss_pred -hhhccCCceEEEecCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCCcCH-----HHHHHHHHHHc
Confidence 011235799999999999999 99999999999999999999999999999852 23455666654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-16 Score=195.18 Aligned_cols=330 Identities=11% Similarity=0.034 Sum_probs=197.4
Q ss_pred hHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccC-CCCCCce
Q 002209 101 EIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP-DGKLGQE 179 (953)
Q Consensus 101 ~~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~-~g~~~~~ 179 (953)
++..++.....+. .+|||++++|...+ .+... ..||+.+... ++ +..
T Consensus 101 ~~~~~~~~~~~~~--p~pdG~~~~~~~~~----------------------~~~~~------~~l~~~~~~~~~~--~~~ 148 (741)
T 1yr2_A 101 RMKALIDYERFGL--PQRRGASVFYSWNS----------------------GLMNQ------SQLLVRPADAPVG--TKG 148 (741)
T ss_dssp HHHHHSCCCEECC--CEEETTEEEEEEEC----------------------SSCSS------CEEEEEETTSCTT--CCC
T ss_pred HHHHhhcccccCC--CEEECCEEEEEEEc----------------------CCCeE------EEEEEEcCCccCC--CCC
Confidence 3444444433334 46999999999875 11112 2678877531 02 333
Q ss_pred eeeec---CCCCC--cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecC
Q 002209 180 IEIQG---FPDGA--KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN 254 (953)
Q Consensus 180 ~~l~~---~~~~~--~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD 254 (953)
+.|.. ++.+. .+..++|||||++|||..+.. +++...||++|+++|+..+.+.... . +..++||||
T Consensus 149 ~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~----G~e~~~i~v~dl~tg~~~~~~~~~~-~----~~~~~wspD 219 (741)
T 1yr2_A 149 RVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDG----GSDWRTVKFVGVADGKPLADELKWV-K----FSGLAWLGN 219 (741)
T ss_dssp EEEECGGGCC----EEEEEEEECTTSSEEEEEEEET----TCSEEEEEEEETTTCCEEEEEEEEE-E----SCCCEESTT
T ss_pred EEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCC----CCceEEEEEEECCCCCCCCccCCCc-e----eccEEEECC
Confidence 44321 22222 577899999999999988643 4445789999999998765422111 1 357999999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc--eeEeCCC
Q 002209 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGPP 331 (953)
Q Consensus 255 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~--~~~l~~~ 331 (953)
+.|+|+....... +... ... ....+||++++ ++. .+.+...
T Consensus 220 -~~l~~~~~~~~~~---------~~~~------------------~~~--------~~~~~v~~~~lgt~~~~~~lv~~~ 263 (741)
T 1yr2_A 220 -DALLYSRFAEPKE---------GQAF------------------QAL--------NYNQTVWLHRLGTPQSADQPVFAT 263 (741)
T ss_dssp -SEEEEEECCCC-----------------------------------C--------CCCCEEEEEETTSCGGGCEEEECC
T ss_pred -CEEEEEEecCccc---------cccc------------------ccC--------CCCCEEEEEECCCCchhCEEEecc
Confidence 9999984322100 0000 000 02357889998 664 2344332
Q ss_pred ----CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc--e-EEEeccCCCcccCCccccccccCccce
Q 002209 332 ----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--F-VRELCDLPLAEDIPIAFNSVRKGMRSI 404 (953)
Q Consensus 332 ----~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~--~-~~~l~~~~~~~~~p~~~~~~~~~~~~~ 404 (953)
..+.++.|||||++|++.+.+.. ....+|+++|++++ + .+.|..... ....+
T Consensus 264 ~~~~~~~~~~~~SpDG~~l~~~~~~~~--------~~~~~l~~~d~~~~~~~~~~~l~~~~~-------------~~~~~ 322 (741)
T 1yr2_A 264 PELPKRGHGASVSSDGRWVVITSSEGT--------DPVNTVHVARVTNGKIGPVTALIPDLK-------------AQWDF 322 (741)
T ss_dssp TTCTTCEEEEEECTTSCEEEEEEECTT--------CSCCEEEEEEEETTEECCCEEEECSSS-------------SCEEE
T ss_pred CCCCeEEEEEEECCCCCEEEEEEEccC--------CCcceEEEEECCCCCCcccEEecCCCC-------------ceEEE
Confidence 24678999999999999985431 12348999999876 4 566654321 11223
Q ss_pred eeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCC--CCceEEeec-ccccCCeeeccCCceEEEEEecccCce
Q 002209 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG--EGPEILHKL-DLRYGGISWCDDSLALVYESWYKTRRT 481 (953)
Q Consensus 405 ~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g--~~~~~l~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~ 481 (953)
|+|||+.|+|..+.. .....|+++++ ++ ++.+.+... ...+..+.|+ +..|++....+. ..
T Consensus 323 -~~~dg~~l~~~s~~~---------~~~~~l~~~d~---~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg-~~ 386 (741)
T 1yr2_A 323 -VDGVGDQLWFVSGDG---------APLKKIVRVDL---SGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDA-KS 386 (741)
T ss_dssp -EEEETTEEEEEECTT---------CTTCEEEEEEC---SSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETT-EE
T ss_pred -EeccCCEEEEEECCC---------CCCCEEEEEeC---CCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECC-EE
Confidence 569999988884321 23567999996 43 234455433 2233445665 556766655443 36
Q ss_pred EEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCC
Q 002209 482 RTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINT 561 (953)
Q Consensus 482 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~ 561 (953)
+||+++++++ ....+.-.....+.. ++++|||+.|+|...... ....||+||+++
T Consensus 387 ~l~~~~~~g~--~~~~l~~~~~~~v~~------~~~s~d~~~l~~~~ss~~-----------------~P~~i~~~d~~t 441 (741)
T 1yr2_A 387 QVLAFDLDGK--PAGAVSLPGIGSASG------LSGRPGDRHAYLSFSSFT-----------------QPATVLALDPAT 441 (741)
T ss_dssp EEEEEETTSC--EEEECBCSSSCEEEE------EECCBTCSCEEEEEEETT-----------------EEEEEEEEETTT
T ss_pred EEEEEeCCCC--ceeeccCCCCeEEEE------eecCCCCCEEEEEEcCCC-----------------CCCEEEEEECCC
Confidence 8999998653 233333111222222 678999998888864321 134599999999
Q ss_pred CceEEEec
Q 002209 562 GSKERIWE 569 (953)
Q Consensus 562 ~~~~~l~~ 569 (953)
++.+.+..
T Consensus 442 g~~~~l~~ 449 (741)
T 1yr2_A 442 AKTTPWEP 449 (741)
T ss_dssp TEEEECSC
T ss_pred CcEEEEec
Confidence 98766654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-16 Score=189.01 Aligned_cols=114 Identities=6% Similarity=0.083 Sum_probs=66.9
Q ss_pred cCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEe-ecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCc
Q 002209 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL-FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGT 536 (953)
Q Consensus 458 ~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~ 536 (953)
+..++|||||+.|+..+.++. .+||.++ ++ ....+ .......+.. ++|||||++|+....+.
T Consensus 451 v~~va~spdg~~lasgs~D~~--v~lwd~~--~~--~~~~~~~~~h~~~v~~------v~fspdg~~las~s~d~----- 513 (611)
T 1nr0_A 451 SSCVALSNDKQFVAVGGQDSK--VHVYKLS--GA--SVSEVKTIVHPAEITS------VAFSNNGAFLVATDQSR----- 513 (611)
T ss_dssp EEEEEECTTSCEEEEEETTSE--EEEEEEE--TT--EEEEEEEEECSSCEEE------EEECTTSSEEEEEETTS-----
T ss_pred ceEEEEeCCCCEEEEeCCCCe--EEEEEcc--CC--ceeeeeccCCCCceEE------EEECCCCCEEEEEcCCC-----
Confidence 346889999999988875542 3555554 32 11111 1222222333 88999999998776322
Q ss_pred EEEEecCCCCCCCCCCeEEEEECCC-CceEEE--ec-cCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEE
Q 002209 537 YILLNGNGATPEGNIPFLDLFDINT-GSKERI--WE-SDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYY 612 (953)
Q Consensus 537 ~~~~~~~~~~~~~~~~~L~~~d~~~-~~~~~l--~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~ 612 (953)
.+++||+.+ ++.... +. .... +. ..+|||||+.|+..... ..+.
T Consensus 514 ----------------~v~~w~~~~~~~~~~~~~~~~H~~~-----V~-------~v~fspdg~~lasgs~D----~~v~ 561 (611)
T 1nr0_A 514 ----------------KVIPYSVANNFELAHTNSWTFHTAK-----VA-------CVSWSPDNVRLATGSLD----NSVI 561 (611)
T ss_dssp ----------------CEEEEEGGGTTEESCCCCCCCCSSC-----EE-------EEEECTTSSEEEEEETT----SCEE
T ss_pred ----------------CEEEEEcCCCCceeeeeeeeecccc-----ee-------EEEECCCCCEEEEEECC----CcEE
Confidence 388999876 433221 11 1111 11 24799999977754332 3488
Q ss_pred EEECCCCC
Q 002209 613 IQSWPDKK 620 (953)
Q Consensus 613 ~~~~~~g~ 620 (953)
+|++.+++
T Consensus 562 lW~~~~~~ 569 (611)
T 1nr0_A 562 VWNMNKPS 569 (611)
T ss_dssp EEETTCTT
T ss_pred EEECCCcc
Confidence 89987765
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-17 Score=175.71 Aligned_cols=198 Identities=16% Similarity=0.073 Sum_probs=139.2
Q ss_pred EEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH--cCcEEEEcCC---CCCCCCC
Q 002209 653 SATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA--RGFAILGGPT---TPIIGEG 727 (953)
Q Consensus 653 ~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~G~~V~~~~~---~~~~G~G 727 (953)
..+...|+. ++ ++.|+||++||.... .+.+. .....|+. .++.++.++. ....|.|
T Consensus 53 l~y~~~p~~--~~--~~~plVI~LHG~G~~-----------~~~~~----~~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G 113 (285)
T 4fhz_A 53 LTFGRRGAA--PG--EATSLVVFLHGYGAD-----------GADLL----GLAEPLAPHLPGTAFVAPDAPEPCRANGFG 113 (285)
T ss_dssp CCEEEEESC--TT--CCSEEEEEECCTTBC-----------HHHHH----TTHHHHGGGSTTEEEEEECCSEECTTSSSC
T ss_pred ceeecCCCC--CC--CCCcEEEEEcCCCCC-----------HHHHH----HHHHHHHHhCCCeEEEecCCCcccccCCCc
Confidence 334555543 22 358999999994110 00111 12344554 3788887653 1223444
Q ss_pred Chhhh------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 728 DEEAN------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 728 ~~~~~------------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
..+.. .........++.+.++.+.++..+|++||+|+|+|+||++++.++.++|+.|+++|+++|...
T Consensus 114 ~~Wfd~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~ 193 (285)
T 4fhz_A 114 FQWFPIPWLDGSSETAAAEGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLL 193 (285)
T ss_dssp EESSCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCS
T ss_pred ccccccccccCcccchhhHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCcc
Confidence 43211 111233456677777777777779999999999999999999999999999999999887421
Q ss_pred CCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCc
Q 002209 796 RTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875 (953)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H 875 (953)
. .+.+.. ..+.++|+|++||++|.+|| ++.+++++++|++.|.++++++|+++||
T Consensus 194 ~-----------------~~~~~~------~~~~~~Pvl~~hG~~D~~Vp--~~~~~~~~~~L~~~g~~~~~~~y~g~gH 248 (285)
T 4fhz_A 194 A-----------------PERLAE------EARSKPPVLLVHGDADPVVP--FADMSLAGEALAEAGFTTYGHVMKGTGH 248 (285)
T ss_dssp C-----------------HHHHHH------HCCCCCCEEEEEETTCSSSC--THHHHHHHHHHHHTTCCEEEEEETTCCS
T ss_pred C-----------------chhhhh------hhhhcCcccceeeCCCCCcC--HHHHHHHHHHHHHCCCCEEEEEECCCCC
Confidence 0 011111 12346899999999999999 9999999999999999999999999999
Q ss_pred cCCCcccHHHHHHHHHHHHHHhcc
Q 002209 876 GYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 876 ~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
.+. .+.++.+.+||+++|-
T Consensus 249 ~i~-----~~~l~~~~~fL~~~Lp 267 (285)
T 4fhz_A 249 GIA-----PDGLSVALAFLKERLP 267 (285)
T ss_dssp SCC-----HHHHHHHHHHHHHHCC
T ss_pred CCC-----HHHHHHHHHHHHHHCc
Confidence 974 3446789999999984
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-17 Score=182.82 Aligned_cols=241 Identities=13% Similarity=0.089 Sum_probs=159.6
Q ss_pred CCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCc--cchHHHHHHHcCc
Q 002209 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI--GSTSVLLWLARGF 713 (953)
Q Consensus 636 ~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~la~~G~ 713 (953)
.++.+..++...||..+.++.+.|........++.|+||++||.+.... .|... ....+..|+++||
T Consensus 24 ~~~~~~~~~~~~dG~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~~~~~-----------~~~~~~~~~~~a~~l~~~G~ 92 (377)
T 1k8q_A 24 GYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASAT-----------NWISNLPNNSLAFILADAGY 92 (377)
T ss_dssp TCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGG-----------GGSSSCTTTCHHHHHHHTTC
T ss_pred CCCceEEEeEcCCCCEEEEEEecCCCCCccccCCCCeEEEECCCCCchh-----------hhhcCCCcccHHHHHHHCCC
Confidence 3567888899999999999888765311001124789999999643221 11111 1234557889999
Q ss_pred EEEEcCCCCCCCCCChhhh-----------hhhHHHHHH-HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC
Q 002209 714 AILGGPTTPIIGEGDEEAN-----------DRFVEQLVA-CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP 781 (953)
Q Consensus 714 ~V~~~~~~~~~G~G~~~~~-----------~~~~~~~~~-D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p 781 (953)
.|+++ +.+|+|.+... ......... |+.++++++.+.. +.+++.|+||||||.+++.++.++|
T Consensus 93 ~vi~~---D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~~--~~~~~~lvG~S~Gg~ia~~~a~~~p 167 (377)
T 1k8q_A 93 DVWLG---NSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNP 167 (377)
T ss_dssp EEEEC---CCTTSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCH
T ss_pred CEEEe---cCCCCCCCCCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHhc--CcCceEEEEechhhHHHHHHHhcCc
Confidence 99994 45677766431 123456666 9999999887652 3468999999999999999999999
Q ss_pred C---cccEEEEcccCCCCCCCCcCccc-------------------ccchhh----------------------------
Q 002209 782 H---LFCCGIARSGAYNRTLTPFGFQN-------------------EDRTLW---------------------------- 811 (953)
Q Consensus 782 ~---~~~a~v~~~~~~d~~~~~~~~~~-------------------~~~~~~---------------------------- 811 (953)
+ +++++|+++|..........+.. .....+
T Consensus 168 ~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (377)
T 1k8q_A 168 KLAKRIKTFYALAPVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFD 247 (377)
T ss_dssp HHHTTEEEEEEESCCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCC
T ss_pred hhhhhhhEEEEeCCchhcccchhHHHHHHhhccHHHHhhcCccccCcHHHHHHHHHHHhhCCccHHHHHHHHHHHhcCCC
Confidence 8 89999999987543211000000 000000
Q ss_pred ------hhHHHH----------------------------------------HhcC-cccccCCCCCcEEEEEeCCCCCC
Q 002209 812 ------EATSTY----------------------------------------VEMS-PFMSANKLKKPILLVHGEEDNNS 844 (953)
Q Consensus 812 ------~~~~~~----------------------------------------~~~s-p~~~~~~i~~P~Li~~G~~D~~v 844 (953)
+....+ .... +...+.++++|+|++||++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~ 327 (377)
T 1k8q_A 248 TMNLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLA 327 (377)
T ss_dssp GGGSCGGGHHHHHTTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSS
T ss_pred cccCCHHHHHHHhccCCCCccHHHHHHHHHHHhcCCeeeccCCcchhhHHHcCCCCCcccCHhhCCCCEEEEEeCCCccc
Confidence 000000 0000 12237788999999999999999
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC--cccHHHHHHHHHHHHHHh
Q 002209 845 GTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA--RESIMHVLWETDRWLQKY 897 (953)
Q Consensus 845 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~--~~~~~~~~~~i~~fl~~~ 897 (953)
| ++.+.++++.+... .++++++++||.... .+....+.+.+.+||++|
T Consensus 328 ~--~~~~~~~~~~~~~~---~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 377 (377)
T 1k8q_A 328 D--PHDVDLLLSKLPNL---IYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGTD 377 (377)
T ss_dssp C--HHHHHHHHTTCTTE---EEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHTC
T ss_pred C--HHHHHHHHHhCcCc---ccEEecCCCCceEEEecCCcHHHHHHHHHHHhccC
Confidence 8 88888887766432 248899999998642 356678889999999753
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-16 Score=185.51 Aligned_cols=329 Identities=11% Similarity=0.065 Sum_probs=199.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
....++|||||++||+.... .+.||++.+ + ...+.+.++. .
T Consensus 20 ~~~~~~~spdg~~l~~~~~~----------------------------------~v~l~~~~~-~--~~~~~~~~h~--~ 60 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGT----------------------------------SVYTVPVGS-L--TDTEIYTEHS--H 60 (611)
T ss_dssp CCCCCEECTTSSEEEEEETT----------------------------------EEEEEETTC-S--SCCEEECCCS--S
T ss_pred ceeEEeeCCCCCEEEeCCCC----------------------------------EEEEecCCC-c--ccCeEecCCC--C
Confidence 35578899999999998753 678999843 2 2334444433 4
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCcee---ecccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR---PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~---~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
.+...+|||||++||... ....|.++|+.+++.. .+..+.. .+..++|+|||+.|+.+..+.
T Consensus 61 ~v~~~~~spdg~~lasg~---------~d~~v~lWd~~~~~~~~~~~~~~~~~-----~v~~v~fs~dg~~l~~~~~~~- 125 (611)
T 1nr0_A 61 QTTVAKTSPSGYYCASGD---------VHGNVRIWDTTQTTHILKTTIPVFSG-----PVKDISWDSESKRIAAVGEGR- 125 (611)
T ss_dssp CEEEEEECTTSSEEEEEE---------TTSEEEEEESSSTTCCEEEEEECSSS-----CEEEEEECTTSCEEEEEECCS-
T ss_pred ceEEEEECCCCcEEEEEe---------CCCCEEEeECCCCcceeeEeecccCC-----ceEEEEECCCCCEEEEEECCC-
Confidence 689999999999999855 2557888888654432 2222222 277999999999998762110
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccCCCCcE
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDG~~ 345 (953)
+ ....+++++.......+... ..+..++|+|||+.
T Consensus 126 -------------------------------------~-------~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~ 161 (611)
T 1nr0_A 126 -------------------------------------E-------RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF 161 (611)
T ss_dssp -------------------------------------S-------CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSC
T ss_pred -------------------------------------C-------ceeEEEEeeCCCCcceecCCCCCceEEEECCCCCe
Confidence 0 11345555542223334444 77889999999985
Q ss_pred -EEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 346 -ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 346 -l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
|+..+.+ +.|.+||....... .+..+ ...+..++|+|||+.++-.
T Consensus 162 ~l~s~s~D-------------~~v~lwd~~~~~~~~~l~~H-------------~~~V~~v~fspdg~~las~------- 208 (611)
T 1nr0_A 162 RIISGSDD-------------NTVAIFEGPPFKFKSTFGEH-------------TKFVHSVRYNPDGSLFAST------- 208 (611)
T ss_dssp EEEEEETT-------------SCEEEEETTTBEEEEEECCC-------------SSCEEEEEECTTSSEEEEE-------
T ss_pred EEEEEeCC-------------CeEEEEECCCCeEeeeeccc-------------cCceEEEEECCCCCEEEEE-------
Confidence 6655533 38999998755432 33222 2345789999999976655
Q ss_pred CcccccccCCeEEEEecCCCCCCCceEEe-------ecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcE
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILH-------KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~~~l~-------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (953)
+..+.+.+|++ .++.....+. .+...+..++|+|||+.|+..+.++ .+.++|+.++ +..
T Consensus 209 ------s~D~~i~lwd~--~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~----~v~lWd~~~~--~~~ 274 (611)
T 1nr0_A 209 ------GGDGTIVLYNG--VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK----TIKIWNVATL--KVE 274 (611)
T ss_dssp ------ETTSCEEEEET--TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTT--EEE
T ss_pred ------ECCCcEEEEEC--CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC----eEEEEeCCCC--cee
Confidence 44567899995 2332223332 3556677899999999998876554 3455566553 212
Q ss_pred EeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccce
Q 002209 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYY 576 (953)
Q Consensus 497 ~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~ 576 (953)
......... . ........+++.++....+ ..+.+||..+++..+...+...
T Consensus 275 ~~~~~~~~~-~----~~~~~~~~~~~~l~s~s~d---------------------~~i~~~~~~~~~~~~~~~gh~~--- 325 (611)
T 1nr0_A 275 KTIPVGTRI-E----DQQLGIIWTKQALVSISAN---------------------GFINFVNPELGSIDQVRYGHNK--- 325 (611)
T ss_dssp EEEECCSSG-G----GCEEEEEECSSCEEEEETT---------------------CCEEEEETTTTEEEEEECCCSS---
T ss_pred eeecCCCCc-c----ceeEEEEEcCCEEEEEeCC---------------------CcEEEEeCCCCCcceEEcCCCC---
Confidence 111111000 0 0002223356666555421 1388899887765444332211
Q ss_pred eeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEE
Q 002209 577 ETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQI 624 (953)
Q Consensus 577 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~L 624 (953)
.+.. .+|+|||+.++..... ..+.++++.+++...+
T Consensus 326 -~v~~-------l~~spdg~~l~s~s~D----~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 326 -AITA-------LSSSADGKTLFSADAE----GHINSWDISTGISNRV 361 (611)
T ss_dssp -CEEE-------EEECTTSSEEEEEETT----SCEEEEETTTCCEEEC
T ss_pred -CEEE-------EEEeCCCCEEEEEeCC----CcEEEEECCCCceeee
Confidence 1222 4689999977644433 3588999988865543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-16 Score=171.56 Aligned_cols=268 Identities=13% Similarity=0.140 Sum_probs=175.7
Q ss_pred CCCCceecCC----CCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecC
Q 002209 110 PLPALSFSPQ----RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF 185 (953)
Q Consensus 110 ~~~~~~~SPD----G~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~ 185 (953)
.+..++|||+ |+.|+..+.+ +.|.||++.. +.......+.+.
T Consensus 34 ~V~~v~~~~~~~~~~~~l~tgs~D---------------------------------~~v~vW~~~~-~~~~~~~~l~gh 79 (321)
T 3ow8_A 34 AIWSVAWGTNKKENSETVVTGSLD---------------------------------DLVKVWKWRD-ERLDLQWSLEGH 79 (321)
T ss_dssp CEEEEEEC-------CEEEEEETT---------------------------------SCEEEEEEET-TEEEEEEEECCC
T ss_pred cEEEEEEecCCCCCCCEEEEEcCC---------------------------------CCEEEEECCC-CCeeeeeeeccC
Confidence 5778899885 5678877765 3678998843 110111123332
Q ss_pred CCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCC
Q 002209 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (953)
Q Consensus 186 ~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 265 (953)
. ..+....|+|+++.++..+ ....|.++|+.+++........... +..++|+|||+.|+...
T Consensus 80 ~--~~v~~~~~~~~~~~l~s~s---------~D~~i~lWd~~~~~~~~~~~~~~~~----~~~~~~spdg~~l~~g~--- 141 (321)
T 3ow8_A 80 Q--LGVVSVDISHTLPIAASSS---------LDAHIRLWDLENGKQIKSIDAGPVD----AWTLAFSPDSQYLATGT--- 141 (321)
T ss_dssp S--SCEEEEEECSSSSEEEEEE---------TTSEEEEEETTTTEEEEEEECCTTC----CCCEEECTTSSEEEEEC---
T ss_pred C--CCEEEEEECCCCCEEEEEe---------CCCcEEEEECCCCCEEEEEeCCCcc----EEEEEECCCCCEEEEEc---
Confidence 2 3688899999999888754 2568889999888764433322221 55799999999998761
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-CcccccccCCC
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPD 342 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpD 342 (953)
..+.+.++++ +++. ..+... ..+..++||||
T Consensus 142 ----------------------------------------------~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spd 175 (321)
T 3ow8_A 142 ----------------------------------------------HVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPD 175 (321)
T ss_dssp ----------------------------------------------TTSEEEEEETTTCSEEEEEECSSSCEEEEEECTT
T ss_pred ----------------------------------------------CCCcEEEEEcCCCceeEEecCCCceEEEEEECCC
Confidence 2245667787 5543 333333 66788999999
Q ss_pred CcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002209 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 343 G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
|++|+..+.+. .|.+||+.+++. ..+..+. ..+..++|+|||+.|+..
T Consensus 176 g~~lasg~~dg-------------~i~iwd~~~~~~~~~~~~h~-------------~~v~~l~~spd~~~l~s~----- 224 (321)
T 3ow8_A 176 GKYLASGAIDG-------------IINIFDIATGKLLHTLEGHA-------------MPIRSLTFSPDSQLLVTA----- 224 (321)
T ss_dssp SSEEEEEETTS-------------CEEEEETTTTEEEEEECCCS-------------SCCCEEEECTTSCEEEEE-----
T ss_pred CCEEEEEcCCC-------------eEEEEECCCCcEEEEEcccC-------------CceeEEEEcCCCCEEEEE-----
Confidence 99999887443 899999986553 3333221 335689999999976655
Q ss_pred CCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecC
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 501 (953)
+..+.|.+||+ ..+.....+..+...+..++|+|||+.|+..+.++ .+.++|+.++ +.......
T Consensus 225 --------s~dg~i~iwd~--~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~----~v~iwd~~~~--~~~~~~~~ 288 (321)
T 3ow8_A 225 --------SDDGYIKIYDV--QHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDK----SVKVWDVGTR--TCVHTFFD 288 (321)
T ss_dssp --------CTTSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTTT--EEEEEECC
T ss_pred --------cCCCeEEEEEC--CCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCC----cEEEEeCCCC--EEEEEEcC
Confidence 44567899996 23333344555666778899999999988876554 3445566553 23333333
Q ss_pred CCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 502 SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 502 ~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
....+.. +.|+|||++|+...
T Consensus 289 h~~~v~~------v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 289 HQDQVWG------VKYNGNGSKIVSVG 309 (321)
T ss_dssp CSSCEEE------EEECTTSSEEEEEE
T ss_pred CCCcEEE------EEECCCCCEEEEEe
Confidence 3333443 78999999988766
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.4e-18 Score=177.10 Aligned_cols=201 Identities=15% Similarity=0.122 Sum_probs=146.9
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
+...+.-.+|..+...+|.|.+ ++.|+||++|||.+..+. ...| ......|+++||.|+.++
T Consensus 39 ~~~~i~~~~~~~~~~~~~~p~~------~~~p~vv~~HGgg~~~~~--------~~~~----~~~~~~l~~~G~~v~~~d 100 (262)
T 2pbl_A 39 ARLNLSYGEGDRHKFDLFLPEG------TPVGLFVFVHGGYWMAFD--------KSSW----SHLAVGALSKGWAVAMPS 100 (262)
T ss_dssp EEEEEESSSSTTCEEEEECCSS------SCSEEEEEECCSTTTSCC--------GGGC----GGGGHHHHHTTEEEEEEC
T ss_pred CccccccCCCCCceEEEEccCC------CCCCEEEEEcCcccccCC--------hHHH----HHHHHHHHhCCCEEEEeC
Confidence 3344544566667788888864 247999999997432111 1112 123557788999999977
Q ss_pred CCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC------CCcccEEEEcccC
Q 002209 720 TTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA------PHLFCCGIARSGA 793 (953)
Q Consensus 720 ~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~------p~~~~a~v~~~~~ 793 (953)
++ |.+. ......+.|+.++++++..+.. ++++|+||||||.+++.++.++ |++++++|+++|+
T Consensus 101 ~~---~~~~-----~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~ 169 (262)
T 2pbl_A 101 YE---LCPE-----VRISEITQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPL 169 (262)
T ss_dssp CC---CTTT-----SCHHHHHHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCC
T ss_pred CC---CCCC-----CChHHHHHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCc
Confidence 64 4332 2356778999999999988653 6999999999999999999887 7899999999998
Q ss_pred CCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002209 794 YNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (953)
Q Consensus 794 ~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (953)
++.......+ ...........+...+|...+.++++|+|++||++|..++ ++++.++++.++ +++++++++
T Consensus 170 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~~~-----~~~~~~~~~ 240 (262)
T 2pbl_A 170 SDLRPLLRTS--MNEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAERPAF--LDQAIWLVEAWD-----ADHVIAFEK 240 (262)
T ss_dssp CCCGGGGGST--THHHHCCCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHH--HHHHHHHHHHHT-----CEEEEETTC
T ss_pred cCchHHHhhh--hhhhhCCCHHHHHhcCcccccCCCCCCEEEEEeCCCCccc--HHHHHHHHHHhC-----CeEEEeCCC
Confidence 7642211111 0111112344556778888888999999999999999988 999999999886 689999999
Q ss_pred CccCC
Q 002209 874 SHGYA 878 (953)
Q Consensus 874 ~H~~~ 878 (953)
+|...
T Consensus 241 ~H~~~ 245 (262)
T 2pbl_A 241 HHFNV 245 (262)
T ss_dssp CTTTT
T ss_pred CcchH
Confidence 99764
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-15 Score=167.97 Aligned_cols=355 Identities=14% Similarity=0.086 Sum_probs=213.8
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
.|++||+.+ ++.... +..+..+..+.|||||++|+++.. ....|+++|+.+++.......+..
T Consensus 13 ~v~v~d~~~----~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~--------~d~~i~v~d~~~~~~~~~~~~~~~--- 75 (391)
T 1l0q_A 13 NISVIDVTS----NKVTAT--IPVGSNPMGAVISPDGTKVYVANA--------HSNDVSIIDTATNNVIATVPAGSS--- 75 (391)
T ss_dssp EEEEEETTT----TEEEEE--EECSSSEEEEEECTTSSEEEEEEG--------GGTEEEEEETTTTEEEEEEECSSS---
T ss_pred EEEEEECCC----CeEEEE--eecCCCcceEEECCCCCEEEEECC--------CCCeEEEEECCCCeEEEEEECCCC---
Confidence 689999853 332222 223345788999999999877642 256899999998887655444432
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~ 322 (953)
+..++|+|||+.|+++.. ....|+++|+ +
T Consensus 76 --v~~~~~spdg~~l~~~~~------------------------------------------------~~~~v~v~d~~~ 105 (391)
T 1l0q_A 76 --PQGVAVSPDGKQVYVTNM------------------------------------------------ASSTLSVIDTTS 105 (391)
T ss_dssp --EEEEEECTTSSEEEEEET------------------------------------------------TTTEEEEEETTT
T ss_pred --ccceEECCCCCEEEEEEC------------------------------------------------CCCEEEEEECCC
Confidence 678999999999887610 2256888999 7
Q ss_pred CceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCc
Q 002209 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (953)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~ 401 (953)
++....... ..+..++|+|||++|+++... .+.|++||+.+++........ ..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------~~~v~~~d~~~~~~~~~~~~~-------------~~~ 160 (391)
T 1l0q_A 106 NTVAGTVKTGKSPLGLALSPDGKKLYVTNNG------------DKTVSVINTVTKAVINTVSVG-------------RSP 160 (391)
T ss_dssp TEEEEEEECSSSEEEEEECTTSSEEEEEETT------------TTEEEEEETTTTEEEEEEECC-------------SSE
T ss_pred CeEEEEEeCCCCcceEEECCCCCEEEEEeCC------------CCEEEEEECCCCcEEEEEecC-------------CCc
Confidence 765444333 667889999999999777632 348999999866554332211 223
Q ss_pred cceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCce
Q 002209 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (953)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 481 (953)
..+.|+|||+.+++.. ...+.|+++|+ ..++.............+.|+|||++|++..... ...
T Consensus 161 ~~~~~~~dg~~l~~~~------------~~~~~v~~~d~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-~~~ 224 (391)
T 1l0q_A 161 KGIAVTPDGTKVYVAN------------FDSMSISVIDT---VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK-YFN 224 (391)
T ss_dssp EEEEECTTSSEEEEEE------------TTTTEEEEEET---TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS-SCC
T ss_pred ceEEECCCCCEEEEEe------------CCCCEEEEEEC---CCCeEEEEEecCCCccceEECCCCCEEEEEecCc-CCC
Confidence 5789999998765541 23457999996 4444444444445567789999999998876421 123
Q ss_pred EEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCC
Q 002209 482 RTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINT 561 (953)
Q Consensus 482 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~ 561 (953)
.++++|+.++ +.......... ... +.|+|||++|+..... ...+++||+.+
T Consensus 225 ~v~~~d~~~~--~~~~~~~~~~~-~~~------~~~s~dg~~l~~s~~~--------------------d~~v~v~d~~~ 275 (391)
T 1l0q_A 225 TVSMIDTGTN--KITARIPVGPD-PAG------IAVTPDGKKVYVALSF--------------------XNTVSVIDTAT 275 (391)
T ss_dssp EEEEEETTTT--EEEEEEECCSS-EEE------EEECTTSSEEEEEETT--------------------TTEEEEEETTT
T ss_pred cEEEEECCCC--eEEEEEecCCC-ccE------EEEccCCCEEEEEcCC--------------------CCEEEEEECCC
Confidence 7888898775 32322222211 111 7899999988766421 13599999998
Q ss_pred CceEEEeccCcccce-eeeEeeccCC---ccccccccC--------CEEEEEEecCCCCceEEEEECCCCCeeEEecCCC
Q 002209 562 GSKERIWESDKEKYY-ETTVALMSDQ---TEGDLYLNQ--------LKILTSKESKTENTQYYIQSWPDKKSCQITDFPH 629 (953)
Q Consensus 562 ~~~~~l~~~~~~~~~-~~~~~~~~~~---~~~~~s~dg--------~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~~ 629 (953)
++...........+. .......... ....|+.+. ..+.|.. .......|.|+..+|......+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~--~~~~~~~~~W~~~~g~~~~~~~--- 350 (391)
T 1l0q_A 276 NTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTD--LSKDATEWKWDFGDGSSSKKQN--- 350 (391)
T ss_dssp TEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEE--CCBSCSEEEEECSSSCEECSSS---
T ss_pred CcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEe--CCCCceEEEEECCCCcccCcCC---
Confidence 887665443322100 0000110000 011233322 1133432 2234568889988876432211
Q ss_pred CCCCcC--CCceEEEEEEcCCC--cEEEEEEEcCC
Q 002209 630 PYPQLA--SLQKELIKYQRKDG--VQLSATLYLPP 660 (953)
Q Consensus 630 ~~~~~~--~~~~~~~~~~~~dg--~~~~~~l~~P~ 660 (953)
+...+. ..-...+++.+.+| .++....+.++
T Consensus 351 ~~~~~~~~g~y~~~~~~~~~~g~~~~~~~~~v~~~ 385 (391)
T 1l0q_A 351 PTHTYSETGIYTVRLTVSNSNGTDSQISTVNVVLK 385 (391)
T ss_dssp CEECCSSCEEEEEEEEEEETTEEEEEEEEEEEECT
T ss_pred CeEEeCCCceEEEEEEEECCCCcEEEEEEEEEEcC
Confidence 111222 22245677788888 35555555543
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8.4e-18 Score=189.11 Aligned_cols=229 Identities=12% Similarity=0.051 Sum_probs=152.2
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
...+.++++. +|..+.++++.|.+ .++.|+||++||.... ...........++++||.|+
T Consensus 166 ~~~~~v~i~~-~g~~l~~~~~~P~~-----~~~~P~vv~~hG~~~~--------------~~~~~~~~~~~l~~~G~~V~ 225 (415)
T 3mve_A 166 YIIKQLEIPF-EKGKITAHLHLTNT-----DKPHPVVIVSAGLDSL--------------QTDMWRLFRDHLAKHDIAML 225 (415)
T ss_dssp SEEEEEEEEC-SSSEEEEEEEESCS-----SSCEEEEEEECCTTSC--------------GGGGHHHHHHTTGGGTCEEE
T ss_pred CCeEEEEEEE-CCEEEEEEEEecCC-----CCCCCEEEEECCCCcc--------------HHHHHHHHHHHHHhCCCEEE
Confidence 3577888886 78899999999975 2358999999995311 00111123456778999999
Q ss_pred EcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC
Q 002209 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~ 796 (953)
.+|+ +|+|.+...... .........+++++.....+|.++|+|+|||+||++++.++..+|++++++|+++|+.+.
T Consensus 226 ~~D~---~G~G~s~~~~~~-~~~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~ 301 (415)
T 3mve_A 226 TVDM---PSVGYSSKYPLT-EDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHD 301 (415)
T ss_dssp EECC---TTSGGGTTSCCC-SCTTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSH
T ss_pred EECC---CCCCCCCCCCCC-CCHHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCcccc
Confidence 9555 566666432110 111122256777888877788899999999999999999999998999999999987542
Q ss_pred CCCCcCcccc-------------cchhhhhH---HHHHhcCcccc----cCCCCCcEEEEEeCCCCCCCCchHHHHHHHH
Q 002209 797 TLTPFGFQNE-------------DRTLWEAT---STYVEMSPFMS----ANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (953)
Q Consensus 797 ~~~~~~~~~~-------------~~~~~~~~---~~~~~~sp~~~----~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~ 856 (953)
......+... ........ ..+..+++... +.++++|+|++||++|..+| +..+..+++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp--~~~~~~l~~ 379 (415)
T 3mve_A 302 IFASPQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSP--YSDNQMVAF 379 (415)
T ss_dssp HHHCHHHHTTSCHHHHHHHHHHTTCSSBCHHHHHHHGGGGCTTTTTTTTSSCBSSCEEEEEETTCSSSC--HHHHHHHHH
T ss_pred ccccHHHHHHhHHHHHHHHHHHhCCCccCHHHHHHHHhhcCcccccccccCCCCCCEEEEEeCCCCCCC--HHHHHHHHH
Confidence 1110000000 00000001 11222333222 45789999999999999998 888777665
Q ss_pred HHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 857 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
.+.+++++++++..| ......+...+.+||.++++
T Consensus 380 ----~~~~~~l~~i~g~~~----h~~~~~~~~~i~~fL~~~L~ 414 (415)
T 3mve_A 380 ----FSTYGKAKKISSKTI----TQGYEQSLDLAIKWLEDELL 414 (415)
T ss_dssp ----TBTTCEEEEECCCSH----HHHHHHHHHHHHHHHHHHHT
T ss_pred ----hCCCceEEEecCCCc----ccchHHHHHHHHHHHHHHhc
Confidence 455679999998222 12456788899999999874
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=164.46 Aligned_cols=181 Identities=15% Similarity=0.112 Sum_probs=135.6
Q ss_pred CccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhh---------hhhhHHHH
Q 002209 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA---------NDRFVEQL 739 (953)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~---------~~~~~~~~ 739 (953)
+.|+||++||+... ...| ......|++ ||.|+.++. +..|+|.+.. ........
T Consensus 37 ~~~~vv~~HG~~~~-----------~~~~----~~~~~~l~~-g~~v~~~~~-d~~g~g~s~~~~~~~~~~~~~~~~~~~ 99 (226)
T 2h1i_A 37 SKPVLLLLHGTGGN-----------ELDL----LPLAEIVDS-EASVLSVRG-NVLENGMPRFFRRLAEGIFDEEDLIFR 99 (226)
T ss_dssp TSCEEEEECCTTCC-----------TTTT----HHHHHHHHT-TSCEEEECC-SEEETTEEESSCEEETTEECHHHHHHH
T ss_pred CCcEEEEEecCCCC-----------hhHH----HHHHHHhcc-CceEEEecC-cccCCcchhhccccCccCcChhhHHHH
Confidence 47999999996311 1111 233445555 999999643 4456665421 11223445
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHh
Q 002209 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819 (953)
Q Consensus 740 ~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 819 (953)
+.++.++++++.+...++.++++++|||+||.+++.++.++|++++++|+++|......
T Consensus 100 ~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~--------------------- 158 (226)
T 2h1i_A 100 TKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG--------------------- 158 (226)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS---------------------
T ss_pred HHHHHHHHHHHHhhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc---------------------
Confidence 66777777777777777889999999999999999999999999999999998754211
Q ss_pred cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 820 ~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
......+++|+|+++|+.|..++ ...+.++++.++..+.++++ ++++++|.+. .+..+.+.+||.++|
T Consensus 159 ---~~~~~~~~~p~l~~~G~~D~~~~--~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~l 226 (226)
T 2h1i_A 159 ---MQLANLAGKSVFIAAGTNDPICS--SAESEELKVLLENANANVTM-HWENRGHQLT-----MGEVEKAKEWYDKAF 226 (226)
T ss_dssp ---CCCCCCTTCEEEEEEESSCSSSC--HHHHHHHHHHHHTTTCEEEE-EEESSTTSCC-----HHHHHHHHHHHHHHC
T ss_pred ---cccccccCCcEEEEeCCCCCcCC--HHHHHHHHHHHHhcCCeEEE-EeCCCCCCCC-----HHHHHHHHHHHHHhC
Confidence 11223357899999999999998 99999999999998888998 9999999873 345688899998864
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=163.79 Aligned_cols=185 Identities=14% Similarity=0.154 Sum_probs=138.0
Q ss_pred CCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH--cCcEEEEcCCC----------------CCCCCCCh
Q 002209 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA--RGFAILGGPTT----------------PIIGEGDE 729 (953)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~G~~V~~~~~~----------------~~~G~G~~ 729 (953)
.+.|+||++||+.... ..| ......|++ +||.|+.++.. +..|+|.+
T Consensus 22 ~~~~~vv~lHG~~~~~-----------~~~----~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~ 86 (226)
T 3cn9_A 22 NADACIIWLHGLGADR-----------TDF----KPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPA 86 (226)
T ss_dssp TCCEEEEEECCTTCCG-----------GGG----HHHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSST
T ss_pred CCCCEEEEEecCCCCh-----------HHH----HHHHHHHhhcCCCcEEEeecCCCCccccCCCCcccccccccccccc
Confidence 3589999999963211 111 234556777 99999997653 44466643
Q ss_pred hhh-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH-hCCCcccEEEEcccCCCCCCCCcCccccc
Q 002209 730 EAN-DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA-HAPHLFCCGIARSGAYNRTLTPFGFQNED 807 (953)
Q Consensus 730 ~~~-~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~~~~d~~~~~~~~~~~~ 807 (953)
... .......++++..+++.+.+ ..++.++++|+|||+||.+++.++. ++|++++++|+++|..+....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~-------- 157 (226)
T 3cn9_A 87 RAIDEDQLNASADQVIALIDEQRA-KGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDD-------- 157 (226)
T ss_dssp TCBCHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGG--------
T ss_pred ccccchhHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchh--------
Confidence 221 23345667777777777766 3467789999999999999999999 999999999999986432100
Q ss_pred chhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHH
Q 002209 808 RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVL 887 (953)
Q Consensus 808 ~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~ 887 (953)
+ .. ...++++|+|+++|+.|..+| ++.+.++++.++..+.++++++++ ++|.+. .+..
T Consensus 158 ---~-------~~----~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~~-----~~~~ 215 (226)
T 3cn9_A 158 ---L-------AL----DERHKRIPVLHLHGSQDDVVD--PALGRAAHDALQAQGVEVGWHDYP-MGHEVS-----LEEI 215 (226)
T ss_dssp ---C-------CC----CTGGGGCCEEEEEETTCSSSC--HHHHHHHHHHHHHTTCCEEEEEES-CCSSCC-----HHHH
T ss_pred ---h-------hh----cccccCCCEEEEecCCCCccC--HHHHHHHHHHHHHcCCceeEEEec-CCCCcc-----hhhH
Confidence 0 01 124567899999999999998 999999999999988899999999 999874 2346
Q ss_pred HHHHHHHHHhc
Q 002209 888 WETDRWLQKYC 898 (953)
Q Consensus 888 ~~i~~fl~~~l 898 (953)
+.+.+||.++|
T Consensus 216 ~~i~~~l~~~l 226 (226)
T 3cn9_A 216 HDIGAWLRKRL 226 (226)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhhC
Confidence 78999998874
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6e-17 Score=168.99 Aligned_cols=203 Identities=14% Similarity=0.056 Sum_probs=143.8
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh---hh-hHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DR-FVEQLVACAEA 745 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~-~~~~~~~D~~~ 745 (953)
.|+||++||..... ..| ......|+++||.|+.+ +.+|+|.+... .. .....++|+.+
T Consensus 22 ~~~vv~~HG~~~~~-----------~~~----~~~~~~l~~~G~~v~~~---d~~g~g~s~~~~~~~~~~~~~~~~d~~~ 83 (251)
T 3dkr_A 22 DTGVVLLHAYTGSP-----------NDM----NFMARALQRSGYGVYVP---LFSGHGTVEPLDILTKGNPDIWWAESSA 83 (251)
T ss_dssp SEEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEEC---CCTTCSSSCTHHHHHHCCHHHHHHHHHH
T ss_pred CceEEEeCCCCCCH-----------HHH----HHHHHHHHHCCCEEEec---CCCCCCCCChhhhcCcccHHHHHHHHHH
Confidence 68899999953211 111 34566788899999994 45677776332 12 45666889999
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccc-------------c-----
Q 002209 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE-------------D----- 807 (953)
Q Consensus 746 ~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~-------------~----- 807 (953)
+++++... .++++++|||+||.+++.++.++|++++++++.+|.............. .
T Consensus 84 ~i~~l~~~----~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (251)
T 3dkr_A 84 AVAHMTAK----YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLKYAEYMNRLAGKSDESTQIL 159 (251)
T ss_dssp HHHHHHTT----CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHh----cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHHHHHHHHHHhhcccCcchhhHH
Confidence 99999876 4699999999999999999999999999999988876532111000000 0
Q ss_pred chhhhhHHHHHhc--CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHH
Q 002209 808 RTLWEATSTYVEM--SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH 885 (953)
Q Consensus 808 ~~~~~~~~~~~~~--sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~ 885 (953)
.........+... .....+.++++|+|+++|++|..+| +..+.++++.+... .+++++++++++|.+....+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~ 236 (251)
T 3dkr_A 160 AYLPGQLAAIDQFATTVAADLNLVKQPTFIGQAGQDELVD--GRLAYQLRDALINA-ARVDFHWYDDAKHVITVNSAHHA 236 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSBC--TTHHHHHHHHCTTC-SCEEEEEETTCCSCTTTSTTHHH
T ss_pred hhhHHHHHHHHHHHHHHhccccccCCCEEEEecCCCcccC--hHHHHHHHHHhcCC-CCceEEEeCCCCcccccccchhH
Confidence 0000000001100 1234567789999999999999998 89999998888764 56899999999999865555788
Q ss_pred HHHHHHHHHHHh
Q 002209 886 VLWETDRWLQKY 897 (953)
Q Consensus 886 ~~~~i~~fl~~~ 897 (953)
+.+.+.+||+++
T Consensus 237 ~~~~i~~fl~~~ 248 (251)
T 3dkr_A 237 LEEDVIAFMQQE 248 (251)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.9e-17 Score=166.93 Aligned_cols=189 Identities=14% Similarity=0.125 Sum_probs=133.1
Q ss_pred CccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHc-----CcEEEEcCCC----------------CCCCCC
Q 002209 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-----GFAILGGPTT----------------PIIGEG 727 (953)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-----G~~V~~~~~~----------------~~~G~G 727 (953)
+.|+||++||..... ..| ..+...|+.+ ||.|+.++.. +..|.+
T Consensus 22 ~~p~vv~lHG~g~~~-----------~~~----~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 86 (239)
T 3u0v_A 22 HSASLIFLHGSGDSG-----------QGL----RMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKIT 86 (239)
T ss_dssp CCEEEEEECCTTCCH-----------HHH----HHHHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSS
T ss_pred CCcEEEEEecCCCch-----------hhH----HHHHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCC
Confidence 589999999952110 001 1234455554 6888986652 222222
Q ss_pred Chhhh-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccc
Q 002209 728 DEEAN-DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE 806 (953)
Q Consensus 728 ~~~~~-~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~ 806 (953)
..... .........++...++.+.+ ..+|.++++|+||||||++++.++.++|+.++++|+++|..+....
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~------- 158 (239)
T 3u0v_A 87 NDCPEHLESIDVMCQVLTDLIDEEVK-SGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASA------- 158 (239)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTCH-------
T ss_pred cccccchhhHHHHHHHHHHHHHHHHH-hCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchhH-------
Confidence 22111 12345556666666666554 3478899999999999999999999999999999999987542110
Q ss_pred cchhhhhHHHHHhcCcccccCCCCCc-EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHH
Q 002209 807 DRTLWEATSTYVEMSPFMSANKLKKP-ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH 885 (953)
Q Consensus 807 ~~~~~~~~~~~~~~sp~~~~~~i~~P-~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~ 885 (953)
.. ..+. ......| +|++||++|..|| ++++.++++.+++.+.+++++++++++|.+. .+
T Consensus 159 ---~~---~~~~-------~~~~~~pp~li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~-----~~ 218 (239)
T 3u0v_A 159 ---VY---QALQ-------KSNGVLPELFQCHGTADELVL--HSWAEETNSMLKSLGVTTKFHSFPNVYHELS-----KT 218 (239)
T ss_dssp ---HH---HHHH-------HCCSCCCCEEEEEETTCSSSC--HHHHHHHHHHHHHTTCCEEEEEETTCCSSCC-----HH
T ss_pred ---HH---HHHH-------hhccCCCCEEEEeeCCCCccC--HHHHHHHHHHHHHcCCcEEEEEeCCCCCcCC-----HH
Confidence 00 0011 1234566 9999999999999 9999999999999999999999999999985 45
Q ss_pred HHHHHHHHHHHhccC
Q 002209 886 VLWETDRWLQKYCVS 900 (953)
Q Consensus 886 ~~~~i~~fl~~~l~~ 900 (953)
..+.+.+||.+++..
T Consensus 219 ~~~~~~~~l~~~l~~ 233 (239)
T 3u0v_A 219 ELDILKLWILTKLPG 233 (239)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhCCC
Confidence 578899999999853
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=179.98 Aligned_cols=226 Identities=17% Similarity=0.118 Sum_probs=153.2
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCcEEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAIL 716 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~ 716 (953)
..+.+++++.+| .+.+++| |. .++.|+||++|||.+.. +....+ ......|+ ..||.|+
T Consensus 55 ~~~~~~i~~~~g-~i~~~~y-~~------~~~~p~vv~~HGgg~~~--------g~~~~~----~~~~~~la~~~g~~Vv 114 (311)
T 1jji_A 55 RVEDRTIKGRNG-DIRVRVY-QQ------KPDSPVLVYYHGGGFVI--------CSIESH----DALCRRIARLSNSTVV 114 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEE-ES------SSSEEEEEEECCSTTTS--------CCTGGG----HHHHHHHHHHHTSEEE
T ss_pred eEEEEEecCCCC-cEEEEEE-cC------CCCceEEEEECCccccc--------CChhHh----HHHHHHHHHHhCCEEE
Confidence 478888988887 8999998 42 23489999999975322 111111 23455677 5899999
Q ss_pred EcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCCCc----ccEEEE
Q 002209 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAPHL----FCCGIA 789 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~----~~a~v~ 789 (953)
.+++ +|.|.+.. .....|+.++++|+.+. ..+|+++|+|+|+|+||++++.++.+.|++ ++++|+
T Consensus 115 ~~dy---rg~g~~~~-----p~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl 186 (311)
T 1jji_A 115 SVDY---RLAPEHKF-----PAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQIL 186 (311)
T ss_dssp EEEC---CCTTTSCT-----THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred EecC---CCCCCCCC-----CCcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 9666 46665432 34567888888888765 246778999999999999999999887655 999999
Q ss_pred cccCCCCCCCCcCcccc-cchh-hh--h----HHHH---------HhcCccc-ccCCCCCcEEEEEeCCCCCCCCchHHH
Q 002209 790 RSGAYNRTLTPFGFQNE-DRTL-WE--A----TSTY---------VEMSPFM-SANKLKKPILLVHGEEDNNSGTLTMQS 851 (953)
Q Consensus 790 ~~~~~d~~~~~~~~~~~-~~~~-~~--~----~~~~---------~~~sp~~-~~~~i~~P~Li~~G~~D~~v~~~~~~~ 851 (953)
++|+.+.......+... .... +. . ...| ...+|+. .+..+ .|+||+||+.|..+ .++
T Consensus 187 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~-~P~li~~G~~D~l~----~~~ 261 (311)
T 1jji_A 187 IYPVVNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENL-PPALIITAEYDPLR----DEG 261 (311)
T ss_dssp ESCCCCSSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTC-CCEEEEEEEECTTH----HHH
T ss_pred eCCccCCCCCCccHHHhcCCCccCCHHHHHHHHHHhCCCCccCCCcccCcccccccCC-ChheEEEcCcCcch----HHH
Confidence 99987753211000000 0000 00 0 0001 0123332 12222 59999999999874 567
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHH
Q 002209 852 DRFFNALKGHGALCRLVILPFESHGYAA----RESIMHVLWETDRWLQK 896 (953)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~fl~~ 896 (953)
.+++++++..++++++++++|++|.+.. .+....+.+.+.+||.+
T Consensus 262 ~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 262 EVFGQMLRRAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEEECCCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 8899999999999999999999998743 23456777888888764
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.1e-17 Score=175.79 Aligned_cols=216 Identities=8% Similarity=0.030 Sum_probs=145.6
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCcEEEEcCCCCCCCCCChh
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEE 730 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~G~G~~~ 730 (953)
+.++++.|.+ ++.|+||++|||.+..+ ... ........|+ +.||.|+.+|+++. +.
T Consensus 84 ~~~~~~~p~~------~~~p~vv~lHGgg~~~~--------~~~----~~~~~~~~la~~~g~~vi~~D~r~~---~~-- 140 (326)
T 3d7r_A 84 MQVFRFNFRH------QIDKKILYIHGGFNALQ--------PSP----FHWRLLDKITLSTLYEVVLPIYPKT---PE-- 140 (326)
T ss_dssp EEEEEEESTT------CCSSEEEEECCSTTTSC--------CCH----HHHHHHHHHHHHHCSEEEEECCCCT---TT--
T ss_pred EEEEEEeeCC------CCCeEEEEECCCcccCC--------CCH----HHHHHHHHHHHHhCCEEEEEeCCCC---CC--
Confidence 5667788864 23699999999753211 000 1122344565 46999999777542 21
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc----ccEEEEcccCCCCCCCCcCcc-c
Q 002209 731 ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL----FCCGIARSGAYNRTLTPFGFQ-N 805 (953)
Q Consensus 731 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~~~~d~~~~~~~~~-~ 805 (953)
..+...++|+.++++++.+. ++.++++|+||||||.+|+.++.++|++ ++++|+++|+.+......... .
T Consensus 141 ---~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~~~~~~~ 215 (326)
T 3d7r_A 141 ---FHIDDTFQAIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSNKDISDA 215 (326)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTTCCHH
T ss_pred ---CCchHHHHHHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCChhHHhh
Confidence 12356688999999999877 6778999999999999999999987766 999999999877543221111 0
Q ss_pred c---cc-----hhhhhHHHHHh--------cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEE
Q 002209 806 E---DR-----TLWEATSTYVE--------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869 (953)
Q Consensus 806 ~---~~-----~~~~~~~~~~~--------~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~ 869 (953)
. .. ........|.. .+|+...-...+|+||+||++|.. ..++.++.++++..+.++++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~----~~~~~~~~~~l~~~~~~~~~~~ 291 (326)
T 3d7r_A 216 LIEQDAVLSQFGVNEIMKKWANGLPLTDKRISPINGTIEGLPPVYMFGGGREMT----HPDMKLFEQMMLQHHQYIEFYD 291 (326)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHTTSCTTSTTTSGGGSCCTTCCCEEEEEETTSTT----HHHHHHHHHHHHHTTCCEEEEE
T ss_pred hcccCcccCHHHHHHHHHHhcCCCCCCCCeECcccCCcccCCCEEEEEeCcccc----hHHHHHHHHHHHHCCCcEEEEE
Confidence 0 00 00000111111 123221111235999999999953 6678889999999999999999
Q ss_pred eCCCCccCCC--cccHHHHHHHHHHHHHHhcc
Q 002209 870 LPFESHGYAA--RESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 870 ~~~~~H~~~~--~~~~~~~~~~i~~fl~~~l~ 899 (953)
+|+++|.+.. .+....+.+.+.+||.+++.
T Consensus 292 ~~g~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 323 (326)
T 3d7r_A 292 YPKMVHDFPIYPIRQSHKAIKQIAKSIDEDVT 323 (326)
T ss_dssp ETTCCTTGGGSSSHHHHHHHHHHHHHHTSCCC
T ss_pred eCCCcccccccCCHHHHHHHHHHHHHHHHHhh
Confidence 9999998753 25567888999999987763
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-17 Score=178.10 Aligned_cols=228 Identities=15% Similarity=0.128 Sum_probs=147.0
Q ss_pred eEEEEEE---cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEE
Q 002209 639 KELIKYQ---RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (953)
Q Consensus 639 ~~~~~~~---~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (953)
...++|. ..+|..+.+++|.|++.. .+.|+||++||+..... .+.......++++||.|
T Consensus 24 ~~~~~~~~~~~~~~~~l~~~~~~P~~~~----~~~p~vv~lHG~~~~~~--------------~~~~~~~~~l~~~g~~v 85 (304)
T 3d0k_A 24 RNAIPYLDDDRNADRPFTLNTYRPYGYT----PDRPVVVVQHGVLRNGA--------------DYRDFWIPAADRHKLLI 85 (304)
T ss_dssp EEEEEECC---CTTCCEEEEEEECTTCC----TTSCEEEEECCTTCCHH--------------HHHHHTHHHHHHHTCEE
T ss_pred CceEEecccCCCCCceEEEEEEeCCCCC----CCCcEEEEeCCCCCCHH--------------HHHHHHHHHHHHCCcEE
Confidence 3456666 678889999999998642 24799999999642210 01012345677899999
Q ss_pred EEcCCCCC---------CCC--CChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-c
Q 002209 716 LGGPTTPI---------IGE--GDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-L 783 (953)
Q Consensus 716 ~~~~~~~~---------~G~--G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~ 783 (953)
+.++++.. .|+ |.+..........+.|+.++++++.++..+|.++|+|+||||||.+++.++.++|+ +
T Consensus 86 ~~~d~~~~~~p~~~~~~~g~~~g~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~ 165 (304)
T 3d0k_A 86 VAPTFSDEIWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAP 165 (304)
T ss_dssp EEEECCTTTSCHHHHTTTTTCBCTTSCBCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTT
T ss_pred EEeCCccccCCCccccccCccccccCCCCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCc
Confidence 99887632 032 33322111112344678889999988877889999999999999999999999985 7
Q ss_pred ccEEEEcc-cCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCc---------------
Q 002209 784 FCCGIARS-GAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTL--------------- 847 (953)
Q Consensus 784 ~~a~v~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~--------------- 847 (953)
++++|+.+ |.++.......+...... . ..+|......++.|+|++||+.|..+..+
T Consensus 166 ~~~~vl~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~p~li~~G~~D~~~~~p~~~~~~~~~~~~~~~ 237 (304)
T 3d0k_A 166 FHAVTAANPGWYTLPTFEHRFPEGLDG-V-------GLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHR 237 (304)
T ss_dssp CSEEEEESCSSCCCSSTTSBTTTSSBT-T-------TCCHHHHHHHHHSCCEEEEETTCCCC--CCSCCSHHHHTTCSSH
T ss_pred eEEEEEecCcccccCCccccCccccCC-C-------CCCHHHHHhhhcCCEEEEEeCCCCCccccccccChhhhccCccH
Confidence 88888655 554422111000000000 0 01222223334689999999999874100
Q ss_pred hHHHHHHHHHHH----hCCCc--EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 848 TMQSDRFFNALK----GHGAL--CRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 848 ~~~~~~~~~~l~----~~g~~--~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
...+.++++.++ ..+.+ ++++++||++|.+ ......+.+||....
T Consensus 238 ~~~~~~~~~~l~~~a~~~g~~~~~~~~~~pg~gH~~------~~~~~~~~~~~~~~~ 288 (304)
T 3d0k_A 238 YARARHYYEAGQRAAAQRGLPFGWQLQVVPGIGHDG------QAMSQVCASLWFDGR 288 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEEEETTCCSCH------HHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEEeCCCCCch------HHHHHHHHHHHhhhh
Confidence 244667777776 56776 8999999999987 244567788876543
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-16 Score=160.00 Aligned_cols=199 Identities=15% Similarity=0.096 Sum_probs=138.2
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccch--HHHHHHHcCcEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST--SVLLWLARGFAI 715 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~G~~V 715 (953)
..+...+. .+|.++++++|.|.+ +.|+||++||+.... ..+ .. ....|+++||.|
T Consensus 3 ~~~~~~~~-~~g~~l~~~~~~~~~-------~~~~vv~~hG~~~~~-----------~~~----~~~~~~~~l~~~G~~v 59 (207)
T 3bdi_A 3 ALQEEFID-VNGTRVFQRKMVTDS-------NRRSIALFHGYSFTS-----------MDW----DKADLFNNYSKIGYNV 59 (207)
T ss_dssp CCEEEEEE-ETTEEEEEEEECCTT-------CCEEEEEECCTTCCG-----------GGG----GGGTHHHHHHTTTEEE
T ss_pred cceeEEEe-eCCcEEEEEEEeccC-------CCCeEEEECCCCCCc-----------ccc----chHHHHHHHHhCCCeE
Confidence 33444444 488999999999864 268999999964211 111 23 567788999999
Q ss_pred EEcCCCCCCCCCCh---hhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEccc
Q 002209 716 LGGPTTPIIGEGDE---EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (953)
Q Consensus 716 ~~~~~~~~~G~G~~---~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (953)
+.+++ +|+|.+ ....... ..+.++.+.+..+.+. .+.++++++|||+||.+++.++.++|++++++|+++|
T Consensus 60 ~~~d~---~g~g~s~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~ 133 (207)
T 3bdi_A 60 YAPDY---PGFGRSASSEKYGIDR-GDLKHAAEFIRDYLKA--NGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAP 133 (207)
T ss_dssp EEECC---TTSTTSCCCTTTCCTT-CCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred EEEcC---CcccccCcccCCCCCc-chHHHHHHHHHHHHHH--cCCCceEEEEECccHHHHHHHHHhCchhheEEEEeCC
Confidence 99655 466665 3321100 0233333444444433 2346999999999999999999999999999999988
Q ss_pred CCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC
Q 002209 793 AYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (953)
Q Consensus 793 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 872 (953)
.... . + ...+.++++|+|+++|++|..++ +..+.++++.+. +++++++++
T Consensus 134 ~~~~---~--~-------------------~~~~~~~~~p~l~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~ 183 (207)
T 3bdi_A 134 AWVE---S--L-------------------KGDMKKIRQKTLLVWGSKDHVVP--IALSKEYASIIS----GSRLEIVEG 183 (207)
T ss_dssp CSCG---G--G-------------------HHHHTTCCSCEEEEEETTCTTTT--HHHHHHHHHHST----TCEEEEETT
T ss_pred cccc---c--h-------------------hHHHhhccCCEEEEEECCCCccc--hHHHHHHHHhcC----CceEEEeCC
Confidence 6211 0 0 12345678999999999999998 888888887773 358999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHH
Q 002209 873 ESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 873 ~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
++|.+. .+....+.+.+.+||++
T Consensus 184 ~~H~~~-~~~~~~~~~~i~~fl~~ 206 (207)
T 3bdi_A 184 SGHPVY-IEKPEEFVRITVDFLRN 206 (207)
T ss_dssp CCSCHH-HHSHHHHHHHHHHHHHT
T ss_pred CCCCcc-ccCHHHHHHHHHHHHhh
Confidence 999863 34456677778888764
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=172.94 Aligned_cols=238 Identities=13% Similarity=0.079 Sum_probs=154.1
Q ss_pred ceEEEEEEcC-CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 638 QKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 638 ~~~~~~~~~~-dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
.++.+++.+. .|.++.++ +.|. + .++|+||++||++... ....|... ......+++.||+|+
T Consensus 8 ~v~~~~~~S~~~~~~i~v~-~~p~-~-----~~~p~vvllHG~~~~~---------~~~~w~~~-~~~~~~~~~~~~~vv 70 (304)
T 1sfr_A 8 PVEYLQVPSPSMGRDIKVQ-FQSG-G-----ANSPALYLLDGLRAQD---------DFSGWDIN-TPAFEWYDQSGLSVV 70 (304)
T ss_dssp CCEEEEEEETTTTEEEEEE-EECC-S-----TTBCEEEEECCTTCCS---------SSCHHHHH-CCHHHHHTTSSCEEE
T ss_pred eEEEEEEECccCCCceEEE-ECCC-C-----CCCCEEEEeCCCCCCC---------CcchhhcC-CCHHHHHhcCCeEEE
Confidence 4677778765 46677766 4443 2 2489999999963100 00111100 012345667899999
Q ss_pred EcCCCCCCCCCChhh---------hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEE
Q 002209 717 GGPTTPIIGEGDEEA---------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~---------~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (953)
+++..+..++..... ...+.....+|+... +.++..+++++++|+|+||||++|+.++.++|++|+++
T Consensus 71 ~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~---i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~ 147 (304)
T 1sfr_A 71 MPVGGQSSFYSDWYQPACGKAGCQTYKWETFLTSELPGW---LQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYA 147 (304)
T ss_dssp EECCCTTCTTCBCSSCEEETTEEECCBHHHHHHTHHHHH---HHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEE
T ss_pred EECCCCCccccccCCccccccccccccHHHHHHHHHHHH---HHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEE
Confidence 988754333321100 112222223444444 44433467789999999999999999999999999999
Q ss_pred EEcccCCCCCCCCcCc------ccc----cchhhh--hHHHHHhcCcccccCCC---CCcEEEEEeCCCC----------
Q 002209 788 IARSGAYNRTLTPFGF------QNE----DRTLWE--ATSTYVEMSPFMSANKL---KKPILLVHGEEDN---------- 842 (953)
Q Consensus 788 v~~~~~~d~~~~~~~~------~~~----~~~~~~--~~~~~~~~sp~~~~~~i---~~P~Li~~G~~D~---------- 842 (953)
|+++|.++.....+.. ... ....|. ....+...+|...+.++ +.|+|++||+.|.
T Consensus 148 v~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~l~~~~~pi~l~~G~~D~~~~~~~~~~~ 227 (304)
T 1sfr_A 148 GAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPA 227 (304)
T ss_dssp EEESCCSCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHH
T ss_pred EEECCccCccccchhhhhhHhhhhccccchHHhcCCcchhhhHhcCHHHHHHHhhhcCCeEEEEecCCCCcccccccccc
Confidence 9999987643211000 000 000010 12245566777666555 5899999999998
Q ss_pred ----CCCCchHHHHHHHHHHHhCC-CcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccC
Q 002209 843 ----NSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 843 ----~v~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (953)
.++ ..++++++++|++.| +++++.+|++++|.+. .+...+..+++||.++|..
T Consensus 228 ~~~e~~~--~~~~~~~~~~L~~~G~~~v~~~~~~~g~H~~~---~w~~~l~~~l~~l~~~l~~ 285 (304)
T 1sfr_A 228 KFLEGFV--RTSNIKFQDAYNAGGGHNGVFDFPDSGTHSWE---YWGAQLNAMKPDLQRALGA 285 (304)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHTC
T ss_pred chhHHHH--HHHHHHHHHHHHhCCCCceEEEecCCCccCHH---HHHHHHHHHHHHHHHhcCC
Confidence 556 889999999999999 9999999977799752 3455667889999999864
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-17 Score=190.73 Aligned_cols=237 Identities=21% Similarity=0.198 Sum_probs=162.1
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHH-HHHHHcCcEEEE
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV-LLWLARGFAILG 717 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la~~G~~V~~ 717 (953)
.+.++++..||..|.+.+|.|++ .+++|+||+.||...... .. ..+. ..+ ..|+++||+|+.
T Consensus 9 ~~~v~i~~~DG~~L~~~~~~P~~-----~~~~P~vv~~~~~g~~~~-----~~---~~y~----~~~~~~la~~Gy~vv~ 71 (587)
T 3i2k_A 9 ASNVMVPMRDGVRLAVDLYRPDA-----DGPVPVLLVRNPYDKFDV-----FA---WSTQ----STNWLEFVRDGYAVVI 71 (587)
T ss_dssp EEEEEEECTTSCEEEEEEEEECC-----SSCEEEEEEEESSCTTCH-----HH---HHTT----TCCTHHHHHTTCEEEE
T ss_pred EEEEEEECCCCCEEEEEEEECCC-----CCCeeEEEEECCcCCCcc-----cc---ccch----hhHHHHHHHCCCEEEE
Confidence 46789999999999999999975 235999999987321100 00 0010 013 688999999999
Q ss_pred cCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC-CCC
Q 002209 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA-YNR 796 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~-~d~ 796 (953)
+|+ +|.|.+.+....+....+|+.++++||.++++.+ .+|+++|+||||++++.+++..|+.++|+|+.++. .|.
T Consensus 72 ~D~---RG~G~S~g~~~~~~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~ 147 (587)
T 3i2k_A 72 QDT---RGLFASEGEFVPHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLY 147 (587)
T ss_dssp EEC---TTSTTCCSCCCTTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTC
T ss_pred EcC---CCCCCCCCccccccchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCccccc
Confidence 555 5556554432223568999999999999887766 79999999999999999999988999999999988 664
Q ss_pred CCC---CcCcccc-cchhhhh-----------------------------------------------------------
Q 002209 797 TLT---PFGFQNE-DRTLWEA----------------------------------------------------------- 813 (953)
Q Consensus 797 ~~~---~~~~~~~-~~~~~~~----------------------------------------------------------- 813 (953)
... .-+.... ....|..
T Consensus 148 ~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (587)
T 3i2k_A 148 RAPWYGPGGALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVD 227 (587)
T ss_dssp CCCCSCTTCCCCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHTCHHHHHTCSSTTCCHHHHHHCTHHHHTTTT
T ss_pred ccceeecCCccccchHHHHHHHhhhhcccccccCCccchhhhhhhhhhhhHHHHHHhcCCcccchhccccchhHHhhhhc
Confidence 321 0000000 0000100
Q ss_pred ----HHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC---------c
Q 002209 814 ----TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA---------R 880 (953)
Q Consensus 814 ----~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~---------~ 880 (953)
...|...++...+++|++|+|+++|..|..+ ..+.++|++++..+. .++++-|. .|.... .
T Consensus 228 ~~~~d~yw~~~s~~~~l~~I~vPvL~v~Gw~D~~~----~~~~~~~~~l~~~~~-~~L~iGPw-~H~~~~~~~g~~~~g~ 301 (587)
T 3i2k_A 228 HPDNDESWQSISLFERLGGLATPALITAGWYDGFV----GESLRTFVAVKDNAD-ARLVVGPW-SHSNLTGRNADRKFGI 301 (587)
T ss_dssp CCSCCHHHHTTCCHHHHTTCCCCEEEEEEEECTTH----HHHHHHHHHHTTTSC-EEEEEEEE-ETTBCSSEETTEECCG
T ss_pred CCCCChHHhcCChhhhhccCCCCEEEEccCCCccc----hHHHHHHHHHhhcCC-CEEEECCc-cccCccccCCCcccCC
Confidence 1123334555677899999999999999764 457889999987765 46777665 465311 1
Q ss_pred cc---HHHHHHHHHHHHHHhccCCC
Q 002209 881 ES---IMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 881 ~~---~~~~~~~i~~fl~~~l~~~~ 902 (953)
.. ..+..+.+++||++||+..+
T Consensus 302 ~~~~~~~~~~~~~~~wFD~~Lkg~~ 326 (587)
T 3i2k_A 302 AATYPIQEATTMHKAFFDRHLRGET 326 (587)
T ss_dssp GGSCCHHHHHHHHHHHHHHHHSCCT
T ss_pred ccccccchhhHHHHHHHHHHhcCCC
Confidence 11 11334889999999998654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-15 Score=171.41 Aligned_cols=278 Identities=9% Similarity=0.012 Sum_probs=173.5
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
...++|||||++|+....+ +.|++|++.. ... ...+.....
T Consensus 59 ~~~~~~s~~g~~l~~~~~d---------------------------------~~v~i~d~~~----~~~--~~~~~~~~~ 99 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLD---------------------------------GHDFLFNTII----RDG--SKMLKRADY 99 (420)
T ss_dssp CTTCEEEEEETTEEEEEET---------------------------------TEEEEEECCS----EET--TTTSCSCCE
T ss_pred ccceeeeecCCeEEEEEcC---------------------------------CcEEEEEecc----cce--eeEEecCCc
Confidence 4578999999999998875 3679999843 111 111222234
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
.....|+|||+.|+.... ...|.++++++++........... +..++|+|||+.|+...
T Consensus 100 ~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~s-------- 158 (420)
T 3vl1_A 100 TAVDTAKLQMRRFILGTT---------EGDIKVLDSNFNLQREIDQAHVSE----ITKLKFFPSGEALISSS-------- 158 (420)
T ss_dssp EEEEEECSSSCEEEEEET---------TSCEEEECTTSCEEEEETTSSSSC----EEEEEECTTSSEEEEEE--------
T ss_pred eEEEEEecCCCEEEEEEC---------CCCEEEEeCCCcceeeecccccCc----cEEEEECCCCCEEEEEe--------
Confidence 555679999999998652 557888899888776654333222 77999999999888661
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCC-CcccccccCCCCcEEE
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYIL 347 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDG~~l~ 347 (953)
..+.|.++|+ +++ ...+... ..+..++|+|||+.|+
T Consensus 159 -----------------------------------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 197 (420)
T 3vl1_A 159 -----------------------------------------QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197 (420)
T ss_dssp -----------------------------------------TTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEE
T ss_pred -----------------------------------------CCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEE
Confidence 2246778888 664 4445444 7788999999999999
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccC--Ccc---------ccccccCccceeeccCCCCceE
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDI--PIA---------FNSVRKGMRSINWRSDKPSTLY 415 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~--p~~---------~~~~~~~~~~~~wspDg~~i~~ 415 (953)
..+.+. .|.+||+..+... .+......... ... .......+..++|+|||+.++.
T Consensus 198 s~~~d~-------------~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 264 (420)
T 3vl1_A 198 SASLDG-------------TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 264 (420)
T ss_dssp EEETTS-------------CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE
T ss_pred EEcCCC-------------cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE
Confidence 877443 8999999865443 33322111000 000 0001234567889999987766
Q ss_pred EEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe-ecccccCCeeeccCCc-eEEEEEecccCceEEEEEcCCCCCC
Q 002209 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDDSL-ALVYESWYKTRRTRTWVISPGSKDV 493 (953)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~-~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~~~~ 493 (953)
. +..+.|.+||+ .++.....+. .....+..++|+|+|+ .|+....++ .|+++|+.++..
T Consensus 265 ~-------------~~dg~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg----~i~vwd~~~~~~ 325 (420)
T 3vl1_A 265 G-------------HVSGVITVHNV--FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENG----MLAQWDLRSPEC 325 (420)
T ss_dssp E-------------ETTSCEEEEET--TTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTS----EEEEEETTCTTS
T ss_pred E-------------cCCCeEEEEEC--CCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCC----eEEEEEcCCCcC
Confidence 5 44567999996 2322223332 2345677899999999 555554332 577777776522
Q ss_pred CcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 494 APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
....+.......+. ..++++|++|+...
T Consensus 326 ~~~~~~~~~~~~v~-------~~~~~~~~~l~s~~ 353 (420)
T 3vl1_A 326 PVGEFLINEGTPIN-------NVYFAAGALFVSSG 353 (420)
T ss_dssp CSEEEEESTTSCEE-------EEEEETTEEEEEET
T ss_pred chhhhhccCCCCce-------EEEeCCCCEEEEec
Confidence 22333322222222 23567887766654
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-16 Score=166.40 Aligned_cols=202 Identities=15% Similarity=0.137 Sum_probs=142.1
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh--hhhHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAAV 747 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~~~ 747 (953)
.|+||++||..... .. .......|+++||.|+. .+.+|+|.+... .......++|+.+++
T Consensus 40 ~~~vv~~HG~~~~~-----------~~----~~~~~~~l~~~G~~v~~---~d~~G~G~s~~~~~~~~~~~~~~d~~~~i 101 (270)
T 3rm3_A 40 PVGVLLVHGFTGTP-----------HS----MRPLAEAYAKAGYTVCL---PRLKGHGTHYEDMERTTFHDWVASVEEGY 101 (270)
T ss_dssp SEEEEEECCTTCCG-----------GG----THHHHHHHHHTTCEEEE---CCCTTCSSCHHHHHTCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCh-----------hH----HHHHHHHHHHCCCEEEE---eCCCCCCCCccccccCCHHHHHHHHHHHH
Confidence 58999999963211 11 12456678889999999 555678877543 234667789999999
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC-----------Cc------Cccc-----
Q 002209 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-----------PF------GFQN----- 805 (953)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~-----------~~------~~~~----- 805 (953)
+++..+ .++++|+|||+||.+++.++.++|+ ++++|+++|..+.... .+ .+..
T Consensus 102 ~~l~~~----~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (270)
T 3rm3_A 102 GWLKQR----CQTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKE 176 (270)
T ss_dssp HHHHTT----CSEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEEECCCCCCSCTTCCC
T ss_pred HHHHhh----CCcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHHHHhCccccccchHh
Confidence 999765 4699999999999999999999999 9999999986542100 00 0000
Q ss_pred --ccchhhhhHHHHHh--cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc
Q 002209 806 --EDRTLWEATSTYVE--MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (953)
Q Consensus 806 --~~~~~~~~~~~~~~--~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (953)
...........+.. ......+.++++|+|+++|++|..+| +..+.++++.++. .+++++++|+++|.+....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~ 252 (270)
T 3rm3_A 177 LAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVP--PGNADIIFQGISS--TEKEIVRLRNSYHVATLDY 252 (270)
T ss_dssp CCCSEEEHHHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSC--TTHHHHHHHHSCC--SSEEEEEESSCCSCGGGST
T ss_pred hcccccChhHHHHHHHHHHHHHhhhhhcCCCEEEEECCCCcccC--HHHHHHHHHhcCC--CcceEEEeCCCCcccccCc
Confidence 00000000000000 01224567789999999999999998 8999888887754 3579999999999986444
Q ss_pred cHHHHHHHHHHHHHHhc
Q 002209 882 SIMHVLWETDRWLQKYC 898 (953)
Q Consensus 882 ~~~~~~~~i~~fl~~~l 898 (953)
....+.+.+.+||+++.
T Consensus 253 ~~~~~~~~i~~fl~~~~ 269 (270)
T 3rm3_A 253 DQPMIIERSLEFFAKHA 269 (270)
T ss_dssp THHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhcC
Confidence 45788999999999864
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-17 Score=178.03 Aligned_cols=200 Identities=13% Similarity=0.082 Sum_probs=135.1
Q ss_pred CCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHH----HHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHH
Q 002209 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW----LARGFAILGGPTTPIIGEGDEEANDRFVEQLVACA 743 (953)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----a~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~ 743 (953)
++.|+||++|||.+..+.. . . .........| +++||.|+.+++++. +.. .....+.|+
T Consensus 39 ~~~p~vv~lHGgg~~~g~~------~---~-~~~~~~~~~L~~~a~~~g~~vi~~d~r~~---~~~-----~~~~~~~d~ 100 (273)
T 1vkh_A 39 NTREAVIYIHGGAWNDPEN------T---P-NDFNQLANTIKSMDTESTVCQYSIEYRLS---PEI-----TNPRNLYDA 100 (273)
T ss_dssp TCCEEEEEECCSTTTCTTC------C---G-GGGHHHHHHHHHHCTTCCEEEEEECCCCT---TTS-----CTTHHHHHH
T ss_pred CCCeEEEEECCCcccCCcC------C---h-HHHHHHHHHHhhhhccCCcEEEEeecccC---CCC-----CCCcHHHHH
Confidence 3589999999975332100 0 0 0112334455 478999999777532 221 123567888
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-----------------CCcccEEEEcccCCCCCCCCcCccc-
Q 002209 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-----------------PHLFCCGIARSGAYNRTLTPFGFQN- 805 (953)
Q Consensus 744 ~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-----------------p~~~~a~v~~~~~~d~~~~~~~~~~- 805 (953)
.++++++.+. ++.++++|+||||||.+++.++.++ |++++++|+++|+++..........
T Consensus 101 ~~~~~~l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~ 178 (273)
T 1vkh_A 101 VSNITRLVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEY 178 (273)
T ss_dssp HHHHHHHHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGG
T ss_pred HHHHHHHHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhcccH
Confidence 9999999876 4678999999999999999999885 6789999999987653111000000
Q ss_pred ---------ccchhhh-hHHHHHhcCcc--cccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002209 806 ---------EDRTLWE-ATSTYVEMSPF--MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (953)
Q Consensus 806 ---------~~~~~~~-~~~~~~~~sp~--~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (953)
.....|. ... ..++. .....+++|+|++||++|..|| +++++++++.++..+.++++++++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~~~l~~~~~~~~~~~~~~~ 253 (273)
T 1vkh_A 179 DCFTRLAFPDGIQMYEEEPS---RVMPYVKKALSRFSIDMHLVHSYSDELLT--LRQTNCLISCLQDYQLSFKLYLDDLG 253 (273)
T ss_dssp HHHHHHHCTTCGGGCCCCHH---HHHHHHHHHHHHHTCEEEEEEETTCSSCC--THHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHHHHhcccccchhhccc---ccChhhhhcccccCCCEEEEecCCcCCCC--hHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 0000011 100 01110 0112267899999999999998 99999999999999999999999999
Q ss_pred CccCCCcccHHHHHHHHHHHH
Q 002209 874 SHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 874 ~H~~~~~~~~~~~~~~i~~fl 894 (953)
+|.+. .+. ..+.+.+.+||
T Consensus 254 gH~~~-~~~-~~~~~~i~~fl 272 (273)
T 1vkh_A 254 LHNDV-YKN-GKVAKYIFDNI 272 (273)
T ss_dssp SGGGG-GGC-HHHHHHHHHTC
T ss_pred ccccc-ccC-hHHHHHHHHHc
Confidence 99874 333 67777777775
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-16 Score=161.70 Aligned_cols=196 Identities=14% Similarity=0.101 Sum_probs=138.1
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCC
Q 002209 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (953)
Q Consensus 648 dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G 727 (953)
++..+...++.|.. .+.|+||++||+... ...| ......|+ .||.|+.++..+..+.|
T Consensus 14 ~~~~l~~~~~~~~~------~~~p~vv~lHG~g~~-----------~~~~----~~~~~~l~-~~~~vv~~d~~~~~~~g 71 (223)
T 3b5e_A 14 TDLAFPYRLLGAGK------ESRECLFLLHGSGVD-----------ETTL----VPLARRIA-PTATLVAARGRIPQEDG 71 (223)
T ss_dssp CSSSSCEEEESTTS------SCCCEEEEECCTTBC-----------TTTT----HHHHHHHC-TTSEEEEECCSEEETTE
T ss_pred cCCCceEEEeCCCC------CCCCEEEEEecCCCC-----------HHHH----HHHHHhcC-CCceEEEeCCCCCcCCc
Confidence 34456655554432 124899999996311 1111 12344454 49999997753211101
Q ss_pred Chh--------hhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC
Q 002209 728 DEE--------ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (953)
Q Consensus 728 ~~~--------~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~ 799 (953)
.++ ...........|+.++++++.++..+|+++++|+|||+||.+++.++.++|++++++|+++|......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~- 150 (223)
T 3b5e_A 72 FRWFERIDPTRFEQKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH- 150 (223)
T ss_dssp EESSCEEETTEECHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSS-
T ss_pred cccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCccc-
Confidence 111 11223456678888888888777567889999999999999999999999999999999998754210
Q ss_pred CcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC
Q 002209 800 PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA 879 (953)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 879 (953)
......+++|+|++||++|..|| ++.++ +++.++..+.++++++++ ++|.+.
T Consensus 151 -----------------------~~~~~~~~~P~li~~G~~D~~v~--~~~~~-~~~~l~~~g~~~~~~~~~-~gH~~~- 202 (223)
T 3b5e_A 151 -----------------------VPATDLAGIRTLIIAGAADETYG--PFVPA-LVTLLSRHGAEVDARIIP-SGHDIG- 202 (223)
T ss_dssp -----------------------CCCCCCTTCEEEEEEETTCTTTG--GGHHH-HHHHHHHTTCEEEEEEES-CCSCCC-
T ss_pred -----------------------cccccccCCCEEEEeCCCCCcCC--HHHHH-HHHHHHHCCCceEEEEec-CCCCcC-
Confidence 01223467899999999999998 99999 999999999999999999 899884
Q ss_pred cccHHHHHHHHHHHHHHhc
Q 002209 880 RESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 880 ~~~~~~~~~~i~~fl~~~l 898 (953)
.+..+.+.+||++.+
T Consensus 203 ----~~~~~~i~~~l~~~~ 217 (223)
T 3b5e_A 203 ----DPDAAIVRQWLAGPI 217 (223)
T ss_dssp ----HHHHHHHHHHHHCC-
T ss_pred ----HHHHHHHHHHHHhhh
Confidence 233567888987654
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=166.58 Aligned_cols=180 Identities=17% Similarity=0.108 Sum_probs=130.3
Q ss_pred CccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhh---------hhhhHHHH
Q 002209 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA---------NDRFVEQL 739 (953)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~---------~~~~~~~~ 739 (953)
+.|+||++||+.... ..| ......|+ .+|.|+.++. +..|+|.+.. ........
T Consensus 61 ~~p~vv~~HG~~~~~-----------~~~----~~~~~~l~-~~~~v~~~~~-d~~g~g~s~~~~~~~~~~~~~~~~~~~ 123 (251)
T 2r8b_A 61 GAPLFVLLHGTGGDE-----------NQF----FDFGARLL-PQATILSPVG-DVSEHGAARFFRRTGEGVYDMVDLERA 123 (251)
T ss_dssp TSCEEEEECCTTCCH-----------HHH----HHHHHHHS-TTSEEEEECC-SEEETTEEESSCBCGGGCBCHHHHHHH
T ss_pred CCcEEEEEeCCCCCH-----------hHH----HHHHHhcC-CCceEEEecC-CcCCCCCcccccCCCCCcCCHHHHHHH
Confidence 479999999963110 001 12233344 4699999743 4455554321 11224455
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHh
Q 002209 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819 (953)
Q Consensus 740 ~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 819 (953)
+.|+.++++++.++. +.++++|+||||||++++.++.++|++++++|+++|..+...
T Consensus 124 ~~~~~~~l~~~~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~--------------------- 180 (251)
T 2r8b_A 124 TGKMADFIKANREHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP--------------------- 180 (251)
T ss_dssp HHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC---------------------
T ss_pred HHHHHHHHHHHHhcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc---------------------
Confidence 788888888887654 678999999999999999999999999999999998754321
Q ss_pred cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 820 ~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
......+++|+|++||++|..++ ++.+.+++++++..+.++++ .+++++|.+. .+..+.+.+||.++++
T Consensus 181 ---~~~~~~~~~P~li~~g~~D~~~~--~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~l~ 249 (251)
T 2r8b_A 181 ---KISPAKPTRRVLITAGERDPICP--VQLTKALEESLKAQGGTVET-VWHPGGHEIR-----SGEIDAVRGFLAAYGG 249 (251)
T ss_dssp ---CCCCCCTTCEEEEEEETTCTTSC--HHHHHHHHHHHHHHSSEEEE-EEESSCSSCC-----HHHHHHHHHHHGGGC-
T ss_pred ---cccccccCCcEEEeccCCCccCC--HHHHHHHHHHHHHcCCeEEE-EecCCCCccC-----HHHHHHHHHHHHHhcC
Confidence 11223467899999999999998 99999999999987777777 5666799873 3346788999998874
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-15 Score=169.28 Aligned_cols=274 Identities=8% Similarity=0.041 Sum_probs=179.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++|+....+ +.|.+|++.+ + .....+.. ...
T Consensus 34 ~v~~~~~s~~~~~l~~~~~d---------------------------------g~i~vwd~~~-~--~~~~~~~~--h~~ 75 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKD---------------------------------SSASVWYSLN-G--ERLGTLDG--HTG 75 (369)
T ss_dssp CEEEEEECTTSCEEEEEESS---------------------------------SCEEEEETTT-C--CEEEEECC--CSS
T ss_pred eEEEEEEcCCCCEEEEEeCC---------------------------------CEEEEEeCCC-c--hhhhhhhh--cCC
Confidence 56788999999999988764 3679999853 2 22333432 234
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..+.|+|||+.|+.... ...|.++|+.+++.......... +..+.|+|||+.|++......
T Consensus 76 ~v~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~~~~--- 138 (369)
T 3zwl_B 76 TIWSIDVDCFTKYCVTGSA---------DYSIKLWDVSNGQCVATWKSPVP-----VKRVEFSPCGNYFLAILDNVM--- 138 (369)
T ss_dssp CEEEEEECTTSSEEEEEET---------TTEEEEEETTTCCEEEEEECSSC-----EEEEEECTTSSEEEEEECCBT---
T ss_pred cEEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCcEEEEeecCCC-----eEEEEEccCCCEEEEecCCcc---
Confidence 6889999999999988652 56899999998887655543332 778999999999987722100
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC------------ceeEeCCC---Cc
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG------------TVKEIGPP---AV 333 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g------------~~~~l~~~---~~ 333 (953)
. ..+.|.++++ .+ ....+... ..
T Consensus 139 --------------------------------~---------~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 139 --------------------------------K---------NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp --------------------------------T---------BCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred --------------------------------C---------CCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 0 1134445554 22 11112111 26
Q ss_pred ccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ce-EEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 334 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
+..++|+|||+.|+....+ +.|.+||+.. .. ...+..+. ..+..++|+|||+
T Consensus 178 ~~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~ 231 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHKD-------------GKISKYDVSNNYEYVDSIDLHE-------------KSISDMQFSPDLT 231 (369)
T ss_dssp EEEEEECGGGCEEEEEETT-------------SEEEEEETTTTTEEEEEEECCS-------------SCEEEEEECTTSS
T ss_pred eeEEEEcCCCCEEEEEcCC-------------CEEEEEECCCCcEeEEEEecCC-------------CceeEEEECCCCC
Confidence 7889999999999887743 3899999985 33 33333321 3346799999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccC----------ce
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR----------RT 481 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~----------~~ 481 (953)
.++.. +..+.+.+||+ ..++..........+..+.|+|+|+.+++....+.. ..
T Consensus 232 ~l~~~-------------~~d~~i~v~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 295 (369)
T 3zwl_B 232 YFITS-------------SRDTNSFLVDV---STLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKF 295 (369)
T ss_dssp EEEEE-------------ETTSEEEEEET---TTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------C
T ss_pred EEEEe-------------cCCceEEEEEC---CCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcc
Confidence 77665 44568999996 444444444456667789999999999988754421 11
Q ss_pred EEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 482 RTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 482 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
.+.+++..++ +...........+.. +.|+|||++|+....
T Consensus 296 ~i~~~d~~~~--~~~~~~~~~~~~v~~------~~~s~~~~~l~s~~~ 335 (369)
T 3zwl_B 296 EARFYHKIFE--EEIGRVQGHFGPLNT------VAISPQGTSYASGGE 335 (369)
T ss_dssp EEEEEETTTC--CEEEEEECCSSCEEE------EEECTTSSEEEEEET
T ss_pred eeEEEecCCC--cchhheecccCcEEE------EEECCCCCEEEEEcC
Confidence 4666666664 333333333333333 789999999887763
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=174.79 Aligned_cols=285 Identities=10% Similarity=0.043 Sum_probs=163.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++||..+.+ .. ...++.|++|+..+ +...............
T Consensus 44 ~V~~v~fSpDG~~las~s~d-----------------------~~----~~wd~~v~~~~~~~-~~~~~~~~~~~~~~~~ 95 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSL-----------------------SS----RTWGGSIWVFKDPE-GAPNESLCTAGVQTEA 95 (357)
T ss_dssp EEEEEEECSSSCEEEEEECS-----------------------SS----SSCCEEEEEESSCC----CGGGCSEEEECSS
T ss_pred CEEEEEECCCCCEEEEEcCC-----------------------CC----ccccCeEEEEECCC-CCcceeEecccCCCCC
Confidence 46789999999999998764 10 11124688988743 2211111111111223
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+...+|+||++.|+- . . ...|.++|+.+++...+...........+..++|+|||+.|+...
T Consensus 96 ~V~~~~~s~d~~~l~~-s-------~--dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs------- 158 (357)
T 4g56_B 96 GVTDVAWVSEKGILVA-S-------D--SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG------- 158 (357)
T ss_dssp CEEEEEEETTTEEEEE-E-------T--TSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE-------
T ss_pred CEEEEEEcCCCCEEEE-E-------C--CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe-------
Confidence 5889999999975543 2 1 345777787776543322111111122377899999999998661
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeCCC-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDG~~l 346 (953)
..+.|.++|+ +++.. .+... ..+..++|+|+++.+
T Consensus 159 ------------------------------------------~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 159 ------------------------------------------KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp ------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred ------------------------------------------CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence 2245667788 77543 34433 678889999999755
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (953)
+++... .+.|.+||+..++........ .....+..++|+||+..++...
T Consensus 197 ~~s~~~------------dg~v~~wd~~~~~~~~~~~~~----------~~~~~v~~v~~sp~~~~~la~g--------- 245 (357)
T 4g56_B 197 FLSCGE------------DGRILLWDTRKPKPATRIDFC----------ASDTIPTSVTWHPEKDDTFACG--------- 245 (357)
T ss_dssp EEEEET------------TSCEEECCTTSSSCBCBCCCT----------TCCSCEEEEEECTTSTTEEEEE---------
T ss_pred eeeecc------------CCceEEEECCCCceeeeeeec----------cccccccchhhhhcccceEEEe---------
Confidence 444422 238999999754432211111 1112345789999987655441
Q ss_pred cccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccc
Q 002209 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDV 506 (953)
Q Consensus 427 ~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 506 (953)
+....|.+||+ .++.....+......+..++|||||+.++++...++ .|+++|+.++ +.... ......+
T Consensus 246 ---~~d~~i~~wd~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~---~i~iwd~~~~--~~~~~-~~H~~~V 314 (357)
T 4g56_B 246 ---DETGNVSLVNI--KNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDC---TVAVLDADFS--EVFRD-LSHRDFV 314 (357)
T ss_dssp ---ESSSCEEEEES--SCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTS---CEEEECTTSC--EEEEE-CCCSSCE
T ss_pred ---ecccceeEEEC--CCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCC---EEEEEECCCC--cEeEE-CCCCCCE
Confidence 33457889996 333344556666677888999999865444333332 3566677764 22222 2233333
Q ss_pred cCCCCCCCeEecc-CCCEEEEEee
Q 002209 507 YSDPGSPMMRRTS-TGTYVIAKIK 529 (953)
Q Consensus 507 ~~~~~~p~~~~Sp-DG~~l~~~~~ 529 (953)
.. ++||| ||+.|+....
T Consensus 315 ~~------vafsP~d~~~l~s~s~ 332 (357)
T 4g56_B 315 TG------VAWSPLDHSKFTTVGW 332 (357)
T ss_dssp EE------EEECSSSTTEEEEEET
T ss_pred EE------EEEeCCCCCEEEEEcC
Confidence 33 88998 8888877653
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-15 Score=170.11 Aligned_cols=283 Identities=11% Similarity=0.139 Sum_probs=176.5
Q ss_pred CCCCCCceecCCCC-EEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEc----cCCCCC----Cc
Q 002209 108 APPLPALSFSPQRD-KILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQL----FPDGKL----GQ 178 (953)
Q Consensus 108 ~~~~~~~~~SPDG~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~----~~~g~~----~~ 178 (953)
...+..++|||||+ +||....+ +.|.+|++ .+ +.. ..
T Consensus 45 ~~~v~~~~~s~~~~~~l~~~~~d---------------------------------g~i~iw~~~~~~~~-~~~~~~~~~ 90 (425)
T 1r5m_A 45 LDNIVSSTWNPLDESILAYGEKN---------------------------------SVARLARIVETDQE-GKKYWKLTI 90 (425)
T ss_dssp CSCCSEEEECSSCTTEEEEEETB---------------------------------TEEEEEEEEEC-------CEEEEE
T ss_pred cCceEEEEECCCCCcEEEEecCC---------------------------------ceEEEEEEecccCC-ccccccccc
Confidence 34688999999999 88887764 25788887 43 210 01
Q ss_pred eeeeec-CC-------CCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceE
Q 002209 179 EIEIQG-FP-------DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFV 250 (953)
Q Consensus 179 ~~~l~~-~~-------~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~ 250 (953)
...+.. +. ....+..+.|+|||+.|+.... ...|.+++..+.....+..+... +..+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~i~~~~~~~~~~~~~~~~~-----v~~~~ 156 (425)
T 1r5m_A 91 IAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVE---------NGELRLWNKTGALLNVLNFHRAP-----IVSVK 156 (425)
T ss_dssp EEEEECCCCCC------CBCEEEEEECTTSSEEEEEET---------TSCEEEEETTSCEEEEECCCCSC-----EEEEE
T ss_pred cccccccccccccccCCCCceEEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCeeeeccCCCcc-----EEEEE
Confidence 222221 10 1236889999999999998652 44677778555555555433332 77899
Q ss_pred EecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-Ee
Q 002209 251 WVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EI 328 (953)
Q Consensus 251 wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l 328 (953)
|+|||+.|++.. ..+.|.++++ +++.. .+
T Consensus 157 ~~~~~~~l~~~~-------------------------------------------------~d~~i~iwd~~~~~~~~~~ 187 (425)
T 1r5m_A 157 WNKDGTHIISMD-------------------------------------------------VENVTILWNVISGTVMQHF 187 (425)
T ss_dssp ECTTSSEEEEEE-------------------------------------------------TTCCEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEe-------------------------------------------------cCCeEEEEECCCCcEEEEe
Confidence 999999888761 1234666676 55432 22
Q ss_pred CCC-Cc---------------ccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCC
Q 002209 329 GPP-AV---------------YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIP 391 (953)
Q Consensus 329 ~~~-~~---------------~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p 391 (953)
... .. +..+.|+|++. ++....+ +.|.+||+..+... .+..+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------g~i~~~d~~~~~~~~~~~~~------- 246 (425)
T 1r5m_A 188 ELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPK-------------GAIFVYQITEKTPTGKLIGH------- 246 (425)
T ss_dssp CCC---------------CCCBSCCEEEETTE-EEEECGG-------------GCEEEEETTCSSCSEEECCC-------
T ss_pred eccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCC-------------CeEEEEEcCCCceeeeeccC-------
Confidence 222 22 78899999976 4444423 38999999864332 22221
Q ss_pred ccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEE
Q 002209 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALV 471 (953)
Q Consensus 392 ~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~ 471 (953)
...+..++|+||++.++.. +..+.+.+|++ ..+.....+..+...+..+.|+||| .|+
T Consensus 247 ------~~~i~~~~~~~~~~~l~~~-------------~~d~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~-~l~ 304 (425)
T 1r5m_A 247 ------HGPISVLEFNDTNKLLLSA-------------SDDGTLRIWHG--GNGNSQNCFYGHSQSIVSASWVGDD-KVI 304 (425)
T ss_dssp ------SSCEEEEEEETTTTEEEEE-------------ETTSCEEEECS--SSBSCSEEECCCSSCEEEEEEETTT-EEE
T ss_pred ------CCceEEEEECCCCCEEEEE-------------cCCCEEEEEEC--CCCccceEecCCCccEEEEEECCCC-EEE
Confidence 1334679999999966655 34567899986 3333445555566677889999999 655
Q ss_pred EEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCC
Q 002209 472 YESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNI 551 (953)
Q Consensus 472 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (953)
....++ .|.++++.++ +...........+.. +.|+|||++|+....+
T Consensus 305 ~~~~d~----~i~i~d~~~~--~~~~~~~~~~~~i~~------~~~s~~~~~l~~~~~d--------------------- 351 (425)
T 1r5m_A 305 SCSMDG----SVRLWSLKQN--TLLALSIVDGVPIFA------GRISQDGQKYAVAFMD--------------------- 351 (425)
T ss_dssp EEETTS----EEEEEETTTT--EEEEEEECTTCCEEE------EEECTTSSEEEEEETT---------------------
T ss_pred EEeCCC----cEEEEECCCC--cEeEecccCCccEEE------EEEcCCCCEEEEEECC---------------------
Confidence 554332 5777777664 333333332222222 7899999998877632
Q ss_pred CeEEEEECCCCc
Q 002209 552 PFLDLFDINTGS 563 (953)
Q Consensus 552 ~~L~~~d~~~~~ 563 (953)
..|++||+.+++
T Consensus 352 g~i~i~~~~~~~ 363 (425)
T 1r5m_A 352 GQVNVYDLKKLN 363 (425)
T ss_dssp SCEEEEECHHHH
T ss_pred CeEEEEECCCCc
Confidence 138888887665
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-16 Score=165.70 Aligned_cols=211 Identities=15% Similarity=0.117 Sum_probs=136.7
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHc----C
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR----G 712 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----G 712 (953)
-..+.++|.+.+| .+.+++|+|+++++++ ++|+|+++||++.....+. ............|+++ +
T Consensus 39 g~~~~~~~~s~~~-~~~~~vy~P~~~~~~~--~~Pvlv~lHG~~~~~~~~~--------~~~~~~~~~~~~l~~~g~~~~ 107 (297)
T 1gkl_A 39 GRIVKETYTGING-TKSLNVYLPYGYDPNK--KYNIFYLMHGGGENENTIF--------SNDVKLQNILDHAIMNGELEP 107 (297)
T ss_dssp CEEEEEEEEETTE-EEEEEEEECTTCCTTS--CCEEEEEECCTTCCTTSTT--------STTTCHHHHHHHHHHTTSSCC
T ss_pred ceEEEEEEEcCCC-EEEEEEEeCCCCCCCC--CCCEEEEECCCCCCcchhh--------cccchHHHHHHHHHHcCCCCC
Confidence 3567888988876 8999999999886543 5999999999753211000 0000012334556666 4
Q ss_pred cEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcC---------CCCCCcEEEEEeChHHHHHHHHHHhCCCc
Q 002209 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---------VAHPSKIAVGGHSYGAFMTANLLAHAPHL 783 (953)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~---------~~d~~~i~l~G~S~GG~~a~~~a~~~p~~ 783 (953)
|+|+++++++..+. ...+....+.|++..++...... ..|+++++|+|+||||++|+.++.++|++
T Consensus 108 ~ivv~pd~~~~~~~-----~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~p~~ 182 (297)
T 1gkl_A 108 LIVVTPTFNGGNCT-----AQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDY 182 (297)
T ss_dssp EEEEECCSCSTTCC-----TTTHHHHHHHTHHHHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTT
T ss_pred EEEEEecCcCCccc-----hHHHHHHHHHHHHHHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhCchh
Confidence 99999887543221 22333444555555444321111 03667899999999999999999999999
Q ss_pred ccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCC-
Q 002209 784 FCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG- 862 (953)
Q Consensus 784 ~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g- 862 (953)
|+++++++|.+.+... ..........+... ..+.....++++.+|+.|.. ..+++++.++|++.+
T Consensus 183 f~~~v~~sg~~~~~~~-------~~~~~~~~~~~~~~---~~~~~~~~~l~~~~G~~D~~----~~~~~~l~~~L~~~g~ 248 (297)
T 1gkl_A 183 VAYFMPLSGDYWYGNS-------PQDKANSIAEAINR---SGLSKREYFVFAATGSEDIA----YANMNPQIEAMKALPH 248 (297)
T ss_dssp CCEEEEESCCCCBSSS-------HHHHHHHHHHHHHH---HTCCTTSCEEEEEEETTCTT----HHHHHHHHHHHHTSTT
T ss_pred hheeeEeccccccCCc-------cchhhhHHHHHHhh---ccCCcCcEEEEEEeCCCccc----chhHHHHHHHHHHcCC
Confidence 9999999997542110 00000011111111 11222345677789999965 567899999999988
Q ss_pred ---------CcEEEEEeCCCCccC
Q 002209 863 ---------ALCRLVILPFESHGY 877 (953)
Q Consensus 863 ---------~~~~~~~~~~~~H~~ 877 (953)
+++++.++||++|.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~g~gH~~ 272 (297)
T 1gkl_A 249 FDYTSDFSKGNFYFLVAPGATHWW 272 (297)
T ss_dssp CCBBSCTTTCCEEEEEETTCCSSH
T ss_pred ccccccccCCceEEEECCCCCcCH
Confidence 599999999999975
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.8e-16 Score=169.21 Aligned_cols=244 Identities=16% Similarity=0.149 Sum_probs=153.8
Q ss_pred CCceEEEEEEcCC--C--cEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-H
Q 002209 636 SLQKELIKYQRKD--G--VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-A 710 (953)
Q Consensus 636 ~~~~~~~~~~~~d--g--~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~ 710 (953)
.....++.|.+.| | ..+.+++++|.+. .++.|+|++.||... ... +.+.............|+ +
T Consensus 40 ~~~~~~i~Y~s~d~~G~~~~~~g~l~~P~~~----~~~~PvV~~~HG~~~--~~~-----~~ps~~~~~~~~~~~~lal~ 108 (377)
T 4ezi_A 40 DLQLYKINYKTQSPDGNLTIASGLVAMPIHP----VGQVGIISYQHGTRF--ERN-----DVPSRNNEKNYIYLAAYGNS 108 (377)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEESSC----SSCEEEEEEECCCCC--STT-----CSGGGCCGGGHHHHHHHTTT
T ss_pred CcEEEEEEEEEECCCCCEEEEEEEEEECCCC----CCCCcEEEEeCCCcC--Ccc-----cCCCcCcccchHHHHHHHHh
Confidence 3456778887765 4 4688999999863 246999999999642 110 111100001123455678 9
Q ss_pred cCcEEEEcCCCCCCCCCChhh---h---hhhHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEeChHHHHHHHHHHhCCC-
Q 002209 711 RGFAILGGPTTPIIGEGDEEA---N---DRFVEQLVACAEAAVEEVVR-RGVAHPSKIAVGGHSYGAFMTANLLAHAPH- 782 (953)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~---~---~~~~~~~~~D~~~~~~~l~~-~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~- 782 (953)
+||+|+.+|++ |+|.+.. . .......+.|.+.++..+.+ .+..+.++++++|||+||+++++++...|+
T Consensus 109 ~Gy~Vv~~D~r---G~G~s~~~~~~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~ 185 (377)
T 4ezi_A 109 AGYMTVMPDYL---GLGDNELTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKE 185 (377)
T ss_dssp TCCEEEEECCT---TSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCC---CCCCCCCCCcccccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhh
Confidence 99999997665 4444422 1 11122334454444444433 343366899999999999999999987543
Q ss_pred ----cccEEEEcccCCCCCCC-------C--c-----C------------ccc-------ccchhhhh--------H---
Q 002209 783 ----LFCCGIARSGAYNRTLT-------P--F-----G------------FQN-------EDRTLWEA--------T--- 814 (953)
Q Consensus 783 ----~~~a~v~~~~~~d~~~~-------~--~-----~------------~~~-------~~~~~~~~--------~--- 814 (953)
.++++++.++++|.... . . + +.. ......+. .
T Consensus 186 ~~~l~l~g~~~~~~p~dl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~yp~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 265 (377)
T 4ezi_A 186 YPDLPVSAVAPGSAPYGWEETMHFVMLEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTLIPELMDGYHAVDEIL 265 (377)
T ss_dssp CTTSCCCEEEEESCCCCHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHCCSSCHHHHBCTTHHHHHHHHTSSCSCHHHHH
T ss_pred CCCCceEEEEecCcccCHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHhccCHHHHhCHHHHHHHHHHhhcccchhhhh
Confidence 58899998887762110 0 0 0 000 00000000 0
Q ss_pred ------------HHHHh-----cCc-cc--------ccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002209 815 ------------STYVE-----MSP-FM--------SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (953)
Q Consensus 815 ------------~~~~~-----~sp-~~--------~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (953)
..+.+ ..| +. .-..++.|+||+||++|.+|| +.++.++++++++.|. ++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~Pvli~hG~~D~~Vp--~~~~~~l~~~l~~~G~-v~~~ 342 (377)
T 4ezi_A 266 QALPQDPLLIFQPKFSNGIISKTDRNTEILKINFNHYDFKPTAPLLLVGTKGDRDVP--YAGAEMAYHSFRKYSD-FVWI 342 (377)
T ss_dssp HHSCSSGGGGBCHHHHHHHHTTCSTTHHHHHHHHCCCCSCCSSCEEEEECTTCSSSC--HHHHHHHHHHHHTTCS-CEEE
T ss_pred hccCCCHHHHhchhhhhhcccccchHHHHHHHHhcccCCCCCCCEEEEecCCCCCCC--HHHHHHHHHHHHhcCC-EEEE
Confidence 00000 111 00 012467899999999999999 9999999999999999 9999
Q ss_pred EeCC--CCccCCCcccHHHHHHHHHHHHHHhccC
Q 002209 869 ILPF--ESHGYAARESIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 869 ~~~~--~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (953)
.+++ .+|... .......+++||+++++.
T Consensus 343 ~~~~~~~~H~~~----~~~~~~~~~~wl~~~~~~ 372 (377)
T 4ezi_A 343 KSVSDALDHVQA----HPFVLKEQVDFFKQFERQ 372 (377)
T ss_dssp EESCSSCCTTTT----HHHHHHHHHHHHHHHHTS
T ss_pred EcCCCCCCccCh----HHHHHHHHHHHHHHhhcc
Confidence 9999 899764 245678899999999864
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-15 Score=182.52 Aligned_cols=273 Identities=14% Similarity=0.104 Sum_probs=177.5
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..++|||||++|||..+.. +++...||++|+++|+..+.+.... . ...++|+ ||+.|+|+.......
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~----G~~~~~i~v~dl~tg~~~~~~~~~~-k----~~~~~Ws-Dg~~l~y~~~~~~~~- 198 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLA----GSDWREIHLMDVESKQPLETPLKDV-K----FSGISWL-GNEGFFYSSYDKPDG- 198 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECS----SCCEEEEEEEETTTCSEEEEEEEEE-E----SCCCEEE-TTTEEEEEESSCCC--
T ss_pred EEEEEEECCCCCEEEEEEecC----CCceEEEEEEECCCCCCCccccCCc-e----eccEEEe-CCCEEEEEEecCccc-
Confidence 566789999999999988643 4556899999999998766532111 0 3478999 999999984332100
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc--eeEeCCC-C----cccccccCC
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGPP-A----VYTSLDPSP 341 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~--~~~l~~~-~----~~~~~~~Sp 341 (953)
..........+||++++ ++. .+.+... . ...++.|||
T Consensus 199 -----------------------------------~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp 243 (693)
T 3iuj_A 199 -----------------------------------SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE 243 (693)
T ss_dssp -----------------------------------------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT
T ss_pred -----------------------------------ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC
Confidence 00000003357999998 553 3455443 3 346789999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCc--eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~--~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~ 419 (953)
||++|++++.... ...+||++|++++ ..+.|+.... ....+ |++||+.++|.++.
T Consensus 244 Dg~~l~~~~~~~~---------~~~~i~~~d~~~~~~~~~~l~~~~~-------------~~~~~-~~~~g~~l~~~t~~ 300 (693)
T 3iuj_A 244 DDRFLLISAANST---------SGNRLYVKDLSQENAPLLTVQGDLD-------------ADVSL-VDNKGSTLYLLTNR 300 (693)
T ss_dssp TSCEEEEEEESSS---------SCCEEEEEETTSTTCCCEEEECSSS-------------SCEEE-EEEETTEEEEEECT
T ss_pred CCCEEEEEEccCC---------CCcEEEEEECCCCCCceEEEeCCCC-------------ceEEE-EeccCCEEEEEECC
Confidence 9999999875431 2348999999755 5566654321 11223 88999998887432
Q ss_pred ccCCCcccccccCCeEEEEecCCCCCCCc---eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcE
Q 002209 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (953)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~d~~~~~g~~~---~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (953)
. .....|+.+++ +++.. +.++....... .|+++|+.|++....+. ..+|++++++++ ..+
T Consensus 301 ~---------~~~~~l~~~d~---~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g-~~~l~~~d~~g~--~~~ 363 (693)
T 3iuj_A 301 D---------APNRRLVTVDA---ANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDA-TARVEQFDYEGK--RVR 363 (693)
T ss_dssp T---------CTTCEEEEEET---TSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETT-EEEEEEECTTSC--EEE
T ss_pred C---------CCCCEEEEEeC---CCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECC-eeEEEEEECCCC--eeE
Confidence 1 23568999996 44443 55655544433 99999999999876653 368999999864 333
Q ss_pred EeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccC
Q 002209 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (953)
Q Consensus 497 ~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~ 571 (953)
.+.-.....+.. +++++|++.|+|...+. . ....||.+|+++++.+.+....
T Consensus 364 ~l~~p~~~~~~~------~~~~~d~~~l~~~~ss~--------------~---tP~~l~~~d~~~g~~~~l~~~~ 415 (693)
T 3iuj_A 364 EVALPGLGSVSG------FNGKHDDPALYFGFENY--------------A---QPPTLYRFEPKSGAISLYRASA 415 (693)
T ss_dssp EECCSSSSEEEE------CCCCTTCSCEEEEEECS--------------S---SCCEEEEECTTTCCEEEEECCC
T ss_pred EeecCCCceEEe------eecCCCCCEEEEEecCC--------------C---CCCEEEEEECCCCeEEEEEeCC
Confidence 332221111111 45788999888886422 1 2345999999999888877654
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=168.86 Aligned_cols=237 Identities=14% Similarity=0.140 Sum_probs=153.6
Q ss_pred CCceEEEEEEcC-CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcE
Q 002209 636 SLQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (953)
Q Consensus 636 ~~~~~~~~~~~~-dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (953)
....+.+++.+. .|.++.++ |+|++ .|+||++||+.... ....|... ......+++.||+
T Consensus 8 ~~~~~~~~~~S~~~~~~~~~~-~~P~~--------~p~vvllHG~~~~~---------~~~~w~~~-~~~~~~~~~~~~~ 68 (280)
T 1r88_A 8 AAPYENLMVPSPSMGRDIPVA-FLAGG--------PHAVYLLDAFNAGP---------DVSNWVTA-GNAMNTLAGKGIS 68 (280)
T ss_dssp CCCCEEEEEEETTTTEEEEEE-EECCS--------SSEEEEECCSSCCS---------SSCHHHHT-SCHHHHHTTSSSE
T ss_pred CCCEEEEEEECcccCCcceEE-EeCCC--------CCEEEEECCCCCCC---------Chhhhhhc-ccHHHHHhcCCeE
Confidence 345778888875 67889888 78864 27999999963100 00011000 0123456778999
Q ss_pred EEEcCCCCCCCCCChh--hhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEccc
Q 002209 715 ILGGPTTPIIGEGDEE--ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (953)
Q Consensus 715 V~~~~~~~~~G~G~~~--~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (953)
|++++..+..++.... ....+.....+|+... +.++..+|+++++|+|+||||++|+.++.++|++|+++++++|
T Consensus 69 vv~pd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg 145 (280)
T 1r88_A 69 VVAPAGGAYSMYTNWEQDGSKQWDTFLSAELPDW---LAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSG 145 (280)
T ss_dssp EEEECCCTTSTTSBCSSCTTCBHHHHHHTHHHHH---HHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred EEEECCCCCCccCCCCCCCCCcHHHHHHHHHHHH---HHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECC
Confidence 9998874433332110 1112323334444444 4443447778999999999999999999999999999999999
Q ss_pred CCCCCCCCcC------ccc----ccchhhhh--HHHHHhcCcccccCCC---CCcEEEEE----eCCCCC-------CCC
Q 002209 793 AYNRTLTPFG------FQN----EDRTLWEA--TSTYVEMSPFMSANKL---KKPILLVH----GEEDNN-------SGT 846 (953)
Q Consensus 793 ~~d~~~~~~~------~~~----~~~~~~~~--~~~~~~~sp~~~~~~i---~~P~Li~~----G~~D~~-------v~~ 846 (953)
.++....... ... .....|.. ...+...+|+.++.++ +.|+|+.| |+.|.. ++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~- 224 (280)
T 1r88_A 146 FLYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEA- 224 (280)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHCCCTHHHHCCGGGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHH-
T ss_pred ccCcCCccchhhHHHHhhhccccchhhhcCCCchhhhHhcCHHHHHHhhhccCCeEEEEeccCCCCCCcccccchhHHH-
Confidence 8764221000 000 00001110 1223455676656555 57999999 999983 46
Q ss_pred chHHHHHHHHHHHhCC-CcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 847 LTMQSDRFFNALKGHG-ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 847 ~~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
..++++++++|++.| +++++.++++++|.+. .+...+...+.||.+-+.
T Consensus 225 -~~~~~~~~~~L~~~g~~~~~~~~~~~g~H~~~---~w~~~l~~~l~~~~~~~~ 274 (280)
T 1r88_A 225 -MGNSRMFYNQYRSVGGHNGHFDFPASGDNGWG---SWAPQLGAMSGDIVGAIR 274 (280)
T ss_dssp -HHHHHHHHHHHHHTTCCSEEEECCSSCCSSHH---HHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHCCCcceEEEecCCCCcChh---HHHHHHHHHHHHHHHHHh
Confidence 899999999999999 9999999988899763 344556667778777664
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-15 Score=163.87 Aligned_cols=284 Identities=10% Similarity=-0.010 Sum_probs=175.6
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
+..++|||||++|++.... +... ...+.|++||..+ + .....+. .+..
T Consensus 43 ~~~~~~s~dg~~l~~~~~~-----------------------~~~~---~~~~~v~~~d~~~-~--~~~~~~~---~~~~ 90 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQ-----------------------SRKL---DKGGVVYRLDPVT-L--EVTQAIH---NDLK 90 (353)
T ss_dssp EEEEEEETTTTEEEEEECC-----------------------CTTT---EESEEEEEECTTT-C--CEEEEEE---ESSC
T ss_pred ccceEECCCCCEEEEEcCC-----------------------CcCC---CCCccEEEEcCCC-C--eEEEEEe---cCCC
Confidence 4468999999999776653 1000 0114789998743 2 1222222 2235
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc-----cccccceEEecCCeEEEEEecCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-----NAIFDNFVWVNNSTLLVCTIPLL 265 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~-----~~~~~~~~wspDg~~l~~~~~~~ 265 (953)
...+.|+|||++|++... ....|+++|+++++.......+.... ......++|+|||+.++++..
T Consensus 91 ~~~~~~s~dg~~l~v~~~--------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-- 160 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNT--------VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI-- 160 (353)
T ss_dssp CCSEEEETTTTEEEEEET--------TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE--
T ss_pred cceEEECCCCCEEEEEec--------CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEec--
Confidence 678999999998887653 24589999999888654433322100 001346899999999887610
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCC-C-CcccccccCCC
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-P-AVYTSLDPSPD 342 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~-~-~~~~~~~~SpD 342 (953)
. ....|+++|+ +++...... . .....++||||
T Consensus 161 ------------------------------------~---------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d 195 (353)
T 3vgz_A 161 ------------------------------------G---------KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSE 195 (353)
T ss_dssp ------------------------------------S---------SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETT
T ss_pred ------------------------------------C---------CCceEEEEcCCCCceEEEecCCCCccceEEECCC
Confidence 0 1356889999 776554433 3 45788999999
Q ss_pred CcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 343 G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
|++|++... .+.+++||+.+++.......... +....+..++|+|||+.+++. .
T Consensus 196 g~~l~~~~~-------------~~~i~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~-~---- 249 (353)
T 3vgz_A 196 GKRLYTTNA-------------DGELITIDTADNKILSRKKLLDD--------GKEHFFINISLDTARQRAFIT-D---- 249 (353)
T ss_dssp TTEEEEECT-------------TSEEEEEETTTTEEEEEEECCCS--------SSCCCEEEEEEETTTTEEEEE-E----
T ss_pred CCEEEEEcC-------------CCeEEEEECCCCeEEEEEEcCCC--------CCCcccceEEECCCCCEEEEE-e----
Confidence 999888763 23899999987665433222110 001223468999999976544 1
Q ss_pred CCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCC
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 502 (953)
...+.++++|. ..++........ ....+.|+|||++|+++...+ . .|+++|..++ +........
T Consensus 250 -------~~~~~v~~~d~---~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~-~--~v~~~d~~~~--~~~~~~~~~ 313 (353)
T 3vgz_A 250 -------SKAAEVLVVDT---RNGNILAKVAAP-ESLAVLFNPARNEAYVTHRQA-G--KVSVIDAKSY--KVVKTFDTP 313 (353)
T ss_dssp -------SSSSEEEEEET---TTCCEEEEEECS-SCCCEEEETTTTEEEEEETTT-T--EEEEEETTTT--EEEEEEECC
T ss_pred -------CCCCEEEEEEC---CCCcEEEEEEcC-CCceEEECCCCCEEEEEECCC-C--eEEEEECCCC--eEEEEEecC
Confidence 22468999996 444433322222 235689999999887765433 2 7889998875 222222221
Q ss_pred CccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 503 ~~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
. .... +.|+|||++|+.....
T Consensus 314 ~-~~~~------~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 314 T-HPNS------LALSADGKTLYVSVKQ 334 (353)
T ss_dssp S-EEEE------EEECTTSCEEEEEEEC
T ss_pred C-CCCe------EEEcCCCCEEEEEEcc
Confidence 1 1112 7899999988877643
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.6e-15 Score=167.63 Aligned_cols=306 Identities=11% Similarity=0.029 Sum_probs=184.4
Q ss_pred CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCC-ccccccccceEEecCCeEEEEEecCCC
Q 002209 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD-IYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 188 ~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~-~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
+..+..++|+| ++.++++.. ....|+++|+++++..+...... ......+..++|+|||+.++...
T Consensus 122 ~~~~~~~~~s~-~~~~~~~~~--------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~---- 188 (433)
T 3bws_A 122 GFQPKSVRFID-NTRLAIPLL--------EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQM---- 188 (433)
T ss_dssp SSCBCCCEESS-SSEEEEEBT--------TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEG----
T ss_pred CCCceEEEEeC-CCeEEEEeC--------CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEEC----
Confidence 34566899999 556666542 23469999999888765432211 00111266789999998777550
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-CcccccccCCCC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDE 343 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDG 343 (953)
..+.|+++++ +++. ..+... ..+..++|+|||
T Consensus 189 ---------------------------------------------~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (433)
T 3bws_A 189 ---------------------------------------------QANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIR 223 (433)
T ss_dssp ---------------------------------------------GGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTT
T ss_pred ---------------------------------------------CCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCC
Confidence 2356888888 6644 334333 667889999999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
++|+++... .+.|++||+.++......... ..+..++|+|||+.++........
T Consensus 224 ~~l~~~~~~------------~~~i~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~~g~~l~~~~~~~~~- 277 (433)
T 3bws_A 224 DLVYCSNWI------------SEDISVIDRKTKLEIRKTDKI-------------GLPRGLLLSKDGKELYIAQFSASN- 277 (433)
T ss_dssp TEEEEEETT------------TTEEEEEETTTTEEEEECCCC-------------SEEEEEEECTTSSEEEEEEEESCT-
T ss_pred CEEEEEecC------------CCcEEEEECCCCcEEEEecCC-------------CCceEEEEcCCCCEEEEEECCCCc-
Confidence 998777622 248999999866543322211 124578999999977665221110
Q ss_pred CcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCC
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 503 (953)
. ....+.|++||+ .+++.............++|+|||+.|++....+ . .++++++.++ +........
T Consensus 278 -~---~~~dg~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-~--~v~v~d~~~~--~~~~~~~~~- 344 (433)
T 3bws_A 278 -Q---ESGGGRLGIYSM---DKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCC-S--KIEVYDLKEK--KVQKSIPVF- 344 (433)
T ss_dssp -T---CSCCEEEEEEET---TTTEEEEEEEEEECEEEEEECSSTTEEEEEETTT-T--EEEEEETTTT--EEEEEEECS-
T ss_pred -c---ccCCCeEEEEEC---CCCcEEeeccCCCCcceEEECCCCCEEEEEecCC-C--EEEEEECCCC--cEEEEecCC-
Confidence 0 013558999996 4444444333344566799999999988775443 2 6888888764 222222211
Q ss_pred ccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeec
Q 002209 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583 (953)
Q Consensus 504 ~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 583 (953)
..+.. +.|+|||++|+......+......++.+ .....|++||+.+++.......... +.
T Consensus 345 ~~~~~------~~~s~dg~~l~~~~~~~~~~~~~~~~~g------~~dg~v~~~d~~~~~~~~~~~~~~~-----~~--- 404 (433)
T 3bws_A 345 DKPNT------IALSPDGKYLYVSCRGPNHPTEGYLKKG------LVLGKVYVIDTTTDTVKEFWEAGNQ-----PT--- 404 (433)
T ss_dssp SSEEE------EEECTTSSEEEEEECCCCCTTTCTTSCC------SSCCEEEEEETTTTEEEEEEECSSS-----EE---
T ss_pred CCCCe------EEEcCCCCEEEEEecCCCcccccccccc------ccceEEEEEECCCCcEEEEecCCCC-----Cc---
Confidence 11222 7899999988877642210000000000 0123699999999887766554322 11
Q ss_pred cCCccccccccCCEEEEEEecCCCCceEEEEECC
Q 002209 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWP 617 (953)
Q Consensus 584 ~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 617 (953)
..+|+|||+.+++..... ..++++++.
T Consensus 405 ----~~~~s~dg~~l~~~~~~d---~~i~v~~~~ 431 (433)
T 3bws_A 405 ----GLDVSPDNRYLVISDFLD---HQIRVYRRD 431 (433)
T ss_dssp ----EEEECTTSCEEEEEETTT---TEEEEEEET
T ss_pred ----eEEEcCCCCEEEEEECCC---CeEEEEEec
Confidence 246899999887655422 356776653
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-15 Score=166.45 Aligned_cols=287 Identities=11% Similarity=0.089 Sum_probs=174.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCce--eeeecCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE--IEIQGFPD 187 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~--~~l~~~~~ 187 (953)
.+..++|||||++||..+.+ +.|.||++.. +.. .......+
T Consensus 18 ~v~~l~~sp~g~~las~~~D---------------------------------~~i~iw~~~~----~~~~~~~~~~~~h 60 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGD---------------------------------RRIRIWGTEG----DSWICKSVLSEGH 60 (345)
T ss_dssp CEEEEEECTTSSCEEEEETT---------------------------------SCEEEEEEET----TEEEEEEEECSSC
T ss_pred cEEEEEECCCCCEEEEEcCC---------------------------------CeEEEEEcCC----Ccceeeeeecccc
Confidence 45678999999999998875 3678999853 221 11111112
Q ss_pred CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCcee---ecccCCCccccccccceEEecCCeEEEEEecC
Q 002209 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR---PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (953)
Q Consensus 188 ~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~---~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 264 (953)
...+...+|||||++|+.... ...+.+++...+... .+..+.. .+..++|+|||+.|+...
T Consensus 61 ~~~v~~~~~sp~g~~l~s~s~---------D~~v~iw~~~~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~s-- 124 (345)
T 3fm0_A 61 QRTVRKVAWSPCGNYLASASF---------DATTCIWKKNQDDFECVTTLEGHEN-----EVKSVAWAPSGNLLATCS-- 124 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEET---------TSCEEEEEECCC-EEEEEEECCCSS-----CEEEEEECTTSSEEEEEE--
T ss_pred CCcEEEEEECCCCCEEEEEEC---------CCcEEEEEccCCCeEEEEEccCCCC-----CceEEEEeCCCCEEEEEE--
Confidence 246889999999999988652 344555565555432 2222222 277899999999998761
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc----eeEeCCC-Ccccccc
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----VKEIGPP-AVYTSLD 338 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~----~~~l~~~-~~~~~~~ 338 (953)
..+.|.++++ ++. ...+... ..+..++
T Consensus 125 -----------------------------------------------~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (345)
T 3fm0_A 125 -----------------------------------------------RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV 157 (345)
T ss_dssp -----------------------------------------------TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred -----------------------------------------------CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence 1234556666 432 2233333 6788899
Q ss_pred cCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002209 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (953)
Q Consensus 339 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~ 418 (953)
|+|||+.|+..+.+. .|.+|+...+....+.... +....+..++|+|||+.|+..
T Consensus 158 ~~p~~~~l~s~s~d~-------------~i~~w~~~~~~~~~~~~~~----------~h~~~v~~l~~sp~g~~l~s~-- 212 (345)
T 3fm0_A 158 WHPSQELLASASYDD-------------TVKLYREEEDDWVCCATLE----------GHESTVWSLAFDPSGQRLASC-- 212 (345)
T ss_dssp ECSSSSCEEEEETTS-------------CEEEEEEETTEEEEEEEEC----------CCSSCEEEEEECTTSSEEEEE--
T ss_pred ECCCCCEEEEEeCCC-------------cEEEEEecCCCEEEEEEec----------CCCCceEEEEECCCCCEEEEE--
Confidence 999999999887443 8999999866533222211 112345689999999877655
Q ss_pred eccCCCcccccccCCeEEEEecCCCCCCCc------------eEE---ee-cccccCCeeeccCCceEEEEEecccCceE
Q 002209 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGP------------EIL---HK-LDLRYGGISWCDDSLALVYESWYKTRRTR 482 (953)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~------------~~l---~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 482 (953)
+....|.+|+. ...+.. ..+ .. +...+..++|+|++..|+.++.++. .+
T Consensus 213 -----------s~D~~v~iW~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~--i~ 277 (345)
T 3fm0_A 213 -----------SDDRTVRIWRQ--YLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA--IR 277 (345)
T ss_dssp -----------ETTSCEEEEEE--ECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC--EE
T ss_pred -----------eCCCeEEEecc--ccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe--EE
Confidence 34456777763 111111 111 11 3344667899999999988776543 47
Q ss_pred EEEEcCCCCCCCcEE-e----ecCCCccccCCCCCCCeEeccCCC-EEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEE
Q 002209 483 TWVISPGSKDVAPRI-L----FDRSSEDVYSDPGSPMMRRTSTGT-YVIAKIKKENDEGTYILLNGNGATPEGNIPFLDL 556 (953)
Q Consensus 483 l~~~d~~~~~~~~~~-~----~~~~~~~~~~~~~~p~~~~SpDG~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 556 (953)
+|.++.......+.. + .......+.. ++|+|++. .|+....+. .+.+
T Consensus 278 vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~------v~~~p~~~~~laS~s~Dg---------------------~v~~ 330 (345)
T 3fm0_A 278 VFQEDPNSDPQQPTFSLTAHLHQAHSQDVNC------VAWNPKEPGLLASCSDDG---------------------EVAF 330 (345)
T ss_dssp EEEECTTSCTTSCCEEEEEEETTSSSSCEEE------EEECSSSTTEEEEEETTS---------------------CEEE
T ss_pred EEEeCCCCCcceeeEEEEeeecccccCcEeE------eEEeCCCceEEEEcCCCC---------------------cEEE
Confidence 887765432112111 1 1222333333 78999985 666554221 3888
Q ss_pred EECCCCc
Q 002209 557 FDINTGS 563 (953)
Q Consensus 557 ~d~~~~~ 563 (953)
|++.+++
T Consensus 331 W~~~~~~ 337 (345)
T 3fm0_A 331 WKYQRPE 337 (345)
T ss_dssp EEECC--
T ss_pred EEecCCC
Confidence 9887655
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-14 Score=160.02 Aligned_cols=275 Identities=9% Similarity=-0.036 Sum_probs=174.9
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
...++|||||++|++..... ........|+++|+++++.......+.. ...++|+|||+.++++..
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~--~~~~~~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~------- 108 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQS--RKLDKGGVVYRLDPVTLEVTQAIHNDLK-----PFGATINNTTQTLWFGNT------- 108 (353)
T ss_dssp EEEEEEETTTTEEEEEECCC--TTTEESEEEEEECTTTCCEEEEEEESSC-----CCSEEEETTTTEEEEEET-------
T ss_pred ccceEECCCCCEEEEEcCCC--cCCCCCccEEEEcCCCCeEEEEEecCCC-----cceEEECCCCCEEEEEec-------
Confidence 45689999999997765311 0001256899999999886655443322 458899999998887610
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-C---------cccccc
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-A---------VYTSLD 338 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~---------~~~~~~ 338 (953)
....|+++|+ +|+. ..+..+ . ....++
T Consensus 109 -----------------------------------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (353)
T 3vgz_A 109 -----------------------------------------VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELV 147 (353)
T ss_dssp -----------------------------------------TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEE
T ss_pred -----------------------------------------CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEE
Confidence 2246888888 7754 333322 1 146689
Q ss_pred cCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002209 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (953)
Q Consensus 339 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~ 418 (953)
|||||++|++..... ...|++||+++++......... ..+..++|+|||+.+++.
T Consensus 148 ~s~dg~~l~~~~~~~-----------~~~i~~~d~~~~~~~~~~~~~~------------~~~~~~~~s~dg~~l~~~-- 202 (353)
T 3vgz_A 148 ADDATNTVYISGIGK-----------ESVIWVVDGGNIKLKTAIQNTG------------KMSTGLALDSEGKRLYTT-- 202 (353)
T ss_dssp EETTTTEEEEEEESS-----------SCEEEEEETTTTEEEEEECCCC------------TTCCCCEEETTTTEEEEE--
T ss_pred ECCCCCEEEEEecCC-----------CceEEEEcCCCCceEEEecCCC------------CccceEEECCCCCEEEEE--
Confidence 999999988776321 2379999998665543322111 123578999999977665
Q ss_pred eccCCCcccccccCCeEEEEecCCCCCCCce-EEee----cccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCC
Q 002209 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHK----LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV 493 (953)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~-~l~~----~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~ 493 (953)
...+.++++|+ ..++.. .+.. .......++|+|||++|++..... ..|+++|+.++
T Consensus 203 -----------~~~~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~---~~v~~~d~~~~-- 263 (353)
T 3vgz_A 203 -----------NADGELITIDT---ADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA---AEVLVVDTRNG-- 263 (353)
T ss_dssp -----------CTTSEEEEEET---TTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS---SEEEEEETTTC--
T ss_pred -----------cCCCeEEEEEC---CCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC---CEEEEEECCCC--
Confidence 33567889995 334332 2222 122234589999999987765332 37999998875
Q ss_pred CcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcc
Q 002209 494 APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKE 573 (953)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~ 573 (953)
+......... . ..+.|+|||++++..... ...|++||+.+++..........
T Consensus 264 ~~~~~~~~~~--~------~~~~~s~dg~~l~v~~~~--------------------~~~v~~~d~~~~~~~~~~~~~~~ 315 (353)
T 3vgz_A 264 NILAKVAAPE--S------LAVLFNPARNEAYVTHRQ--------------------AGKVSVIDAKSYKVVKTFDTPTH 315 (353)
T ss_dssp CEEEEEECSS--C------CCEEEETTTTEEEEEETT--------------------TTEEEEEETTTTEEEEEEECCSE
T ss_pred cEEEEEEcCC--C------ceEEECCCCCEEEEEECC--------------------CCeEEEEECCCCeEEEEEecCCC
Confidence 2222222111 1 117899999987766421 13599999998887665544321
Q ss_pred cceeeeEeeccCCccccccccCCEEEEEEec
Q 002209 574 KYYETTVALMSDQTEGDLYLNQLKILTSKES 604 (953)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 604 (953)
.. ..+|++||+.+++....
T Consensus 316 -----~~-------~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 316 -----PN-------SLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -----EE-------EEEECTTSCEEEEEEEC
T ss_pred -----CC-------eEEEcCCCCEEEEEEcc
Confidence 11 24689999988887766
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-17 Score=173.91 Aligned_cols=226 Identities=13% Similarity=0.077 Sum_probs=144.1
Q ss_pred CCceEEEEEEcC-CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHH-HHcC-
Q 002209 636 SLQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW-LARG- 712 (953)
Q Consensus 636 ~~~~~~~~~~~~-dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~G- 712 (953)
....+.+++.+. .|..+..++|+|+++++.+ ++|+|+++||++... . ...+ ......+ ++.|
T Consensus 15 ~~~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~--~~Pvl~~lhG~~~~~-----~-------~~~~-~~~~~~~~~~~g~ 79 (275)
T 2qm0_A 15 TSNTEQWKMYSKLEGKEYQIHISKPKQPAPDS--GYPVIYVLDGNAFFQ-----T-------FHEA-VKIQSVRAEKTGV 79 (275)
T ss_dssp CTTEEEEEEECTTTCCEEEEEEECCSSCCCTT--CEEEEEEESHHHHHH-----H-------HHHH-HHHHGGGHHHHCC
T ss_pred cCCceEEEEEecCCCCEEEEEEECCCCCCCCC--CccEEEEecChHHHH-----H-------HHHH-HHHHhhcchhcCC
Confidence 345788889886 6889999999999987654 599999999963110 0 0000 0011112 3467
Q ss_pred --cEEEEcCCCCCCCCCC---h--hhh-----------------hhhHHHHHHHH--HHHHHHHHHcCCCCCCcEEEEEe
Q 002209 713 --FAILGGPTTPIIGEGD---E--EAN-----------------DRFVEQLVACA--EAAVEEVVRRGVAHPSKIAVGGH 766 (953)
Q Consensus 713 --~~V~~~~~~~~~G~G~---~--~~~-----------------~~~~~~~~~D~--~~~~~~l~~~~~~d~~~i~l~G~ 766 (953)
++|+.+++.+...++. . ..+ .......+.+. .+.+.++.++..+|+++++|+||
T Consensus 80 ~~~ivV~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~ 159 (275)
T 2qm0_A 80 SPAIIVGVGYPIEGAFSGEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGH 159 (275)
T ss_dssp CCCEEEEEECSCSSSCCHHHHHHHHCSSCCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEE
T ss_pred CCeEEEEECCCCCCcCcccccccccCCCCccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEe
Confidence 9999877654211110 0 000 00000111221 13455666666688899999999
Q ss_pred ChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCC
Q 002209 767 SYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGT 846 (953)
Q Consensus 767 S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~ 846 (953)
||||++++.++.++|+.|+++++.+|.+.+.. . ......+.+.... .......|++++||+.|..++
T Consensus 160 S~GG~~a~~~~~~~p~~f~~~~~~s~~~~~~~-------~--~~~~~~~~~~~~~---~~~~~~~~~~l~~G~~D~~~~- 226 (275)
T 2qm0_A 160 XLGGLFALHILFTNLNAFQNYFISSPSIWWNN-------K--SVLEKEENLIIEL---NNAKFETGVFLTVGSLEREHM- 226 (275)
T ss_dssp THHHHHHHHHHHHCGGGCSEEEEESCCTTHHH-------H--GGGGGTTHHHHHH---HTCSSCEEEEEEEETTSCHHH-
T ss_pred cchhHHHHHHHHhCchhhceeEEeCceeeeCh-------H--HHHHHHHHHHhhh---cccCCCceEEEEeCCcccchh-
Confidence 99999999999999999999999998753110 0 0000011111100 023456799999999999877
Q ss_pred chHHHHHHHHHH---HhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 847 LTMQSDRFFNAL---KGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 847 ~~~~~~~~~~~l---~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
..++++++++| +..|+++++.++|+++|+.. ....+...++||
T Consensus 227 -~~~~~~~~~~L~~~~~~g~~~~~~~~~g~~H~~~----~~~~l~~~l~~l 272 (275)
T 2qm0_A 227 -VVGANELSERLLQVNHDKLKFKFYEAEGENHASV----VPTSLSKGLRFI 272 (275)
T ss_dssp -HHHHHHHHHHHHHCCCTTEEEEEEEETTCCTTTH----HHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHhcccCCceEEEEECCCCCcccc----HHHHHHHHHHHH
Confidence 89999999999 56788999999999999642 223334455554
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-16 Score=167.70 Aligned_cols=227 Identities=15% Similarity=0.129 Sum_probs=144.3
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
..+.+++.. +|..+....+.+..- ++..|+||++||..... .. .......|+++||.|+.
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~p~vv~~hG~~~~~-----------~~----~~~~~~~l~~~g~~v~~ 78 (315)
T 4f0j_A 19 PVHYLDFTS-QGQPLSMAYLDVAPK----KANGRTILLMHGKNFCA-----------GT----WERTIDVLADAGYRVIA 78 (315)
T ss_dssp CCEEEEEEE-TTEEEEEEEEEECCS----SCCSCEEEEECCTTCCG-----------GG----GHHHHHHHHHTTCEEEE
T ss_pred cceeEEEec-CCCCeeEEEeecCCC----CCCCCeEEEEcCCCCcc-----------hH----HHHHHHHHHHCCCeEEE
Confidence 466777765 666666555544321 23478999999964211 11 12445678889999999
Q ss_pred cCCCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCC
Q 002209 718 GPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (953)
+|. +|+|.+.... ........|+.++++.+ +.+++.|+|||+||.+++.++.++|++++++|+++|..
T Consensus 79 ~d~---~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 149 (315)
T 4f0j_A 79 VDQ---VGFCKSSKPAHYQYSFQQLAANTHALLERL------GVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIG 149 (315)
T ss_dssp ECC---TTSTTSCCCSSCCCCHHHHHHHHHHHHHHT------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSC
T ss_pred eec---CCCCCCCCCCccccCHHHHHHHHHHHHHHh------CCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcc
Confidence 554 6777664432 23445555555554442 34689999999999999999999999999999999864
Q ss_pred CCCCCCcCccc-----------------------------ccch---hhh---------------------hHHHHHhcC
Q 002209 795 NRTLTPFGFQN-----------------------------EDRT---LWE---------------------ATSTYVEMS 821 (953)
Q Consensus 795 d~~~~~~~~~~-----------------------------~~~~---~~~---------------------~~~~~~~~s 821 (953)
........... .... .|. ........+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (315)
T 4f0j_A 150 LEDWKALGVPWRSVDDWYRRDLQTSAEGIRQYQQATYYAGEWRPEFDRWVQMQAGMYRGKGRESVAWNSALTYDMIFTQP 229 (315)
T ss_dssp SSCHHHHTCCCCCHHHHHHHHTTCCHHHHHHHHHHHTSTTCCCGGGHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHCC
T ss_pred cCCcccccchhhhhHHHHhhcccCChHHHHHHHHHHHhccccCCchHHHHHHHHHHhhccCcchhhHHHHHhcCccccch
Confidence 21100000000 0000 000 001112233
Q ss_pred cccccCCCCCcEEEEEeCCCCCCCCchHHH------------HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHH
Q 002209 822 PFMSANKLKKPILLVHGEEDNNSGTLTMQS------------DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889 (953)
Q Consensus 822 p~~~~~~i~~P~Li~~G~~D~~v~~~~~~~------------~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~ 889 (953)
....+.++++|+|+++|++|..+| ..+. .+..+.+......+++++++++||... .++...+.+.
T Consensus 230 ~~~~l~~~~~P~lii~G~~D~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~p~~~~~~ 306 (315)
T 4f0j_A 230 VVYELDRLQMPTLLLIGEKDNTAI--GKDAAPAELKARLGNYAQLGKDAARRIPQATLVEFPDLGHTPQ-IQAPERFHQA 306 (315)
T ss_dssp CGGGGGGCCSCEEEEEETTCCCCT--TGGGSCHHHHTTSCCHHHHHHHHHHHSTTEEEEEETTCCSCHH-HHSHHHHHHH
T ss_pred hhhhcccCCCCeEEEEecCCCcCc--cccccccccccccccchhhhhHHHhhcCCceEEEeCCCCcchh-hhCHHHHHHH
Confidence 445678899999999999999987 5544 445555555555689999999999863 4566777778
Q ss_pred HHHHHHH
Q 002209 890 TDRWLQK 896 (953)
Q Consensus 890 i~~fl~~ 896 (953)
+.+||++
T Consensus 307 i~~fl~~ 313 (315)
T 4f0j_A 307 LLEGLQT 313 (315)
T ss_dssp HHHHHCC
T ss_pred HHHHhcc
Confidence 8888754
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7e-17 Score=186.30 Aligned_cols=248 Identities=13% Similarity=0.137 Sum_probs=160.1
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcc------cCC--CCCCCCccchHHHHH
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQV------RGS--PNEFPRIGSTSVLLW 708 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~l 708 (953)
+..+.+.++..||.+|.+.+|+|++ .+++|+||+.||...........+ .+. ...+..+....++.|
T Consensus 39 ~~~~~v~i~~~DG~~L~a~l~~P~~-----~~~~P~vl~~~pyg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l 113 (560)
T 3iii_A 39 IMEKDGTVEMRDGEKLYINIFRPNK-----DGKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSFTPEESPDPGFW 113 (560)
T ss_dssp EEEEEEEEECTTSCEEEEEEEECSS-----SSCEEEEEEEESSCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCCHHHH
T ss_pred EEEEEEEEECCCCcEEEEEEEecCC-----CCCCCEEEEecCCCCCcccccccccccccccccccccccccccCCCHHHH
Confidence 3467899999999999999999985 246999999997421110000000 000 000100101125689
Q ss_pred HHcCcEEEEcCCCCCCCCCChhhhh-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEE
Q 002209 709 LARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (953)
Q Consensus 709 a~~G~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (953)
+++||+|+.+|++ |.|.+.+.. .+......|+.++++||.+++++| .||+++|+||||++++.+|+..|+.++|+
T Consensus 114 a~~Gy~vv~~D~R---G~G~S~G~~~~~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p~~l~ai 189 (560)
T 3iii_A 114 VPNDYVVVKVALR---GSDKSKGVLSPWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKAM 189 (560)
T ss_dssp GGGTCEEEEEECT---TSTTCCSCBCTTSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCCTTEEEE
T ss_pred HhCCCEEEEEcCC---CCCCCCCccccCChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCCCceEEE
Confidence 9999999996554 555554322 334578999999999999988887 89999999999999999999998999999
Q ss_pred EEcccCCCCCC---CCcCccccc-chhh------------------hh-------HHHHHhcCcccccCCCCCcEEEEEe
Q 002209 788 IARSGAYNRTL---TPFGFQNED-RTLW------------------EA-------TSTYVEMSPFMSANKLKKPILLVHG 838 (953)
Q Consensus 788 v~~~~~~d~~~---~~~~~~~~~-~~~~------------------~~-------~~~~~~~sp~~~~~~i~~P~Li~~G 838 (953)
|+.+|+.|... ..-+..... ...| .. .+.+...++ .+++|++|+|+++|
T Consensus 190 v~~~~~~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~~d~~W~~~~~--~~~~I~vPvl~v~G 267 (560)
T 3iii_A 190 IPWEGLNDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFDDFWKQRQV--PLSQIKTPLLTCAS 267 (560)
T ss_dssp EEESCCCBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCSSCHHHHTTBC--CGGGCCSCEEEEEE
T ss_pred EecCCcccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCCcchHhhccCC--chhhCCCCEEEeCC
Confidence 99999877321 000000000 0011 00 012222333 57889999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccCCC
Q 002209 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (953)
..|..+. ...+.+.|++++..+ +.+++.++ +|+. ........+.+++||++||+..+
T Consensus 268 w~D~~~~--~~g~l~~y~~l~~~~--k~l~ih~~-~~~~--~~~~~~~~~~~~~wfD~~LkG~~ 324 (560)
T 3iii_A 268 WSTQGLH--NRGSFEGFKQAASEE--KWLYVHGR-KEWE--SYYARENLERQKSFFDFYLKEEN 324 (560)
T ss_dssp GGGTTTT--HHHHHHHHHHCCCSS--EEEEEESS-CHHH--HHHSHHHHHHHHHHHHHHTSCCC
T ss_pred cCCCccc--chhHHHHHHhccccC--cEEEECCC-CCcC--cccChhHHHHHHHHHHHHhCCCC
Confidence 9997555 667778888776543 34444332 3321 00012456788999999998654
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.70 E-value=9.9e-16 Score=164.94 Aligned_cols=227 Identities=11% Similarity=0.049 Sum_probs=141.9
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEc
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (953)
.+...+...+|.+++++.+.|.+..+ .+.|+||++||.... .......+..|+++||.|+++
T Consensus 7 ~~~~~i~~~dG~~l~~~~~~p~~~~~---~~~~~VvllHG~g~~---------------~~~~~~~~~~L~~~G~~Vi~~ 68 (305)
T 1tht_A 7 TIAHVLRVNNGQELHVWETPPKENVP---FKNNTILIASGFARR---------------MDHFAGLAEYLSTNGFHVFRY 68 (305)
T ss_dssp CEEEEEEETTTEEEEEEEECCCTTSC---CCSCEEEEECTTCGG---------------GGGGHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCEEEEEEecCcccCC---CCCCEEEEecCCccC---------------chHHHHHHHHHHHCCCEEEEe
Confidence 34556778899999999988753111 136889999995211 011123456778899999995
Q ss_pred CCCCCCCC-CChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 719 PTTPIIGE-GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 719 ~~~~~~G~-G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
|. +|+ |.+.... ........|+.++++++.+.+ .++++|+||||||.+++.++.+ | +++++|+.++..+
T Consensus 69 D~---rGh~G~S~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~~~~ 140 (305)
T 1tht_A 69 DS---LHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD-L-ELSFLITAVGVVN 140 (305)
T ss_dssp CC---CBCC--------CCCHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESCCSC
T ss_pred eC---CCCCCCCCCcccceehHHHHHHHHHHHHHHHhCC---CCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecCchh
Confidence 54 565 6664321 124567889999999997543 4689999999999999999988 6 7999998877543
Q ss_pred CCC-----CCcCc--------ccc----cch--hhhhHHHHHhc------CcccccCCCCCcEEEEEeCCCCCCCCchHH
Q 002209 796 RTL-----TPFGF--------QNE----DRT--LWEATSTYVEM------SPFMSANKLKKPILLVHGEEDNNSGTLTMQ 850 (953)
Q Consensus 796 ~~~-----~~~~~--------~~~----~~~--~~~~~~~~~~~------sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~ 850 (953)
... ....+ ... ... ........... +....+.++++|+|++||++|..+| +..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~vp--~~~ 218 (305)
T 1tht_A 141 LRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVK--QEE 218 (305)
T ss_dssp HHHHHHHHHSSCGGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSC--HHH
T ss_pred HHHHHHHHhhhhhhhcchhhCcccccccccccCHHHHHHHHHhccccchhhHHHHHhhcCCCEEEEEeCCCCccC--HHH
Confidence 100 00000 000 000 00000011111 1223567899999999999999998 888
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH---HHHHHHHHHHHHHh
Q 002209 851 SDRFFNALKGHGALCRLVILPFESHGYAARESI---MHVLWETDRWLQKY 897 (953)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~---~~~~~~i~~fl~~~ 897 (953)
+.++++.+.. ..++++++|++||.+. +.. ..+++.+.+|....
T Consensus 219 ~~~l~~~i~~--~~~~l~~i~~agH~~~--e~p~~~~~fl~~~~~~~~~~ 264 (305)
T 1tht_A 219 VYDMLAHIRT--GHCKLYSLLGSSHDLG--ENLVVLRNFYQSVTKAAIAM 264 (305)
T ss_dssp HHHHHTTCTT--CCEEEEEETTCCSCTT--SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CCcEEEEeCCCCCchh--hCchHHHHHHHHHHHHHHHh
Confidence 8877765532 2479999999999874 332 23444555554443
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-15 Score=162.62 Aligned_cols=264 Identities=10% Similarity=0.067 Sum_probs=171.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++|+..+.+ +.|.|||+.+ + .....+.. ...
T Consensus 57 ~v~~~~~s~d~~~l~s~s~D---------------------------------g~v~iWd~~~-~--~~~~~~~~--~~~ 98 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQD---------------------------------GKLIIWDSYT-T--NKVHAIPL--RSS 98 (340)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------TEEEEEETTT-C--CEEEEEEC--SSS
T ss_pred ceEEEEECCCCCEEEEEeCC---------------------------------CcEEEEECCC-C--CcceEeec--CCc
Confidence 56788999999999988875 3679999843 2 22233332 223
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce-----eecccCCCccccccccceEEecCCeEEEEEecC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-----RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 264 (953)
.+....|+|||+.|+... ....+.++++.+++. ..+..+.. .+..+.|+++++.+..+
T Consensus 99 ~v~~~~~s~~~~~l~s~~---------~d~~v~iw~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~l~s~s--- 161 (340)
T 1got_B 99 WVMTCAYAPSGNYVACGG---------LDNICSIYNLKTREGNVRVSRELAGHTG-----YLSCCRFLDDNQIVTSS--- 161 (340)
T ss_dssp CEEEEEECTTSSEEEEEE---------TTCEEEEEETTTCSBSCEEEEEEECCSS-----CEEEEEEEETTEEEEEE---
T ss_pred cEEEEEECCCCCEEEEEe---------CCCeEEEEECccCCCcceeEEEecCCCc-----cEEEEEECCCCcEEEEE---
Confidence 688899999999988754 245777788776531 12222222 26678899999744322
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeCCC-CcccccccCC
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSP 341 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~Sp 341 (953)
..+.|.++|+ +++.. .+... ..+..++|+|
T Consensus 162 -----------------------------------------------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~ 194 (340)
T 1got_B 162 -----------------------------------------------GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194 (340)
T ss_dssp -----------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred -----------------------------------------------CCCcEEEEECCCCcEEEEEcCCCCceEEEEECC
Confidence 2245777888 77543 34444 7788999999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
||+.|+..+.+. .|.+||+..+. ...+..+. ..+..++|+|||+.++..
T Consensus 195 ~~~~l~sg~~d~-------------~v~~wd~~~~~~~~~~~~h~-------------~~v~~v~~~p~~~~l~s~---- 244 (340)
T 1got_B 195 DTRLFVSGACDA-------------SAKLWDVREGMCRQTFTGHE-------------SDINAICFFPNGNAFATG---- 244 (340)
T ss_dssp TSSEEEEEETTS-------------CEEEEETTTCSEEEEECCCS-------------SCEEEEEECTTSSEEEEE----
T ss_pred CCCEEEEEeCCC-------------cEEEEECCCCeeEEEEcCCc-------------CCEEEEEEcCCCCEEEEE----
Confidence 999888777443 89999997544 33333322 335679999999876655
Q ss_pred cCCCcccccccCCeEEEEecCCCCCCCceEEeecc---cccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEE
Q 002209 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD---LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (953)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~---~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 497 (953)
+..+.+.+||+ ..++........ ..+..++|+|||+.|+....++ .+.++|..++ +...
T Consensus 245 ---------s~d~~v~iwd~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~----~i~vwd~~~~--~~~~ 306 (340)
T 1got_B 245 ---------SDDATCRLFDL---RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF----NCNVWDALKA--DRAG 306 (340)
T ss_dssp ---------ETTSCEEEEET---TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS----EEEEEETTTC--CEEE
T ss_pred ---------cCCCcEEEEEC---CCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCC----eEEEEEcccC--cEee
Confidence 44567899996 333222211222 2456789999999988876543 4666666654 2333
Q ss_pred eecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 498 LFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 498 ~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
........+.. +.|+|||++|+....
T Consensus 307 ~~~~h~~~v~~------~~~s~dg~~l~s~s~ 332 (340)
T 1got_B 307 VLAGHDNRVSC------LGVTDDGMAVATGSW 332 (340)
T ss_dssp EEECCSSCEEE------EEECTTSSCEEEEET
T ss_pred EeecCCCcEEE------EEEcCCCCEEEEEcC
Confidence 33333333333 789999999988763
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-14 Score=158.94 Aligned_cols=279 Identities=14% Similarity=0.118 Sum_probs=179.3
Q ss_pred CCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceee-cccCCCccccccccceEEecCCeEEEEEecC
Q 002209 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP-LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (953)
Q Consensus 186 ~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 264 (953)
.+...+....|+|||+.|+... ...|.++++++++... +...........+..++|+|||+.|++..
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-- 116 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG----------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG-- 116 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC----------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE--
T ss_pred cCCCceEEEEEecCCcEEEEcC----------CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc--
Confidence 3445789999999999998843 4578888887764322 21100000112277899999999888761
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc---eeEeCCC-Cccccccc
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLDP 339 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~---~~~l~~~-~~~~~~~~ 339 (953)
..+.|.++++ +++ ...+... ..+..++|
T Consensus 117 -----------------------------------------------~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 149 (337)
T 1gxr_A 117 -----------------------------------------------EASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149 (337)
T ss_dssp -----------------------------------------------SSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred -----------------------------------------------CCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence 2246777787 554 2233333 66788999
Q ss_pred CCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002209 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (953)
Q Consensus 340 SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~ 418 (953)
+|||+.|+....+ +.|.+||+.+++.. .+..+. ..+..+.|+|||+.++..
T Consensus 150 ~~~~~~l~~~~~d-------------g~v~~~d~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~-- 201 (337)
T 1gxr_A 150 SPDSKVCFSCCSD-------------GNIAVWDLHNQTLVRQFQGHT-------------DGASCIDISNDGTKLWTG-- 201 (337)
T ss_dssp CTTSSEEEEEETT-------------SCEEEEETTTTEEEEEECCCS-------------SCEEEEEECTTSSEEEEE--
T ss_pred CCCCCEEEEEeCC-------------CcEEEEeCCCCceeeeeeccc-------------CceEEEEECCCCCEEEEE--
Confidence 9999999988743 38999999865543 333221 234679999999877665
Q ss_pred eccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEe
Q 002209 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (953)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 498 (953)
+..+.+++||+ ..++..........+..+.|+|||+.|++....+ .++++++.++ +...+
T Consensus 202 -----------~~dg~i~~~d~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~----~i~~~~~~~~--~~~~~ 261 (337)
T 1gxr_A 202 -----------GLDNTVRSWDL---REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESS----NVEVLHVNKP--DKYQL 261 (337)
T ss_dssp -----------ETTSEEEEEET---TTTEEEEEEECSSCEEEEEECTTSSEEEEEETTS----CEEEEETTSS--CEEEE
T ss_pred -----------ecCCcEEEEEC---CCCceEeeecCCCceEEEEECCCCCEEEEEcCCC----cEEEEECCCC--CeEEE
Confidence 44568999996 4444433444556677899999999998876443 4666777664 22222
Q ss_pred ecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceee
Q 002209 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYET 578 (953)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~ 578 (953)
......+.. +.|+|||++|+....+ ..+++||+.+++..........
T Consensus 262 -~~~~~~v~~------~~~~~~~~~l~~~~~d---------------------g~i~~~~~~~~~~~~~~~~~~~----- 308 (337)
T 1gxr_A 262 -HLHESCVLS------LKFAYCGKWFVSTGKD---------------------NLLNAWRTPYGASIFQSKESSS----- 308 (337)
T ss_dssp -CCCSSCEEE------EEECTTSSEEEEEETT---------------------SEEEEEETTTCCEEEEEECSSC-----
T ss_pred -cCCccceeE------EEECCCCCEEEEecCC---------------------CcEEEEECCCCeEEEEecCCCc-----
Confidence 222222222 7899999998876632 2499999998877644333321
Q ss_pred eEeeccCCccccccccCCEEEEEEecCCCCceEEEEE
Q 002209 579 TVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQS 615 (953)
Q Consensus 579 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~ 615 (953)
+. ...|++|++.++..... ..+++++
T Consensus 309 v~-------~~~~s~~~~~l~~~~~d----g~i~iw~ 334 (337)
T 1gxr_A 309 VL-------SCDISVDDKYIVTGSGD----KKATVYE 334 (337)
T ss_dssp EE-------EEEECTTSCEEEEEETT----SCEEEEE
T ss_pred EE-------EEEECCCCCEEEEecCC----CeEEEEE
Confidence 11 24688999877654433 2355554
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-15 Score=170.56 Aligned_cols=290 Identities=10% Similarity=0.125 Sum_probs=168.2
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCC
Q 002209 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (953)
Q Consensus 108 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~ 187 (953)
.+.+..++|||||+.++++... .+......+.++.|+||++.... ..+.+..+..
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~----------------------~g~~~~~~~~d~~v~iw~~~~~~---~~~~~~~~~~ 66 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTV----------------------SGTVDANFSTDSSLELWSLLAAD---SEKPIASLQV 66 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCB----------------------SSCCCSSCCCCCCCEEEESSSGG---GCSCSCCCCC
T ss_pred hhhcceEeeCCCCCCEEEEEec----------------------CcccccccCCCCeEEEEEccCCC---CCcEEEEEec
Confidence 3467789999999844444421 01001111122468999985411 1112222333
Q ss_pred CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC----C-ceeecccCCCccccccccceEEecC-CeEEEEE
Q 002209 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT----G-KARPLFQSPDIYLNAIFDNFVWVNN-STLLVCT 261 (953)
Q Consensus 188 ~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~----g-~~~~lt~~~~~~~~~~~~~~~wspD-g~~l~~~ 261 (953)
...+..+.|+|||+.|+.... ...|.++++.+ . ....+..+.. .+..++|+|| ++.|+..
T Consensus 67 ~~~v~~~~~s~~~~~l~~~~~---------dg~v~vw~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~ 132 (416)
T 2pm9_A 67 DSKFNDLDWSHNNKIIAGALD---------NGSLELYSTNEANNAINSMARFSNHSS-----SVKTVKFNAKQDNVLASG 132 (416)
T ss_dssp SSCEEEEEECSSSSCEEEEES---------SSCEEEECCSSTTSCCCEEEECCCSSS-----CCCEEEECSSSTTBEEEE
T ss_pred CCceEEEEECCCCCeEEEEcc---------CCeEEEeecccccccccchhhccCCcc-----ceEEEEEcCCCCCEEEEE
Confidence 457899999999999988552 45677777766 2 2333433322 2778999999 7777755
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-------eeEe---CC
Q 002209 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-------VKEI---GP 330 (953)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-------~~~l---~~ 330 (953)
. ..+.|.++|+ +++ ...+ ..
T Consensus 133 ~-------------------------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 163 (416)
T 2pm9_A 133 G-------------------------------------------------NNGEIFIWDMNKCTESPSNYTPLTPGQSMS 163 (416)
T ss_dssp C-------------------------------------------------SSSCEEBCBTTTTSSCTTTCCCBCCCCSCC
T ss_pred c-------------------------------------------------CCCeEEEEECCCCccccccccccccccccC
Confidence 1 1234566666 443 1111 12
Q ss_pred C-CcccccccCCC-CcEEEEEEecCCccccccCCCCCcceEEEeccCceEEE-eccCCCcccCCccccccccCccceeec
Q 002209 331 P-AVYTSLDPSPD-EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWR 407 (953)
Q Consensus 331 ~-~~~~~~~~SpD-G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~-l~~~~~~~~~p~~~~~~~~~~~~~~ws 407 (953)
. ..+..++|+|| ++.|+....+ +.|.+||+..+.... +...... .+....+..++|+
T Consensus 164 ~~~~v~~~~~~~~~~~~l~~~~~d-------------g~v~iwd~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 164 SVDEVISLAWNQSLAHVFASAGSS-------------NFASIWDLKAKKEVIHLSYTSPN-------SGIKQQLSVVEWH 223 (416)
T ss_dssp SSCCCCEEEECSSCTTEEEEESSS-------------SCEEEEETTTTEEEEEECCCCCS-------SCCCCCEEEEEEC
T ss_pred CCCCeeEEEeCCCCCcEEEEEcCC-------------CCEEEEECCCCCcceEEeccccc-------cccCCceEEEEEC
Confidence 2 67788999999 5555554422 389999998655433 3321100 0011345679999
Q ss_pred cCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEEe-ecccccCCeeecc-CCceEEEEEecccCceEEE
Q 002209 408 SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILH-KLDLRYGGISWCD-DSLALVYESWYKTRRTRTW 484 (953)
Q Consensus 408 pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~-~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~ 484 (953)
|||+.+++..... .....|.+||+ .++... ..+. .+...+..+.|+| |++.|+....++ .|.
T Consensus 224 ~~~~~~l~~~~~d---------~~~~~i~~~d~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg----~v~ 288 (416)
T 2pm9_A 224 PKNSTRVATATGS---------DNDPSILIWDL--RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN----TVL 288 (416)
T ss_dssp SSCTTEEEEEECC---------SSSCCCCEEET--TSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS----EEE
T ss_pred CCCCCEEEEEECC---------CCCceEEEEeC--CCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCC----CEE
Confidence 9997655552110 01127888886 222232 3344 4666778899999 888888776543 577
Q ss_pred EEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCC-CEEEEEe
Q 002209 485 VISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTG-TYVIAKI 528 (953)
Q Consensus 485 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG-~~l~~~~ 528 (953)
++++.++ +...........+.. +.|+||| +.|+...
T Consensus 289 ~wd~~~~--~~~~~~~~~~~~v~~------~~~s~~~~~~l~s~~ 325 (416)
T 2pm9_A 289 LWNPESA--EQLSQFPARGNWCFK------TKFAPEAPDLFACAS 325 (416)
T ss_dssp EECSSSC--CEEEEEECSSSCCCC------EEECTTCTTEEEECC
T ss_pred EeeCCCC--ccceeecCCCCceEE------EEECCCCCCEEEEEe
Confidence 7777764 333333333333333 8899999 6666554
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.8e-15 Score=164.07 Aligned_cols=241 Identities=12% Similarity=0.076 Sum_probs=162.6
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
+..++|||||++|+++... + +.|++||+.+ ++.... +..+..
T Consensus 34 ~~~~~~s~dg~~l~~~~~~------------------------d--------~~i~v~d~~~----~~~~~~--~~~~~~ 75 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAH------------------------S--------NDVSIIDTAT----NNVIAT--VPAGSS 75 (391)
T ss_dssp EEEEEECTTSSEEEEEEGG------------------------G--------TEEEEEETTT----TEEEEE--EECSSS
T ss_pred cceEEECCCCCEEEEECCC------------------------C--------CeEEEEECCC----CeEEEE--EECCCC
Confidence 4578999999998776532 0 2689999843 332222 222336
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
+..+.|||||++|++... ....|+++|+++++.......... +..++|+|||+.|+++..
T Consensus 76 v~~~~~spdg~~l~~~~~--------~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~------- 135 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNM--------ASSTLSVIDTTSNTVAGTVKTGKS-----PLGLALSPDGKKLYVTNN------- 135 (391)
T ss_dssp EEEEEECTTSSEEEEEET--------TTTEEEEEETTTTEEEEEEECSSS-----EEEEEECTTSSEEEEEET-------
T ss_pred ccceEECCCCCEEEEEEC--------CCCEEEEEECCCCeEEEEEeCCCC-----cceEEECCCCCEEEEEeC-------
Confidence 888999999999988642 246899999999887665544332 568999999998876610
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCC-CCcccccccCCCCcEEEE
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-PAVYTSLDPSPDEKYILI 348 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~-~~~~~~~~~SpDG~~l~~ 348 (953)
....|+++|+ +++...... ...+..++|+|||++|++
T Consensus 136 -----------------------------------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~ 174 (391)
T 1l0q_A 136 -----------------------------------------GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYV 174 (391)
T ss_dssp -----------------------------------------TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEE
T ss_pred -----------------------------------------CCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEE
Confidence 2356888898 776544433 356678999999999977
Q ss_pred EEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (953)
+... .+.|++||+.++......... ..+..++|+|||+.++.....
T Consensus 175 ~~~~------------~~~v~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~~g~~l~~~~~~--------- 220 (391)
T 1l0q_A 175 ANFD------------SMSISVIDTVTNSVIDTVKVE-------------AAPSGIAVNPEGTKAYVTNVD--------- 220 (391)
T ss_dssp EETT------------TTEEEEEETTTTEEEEEEECS-------------SEEEEEEECTTSSEEEEEEEC---------
T ss_pred EeCC------------CCEEEEEECCCCeEEEEEecC-------------CCccceEECCCCCEEEEEecC---------
Confidence 6522 247999999876654433221 223578999999977666210
Q ss_pred cccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 429 VTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 429 ~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
...+.+++||+ ..++.............+.|+|||++|+++...+ + .++++|+.++
T Consensus 221 -~~~~~v~~~d~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d-~--~v~v~d~~~~ 276 (391)
T 1l0q_A 221 -KYFNTVSMIDT---GTNKITARIPVGPDPAGIAVTPDGKKVYVALSFX-N--TVSVIDTATN 276 (391)
T ss_dssp -SSCCEEEEEET---TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT-T--EEEEEETTTT
T ss_pred -cCCCcEEEEEC---CCCeEEEEEecCCCccEEEEccCCCEEEEEcCCC-C--EEEEEECCCC
Confidence 13568999996 4443333333333456789999999987775443 2 6788888775
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-14 Score=155.99 Aligned_cols=275 Identities=9% Similarity=-0.025 Sum_probs=165.5
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce-eecccCCCccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLFQSPDIYL 242 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~ 242 (953)
.|.+||+.+ ++........ .... .++|||||++|+++.. +...|+++|+++++. .........
T Consensus 21 ~v~~~d~~~----~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~--------~~~~i~~~d~~~~~~~~~~~~~~~~-- 84 (331)
T 3u4y_A 21 RISFFSTDT----LEILNQITLG-YDFV-DTAITSDCSNVVVTSD--------FCQTLVQIETQLEPPKVVAIQEGQS-- 84 (331)
T ss_dssp EEEEEETTT----CCEEEEEECC-CCEE-EEEECSSSCEEEEEES--------TTCEEEEEECSSSSCEEEEEEECSS--
T ss_pred eEEEEeCcc----cceeeeEEcc-CCcc-eEEEcCCCCEEEEEeC--------CCCeEEEEECCCCceeEEecccCCC--
Confidence 679999853 3322222122 2345 8999999998887653 245999999998875 332222221
Q ss_pred cccccc-eEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc
Q 002209 243 NAIFDN-FVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (953)
Q Consensus 243 ~~~~~~-~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 321 (953)
... ++|+|||+.|+.. . ..+ +...|+++|+
T Consensus 85 ---~~~~~~~s~dg~~l~~~-~--------------------------------------~~~-------~~~~i~v~d~ 115 (331)
T 3u4y_A 85 ---SMADVDITPDDQFAVTV-T--------------------------------------GLN-------HPFNMQSYSF 115 (331)
T ss_dssp ---CCCCEEECTTSSEEEEC-C--------------------------------------CSS-------SSCEEEEEET
T ss_pred ---CccceEECCCCCEEEEe-c--------------------------------------CCC-------CcccEEEEEC
Confidence 335 8999999999833 0 000 1127889998
Q ss_pred -CCceeEeC-CCCcccccccCCCCcEEEEEEecCCccccccCCCCCcc-eEEEeccCc-eEEEeccCCCcccCCcccccc
Q 002209 322 -DGTVKEIG-PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQ-VGVWTTDGI-FVRELCDLPLAEDIPIAFNSV 397 (953)
Q Consensus 322 -~g~~~~l~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~-i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~ 397 (953)
+++..... .......++|||||++|+++.... .. +++|+++.. .......... ..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------------~~~i~~~~~~~~g~~~~~~~~~~---------~~ 174 (331)
T 3u4y_A 116 LKNKFISTIPIPYDAVGIAISPNGNGLILIDRSS------------ANTVRRFKIDADGVLFDTGQEFI---------SG 174 (331)
T ss_dssp TTTEEEEEEECCTTEEEEEECTTSSCEEEEEETT------------TTEEEEEEECTTCCEEEEEEEEE---------CS
T ss_pred CCCCeEEEEECCCCccceEECCCCCEEEEEecCC------------CceEEEEEECCCCcEeecCCccc---------cC
Confidence 77654433 335567899999999988776331 25 888888732 2211110000 00
Q ss_pred ccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc---eEEeecccccCCeeeccCCceEEEEE
Q 002209 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVYES 474 (953)
Q Consensus 398 ~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~---~~l~~~~~~~~~~~~SpDg~~l~~~~ 474 (953)
..++..++|+|||+.+++.. ...+.++++|+ ..++. ............++|||||++|+++.
T Consensus 175 ~~~~~~~~~spdg~~l~v~~------------~~~~~v~v~d~---~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 175 GTRPFNITFTPDGNFAFVAN------------LIGNSIGILET---QNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp SSSEEEEEECTTSSEEEEEE------------TTTTEEEEEEC---SSTTSCEEEEEEECSSCCCCEEECTTSSEEEEEC
T ss_pred CCCccceEECCCCCEEEEEe------------CCCCeEEEEEC---CCCcccceeeeccCCCCCceEEECCCCCEEEEEE
Confidence 12346799999999766551 22457899996 44443 22223345567899999999987765
Q ss_pred ecccCceEEEEEcCCCCCCCcEEee--cCC----CccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCC
Q 002209 475 WYKTRRTRTWVISPGSKDVAPRILF--DRS----SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPE 548 (953)
Q Consensus 475 ~~~~~~~~l~~~d~~~~~~~~~~~~--~~~----~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~ 548 (953)
..+ ..|+++|+.++ +...+. ... ....+ ....+.|||||++|++...+
T Consensus 240 ~~~---~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~v~~~~------------------ 293 (331)
T 3u4y_A 240 EST---VDVFNFNQLSG--TLSFVKSFGHGLLIDPRPLF---GANQMALNKTETKLFISANI------------------ 293 (331)
T ss_dssp SSE---EEEEEEETTTT--EEEEEEEEECCCCCCCGGGT---TCCCEEECTTSSEEEEEETT------------------
T ss_pred cCC---CEEEEEECCCC--ceeeecccccccccCCCCcc---cccceEECCCCCEEEEecCC------------------
Confidence 322 36889998875 221111 111 01111 00116899999998877521
Q ss_pred CCCCeEEEEECCCCceEEE
Q 002209 549 GNIPFLDLFDINTGSKERI 567 (953)
Q Consensus 549 ~~~~~L~~~d~~~~~~~~l 567 (953)
...+.+||+.+.....+
T Consensus 294 --~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 294 --SRELKVFTISGKVVGYV 310 (331)
T ss_dssp --TTEEEEEETTSCEEEEC
T ss_pred --CCcEEEEEecCCcccce
Confidence 22589999987665544
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=180.30 Aligned_cols=309 Identities=9% Similarity=-0.035 Sum_probs=185.1
Q ss_pred CCCCceecCCCCEEEEEecCCCC----CccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecC
Q 002209 110 PLPALSFSPQRDKILFLKRRALP----PLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF 185 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~ 185 (953)
.+.+++|||||++||.++.+... ....+......+..+.+.|++. . .+|++.+ +. ....++ +
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~--~--------~~~~~~~-~~--~~~~~~-~ 82 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEF--E--------NKLDFEL-AQ--QNGLLN-S 82 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCC--C--------CTTTTSC-CC--SSCSST-T
T ss_pred cEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCC--c--------ceEEEEe-CC--CceEee-c
Confidence 68899999999999998876211 1111122223344566666651 1 2222321 11 111122 2
Q ss_pred CCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCC
Q 002209 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (953)
Q Consensus 186 ~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 265 (953)
.....+...+|||||++||.... ...+.+++.++ ....+. +........+..++|||||+.|+.+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~---------dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs--- 148 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSN---------NGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN--- 148 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEET---------TSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE---
T ss_pred CCCCcEEEEEECCCCCEEEEEeC---------CCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEc---
Confidence 33347999999999999998663 44566677544 222232 22100011266899999999999772
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc--------eeEe----CCC-
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--------VKEI----GPP- 331 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~--------~~~l----~~~- 331 (953)
..+.|.++++ ++. ...+ ...
T Consensus 149 ----------------------------------------------~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~ 182 (588)
T 2j04_A 149 ----------------------------------------------EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSK 182 (588)
T ss_dssp ----------------------------------------------TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC
T ss_pred ----------------------------------------------CCCEEEEEECCCCccccccceeeeeeeccccccc
Confidence 2245666677 553 2333 222
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE----EeccCCCcccCCccccccccCccceeec
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR----ELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~----~l~~~~~~~~~p~~~~~~~~~~~~~~ws 407 (953)
..+.+++||||| |+..+.+ +.+++|+++++... .+... ....+.+++|+
T Consensus 183 ~~V~sVawSPdg--Laass~D-------------~tVrlWd~~~~~~~~~~~tL~~~------------h~~~V~svaFs 235 (588)
T 2j04_A 183 DWVTHIVWYEDV--LVAALSN-------------NSVFSMTVSASSHQPVSRMIQNA------------SRRKITDLKIV 235 (588)
T ss_dssp CCEEEEEEETTE--EEEEETT-------------CCEEEECCCSSSSCCCEEEEECC------------CSSCCCCEEEE
T ss_pred ccEEEEEEcCCc--EEEEeCC-------------CeEEEEECCCCccccceeeeccc------------ccCcEEEEEEE
Confidence 578899999999 6655534 38999999876532 23211 11345689999
Q ss_pred cCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe-ecccccCCeee--ccCCceEEEEEecccCceEEE
Q 002209 408 SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISW--CDDSLALVYESWYKTRRTRTW 484 (953)
Q Consensus 408 pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~-~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~l~ 484 (953)
|+.|+-. . .+.|.+|++ .+++...+. .+...+..++| ||||+.|+.+.+.+ . +||
T Consensus 236 --g~~LASa-------------~-~~tIkLWd~---~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG--~-klw 293 (588)
T 2j04_A 236 --DYKVVLT-------------C-PGYVHKIDL---KNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTS--Y-KVL 293 (588)
T ss_dssp --TTEEEEE-------------C-SSEEEEEET---TTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCE--E-EEE
T ss_pred --CCEEEEE-------------e-CCeEEEEEC---CCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCC--C-EEE
Confidence 5555544 2 368999996 555553443 55666788999 99998877765433 2 688
Q ss_pred EEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCce
Q 002209 485 VISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSK 564 (953)
Q Consensus 485 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~ 564 (953)
..+ . ++++|||..+++. +. .+++|+..+++.
T Consensus 294 ~~d--~------------------------~~~spd~~l~a~~--d~---------------------~v~lW~~~g~~l 324 (588)
T 2j04_A 294 LED--E------------------------LHVTADNIIAPYL--EK---------------------KFKKWSTIWNEF 324 (588)
T ss_dssp ESS--S------------------------EEEECCCSSHHHH--HH---------------------HHHHTTTTTTSS
T ss_pred eec--c------------------------EEECCCceEEEEc--CC---------------------EEEEEECCCCce
Confidence 765 1 6689999888774 11 266777765553
Q ss_pred EEEeccCcccceeeeEeeccCCccccccccCCEEEEEEe
Q 002209 565 ERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKE 603 (953)
Q Consensus 565 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (953)
..+ .+ . ..+ ...+|||||+.++..+.
T Consensus 325 ~~~-~~--~------~~I----~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 325 NNY-ET--T------LVI----HGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SSS-CC--E------EEE----EEEEECTTSSEEEEEEE
T ss_pred eee-cc--c------eEE----EEEEECCCCCEEEEEEe
Confidence 211 11 1 001 12478999988776444
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-16 Score=176.31 Aligned_cols=213 Identities=10% Similarity=0.111 Sum_probs=137.6
Q ss_pred cCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCC-------CCCCCccchHHH
Q 002209 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSP-------NEFPRIGSTSVL 706 (953)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 706 (953)
...+..+.+++.+.+|..+++++++|++. +++.|+||++||+..... .+.+.. ..|.......+.
T Consensus 87 ~~g~~~e~v~~~~~~g~~l~~~l~~P~~~----~~~~P~Vv~~HG~g~~~~----~~~~~~g~~~~~~~~y~~~~~~~a~ 158 (398)
T 3nuz_A 87 REGYRLEKWEFYPLPKCVSTFLVLIPDNI----NKPVPAILCIPGSGGNKE----GLAGEPGIAPKLNDRYKDPKLTQAL 158 (398)
T ss_dssp CSSEEEEEEEECCSTTBCEEEEEEEESSC----CSCEEEEEEECCTTCCHH----HHHTCCCSSSTTCCSTTCTTTCHHH
T ss_pred cCCEEEEEEEEEcCCCcEEEEEEEeCCCC----CCCccEEEEEcCCCCCcc----cccccccccccccccccchHHHHHH
Confidence 44567789999999999999999999863 246999999999643110 000000 001100013577
Q ss_pred HHHHcCcEEEEcCCCCCCCCCChhh----------------------hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 002209 707 LWLARGFAILGGPTTPIIGEGDEEA----------------------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVG 764 (953)
Q Consensus 707 ~la~~G~~V~~~~~~~~~G~G~~~~----------------------~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~ 764 (953)
.|+++||+|+++|++ |+|.+.. ...+....+.|+.++++||.+++.+|++||+|+
T Consensus 159 ~la~~Gy~Vl~~D~r---G~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~ 235 (398)
T 3nuz_A 159 NFVKEGYIAVAVDNP---AAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVS 235 (398)
T ss_dssp HHHTTTCEEEEECCT---TSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEE
T ss_pred HHHHCCCEEEEecCC---CCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 899999999997665 4444421 112334466899999999999988999999999
Q ss_pred EeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC-----CC----------cCcccccchh---hhhHHHHHhcCccccc
Q 002209 765 GHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL-----TP----------FGFQNEDRTL---WEATSTYVEMSPFMSA 826 (953)
Q Consensus 765 G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~-----~~----------~~~~~~~~~~---~~~~~~~~~~sp~~~~ 826 (953)
||||||++|+.+++.. ++++|+|+.++++.... .. ..+....... ++..+.....
T Consensus 236 G~S~GG~~a~~~aa~~-~~i~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~------ 308 (398)
T 3nuz_A 236 GFSLGTEPMMVLGTLD-TSIYAFVYNDFLCQTQERAEVMTMPDKNGRRPFPNSIRHLIPDFWKNFNFPDIVAAL------ 308 (398)
T ss_dssp EEGGGHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHCCCCCTTSCCCCSSCGGGCCTTHHHHCCHHHHHHHT------
T ss_pred EECHhHHHHHHHHhcC-CcEEEEEEecccccchhhhhhhccccccccccCCccHHHhcchHhhhCCHHHHHHhh------
Confidence 9999999999999887 57899988765433100 00 0000000000 1111111111
Q ss_pred CCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC
Q 002209 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP 871 (953)
Q Consensus 827 ~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~ 871 (953)
...|+||+||+.|.. ..+..++|+++.. ..++++++||
T Consensus 309 --ap~PlLii~G~~D~~----v~~~~~~y~~~g~-~~~~~~~~~p 346 (398)
T 3nuz_A 309 --APRPIILTEGGLDRD----LDLVRKAYAIVGT-PDNVKIYHYK 346 (398)
T ss_dssp --TTSCEEECSCBCHHH----HHHHHHHHHHHTC-TTSEEECCCG
T ss_pred --CCCcEEEeeCCchHH----HHHHHHHHHHcCC-CcceEEEEeC
Confidence 246999999999954 5667777776643 3467777777
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.2e-16 Score=168.75 Aligned_cols=114 Identities=17% Similarity=0.155 Sum_probs=94.5
Q ss_pred cEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeC
Q 002209 760 KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGE 839 (953)
Q Consensus 760 ~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~ 839 (953)
++.++||||||.+++.++.++|++++++|+++|... ..+......+++|+|++||+
T Consensus 199 ~~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~------------------------~~~~~~~~~~~~PvLii~G~ 254 (328)
T 1qlw_A 199 GTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGEC------------------------PKPEDVKPLTSIPVLVVFGD 254 (328)
T ss_dssp SEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCC------------------------CCGGGCGGGTTSCEEEEECS
T ss_pred CceEEEECcccHHHHHHHHhChhheeEEEEeCCCCC------------------------CCHHHHhhccCCCEEEEecc
Confidence 899999999999999999999999999999987531 01111223356899999999
Q ss_pred CCCCCCCch-----HHHHHHHHHHHhCCCcEEEEEeCCCC-----ccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 840 EDNNSGTLT-----MQSDRFFNALKGHGALCRLVILPFES-----HGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 840 ~D~~v~~~~-----~~~~~~~~~l~~~g~~~~~~~~~~~~-----H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
+|..+| . +.++++++.+++.|.+++++++|++| |.+....+...+.+.+.+||++++.
T Consensus 255 ~D~~~p--~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~gi~G~~H~~~~~~~~~~~~~~i~~fl~~~~~ 322 (328)
T 1qlw_A 255 HIEEFP--RWAPRLKACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRNTA 322 (328)
T ss_dssp SCTTCT--TTHHHHHHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHTCC
T ss_pred CCcccc--chhhHHHHHHHHHHHHHHhCCCceEEEcCCCCcCCCcccchhccCHHHHHHHHHHHHHhccc
Confidence 999987 7 88999999999988899999999655 9876555478899999999998764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-14 Score=155.77 Aligned_cols=298 Identities=8% Similarity=-0.024 Sum_probs=174.9
Q ss_pred ceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002209 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (953)
Q Consensus 193 ~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 272 (953)
.+.|+++++.++.+.. ....|+++|+++++.......+... . .++|+|||+.|+++..
T Consensus 2 ~~~~~~~~~~~~v~~~--------~~~~v~~~d~~~~~~~~~~~~~~~~----~-~~~~s~dg~~l~~~~~--------- 59 (331)
T 3u4y_A 2 NAMFQTTSNFGIVVEQ--------HLRRISFFSTDTLEILNQITLGYDF----V-DTAITSDCSNVVVTSD--------- 59 (331)
T ss_dssp -----CCCCEEEEEEG--------GGTEEEEEETTTCCEEEEEECCCCE----E-EEEECSSSCEEEEEES---------
T ss_pred ceeEcCCCCEEEEEec--------CCCeEEEEeCcccceeeeEEccCCc----c-eEEEcCCCCEEEEEeC---------
Confidence 3567788877666542 3568999999998876655443321 4 8899999998887610
Q ss_pred CCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce--eEeCCCCcccc-cccCCCCcEEEE
Q 002209 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV--KEIGPPAVYTS-LDPSPDEKYILI 348 (953)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~--~~l~~~~~~~~-~~~SpDG~~l~~ 348 (953)
....|+++|+ +++. ..+........ ++|||||++|+
T Consensus 60 ---------------------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~- 99 (331)
T 3u4y_A 60 ---------------------------------------FCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV- 99 (331)
T ss_dssp ---------------------------------------TTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE-
T ss_pred ---------------------------------------CCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEE-
Confidence 2347889999 7764 44444444555 89999999998
Q ss_pred EEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (953)
+..... ....|++||+++++........ ..+..++|+|||+.+++. ..
T Consensus 100 ~~~~~~---------~~~~i~v~d~~~~~~~~~~~~~-------------~~~~~~~~spdg~~l~~~-~~--------- 147 (331)
T 3u4y_A 100 TVTGLN---------HPFNMQSYSFLKNKFISTIPIP-------------YDAVGIAISPNGNGLILI-DR--------- 147 (331)
T ss_dssp ECCCSS---------SSCEEEEEETTTTEEEEEEECC-------------TTEEEEEECTTSSCEEEE-EE---------
T ss_pred EecCCC---------CcccEEEEECCCCCeEEEEECC-------------CCccceEECCCCCEEEEE-ec---------
Confidence 432210 1127999999876654432211 123578999999976554 11
Q ss_pred cccCCe-EEEEecCCCCCCCceE----EeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCc-EEeecCC
Q 002209 429 VTPRDI-IYTQQAEPVQGEGPEI----LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP-RILFDRS 502 (953)
Q Consensus 429 ~~~~~~-l~~~d~~~~~g~~~~~----l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~-~~~~~~~ 502 (953)
..+. +++|++ ...+.... ..........+.|+|||++|++....+ . .++++++.++.... .......
T Consensus 148 --~~~~~i~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-~--~v~v~d~~~~~~~~~~~~~~~~ 220 (331)
T 3u4y_A 148 --SSANTVRRFKI--DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG-N--SIGILETQNPENITLLNAVGTN 220 (331)
T ss_dssp --TTTTEEEEEEE--CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT-T--EEEEEECSSTTSCEEEEEEECS
T ss_pred --CCCceEEEEEE--CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCC-C--eEEEEECCCCcccceeeeccCC
Confidence 1234 777775 12222211 112223345689999999988776443 2 68888887752100 2222211
Q ss_pred CccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEee
Q 002209 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVAL 582 (953)
Q Consensus 503 ~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 582 (953)
..... +.|+|||++|+..... ...|++||+.+++.+.+.......... ...
T Consensus 221 -~~~~~------~~~spdg~~l~v~~~~--------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~ 271 (331)
T 3u4y_A 221 -NLPGT------IVVSRDGSTVYVLTES--------------------TVDVFNFNQLSGTLSFVKSFGHGLLID--PRP 271 (331)
T ss_dssp -SCCCC------EEECTTSSEEEEECSS--------------------EEEEEEEETTTTEEEEEEEEECCCCCC--CGG
T ss_pred -CCCce------EEECCCCCEEEEEEcC--------------------CCEEEEEECCCCceeeecccccccccC--CCC
Confidence 11111 7899999988776421 124899999998876553222110000 000
Q ss_pred ccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeE
Q 002209 583 MSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (953)
Q Consensus 583 ~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~ 623 (953)
.......+|+|||+.+++..... ..+.++++.+.....
T Consensus 272 ~~~~~~~~~spdg~~l~v~~~~~---~~v~v~d~~~~~~~~ 309 (331)
T 3u4y_A 272 LFGANQMALNKTETKLFISANIS---RELKVFTISGKVVGY 309 (331)
T ss_dssp GTTCCCEEECTTSSEEEEEETTT---TEEEEEETTSCEEEE
T ss_pred cccccceEECCCCCEEEEecCCC---CcEEEEEecCCcccc
Confidence 00002247999999887765533 468888876654433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-14 Score=180.14 Aligned_cols=262 Identities=11% Similarity=0.084 Sum_probs=174.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++||+...+ +.|.|||+.+ + .....+.. ...
T Consensus 15 ~v~~i~~sp~~~~la~~~~~---------------------------------g~v~iwd~~~-~--~~~~~~~~--~~~ 56 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYS---------------------------------GRVEIWNYET-Q--VEVRSIQV--TET 56 (814)
T ss_dssp CEEEEEECSSSSEEEEEETT---------------------------------SEEEEEETTT-T--EEEEEEEC--CSS
T ss_pred ceEEEEECCCCCEEEEEeCC---------------------------------CEEEEEECCC-C--ceEEEEec--CCC
Confidence 56789999999999998764 3679999843 2 22344443 234
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..+.|||||++|++... ...|.++++.+++........... +..++|+|||+.|+...
T Consensus 57 ~v~~~~~s~~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~------- 116 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSD---------DFRIRVFNYNTGEKVVDFEAHPDY----IRSIAVHPTKPYVLSGS------- 116 (814)
T ss_dssp CEEEEEEEGGGTEEEEEET---------TSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSSSEEEEEE-------
T ss_pred cEEEEEEeCCCCEEEEEeC---------CCeEEEEECCCCcEEEEEecCCCC----EEEEEEeCCCCEEEEEc-------
Confidence 7899999999999998652 568899999888764433322222 77899999999988661
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ce-eEeCCC-CcccccccCC-CCc
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TV-KEIGPP-AVYTSLDPSP-DEK 344 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~-~~l~~~-~~~~~~~~Sp-DG~ 344 (953)
..+.|.++++ ++ .. ..+... ..+..++|+| ||+
T Consensus 117 ------------------------------------------~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 154 (814)
T 3mkq_A 117 ------------------------------------------DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154 (814)
T ss_dssp ------------------------------------------TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE
T ss_pred ------------------------------------------CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC
Confidence 2245667777 44 33 334333 6788999999 888
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeecc--CCCCceEEEEecc
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRS--DKPSTLYWAETQD 421 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wsp--Dg~~i~~~~~~~~ 421 (953)
.|+..+.+ +.|.+||+.++.. ..+.... ...+..+.|+| ||+.++..
T Consensus 155 ~l~~~~~d-------------g~v~vwd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~l~~~----- 204 (814)
T 3mkq_A 155 TFASGCLD-------------RTVKVWSLGQSTPNFTLTTGQ------------ERGVNYVDYYPLPDKPYMITA----- 204 (814)
T ss_dssp EEEEEETT-------------SEEEEEETTCSSCSEEEECCC------------TTCCCEEEECCSTTCCEEEEE-----
T ss_pred EEEEEeCC-------------CeEEEEECCCCcceeEEecCC------------CCCEEEEEEEECCCCCEEEEE-----
Confidence 88887744 3899999975432 2222211 12346789999 88866665
Q ss_pred CCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecC
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 501 (953)
+..+.+.+|+. .++.....+..+...+..+.|+|||+.|+..+.++ .|.++++.++ +.......
T Consensus 205 --------~~dg~i~~~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~v~vwd~~~~--~~~~~~~~ 268 (814)
T 3mkq_A 205 --------SDDLTIKIWDY--QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG----TLKIWNSSTY--KVEKTLNV 268 (814)
T ss_dssp --------CTTSEEEEEET--TTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS----CEEEEETTTC--SEEEEECC
T ss_pred --------eCCCEEEEEEC--CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC----eEEEEECCCC--cEEEEeec
Confidence 44568999996 23322334455666778899999999888776443 4556676664 33333333
Q ss_pred CCccccCCCCCCCeEeccCCCE
Q 002209 502 SSEDVYSDPGSPMMRRTSTGTY 523 (953)
Q Consensus 502 ~~~~~~~~~~~p~~~~SpDG~~ 523 (953)
....+.. ++|+|+|+.
T Consensus 269 ~~~~v~~------~~~~~~~~~ 284 (814)
T 3mkq_A 269 GLERSWC------IATHPTGRK 284 (814)
T ss_dssp SSSSEEE------EEECTTCGG
T ss_pred CCCcEEE------EEEccCCCc
Confidence 3333333 788999984
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.67 E-value=6e-16 Score=152.16 Aligned_cols=173 Identities=12% Similarity=0.055 Sum_probs=121.8
Q ss_pred CccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHH
Q 002209 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (953)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~ 748 (953)
+.|+||++||.... ...+ ........|+++||.|+.+++ +|+|.+..... .....+++..+++
T Consensus 3 ~~~~vv~~HG~~~~-----------~~~~--~~~~~~~~l~~~g~~v~~~d~---~g~g~s~~~~~-~~~~~~~~~~~~~ 65 (176)
T 2qjw_A 3 SRGHCILAHGFESG-----------PDAL--KVTALAEVAERLGWTHERPDF---TDLDARRDLGQ-LGDVRGRLQRLLE 65 (176)
T ss_dssp SSCEEEEECCTTCC-----------TTSH--HHHHHHHHHHHTTCEEECCCC---HHHHTCGGGCT-TCCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCC-----------ccHH--HHHHHHHHHHHCCCEEEEeCC---CCCCCCCCCCC-CCCHHHHHHHHHH
Confidence 37899999995311 1111 112345677889999999554 56666543211 1222344455556
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCC
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK 828 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~ 828 (953)
++.+.. +.++++++|||+||.+++.++.++| ++++|+++|..+... + ....+
T Consensus 66 ~~~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~----~--------------------~~~~~ 117 (176)
T 2qjw_A 66 IARAAT--EKGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGP----L--------------------PALDA 117 (176)
T ss_dssp HHHHHH--TTSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTT----B--------------------CCCCC
T ss_pred HHHhcC--CCCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCccc----c--------------------Ccccc
Confidence 665543 3479999999999999999999997 999999998754311 0 00456
Q ss_pred CCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 829 LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 829 i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
+++|+|++||++|..+| ++.+.++++.+ +++++++ +++|.+ .+....+.+.+.+||++
T Consensus 118 ~~~P~l~i~g~~D~~~~--~~~~~~~~~~~-----~~~~~~~-~~~H~~--~~~~~~~~~~i~~fl~~ 175 (176)
T 2qjw_A 118 AAVPISIVHAWHDELIP--AADVIAWAQAR-----SARLLLV-DDGHRL--GAHVQAASRAFAELLQS 175 (176)
T ss_dssp CSSCEEEEEETTCSSSC--HHHHHHHHHHH-----TCEEEEE-SSCTTC--TTCHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCCccC--HHHHHHHHHhC-----CceEEEe-CCCccc--cccHHHHHHHHHHHHHh
Confidence 78999999999999998 99999998887 3578888 889987 35667777888888764
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=159.94 Aligned_cols=213 Identities=15% Similarity=0.154 Sum_probs=135.0
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC
Q 002209 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (953)
Q Consensus 643 ~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (953)
++...||.+++...+- . -|.||++||.+... ..| ......|+++||.|+++ |
T Consensus 2 ~~~~~~g~~l~y~~~G--------~--g~~vvllHG~~~~~-----------~~w----~~~~~~l~~~g~~vi~~---D 53 (271)
T 3ia2_A 2 TFVAKDGTQIYFKDWG--------S--GKPVLFSHGWLLDA-----------DMW----EYQMEYLSSRGYRTIAF---D 53 (271)
T ss_dssp EEECTTSCEEEEEEES--------S--SSEEEEECCTTCCG-----------GGG----HHHHHHHHTTTCEEEEE---C
T ss_pred eEEcCCCCEEEEEccC--------C--CCeEEEECCCCCcH-----------HHH----HHHHHHHHhCCceEEEe---c
Confidence 3567899988776652 1 24588899963211 011 13345677889999994 5
Q ss_pred CCCCCChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH-hCCCcccEEEEcccCCCCCCC
Q 002209 723 IIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA-HAPHLFCCGIARSGAYNRTLT 799 (953)
Q Consensus 723 ~~G~G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~~~~d~~~~ 799 (953)
.+|+|.+..+ ........+|+.+.++.+ +.+++.|+||||||.+++.+++ +.|++++++|++++.......
T Consensus 54 ~~G~G~S~~~~~~~~~~~~a~d~~~~l~~l------~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~ 127 (271)
T 3ia2_A 54 RRGFGRSDQPWTGNDYDTFADDIAQLIEHL------DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQ 127 (271)
T ss_dssp CTTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBC
T ss_pred CCCCccCCCCCCCCCHHHHHHHHHHHHHHh------CCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCCccccC
Confidence 5677877543 223566778887777765 2468999999999986666555 458899999998764321100
Q ss_pred ----CcCccccc-----chhhh--------------------------------------------hHHHHHhcCccccc
Q 002209 800 ----PFGFQNED-----RTLWE--------------------------------------------ATSTYVEMSPFMSA 826 (953)
Q Consensus 800 ----~~~~~~~~-----~~~~~--------------------------------------------~~~~~~~~sp~~~~ 826 (953)
+....... ..... ....+...+....+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 207 (271)
T 3ia2_A 128 KPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDM 207 (271)
T ss_dssp BTTBTTSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCBCHHHH
T ss_pred CCCCcccccHHHHHHHHHHHHhhHHHHHHHhhHhhhccccccccCHHHHHHHHhhhhhccHHHHHHHHHHhhccCCcccc
Confidence 00000000 00000 00001111222345
Q ss_pred CCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 827 ~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
.++++|+|++||++|..+| ++.+.+++..+.. ..+++++|++||.+. .+..+.+.+.+.+||.
T Consensus 208 ~~i~~P~Lvi~G~~D~~~p--~~~~~~~~~~~~~---~~~~~~~~~~gH~~~-~e~p~~~~~~i~~Fl~ 270 (271)
T 3ia2_A 208 AKIDVPTLVIHGDGDQIVP--FETTGKVAAELIK---GAELKVYKDAPHGFA-VTHAQQLNEDLLAFLK 270 (271)
T ss_dssp TTCCSCEEEEEETTCSSSC--GGGTHHHHHHHST---TCEEEEETTCCTTHH-HHTHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEEeCCCCcCC--hHHHHHHHHHhCC---CceEEEEcCCCCccc-ccCHHHHHHHHHHHhh
Confidence 7899999999999999998 8776555554422 258999999999864 5667788888888875
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-15 Score=164.27 Aligned_cols=275 Identities=12% Similarity=0.065 Sum_probs=169.0
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..|+| ||++|+|+....+........+||++++++++.+++ .. +..+.|||||+.|+|......
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---~~------~~~~~~SpDg~~la~~~~~~~--- 81 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---EN------ATMPRISPDGKKIAFMRANEE--- 81 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE---ES------CEEEEECTTSSEEEEEEEETT---
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc---cc------CCCeEECCCCCEEEEEEeccC---
Confidence 5677888 999999987643222233477899999999988877 22 558999999999998721100
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~ 347 (953)
+ +..+||++++ +|+.+.++.. . +..+.|||||++|+
T Consensus 82 ----------------------------------~-------~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~ 119 (347)
T 2gop_A 82 ----------------------------------K-------KVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLL 119 (347)
T ss_dssp ----------------------------------T-------TEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEE
T ss_pred ----------------------------------C-------CcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEE
Confidence 0 2357999999 8888777655 5 88899999999999
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
|.+.+.+. ....+.+ ..+.|..||.....
T Consensus 120 ~~~~~~~~-------------------~~~~~~~--------------------~~~~~~~~g~~~~~------------ 148 (347)
T 2gop_A 120 IVGFKRRE-------------------DEDFIFE--------------------DDVPAWFDDLGFFD------------ 148 (347)
T ss_dssp EEEECCCC------------------------------------------------CCCC--------------------
T ss_pred EEEccCCC-------------------cCCcEEE--------------------cccceeecCccccc------------
Confidence 99843100 0000000 11224444432110
Q ss_pred ccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCceEEEEEeccc-----C-ceEEEEEcCCCCCCCcEEeec
Q 002209 428 EVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKT-----R-RTRTWVISPGSKDVAPRILFD 500 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~-----~-~~~l~~~d~~~~~~~~~~~~~ 500 (953)
.....|+++++ .+++. +.++. . .+..+.||||| |+|...... . ..+||.++ ++ +.+.++.
T Consensus 149 --~~~~~l~~~d~---~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~--~~~~l~~ 215 (347)
T 2gop_A 149 --GEKTTFWIFDT---ESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DG--KEEKMFE 215 (347)
T ss_dssp ---CEEEEEEEET---TTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TT--EEEEEEE
T ss_pred --CccceEEEEEC---CCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CC--ceEEecc
Confidence 12457899996 56666 66766 4 67789999999 666654432 1 46899999 42 4455554
Q ss_pred CCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeE
Q 002209 501 RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTV 580 (953)
Q Consensus 501 ~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~ 580 (953)
. . .. ..+||||++|+|...... ........|+++| +++.++++..... .+.
T Consensus 216 ~-~-~~--------~~~spdg~~l~~~~~~~~-------------~~~~~~~~l~~~d--~~~~~~l~~~~~~----~~~ 266 (347)
T 2gop_A 216 K-V-SF--------YAVDSDGERILLYGKPEK-------------KYMSEHNKLYIYD--GKEVMGILDEVDR----GVG 266 (347)
T ss_dssp E-E-SE--------EEEEECSSCEEEEECCSS-------------SCCCSSCEEEEEC--SSCEEESSTTCCS----EEE
T ss_pred C-c-ce--------eeECCCCCEEEEEEcccc-------------CCccccceEEEEC--CCceEeccccCCc----ccC
Confidence 3 1 11 345999999999874321 0011245799999 7777777765322 011
Q ss_pred eeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEec
Q 002209 581 ALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITD 626 (953)
Q Consensus 581 ~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~ 626 (953)
. .+.|+ |+ +++...... ...|| ++ +|+.+.++.
T Consensus 267 ~------~~~~s-dg--~~~~~~~~~-~~~l~-~~--~g~~~~~~~ 299 (347)
T 2gop_A 267 Q------AKIKD-GK--VYFTLFEEG-SVNLY-IW--DGEIKPIAK 299 (347)
T ss_dssp E------EEEET-TE--EEEEEEETT-EEEEE-EE--SSSEEEEEC
T ss_pred C------ccEEc-Cc--EEEEEecCC-cEEEE-Ec--CCceEEEec
Confidence 1 14577 76 555544433 35677 77 566666653
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.5e-16 Score=163.10 Aligned_cols=188 Identities=15% Similarity=0.157 Sum_probs=130.5
Q ss_pred EEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh
Q 002209 654 ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND 733 (953)
Q Consensus 654 ~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~ 733 (953)
+.+|.|.....+ .++.|+||++||+... ..........|+++||.|+.+++++. +.
T Consensus 34 ~~~~~p~~~~~~-g~~~p~vv~~HG~~~~---------------~~~~~~~~~~l~~~G~~v~~~d~~~s---~~----- 89 (258)
T 2fx5_A 34 CRIYRPRDLGQG-GVRHPVILWGNGTGAG---------------PSTYAGLLSHWASHGFVVAAAETSNA---GT----- 89 (258)
T ss_dssp EEEEEESSTTGG-GCCEEEEEEECCTTCC---------------GGGGHHHHHHHHHHTCEEEEECCSCC---TT-----
T ss_pred EEEEeCCCCccc-CCCceEEEEECCCCCC---------------chhHHHHHHHHHhCCeEEEEecCCCC---cc-----
Confidence 778888752211 1258999999996321 01123456678889999999777531 11
Q ss_pred hhHHHHHHHHHHHHHHHHHc---------CCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcc
Q 002209 734 RFVEQLVACAEAAVEEVVRR---------GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQ 804 (953)
Q Consensus 734 ~~~~~~~~D~~~~~~~l~~~---------~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~ 804 (953)
..|+..+++++.+. ..+|.++++|+||||||.+++.++ .+++++++++++|..... .
T Consensus 90 ------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a--~~~~v~~~v~~~~~~~~~----~-- 155 (258)
T 2fx5_A 90 ------GREMLACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQPYTLGL----G-- 155 (258)
T ss_dssp ------SHHHHHHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT--TSTTCCEEEEEEECCSST----T--
T ss_pred ------HHHHHHHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc--cCcCeEEEEEecCccccc----c--
Confidence 12333444444432 246778999999999999999887 446899999988753210 0
Q ss_pred cccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHH-HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH
Q 002209 805 NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQ-SDRFFNALKGHGALCRLVILPFESHGYAARESI 883 (953)
Q Consensus 805 ~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~ 883 (953)
.....+.++++|+|++||++|..+| +.. +.++++. .+.+++++++++++|.+.. +..
T Consensus 156 ----------------~~~~~~~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~---~~~~~~~~~~~g~~H~~~~-~~~ 213 (258)
T 2fx5_A 156 ----------------HDSASQRRQQGPMFLMSGGGDTIAF--PYLNAQPVYRR---ANVPVFWGERRYVSHFEPV-GSG 213 (258)
T ss_dssp ----------------CCGGGGGCCSSCEEEEEETTCSSSC--HHHHTHHHHHH---CSSCEEEEEESSCCTTSST-TTC
T ss_pred ----------------cchhhhccCCCCEEEEEcCCCcccC--chhhHHHHHhc---cCCCeEEEEECCCCCcccc-chH
Confidence 0112456788999999999999998 775 7777766 3467899999999998753 334
Q ss_pred HHHHHHHHHHHHHhccCC
Q 002209 884 MHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 884 ~~~~~~i~~fl~~~l~~~ 901 (953)
..+.+.+.+||++++...
T Consensus 214 ~~~~~~i~~fl~~~l~~~ 231 (258)
T 2fx5_A 214 GAYRGPSTAWFRFQLMDD 231 (258)
T ss_dssp GGGHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcCc
Confidence 577888999999888643
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-15 Score=162.36 Aligned_cols=230 Identities=10% Similarity=0.061 Sum_probs=142.7
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+...+|+||+ +|+... ....|.++|+++++...............+..++|+|||++|+...
T Consensus 84 ~v~~~~~s~d~-~l~~~s---------~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs------- 146 (344)
T 4gqb_B 84 GVADLTWVGER-GILVAS---------DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS------- 146 (344)
T ss_dssp CEEEEEEETTT-EEEEEE---------TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE-------
T ss_pred CEEEEEEeCCC-eEEEEE---------CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe-------
Confidence 57889999996 455543 2457788888877643322111001122277899999999998761
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeCCC-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDG~~l 346 (953)
..+.|.++|+ +|+.. .+... ..+..++|+|||+.+
T Consensus 147 ------------------------------------------~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 147 ------------------------------------------KDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp ------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred ------------------------------------------CCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 2245667788 77543 44444 778899999999866
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
+++... .+.|.+||+..++ ...+..... ...+..++|+|++..++...
T Consensus 185 l~s~s~------------D~~v~iwd~~~~~~~~~~~~~~~-----------~~~~~~~~~~p~~~~~l~sg-------- 233 (344)
T 4gqb_B 185 FLSCSE------------DNRILLWDTRCPKPASQIGCSAP-----------GYLPTSLAWHPQQSEVFVFG-------- 233 (344)
T ss_dssp EEEEET------------TSCEEEEETTSSSCEEECC---------------CCCEEEEEECSSCTTEEEEE--------
T ss_pred eeeecc------------ccccccccccccceeeeeeccee-----------eccceeeeecCCCCcceEEe--------
Confidence 554422 2389999998544 333332110 01235789999877655431
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCce-EEEEEecccCceEEEEEcCCCCCCCcEEeecCCCc
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA-LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~-l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 504 (953)
+..+.|.+||+ .++.....+..+...+..++|||||.. |+..+.++ .|.++|..++ + ......+..
T Consensus 234 ----~~dg~v~~wd~--~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~----~i~vwd~~~~--~-~~~~~~H~~ 300 (344)
T 4gqb_B 234 ----DENGTVSLVDT--KSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC----SLAVLDSSLS--E-LFRSQAHRD 300 (344)
T ss_dssp ----ETTSEEEEEES--CC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTS----CEEEECTTCC--E-EEEECCCSS
T ss_pred ----ccCCcEEEEEC--CCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC----eEEEEECCCC--c-EEEEcCCCC
Confidence 33557899996 344445566777777889999999965 44444333 3555677664 2 222334444
Q ss_pred cccCCCCCCCeEeccCCCEEEEEe
Q 002209 505 DVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 505 ~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.+.. ++|||||+.++...
T Consensus 301 ~V~~------v~~sp~~~~llas~ 318 (344)
T 4gqb_B 301 FVRD------ATWSPLNHSLLTTV 318 (344)
T ss_dssp CEEE------EEECSSSTTEEEEE
T ss_pred CEEE------EEEeCCCCeEEEEE
Confidence 4444 88999998766543
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-15 Score=158.92 Aligned_cols=219 Identities=10% Similarity=0.150 Sum_probs=139.8
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC
Q 002209 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (953)
Q Consensus 643 ~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (953)
.+...+|..+ .+|.|.+ ++.|+|||+|||.+..+ +...+ .......+++.||.|+.++|+.
T Consensus 8 ~~~~~~~~~~--~~y~p~~------~~~p~iv~~HGGg~~~g--------~~~~~---~~~~~~~l~~~g~~Vi~vdYrl 68 (274)
T 2qru_A 8 NQTLANGATV--TIYPTTT------EPTNYVVYLHGGGMIYG--------TKSDL---PEELKELFTSNGYTVLALDYLL 68 (274)
T ss_dssp EEECTTSCEE--EEECCSS------SSCEEEEEECCSTTTSC--------CGGGC---CHHHHHHHHTTTEEEEEECCCC
T ss_pred cccccCCeeE--EEEcCCC------CCCcEEEEEeCccccCC--------Chhhc---hHHHHHHHHHCCCEEEEeCCCC
Confidence 3444567554 6787753 24799999999864332 11111 1223445677899999988863
Q ss_pred CCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH---hCCCcccEEEEcccCCCCCCC
Q 002209 723 IIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA---HAPHLFCCGIARSGAYNRTLT 799 (953)
Q Consensus 723 ~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~---~~p~~~~a~v~~~~~~d~~~~ 799 (953)
. . +..++..++|+.++++|+.++.. ++++|+|+|+|+||.+|+.++. ..+..++++++++|..+....
T Consensus 69 a---P-----e~~~p~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~~~~~ 139 (274)
T 2qru_A 69 A---P-----NTKIDHILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDLEFI 139 (274)
T ss_dssp T---T-----TSCHHHHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSCSGGG
T ss_pred C---C-----CCCCcHHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEccccccccc
Confidence 2 1 23457889999999999987642 2679999999999999999987 356788999988887662111
Q ss_pred Cc----Ccc-----------c-c--cchhhhh-H------------HHHHhc-C-------ccc--ccCCCCCcEEEEEe
Q 002209 800 PF----GFQ-----------N-E--DRTLWEA-T------------STYVEM-S-------PFM--SANKLKKPILLVHG 838 (953)
Q Consensus 800 ~~----~~~-----------~-~--~~~~~~~-~------------~~~~~~-s-------p~~--~~~~i~~P~Li~~G 838 (953)
.. .+. . . ....+.. . ..+... . ++. .+.++ .|+||++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-pP~li~~G 218 (274)
T 2qru_A 140 KEPRKLLKQAISAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGDWSAYALSDETLKTF-PPCFSTAS 218 (274)
T ss_dssp GSCCCSCSSCCCSGGGTTSCCSSCCSCCTTCTTHHHHHHHHHTTCHHHHHTCCTTSCCGGGCCCHHHHHTS-CCEEEEEE
T ss_pred CCchhhccccccHHHHhhhcccCCCCCCccccchhhhhhhhhhcchhhccCcccccccccCCCChhhhcCC-CCEEEEEe
Confidence 00 000 0 0 0000000 0 011100 0 011 12445 79999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc---ccHHHHHHHHHHHHHH
Q 002209 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR---ESIMHVLWETDRWLQK 896 (953)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~---~~~~~~~~~i~~fl~~ 896 (953)
+.|..++ ..+++++.+++. +++++++++++|++... .....+.+.+.+||.+
T Consensus 219 ~~D~~~~--~~~~~~l~~~~~----~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~fl~~ 273 (274)
T 2qru_A 219 SSDEEVP--FRYSKKIGRTIP----ESTFKAVYYLEHDFLKQTKDPSVITLFEQLDSWLKE 273 (274)
T ss_dssp TTCSSSC--THHHHHHHHHST----TCEEEEECSCCSCGGGGTTSHHHHHHHHHHHHHHHT
T ss_pred cCCCCcC--HHHHHHHHHhCC----CcEEEEcCCCCcCCccCcCCHHHHHHHHHHHHHHhh
Confidence 9999988 888877776654 46999999999997422 2234567788888865
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-14 Score=163.04 Aligned_cols=233 Identities=15% Similarity=0.134 Sum_probs=146.8
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..+.|||||++|+... ....|.++|+++++........... +..++|+|||+.|+...
T Consensus 125 ~v~~v~~s~dg~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~h~~~----v~~~~~~p~~~~l~s~s------- 184 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGA---------EDRLIRIWDIENRKIVMILQGHEQD----IYSLDYFPSGDKLVSGS------- 184 (393)
T ss_dssp BEEEEEECTTSSEEEEEE---------TTSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTSSEEEEEE-------
T ss_pred eEEEEEECCCCCEEEEEc---------CCCeEEEEECCCCcEEEEEccCCCC----EEEEEEcCCCCEEEEec-------
Confidence 477899999999998855 2568888999988765544333322 77899999999988661
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCCCcccccccCC-CCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPPAVYTSLDPSP-DEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~~~~~~~~~Sp-DG~~l 346 (953)
..+.|.++|+ +++... +.....+..++|+| ||++|
T Consensus 185 ------------------------------------------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (393)
T 1erj_A 185 ------------------------------------------GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 222 (393)
T ss_dssp ------------------------------------------TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEE
T ss_pred ------------------------------------------CCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEE
Confidence 2245667788 775433 33336678889999 99999
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
+..+.+. .|.+||+.++.. ..+...... ..+....+..++|+|||+.++..
T Consensus 223 ~~~s~d~-------------~v~iwd~~~~~~~~~~~~~~~~------~~~h~~~v~~v~~~~~g~~l~s~--------- 274 (393)
T 1erj_A 223 AAGSLDR-------------AVRVWDSETGFLVERLDSENES------GTGHKDSVYSVVFTRDGQSVVSG--------- 274 (393)
T ss_dssp EEEETTS-------------CEEEEETTTCCEEEEEC------------CCCSSCEEEEEECTTSSEEEEE---------
T ss_pred EEEcCCC-------------cEEEEECCCCcEEEeecccccC------CCCCCCCEEEEEECCCCCEEEEE---------
Confidence 8887443 899999985543 333211100 01222345689999999876654
Q ss_pred ccccccCCeEEEEecCCCC---------CCC-ceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCc
Q 002209 426 KVEVTPRDIIYTQQAEPVQ---------GEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP 495 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~---------g~~-~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 495 (953)
+..+.|.+||+.... .+. ...+..+...+..++|+|+|++|+..+.++ .+.++|..++ +.
T Consensus 275 ----s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~----~v~iwd~~~~--~~ 344 (393)
T 1erj_A 275 ----SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR----GVLFWDKKSG--NP 344 (393)
T ss_dssp ----ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS----EEEEEETTTC--CE
T ss_pred ----eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC----eEEEEECCCC--eE
Confidence 445678888861100 001 112334455567789999999988776543 5666677664 33
Q ss_pred EEeecCCCccccCCCCCCCeEe------ccCCCEEEEEe
Q 002209 496 RILFDRSSEDVYSDPGSPMMRR------TSTGTYVIAKI 528 (953)
Q Consensus 496 ~~~~~~~~~~~~~~~~~p~~~~------SpDG~~l~~~~ 528 (953)
..........+.. +.| +|++++|+...
T Consensus 345 ~~~l~~h~~~v~~------v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 345 LLMLQGHRNSVIS------VAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp EEEEECCSSCEEE------EEECSSCTTCTTCEEEEEEE
T ss_pred EEEECCCCCCEEE------EEecCCcCcCCCCCEEEEEC
Confidence 3334433333332 344 45787777665
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-15 Score=165.80 Aligned_cols=202 Identities=10% Similarity=0.056 Sum_probs=134.6
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+...+|||||++|+... ++....|.++|+++++.......... +..++|+|||++|+..
T Consensus 135 ~~~~v~fSpDg~~la~as-------~~~d~~i~iwd~~~~~~~~~~~~~~~-----V~~v~fspdg~~l~s~-------- 194 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIAS-------SKVPAIMRIIDPSDLTEKFEIETRGE-----VKDLHFSTDGKVVAYI-------- 194 (365)
T ss_dssp CEEEEEECTTSSCEEEEE-------SCSSCEEEEEETTTTEEEEEEECSSC-----CCEEEECTTSSEEEEE--------
T ss_pred CEEEEEEcCCCCEEEEEE-------CCCCCEEEEeECCCCcEEEEeCCCCc-----eEEEEEccCCceEEec--------
Confidence 456689999999998865 23356899999999877654443332 7789999999999876
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeC-C-C-CcccccccCCCCc
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIG-P-P-AVYTSLDPSPDEK 344 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~-~-~-~~~~~~~~SpDG~ 344 (953)
....+.+++. +|... ... . . ..+..++|||||+
T Consensus 195 ------------------------------------------s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~ 232 (365)
T 4h5i_A 195 ------------------------------------------TGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT 232 (365)
T ss_dssp ------------------------------------------CSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE
T ss_pred ------------------------------------------cceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC
Confidence 1124556666 55432 222 1 2 5678899999999
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
.++..+.+... ...+++|++.......+...... +....+..++|||||+.|+..
T Consensus 233 ~l~~~s~d~~~---------~~~i~~~~~~~~~~~~~~~~~~~--------~~~~~V~~~~~Spdg~~lasg-------- 287 (365)
T 4h5i_A 233 VLIAASLKKGK---------GIVLTKISIKSGNTSVLRSKQVT--------NRFKGITSMDVDMKGELAVLA-------- 287 (365)
T ss_dssp EEEEEEESSSC---------CEEEEEEEEETTEEEEEEEEEEE--------SSCSCEEEEEECTTSCEEEEE--------
T ss_pred EEEEEecCCcc---------eeEEeecccccceecceeeeeec--------CCCCCeEeEEECCCCCceEEE--------
Confidence 99988755311 12577888875443322111000 111345679999999987766
Q ss_pred cccccccCCeEEEEecCCCCCCCc-eEE-eecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGP-EIL-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~-~~l-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
+..+.|.+||+ ..++. ..+ ..+...+..++|||||++|+..+.+++. +||.+..
T Consensus 288 -----s~D~~V~iwd~---~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tv--rvw~ip~ 343 (365)
T 4h5i_A 288 -----SNDNSIALVKL---KDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTI--HIIKLPL 343 (365)
T ss_dssp -----ETTSCEEEEET---TTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEE--EEEECCT
T ss_pred -----cCCCEEEEEEC---CCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeE--EEEEcCC
Confidence 44568999996 43433 222 3456778899999999999988776643 6776643
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-14 Score=164.00 Aligned_cols=280 Identities=15% Similarity=0.146 Sum_probs=178.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||+.|+..+.+ +.|.|||+.+ + ...+.+.++. .
T Consensus 110 ~V~~~~~~p~~~~l~s~s~D---------------------------------g~i~vwd~~~-~--~~~~~l~~h~--~ 151 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASED---------------------------------ATIKVWDYET-G--DFERTLKGHT--D 151 (410)
T ss_dssp CEEEEEECSSSSEEEEEESS---------------------------------SCEEEEETTT-C--CCCEEECCCS--S
T ss_pred cEEEEEEcCCCCEEEEEeCC---------------------------------CeEEEEECCC-C--cEEEEEeccC--C
Confidence 56678999999999988875 3679999854 2 2233444332 4
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....|+|||+.|+.... +..|.++|+.+++..+........ +..+.|+|||+.|+...
T Consensus 152 ~V~~v~~~~~~~~l~sgs~---------D~~i~iwd~~~~~~~~~~~~h~~~----V~~v~~~p~~~~l~s~s------- 211 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCSA---------DMTIKLWDFQGFECIRTMHGHDHN----VSSVSIMPNGDHIVSAS------- 211 (410)
T ss_dssp CEEEEEECTTSSEEEEEET---------TSCCCEEETTSSCEEECCCCCSSC----EEEEEECSSSSEEEEEE-------
T ss_pred cEEEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCceeEEEcCCCCC----EEEEEEeCCCCEEEEEe-------
Confidence 6889999999998887552 456777788887765443322222 77899999999888661
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCC-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDG~~l 346 (953)
..+.|.++|+ +|. ...+... ..+..+.|+|||+.|
T Consensus 212 ------------------------------------------~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l 249 (410)
T 1vyh_C 212 ------------------------------------------RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI 249 (410)
T ss_dssp ------------------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred ------------------------------------------CCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEE
Confidence 2245777888 664 3444444 677889999999999
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEE-------E
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA-------E 418 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~-------~ 418 (953)
+..+.+. .|.+||+..++.. .+..+. ..+..++|+|++....... .
T Consensus 250 ~s~s~D~-------------~v~vwd~~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~~~~~~~~~~~~~~ 303 (410)
T 1vyh_C 250 ASCSNDQ-------------TVRVWVVATKECKAELREHR-------------HVVECISWAPESSYSSISEATGSETKK 303 (410)
T ss_dssp EEEETTS-------------CEEEEETTTCCEEEEECCCS-------------SCEEEEEECCSCGGGGGGGCCSCC---
T ss_pred EEEcCCC-------------eEEEEECCCCceeeEecCCC-------------ceEEEEEEcCcccccchhhhccccccc
Confidence 8887443 8999999865443 333221 2345688888753210000 0
Q ss_pred eccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEe
Q 002209 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (953)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 498 (953)
....+......+..+.|.+||+ .++.....+..+...+..+.|+|+|++|+..+.++ .|.++|..++ +....
T Consensus 304 ~~~~g~~l~sgs~D~~i~iwd~--~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~----~i~vwd~~~~--~~~~~ 375 (410)
T 1vyh_C 304 SGKPGPFLLSGSRDKTIKMWDV--STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK----TLRVWDYKNK--RCMKT 375 (410)
T ss_dssp ----CCEEEEEETTSEEEEEET--TTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT----EEEEECCTTS--CCCEE
T ss_pred cCCCCCEEEEEeCCCeEEEEEC--CCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCC----eEEEEECCCC--ceEEE
Confidence 0000000011144567999996 23333344556666778899999999998776543 4566666654 22233
Q ss_pred ecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
.......+.. +.|+|+|.+|+....
T Consensus 376 ~~~h~~~v~~------l~~~~~~~~l~sgs~ 400 (410)
T 1vyh_C 376 LNAHEHFVTS------LDFHKTAPYVVTGSV 400 (410)
T ss_dssp EECCSSCEEE------EEECSSSSCEEEEET
T ss_pred EcCCCCcEEE------EEEcCCCCEEEEEeC
Confidence 3333333443 889999999887763
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=170.33 Aligned_cols=186 Identities=16% Similarity=0.114 Sum_probs=129.1
Q ss_pred CCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChh-----------------
Q 002209 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE----------------- 730 (953)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~----------------- 730 (953)
+++|+||++||+... .......+..|+++||+|+++++++. |.+.
T Consensus 96 ~~~P~Vv~~HG~~~~---------------~~~~~~~a~~La~~Gy~V~~~d~~g~---g~s~~~~~~~~~~~~~~~~~~ 157 (383)
T 3d59_A 96 EKYPLVVFSHGLGAF---------------RTLYSAIGIDLASHGFIVAAVEHRDR---SASATYYFKDQSAAEIGDKSW 157 (383)
T ss_dssp SCEEEEEEECCTTCC---------------TTTTHHHHHHHHHTTCEEEEECCCSS---CSSEEEECSSHHHHHHTCCEE
T ss_pred CCCCEEEEcCCCCCC---------------chHHHHHHHHHHhCceEEEEeccCCC---CccceeecCCccccccCCcee
Confidence 369999999996311 01123457789999999999777543 3221
Q ss_pred -------hhh------hhHHHHHHHHHHHHHHHHH--------------------cCCCCCCcEEEEEeChHHHHHHHHH
Q 002209 731 -------AND------RFVEQLVACAEAAVEEVVR--------------------RGVAHPSKIAVGGHSYGAFMTANLL 777 (953)
Q Consensus 731 -------~~~------~~~~~~~~D~~~~~~~l~~--------------------~~~~d~~~i~l~G~S~GG~~a~~~a 777 (953)
... ........|+..++++|.+ ...+|.+||+++|||+||.+++.++
T Consensus 158 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~~a 237 (383)
T 3d59_A 158 LYLRTLKQEEETHIRNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQTL 237 (383)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHHHH
T ss_pred eeccccCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHHHH
Confidence 100 1123346899999999876 4557888999999999999999999
Q ss_pred HhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHH
Q 002209 778 AHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (953)
Q Consensus 778 ~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~ 857 (953)
.+.+ +|+++|+++|... +. . .....++++|+|++||++|..+ .. .+..++
T Consensus 238 ~~~~-~v~a~v~~~~~~~----p~----~----------------~~~~~~i~~P~Lii~g~~D~~~----~~-~~~~~~ 287 (383)
T 3d59_A 238 SEDQ-RFRCGIALDAWMF----PL----G----------------DEVYSRIPQPLFFINSEYFQYP----AN-IIKMKK 287 (383)
T ss_dssp HHCT-TCCEEEEESCCCT----TC----C----------------GGGGGSCCSCEEEEEETTTCCH----HH-HHHHHT
T ss_pred hhCC-CccEEEEeCCccC----CC----c----------------hhhhccCCCCEEEEecccccch----hh-HHHHHH
Confidence 8885 6999999887421 00 0 0123567899999999999743 33 233466
Q ss_pred HHhCCCcEEEEEeCCCCccCCC------------------cccH----HHHHHHHHHHHHHhccCC
Q 002209 858 LKGHGALCRLVILPFESHGYAA------------------RESI----MHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 858 l~~~g~~~~~~~~~~~~H~~~~------------------~~~~----~~~~~~i~~fl~~~l~~~ 901 (953)
+...+.+++++++++++|.+.. ..+. +.+.+.+++||+++|+..
T Consensus 288 l~~~~~~~~~~~~~g~~H~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~~~L~~~ 353 (383)
T 3d59_A 288 CYSPDKERKMITIRGSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLAFLQKHLGLH 353 (383)
T ss_dssp TCCTTSCEEEEEETTCCGGGGSGGGGSSCHHHHHHTTSSCSSCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhcCCceEEEEeCCCcCCCcccHhhhhhHHhhhhhcccCCcCHHHHHHHHHHHHHHHHHHHcCCc
Confidence 6667788999999999998621 1112 233357999999999754
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.66 E-value=8e-16 Score=171.99 Aligned_cols=150 Identities=9% Similarity=0.063 Sum_probs=107.1
Q ss_pred cCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCC-------CCCCCccchHHH
Q 002209 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSP-------NEFPRIGSTSVL 706 (953)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 706 (953)
...+..+.+++++.+|..+++++++|++. +++.|+||++||+..... .+.+.. ..+......++.
T Consensus 82 ~~g~~~e~v~~~~~~g~~l~~~l~~P~~~----~~~~P~Vl~~HG~g~~~~----~~~~~~~~~~~~~~~y~~~~~~~a~ 153 (391)
T 3g8y_A 82 KEGYILEKWEFYPFPKSVSTFLVLKPEHL----KGAVPGVLCIPGSGRTKE----GLVGEPGICDKLTEDYNNPKVSMAL 153 (391)
T ss_dssp ETTEEEEEEEECCSTTCCEEEEEEEETTC----CSCEEEEEEECCTTCCHH----HHTTCCCSSGGGCCCTTSTTTCHHH
T ss_pred cCCEEEEEEEEEcCCCCEEEEEEEeCCCC----CCCCCEEEEeCCCCCCch----hhccccccccccchhhcchHHHHHH
Confidence 34566788999999999999999999763 346999999999632210 010000 000000113567
Q ss_pred HHHHcCcEEEEcCCCCCCCCCChhhh--------h--------------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 002209 707 LWLARGFAILGGPTTPIIGEGDEEAN--------D--------------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVG 764 (953)
Q Consensus 707 ~la~~G~~V~~~~~~~~~G~G~~~~~--------~--------------~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~ 764 (953)
.|+++||+|+++|++ |+|.+... . .+....+.|+.+++++|.+++.+|++||+|+
T Consensus 154 ~la~~G~~Vl~~D~r---g~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~ 230 (391)
T 3g8y_A 154 NMVKEGYVAVAVDNA---AAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVIS 230 (391)
T ss_dssp HHHTTTCEEEECCCT---TSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEE
T ss_pred HHHHCCCEEEEecCC---CccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEE
Confidence 899999999996654 55544321 0 1122345899999999999999999999999
Q ss_pred EeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 765 GHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 765 G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
||||||++++.+++.. ++++++|+.+++..
T Consensus 231 G~S~GG~~al~~a~~~-~~i~a~v~~~~~~~ 260 (391)
T 3g8y_A 231 GFSLGTEPMMVLGVLD-KDIYAFVYNDFLCQ 260 (391)
T ss_dssp EEGGGHHHHHHHHHHC-TTCCEEEEESCBCC
T ss_pred EEChhHHHHHHHHHcC-CceeEEEEccCCCC
Confidence 9999999999999887 57999998877654
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-15 Score=158.10 Aligned_cols=214 Identities=16% Similarity=0.175 Sum_probs=137.5
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
+.+.+|.+++...+-|++ .|.||++||.+... ..| ......|+++||.|++ +|.
T Consensus 3 ~~~~~g~~l~y~~~g~~~--------~~~vvllHG~~~~~--------------~~w-~~~~~~l~~~g~~vi~---~D~ 56 (275)
T 1a88_A 3 VTTSDGTNIFYKDWGPRD--------GLPVVFHHGWPLSA--------------DDW-DNQMLFFLSHGYRVIA---HDR 56 (275)
T ss_dssp EECTTSCEEEEEEESCTT--------SCEEEEECCTTCCG--------------GGG-HHHHHHHHHTTCEEEE---ECC
T ss_pred EEccCCCEEEEEEcCCCC--------CceEEEECCCCCch--------------hhH-HHHHHHHHHCCceEEE---EcC
Confidence 556788888877664421 36799999963211 111 2345568889999999 455
Q ss_pred CCCCChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCcccEEEEcccCCCCCC--
Q 002209 724 IGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTL-- 798 (953)
Q Consensus 724 ~G~G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~d~~~-- 798 (953)
+|+|.+... ........+|+.++++.+ +.+++.|+||||||.+++.+++++ |++++++|++++......
T Consensus 57 ~G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~ 130 (275)
T 1a88_A 57 RGHGRSDQPSTGHDMDTYAADVAALTEAL------DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKS 130 (275)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCB
T ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHHHHc------CCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCCCcccccC
Confidence 678877532 223566778888877775 235899999999999999877776 899999999886421100
Q ss_pred --CCcCcc----------------------------c-c------cch----hhhh------------HHHHHhcCcccc
Q 002209 799 --TPFGFQ----------------------------N-E------DRT----LWEA------------TSTYVEMSPFMS 825 (953)
Q Consensus 799 --~~~~~~----------------------------~-~------~~~----~~~~------------~~~~~~~sp~~~ 825 (953)
.+.... . . ... .|.. ...+...+....
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (275)
T 1a88_A 131 DTNPDGLPLEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDD 210 (275)
T ss_dssp TTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHH
T ss_pred ccCcccCCHHHHHHHHHHHhhhHHHHHHhhhccccccccCcccccCHHHHHHHHHHhhhcchHhHHHHHhhhhhcccccc
Confidence 000000 0 0 000 0000 000111122234
Q ss_pred cCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 826 ~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
+.++++|+|+++|++|..+| +....+.+..+. ..+++++++++||... .+..+.+.+.+.+||.
T Consensus 211 l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 274 (275)
T 1a88_A 211 LKRIDVPVLVAHGTDDQVVP--YADAAPKSAELL---ANATLKSYEGLPHGML-STHPEVLNPDLLAFVK 274 (275)
T ss_dssp HHHCCSCEEEEEETTCSSSC--STTTHHHHHHHS---TTEEEEEETTCCTTHH-HHCHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEecCCCccCC--cHHHHHHHHhhC---CCcEEEEcCCCCccHH-HhCHHHHHHHHHHHhh
Confidence 56789999999999999988 765544443332 2479999999999864 4567788888999985
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-14 Score=159.59 Aligned_cols=289 Identities=10% Similarity=0.069 Sum_probs=166.6
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+..++|||||++||..+... ..--...|++++...+....-...........+..++|+||++.|+.+
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~---~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s------- 112 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLS---SRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVAS------- 112 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSS---SSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEE-------
T ss_pred CCEEEEEECCCCCEEEEEcCCC---CccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEE-------
Confidence 4688999999999998865311 111145788998877654321111100111226789999999877644
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-----eCCC-CcccccccCC
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-----IGPP-AVYTSLDPSP 341 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-----l~~~-~~~~~~~~Sp 341 (953)
..+.|.++|+ +++... .... ..+..++|||
T Consensus 113 -------------------------------------------~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 149 (357)
T 4g56_B 113 -------------------------------------------DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS 149 (357)
T ss_dssp -------------------------------------------TTSCEEEC--------CCCCEEECCCSSCEEEEEECS
T ss_pred -------------------------------------------CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC
Confidence 1134555566 553221 1122 6688899999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
||++|+..+.+. .|.+||+.++... .+..+. ..+..++|+|+++.++...
T Consensus 150 dg~~l~sgs~dg-------------~v~iwd~~~~~~~~~~~~h~-------------~~v~~v~~s~~~~~~~~s~--- 200 (357)
T 4g56_B 150 DGTQAVSGGKDF-------------SVKVWDLSQKAVLKSYNAHS-------------SEVNCVAACPGKDTIFLSC--- 200 (357)
T ss_dssp SSSEEEEEETTS-------------CEEEEETTTTEEEEEECCCS-------------SCEEEEEECTTCSSCEEEE---
T ss_pred CCCEEEEEeCCC-------------eEEEEECCCCcEEEEEcCCC-------------CCEEEEEEccCCCceeeee---
Confidence 999998877443 8999999866543 333221 3346789999998665541
Q ss_pred cCCCcccccccCCeEEEEecCCCCCCCceEEe--ecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEe
Q 002209 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (953)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~--~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 498 (953)
+..+.|.+||+ .++.....+. .....+..++|+|++..++.....+. .|.++|+.++ +....
T Consensus 201 ---------~~dg~v~~wd~--~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~---~i~~wd~~~~--~~~~~ 264 (357)
T 4g56_B 201 ---------GEDGRILLWDT--RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG---NVSLVNIKNP--DSAQT 264 (357)
T ss_dssp ---------ETTSCEEECCT--TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS---CEEEEESSCG--GGCEE
T ss_pred ---------ccCCceEEEEC--CCCceeeeeeeccccccccchhhhhcccceEEEeeccc---ceeEEECCCC--cEeEE
Confidence 33457889986 2222222222 23344567899999766554443332 4566676664 33333
Q ss_pred ecCCCccccCCCCCCCeEeccCCCE-EEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCccccee
Q 002209 499 FDRSSEDVYSDPGSPMMRRTSTGTY-VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 577 (953)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~SpDG~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~ 577 (953)
.......+.. ++|+|||+. |+....+ ..|++||+.+++..+.....+.
T Consensus 265 ~~~~~~~v~~------l~~sp~~~~~lasgs~D---------------------~~i~iwd~~~~~~~~~~~H~~~---- 313 (357)
T 4g56_B 265 SAVHSQNITG------LAYSYHSSPFLASISED---------------------CTVAVLDADFSEVFRDLSHRDF---- 313 (357)
T ss_dssp ECCCSSCEEE------EEECSSSSCCEEEEETT---------------------SCEEEECTTSCEEEEECCCSSC----
T ss_pred EeccceeEEE------EEEcCCCCCEEEEEeCC---------------------CEEEEEECCCCcEeEECCCCCC----
Confidence 3333333333 789999864 5544421 1399999999887665543322
Q ss_pred eeEeeccCCccccccc-cCCEEEEEEecCCCCceEEEEECCC
Q 002209 578 TTVALMSDQTEGDLYL-NQLKILTSKESKTENTQYYIQSWPD 618 (953)
Q Consensus 578 ~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~p~~l~~~~~~~ 618 (953)
+.. .+|+| |++.|+ +.+.. ..|+++++.+
T Consensus 314 -V~~-------vafsP~d~~~l~-s~s~D---g~v~iW~~~~ 343 (357)
T 4g56_B 314 -VTG-------VAWSPLDHSKFT-TVGWD---HKVLHHHLPS 343 (357)
T ss_dssp -EEE-------EEECSSSTTEEE-EEETT---SCEEEEECC-
T ss_pred -EEE-------EEEeCCCCCEEE-EEcCC---CeEEEEECCC
Confidence 222 46888 666554 44332 3478888754
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-14 Score=158.97 Aligned_cols=317 Identities=9% Similarity=0.031 Sum_probs=191.3
Q ss_pred eeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEE
Q 002209 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (953)
Q Consensus 179 ~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l 258 (953)
...+.++. ..+...+|||||+.|+.... ...|.++++.+++........... +..++|+|||+.|
T Consensus 25 ~~~l~~h~--~~v~~~~~s~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l 89 (369)
T 3zwl_B 25 AIKLTGHE--RPLTQVKYNKEGDLLFSCSK---------DSSASVWYSLNGERLGTLDGHTGT----IWSIDVDCFTKYC 89 (369)
T ss_dssp EEEEECCS--SCEEEEEECTTSCEEEEEES---------SSCEEEEETTTCCEEEEECCCSSC----EEEEEECTTSSEE
T ss_pred cEEEEEee--ceEEEEEEcCCCCEEEEEeC---------CCEEEEEeCCCchhhhhhhhcCCc----EEEEEEcCCCCEE
Confidence 34444433 46899999999999988552 557888898887765444323222 7789999999998
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCCCcccc
Q 002209 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPPAVYTS 336 (953)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~~~~~~ 336 (953)
+... ..+.|.++++ +++... +.....+..
T Consensus 90 ~s~~-------------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~v~~ 120 (369)
T 3zwl_B 90 VTGS-------------------------------------------------ADYSIKLWDVSNGQCVATWKSPVPVKR 120 (369)
T ss_dssp EEEE-------------------------------------------------TTTEEEEEETTTCCEEEEEECSSCEEE
T ss_pred EEEe-------------------------------------------------CCCeEEEEECCCCcEEEEeecCCCeEE
Confidence 8661 2246778888 665433 333377889
Q ss_pred cccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccc--cCccceeeccCCCCc
Q 002209 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVR--KGMRSINWRSDKPST 413 (953)
Q Consensus 337 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~--~~~~~~~wspDg~~i 413 (953)
+.|+|||+.|+....+. ....+.|.+|++.... ...+....... ........ ..+..++|+|||+.+
T Consensus 121 ~~~~~~~~~l~~~~~~~--------~~~~g~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l 190 (369)
T 3zwl_B 121 VEFSPCGNYFLAILDNV--------MKNPGSINIYEIERDSATHELTKVSEEP--IHKIITHEGLDAATVAGWSTKGKYI 190 (369)
T ss_dssp EEECTTSSEEEEEECCB--------TTBCCEEEEEEEEECTTTCCEEEECSSC--SEEEECCTTCCCEEEEEECGGGCEE
T ss_pred EEEccCCCEEEEecCCc--------cCCCCEEEEEEecCCccceeecccccce--eeeccCCcCccceeEEEEcCCCCEE
Confidence 99999999999887431 0112489999987432 11111100000 00000111 145678999999977
Q ss_pred eEEEEeccCCCcccccccCCeEEEEecCCCCCCC-ceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCC
Q 002209 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKD 492 (953)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~-~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~ 492 (953)
+.. +..+.|.+||+ .++.. ...+..+...+..+.|+|||+.|+....++ .|+++|+.++
T Consensus 191 ~~~-------------~~dg~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~v~d~~~~- 250 (369)
T 3zwl_B 191 IAG-------------HKDGKISKYDV--SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDT----NSFLVDVSTL- 250 (369)
T ss_dssp EEE-------------ETTSEEEEEET--TTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTC-
T ss_pred EEE-------------cCCCEEEEEEC--CCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCc----eEEEEECCCC-
Confidence 665 44568999996 22122 233455566778899999999998876443 5777787774
Q ss_pred CCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCc
Q 002209 493 VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (953)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~ 572 (953)
+........ ..+.. +.|+|+|++++....+. ...++.... ......+.+||+.+++.........
T Consensus 251 -~~~~~~~~~-~~~~~------~~~~~~~~~l~~~~~~~---~~~~~~~~~----~~~~~~i~~~d~~~~~~~~~~~~~~ 315 (369)
T 3zwl_B 251 -QVLKKYETD-CPLNT------AVITPLKEFIILGGGQE---AKDVTTTSA----NEGKFEARFYHKIFEEEIGRVQGHF 315 (369)
T ss_dssp -CEEEEEECS-SCEEE------EEECSSSSEEEEEECCC--------------------CEEEEEETTTCCEEEEEECCS
T ss_pred -ceeeeecCC-CCcee------EEecCCCceEEEeecCC---CceEEEEec----CCCcceeEEEecCCCcchhheeccc
Confidence 233333211 11222 78999999999886432 122221111 1123468999998887766554332
Q ss_pred ccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002209 573 EKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (953)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g 619 (953)
. .+. ..+|+||++.++..... ..+.++++.++
T Consensus 316 ~----~v~-------~~~~s~~~~~l~s~~~d----g~v~iw~~~~~ 347 (369)
T 3zwl_B 316 G----PLN-------TVAISPQGTSYASGGED----GFIRLHHFEKS 347 (369)
T ss_dssp S----CEE-------EEEECTTSSEEEEEETT----SEEEEEEECHH
T ss_pred C----cEE-------EEEECCCCCEEEEEcCC----CeEEEEECccc
Confidence 1 112 24689999876644332 45888887654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-14 Score=183.46 Aligned_cols=279 Identities=12% Similarity=0.060 Sum_probs=177.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++||..+.+ +.|.||++.+ + .....+.. +..
T Consensus 617 ~v~~~~~s~~~~~l~s~~~d---------------------------------~~i~vw~~~~-~--~~~~~~~~--h~~ 658 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCGAD---------------------------------KTLQVFKAET-G--EKLLDIKA--HED 658 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SCEEEEETTT-C--CEEEEECC--CSS
T ss_pred cEEEEEECCCCCEEEEEeCC---------------------------------CeEEEEECCC-C--CEEEEecc--CCC
Confidence 46678999999999988765 3679999854 2 22334433 234
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCe--EEEEEecCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST--LLVCTIPLLRG 267 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~--~l~~~~~~~~~ 267 (953)
.+...+|||||++|+... ....|.++|+.+++........... +..+.|+|++. .++...
T Consensus 659 ~v~~~~~s~~~~~l~s~~---------~d~~v~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~sg~----- 720 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCS---------ADKKVKIWDSATGKLVHTYDEHSEQ----VNCCHFTNKSNHLLLATGS----- 720 (1249)
T ss_dssp CEEEEEECTTSSEEEEEE---------TTSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSSSCCEEEEEE-----
T ss_pred CEEEEEEecCCCEEEEEe---------CCCeEEEEECCCCceEEEEcCCCCc----EEEEEEecCCCceEEEEEe-----
Confidence 789999999999998865 2567999999988765443333322 77899999654 444330
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-CcccccccCCCCc
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEK 344 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDG~ 344 (953)
..+.|.++|+ +++. ..+... ..+..++|+|||+
T Consensus 721 --------------------------------------------~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~ 756 (1249)
T 3sfz_A 721 --------------------------------------------NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE 756 (1249)
T ss_dssp --------------------------------------------TTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT
T ss_pred --------------------------------------------CCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC
Confidence 2245778888 6653 344444 7788999999999
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
.|+..+.++ .|.+||+..+.. ..+...................+..++|+|||+.++..
T Consensus 757 ~l~s~s~dg-------------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~------- 816 (1249)
T 3sfz_A 757 LLASCSADG-------------TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA------- 816 (1249)
T ss_dssp EEEEEESSS-------------EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE-------
T ss_pred EEEEEECCC-------------eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE-------
Confidence 999887443 899999985543 33322111100000001112245678999999977765
Q ss_pred CcccccccCCeEEEEecCCCCCCCceEEe-ecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCC
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~~~l~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 502 (953)
. .+.+.+|++ .++.....+. .+...+..+.|+|+|+.++....++ .+.+++..++ .........
T Consensus 817 ------~-~~~v~~~d~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg----~v~vwd~~~~--~~~~~~~~h 881 (1249)
T 3sfz_A 817 ------A-KNKVLLFDI--HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQY----CVELWNIDSR--LKVADCRGH 881 (1249)
T ss_dssp ------E-TTEEEEEET--TTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSS----CEEEEETTTT--EEEEEECCC
T ss_pred ------c-CCcEEEEEe--cCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCC----eEEEEEcCCC--ceeeecCCC
Confidence 1 457889986 3333333332 4556678899999999988875443 3555565553 223333333
Q ss_pred CccccCCCCCCCeEeccCCCEEEEEee
Q 002209 503 SEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 503 ~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
...+.. +.|+|||++++....
T Consensus 882 ~~~v~~------v~~spdg~~l~s~s~ 902 (1249)
T 3sfz_A 882 LSWVHG------VMFSPDGSSFLTASD 902 (1249)
T ss_dssp SSCEEE------EEECTTSSEEEEEET
T ss_pred ccceEE------EEECCCCCEEEEEeC
Confidence 333333 789999998887653
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-15 Score=158.51 Aligned_cols=214 Identities=15% Similarity=0.221 Sum_probs=137.6
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
+...+|.+++...+-|+. .|.||++||.+... ..| ......|+++||.|++ +|.
T Consensus 4 ~~~~~g~~l~y~~~g~~~--------~~~vvllHG~~~~~-----------~~w----~~~~~~L~~~g~~vi~---~D~ 57 (276)
T 1zoi_A 4 VTTKDGVQIFYKDWGPRD--------APVIHFHHGWPLSA-----------DDW----DAQLLFFLAHGYRVVA---HDR 57 (276)
T ss_dssp EECTTSCEEEEEEESCTT--------SCEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEE---ECC
T ss_pred EECCCCcEEEEEecCCCC--------CCeEEEECCCCcch-----------hHH----HHHHHHHHhCCCEEEE---ecC
Confidence 456788888877764421 36799999963211 011 2345668889999999 555
Q ss_pred CCCCChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCcccEEEEcccCCCCCC--
Q 002209 724 IGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTL-- 798 (953)
Q Consensus 724 ~G~G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~d~~~-- 798 (953)
+|+|.+... ........+|+.++++.+ +.+++.|+||||||.+++.+++.+ |++++++|++++......
T Consensus 58 ~G~G~S~~~~~~~~~~~~~~d~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~ 131 (276)
T 1zoi_A 58 RGHGRSSQVWDGHDMDHYADDVAAVVAHL------GIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQT 131 (276)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCCCSCCBCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCCCcccccc
Confidence 788887542 123567778888887776 235799999999999999988877 899999999886421100
Q ss_pred --CCcCcc----------------------------c-c-----c-ch----hhhh-----H-------HHHHhcCcccc
Q 002209 799 --TPFGFQ----------------------------N-E-----D-RT----LWEA-----T-------STYVEMSPFMS 825 (953)
Q Consensus 799 --~~~~~~----------------------------~-~-----~-~~----~~~~-----~-------~~~~~~sp~~~ 825 (953)
.+.... . . . .. .+.. . ..+...+....
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (276)
T 1zoi_A 132 PGNPGGLPKSVFDGFQAQVASNRAQFYRDVPAGPFYGYNRPGVEASEGIIGNWWRQGMIGSAKAHYDGIVAFSQTDFTED 211 (276)
T ss_dssp SSCTTSBCHHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHH
T ss_pred ccccccccHHHHHHHHHHHHHhHHHHHHHhhhccccccccccccccHHHHHHHHhhhhhhhHHHHHHHHHHhcccchhhh
Confidence 000000 0 0 0 00 0000 0 00011122234
Q ss_pred cCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 826 ~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
+.++++|+|+++|++|..+| +....+.+..+. ...+++++|++||... .++.+.+.+.+.+||.
T Consensus 212 l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 275 (276)
T 1zoi_A 212 LKGIQQPVLVMHGDDDQIVP--YENSGVLSAKLL---PNGALKTYKGYPHGMP-TTHADVINADLLAFIR 275 (276)
T ss_dssp HHHCCSCEEEEEETTCSSSC--STTTHHHHHHHS---TTEEEEEETTCCTTHH-HHTHHHHHHHHHHHHT
T ss_pred ccccCCCEEEEEcCCCcccC--hHHHHHHHHhhC---CCceEEEcCCCCCchh-hhCHHHHHHHHHHHhc
Confidence 56789999999999999988 775444443332 2478999999999864 4567788888888874
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-14 Score=158.69 Aligned_cols=267 Identities=11% Similarity=0.121 Sum_probs=167.7
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+.|++|++.+ +....+........+....|+|||+.|+.... ...|.++++.+++...........
T Consensus 113 ~~v~lw~~~~----~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~- 178 (401)
T 4aez_A 113 RNVYVWNADS----GSVSALAETDESTYVASVKWSHDGSFLSVGLG---------NGLVDIYDVESQTKLRTMAGHQAR- 178 (401)
T ss_dssp TEEEEEETTT----CCEEEEEECCTTCCEEEEEECTTSSEEEEEET---------TSCEEEEETTTCCEEEEECCCSSC-
T ss_pred CeEEEeeCCC----CcEeEeeecCCCCCEEEEEECCCCCEEEEECC---------CCeEEEEECcCCeEEEEecCCCCc-
Confidence 3689999854 33333332333447899999999999988552 557888898887755443322222
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
+..+.| +++.|+... ..+.|.++|+
T Consensus 179 ---v~~~~~--~~~~l~~~~-------------------------------------------------~dg~i~i~d~~ 204 (401)
T 4aez_A 179 ---VGCLSW--NRHVLSSGS-------------------------------------------------RSGAIHHHDVR 204 (401)
T ss_dssp ---EEEEEE--ETTEEEEEE-------------------------------------------------TTSEEEEEETT
T ss_pred ---eEEEEE--CCCEEEEEc-------------------------------------------------CCCCEEEEecc
Confidence 667888 456666551 2246777777
Q ss_pred CC--ceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCcccccc
Q 002209 322 DG--TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSV 397 (953)
Q Consensus 322 ~g--~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~ 397 (953)
.+ ....+... ..+..++|+|||+.|+..+.++ .|.+||+..+.. ..+..+.
T Consensus 205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-------------~v~iwd~~~~~~~~~~~~~~------------ 259 (401)
T 4aez_A 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN-------------VVQIWDARSSIPKFTKTNHN------------ 259 (401)
T ss_dssp SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-------------CEEEEETTCSSEEEEECCCS------------
T ss_pred cCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC-------------eEEEccCCCCCccEEecCCc------------
Confidence 33 23344444 7788999999999999887443 899999986443 3333221
Q ss_pred ccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecc
Q 002209 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 398 ~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
..+..++|+|+|+.++..... +..+.+.+||+ ..++..........+..+.|+|||+.|+......
T Consensus 260 -~~v~~~~~~p~~~~ll~~~~g----------s~d~~i~i~d~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~ 325 (401)
T 4aez_A 260 -AAVKAVAWCPWQSNLLATGGG----------TMDKQIHFWNA---ATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFP 325 (401)
T ss_dssp -SCCCEEEECTTSTTEEEEECC----------TTTCEEEEEET---TTCCEEEEEECSSCEEEEEECSSSSEEEEEECTT
T ss_pred -ceEEEEEECCCCCCEEEEecC----------CCCCEEEEEEC---CCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecC
Confidence 345689999999887775110 13568999996 4444444445556678899999999998875323
Q ss_pred cCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEE
Q 002209 478 TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLF 557 (953)
Q Consensus 478 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 557 (953)
.+ .+.+++..++..............+.. +.|+|||++|+....+ ..|.+|
T Consensus 326 dg--~i~v~~~~~~~~~~~~~~~~h~~~v~~------~~~s~dg~~l~s~~~d---------------------g~i~iw 376 (401)
T 4aez_A 326 DN--NLSIWSYSSSGLTKQVDIPAHDTRVLY------SALSPDGRILSTAASD---------------------ENLKFW 376 (401)
T ss_dssp TC--EEEEEEEETTEEEEEEEEECCSSCCCE------EEECTTSSEEEEECTT---------------------SEEEEE
T ss_pred CC--cEEEEecCCccceeEEEecCCCCCEEE------EEECCCCCEEEEEeCC---------------------CcEEEE
Confidence 33 344444444211111112223232332 7899999999877532 249999
Q ss_pred ECCCCceE
Q 002209 558 DINTGSKE 565 (953)
Q Consensus 558 d~~~~~~~ 565 (953)
|+.+++..
T Consensus 377 ~~~~~~~~ 384 (401)
T 4aez_A 377 RVYDGDHV 384 (401)
T ss_dssp ECCC----
T ss_pred ECCCCccc
Confidence 99877643
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-15 Score=156.15 Aligned_cols=200 Identities=12% Similarity=0.075 Sum_probs=129.6
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh--hhHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAV 747 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~~~ 747 (953)
.|.||++||..... ..| ......|+++||.|++ .|.+|+|.+.... .......+|+.+++
T Consensus 16 ~~~vvllHG~~~~~-----------~~~----~~~~~~L~~~g~~vi~---~D~~GhG~s~~~~~~~~~~~~~~d~~~~~ 77 (247)
T 1tqh_A 16 ERAVLLLHGFTGNS-----------ADV----RMLGRFLESKGYTCHA---PIYKGHGVPPEELVHTGPDDWWQDVMNGY 77 (247)
T ss_dssp SCEEEEECCTTCCT-----------HHH----HHHHHHHHHTTCEEEE---CCCTTSSSCHHHHTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCh-----------HHH----HHHHHHHHHCCCEEEe---cccCCCCCCHHHhcCCCHHHHHHHHHHHH
Confidence 36788999953110 011 1344567789999999 5557788664321 13455667888888
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC-c--Ccc---c-------ccch-hhhh
Q 002209 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-F--GFQ---N-------EDRT-LWEA 813 (953)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~-~--~~~---~-------~~~~-~~~~ 813 (953)
+++.+.+ .+++.|+||||||.+++.++.++| ++++|+.++........ . .+. . .... ....
T Consensus 78 ~~l~~~~---~~~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (247)
T 1tqh_A 78 EFLKNKG---YEKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQE 152 (247)
T ss_dssp HHHHHHT---CCCEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHcC---CCeEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHHHHHHHHHhhcccccchHHHHhh
Confidence 8887654 258999999999999999999997 88888655432210000 0 000 0 0000 0000
Q ss_pred -----------HHHHHh--cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc
Q 002209 814 -----------TSTYVE--MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880 (953)
Q Consensus 814 -----------~~~~~~--~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 880 (953)
...+.. .+....+.++++|+|++||++|..+| ++.++++++.++. ..++++++|++||.....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p--~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~e 228 (247)
T 1tqh_A 153 MEKFKQTPMKTLKALQELIADVRDHLDLIYAPTFVVQARHDEMIN--PDSANIIYNEIES--PVKQIKWYEQSGHVITLD 228 (247)
T ss_dssp HHHHTTSCCTTHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSC--TTHHHHHHHHCCC--SSEEEEEETTCCSSGGGS
T ss_pred hhcccCCCHHHHHHHHHHHHHHHhhcccCCCCEEEEecCCCCCCC--cchHHHHHHhcCC--CceEEEEeCCCceeeccC
Confidence 000000 01223567789999999999999998 8888888777643 247999999999987543
Q ss_pred ccHHHHHHHHHHHHHH
Q 002209 881 ESIMHVLWETDRWLQK 896 (953)
Q Consensus 881 ~~~~~~~~~i~~fl~~ 896 (953)
+..+.+.+.+.+||++
T Consensus 229 ~~~~~~~~~i~~Fl~~ 244 (247)
T 1tqh_A 229 QEKDQLHEDIYAFLES 244 (247)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh
Confidence 3467888999999976
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8.8e-15 Score=167.02 Aligned_cols=223 Identities=12% Similarity=0.046 Sum_probs=147.8
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
+...+.+.+.+|..++.... + ..|+||++||++... ..| ......|+++||.|+.
T Consensus 2 p~i~~~~~~~dG~~l~y~~~---G-------~gp~VV~lHG~~~~~-----------~~~----~~l~~~La~~Gy~Vi~ 56 (456)
T 3vdx_A 2 PFITVGQENSTSIDLYYEDH---G-------TGVPVVLIHGFPLSG-----------HSW----ERQSAALLDAGYRVIT 56 (456)
T ss_dssp CEEEEEEETTEEEEEEEEEE---S-------SSEEEEEECCTTCCG-----------GGG----TTHHHHHHHHTEEEEE
T ss_pred CeEeecccccCCeEEEEEEe---C-------CCCEEEEECCCCCcH-----------HHH----HHHHHHHHHCCcEEEE
Confidence 44556677788888875443 1 258899999964221 112 1345678899999999
Q ss_pred cCCCCCCCCCChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCcccEEEEcccCC
Q 002209 718 GPTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAY 794 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~ 794 (953)
+| .+|+|.+... .......++|+.++++++ +.++++|+||||||.+++.+++.+ |++++++|++++..
T Consensus 57 ~D---~rG~G~S~~~~~~~s~~~~a~dl~~~l~~l------~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~ 127 (456)
T 3vdx_A 57 YD---RRGFGQSSQPTTGYDYDTFAADLNTVLETL------DLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLE 127 (456)
T ss_dssp EC---CTTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCC
T ss_pred EC---CCCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCcc
Confidence 55 4677777543 224567788888888876 346899999999999998888876 89999999999865
Q ss_pred CCCCCCcCccccc--chh--------------h------------------hhHHHHH---------------------h
Q 002209 795 NRTLTPFGFQNED--RTL--------------W------------------EATSTYV---------------------E 819 (953)
Q Consensus 795 d~~~~~~~~~~~~--~~~--------------~------------------~~~~~~~---------------------~ 819 (953)
............. ... + .....+. .
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (456)
T 3vdx_A 128 PFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWY 207 (456)
T ss_dssp SCCBCCSSCCSCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTTTTSBTTTBCHHHHHHHHHHHHTSCTTHHHHGGGGTT
T ss_pred cccccccccccccchHHHHHHHHHhhhccchHHHHHHHHHHhcccccccccccHHHHHHHhhhccccchhhhhhhhhhhh
Confidence 4221110000000 000 0 0000000 0
Q ss_pred cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 820 ~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
.+....+.++++|+|+++|++|..+| +....+.+.... ..+++++++++||.+. .+....+.+.+.+||++++.
T Consensus 208 ~d~~~~l~~i~~PvLiI~G~~D~~vp--~~~~~~~l~~~~---~~~~~~~i~gagH~~~-~e~p~~v~~~I~~FL~~~l~ 281 (456)
T 3vdx_A 208 TDFRADIPRIDVPALILHGTGDRTLP--IENTARVFHKAL---PSAEYVEVEGAPHGLL-WTHAEEVNTALLAFLAKALE 281 (456)
T ss_dssp CCCTTTSTTCCSCCEEEEETTCSSSC--GGGTHHHHHHHC---TTSEEEEETTCCSCTT-TTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhCCCCEEEEEeCCCCCcC--HHHHHHHHHHHC---CCceEEEeCCCCCcch-hhCHHHHHHHHHHHHHHhhc
Confidence 12234467789999999999999998 774444433332 2368999999999864 46788899999999999875
Q ss_pred C
Q 002209 900 S 900 (953)
Q Consensus 900 ~ 900 (953)
.
T Consensus 282 ~ 282 (456)
T 3vdx_A 282 A 282 (456)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-14 Score=155.36 Aligned_cols=271 Identities=10% Similarity=0.060 Sum_probs=165.0
Q ss_pred CCCCcee-----cC-CCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCC---Cc-e
Q 002209 110 PLPALSF-----SP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL---GQ-E 179 (953)
Q Consensus 110 ~~~~~~~-----SP-DG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~---~~-~ 179 (953)
.+..++| +| ||++|+..+.+ +.|.||++...... +. .
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D---------------------------------~~v~iWd~~~~~~~~~~~~~~ 69 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRD---------------------------------KTVMIWKLYEEEQNGYFGIPH 69 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETT---------------------------------SCEEEEEECSSCCSSBSEEEE
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCC---------------------------------CEEEEEECCcCCccccccccc
Confidence 3556667 66 99999988875 36789998532111 11 1
Q ss_pred eeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEE
Q 002209 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (953)
Q Consensus 180 ~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~ 259 (953)
..+.++ ...+....|+|||+.|+... ....|.++|+.+++........... +..++|+|||+.|+
T Consensus 70 ~~l~~h--~~~V~~~~~~~~~~~l~s~s---------~D~~v~lwd~~~~~~~~~~~~h~~~----v~~v~~sp~~~~l~ 134 (343)
T 2xzm_R 70 KALTGH--NHFVSDLALSQENCFAISSS---------WDKTLRLWDLRTGTTYKRFVGHQSE----VYSVAFSPDNRQIL 134 (343)
T ss_dssp EEECCC--SSCEEEEEECSSTTEEEEEE---------TTSEEEEEETTSSCEEEEEECCCSC----EEEEEECSSTTEEE
T ss_pred chhccC--CCceEEEEECCCCCEEEEEc---------CCCcEEEEECCCCcEEEEEcCCCCc----EEEEEECCCCCEEE
Confidence 223332 23688899999999888754 2568888999887754333222222 77899999999988
Q ss_pred EEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeC---CC-Ccc
Q 002209 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG---PP-AVY 334 (953)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~---~~-~~~ 334 (953)
... ..+.|.++|+ ......+. .. ..+
T Consensus 135 s~~-------------------------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 135 SAG-------------------------------------------------AEREIKLWNILGECKFSSAEKENHSDWV 165 (343)
T ss_dssp EEE-------------------------------------------------TTSCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred EEc-------------------------------------------------CCCEEEEEeccCCceeeeecccCCCcee
Confidence 661 1234556666 33222222 12 556
Q ss_pred cccccCCCC----------cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccce
Q 002209 335 TSLDPSPDE----------KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSI 404 (953)
Q Consensus 335 ~~~~~SpDG----------~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~ 404 (953)
..++|+|++ .+|+..+.+ +.|.+||..+.....+..+. ..+..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~h~-------------~~v~~~ 219 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWD-------------GRLKVWNTNFQIRYTFKAHE-------------SNVNHL 219 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETT-------------SEEEEEETTTEEEEEEECCS-------------SCEEEE
T ss_pred eeeeeccccccccccCCCCCEEEEEcCC-------------CEEEEEcCCCceeEEEcCcc-------------ccceEE
Confidence 778889887 566666533 48999996654444443322 345679
Q ss_pred eeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEE
Q 002209 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (953)
Q Consensus 405 ~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~ 484 (953)
+|+|||+.|+.. +..+.|.+||+ ...............+..++|+||++.|+... ++. .++|
T Consensus 220 ~~s~~g~~l~sg-------------s~dg~v~iwd~--~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~-d~~--v~iw 281 (343)
T 2xzm_R 220 SISPNGKYIATG-------------GKDKKLLIWDI--LNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQG--VKIF 281 (343)
T ss_dssp EECTTSSEEEEE-------------ETTCEEEEEES--SCCSSCSEEEECSSCEEEEEECSSSCEEEEEE-SSC--EEEE
T ss_pred EECCCCCEEEEE-------------cCCCeEEEEEC--CCCcccceeecCCCcEEEEEECCCCCEEEEEC-CCC--EEEE
Confidence 999999977665 45668999996 23333333333344577899999998776543 321 3555
Q ss_pred EEcCCCCCCCcE-EeecC----------CCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 485 VISPGSKDVAPR-ILFDR----------SSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 485 ~~d~~~~~~~~~-~~~~~----------~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
++.++..... .+... ....+.. ++|+|||++|+....
T Consensus 282 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~sp~g~~l~sg~~ 329 (343)
T 2xzm_R 282 --NLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTS------LAWNALGKKLFAGFT 329 (343)
T ss_dssp --ESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEE------EEECSSSCCEEEEET
T ss_pred --EeCCCCCCceEEeecCcchhhhhhcCCCCceEE------EEECCCCCeEEEecC
Confidence 4444321111 11100 1111111 789999999988763
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=9e-16 Score=172.77 Aligned_cols=234 Identities=13% Similarity=0.110 Sum_probs=153.6
Q ss_pred EEcCCCcEEEEEEEcCCCC-CCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH----HcCc---EE
Q 002209 644 YQRKDGVQLSATLYLPPGY-DPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL----ARGF---AI 715 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~-~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la----~~G~---~V 715 (953)
+...||..+.+..+.|.+. .+...++.|+||++||.+.... .|. .....|+ ..|| .|
T Consensus 25 ~~~~dg~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~~~-----------~~~----~~~~~L~~~~~~~G~~~~~v 89 (398)
T 2y6u_A 25 LCATDRLELTYDVYTSAERQRRSRTATRLNLVFLHGSGMSKV-----------VWE----YYLPRLVAADAEGNYAIDKV 89 (398)
T ss_dssp SSTTCCCEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCCGG-----------GGG----GGGGGSCCCBTTTTEEEEEE
T ss_pred ccCCCceEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCcHH-----------HHH----HHHHHHHHhhhhcCcceeEE
Confidence 4567999999999988641 0111234689999999642211 111 2233455 3489 99
Q ss_pred EEcCCCCCCCCCChhhh-------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEE
Q 002209 716 LGGPTTPIIGEGDEEAN-------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~~-------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (953)
++ ++.+|+|.+... .......+.|+.++++.+.....+++.++.|+||||||.+++.++.++|++++++|
T Consensus 90 i~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv 166 (398)
T 2y6u_A 90 LL---IDQVNHGDSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLI 166 (398)
T ss_dssp EE---ECCTTSHHHHHHTTTTBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEE
T ss_pred EE---EcCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEE
Confidence 99 455688887543 12355667788777776532112344569999999999999999999999999999
Q ss_pred EcccCCCCCC--------CCcC---cc------------c--cc----------chhh-----hhHHHHHh---------
Q 002209 789 ARSGAYNRTL--------TPFG---FQ------------N--ED----------RTLW-----EATSTYVE--------- 819 (953)
Q Consensus 789 ~~~~~~d~~~--------~~~~---~~------------~--~~----------~~~~-----~~~~~~~~--------- 819 (953)
+++|...... .... .. . .. ...+ +..+.+..
T Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (398)
T 2y6u_A 167 LIEPVVITRKAIGAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGD 246 (398)
T ss_dssp EESCCCSCCCCCSCCCTTCCTTCCCCCHHHHHHHHHTCCCEESSHHHHHHHHHHTSTTTTSCHHHHHHHHHHHEEC----
T ss_pred EeccccccccccccccccccccccccchhhHHHhhhhccccCCCHHHHHHHhhcCcccccCCHHHHHHHHHhcCcccccc
Confidence 9998765311 0000 00 0 00 0000 00011110
Q ss_pred ---------------------------cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC
Q 002209 820 ---------------------------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (953)
Q Consensus 820 ---------------------------~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 872 (953)
......+.++++|+|+++|++|..+| +..+.++++.+. .++++++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~~~--~~~~~~l~~~~~----~~~~~~~~~ 320 (398)
T 2y6u_A 247 DEDGGPVRTKMEQAQNLLCYMNMQTFAPFLISNVKFVRKRTIHIVGARSNWCP--PQNQLFLQKTLQ----NYHLDVIPG 320 (398)
T ss_dssp ----CCEEESSCHHHHHHTTSCGGGTHHHHHHHGGGCCSEEEEEEETTCCSSC--HHHHHHHHHHCS----SEEEEEETT
T ss_pred ccCCCceEecCCchhhhhhhcccccchHHHHHhccccCCCEEEEEcCCCCCCC--HHHHHHHHHhCC----CceEEEeCC
Confidence 00123456789999999999999998 888888777664 468999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHHhccCCC
Q 002209 873 ESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 873 ~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (953)
+||... .+....+.+.+.+||.+++....
T Consensus 321 ~gH~~~-~e~p~~~~~~i~~fl~~~~~~~~ 349 (398)
T 2y6u_A 321 GSHLVN-VEAPDLVIERINHHIHEFVLTSP 349 (398)
T ss_dssp CCTTHH-HHSHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccch-hcCHHHHHHHHHHHHHHHHHhHH
Confidence 999763 45677889999999999986543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.8e-15 Score=159.25 Aligned_cols=233 Identities=11% Similarity=0.080 Sum_probs=159.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|+|++..++..+.+ +.|.+||+.+ + ...+.+... ..
T Consensus 82 ~v~~~~~~~~~~~l~s~s~D---------------------------------~~i~lWd~~~-~--~~~~~~~~~--~~ 123 (321)
T 3ow8_A 82 GVVSVDISHTLPIAASSSLD---------------------------------AHIRLWDLEN-G--KQIKSIDAG--PV 123 (321)
T ss_dssp CEEEEEECSSSSEEEEEETT---------------------------------SEEEEEETTT-T--EEEEEEECC--TT
T ss_pred CEEEEEECCCCCEEEEEeCC---------------------------------CcEEEEECCC-C--CEEEEEeCC--Cc
Confidence 45677899999998888765 3689999853 2 122333322 23
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....|||||+.|+... ....|.++++++++........... +..++|+|||+.|+...
T Consensus 124 ~~~~~~~spdg~~l~~g~---------~dg~v~i~~~~~~~~~~~~~~~~~~----v~~~~~spdg~~lasg~------- 183 (321)
T 3ow8_A 124 DAWTLAFSPDSQYLATGT---------HVGKVNIFGVESGKKEYSLDTRGKF----ILSIAYSPDGKYLASGA------- 183 (321)
T ss_dssp CCCCEEECTTSSEEEEEC---------TTSEEEEEETTTCSEEEEEECSSSC----EEEEEECTTSSEEEEEE-------
T ss_pred cEEEEEECCCCCEEEEEc---------CCCcEEEEEcCCCceeEEecCCCce----EEEEEECCCCCEEEEEc-------
Confidence 577899999999998844 3567888999887654333222222 66899999999998761
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeCCC-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDG~~l 346 (953)
..+.|.++|+ +++.. .+... ..+..++|||||++|
T Consensus 184 ------------------------------------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l 221 (321)
T 3ow8_A 184 ------------------------------------------IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLL 221 (321)
T ss_dssp ------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEE
T ss_pred ------------------------------------------CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEE
Confidence 2245778888 77543 44444 678899999999999
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
+..+.+. .|.+||+..+. ...+..+. ..+..++|+|||+.++..
T Consensus 222 ~s~s~dg-------------~i~iwd~~~~~~~~~~~~h~-------------~~v~~~~~sp~~~~l~s~--------- 266 (321)
T 3ow8_A 222 VTASDDG-------------YIKIYDVQHANLAGTLSGHA-------------SWVLNVAFCPDDTHFVSS--------- 266 (321)
T ss_dssp EEECTTS-------------CEEEEETTTCCEEEEECCCS-------------SCEEEEEECTTSSEEEEE---------
T ss_pred EEEcCCC-------------eEEEEECCCcceeEEEcCCC-------------CceEEEEECCCCCEEEEE---------
Confidence 8877443 89999998544 33333322 334679999999976655
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEE
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 485 (953)
+..+.|.+||+ .++.....+..+...+..++|+|||+.|+..+.++. .+||.
T Consensus 267 ----s~D~~v~iwd~--~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~--i~vwd 318 (321)
T 3ow8_A 267 ----SSDKSVKVWDV--GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQE--IHIYD 318 (321)
T ss_dssp ----ETTSCEEEEET--TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCC--EEEEE
T ss_pred ----eCCCcEEEEeC--CCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCe--EEEEe
Confidence 44567899996 222223344556667788999999999987765442 35554
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-14 Score=155.96 Aligned_cols=282 Identities=14% Similarity=0.135 Sum_probs=158.2
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
.|++|.+.... ++.+.+... .......++|||||++|++....+ ..++...+|.++.++|+.+.+.......
T Consensus 28 ~i~~~~~d~~~--g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~---~~~~~v~~~~~~~~~g~~~~~~~~~~~~-- 99 (361)
T 3scy_A 28 GIYTFRFNEET--GESLPLSDA-EVANPSYLIPSADGKFVYSVNEFS---KDQAAVSAFAFDKEKGTLHLLNTQKTMG-- 99 (361)
T ss_dssp EEEEEEEETTT--CCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCS---STTCEEEEEEEETTTTEEEEEEEEECSS--
T ss_pred CEEEEEEeCCC--CCEEEeecc-cCCCCceEEECCCCCEEEEEEccC---CCCCcEEEEEEeCCCCcEEEeeEeccCC--
Confidence 57777773221 444444433 334677789999999998876421 1234556677887767776664432111
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-- 321 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-- 321 (953)
.....+++ ||+.|+++.. ..+.+.++++
T Consensus 100 ~~p~~~~~--dg~~l~~~~~------------------------------------------------~~~~v~~~~~~~ 129 (361)
T 3scy_A 100 ADPCYLTT--NGKNIVTANY------------------------------------------------SGGSITVFPIGQ 129 (361)
T ss_dssp SCEEEEEE--CSSEEEEEET------------------------------------------------TTTEEEEEEBCT
T ss_pred CCcEEEEE--CCCEEEEEEC------------------------------------------------CCCEEEEEEeCC
Confidence 00223444 8888887610 1234555665
Q ss_pred CCceeEeC-----CC----------CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-------EE
Q 002209 322 DGTVKEIG-----PP----------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-------VR 379 (953)
Q Consensus 322 ~g~~~~l~-----~~----------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-------~~ 379 (953)
+|....+. .. .....++|||||++|+++... ...+++|+++... ..
T Consensus 130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~------------~~~v~v~~~~~~~~~~~~~~l~ 197 (361)
T 3scy_A 130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG------------TDQIHKFNINPNANADNKEKFL 197 (361)
T ss_dssp TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTCCTTTCCCCE
T ss_pred CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC------------CCEEEEEEEcCCCCccccccee
Confidence 33332221 00 122458999999999887632 2378888887322 21
Q ss_pred ------EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee
Q 002209 380 ------ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK 453 (953)
Q Consensus 380 ------~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~ 453 (953)
.+.... ..+++.++|||||+.+++. . ...+.|.++++ ++++.+.+..
T Consensus 198 ~~~~~~~~~~~~------------~~~~~~~~~spdg~~l~v~-~-----------~~~~~v~v~~~---~~g~~~~~~~ 250 (361)
T 3scy_A 198 TKGTPEAFKVAP------------GSGPRHLIFNSDGKFAYLI-N-----------EIGGTVIAFRY---ADGMLDEIQT 250 (361)
T ss_dssp EEEEEEEEECCT------------TCCEEEEEECTTSSEEEEE-E-----------TTTCEEEEEEE---ETTEEEEEEE
T ss_pred ecccccceecCC------------CCCCeEEEEcCCCCEEEEE-c-----------CCCCeEEEEEe---cCCceEEeEE
Confidence 111110 1345679999999866554 1 12457888886 3444433322
Q ss_pred cc------cccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCc-cccCCCCCCCeEeccCCCEEEE
Q 002209 454 LD------LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE-DVYSDPGSPMMRRTSTGTYVIA 526 (953)
Q Consensus 454 ~~------~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~SpDG~~l~~ 526 (953)
.. .....++|||||++|+++.........+|.++..++ +...+...... .... ++|||||++|+.
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g--~~~~~~~~~~g~~~~~------~~~spdg~~l~~ 322 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG--TLTKVGYQLTGIHPRN------FIITPNGKYLLV 322 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC--CEEEEEEEECSSCCCE------EEECTTSCEEEE
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC--cEEEeeEecCCCCCce------EEECCCCCEEEE
Confidence 11 112368999999998776544133346777775554 32222211111 1111 789999999887
Q ss_pred EeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 527 KIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
..... +.-.+|.+|.++|+.+.+.
T Consensus 323 ~~~~~------------------~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 323 ACRDT------------------NVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp EETTT------------------TEEEEEEECTTTCCEEECS
T ss_pred EECCC------------------CCEEEEEEECCCCcEeecc
Confidence 75211 1234666788888877653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-14 Score=158.71 Aligned_cols=284 Identities=12% Similarity=0.046 Sum_probs=154.1
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
.|++|.+... .+....+...........++|||||+ |+++... .+...|+++++++|+.+.+...... .
T Consensus 17 ~i~v~~~d~~--tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~------~~~~~v~~~~~~~g~~~~~~~~~~~--~ 85 (347)
T 3hfq_A 17 GIYQGTLDTT--AKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKE------DDEGGIAAWQIDGQTAHKLNTVVAP--G 85 (347)
T ss_dssp EEEEEEEETT--TTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEE------TTEEEEEEEEEETTEEEEEEEEEEE--S
T ss_pred CEEEEEEcCC--CCeEEEeeeeeccCCcceEEEccCCe-EEEEEec------CCCceEEEEEecCCcEEEeeeeecC--C
Confidence 4566665321 14433333222234577899999999 7665531 2356899999888876655431110 0
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-- 321 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-- 321 (953)
.....++|+|||+.|+++.. ....+.++++
T Consensus 86 ~~p~~~a~spdg~~l~~~~~------------------------------------------------~~~~v~v~~~~~ 117 (347)
T 3hfq_A 86 TPPAYVAVDEARQLVYSANY------------------------------------------------HKGTAEVMKIAA 117 (347)
T ss_dssp CCCSEEEEETTTTEEEEEET------------------------------------------------TTTEEEEEEECT
T ss_pred CCCEEEEECCCCCEEEEEeC------------------------------------------------CCCEEEEEEeCC
Confidence 01457899999999987711 1123344444
Q ss_pred CCceeEeCC---C----------CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCc
Q 002209 322 DGTVKEIGP---P----------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLA 387 (953)
Q Consensus 322 ~g~~~~l~~---~----------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~ 387 (953)
+|..+.+.. . ..+..++|||||+ ++++... .+.|++|+++ ++....+......
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~------------~~~v~~~~~~~~g~~~~~~~~~~~ 184 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG------------SDKVYVYNVSDAGQLSEQSVLTME 184 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT------------TTEEEEEEECTTSCEEEEEEEECC
T ss_pred CCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC------------CCEEEEEEECCCCcEEEeeeEEcC
Confidence 444333211 1 1245689999999 5554421 2379999998 5544433321110
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee---cc------ccc
Q 002209 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK---LD------LRY 458 (953)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~---~~------~~~ 458 (953)
. ..+++.++|+|||+.+++. . ...+.+.+++++ ..+++.+.+.. .. ...
T Consensus 185 ~---------g~~p~~~~~spdg~~l~v~-~-----------~~~~~v~v~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 242 (347)
T 3hfq_A 185 A---------GFGPRHLVFSPDGQYAFLA-G-----------ELSSQIASLKYD-TQTGAFTQLGIVKTIPADYTAHNGA 242 (347)
T ss_dssp T---------TCCEEEEEECTTSSEEEEE-E-----------TTTTEEEEEEEE-TTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred C---------CCCCceEEECCCCCEEEEE-e-----------CCCCEEEEEEec-CCCCceEEeeeeeecCCCCCCCCcc
Confidence 0 0234578999999866554 1 123466666651 12233332221 11 124
Q ss_pred CCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCC--ccccCCCCCCCeEeccCCCEEEEEeeeccCCCc
Q 002209 459 GGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS--EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGT 536 (953)
Q Consensus 459 ~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~ 536 (953)
..++|||||++|+++...+ ....+|.++.++ ....+..... .... .++|||||++|+....+.
T Consensus 243 ~~i~~spdG~~l~v~~~~~-~~v~v~~~~~~g---~~~~~~~~~~~~~~~~------~~~~spdg~~l~v~~~~~----- 307 (347)
T 3hfq_A 243 AAIRLSHDGHFLYVSNRGY-NTLAVFAVTADG---HLTLIQQISTEGDFPR------DFDLDPTEAFVVVVNQNT----- 307 (347)
T ss_dssp EEEEECTTSCEEEEEEETT-TEEEEEEECGGG---CEEEEEEEECSSSCCC------EEEECTTSSEEEEEETTT-----
T ss_pred eeEEECCCCCEEEEEeCCC-CEEEEEEECCCC---cEEEeEEEecCCCCcC------eEEECCCCCEEEEEEcCC-----
Confidence 4589999999987765433 223455544322 2222221111 1111 178999999988775321
Q ss_pred EEEEecCCCCCCCCCCeEEEEECCCCceEEEec
Q 002209 537 YILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 537 ~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~ 569 (953)
+.-.+|.+|.++|+.+.+..
T Consensus 308 -------------~~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 308 -------------DNATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp -------------TEEEEEEECTTTCCEEEEEE
T ss_pred -------------CcEEEEEEeCCCCeEEeccc
Confidence 11234445777888776643
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=156.30 Aligned_cols=129 Identities=15% Similarity=0.139 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCc
Q 002209 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSP 822 (953)
Q Consensus 743 ~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp 822 (953)
+...++...+ ..+|++||+++|+|+||++++.++.++|+.|+++|+++|..... ..+ ..
T Consensus 117 i~~li~~~~~-~gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~~sG~lp~~-----------------~~~---~~ 175 (246)
T 4f21_A 117 VNKLIDSQVN-QGIASENIILAGFSQGGIIATYTAITSQRKLGGIMALSTYLPAW-----------------DNF---KG 175 (246)
T ss_dssp HHHHHHHHHH-C-CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEEESCCCTTH-----------------HHH---ST
T ss_pred HHHHHHHHHH-cCCChhcEEEEEeCchHHHHHHHHHhCccccccceehhhccCcc-----------------ccc---cc
Confidence 3333333333 35899999999999999999999999999999999999853210 000 00
Q ss_pred ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 823 FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 823 ~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
.......++|+|++||+.|.+|| ++.++++++.|++.|.++++..||++||.+. .+.++.+.+||++.|+
T Consensus 176 ~~~~~~~~~Pvl~~HG~~D~vVp--~~~~~~~~~~L~~~g~~v~~~~y~g~gH~i~-----~~~l~~~~~fL~k~l~ 245 (246)
T 4f21_A 176 KITSINKGLPILVCHGTDDQVLP--EVLGHDLSDKLKVSGFANEYKHYVGMQHSVC-----MEEIKDISNFIAKTFK 245 (246)
T ss_dssp TCCGGGTTCCEEEEEETTCSSSC--HHHHHHHHHHHHTTTCCEEEEEESSCCSSCC-----HHHHHHHHHHHHHHTT
T ss_pred cccccccCCchhhcccCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCccC-----HHHHHHHHHHHHHHhC
Confidence 00111235799999999999999 9999999999999999999999999999875 3446789999999875
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-14 Score=153.31 Aligned_cols=289 Identities=11% Similarity=-0.008 Sum_probs=168.2
Q ss_pred eceEEEEccCCCCCCce-eeeecCCCCC-cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCc
Q 002209 163 TGIGIHQLFPDGKLGQE-IEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI 240 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~-~~l~~~~~~~-~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 240 (953)
+.|++||+.+ ++. ..+. +.... .+..++|||||++|+++.. ....|+++|+.+++.......+..
T Consensus 11 ~~v~~~d~~~----~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~v~~~--------~~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 11 DKLVVIDTEK----MAVDKVIT-IADAGPTPMVPMVAPGGRIAYATVN--------KSESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp TEEEEEETTT----TEEEEEEE-CTTCTTCCCCEEECTTSSEEEEEET--------TTTEEEEEETTTCCEEEEEECCBT
T ss_pred CeEEEEECCC----CcEEEEEE-cCCCCCCccceEEcCCCCEEEEEeC--------CCCeEEEEECCCCCeEeeEEcCCc
Confidence 3689999843 332 2222 22211 3788999999999887652 246899999998876543322210
Q ss_pred c-ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEE
Q 002209 241 Y-LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (953)
Q Consensus 241 ~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 319 (953)
. ....+..++|+|||+.|+++....... ..... .....|+++
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~-------------------------------~~~~~------~~~~~i~v~ 120 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLE-------------------------------LTHFE------VQPTRVALY 120 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEEC-------------------------------SSCEE------ECCCEEEEE
T ss_pred ccccccccceEECCCCCEEEEEecccccc-------------------------------ccccc------ccCceEEEE
Confidence 0 000155889999999988772100000 00000 013578899
Q ss_pred Ec-CCceeE-eCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCcccccc
Q 002209 320 SL-DGTVKE-IGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV 397 (953)
Q Consensus 320 ~~-~g~~~~-l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~ 397 (953)
|+ +++... +..+..+..++|||||++|++.. +.|++||+++++.........
T Consensus 121 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---------------~~i~~~d~~~~~~~~~~~~~~----------- 174 (337)
T 1pby_B 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLG---------------RDLHVMDPEAGTLVEDKPIQS----------- 174 (337)
T ss_dssp ETTTTEEEEEEECCSSCCCEEECTTSSCEEEES---------------SSEEEEETTTTEEEEEECSTT-----------
T ss_pred ECCCCcEEEEEeCCCCcceeEECCCCCEEEEeC---------------CeEEEEECCCCcEeeeeeccc-----------
Confidence 99 775543 33335677889999999998872 279999998766543222111
Q ss_pred ccCccceeeccCCCCceEEE------------EeccCCCcccccccCCeEEEEecCCCCCCCceEEe--ecccccCCeee
Q 002209 398 RKGMRSINWRSDKPSTLYWA------------ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISW 463 (953)
Q Consensus 398 ~~~~~~~~wspDg~~i~~~~------------~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~--~~~~~~~~~~~ 463 (953)
....+.|+|||+.+++.. ....++.... ......++++|+ .+++...+. ........++|
T Consensus 175 --~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~d~---~~~~~~~~~~~~~~~~~~~~~~ 248 (337)
T 1pby_B 175 --WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP-TAYRTGLLTMDL---ETGEMAMREVRIMDVFYFSTAV 248 (337)
T ss_dssp --TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG-GGEEEEEEEEET---TTCCEEEEEEEECSSCEEEEEE
T ss_pred --cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccc-cccccceEEEeC---CCCCceEeecCCCCCceeeEEE
Confidence 012347999998765431 0000000000 011126788986 445544332 22233456899
Q ss_pred ccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecC
Q 002209 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGN 543 (953)
Q Consensus 464 SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~ 543 (953)
+|||++|++. . ..|+++|+.++ +........ ..... +.|+|||++|+....
T Consensus 249 s~dg~~l~~~-~-----~~v~~~d~~~~--~~~~~~~~~-~~~~~------~~~s~dg~~l~~~~~-------------- 299 (337)
T 1pby_B 249 NPAKTRAFGA-Y-----NVLESFDLEKN--ASIKRVPLP-HSYYS------VNVSTDGSTVWLGGA-------------- 299 (337)
T ss_dssp CTTSSEEEEE-E-----SEEEEEETTTT--EEEEEEECS-SCCCE------EEECTTSCEEEEESB--------------
T ss_pred CCCCCEEEEe-C-----CeEEEEECCCC--cCcceecCC-Cceee------EEECCCCCEEEEEcC--------------
Confidence 9999998877 1 27899998875 222222211 11111 789999998877531
Q ss_pred CCCCCCCCCeEEEEECCCCceEEEec
Q 002209 544 GATPEGNIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 544 ~~~~~~~~~~L~~~d~~~~~~~~l~~ 569 (953)
...|++||+.+++......
T Consensus 300 -------~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 300 -------LGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp -------SSEEEEEETTTCCEEEEEE
T ss_pred -------CCcEEEEECcCCcEEEEEE
Confidence 1249999999887665443
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.9e-14 Score=160.38 Aligned_cols=258 Identities=10% Similarity=0.082 Sum_probs=164.0
Q ss_pred ceEEEEccCCCCCCceeeee---cC-CCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCC
Q 002209 164 GIGIHQLFPDGKLGQEIEIQ---GF-PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD 239 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~---~~-~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 239 (953)
.|++||+.+ ++..... .+ .....+....|+|||+.++... ....|+++|+++++.........
T Consensus 145 ~i~~~d~~~----g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~---------~d~~v~~~d~~~~~~~~~~~~~~ 211 (433)
T 3bws_A 145 GMDVLDINS----GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQM---------QANAVHVFDLKTLAYKATVDLTG 211 (433)
T ss_dssp SEEEEETTT----CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEG---------GGTEEEEEETTTCCEEEEEECSS
T ss_pred eEEEEECCC----CeEeeecCcccccccCCceeEEEEcCCCEEEEEEC---------CCCEEEEEECCCceEEEEEcCCC
Confidence 579999853 2222211 01 1122577789999997665532 35689999999877654333222
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEE
Q 002209 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (953)
Q Consensus 240 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 319 (953)
.. +..++|+|||+.++++.. ..+.|+++
T Consensus 212 ~~----~~~~~~~~~~~~l~~~~~------------------------------------------------~~~~i~~~ 239 (433)
T 3bws_A 212 KW----SKILLYDPIRDLVYCSNW------------------------------------------------ISEDISVI 239 (433)
T ss_dssp SS----EEEEEEETTTTEEEEEET------------------------------------------------TTTEEEEE
T ss_pred CC----eeEEEEcCCCCEEEEEec------------------------------------------------CCCcEEEE
Confidence 22 668999999998876610 22468889
Q ss_pred Ec-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCcccccc
Q 002209 320 SL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV 397 (953)
Q Consensus 320 ~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~ 397 (953)
|+ +++....... ..+..++|+|||++|++.......- ....+.|++||+.+++.......+
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~-----~~~dg~i~~~d~~~~~~~~~~~~~------------ 302 (433)
T 3bws_A 240 DRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQ-----ESGGGRLGIYSMDKEKLIDTIGPP------------ 302 (433)
T ss_dssp ETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTT-----CSCCEEEEEEETTTTEEEEEEEEE------------
T ss_pred ECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCcc-----ccCCCeEEEEECCCCcEEeeccCC------------
Confidence 98 7765544443 6678899999999998887432100 001348999999866554433211
Q ss_pred ccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecc
Q 002209 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 398 ~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
..+..++|+|||+.+++.. ...+.+++|++ .+++..........+..++|+|||+.|++.....
T Consensus 303 -~~~~~~~~~~~g~~l~~~~------------~~~~~v~v~d~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 366 (433)
T 3bws_A 303 -GNKRHIVSGNTENKIYVSD------------MCCSKIEVYDL---KEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGP 366 (433)
T ss_dssp -ECEEEEEECSSTTEEEEEE------------TTTTEEEEEET---TTTEEEEEEECSSSEEEEEECTTSSEEEEEECCC
T ss_pred -CCcceEEECCCCCEEEEEe------------cCCCEEEEEEC---CCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCC
Confidence 2345789999998766551 33568999996 4444433334455567899999999988876542
Q ss_pred cC-----------ceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 478 TR-----------RTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 478 ~~-----------~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.. ...|+++|+.++ +........ ..+.. +.|+|||++|+...
T Consensus 367 ~~~~~~~~~~g~~dg~v~~~d~~~~--~~~~~~~~~-~~~~~------~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 367 NHPTEGYLKKGLVLGKVYVIDTTTD--TVKEFWEAG-NQPTG------LDVSPDNRYLVISD 419 (433)
T ss_dssp CCTTTCTTSCCSSCCEEEEEETTTT--EEEEEEECS-SSEEE------EEECTTSCEEEEEE
T ss_pred CccccccccccccceEEEEEECCCC--cEEEEecCC-CCCce------EEEcCCCCEEEEEE
Confidence 11 127899998775 333333221 11222 78999999998765
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.1e-15 Score=155.85 Aligned_cols=212 Identities=16% Similarity=0.181 Sum_probs=134.7
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
+++.+|.+++...+- . .|.||++||.+... ..| ......|+++||.|++ +|.
T Consensus 3 ~~~~~g~~l~y~~~g--------~--~~~vvllHG~~~~~-----------~~~----~~~~~~L~~~g~~vi~---~D~ 54 (273)
T 1a8s_A 3 FTTRDGTQIYYKDWG--------S--GQPIVFSHGWPLNA-----------DSW----ESQMIFLAAQGYRVIA---HDR 54 (273)
T ss_dssp EECTTSCEEEEEEES--------C--SSEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEE---ECC
T ss_pred EecCCCcEEEEEEcC--------C--CCEEEEECCCCCcH-----------HHH----hhHHhhHhhCCcEEEE---ECC
Confidence 566788888755441 1 36799999963211 011 2345578889999999 455
Q ss_pred CCCCChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCcccEEEEcccCCCCCC--
Q 002209 724 IGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTL-- 798 (953)
Q Consensus 724 ~G~G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~d~~~-- 798 (953)
+|+|.+... ........+|+.++++.+ +.+++.|+||||||.+++.+++++ |++++++|++++......
T Consensus 55 ~G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~ 128 (273)
T 1a8s_A 55 RGHGRSSQPWSGNDMDTYADDLAQLIEHL------DLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKT 128 (273)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEcccCcccccC
Confidence 678877532 123566777877777664 346899999999999999877665 899999999876421100
Q ss_pred --CCcCcc----------------------------c-c-----c-ch----hhhh------------HHHHHhcCcccc
Q 002209 799 --TPFGFQ----------------------------N-E-----D-RT----LWEA------------TSTYVEMSPFMS 825 (953)
Q Consensus 799 --~~~~~~----------------------------~-~-----~-~~----~~~~------------~~~~~~~sp~~~ 825 (953)
...... . . . .. .|.. ...+...+....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (273)
T 1a8s_A 129 EANPGGLPMEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTED 208 (273)
T ss_dssp SSCTTSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHH
T ss_pred ccccccCcHHHHHHHHHHhHhhHHHHHHHhhcccccCcCCcccccCHHHHHHHHHhccccchhHHHHHHHHHhccChhhh
Confidence 000000 0 0 0 00 0000 000111122334
Q ss_pred cCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 826 ~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
+.++++|+|+++|++|..+| +....+.+..+.. ..++++++++||... .+..+.+.+.+.+||.
T Consensus 209 l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~~---~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 272 (273)
T 1a8s_A 209 LKKIDVPTLVVHGDADQVVP--IEASGIASAALVK---GSTLKIYSGAPHGLT-DTHKDQLNADLLAFIK 272 (273)
T ss_dssp HHTCCSCEEEEEETTCSSSC--STTTHHHHHHHST---TCEEEEETTCCSCHH-HHTHHHHHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCccCC--hHHHHHHHHHhCC---CcEEEEeCCCCCcch-hhCHHHHHHHHHHHHh
Confidence 56789999999999999998 7755444443322 358999999999863 4567788888999985
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-15 Score=159.57 Aligned_cols=235 Identities=13% Similarity=0.098 Sum_probs=147.8
Q ss_pred ceEEEEEEcC-CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 638 QKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 638 ~~~~~~~~~~-dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
..+.+++.+. .|.++..+ +|+.+ + |+|+++||.... .....|.... .....++++||+|+
T Consensus 5 ~~~~~~~~s~~~~~~~~v~--~~p~~------~-~~v~llHG~~~~---------~~~~~w~~~~-~~~~~l~~~~~~vv 65 (280)
T 1dqz_A 5 PVEYLQVPSASMGRDIKVQ--FQGGG------P-HAVYLLDGLRAQ---------DDYNGWDINT-PAFEEYYQSGLSVI 65 (280)
T ss_dssp CEEEEEEEETTTTEEEEEE--EECCS------S-SEEEECCCTTCC---------SSSCHHHHHS-CHHHHHTTSSSEEE
T ss_pred eEEEEEEECcccCceeEEE--EcCCC------C-CEEEEECCCCCC---------CCcccccccC-cHHHHHhcCCeEEE
Confidence 4566677654 45666655 45443 1 489999996310 0001111000 11234667899999
Q ss_pred EcCCCCCCCCCChhh---------hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEE
Q 002209 717 GGPTTPIIGEGDEEA---------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~---------~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (953)
.++..+..++..... ...+.....+|+... +.++..+++++++|+|+||||++|+.++.++|++|+++
T Consensus 66 ~pd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~---i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~ 142 (280)
T 1dqz_A 66 MPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAW---LQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYA 142 (280)
T ss_dssp EECCCTTCTTSBCSSSCTTTTCCSCCBHHHHHHTHHHHH---HHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEE
T ss_pred EECCCCCccccCCCCCCccccccccccHHHHHHHHHHHH---HHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEE
Confidence 988754333321100 112222223444444 43433466779999999999999999999999999999
Q ss_pred EEcccCCCCCCCCcC-cc-----cc----cchhhh--hHHHHHhcCcccccCCC---CCcEEEEEeCCCC----------
Q 002209 788 IARSGAYNRTLTPFG-FQ-----NE----DRTLWE--ATSTYVEMSPFMSANKL---KKPILLVHGEEDN---------- 842 (953)
Q Consensus 788 v~~~~~~d~~~~~~~-~~-----~~----~~~~~~--~~~~~~~~sp~~~~~~i---~~P~Li~~G~~D~---------- 842 (953)
|+++|.++....... +. .. ....|. ....+...+|..++.++ ..|+++.||+.|.
T Consensus 143 v~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~l~~~~~~~~l~~G~~D~~~~~~~~~~~ 222 (280)
T 1dqz_A 143 ASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPA 222 (280)
T ss_dssp EEESCCCCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHH
T ss_pred EEecCcccccCcchhhhHHHHhhhccCcCHHHhcCCCCchhhhhcCHHHHHHHHHhcCCeEEEEeCCCCcccccccccch
Confidence 999998764321000 00 00 000111 11345666777666555 5899999999997
Q ss_pred ----CCCCchHHHHHHHHHHHhCC-CcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 843 ----NSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 843 ----~v~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
.++ ..++++++++|++.| +++++.++++++|.+. .+...+...+.||.+.|+
T Consensus 223 ~~~e~~~--~~~~~~~~~~L~~~g~~~~~~~~~~~g~H~~~---~w~~~l~~~l~~l~~~l~ 279 (280)
T 1dqz_A 223 KFLEGLT--LRTNQTFRDTYAADGGRNGVFNFPPNGTHSWP---YWNEQLVAMKADIQHVLN 279 (280)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHH
T ss_pred hhHHHHH--HHHHHHHHHHHHhCCCCceEEEecCCCccChH---HHHHHHHHHHHHHHHHhC
Confidence 456 888999999999999 9999999988899762 344556677888877663
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=154.15 Aligned_cols=183 Identities=12% Similarity=0.070 Sum_probs=110.8
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHc--CcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR--GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAV 747 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~ 747 (953)
-|+|||+||.. ++++.+ .......++.++ ||.|+++|. .|+|.+ ..++ +
T Consensus 2 mptIl~lHGf~-----------ss~~s~--k~~~l~~~~~~~~~~~~v~~pdl---~~~g~~---------~~~~----l 52 (202)
T 4fle_A 2 MSTLLYIHGFN-----------SSPSSA--KATTFKSWLQQHHPHIEMQIPQL---PPYPAE---------AAEM----L 52 (202)
T ss_dssp -CEEEEECCTT-----------CCTTCH--HHHHHHHHHHHHCTTSEEECCCC---CSSHHH---------HHHH----H
T ss_pred CcEEEEeCCCC-----------CCCCcc--HHHHHHHHHHHcCCCcEEEEeCC---CCCHHH---------HHHH----H
Confidence 38999999941 111111 011223445554 599999554 555432 2222 2
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCc----CcccccchhhhhHHHHHhcCcc
Q 002209 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF----GFQNEDRTLWEATSTYVEMSPF 823 (953)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~sp~ 823 (953)
+.+... .+.++++|+|+||||++|+.++.++|....+++...+..+...... .+....................
T Consensus 53 ~~~~~~--~~~~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (202)
T 4fle_A 53 ESIVMD--KAGQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGENQNPYTGQKYVLESRHIYDLKAMQ 130 (202)
T ss_dssp HHHHHH--HTTSCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEEEECTTTCCEEEECHHHHHHHHTTC
T ss_pred HHHHHh--cCCCcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhhhccccccccccchHHHHHHHHhhh
Confidence 333222 1357999999999999999999999887766655544322110000 0000000001111112223445
Q ss_pred cccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 824 ~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
..+.++++|+||+||++|.+|| ++++.++++ ++++.+++|++|.+... +++++.|.+||+
T Consensus 131 ~~~~~~~~P~LiihG~~D~~Vp--~~~s~~l~~-------~~~l~i~~g~~H~~~~~---~~~~~~I~~FL~ 190 (202)
T 4fle_A 131 IEKLESPDLLWLLQQTGDEVLD--YRQAVAYYT-------PCRQTVESGGNHAFVGF---DHYFSPIVTFLG 190 (202)
T ss_dssp CSSCSCGGGEEEEEETTCSSSC--HHHHHHHTT-------TSEEEEESSCCTTCTTG---GGGHHHHHHHHT
T ss_pred hhhhccCceEEEEEeCCCCCCC--HHHHHHHhh-------CCEEEEECCCCcCCCCH---HHHHHHHHHHHh
Confidence 5677889999999999999999 999988863 25889999999987543 356778888886
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-14 Score=186.24 Aligned_cols=379 Identities=11% Similarity=0.031 Sum_probs=220.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||+.++..... .+.+|++.+ + .....+. .....
T Consensus 800 ~v~~~~~s~dg~~l~~~~~~----------------------------------~v~~~d~~~-~--~~~~~~~-~~~~~ 841 (1249)
T 3sfz_A 800 IVKCCSWSADGDKIIVAAKN----------------------------------KVLLFDIHT-S--GLLAEIH-TGHHS 841 (1249)
T ss_dssp CBCCCCBCTTSSEEEEEETT----------------------------------EEEEEETTT-C--CEEEEEE-CSSSS
T ss_pred eEEEEEECCCCCEEEEEcCC----------------------------------cEEEEEecC-C--CceeEEc-CCCCC
Confidence 45678999999999988763 678999854 2 1222222 12334
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....|||||+.++... ....|.+++++++............ +..++|+|||+.|+....+.....
T Consensus 842 ~v~~~~~sp~~~~l~~~~---------~dg~v~vwd~~~~~~~~~~~~h~~~----v~~v~~spdg~~l~s~s~dg~v~v 908 (1249)
T 3sfz_A 842 TIQYCDFSPYDHLAVIAL---------SQYCVELWNIDSRLKVADCRGHLSW----VHGVMFSPDGSSFLTASDDQTIRV 908 (1249)
T ss_dssp CCCEEEECSSTTEEEEEC---------SSSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceEEEEEcCCCCEEEEEe---------CCCeEEEEEcCCCceeeecCCCccc----eEEEEECCCCCEEEEEeCCCeEEE
Confidence 788999999999998854 3557888898887655433323222 778999999999887744322110
Q ss_pred C------CCCCCCC----------------------CCceeecCCCcccc-chhhhhhcCCcchhhhhh-hhccceEEEE
Q 002209 270 P------KKPLVPL----------------------GPKMQSNEKRDIIQ-VRTFQDLLKDEYDEDLFD-YYATTQLVLV 319 (953)
Q Consensus 270 ~------~~~~~~~----------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~-~~~~~~l~~~ 319 (953)
- ....... +............. .......+....++..+. -...+.|.++
T Consensus 909 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~ 988 (1249)
T 3sfz_A 909 WETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKII 988 (1249)
T ss_dssp EEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEE
T ss_pred EEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEE
Confidence 0 0000000 00000000000000 000000001111111111 1134567788
Q ss_pred Ec-CCceeE-eCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccc
Q 002209 320 SL-DGTVKE-IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNS 396 (953)
Q Consensus 320 ~~-~g~~~~-l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~ 396 (953)
++ +++... +... ..+..++|||||++|+..+.+ +.|.+|++.++....+..+.
T Consensus 989 d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-------------g~i~vwd~~~~~~~~~~~~~----------- 1044 (1249)
T 3sfz_A 989 ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED-------------SVIQVWNWQTGDYVFLQAHQ----------- 1044 (1249)
T ss_dssp ETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS-------------SBEEEEETTTTEEECCBCCS-----------
T ss_pred EcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC-------------CEEEEEECCCCceEEEecCC-----------
Confidence 88 665433 3333 778899999999999988744 38999999977665443322
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEec
Q 002209 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 397 ~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
..+..+.|+||++ ++.. +..+.+.+|++ .++.....+..+...+..++|||||+.|+..+.+
T Consensus 1045 --~~v~~~~~~~~~~-l~~~-------------~~dg~v~vwd~--~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d 1106 (1249)
T 3sfz_A 1045 --ETVKDFRLLQDSR-LLSW-------------SFDGTVKVWNV--ITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD 1106 (1249)
T ss_dssp --SCEEEEEECSSSE-EEEE-------------ESSSEEEEEET--TTTCCCEEEECCSSCCCCEEECSSSSSCEEECCS
T ss_pred --CcEEEEEEcCCCc-EEEE-------------ECCCcEEEEEC--CCCceeEEEcccCCcEEEEEECCCCCEEEEEcCC
Confidence 3346789999885 3333 34568999996 4444456677777788899999999999887655
Q ss_pred ccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEE
Q 002209 477 KTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDL 556 (953)
Q Consensus 477 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 556 (953)
+ .+.+++..++ +...........+.. +.|||||++|+....+. .|++
T Consensus 1107 ~----~v~iwd~~~~--~~~~~l~~h~~~v~~------~~~s~dg~~lat~~~dg---------------------~i~v 1153 (1249)
T 3sfz_A 1107 K----TAKIWSFDLL--SPLHELKGHNGCVRC------SAFSLDGILLATGDDNG---------------------EIRI 1153 (1249)
T ss_dssp S----CCCEECSSSS--SCSBCCCCCSSCEEE------EEECSSSSEEEEEETTS---------------------CCCE
T ss_pred C----cEEEEECCCc--ceeeeeccCCCcEEE------EEECCCCCEEEEEeCCC---------------------EEEE
Confidence 4 3445565554 222222222222222 78999999998876322 3889
Q ss_pred EECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002209 557 FDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (953)
Q Consensus 557 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~ 622 (953)
||+.+++.......... ..........-...+|||||+.++.. . ..+.++++.+++..
T Consensus 1154 wd~~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~fs~dg~~l~s~-~-----g~v~vwd~~~g~~~ 1211 (1249)
T 3sfz_A 1154 WNVSDGQLLHSCAPISV--EEGTATHGGWVTDVCFSPDSKTLVSA-G-----GYLKWWNVATGDSS 1211 (1249)
T ss_dssp EESSSSCCCCCCCCCC---------CCSCCCEEEECTTSSCEEEE-S-----SSEEEBCSSSCBCC
T ss_pred EECCCCceEEEeccccc--cccccccCceEEEEEECCCCCEEEEC-C-----CeEEEEECCCCcee
Confidence 99988775443211100 00000000111235799999987643 2 46889998887643
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.9e-15 Score=153.67 Aligned_cols=206 Identities=12% Similarity=0.005 Sum_probs=135.8
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC
Q 002209 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (953)
Q Consensus 643 ~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (953)
++...+|.++....+- +.|+||++||+.... ..| ......|+ +||.|+.+ +
T Consensus 6 ~~~~~~g~~l~~~~~g----------~~~~vv~lHG~~~~~-----------~~~----~~~~~~l~-~~~~vi~~---d 56 (262)
T 3r0v_A 6 TVPSSDGTPIAFERSG----------SGPPVVLVGGALSTR-----------AGG----APLAERLA-PHFTVICY---D 56 (262)
T ss_dssp EEECTTSCEEEEEEEE----------CSSEEEEECCTTCCG-----------GGG----HHHHHHHT-TTSEEEEE---C
T ss_pred eEEcCCCcEEEEEEcC----------CCCcEEEECCCCcCh-----------HHH----HHHHHHHh-cCcEEEEE---e
Confidence 4566789888866642 146799999964211 011 23344455 89999995 4
Q ss_pred CCCCCChhhhh-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCc
Q 002209 723 IIGEGDEEAND-RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF 801 (953)
Q Consensus 723 ~~G~G~~~~~~-~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~ 801 (953)
.+|+|.+.... .......+|+.++++.+ + +++.++|||+||.+++.++.++| +++++|+++|.........
T Consensus 57 ~~G~G~S~~~~~~~~~~~~~~~~~~~~~l------~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~ 128 (262)
T 3r0v_A 57 RRGRGDSGDTPPYAVEREIEDLAAIIDAA------G-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRP 128 (262)
T ss_dssp CTTSTTCCCCSSCCHHHHHHHHHHHHHHT------T-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSC
T ss_pred cCCCcCCCCCCCCCHHHHHHHHHHHHHhc------C-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccc
Confidence 46777775432 23456667776666654 2 58999999999999999999999 9999999998755321110
Q ss_pred Ccccc-------------------------cchhhhhHHHHH------------------------hcCcccccCCCCCc
Q 002209 802 GFQNE-------------------------DRTLWEATSTYV------------------------EMSPFMSANKLKKP 832 (953)
Q Consensus 802 ~~~~~-------------------------~~~~~~~~~~~~------------------------~~sp~~~~~~i~~P 832 (953)
..... .....+..+.+. ...+...+.++++|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P 208 (262)
T 3r0v_A 129 PVPPDYQTRLDALLAEGRRGDAVTYFMTEGVGVPPDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFASISIP 208 (262)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHTSCCCHHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHTTCCSC
T ss_pred hhhhHHHHHHHHHhhccchhhHHHHHhhcccCCCHHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcCcCCCC
Confidence 00000 000000000000 00223456788999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 833 ~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
+|+++|++|..+| ++.+.++.+.+. ..++++++++||. ++.+.+.+.+.+||+
T Consensus 209 ~lii~G~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~----~~p~~~~~~i~~fl~ 261 (262)
T 3r0v_A 209 TLVMDGGASPAWI--RHTAQELADTIP----NARYVTLENQTHT----VAPDAIAPVLVEFFT 261 (262)
T ss_dssp EEEEECTTCCHHH--HHHHHHHHHHST----TEEEEECCCSSSS----CCHHHHHHHHHHHHC
T ss_pred EEEEeecCCCCCC--HHHHHHHHHhCC----CCeEEEecCCCcc----cCHHHHHHHHHHHHh
Confidence 9999999999988 888888877664 3689999999993 356778888888875
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-14 Score=154.18 Aligned_cols=274 Identities=10% Similarity=0.074 Sum_probs=168.3
Q ss_pred CCCCceecCCC-CEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCC-C-ceeeeecCC
Q 002209 110 PLPALSFSPQR-DKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL-G-QEIEIQGFP 186 (953)
Q Consensus 110 ~~~~~~~SPDG-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~-~-~~~~l~~~~ 186 (953)
.+..++|||++ +.|+..+.+ +.|.+|++..+... + ..+.+.++.
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~D---------------------------------~~v~~W~~~~~~~~~~~~~~~~~~h~ 65 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASRD---------------------------------KTLISWKLTGDDQKFGVPVRSFKGHS 65 (319)
T ss_dssp CEEEEEECSSCTTEEEEEETT---------------------------------SEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred eEEEEEccCCCccEEEEecCC---------------------------------ccEEEecCCCCCccccccceEEeCCc
Confidence 46678999976 677777665 36789988432110 0 112333322
Q ss_pred CCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 187 ~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
..+....|+|||++|+... ....|.++|+.+++..+........ +..++|+|+++.|+...
T Consensus 66 --~~v~~~~~s~dg~~l~s~s---------~D~~v~~wd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~s---- 126 (319)
T 3frx_A 66 --HIVQDCTLTADGAYALSAS---------WDKTLRLWDVATGETYQRFVGHKSD----VMSVDIDKKASMIISGS---- 126 (319)
T ss_dssp --SCEEEEEECTTSSEEEEEE---------TTSEEEEEETTTTEEEEEEECCSSC----EEEEEECTTSCEEEEEE----
T ss_pred --ccEEEEEECCCCCEEEEEe---------CCCEEEEEECCCCCeeEEEccCCCc----EEEEEEcCCCCEEEEEe----
Confidence 4688899999999998755 2568889999988765433322222 77899999999988661
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCC--
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPD-- 342 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpD-- 342 (953)
..+.|.++++ ......+... ..+..+.|+|+
T Consensus 127 ---------------------------------------------~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 127 ---------------------------------------------RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp ---------------------------------------------TTSCEEEEETTSCEEEEECCCSSCEEEEEECCC--
T ss_pred ---------------------------------------------CCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCC
Confidence 1234556677 4444455444 66777888885
Q ss_pred ----CcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEE
Q 002209 343 ----EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (953)
Q Consensus 343 ----G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~ 417 (953)
+..|+..+.+ +.|.+||+...... .+..+ ...+..++|+|||+.|+..
T Consensus 162 ~~~~~~~l~s~~~d-------------~~i~~wd~~~~~~~~~~~~h-------------~~~v~~~~~sp~g~~l~s~- 214 (319)
T 3frx_A 162 ADDDSVTIISAGND-------------KMVKAWNLNQFQIEADFIGH-------------NSNINTLTASPDGTLIASA- 214 (319)
T ss_dssp ----CCEEEEEETT-------------SCEEEEETTTTEEEEEECCC-------------CSCEEEEEECTTSSEEEEE-
T ss_pred CCCCccEEEEEeCC-------------CEEEEEECCcchhheeecCC-------------CCcEEEEEEcCCCCEEEEE-
Confidence 4466666533 38999999865433 23222 1345679999999977655
Q ss_pred EeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEE
Q 002209 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (953)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 497 (953)
+..+.|.+||+ ..++..........+..++|+|||..|+...... .++|.++... ...
T Consensus 215 ------------~~dg~i~iwd~---~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~---i~v~~~~~~~----~~~ 272 (319)
T 3frx_A 215 ------------GKDGEIMLWNL---AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG---IKVFSLDPQY----LVD 272 (319)
T ss_dssp ------------ETTCEEEEEET---TTTEEEEEEECCSCEEEEEECSSSSEEEEEETTE---EEEEEETTEE----EEE
T ss_pred ------------eCCCeEEEEEC---CCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCC---cEEEEeCcCe----eee
Confidence 44668999996 4333322233345577899999999988765321 3566654221 111
Q ss_pred eecCCCcccc--CCCCCCCeEeccCCCEEEEEee
Q 002209 498 LFDRSSEDVY--SDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 498 ~~~~~~~~~~--~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
.......... .......++|||||++|+....
T Consensus 273 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~ 306 (319)
T 3frx_A 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306 (319)
T ss_dssp EECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET
T ss_pred ccCccccccccCcCcceeEEEECCCCCEEEEeec
Confidence 1111100000 0000011789999999987763
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-14 Score=152.58 Aligned_cols=266 Identities=11% Similarity=0.084 Sum_probs=169.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++|+....+ +.|.+||+.+ + ...+.+.. ...
T Consensus 15 ~V~~~~fsp~~~~l~s~~~d---------------------------------g~v~lWd~~~-~--~~~~~~~~--~~~ 56 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYS---------------------------------GRVELWNYET-Q--VEVRSIQV--TET 56 (304)
T ss_dssp CEEEEEECSSSSEEEEEETT---------------------------------SEEEEEETTT-T--EEEEEEEC--CSS
T ss_pred ceEEEEECCCCCEEEEEcCC---------------------------------CcEEEEECCC-C--ceeEEeec--cCC
Confidence 57789999999999988875 3679999853 2 12233332 223
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....|+|||++|+... ....|.++|+++++........... +..++|+||++.|+...
T Consensus 57 ~v~~~~~~~~~~~l~s~s---------~d~~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~sgs------- 116 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGS---------DDFRIRVFNYNTGEKVVDFEAHPDY----IRSIAVHPTKPYVLSGS------- 116 (304)
T ss_dssp CEEEEEEEGGGTEEEEEE---------TTSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSSSEEEEEE-------
T ss_pred cEEEEEEeCCCCEEEEEC---------CCCEEEEEECCCCcEEEEEeCCCCc----EEEEEEcCCCCEEEEEC-------
Confidence 678899999999998855 3568888999888764433322222 77899999999888661
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-cee-EeCCC-CcccccccCC-CCc
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVK-EIGPP-AVYTSLDPSP-DEK 344 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~-~l~~~-~~~~~~~~Sp-DG~ 344 (953)
..+.|.++|+ ++ ... .+... ..+..++|+| |++
T Consensus 117 ------------------------------------------~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 154 (304)
T 2ynn_A 117 ------------------------------------------DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154 (304)
T ss_dssp ------------------------------------------TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT
T ss_pred ------------------------------------------CCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC
Confidence 2245667777 55 333 33333 6788999999 678
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeecc--CCCCceEEEEecc
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRS--DKPSTLYWAETQD 421 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wsp--Dg~~i~~~~~~~~ 421 (953)
.|+..+.+ +.|.+||+.... ...+.... ..++..+.|+| |++.++-.
T Consensus 155 ~l~sgs~D-------------~~v~iwd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~l~s~----- 204 (304)
T 2ynn_A 155 TFASGCLD-------------RTVKVWSLGQSTPNFTLTTGQ------------ERGVNYVDYYPLPDKPYMITA----- 204 (304)
T ss_dssp EEEEEETT-------------SEEEEEETTCSSCSEEEECCC------------TTCEEEEEECCSTTCCEEEEE-----
T ss_pred EEEEEeCC-------------CeEEEEECCCCCccceeccCC------------cCcEEEEEEEEcCCCCEEEEE-----
Confidence 88777644 389999997433 22222111 12234567766 55544443
Q ss_pred CCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecC
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 501 (953)
+..+.|.+||+ .++.....+..+...+..+.|+|+++.|+..+.++ .|.++|..++ +.......
T Consensus 205 --------s~D~~i~iWd~--~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg----~i~iWd~~~~--~~~~~~~~ 268 (304)
T 2ynn_A 205 --------SDDLTIKIWDY--QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG----TLKIWNSSTY--KVEKTLNV 268 (304)
T ss_dssp --------ETTSEEEEEET--TTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS----CEEEEETTTC--CEEEEECC
T ss_pred --------cCCCeEEEEeC--CCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCC----eEEEEECCCC--ceeeeccC
Confidence 44568999996 23323344556667778899999999888776554 3445566554 22333333
Q ss_pred CCccccCCCCCCCeEeccCCCE--EEEE
Q 002209 502 SSEDVYSDPGSPMMRRTSTGTY--VIAK 527 (953)
Q Consensus 502 ~~~~~~~~~~~p~~~~SpDG~~--l~~~ 527 (953)
....++. ++|+|+|+. ++..
T Consensus 269 ~~~~~~~------~~~~~~~~~~~~asg 290 (304)
T 2ynn_A 269 GLERSWC------IATHPTGRKNYIASG 290 (304)
T ss_dssp SSSSEEE------EEECTTCGGGCEEEE
T ss_pred CCccEEE------EEECCCCCceEEEEe
Confidence 3333332 678888863 4443
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.8e-15 Score=157.88 Aligned_cols=213 Identities=16% Similarity=0.101 Sum_probs=139.4
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCC
Q 002209 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (953)
Q Consensus 642 ~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~ 721 (953)
..+...+|.+++...+-|++ .|.||++||++... . ..| ......| +.||.|++ .
T Consensus 5 ~~~~~~~g~~l~~~~~G~~~--------~~~vvllHG~~~~~-----------~--~~w-~~~~~~L-~~~~~vi~---~ 58 (286)
T 2yys_A 5 IGYVPVGEAELYVEDVGPVE--------GPALFVLHGGPGGN-----------A--YVL-REGLQDY-LEGFRVVY---F 58 (286)
T ss_dssp EEEEECSSCEEEEEEESCTT--------SCEEEEECCTTTCC-----------S--HHH-HHHHGGG-CTTSEEEE---E
T ss_pred eeEEeECCEEEEEEeecCCC--------CCEEEEECCCCCcc-----------h--hHH-HHHHHHh-cCCCEEEE---E
Confidence 34555688889887775421 46799999964211 0 001 1122334 56999999 5
Q ss_pred CCCCCCChhh-h----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC
Q 002209 722 PIIGEGDEEA-N----DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (953)
Q Consensus 722 ~~~G~G~~~~-~----~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~ 796 (953)
|.+|+|.|.. . ........+|+.+.++.+ ..+++.|+||||||.+++.++.++|+ ++++|++++....
T Consensus 59 Dl~G~G~S~~~~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~~ 131 (286)
T 2yys_A 59 DQRGSGRSLELPQDPRLFTVDALVEDTLLLAEAL------GVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVNF 131 (286)
T ss_dssp CCTTSTTSCCCCSCGGGCCHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCBH
T ss_pred CCCCCCCCCCCccCcccCcHHHHHHHHHHHHHHh------CCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccCc
Confidence 5578888764 2 223567778887777665 23589999999999999999999999 9999999875421
Q ss_pred CC-C-Cc-------C-------ccc----cc-----c------hhh-hh----------------HHH--HH---hcCcc
Q 002209 797 TL-T-PF-------G-------FQN----ED-----R------TLW-EA----------------TST--YV---EMSPF 823 (953)
Q Consensus 797 ~~-~-~~-------~-------~~~----~~-----~------~~~-~~----------------~~~--~~---~~sp~ 823 (953)
.. . .. . +.. .. . ..+ .. ... +. ..+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (286)
T 2yys_A 132 PWLAARLAEAAGLAPLPDPEENLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLDYT 211 (286)
T ss_dssp HHHHHHHHHHTTCCCCSCHHHHHHHHHHHSCHHHHHHHHHCSSHHHHHHHHHHHHHTTCCCCSHHHHHHHHTTGGGCBCG
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHhccCChHHHHHhhhccCCccccChHHHHHHHhhccccccchhhcccccccCChh
Confidence 00 0 00 0 000 00 0 000 00 000 00 01122
Q ss_pred cccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 824 ~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
..+.++++|+|+++|++|..++ +. ++++.+ +... +++++|++||... .+..+.+.+.+.+||.+
T Consensus 212 ~~l~~i~~P~lvi~G~~D~~~~--~~-~~~~~~-~~~~----~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 275 (286)
T 2yys_A 212 PYLTPERRPLYVLVGERDGTSY--PY-AEEVAS-RLRA----PIRVLPEAGHYLW-IDAPEAFEEAFKEALAA 275 (286)
T ss_dssp GGCCCCSSCEEEEEETTCTTTT--TT-HHHHHH-HHTC----CEEEETTCCSSHH-HHCHHHHHHHHHHHHHT
T ss_pred hhhhhcCCCEEEEEeCCCCcCC--Hh-HHHHHh-CCCC----CEEEeCCCCCCcC-hhhHHHHHHHHHHHHHh
Confidence 3466789999999999999998 88 888877 7643 7889999999863 55677888999999976
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=162.90 Aligned_cols=269 Identities=10% Similarity=0.105 Sum_probs=170.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++|+....+ +.|.+|+. ++ .....+.. ...
T Consensus 110 ~v~~~~~s~~~~~l~~~~~d---------------------------------g~i~i~~~--~~--~~~~~~~~--~~~ 150 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVEN---------------------------------GELRLWNK--TG--ALLNVLNF--HRA 150 (425)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SCEEEEET--TS--CEEEEECC--CCS
T ss_pred ceEEEEEcCCCCEEEEEeCC---------------------------------CeEEEEeC--CC--CeeeeccC--CCc
Confidence 56788999999999988765 36789984 22 33344433 234
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc-----------cccccceEEecCCeEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-----------NAIFDNFVWVNNSTLL 258 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~-----------~~~~~~~~wspDg~~l 258 (953)
.+..+.|+|||+.|+.... ...|.++++.+++............ ...+..+.|+|++..+
T Consensus 151 ~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (425)
T 1r5m_A 151 PIVSVKWNKDGTHIISMDV---------ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFV 221 (425)
T ss_dssp CEEEEEECTTSSEEEEEET---------TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEE
T ss_pred cEEEEEECCCCCEEEEEec---------CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEE
Confidence 7899999999999988652 5678889998877654433222100 0004578899988744
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-Cccc
Q 002209 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYT 335 (953)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~ 335 (953)
+.. ..+.|+++++ +++. ..+... ..+.
T Consensus 222 ~~~--------------------------------------------------~~g~i~~~d~~~~~~~~~~~~~~~~i~ 251 (425)
T 1r5m_A 222 IPG--------------------------------------------------PKGAIFVYQITEKTPTGKLIGHHGPIS 251 (425)
T ss_dssp EEC--------------------------------------------------GGGCEEEEETTCSSCSEEECCCSSCEE
T ss_pred EEc--------------------------------------------------CCCeEEEEEcCCCceeeeeccCCCceE
Confidence 422 2356888888 6643 334333 7788
Q ss_pred ccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCce
Q 002209 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (953)
Q Consensus 336 ~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~ 414 (953)
.++|+|||+.|+....+ +.|.+||+..+.. ..+..+ ...+..+.|+||| .++
T Consensus 252 ~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~-~l~ 304 (425)
T 1r5m_A 252 VLEFNDTNKLLLSASDD-------------GTLRIWHGGNGNSQNCFYGH-------------SQSIVSASWVGDD-KVI 304 (425)
T ss_dssp EEEEETTTTEEEEEETT-------------SCEEEECSSSBSCSEEECCC-------------SSCEEEEEEETTT-EEE
T ss_pred EEEECCCCCEEEEEcCC-------------CEEEEEECCCCccceEecCC-------------CccEEEEEECCCC-EEE
Confidence 99999999999887743 3899999985432 233221 1334679999999 333
Q ss_pred EEEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCC
Q 002209 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV 493 (953)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~ 493 (953)
.. +..+.+.+|++ ..++. ..+..+...+..+.|+|||+.|+....++ .+.++++.++..
T Consensus 305 ~~-------------~~d~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~i~~~~~~~~ 364 (425)
T 1r5m_A 305 SC-------------SMDGSVRLWSL---KQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG----QVNVYDLKKLNS 364 (425)
T ss_dssp EE-------------ETTSEEEEEET---TTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS----CEEEEECHHHHC
T ss_pred EE-------------eCCCcEEEEEC---CCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC----eEEEEECCCCcc
Confidence 33 34568999996 33333 33444466677899999999988876443 344445443210
Q ss_pred ------------------CcEEeecCCCc--cccCCCCCCCeEeccCCCEEEEEee
Q 002209 494 ------------------APRILFDRSSE--DVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 494 ------------------~~~~~~~~~~~--~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
........... .+.. +.|+|||++|+....
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~s~~~~~l~~~~~ 414 (425)
T 1r5m_A 365 KSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFD------LSWNCAGNKISVAYS 414 (425)
T ss_dssp --------------CEECCEEEEECCTTCCCCEEE------EEECTTSSEEEEEES
T ss_pred ceeeeecccccccCcccchhhhhhcCcccCCceEE------EEccCCCceEEEEec
Confidence 01222222211 2222 789999998887763
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-13 Score=149.17 Aligned_cols=266 Identities=15% Similarity=0.123 Sum_probs=171.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++|+....+ +.|.+|++.+ + .....+..+ ..
T Consensus 25 ~v~~~~~s~~~~~l~s~~~d---------------------------------g~i~iw~~~~-~--~~~~~~~~h--~~ 66 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSAD---------------------------------KLIKIWGAYD-G--KFEKTISGH--KL 66 (312)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SCEEEEETTT-C--CEEEEECCC--SS
T ss_pred cEEEEEECCCCCEEEEeeCC---------------------------------CeEEEEeCCC-c--ccchhhccC--CC
Confidence 56788999999999988775 3678999843 2 223334332 24
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....|+|||+.|+.... ...|.++|+++++........... +..+.|+|+++.|+...
T Consensus 67 ~v~~~~~~~~~~~l~s~~~---------d~~i~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~------- 126 (312)
T 4ery_A 67 GISDVAWSSDSNLLVSASD---------DKTLKIWDVSSGKCLKTLKGHSNY----VFCCNFNPQSNLIVSGS------- 126 (312)
T ss_dssp CEEEEEECTTSSEEEEEET---------TSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSSSEEEEEE-------
T ss_pred ceEEEEEcCCCCEEEEECC---------CCEEEEEECCCCcEEEEEcCCCCC----EEEEEEcCCCCEEEEEe-------
Confidence 6889999999999988652 568888999888765443322222 66889999999988661
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCC-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDG~~l 346 (953)
..+.|.++|+ +++ ...+... ..+..++|+|||+.|
T Consensus 127 ------------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (312)
T 4ery_A 127 ------------------------------------------FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 164 (312)
T ss_dssp ------------------------------------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred ------------------------------------------CCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEE
Confidence 2245778888 664 3444444 678889999999999
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
+..+.+ +.|.+||+..+. .+.+.... ...+..++|+|||+.++..
T Consensus 165 ~~~~~d-------------~~i~~wd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~--------- 210 (312)
T 4ery_A 165 VSSSYD-------------GLCRIWDTASGQCLKTLIDDD------------NPPVSFVKFSPNGKYILAA--------- 210 (312)
T ss_dssp EEEETT-------------SCEEEEETTTCCEEEEECCSS------------CCCEEEEEECTTSSEEEEE---------
T ss_pred EEEeCC-------------CcEEEEECCCCceeeEEeccC------------CCceEEEEECCCCCEEEEE---------
Confidence 887744 389999998544 33332211 0123468999999977665
Q ss_pred ccccccCCeEEEEecCCCCCCCc-eEEeeccccc--CCeeec-cCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecC
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRY--GGISWC-DDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~--~~~~~S-pDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 501 (953)
+..+.+.+||+ ..++. ..+..+.... ....|+ ++++.|+..+.++ .|.++++.++ +.......
T Consensus 211 ----~~d~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg----~i~vwd~~~~--~~~~~~~~ 277 (312)
T 4ery_A 211 ----TLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN----LVYIWNLQTK--EIVQKLQG 277 (312)
T ss_dssp ----ETTTEEEEEET---TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTS----CEEEEETTTC--CEEEEECC
T ss_pred ----cCCCeEEEEEC---CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCC----EEEEEECCCc--hhhhhhhc
Confidence 44568999996 33332 2233222222 223455 5666666554332 4566676664 33333343
Q ss_pred CCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 502 SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 502 ~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
....+.. ++|+|+++.++...
T Consensus 278 h~~~v~~------~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 278 HTDVVIS------TACHPTENIIASAA 298 (312)
T ss_dssp CSSCEEE------EEECSSSSEEEEEE
T ss_pred cCCcEEE------EeecCcCCceEEEE
Confidence 4333333 78999999888765
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-15 Score=155.33 Aligned_cols=212 Identities=17% Similarity=0.134 Sum_probs=130.2
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|.+++...+-+ . .|.||++||.+... ...| ......|+++||.|+++ |.+|+
T Consensus 9 ~~g~~l~~~~~g~-------~--~~~vvllHG~~~~~----------~~~~----~~~~~~l~~~g~~vi~~---D~~G~ 62 (254)
T 2ocg_A 9 VNGVQLHYQQTGE-------G--DHAVLLLPGMLGSG----------ETDF----GPQLKNLNKKLFTVVAW---DPRGY 62 (254)
T ss_dssp ETTEEEEEEEEEC-------C--SEEEEEECCTTCCH----------HHHC----HHHHHHSCTTTEEEEEE---CCTTS
T ss_pred ECCEEEEEEEecC-------C--CCeEEEECCCCCCC----------ccch----HHHHHHHhhCCCeEEEE---CCCCC
Confidence 3777777655421 1 35789999953110 0001 13345667789999994 55677
Q ss_pred CChhhhh-hh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC------
Q 002209 727 GDEEAND-RF-VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL------ 798 (953)
Q Consensus 727 G~~~~~~-~~-~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~------ 798 (953)
|.+.... .+ ......++.++++++.+.+ .+++.|+||||||.+++.++.++|++++++|++++......
T Consensus 63 G~S~~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 139 (254)
T 2ocg_A 63 GHSRPPDRDFPADFFERDAKDAVDLMKALK---FKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIY 139 (254)
T ss_dssp TTCCSSCCCCCTTHHHHHHHHHHHHHHHTT---CSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhC---CCCEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHH
Confidence 7764321 11 0112233344444444433 36899999999999999999999999999999876432110
Q ss_pred ---CCcC-cccccch-------------hhhh-HHHHHhc-------CcccccCCCCCcEEEEEeCCCCCCCCchHHHHH
Q 002209 799 ---TPFG-FQNEDRT-------------LWEA-TSTYVEM-------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDR 853 (953)
Q Consensus 799 ---~~~~-~~~~~~~-------------~~~~-~~~~~~~-------sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~ 853 (953)
.... +...... .|.. ...+... .....+.++++|+|+++|++|..+| +..+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~ 217 (254)
T 2ocg_A 140 EGIRDVSKWSERTRKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVP--RFHADF 217 (254)
T ss_dssp HTTSCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHGGGGSGGGBSSGGGGGGCCSCEEEEEETTCSSSC--HHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHhcchhhHHHHHHHHHHHHHHHhccCCchhhhhhhcccCCEEEEecCCCccCC--HHHHHH
Confidence 0000 0000000 0000 0011111 1133567889999999999999998 888888
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
+.+.+.. .+++++|++||... .+..+.+.+.+.+||
T Consensus 218 ~~~~~~~----~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl 253 (254)
T 2ocg_A 218 IHKHVKG----SRLHLMPEGKHNLH-LRFADEFNKLAEDFL 253 (254)
T ss_dssp HHHHSTT----CEEEEETTCCTTHH-HHTHHHHHHHHHHHH
T ss_pred HHHhCCC----CEEEEcCCCCCchh-hhCHHHHHHHHHHHh
Confidence 7776643 48899999999864 455677778888886
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-14 Score=151.76 Aligned_cols=212 Identities=14% Similarity=0.141 Sum_probs=134.4
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
+++.+|.+++...+- + .|.||++||.+... ..| ......|+++||.|++ +|.
T Consensus 3 ~~~~~g~~l~y~~~g--------~--g~~vvllHG~~~~~--------------~~w-~~~~~~l~~~g~~vi~---~D~ 54 (274)
T 1a8q_A 3 CTTRDGVEIFYKDWG--------Q--GRPVVFIHGWPLNG--------------DAW-QDQLKAVVDAGYRGIA---HDR 54 (274)
T ss_dssp EECTTSCEEEEEEEC--------S--SSEEEEECCTTCCG--------------GGG-HHHHHHHHHTTCEEEE---ECC
T ss_pred EEccCCCEEEEEecC--------C--CceEEEECCCcchH--------------HHH-HHHHHHHHhCCCeEEE---EcC
Confidence 456788888765541 1 36799999963211 111 2334567889999999 555
Q ss_pred CCCCChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCcccEEEEcccCCCCCC--
Q 002209 724 IGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTL-- 798 (953)
Q Consensus 724 ~G~G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~d~~~-- 798 (953)
+|+|.+... .......++|+.+.++.+ +.+++.|+||||||.+++.+++++ |++++++|++++......
T Consensus 55 ~G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~ 128 (274)
T 1a8q_A 55 RGHGHSTPVWDGYDFDTFADDLNDLLTDL------DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKS 128 (274)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCC
T ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHc------CCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCCCcccccc
Confidence 688877542 123566677877777664 235899999999999999877765 899999999886421100
Q ss_pred --CCcCcccc---------------------------c-----------chhhhh------------HHHHHhcCccccc
Q 002209 799 --TPFGFQNE---------------------------D-----------RTLWEA------------TSTYVEMSPFMSA 826 (953)
Q Consensus 799 --~~~~~~~~---------------------------~-----------~~~~~~------------~~~~~~~sp~~~~ 826 (953)
.+...... . ...|.. ...+...+....+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (274)
T 1a8q_A 129 DKNPDGVPDEVFDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDL 208 (274)
T ss_dssp SSCTTSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHH
T ss_pred ccCcccchHHHHHHHHHHhhccHHHHHHHhcccccccccccccccHHHHHHHHHHhhhcChHHHHHHHhhhhcCcHHHHh
Confidence 00000000 0 000000 0001111223346
Q ss_pred CCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc--cHHHHHHHHHHHHH
Q 002209 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE--SIMHVLWETDRWLQ 895 (953)
Q Consensus 827 ~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~--~~~~~~~~i~~fl~ 895 (953)
.++++|+|+++|++|..+| +....+.+..+. ...++++++++||... .+ ..+.+.+.+.+||+
T Consensus 209 ~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~~~p~~~~~~i~~fl~ 273 (274)
T 1a8q_A 209 KKFDIPTLVVHGDDDQVVP--IDATGRKSAQII---PNAELKVYEGSSHGIA-MVPGDKEKFNRDLLEFLN 273 (274)
T ss_dssp TTCCSCEEEEEETTCSSSC--GGGTHHHHHHHS---TTCEEEEETTCCTTTT-TSTTHHHHHHHHHHHHHT
T ss_pred hcCCCCEEEEecCcCCCCC--cHHHHHHHHhhC---CCceEEEECCCCCcee-cccCCHHHHHHHHHHHhc
Confidence 7889999999999999998 775544443332 2368999999999875 34 67788888998874
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-13 Score=152.17 Aligned_cols=289 Identities=10% Similarity=0.060 Sum_probs=167.1
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce-eecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
.+...+|||||+.|+-.++.. .+--+..+++++...... ....... ......+..++|+||++++..+
T Consensus 32 ~v~~~~fs~dG~~l~~~sd~~---~r~Wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~d~~l~~~s------- 100 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGASSLS---GRCWAGSLWLFKDPCAAPNEGFCSAG-VQTEAGVADLTWVGERGILVAS------- 100 (344)
T ss_dssp EEEEEEECTTSCEEEEEECCS---SSCCCEEEEEESSGGGTTCGGGCSEE-EEESSCEEEEEEETTTEEEEEE-------
T ss_pred CEEEEEECCCCCEEEEEeCCc---eEEeeceeeeeccccccCCcceeeee-eccCCCEEEEEEeCCCeEEEEE-------
Confidence 578899999999888654311 011123445554221111 0000000 0001126689999998655433
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-----eCCC-CcccccccCC
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-----IGPP-AVYTSLDPSP 341 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-----l~~~-~~~~~~~~Sp 341 (953)
..+.|.++|+ +|+... +... ..+..++|||
T Consensus 101 -------------------------------------------~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp 137 (344)
T 4gqb_B 101 -------------------------------------------DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS 137 (344)
T ss_dssp -------------------------------------------TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT
T ss_pred -------------------------------------------CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC
Confidence 2245666677 553221 1123 6788999999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
||++|+..+.+. .|.+||+.++... .+..+. ..+..++|+||++.++...
T Consensus 138 dg~~l~sgs~d~-------------~i~iwd~~~~~~~~~~~~h~-------------~~V~~~~~~~~~~~~l~s~--- 188 (344)
T 4gqb_B 138 SGTQAVSGSKDI-------------CIKVWDLAQQVVLSSYRAHA-------------AQVTCVAASPHKDSVFLSC--- 188 (344)
T ss_dssp TSSEEEEEETTS-------------CEEEEETTTTEEEEEECCCS-------------SCEEEEEECSSCTTEEEEE---
T ss_pred CCCEEEEEeCCC-------------eEEEEECCCCcEEEEEcCcC-------------CceEEEEecCCCCCceeee---
Confidence 999999887443 8999999865543 333322 3456799999998765541
Q ss_pred cCCCcccccccCCeEEEEecCCCCCCCceEEe--ecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEe
Q 002209 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (953)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~--~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 498 (953)
+..+.|.+||+ .++.....+. .....+..++|+|++..++.....+ + .|.++|+.++ +....
T Consensus 189 ---------s~D~~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d-g--~v~~wd~~~~--~~~~~ 252 (344)
T 4gqb_B 189 ---------SEDNRILLWDT--RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN-G--TVSLVDTKST--SCVLS 252 (344)
T ss_dssp ---------ETTSCEEEEET--TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT-S--EEEEEESCC----CCEE
T ss_pred ---------ccccccccccc--cccceeeeeecceeeccceeeeecCCCCcceEEeccC-C--cEEEEECCCC--cEEEE
Confidence 33557889996 2333333332 2233456789999766554443333 2 4666677664 33333
Q ss_pred ecCCCccccCCCCCCCeEeccCCC-EEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCccccee
Q 002209 499 FDRSSEDVYSDPGSPMMRRTSTGT-YVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 577 (953)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~SpDG~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~ 577 (953)
.......+.. +.|+|||. +|+....+ ..|++||+.+++..++....+.
T Consensus 253 ~~~h~~~v~~------v~fsp~g~~~lasgs~D---------------------~~i~vwd~~~~~~~~~~~H~~~---- 301 (344)
T 4gqb_B 253 SAVHSQCVTG------LVFSPHSVPFLASLSED---------------------CSLAVLDSSLSELFRSQAHRDF---- 301 (344)
T ss_dssp EECCSSCEEE------EEECSSSSCCEEEEETT---------------------SCEEEECTTCCEEEEECCCSSC----
T ss_pred EcCCCCCEEE------EEEccCCCeEEEEEeCC---------------------CeEEEEECCCCcEEEEcCCCCC----
Confidence 3333333443 88999996 45554422 1399999999887665433322
Q ss_pred eeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002209 578 TTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (953)
Q Consensus 578 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g 619 (953)
+.. .+|+|+++.++.+.+... .|.++++.+.
T Consensus 302 -V~~-------v~~sp~~~~llas~s~D~---~v~~w~v~~~ 332 (344)
T 4gqb_B 302 -VRD-------ATWSPLNHSLLTTVGWDH---QVVHHVVPTE 332 (344)
T ss_dssp -EEE-------EEECSSSTTEEEEEETTS---CEEEEECCC-
T ss_pred -EEE-------EEEeCCCCeEEEEEcCCC---eEEEEECCCC
Confidence 222 468999988877666443 4777776553
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-16 Score=158.07 Aligned_cols=190 Identities=15% Similarity=0.118 Sum_probs=131.7
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccch-HHHHHHHcCcEEEEcCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST-SVLLWLARGFAILGGPTTPIIG 725 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~G~~V~~~~~~~~~G 725 (953)
.+|.+++++.+.|++ ..+.|+||++||+.... ..| ... ....|+++||.|+.++. +|
T Consensus 14 ~~g~~l~~~~~~p~~-----~~~~~~vv~~hG~~~~~-----------~~~---~~~~~~~~l~~~G~~v~~~d~---~g 71 (210)
T 1imj_A 14 VQGQALFFREALPGS-----GQARFSVLLLHGIRFSS-----------ETW---QNLGTLHRLAQAGYRAVAIDL---PG 71 (210)
T ss_dssp ETTEEECEEEEECSS-----SCCSCEEEECCCTTCCH-----------HHH---HHHTHHHHHHHTTCEEEEECC---TT
T ss_pred eCCeEEEEEEeCCCC-----CCCCceEEEECCCCCcc-----------cee---ecchhHHHHHHCCCeEEEecC---CC
Confidence 388999999998864 22478999999963111 001 111 35678889999999555 56
Q ss_pred CCChhhhh--hhHHHHH--HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCc
Q 002209 726 EGDEEAND--RFVEQLV--ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF 801 (953)
Q Consensus 726 ~G~~~~~~--~~~~~~~--~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~ 801 (953)
+|.+.... ....... .|+.++++.+ +.++++++|||+||.+++.++.++|++++++|+++|......
T Consensus 72 ~g~s~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~~--- 142 (210)
T 1imj_A 72 LGHSKEAAAPAPIGELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI--- 142 (210)
T ss_dssp SGGGTTSCCSSCTTSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGGS---
T ss_pred CCCCCCCCCcchhhhcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCccccc---
Confidence 66654322 1112222 5555555544 246899999999999999999999999999999988643110
Q ss_pred CcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc
Q 002209 802 GFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (953)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (953)
....+.++++|+|+++|++|. ++ .+.+.++ +.+ ...+++++++++|... .+
T Consensus 143 --------------------~~~~~~~~~~p~l~i~g~~D~-~~--~~~~~~~-~~~----~~~~~~~~~~~~H~~~-~~ 193 (210)
T 1imj_A 143 --------------------NAANYASVKTPALIVYGDQDP-MG--QTSFEHL-KQL----PNHRVLIMKGAGHPCY-LD 193 (210)
T ss_dssp --------------------CHHHHHTCCSCEEEEEETTCH-HH--HHHHHHH-TTS----SSEEEEEETTCCTTHH-HH
T ss_pred --------------------cchhhhhCCCCEEEEEcCccc-CC--HHHHHHH-hhC----CCCCEEEecCCCcchh-hc
Confidence 112234578999999999999 87 7776665 433 3479999999999853 34
Q ss_pred cHHHHHHHHHHHHHH
Q 002209 882 SIMHVLWETDRWLQK 896 (953)
Q Consensus 882 ~~~~~~~~i~~fl~~ 896 (953)
....+.+.+.+||++
T Consensus 194 ~~~~~~~~i~~fl~~ 208 (210)
T 1imj_A 194 KPEEWHTGLLDFLQG 208 (210)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 456677888888865
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-14 Score=153.84 Aligned_cols=211 Identities=11% Similarity=0.126 Sum_probs=131.2
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
....+|..++.... + . -|.||++||.+... ..| . .....|+++||.|++ +|.
T Consensus 11 ~~~~~g~~l~y~~~---G-----~--g~~vvllHG~~~~~-----------~~w---~-~~~~~l~~~g~~vi~---~D~ 62 (281)
T 3fob_A 11 TENQAPIEIYYEDH---G-----T--GKPVVLIHGWPLSG-----------RSW---E-YQVPALVEAGYRVIT---YDR 62 (281)
T ss_dssp EETTEEEEEEEEEE---S-----S--SEEEEEECCTTCCG-----------GGG---T-TTHHHHHHTTEEEEE---ECC
T ss_pred CCCCCceEEEEEEC---C-----C--CCeEEEECCCCCcH-----------HHH---H-HHHHHHHhCCCEEEE---eCC
Confidence 34556666665443 1 1 35688899964221 112 1 224567889999999 555
Q ss_pred CCCCChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh-CCCcccEEEEcccCCCCCCC-
Q 002209 724 IGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH-APHLFCCGIARSGAYNRTLT- 799 (953)
Q Consensus 724 ~G~G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~~~~d~~~~- 799 (953)
+|+|.+..+. .......+|+.+.++.+ +.+++.|+||||||.+++.+++. .|++++++|+.++.......
T Consensus 63 ~G~G~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~~~~~~~~ 136 (281)
T 3fob_A 63 RGFGKSSQPWEGYEYDTFTSDLHQLLEQL------ELQNVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKS 136 (281)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCC
T ss_pred CCCCCCCCCccccCHHHHHHHHHHHHHHc------CCCcEEEEEECccHHHHHHHHHHccccceeEEEEecCCCcchhcc
Confidence 7888875432 23566677777776664 23589999999999977766555 58999999988764221100
Q ss_pred ---CcCccc-c------------------------------cch--------hhh------------hHHHHHhcCcccc
Q 002209 800 ---PFGFQN-E------------------------------DRT--------LWE------------ATSTYVEMSPFMS 825 (953)
Q Consensus 800 ---~~~~~~-~------------------------------~~~--------~~~------------~~~~~~~~sp~~~ 825 (953)
+..... . ... .|. ....+...+....
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 216 (281)
T 3fob_A 137 EDHPEGALDDATIETFKSGVINDRLAFLDEFTKGFFAAGDRTDLVSESFRLYNWDIAAGASPKGTLDCITAFSKTDFRKD 216 (281)
T ss_dssp SSSTTCSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCHHH
T ss_pred ccccccccchhHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchHHHHHHhhhhhcccChHHHHHHHHHccccchhhh
Confidence 000000 0 000 000 0001112223345
Q ss_pred cCCCCCcEEEEEeCCCCCCCCchHHHHHHH-HHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFF-NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 826 ~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~-~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
+.++++|+||+||++|..+| ++.+.+++ +.+.. .++++++++||.. ..+..+.+.+.+.+||+
T Consensus 217 l~~i~~P~Lii~G~~D~~~p--~~~~~~~~~~~~p~----~~~~~i~~~gH~~-~~e~p~~~~~~i~~Fl~ 280 (281)
T 3fob_A 217 LEKFNIPTLIIHGDSDATVP--FEYSGKLTHEAIPN----SKVALIKGGPHGL-NATHAKEFNEALLLFLK 280 (281)
T ss_dssp HTTCCSCEEEEEETTCSSSC--GGGTHHHHHHHSTT----CEEEEETTCCTTH-HHHTHHHHHHHHHHHHC
T ss_pred hhhcCCCEEEEecCCCCCcC--HHHHHHHHHHhCCC----ceEEEeCCCCCch-hhhhHHHHHHHHHHHhh
Confidence 67899999999999999998 87664443 43332 5899999999986 35667788888888874
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-15 Score=159.86 Aligned_cols=213 Identities=19% Similarity=0.155 Sum_probs=135.6
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|.+++...+-+. . +.|.||++||++.... .+ . .....++++||.|++ +|.+|+
T Consensus 12 ~~g~~l~~~~~g~~-----~--~~~~vvllHG~~~~~~-----------~~---~-~~~~~l~~~g~~vi~---~D~~G~ 66 (293)
T 1mtz_A 12 VNGIYIYYKLCKAP-----E--EKAKLMTMHGGPGMSH-----------DY---L-LSLRDMTKEGITVLF---YDQFGC 66 (293)
T ss_dssp ETTEEEEEEEECCS-----S--CSEEEEEECCTTTCCS-----------GG---G-GGGGGGGGGTEEEEE---ECCTTS
T ss_pred ECCEEEEEEEECCC-----C--CCCeEEEEeCCCCcch-----------hH---H-HHHHHHHhcCcEEEE---ecCCCC
Confidence 46778776665321 1 1367899999642211 11 1 112245678999999 555688
Q ss_pred CChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC-----
Q 002209 727 GDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL----- 798 (953)
Q Consensus 727 G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~----- 798 (953)
|.+.... ......++|+.+.++.+. +.+++.|+||||||.+++.+|.++|++++++|++++......
T Consensus 67 G~S~~~~~~~~~~~~~~~dl~~~~~~l~-----~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~ 141 (293)
T 1mtz_A 67 GRSEEPDQSKFTIDYGVEEAEALRSKLF-----GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEM 141 (293)
T ss_dssp TTSCCCCGGGCSHHHHHHHHHHHHHHHH-----TTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHH
T ss_pred ccCCCCCCCcccHHHHHHHHHHHHHHhc-----CCCcEEEEEecHHHHHHHHHHHhCchhhheEEecCCccChHHHHHHH
Confidence 8775432 235666778777777762 124899999999999999999999999999999987643100
Q ss_pred ------CCcC-------------cccc-c--------------chhhhh-H-H---------HHHh--------------
Q 002209 799 ------TPFG-------------FQNE-D--------------RTLWEA-T-S---------TYVE-------------- 819 (953)
Q Consensus 799 ------~~~~-------------~~~~-~--------------~~~~~~-~-~---------~~~~-------------- 819 (953)
.+.. +... . ...|.. . . .+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (293)
T 1mtz_A 142 NRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIK 221 (293)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTT
T ss_pred HHHHHhcCHHHHHHHHHhhccCCcChHHHHHHHHHHHHhhcccccCchHHHHHhHhhhccchhhhhccCcceeccccccc
Confidence 0000 0000 0 000000 0 0 0110
Q ss_pred -cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 820 -MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 820 -~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
.+....+.++++|+|+++|++| .++ +..+.++.+.+.. .++++++++||... .+..+.+.+.+.+||.++
T Consensus 222 ~~~~~~~l~~i~~P~lii~G~~D-~~~--~~~~~~~~~~~~~----~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~~ 292 (293)
T 1mtz_A 222 DWDITDKISAIKIPTLITVGEYD-EVT--PNVARVIHEKIAG----SELHVFRDCSHLTM-WEDREGYNKLLSDFILKH 292 (293)
T ss_dssp TCBCTTTGGGCCSCEEEEEETTC-SSC--HHHHHHHHHHSTT----CEEEEETTCCSCHH-HHSHHHHHHHHHHHHHTC
T ss_pred CCChhhhhccCCCCEEEEeeCCC-CCC--HHHHHHHHHhCCC----ceEEEeCCCCCCcc-ccCHHHHHHHHHHHHHhc
Confidence 1112345567899999999999 666 7777777776542 58999999999863 456778889999999764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-14 Score=157.59 Aligned_cols=240 Identities=12% Similarity=0.136 Sum_probs=154.4
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCC
Q 002209 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (953)
Q Consensus 109 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~ 188 (953)
..+..++|||||++|++...+ +.|++|++.. +.......+.. ..
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d---------------------------------~~v~i~~~~~-~~~~~~~~~~~--h~ 52 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNN---------------------------------HEVHIYEKSG-NKWVQVHELKE--HN 52 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSS---------------------------------SEEEEEEEET-TEEEEEEEEEC--CS
T ss_pred CCeEEEEECCCCCEEEEEeCC---------------------------------CEEEEEeCCC-CcEEeeeeecC--CC
Confidence 367889999999999988654 3689999853 11002333433 22
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+....|+|||+.|+.... ...|.++++++++......... ....+..+.|+|||+.|++..
T Consensus 53 ~~v~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~------ 115 (372)
T 1k8k_C 53 GQVTGVDWAPDSNRIVTCGT---------DRNAYVWTLKGRTWKPTLVILR--INRAARCVRWAPNEKKFAVGS------ 115 (372)
T ss_dssp SCEEEEEEETTTTEEEEEET---------TSCEEEEEEETTEEEEEEECCC--CSSCEEEEEECTTSSEEEEEE------
T ss_pred CcccEEEEeCCCCEEEEEcC---------CCeEEEEECCCCeeeeeEEeec--CCCceeEEEECCCCCEEEEEe------
Confidence 47889999999999988552 4567777777776332221111 111277899999999998761
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc----eeEeCCC--CcccccccCC
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----VKEIGPP--AVYTSLDPSP 341 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~----~~~l~~~--~~~~~~~~Sp 341 (953)
..+.|.++++ .+. ...+... ..+..++|+|
T Consensus 116 -------------------------------------------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 116 -------------------------------------------GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp -------------------------------------------TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred -------------------------------------------CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC
Confidence 1134555555 443 2333222 6788999999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccC-------------------ceEEEeccCCCcccCCccccccccCcc
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-------------------IFVRELCDLPLAEDIPIAFNSVRKGMR 402 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-------------------~~~~~l~~~~~~~~~p~~~~~~~~~~~ 402 (953)
||++|+....+ +.|.+||+.. .....+.. ....+.
T Consensus 153 ~~~~l~~~~~d-------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~ 206 (372)
T 1k8k_C 153 NSVLLAAGSCD-------------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-------------SCGWVH 206 (372)
T ss_dssp TSSEEEEEETT-------------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-------------CSSCEE
T ss_pred CCCEEEEEcCC-------------CCEEEEEcccccccccccccccccccchhhheEecCC-------------CCCeEE
Confidence 99999888744 3899999641 22222221 123456
Q ss_pred ceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceE
Q 002209 403 SINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTR 482 (953)
Q Consensus 403 ~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 482 (953)
.+.|+|||+.++.. +..+.+.+||+ .++.....+..+...+..+.|+|||+.|+.. .++ ...
T Consensus 207 ~~~~~~~~~~l~~~-------------~~d~~i~i~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~--~i~ 268 (372)
T 1k8k_C 207 GVCFSANGSRVAWV-------------SHDSTVCLADA--DKKMAVATLASETLPLLAVTFITESSLVAAG-HDC--FPV 268 (372)
T ss_dssp EEEECSSSSEEEEE-------------ETTTEEEEEEG--GGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTS--SCE
T ss_pred EEEECCCCCEEEEE-------------eCCCEEEEEEC--CCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCC--eEE
Confidence 79999999876665 44567999996 2333334455555567789999999977765 332 246
Q ss_pred EEEEcC
Q 002209 483 TWVISP 488 (953)
Q Consensus 483 l~~~d~ 488 (953)
+|.++.
T Consensus 269 i~~~~~ 274 (372)
T 1k8k_C 269 LFTYDS 274 (372)
T ss_dssp EEEEET
T ss_pred EEEccC
Confidence 777765
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-14 Score=152.53 Aligned_cols=211 Identities=16% Similarity=0.146 Sum_probs=138.6
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
+...||.+++...+-+. ..|+||++||.... ...|. .....| +++|.|++ +|.
T Consensus 9 ~~~~~g~~l~y~~~G~~--------~~p~lvl~hG~~~~--------------~~~w~-~~~~~L-~~~~~vi~---~D~ 61 (266)
T 3om8_A 9 LATSDGASLAYRLDGAA--------EKPLLALSNSIGTT--------------LHMWD-AQLPAL-TRHFRVLR---YDA 61 (266)
T ss_dssp EECTTSCEEEEEEESCT--------TSCEEEEECCTTCC--------------GGGGG-GGHHHH-HTTCEEEE---ECC
T ss_pred EeccCCcEEEEEecCCC--------CCCEEEEeCCCccC--------------HHHHH-HHHHHh-hcCcEEEE---EcC
Confidence 56679999987776432 15789999995321 11111 223344 45899999 555
Q ss_pred CCCCChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC-
Q 002209 724 IGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP- 800 (953)
Q Consensus 724 ~G~G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~- 800 (953)
+|+|.|.... .......+|+.+.++.+ ..+++.|+||||||.+++.++.++|++++++|++++........
T Consensus 62 rG~G~S~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~~ 135 (266)
T 3om8_A 62 RGHGASSVPPGPYTLARLGEDVLELLDAL------EVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQ 135 (266)
T ss_dssp TTSTTSCCCCSCCCHHHHHHHHHHHHHHT------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchhH
Confidence 7888875432 23566777777776665 23589999999999999999999999999999987642211000
Q ss_pred c-----------Cccc----------------ccchhhhh---------H-------HHHHhcCcccccCCCCCcEEEEE
Q 002209 801 F-----------GFQN----------------EDRTLWEA---------T-------STYVEMSPFMSANKLKKPILLVH 837 (953)
Q Consensus 801 ~-----------~~~~----------------~~~~~~~~---------~-------~~~~~~sp~~~~~~i~~P~Li~~ 837 (953)
+ .... ......+. . ..+...+....+.++++|+||++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lvi~ 215 (266)
T 3om8_A 136 WDERIAAVLQAEDMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIA 215 (266)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHSCHHHHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTTTGGGCCSCEEEEE
T ss_pred HHHHHHHHHccccHHHHHHHHHHHhcChhhhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhhHhcCCCCCEEEEE
Confidence 0 0000 00000000 0 00111122345678899999999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
|++|..+| +..++.+.+.+... ++++++ +||.. ..+..+.+.+.+.+||.
T Consensus 216 G~~D~~~~--~~~~~~l~~~ip~a----~~~~i~-~gH~~-~~e~p~~~~~~i~~Fl~ 265 (266)
T 3om8_A 216 GAYDTVTA--ASHGELIAASIAGA----RLVTLP-AVHLS-NVEFPQAFEGAVLSFLG 265 (266)
T ss_dssp ETTCSSSC--HHHHHHHHHHSTTC----EEEEES-CCSCH-HHHCHHHHHHHHHHHHT
T ss_pred eCCCCCCC--HHHHHHHHHhCCCC----EEEEeC-CCCCc-cccCHHHHHHHHHHHhc
Confidence 99999998 88888888777543 888888 69975 46777888888888874
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-13 Score=156.44 Aligned_cols=322 Identities=9% Similarity=0.027 Sum_probs=183.6
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEEC--CCCceeecccCCCcc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV--DTGKARPLFQSPDIY 241 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~--~~g~~~~lt~~~~~~ 241 (953)
.|.+||..+ + .....+ +.+..+...+|||||++|+.... ...|.++|+ .+++...-......
T Consensus 160 ~V~v~D~~t-~--~~~~~i---~~g~~~~~v~~spdg~~l~v~~~---------d~~V~v~D~~~~t~~~~~~i~~g~~- 223 (543)
T 1nir_A 160 QIALVDGDS-K--KIVKVI---DTGYAVHISRMSASGRYLLVIGR---------DARIDMIDLWAKEPTKVAEIKIGIE- 223 (543)
T ss_dssp EEEEEETTT-C--CEEEEE---ECSTTEEEEEECTTSCEEEEEET---------TSEEEEEETTSSSCEEEEEEECCSE-
T ss_pred eEEEEECCC-c--eEEEEE---ecCcccceEEECCCCCEEEEECC---------CCeEEEEECcCCCCcEEEEEecCCC-
Confidence 678999743 2 112233 22233667889999999887652 368999999 67665432222221
Q ss_pred ccccccceEEec----CCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEE
Q 002209 242 LNAIFDNFVWVN----NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLV 317 (953)
Q Consensus 242 ~~~~~~~~~wsp----Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~ 317 (953)
...++||| ||++|+++. +....+.
T Consensus 224 ----p~~va~sp~~~~dg~~l~v~~------------------------------------------------~~~~~v~ 251 (543)
T 1nir_A 224 ----ARSVESSKFKGYEDRYTIAGA------------------------------------------------YWPPQFA 251 (543)
T ss_dssp ----EEEEEECCSTTCTTTEEEEEE------------------------------------------------EESSEEE
T ss_pred ----cceEEeCCCcCCCCCEEEEEE------------------------------------------------ccCCeEE
Confidence 56889999 999998761 0224566
Q ss_pred EEEc-CCceeE-eCCC------------CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEecc
Q 002209 318 LVSL-DGTVKE-IGPP------------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD 383 (953)
Q Consensus 318 ~~~~-~g~~~~-l~~~------------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~ 383 (953)
++|. +++... +... ..+..+.+||||+.+++.... .+.|++||........++.
T Consensus 252 v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------------~g~i~vvd~~~~~~l~~~~ 319 (543)
T 1nir_A 252 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------------TGKVLLVNYKDIDNLTVTS 319 (543)
T ss_dssp EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------------TTEEEEEECTTSSSCEEEE
T ss_pred EEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC------------CCeEEEEEecCCCcceeEE
Confidence 7777 664332 2211 145678899999988776522 3489999987533211111
Q ss_pred CCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE-Eeecc--cccCC
Q 002209 384 LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-LHKLD--LRYGG 460 (953)
Q Consensus 384 ~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~-l~~~~--~~~~~ 460 (953)
.+. ...++.+.|+|||+.++.. . ...+.|.++|+ ..++... +.... .....
T Consensus 320 i~~-----------~~~~~~~~~spdg~~l~va-~-----------~~~~~v~v~D~---~tg~l~~~i~~g~~ph~g~g 373 (543)
T 1nir_A 320 IGA-----------APFLHDGGWDSSHRYFMTA-A-----------NNSNKVAVIDS---KDRRLSALVDVGKTPHPGRG 373 (543)
T ss_dssp EEC-----------CSSCCCEEECTTSCEEEEE-E-----------GGGTEEEEEET---TTTEEEEEEECSSSBCCTTC
T ss_pred ecc-----------CcCccCceECCCCCEEEEE-e-----------cCCCeEEEEEC---CCCeEEEeeccCCCCCCCCC
Confidence 111 1234578999999966443 1 23457888996 4443332 22111 11123
Q ss_pred eee-ccCCceEEEEEecccCceEEEEEcCCCCC-----CCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCC
Q 002209 461 ISW-CDDSLALVYESWYKTRRTRTWVISPGSKD-----VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDE 534 (953)
Q Consensus 461 ~~~-SpDg~~l~~~~~~~~~~~~l~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~ 534 (953)
..| +||+..++++...+.. .|.+++.++.. .+........... ...+.++|||++|+......
T Consensus 374 ~~~~~p~~g~~~~s~~~~d~--~V~v~d~~~~~~~~~~~~~v~~l~~~g~~------~~~v~~~pdg~~l~v~~~~~--- 442 (543)
T 1nir_A 374 ANFVHPKYGPVWSTSHLGDG--SISLIGTDPKNHPQYAWKKVAELQGQGGG------SLFIKTHPKSSHLYVDTTFN--- 442 (543)
T ss_dssp EEEEETTTEEEEEEEBSSSS--EEEEEECCTTTCTTTBTSEEEEEECSCSC------CCCEECCTTCCEEEECCTTC---
T ss_pred cccCCCCCccEEEeccCCCc--eEEEEEeCCCCCchhcCeEEEEEEcCCCC------ceEEEcCCCCCcEEEecCCC---
Confidence 344 6887776665542323 45555555410 1222222221111 12288999999988654100
Q ss_pred CcEEEEecCCCCCCC-CCCeEEEEECCCCceE-EEec-------cCcccceeeeEeeccCCccccccccCCEEEEEEecC
Q 002209 535 GTYILLNGNGATPEG-NIPFLDLFDINTGSKE-RIWE-------SDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESK 605 (953)
Q Consensus 535 ~~~~~~~~~~~~~~~-~~~~L~~~d~~~~~~~-~l~~-------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 605 (953)
+.. ....|.+||+++++.. .+.. .++. ..+. .+.|++||+.+++..++.
T Consensus 443 ------------~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~---~~~~-------~~~~~~~g~~~~~s~~~~ 500 (543)
T 1nir_A 443 ------------PDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA---KRVV-------QPEYNKRGDEVWFSVWNG 500 (543)
T ss_dssp ------------SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC---CEEE-------EEEECSSSSEEEEEEECC
T ss_pred ------------CCcccCceEEEEECCCCCCCeEEeechhhcccCCCC---CceE-------eccCCCCCCEEEEEeecC
Confidence 000 0125999999988754 3321 0100 0111 257999999999987654
Q ss_pred -CCCceEEEEECCCCCeeEE
Q 002209 606 -TENTQYYIQSWPDKKSCQI 624 (953)
Q Consensus 606 -~~p~~l~~~~~~~g~~~~L 624 (953)
.....|.++|..+++.+..
T Consensus 501 ~~~~~~i~v~D~~t~~~~~~ 520 (543)
T 1nir_A 501 KNDSSALVVVDDKTLKLKAV 520 (543)
T ss_dssp TTSCCEEEEEETTTTEEEEE
T ss_pred CCCCCeEEEEECCCceEEEe
Confidence 3357899999999876543
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-14 Score=155.12 Aligned_cols=210 Identities=15% Similarity=0.089 Sum_probs=136.8
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|.+++...+-|++ .|.||++||.+.. ...|....+..|+++||.|++ +|.+|+
T Consensus 8 ~~g~~l~y~~~G~~~--------~~~vvllHG~~~~--------------~~~w~~~~~~~L~~~G~~vi~---~D~rG~ 62 (298)
T 1q0r_A 8 SGDVELWSDDFGDPA--------DPALLLVMGGNLS--------------ALGWPDEFARRLADGGLHVIR---YDHRDT 62 (298)
T ss_dssp ETTEEEEEEEESCTT--------SCEEEEECCTTCC--------------GGGSCHHHHHHHHTTTCEEEE---ECCTTS
T ss_pred cCCeEEEEEeccCCC--------CCeEEEEcCCCCC--------------ccchHHHHHHHHHhCCCEEEe---eCCCCC
Confidence 588888877664321 4679999996321 111222234678888999999 555688
Q ss_pred CChhh--h-h--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCC-CC----
Q 002209 727 GDEEA--N-D--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY-NR---- 796 (953)
Q Consensus 727 G~~~~--~-~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~-d~---- 796 (953)
|.+.. . . .......+|+.+.++.+ +.+++.|+||||||.+++.++.++|++++++|++++.. ..
T Consensus 63 G~S~~~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~ 136 (298)
T 1q0r_A 63 GRSTTRDFAAHPYGFGELAADAVAVLDGW------GVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDA 136 (298)
T ss_dssp TTSCCCCTTTSCCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHH
T ss_pred CCCCCCCCCcCCcCHHHHHHHHHHHHHHh------CCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccCCCccccc
Confidence 87754 1 1 23566777887777765 23589999999999999999999999999999987654 21
Q ss_pred -------------CCCCcC------c-c----cccc------------------hhhhh--H-----HHHHhc-C-----
Q 002209 797 -------------TLTPFG------F-Q----NEDR------------------TLWEA--T-----STYVEM-S----- 821 (953)
Q Consensus 797 -------------~~~~~~------~-~----~~~~------------------~~~~~--~-----~~~~~~-s----- 821 (953)
...... + . .... ..+.. . ..+... .
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (298)
T 1q0r_A 137 NIERVMRGEPTLDGLPGPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEP 216 (298)
T ss_dssp HHHHHHHTCCCSSCSCCCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCC
T ss_pred chhhhhhhhhhhcccccccHHHHHHHhccCcccccHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHhhccCCccchh
Confidence 000000 0 0 0000 00000 0 000110 0
Q ss_pred -----------cccc-cCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHH
Q 002209 822 -----------PFMS-ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889 (953)
Q Consensus 822 -----------p~~~-~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~ 889 (953)
.... +.++++|+|+++|++|..+| +..++++.+.+. ..+++++|++||.. .+.+.+.
T Consensus 217 ~~~~~~~~~~~~~~~~l~~i~~P~Lvi~G~~D~~~~--~~~~~~~~~~~p----~~~~~~i~~~gHe~-----p~~~~~~ 285 (298)
T 1q0r_A 217 YAHYSLTLPPPSRAAELREVTVPTLVIQAEHDPIAP--APHGKHLAGLIP----TARLAEIPGMGHAL-----PSSVHGP 285 (298)
T ss_dssp CGGGGCCCCCGGGGGGGGGCCSCEEEEEETTCSSSC--TTHHHHHHHTST----TEEEEEETTCCSSC-----CGGGHHH
T ss_pred hhhhhhhcCcccccccccccCCCEEEEEeCCCccCC--HHHHHHHHHhCC----CCEEEEcCCCCCCC-----cHHHHHH
Confidence 0123 66789999999999999998 888777766553 36899999999932 2466788
Q ss_pred HHHHHHHhc
Q 002209 890 TDRWLQKYC 898 (953)
Q Consensus 890 i~~fl~~~l 898 (953)
+.+||.+++
T Consensus 286 i~~fl~~~~ 294 (298)
T 1q0r_A 286 LAEVILAHT 294 (298)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 899998875
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.5e-15 Score=154.90 Aligned_cols=198 Identities=15% Similarity=0.142 Sum_probs=131.3
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh--h-hhHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN--D-RFVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~--~-~~~~~~~~D~~~~ 746 (953)
.|+||++||..... ..| . ..... .+++|.|++ +|.+|+|.+... . .......+|+.+.
T Consensus 15 ~~~vvllHG~~~~~-----------~~w---~-~~~~~-L~~~~~vi~---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~ 75 (268)
T 3v48_A 15 APVVVLISGLGGSG-----------SYW---L-PQLAV-LEQEYQVVC---YDQRGTGNNPDTLAEDYSIAQMAAELHQA 75 (268)
T ss_dssp CCEEEEECCTTCCG-----------GGG---H-HHHHH-HHTTSEEEE---CCCTTBTTBCCCCCTTCCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCccH-----------HHH---H-HHHHH-HhhcCeEEE---ECCCCCCCCCCCccccCCHHHHHHHHHHH
Confidence 57899999953110 111 1 22333 456899999 566788887542 1 2356667777666
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC-cCcc---------------cc----
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-FGFQ---------------NE---- 806 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~-~~~~---------------~~---- 806 (953)
++.+ ..+++.|+||||||.+++.++.++|++++++|++++........ ..+. ..
T Consensus 76 l~~l------~~~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (268)
T 3v48_A 76 LVAA------GIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLF 149 (268)
T ss_dssp HHHT------TCCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHc------CCCCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhh
Confidence 5543 23589999999999999999999999999999988743211000 0000 00
Q ss_pred -cchhhh--------------------------hHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHH
Q 002209 807 -DRTLWE--------------------------ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (953)
Q Consensus 807 -~~~~~~--------------------------~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~ 859 (953)
....|. ....+...+....+.++++|+|+++|++|..+| +..+.++.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p--~~~~~~l~~~~p 227 (268)
T 3v48_A 150 LYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVP--TACSSELHAALP 227 (268)
T ss_dssp HSCHHHHHTTHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGGGCCSCEEEEEETTCSSSC--THHHHHHHHHCS
T ss_pred cCchhhhhcccccchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhhcCCCCeEEEEeCCCcccC--HHHHHHHHHhCC
Confidence 000000 000111222334567889999999999999998 888888877664
Q ss_pred hCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 860 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
. .++++++++||.. ..+..+.+.+.+.+||.+.+.
T Consensus 228 ~----~~~~~~~~~GH~~-~~e~p~~~~~~i~~fl~~~~~ 262 (268)
T 3v48_A 228 D----SQKMVMPYGGHAC-NVTDPETFNALLLNGLASLLH 262 (268)
T ss_dssp S----EEEEEESSCCTTH-HHHCHHHHHHHHHHHHHHHHH
T ss_pred c----CeEEEeCCCCcch-hhcCHHHHHHHHHHHHHHhcc
Confidence 3 5899999999975 467788899999999987653
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=167.98 Aligned_cols=225 Identities=12% Similarity=0.012 Sum_probs=143.7
Q ss_pred CceEEEEEEcC-CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcE-
Q 002209 637 LQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA- 714 (953)
Q Consensus 637 ~~~~~~~~~~~-dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~- 714 (953)
.+++.++|.+. .|..+.+++|+|+++. .+++|+|+++||+.+. ..+ ........|+++|++
T Consensus 166 G~v~~~~~~S~~~g~~~~~~vy~P~~~~---~~~~PvlvllHG~~~~--------~~~------~~~~~~~~l~~~g~~~ 228 (403)
T 3c8d_A 166 IPAKEIIWKSERLKNSRRVWIFTTGDVT---AEERPLAVLLDGEFWA--------QSM------PVWPVLTSLTHRQQLP 228 (403)
T ss_dssp SCCEEEEEEETTTTEEEEEEEEEC--------CCCCEEEESSHHHHH--------HTS------CCHHHHHHHHHTTSSC
T ss_pred CceEEEEEEccccCCcEEEEEEeCCCCC---CCCCCEEEEeCCHHHh--------hcC------cHHHHHHHHHHcCCCC
Confidence 35677788765 6778999999998763 2359999999995211 100 012345678888874
Q ss_pred ---EEEcCCCCCCCCCChhh-hhhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEE
Q 002209 715 ---ILGGPTTPIIGEGDEEA-NDRFVEQLVACAEAAVEEVVRRG--VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (953)
Q Consensus 715 ---V~~~~~~~~~G~G~~~~-~~~~~~~~~~D~~~~~~~l~~~~--~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (953)
|+.+++.+..+...... ...+...... +++.++.++. ..|+++++|+|+||||++|+.++.++|++|++++
T Consensus 229 p~iVV~~d~~~~~~r~~~~~~~~~~~~~l~~---el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~ 305 (403)
T 3c8d_A 229 PAVYVLIDAIDTTHRAHELPCNADFWLAVQQ---ELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVL 305 (403)
T ss_dssp SCEEEEECCCSHHHHHHHSSSCHHHHHHHHH---THHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEE
T ss_pred CeEEEEECCCCCccccccCCChHHHHHHHHH---HHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEE
Confidence 88876643111100000 1112222222 4556666653 2578899999999999999999999999999999
Q ss_pred EcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002209 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (953)
Q Consensus 789 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (953)
+++|.+++..... . ...... +.+.. . .......|++++||+.|..+ ..++++++++|++.|+++++.
T Consensus 306 ~~sg~~~~~~~~~--~-~~~~~~---~~~~~-~---~~~~~~~~i~l~~G~~D~~~---~~~~~~l~~~L~~~G~~v~~~ 372 (403)
T 3c8d_A 306 SQSGSYWWPHRGG--Q-QEGVLL---EKLKA-G---EVSAEGLRIVLEAGIREPMI---MRANQALYAQLHPIKESIFWR 372 (403)
T ss_dssp EESCCTTTTCTTS--S-SCCHHH---HHHHT-T---SSCCCSCEEEEEEESSCHHH---HHHHHHHHHHTGGGTTSEEEE
T ss_pred EeccccccCCCCC--C-cHHHHH---HHHHh-c---cccCCCceEEEEeeCCCchh---HHHHHHHHHHHHhCCCCEEEE
Confidence 9999865322100 0 001111 11111 1 12345689999999998653 688999999999999999999
Q ss_pred EeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 869 ILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 869 ~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
+||| +|.+. .....+...+.||.+..
T Consensus 373 ~~~G-gH~~~---~w~~~l~~~l~~l~~~~ 398 (403)
T 3c8d_A 373 QVDG-GHDAL---CWRGGLMQGLIDLWQPL 398 (403)
T ss_dssp EESC-CSCHH---HHHHHHHHHHHHHHGGG
T ss_pred EeCC-CCCHH---HHHHHHHHHHHHHhccc
Confidence 9999 69752 23455666777776643
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-15 Score=157.58 Aligned_cols=222 Identities=12% Similarity=0.090 Sum_probs=133.1
Q ss_pred ceEEEEEEcCC-CcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEE
Q 002209 638 QKELIKYQRKD-GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAI 715 (953)
Q Consensus 638 ~~~~~~~~~~d-g~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V 715 (953)
..+.+++.+.. |..+..++|+|+++++.+ ++|+|+++||+.. +..........+++ .+.+|
T Consensus 12 ~~~~~~~~S~~~~~~~~~~vylP~~y~~~~--~yPvly~l~G~~~---------------~~~~~~~~~~~l~~~~~~iv 74 (278)
T 2gzs_A 12 HFSATSFDSVDGTRHYRVWTAVPNTTAPAS--GYPILYMLDGNAV---------------MDRLDDELLKQLSEKTPPVI 74 (278)
T ss_dssp EEEEEEEECTTSSCEEEEEEEEESSCCCTT--CEEEEEESSHHHH---------------HHHCCHHHHHHHTTSCCCEE
T ss_pred ceEEEEEEcCCCCceEEEEEECCCCCCCCC--CCCEEEEeeChhH---------------HHHHHHHHHHHhccCCCeEE
Confidence 56778888776 679999999999987644 5999887777421 00001122334554 57777
Q ss_pred EEcCCCCCCC-----CCChhhhhh----------------hHHHHHHHH--HHHHHHHHHcCCCCCCcEEEEEeChHHHH
Q 002209 716 LGGPTTPIIG-----EGDEEANDR----------------FVEQLVACA--EAAVEEVVRRGVAHPSKIAVGGHSYGAFM 772 (953)
Q Consensus 716 ~~~~~~~~~G-----~G~~~~~~~----------------~~~~~~~D~--~~~~~~l~~~~~~d~~~i~l~G~S~GG~~ 772 (953)
+.+++.+... ++....+.. -....+.+. .+.+.++.++..+|++|++|+|+||||++
T Consensus 75 V~v~~~~~~~~~~~~R~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~ 154 (278)
T 2gzs_A 75 VAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLF 154 (278)
T ss_dssp EEEEESSSSSCCHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHH
T ss_pred EEEcCCCCCcCcccccccccCCCCccccccccccCcCCCcCCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHH
Confidence 7644321100 000000000 000111111 12334455556688889999999999999
Q ss_pred HHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCC------C
Q 002209 773 TANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG------T 846 (953)
Q Consensus 773 a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~------~ 846 (953)
|++++.+ |+.|+++++.+|...+.. .... .......+. ..-..|+++.||+.|..++ .
T Consensus 155 a~~~~~~-p~~f~~~~~~s~~~~~~~---------~~~~---~~~~~~~~~---~~~~~~i~l~~G~~d~~~~~~~~~~~ 218 (278)
T 2gzs_A 155 VLDSWLS-SSYFRSYYSASPSLGRGY---------DALL---SRVTAVEPL---QFCTKHLAIMEGSATQGDNRETHAVG 218 (278)
T ss_dssp HHHHHHH-CSSCSEEEEESGGGSTTH---------HHHH---HHHHTSCTT---TTTTCEEEEEECCC-----------C
T ss_pred HHHHHhC-ccccCeEEEeCcchhcCc---------chHH---HHHHHhhcc---CCCCCcEEEEecCccccccccchhhh
Confidence 9999999 999999999998643210 0000 011111110 1124689999999997631 0
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
+..++++++++|++.|+++++.++||++|.+... .. +...+.||.+
T Consensus 219 ~~~~~~~~~~~L~~~g~~~~~~~~~g~~H~~~~~---~~-~~~~l~fl~~ 264 (278)
T 2gzs_A 219 VLSKIHTTLTILKDKGVNAVFWDFPNLGHGPMFN---AS-FRQALLDISG 264 (278)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECTTCCHHHHHH---HH-HHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcCCCeeEEEEcCCCCccchhH---HH-HHHHHHHHhh
Confidence 1688999999999999999999999999975321 12 2344556654
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.61 E-value=6e-15 Score=159.04 Aligned_cols=213 Identities=12% Similarity=0.083 Sum_probs=140.0
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCC
Q 002209 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (953)
Q Consensus 648 dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G 727 (953)
+|..+.....- +.|+||++||..... ..|. .....|+++||.|+++| .+|+|
T Consensus 17 ~g~~l~~~~~g----------~~~~vv~~HG~~~~~-----------~~~~----~~~~~l~~~g~~v~~~d---~~G~G 68 (309)
T 3u1t_A 17 EGATIAYVDEG----------SGQPVLFLHGNPTSS-----------YLWR----NIIPYVVAAGYRAVAPD---LIGMG 68 (309)
T ss_dssp TTEEEEEEEEE----------CSSEEEEECCTTCCG-----------GGGT----TTHHHHHHTTCEEEEEC---CTTST
T ss_pred CCeEEEEEEcC----------CCCEEEEECCCcchh-----------hhHH----HHHHHHHhCCCEEEEEc---cCCCC
Confidence 78887765542 146899999964211 1121 23456688999999954 46777
Q ss_pred Chhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCccc
Q 002209 728 DEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN 805 (953)
Q Consensus 728 ~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~ 805 (953)
.+.... ........|+.++++.+ +.+++.|+||||||.+++.++.++|++++++|++++..........+..
T Consensus 69 ~S~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 142 (309)
T 3u1t_A 69 DSAKPDIEYRLQDHVAYMDGFIDAL------GLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEA 142 (309)
T ss_dssp TSCCCSSCCCHHHHHHHHHHHHHHH------TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCTTTCSBSCSGG
T ss_pred CCCCCCcccCHHHHHHHHHHHHHHc------CCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCCCccccccccc
Confidence 775432 23566677777776665 2368999999999999999999999999999999876542210000000
Q ss_pred c--------------------------------------cchhhhhHHHHHh-----------------c----------
Q 002209 806 E--------------------------------------DRTLWEATSTYVE-----------------M---------- 820 (953)
Q Consensus 806 ~--------------------------------------~~~~~~~~~~~~~-----------------~---------- 820 (953)
. .....+....+.. .
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (309)
T 3u1t_A 143 MGPQLGPLFRDLRTADVGEKMVLDGNFFVETILPEMGVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAE 222 (309)
T ss_dssp GHHHHHHHHHHHTSTTHHHHHHTTTCHHHHTHHHHTSCSSCCCHHHHHHHHTTCCSTGGGHHHHHHHHHSCBTTBSHHHH
T ss_pred cchhhhHHHHHHhccchhhhhccccceehhhhcccccccccCCHHHHHHHHHhcCCccccchHHHHHHHhccccccchhh
Confidence 0 0000000000100 0
Q ss_pred ----CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 821 ----SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 821 ----sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
+....+.++++|+|+++|++|..+| ...+.++.+.+.. .++++++++||... .+....+.+.+.+||++
T Consensus 223 ~~~~~~~~~l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~~~----~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~ 295 (309)
T 3u1t_A 223 AEVLKNGEWLMASPIPKLLFHAEPGALAP--KPVVDYLSENVPN----LEVRFVGAGTHFLQ-EDHPHLIGQGIADWLRR 295 (309)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHHHSTT----EEEEEEEEESSCHH-HHCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccCCCCEEEEecCCCCCCC--HHHHHHHHhhCCC----CEEEEecCCcccch-hhCHHHHHHHHHHHHHh
Confidence 0112245678999999999999998 8888788777643 47777799999753 56678888999999999
Q ss_pred hccCC
Q 002209 897 YCVSN 901 (953)
Q Consensus 897 ~l~~~ 901 (953)
.....
T Consensus 296 ~~~~~ 300 (309)
T 3u1t_A 296 NKPHA 300 (309)
T ss_dssp HCCCC
T ss_pred cchhh
Confidence 86543
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=154.14 Aligned_cols=209 Identities=15% Similarity=0.097 Sum_probs=136.1
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCC
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (953)
..+|.+++...+- . -|.||++||.+... ..| ......|+++||.|++ +|.+|
T Consensus 9 ~~~g~~l~y~~~g--------~--g~pvvllHG~~~~~-----------~~~----~~~~~~L~~~g~~vi~---~D~~G 60 (277)
T 1brt_A 9 NSTSIDLYYEDHG--------T--GQPVVLIHGFPLSG-----------HSW----ERQSAALLDAGYRVIT---YDRRG 60 (277)
T ss_dssp TTEEEEEEEEEEC--------S--SSEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEE---ECCTT
T ss_pred cCCCcEEEEEEcC--------C--CCeEEEECCCCCcH-----------HHH----HHHHHHHhhCCCEEEE---eCCCC
Confidence 4566677655441 1 23488999964211 111 2345567888999999 55578
Q ss_pred CCChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-cccEEEEcccCCCCCCC---
Q 002209 726 EGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLT--- 799 (953)
Q Consensus 726 ~G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~d~~~~--- 799 (953)
+|.+.... .......+|+.+.++.+ +.+++.|+||||||.+++.++.++|+ +++++|++++.......
T Consensus 61 ~G~S~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~ 134 (277)
T 1brt_A 61 FGQSSQPTTGYDYDTFAADLNTVLETL------DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDD 134 (277)
T ss_dssp STTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTT
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHh------CCCceEEEEECccHHHHHHHHHHcCcceEEEEEEecCcCcccccccc
Confidence 88875432 23567778888887775 23589999999999999999999998 99999999874321110
Q ss_pred -CcC-cccc-----------cc-h--------hh------------hhHHHHH------------------hcCcccccC
Q 002209 800 -PFG-FQNE-----------DR-T--------LW------------EATSTYV------------------EMSPFMSAN 827 (953)
Q Consensus 800 -~~~-~~~~-----------~~-~--------~~------------~~~~~~~------------------~~sp~~~~~ 827 (953)
+.. .... .. . .+ +..+.+. ..+....+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (277)
T 1brt_A 135 NPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIP 214 (277)
T ss_dssp BTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGG
T ss_pred CccccccHHHHHHHHHHHhcCchhhHHHHHHHHhhccccccccCCHHHHHHHHHHHhccchHHHHHHHHHHhccchhhcc
Confidence 000 0000 00 0 00 0000000 011223456
Q ss_pred CCCCcEEEEEeCCCCCCCCchHHH-HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 828 KLKKPILLVHGEEDNNSGTLTMQS-DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 828 ~i~~P~Li~~G~~D~~v~~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
++++|+|+++|++|..+| ++.+ ..+.+.+.. .++++++++||... .+..+.+.+.+.+||.
T Consensus 215 ~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~~~----~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 276 (277)
T 1brt_A 215 RIDVPALILHGTGDRTLP--IENTARVFHKALPS----AEYVEVEGAPHGLL-WTHAEEVNTALLAFLA 276 (277)
T ss_dssp GCCSCEEEEEETTCSSSC--GGGTHHHHHHHCTT----SEEEEETTCCTTHH-HHTHHHHHHHHHHHHH
T ss_pred cCCCCeEEEecCCCccCC--hHHHHHHHHHHCCC----CcEEEeCCCCcchh-hhCHHHHHHHHHHHHh
Confidence 789999999999999998 8877 777666543 48899999999863 4567788888999885
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.9e-14 Score=159.91 Aligned_cols=294 Identities=13% Similarity=0.114 Sum_probs=174.4
Q ss_pred CCCCceecC-CCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCC
Q 002209 110 PLPALSFSP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (953)
Q Consensus 110 ~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~ 188 (953)
.+..++|+| +++.||..+.+ +.|.|||+.. + .....+....+.
T Consensus 121 ~V~~l~~~P~~~~~lasGs~d---------------------------------g~i~lWd~~~-~--~~~~~~~~~gH~ 164 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKG---------------------------------GDIMLWNFGI-K--DKPTFIKGIGAG 164 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETT---------------------------------SCEEEECSSC-C--SCCEEECCCSSS
T ss_pred CEEEEEEeCCCCCEEEEEeCC---------------------------------CEEEEEECCC-C--CceeEEEccCCC
Confidence 366789999 56677777665 4789999853 2 111222212233
Q ss_pred CcccceEecc-CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 189 AKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 189 ~~~~~~~wSP-DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
..+....|+| ||+.|+..+ .+..|.++|++++..+.+...... +..+..++|+|||+.|+...
T Consensus 165 ~~V~~l~f~p~~~~~l~s~s---------~D~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~----- 228 (435)
T 4e54_B 165 GSITGLKFNPLNTNQFYASS---------MEGTTRLQDFKGNILRVFASSDTI--NIWFCSLDVSASSRMVVTGD----- 228 (435)
T ss_dssp CCCCEEEECSSCTTEEEEEC---------SSSCEEEEETTSCEEEEEECCSSC--SCCCCCEEEETTTTEEEEEC-----
T ss_pred CCEEEEEEeCCCCCEEEEEe---------CCCEEEEeeccCCceeEEeccCCC--CccEEEEEECCCCCEEEEEe-----
Confidence 4799999999 677776643 245677889888766554433221 11245789999999998761
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcE
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~ 345 (953)
..+.|.++|+ +.....+... ..+..++|+|+|+.
T Consensus 229 --------------------------------------------~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 229 --------------------------------------------NVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDW 264 (435)
T ss_dssp --------------------------------------------SSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSS
T ss_pred --------------------------------------------CCCcEeeeccCcceeEEEecccceEEeeeecCCCce
Confidence 2246777888 4445555444 77889999999997
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
++++... .+.|.+||+...... .+... .+....+..++|+|||+.|+..
T Consensus 265 ~~~s~s~------------d~~v~iwd~~~~~~~~~~~~~----------~~h~~~v~~~~~spdg~~l~s~-------- 314 (435)
T 4e54_B 265 FLATASV------------DQTVKIWDLRQVRGKASFLYS----------LPHRHPVNAACFSPDGARLLTT-------- 314 (435)
T ss_dssp EEEEEET------------TSBCCEEETTTCCSSSCCSBC----------CBCSSCEEECCBCTTSSEEEEE--------
T ss_pred EEEEecC------------cceeeEEecccccccceEEEe----------eeccccccceeECCCCCeeEEE--------
Confidence 6665422 237999999743321 11111 1122345678999999977655
Q ss_pred cccccccCCeEEEEecCCCCCCCceEEeeccc------ccCCeeeccCCceEEEEEeccc--------CceEEEEEcCCC
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL------RYGGISWCDDSLALVYESWYKT--------RRTRTWVISPGS 490 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~------~~~~~~~SpDg~~l~~~~~~~~--------~~~~l~~~d~~~ 490 (953)
+..+.|.+|++ .++.....+..... ......|+|++..++.....+. ....|.+++..+
T Consensus 315 -----~~D~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~ 387 (435)
T 4e54_B 315 -----DQKSEIRVYSA--SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS 387 (435)
T ss_dssp -----ESSSCEEEEES--SSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS
T ss_pred -----cCCCEEEEEEC--CCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC
Confidence 44567889996 33333333322211 1234578888888777643221 112366667766
Q ss_pred CCCCcEEeecCCCccccCCCCCCCe-EeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceE
Q 002209 491 KDVAPRILFDRSSEDVYSDPGSPMM-RRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (953)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~p~~-~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~ 565 (953)
+. ....+.......+.. + .|||||++|+... + ..|++||+.+++.+
T Consensus 388 g~-~~~~l~~~~~~~v~s------~~~fspdg~~lasg~-d---------------------~~i~iW~~~~gk~r 434 (435)
T 4e54_B 388 GK-MMCQLYDPESSGISS------LNEFNPMGDTLASAM-G---------------------YHILIWSQQEARTR 434 (435)
T ss_dssp CC-EEEEECCSSCCCCCC------EEEECTTSSCEEEEC-S---------------------SEEEECCCC-----
T ss_pred Cc-EEEEEeCCCCCcEEE------EEEECCCCCEEEEEc-C---------------------CcEEEEECCcCeee
Confidence 41 122223333322222 3 6999999987643 1 14899999888765
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.6e-14 Score=155.98 Aligned_cols=275 Identities=13% Similarity=0.106 Sum_probs=165.9
Q ss_pred CCCCceecCCC-CEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCC
Q 002209 110 PLPALSFSPQR-DKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (953)
Q Consensus 110 ~~~~~~~SPDG-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~ 188 (953)
.+..++||||| ++|+....+ +.|.||++.. + .....+......
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~d---------------------------------g~i~iwd~~~-~--~~~~~~~~~~h~ 118 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKG---------------------------------GDIILWDYDV-Q--NKTSFIQGMGPG 118 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBT---------------------------------SCEEEEETTS-T--TCEEEECCCSTT
T ss_pred CEEEEEECCCCCCEEEEEcCC---------------------------------CeEEEEeCCC-c--ccceeeecCCcC
Confidence 46678999999 888887765 3679999953 2 112222211233
Q ss_pred CcccceEecc-CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 189 AKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 189 ~~~~~~~wSP-DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
..+....|+| |++.|+... ....|.++|+.++....+..... ....+..++|+|||+.|+...
T Consensus 119 ~~v~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~----- 182 (383)
T 3ei3_B 119 DAITGMKFNQFNTNQLFVSS---------IRGATTLRDFSGSVIQVFAKTDS--WDYWYCCVDVSVSRQMLATGD----- 182 (383)
T ss_dssp CBEEEEEEETTEEEEEEEEE---------TTTEEEEEETTSCEEEEEECCCC--SSCCEEEEEEETTTTEEEEEE-----
T ss_pred CceeEEEeCCCCCCEEEEEe---------CCCEEEEEECCCCceEEEeccCC--CCCCeEEEEECCCCCEEEEEC-----
Confidence 4789999999 667666644 25678888988766555543331 112267899999999888661
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcC-CceeEeCCC-CcccccccCCCCc-
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD-GTVKEIGPP-AVYTSLDPSPDEK- 344 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~-g~~~~l~~~-~~~~~~~~SpDG~- 344 (953)
..+.|.++|++ .....+... ..+..++|+|||+
T Consensus 183 --------------------------------------------~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 183 --------------------------------------------STGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp --------------------------------------------TTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTT
T ss_pred --------------------------------------------CCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCC
Confidence 22567788884 445555544 7788999999999
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccC----ceEEEeccCCCcccCCccccccccCccceeecc-CCCCceEEEEe
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDG----IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS-DKPSTLYWAET 419 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g----~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wsp-Dg~~i~~~~~~ 419 (953)
.|+..+.+ +.|.+||+.. +.......+ ...+..++|+| ||+.++..
T Consensus 219 ~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~~l~~~--- 269 (383)
T 3ei3_B 219 LMATSSVD-------------ATVKLWDLRNIKDKNSYIAEMPH-------------EKPVNAAYFNPTDSTKLLTT--- 269 (383)
T ss_dssp EEEEEETT-------------SEEEEEEGGGCCSTTCEEEEEEC-------------SSCEEEEEECTTTSCEEEEE---
T ss_pred EEEEEeCC-------------CEEEEEeCCCCCcccceEEEecC-------------CCceEEEEEcCCCCCEEEEE---
Confidence 55555533 3899999974 222221111 13456899999 99877665
Q ss_pred ccCCCcccccccCCeEEEEecCCCCCCCceEEeeccc------ccCCeeeccCCceEEEEEecc-----cCceEEEEEcC
Q 002209 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL------RYGGISWCDDSLALVYESWYK-----TRRTRTWVISP 488 (953)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~------~~~~~~~SpDg~~l~~~~~~~-----~~~~~l~~~d~ 488 (953)
+..+.|.+||+ .++.....+..... ......|+|++..++.....+ .....+.++|+
T Consensus 270 ----------~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~ 337 (383)
T 3ei3_B 270 ----------DQRNEIRVYSS--YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDA 337 (383)
T ss_dssp ----------ESSSEEEEEET--TBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEET
T ss_pred ----------cCCCcEEEEEC--CCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEec
Confidence 44568999996 33333344433221 111245666665544332110 01125667777
Q ss_pred CCCCCCcEEeecCC-CccccCCCCCCCeEeccCCCEEEEEe
Q 002209 489 GSKDVAPRILFDRS-SEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 489 ~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.++ +........ ...... .+.|+|||++|+...
T Consensus 338 ~~~--~~~~~l~~~~~~~~~~-----~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 338 NSG--GLVHQLRDPNAAGIIS-----LNKFSPTGDVLASGM 371 (383)
T ss_dssp TTC--CEEEEECBTTBCSCCC-----EEEECTTSSEEEEEE
T ss_pred CCC--ceeeeecCCCCCceEE-----EEEEecCccEEEEec
Confidence 664 222222221 111111 158999999987774
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-13 Score=153.09 Aligned_cols=287 Identities=12% Similarity=0.126 Sum_probs=169.6
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCc--------------cccccccceEEecC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI--------------YLNAIFDNFVWVNN 254 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~--------------~~~~~~~~~~wspD 254 (953)
..+...+|||||++||... ...+.++++.+|+.......... .....+..++|+||
T Consensus 65 ~~V~~v~fspdg~~la~g~----------~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGC----------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp SCCCEEEECTTSSEEEEEC----------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred CEEEEEEECCCCCEEEEEc----------CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence 4688899999999998743 23566677777664332211100 00011557899999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCC-
Q 002209 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP- 331 (953)
Q Consensus 255 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~- 331 (953)
|+.|+... ..+.|.++|+ +++... +...
T Consensus 135 g~~l~s~~-------------------------------------------------~d~~i~iwd~~~~~~~~~~~~h~ 165 (393)
T 1erj_A 135 GKFLATGA-------------------------------------------------EDRLIRIWDIENRKIVMILQGHE 165 (393)
T ss_dssp SSEEEEEE-------------------------------------------------TTSCEEEEETTTTEEEEEECCCS
T ss_pred CCEEEEEc-------------------------------------------------CCCeEEEEECCCCcEEEEEccCC
Confidence 99998761 2245777888 675443 4434
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeecc-CC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS-DK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wsp-Dg 410 (953)
..+..++|+|||++|+..+.+. .|.+||+.+++........ .++..++|+| ||
T Consensus 166 ~~v~~~~~~p~~~~l~s~s~d~-------------~v~iwd~~~~~~~~~~~~~-------------~~v~~~~~~~~~~ 219 (393)
T 1erj_A 166 QDIYSLDYFPSGDKLVSGSGDR-------------TVRIWDLRTGQCSLTLSIE-------------DGVTTVAVSPGDG 219 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-------------EEEEEETTTTEEEEEEECS-------------SCEEEEEECSTTC
T ss_pred CCEEEEEEcCCCCEEEEecCCC-------------cEEEEECCCCeeEEEEEcC-------------CCcEEEEEECCCC
Confidence 7788999999999998877443 8999999866543322211 2346789999 88
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEE-------eecccccCCeeeccCCceEEEEEecccCceE
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EIL-------HKLDLRYGGISWCDDSLALVYESWYKTRRTR 482 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l-------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 482 (953)
+.++.. +..+.+.+||+ ..+.. ..+ ..+...+..++|+|||+.|+..+.++. .+
T Consensus 220 ~~l~~~-------------s~d~~v~iwd~---~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~--v~ 281 (393)
T 1erj_A 220 KYIAAG-------------SLDRAVRVWDS---ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS--VK 281 (393)
T ss_dssp CEEEEE-------------ETTSCEEEEET---TTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE--EE
T ss_pred CEEEEE-------------cCCCcEEEEEC---CCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE--EE
Confidence 766655 44567888986 33332 223 233455677999999999887765442 24
Q ss_pred EEEEcCCCCCC----------CcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCC
Q 002209 483 TWVISPGSKDV----------APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIP 552 (953)
Q Consensus 483 l~~~d~~~~~~----------~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (953)
+| |+..... ............+.. +.|+|+|++|+....+ .
T Consensus 282 ~w--d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~------~~~~~~~~~l~sgs~D---------------------~ 332 (393)
T 1erj_A 282 LW--NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS------VATTQNDEYILSGSKD---------------------R 332 (393)
T ss_dssp EE--EC---------------CEEEEEECCSSCEEE------EEECGGGCEEEEEETT---------------------S
T ss_pred EE--ECCCCCCcccccCCCCCcceEEEecccCcEEE------EEECCCCCEEEEEeCC---------------------C
Confidence 55 4433210 001111122222222 7899999988876532 2
Q ss_pred eEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEEC
Q 002209 553 FLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSW 616 (953)
Q Consensus 553 ~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~ 616 (953)
.+++||+.+++.......... .+..+ .......|+|+++.++ +.+.. ..+.+|+.
T Consensus 333 ~v~iwd~~~~~~~~~l~~h~~----~v~~v-~~~~~~~~~p~~~~l~-sgs~D---g~i~iW~~ 387 (393)
T 1erj_A 333 GVLFWDKKSGNPLLMLQGHRN----SVISV-AVANGSSLGPEYNVFA-TGSGD---CKARIWKY 387 (393)
T ss_dssp EEEEEETTTCCEEEEEECCSS----CEEEE-EECSSCTTCTTCEEEE-EEETT---SEEEEEEE
T ss_pred eEEEEECCCCeEEEEECCCCC----CEEEE-EecCCcCcCCCCCEEE-EECCC---CcEEECcc
Confidence 499999998887655443322 11111 1112234667776554 33322 34666654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-13 Score=148.20 Aligned_cols=260 Identities=13% Similarity=0.081 Sum_probs=146.6
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECC--CCceeecccCCCcc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD--TGKARPLFQSPDIY 241 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~--~g~~~~lt~~~~~~ 241 (953)
.|++|++..+| ..+.+........+..++|||||++|++... .+ ..|.+++++ +++.+.+.......
T Consensus 16 ~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~------~~--~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 16 QIHVWNLNHEG---ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR------PE--FRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEEECTTS---CEEEEEEEECSSCCCCEEECTTSSEEEEEET------TT--TEEEEEEECTTTCCEEEEEEEECSS
T ss_pred eEEEEEECCCC---cEEEeeeEecCCCCceEEECCCCCEEEEeec------CC--CeEEEEEecCCCCceeeccccccCC
Confidence 67999984323 2222222233346788999999999988653 12 455555544 77755443222111
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 321 (953)
.+..++|+|||+.|+++.. ..+.|.++++
T Consensus 85 ---~~~~~~~s~dg~~l~~~~~------------------------------------------------~~~~i~~~d~ 113 (343)
T 1ri6_A 85 ---SLTHISTDHQGQFVFVGSY------------------------------------------------NAGNVSVTRL 113 (343)
T ss_dssp ---CCSEEEECTTSSEEEEEET------------------------------------------------TTTEEEEEEE
T ss_pred ---CCcEEEEcCCCCEEEEEec------------------------------------------------CCCeEEEEEC
Confidence 1568999999998887610 1234556666
Q ss_pred -CCc---ee-EeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ceEEEec--cCCCcccCCcc
Q 002209 322 -DGT---VK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELC--DLPLAEDIPIA 393 (953)
Q Consensus 322 -~g~---~~-~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~--~~~~~~~~p~~ 393 (953)
+|. .. .+.....+..++|||||++|++.... .+.|.+|+++. +....+. .....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------~~~v~~~d~~~~~~~~~~~~~~~~~~------ 175 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK------------QDRICLFTVSDDGHLVAQDPAEVTTV------ 175 (343)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG------------GTEEEEEEECTTSCEEEEEEEEEECS------
T ss_pred CCCccccccccccCCCCceEEEECCCCCEEEEecCC------------CCEEEEEEecCCCceeeecccccccC------
Confidence 442 22 22222567789999999999777522 23799999975 5444322 11100
Q ss_pred ccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec---c------cccCCeeec
Q 002209 394 FNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL---D------LRYGGISWC 464 (953)
Q Consensus 394 ~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~---~------~~~~~~~~S 464 (953)
....++.++|+|||+.+++.. ...+.+.+++++. .+++...+... . .....++|+
T Consensus 176 ---~~~~~~~~~~~pdg~~l~~~~------------~~~~~i~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 239 (343)
T 1ri6_A 176 ---EGAGPRHMVFHPNEQYAYCVN------------ELNSSVDVWELKD-PHGNIECVQTLDMMPENFSDTRWAADIHIT 239 (343)
T ss_dssp ---TTCCEEEEEECTTSSEEEEEE------------TTTTEEEEEESSC-TTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred ---CCCCcceEEECCCCCEEEEEe------------CCCCEEEEEEecC-CCCcEEEEeeccccCccccccCCccceEEC
Confidence 002345789999999766551 1345788888621 22333322111 1 112248999
Q ss_pred cCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCC-CccccCCCCCCCeEeccCCCEEEEEe
Q 002209 465 DDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS-SEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 465 pDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
|||++|+++...+ ....+|.++..++ ....+.... ...... +.|+|||++|+...
T Consensus 240 ~dg~~l~v~~~~~-~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~------~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 240 PDGRHLYACDRTA-SLITVFSVSEDGS--VLSKEGFQPTETQPRG------FNVDHSGKYLIAAG 295 (343)
T ss_dssp TTSSEEEEEETTT-TEEEEEEECTTSC--CEEEEEEEECSSSCCC------EEECTTSSEEEEEC
T ss_pred CCCCEEEEEecCC-CEEEEEEEcCCCC--ceEEeeeecCCCccce------EEECCCCCEEEEec
Confidence 9999987665333 3234555543343 222221111 111111 78999999888765
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.1e-15 Score=156.18 Aligned_cols=202 Identities=13% Similarity=0.120 Sum_probs=129.2
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|.++.+..+.|++ .|+||++||.+... ..| ......|+++||.|+.+|. +|+
T Consensus 11 ~~g~~l~~~~~g~~~--------~~~vv~~hG~~~~~-----------~~~----~~~~~~l~~~G~~v~~~d~---~G~ 64 (286)
T 3qit_A 11 FGGNQICLCSWGSPE--------HPVVLCIHGILEQG-----------LAW----QEVALPLAAQGYRVVAPDL---FGH 64 (286)
T ss_dssp ETTEEEEEEEESCTT--------SCEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEEECC---TTS
T ss_pred cCCceEEEeecCCCC--------CCEEEEECCCCccc-----------chH----HHHHHHhhhcCeEEEEECC---CCC
Confidence 488899988886532 57899999964211 111 2456678899999999554 577
Q ss_pred CChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC-c
Q 002209 727 GDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-F 801 (953)
Q Consensus 727 G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~-~ 801 (953)
|.+.... ........|+.++++.+ +.+++.++|||+||.+++.++.++|++++++|++++........ .
T Consensus 65 G~s~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 138 (286)
T 3qit_A 65 GRSSHLEMVTSYSSLTFLAQIDRVIQEL------PDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKE 138 (286)
T ss_dssp TTSCCCSSGGGCSHHHHHHHHHHHHHHS------CSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCC---C
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhc------CCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCCCccccch
Confidence 7664422 22445555655555443 34689999999999999999999999999999999875532211 0
Q ss_pred C--------------------cccccc---------hhh--hhHHHH---------------------------------
Q 002209 802 G--------------------FQNEDR---------TLW--EATSTY--------------------------------- 817 (953)
Q Consensus 802 ~--------------------~~~~~~---------~~~--~~~~~~--------------------------------- 817 (953)
. +..... ..+ .....+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (286)
T 3qit_A 139 SAVNQLTTCLDYLSSTPQHPIFPDVATAASRLRQAIPSLSEEFSYILAQRITQPNQGGVRWSWDAIIRTRSILGLNNLPG 218 (286)
T ss_dssp CHHHHHHHHHHHHTCCCCCCCBSSHHHHHHHHHHHSTTSCHHHHHHHHHHTEEEETTEEEECSCGGGGGHHHHTTTSCTT
T ss_pred hhhHHHHHHHHHHhccccccccccHHHHHHHhhcCCcccCHHHHHHHhhccccccccceeeeechhhhcccccccccccc
Confidence 0 000000 000 000000
Q ss_pred HhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHH
Q 002209 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLW 888 (953)
Q Consensus 818 ~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~ 888 (953)
...+....+.++++|+|+++|++|..+| .+...++.+.+.. ++++++++ ||... .++.+.+.+
T Consensus 219 ~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~----~~~~~~~g-gH~~~-~e~p~~~~~ 281 (286)
T 3qit_A 219 GRSQYLEMLKSIQVPTTLVYGDSSKLNR--PEDLQQQKMTMTQ----AKRVFLSG-GHNLH-IDAAAALAS 281 (286)
T ss_dssp HHHHHHHHHHHCCSCEEEEEETTCCSSC--HHHHHHHHHHSTT----SEEEEESS-SSCHH-HHTHHHHHH
T ss_pred chhHHHHHHhccCCCeEEEEeCCCcccC--HHHHHHHHHHCCC----CeEEEeeC-CchHh-hhChHHHHH
Confidence 1111222345689999999999999998 8888887776643 48999999 99763 334434333
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-13 Score=149.06 Aligned_cols=265 Identities=10% Similarity=0.088 Sum_probs=166.6
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+....|||||+.|+... ....|.++|+.+++........... +..++|+|||+.|+...
T Consensus 56 ~~v~~~~~s~d~~~l~s~s---------~Dg~v~iWd~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~s~~------ 116 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSAS---------QDGKLIIWDSYTTNKVHAIPLRSSW----VMTCAYAPSGNYVACGG------ 116 (340)
T ss_dssp SCEEEEEECTTSSEEEEEE---------TTTEEEEEETTTCCEEEEEECSSSC----EEEEEECTTSSEEEEEE------
T ss_pred CceEEEEECCCCCEEEEEe---------CCCcEEEEECCCCCcceEeecCCcc----EEEEEECCCCCEEEEEe------
Confidence 4688899999999988755 2567888898887654433322222 67899999999998761
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-----eeEeCCC-CcccccccCC
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-----VKEIGPP-AVYTSLDPSP 341 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-----~~~l~~~-~~~~~~~~Sp 341 (953)
..+.+.++++ +++ .+.+... +.+....|++
T Consensus 117 -------------------------------------------~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (340)
T 1got_B 117 -------------------------------------------LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153 (340)
T ss_dssp -------------------------------------------TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE
T ss_pred -------------------------------------------CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC
Confidence 1134555565 331 1223333 6677888999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
|++ |+..+.+ +.|.+||+..+... .+..+. ..+..++|+|||+.++..
T Consensus 154 ~~~-l~s~s~d-------------~~i~~wd~~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~l~sg---- 202 (340)
T 1got_B 154 DNQ-IVTSSGD-------------TTCALWDIETGQQTTTFTGHT-------------GDVMSLSLAPDTRLFVSG---- 202 (340)
T ss_dssp TTE-EEEEETT-------------SCEEEEETTTTEEEEEECCCS-------------SCEEEEEECTTSSEEEEE----
T ss_pred CCc-EEEEECC-------------CcEEEEECCCCcEEEEEcCCC-------------CceEEEEECCCCCEEEEE----
Confidence 987 5555533 38999999865533 333221 335679999999865544
Q ss_pred cCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeec
Q 002209 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD 500 (953)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 500 (953)
+..+.+.+||+ .++.....+..+...+..++|+|||+.|+..+.++ .+.++|+.++ +......
T Consensus 203 ---------~~d~~v~~wd~--~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~----~v~iwd~~~~--~~~~~~~ 265 (340)
T 1got_B 203 ---------ACDASAKLWDV--REGMCRQTFTGHESDINAICFFPNGNAFATGSDDA----TCRLFDLRAD--QELMTYS 265 (340)
T ss_dssp ---------ETTSCEEEEET--TTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTTT--EEEEEEC
T ss_pred ---------eCCCcEEEEEC--CCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC----cEEEEECCCC--cEEEEEc
Confidence 44568899996 23333344556667788899999999988876544 3444555543 2222221
Q ss_pred CC--CccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceee
Q 002209 501 RS--SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYET 578 (953)
Q Consensus 501 ~~--~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~ 578 (953)
.. ...+.. +.|+|||++|+....+ ..+++||+.+++......+... .
T Consensus 266 ~~~~~~~v~~------~~~s~~g~~l~~g~~d---------------------~~i~vwd~~~~~~~~~~~~h~~----~ 314 (340)
T 1got_B 266 HDNIICGITS------VSFSKSGRLLLAGYDD---------------------FNCNVWDALKADRAGVLAGHDN----R 314 (340)
T ss_dssp CTTCCSCEEE------EEECTTSSEEEEEETT---------------------SEEEEEETTTCCEEEEEECCSS----C
T ss_pred cCCcccceEE------EEECCCCCEEEEECCC---------------------CeEEEEEcccCcEeeEeecCCC----c
Confidence 11 111222 7899999999887632 2499999987776544333221 1
Q ss_pred eEeeccCCccccccccCCEEEEE
Q 002209 579 TVALMSDQTEGDLYLNQLKILTS 601 (953)
Q Consensus 579 ~~~~~~~~~~~~~s~dg~~l~~~ 601 (953)
+.. .+|++||..++..
T Consensus 315 v~~-------~~~s~dg~~l~s~ 330 (340)
T 1got_B 315 VSC-------LGVTDDGMAVATG 330 (340)
T ss_dssp EEE-------EEECTTSSCEEEE
T ss_pred EEE-------EEEcCCCCEEEEE
Confidence 121 3688888866643
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-14 Score=157.70 Aligned_cols=248 Identities=15% Similarity=0.127 Sum_probs=151.0
Q ss_pred ceEEEEEEcCC--CcE--EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCc--CCCCcccCCCCCCC----CccchHHHH
Q 002209 638 QKELIKYQRKD--GVQ--LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSK--DAAGQVRGSPNEFP----RIGSTSVLL 707 (953)
Q Consensus 638 ~~~~~~~~~~d--g~~--~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~ 707 (953)
...++.|.+.| |.. +.+.++.|.+.. .+.|+|.|.||-..... .++.....+...-. .+.......
T Consensus 74 ~a~ri~Y~std~~G~p~~~~gtv~~P~~~~----~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~~~ 149 (462)
T 3guu_A 74 ASFQLQYRTTNTQNEAVADVATVWIPAKPA----SPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPIIIG 149 (462)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEECSSCC----SSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHHHH
T ss_pred eEEEEEEEEECCCCCEEEEEEEEEecCCCC----CCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHHHH
Confidence 45667776554 543 788999998632 24899999999532110 00000111100000 011123455
Q ss_pred H-HHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEEEeChHHHHHHHHHHhC----C
Q 002209 708 W-LARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVA-HPSKIAVGGHSYGAFMTANLLAHA----P 781 (953)
Q Consensus 708 l-a~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~-d~~~i~l~G~S~GG~~a~~~a~~~----p 781 (953)
| +++||+|+.+|+ .|.|..+.........+.|.++++..+. .+ ...+++++|||+||..+++++... |
T Consensus 150 ~~l~~G~~Vv~~Dy---~G~G~~y~~~~~~~~~vlD~vrAa~~~~---~~~~~~~v~l~G~S~GG~aal~aa~~~~~yap 223 (462)
T 3guu_A 150 WALQQGYYVVSSDH---EGFKAAFIAGYEEGMAILDGIRALKNYQ---NLPSDSKVALEGYSGGAHATVWATSLAESYAP 223 (462)
T ss_dssp HHHHTTCEEEEECT---TTTTTCTTCHHHHHHHHHHHHHHHHHHT---TCCTTCEEEEEEETHHHHHHHHHHHHHHHHCT
T ss_pred HHHhCCCEEEEecC---CCCCCcccCCcchhHHHHHHHHHHHHhc---cCCCCCCEEEEeeCccHHHHHHHHHhChhhcC
Confidence 7 899999999555 5666554433322234445555544443 23 247999999999999999988754 3
Q ss_pred C-cccEEEEcccCCCCCCC-------Cc-C------------ccc----------------------c------------
Q 002209 782 H-LFCCGIARSGAYNRTLT-------PF-G------------FQN----------------------E------------ 806 (953)
Q Consensus 782 ~-~~~a~v~~~~~~d~~~~-------~~-~------------~~~----------------------~------------ 806 (953)
+ .++++++.++++|.... .+ + ++. .
T Consensus 224 el~~~g~~~~~~p~dl~~~~~~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~~lt~~g~~~~~~~~~~~~C~~~~~~~~~ 303 (462)
T 3guu_A 224 ELNIVGASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCLPQVVLTYP 303 (462)
T ss_dssp TSEEEEEEEESCCCBHHHHHHHHTTSTTHHHHHHHHHHHHHHCHHHHHHHHTTBCHHHHHHHHHHTSTTCCHHHHHHHCT
T ss_pred ccceEEEEEecCCCCHHHHHHHhccchhHHHHHHHHHhHHhhCcchhHHHHHHhCHHHHHHHHHHHhcCcchHHHHHhhc
Confidence 3 58888888876652100 00 0 000 0
Q ss_pred ----c-----chhhhh---HHHHHhcCccc-----ccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEE
Q 002209 807 ----D-----RTLWEA---TSTYVEMSPFM-----SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869 (953)
Q Consensus 807 ----~-----~~~~~~---~~~~~~~sp~~-----~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~ 869 (953)
. ..+... .+.+.+...-. -..+++.|+||+||.+|.+|| +.+++++++++++.|.+++++.
T Consensus 304 ~~~~~~~~~~~~~~~~p~~~~~l~~~~lg~~~~~~g~~~~~~PvlI~hG~~D~vVP--~~~s~~l~~~l~~~G~~V~~~~ 381 (462)
T 3guu_A 304 FLNVFSLVNDTNLLNEAPIASILKQETVVQAEASYTVSVPKFPRFIWHAIPDEIVP--YQPAATYVKEQCAKGANINFSP 381 (462)
T ss_dssp TCCGGGGBSCTTGGGSTTHHHHHHHSBCCTTTCSSCCCCCCSEEEEEEETTCSSSC--HHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCHHHHcCCCccccCHHHHHHHHhhcccccccccCCCCCCCCEEEEeCCCCCcCC--HHHHHHHHHHHHHcCCCeEEEE
Confidence 0 000000 01111111100 123567899999999999999 9999999999999999999999
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHHHHhccCC
Q 002209 870 LPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 870 ~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (953)
|++++|.... ...+..+++||++++...
T Consensus 382 y~~~~H~~~~----~~~~~d~l~WL~~r~~G~ 409 (462)
T 3guu_A 382 YPIAEHLTAE----IFGLVPSLWFIKQAFDGT 409 (462)
T ss_dssp ESSCCHHHHH----HHTHHHHHHHHHHHHHTC
T ss_pred ECcCCccCch----hhhHHHHHHHHHHHhCCC
Confidence 9999998642 223678899999998754
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=152.71 Aligned_cols=198 Identities=9% Similarity=-0.035 Sum_probs=130.1
Q ss_pred cEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHHH
Q 002209 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAV 747 (953)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~~ 747 (953)
|+||++||..... ..| ......|+++||.|++ ++.+|+|.+.... ......++|+.+.+
T Consensus 5 ~~vv~lHG~~~~~-----------~~~----~~~~~~l~~~g~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l 66 (258)
T 3dqz_A 5 HHFVLVHNAYHGA-----------WIW----YKLKPLLESAGHRVTA---VELAASGIDPRPIQAVETVDEYSKPLIETL 66 (258)
T ss_dssp CEEEEECCTTCCG-----------GGG----TTHHHHHHHTTCEEEE---ECCTTSTTCSSCGGGCCSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCcc-----------ccH----HHHHHHHHhCCCEEEE---ecCCCCcCCCCCCCccccHHHhHHHHHHHH
Confidence 8899999964211 112 1345678889999999 4556777775421 23555666666655
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcC-------------cccccc------
Q 002209 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG-------------FQNEDR------ 808 (953)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~-------------~~~~~~------ 808 (953)
+.+ . . .+++.|+||||||.+++.++.++|++++++|++++.......... ......
T Consensus 67 ~~l---~-~-~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (258)
T 3dqz_A 67 KSL---P-E-NEEVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRN 141 (258)
T ss_dssp HTS---C-T-TCCEEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCCCCSSSCTTHHHHHHHTSTTCCTTCEEEEEEETT
T ss_pred HHh---c-c-cCceEEEEeChhHHHHHHHHHhChHhhcEEEEecCCCCCCCCcchHHHHHhcccchhhhhcccchhhhhc
Confidence 544 2 1 268999999999999999999999999999999885432111100 000000
Q ss_pred ---------h-----------hhhhHHHH--------------HhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHH
Q 002209 809 ---------T-----------LWEATSTY--------------VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (953)
Q Consensus 809 ---------~-----------~~~~~~~~--------------~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~ 854 (953)
. ..+....+ ............++|+|+++|++|..+| ++.++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~ 219 (258)
T 3dqz_A 142 GTMSLLKMGPKFMKARLYQNCPIEDYELAKMLHRQGSFFTEDLSKKEKFSEEGYGSVQRVYVMSSEDKAIP--CDFIRWM 219 (258)
T ss_dssp EEEEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHHTSCCCCTTTGGGSCEEEEEETTCSSSC--HHHHHHH
T ss_pred cChhhhhhhHHHHHHHhhccCCHHHHHHHHHhccCCchhhhhhhccccccccccccCCEEEEECCCCeeeC--HHHHHHH
Confidence 0 00000000 0011222222236899999999999998 8888888
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 855 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
.+.+.. .+++++|++||... .+..+.+.+.+.+|+++|+
T Consensus 220 ~~~~~~----~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~~~ 258 (258)
T 3dqz_A 220 IDNFNV----SKVYEIDGGDHMVM-LSKPQKLFDSLSAIATDYM 258 (258)
T ss_dssp HHHSCC----SCEEEETTCCSCHH-HHSHHHHHHHHHHHHHHTC
T ss_pred HHhCCc----ccEEEcCCCCCchh-hcChHHHHHHHHHHHHHhC
Confidence 777643 37889999999864 5677888999999999874
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-13 Score=145.60 Aligned_cols=281 Identities=9% Similarity=0.068 Sum_probs=190.1
Q ss_pred eEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCC
Q 002209 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (953)
Q Consensus 194 ~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 273 (953)
-.++.||++|+|.... +...||.++.+|+..++|+... .--++++|++|+|+.......
T Consensus 19 g~~~~~g~~iy~~n~~-------d~~~ly~~~~dg~~~~~l~~~~---------~~~i~~~g~~Iyy~~~~~~~~----- 77 (302)
T 3s25_A 19 GLFCESDGEVFFSNTN-------DNGRLYAMNIDGSNIHKLSNDT---------AMYINADKNYVYYVRNNNQKI----- 77 (302)
T ss_dssp TCEEEETTEEEEEEGG-------GTTEEEEEETTSCSCEEEEEEE---------EEEEEECSSEEEEEEECC--------
T ss_pred eEEEEeCCEEEEEeCC-------CCceEEEEcCCCCCCEEccCCc---------eeeEEEcCCEEEEEECCCCcc-----
Confidence 3567899999997642 2578999999999998886522 123579999999993321100
Q ss_pred CCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCcccccccCCCCcEEEEEEec
Q 002209 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIH 352 (953)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~~~~~~ 352 (953)
+...+-......|+++++ +++.+.|.... ...|+++|++|+|+...
T Consensus 78 ------------------------------~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~---~~~~s~~g~~Iy~~~~~ 124 (302)
T 3s25_A 78 ------------------------------TSQTFFSYDRNSLCRIKRNGHGSTVLDPDP---CIYASLIGNYIYYLHYD 124 (302)
T ss_dssp ---------------------------------CCSSCCSEEEEEEETTSCCCEEEECSC---EEEEEEETTEEEEEEES
T ss_pred ------------------------------cccceeccCCCeEEEEeCCCCcceEeecCC---ccEEEEeCCEEEEEeec
Confidence 000000012457999999 55666776542 22789999999998721
Q ss_pred CCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccC
Q 002209 353 RPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPR 432 (953)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~ 432 (953)
.. ....|+.++++|+..++|+.... ..|+++|+.|+|.. .+.
T Consensus 125 ~~---------~~~~Iy~~~~dGs~~~~lt~~~~-----------------~~~~~~g~~iy~t~------------~g~ 166 (302)
T 3s25_A 125 TQ---------TATSLYRIRIDGEEKKKIKNHYL-----------------FTCNTSDRYFYYNN------------PKN 166 (302)
T ss_dssp SS---------SCEEEEEEETTSCCCEEEESSCC-----------------CCSEEETTEEEEEC------------TTT
T ss_pred CC---------CCceEEEEECCCCCeEEEeCCCc-----------------eEeeEECCEEEEEe------------CCC
Confidence 10 12389999999988888887431 34788999877761 135
Q ss_pred CeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCC
Q 002209 433 DIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGS 512 (953)
Q Consensus 433 ~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (953)
.+|+++++ +|+..++|..... ..+ ++|+|++|+|..+.+. .+|+++++++. ..+++++...
T Consensus 167 ~~Iy~~~l---~g~~~~~l~~~~~--~~~-~~P~g~~iy~t~~~~~--~~I~~~~ldG~--~~~~Lt~~~~--------- 227 (302)
T 3s25_A 167 GQLYRYDT---ASQSEALFYDCNC--YKP-VVLDDTNVYYMDVNRD--NAIVHVNINNP--NPVVLTEANI--------- 227 (302)
T ss_dssp CCEEEEET---TTTEEEEEECSCE--EEE-EEEETTEEEEEEGGGT--TEEEEECSSSC--CCEECSCSCE---------
T ss_pred ceEEEEEC---CCCCEEEEeCCCc--cce-eeecCCEEEEEEcCCC--cEEEEEECCCC--CeEEEeCCCc---------
Confidence 68999996 7777677754322 223 5699999999887654 48999999985 4566654321
Q ss_pred CCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCcccccc
Q 002209 513 PMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLY 592 (953)
Q Consensus 513 p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s 592 (953)
..|+|+|++|+|.... ....|+.+++++...++|...... .++
T Consensus 228 --~~~~~~g~~Iy~~~~~-------------------~~~~i~~~~~DG~~r~~l~~~~~~----------------~i~ 270 (302)
T 3s25_A 228 --EHYNVYGSLIFYQRGG-------------------DNPALCVVKNDGTGFKELAKGEFC----------------NIN 270 (302)
T ss_dssp --EEEEEETTEEEEEECS-------------------SSCEEEEEETTSCCCEEEEESCEE----------------EEE
T ss_pred --ceEEECCCEEEEEECC-------------------CCcEEEEEECCCCccEEeeCCccc----------------eEE
Confidence 4589999999887521 124799999999888888765411 234
Q ss_pred ccCCEEEEEEecCCCCceEEEEECCCCCeeEEe
Q 002209 593 LNQLKILTSKESKTENTQYYIQSWPDKKSCQIT 625 (953)
Q Consensus 593 ~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt 625 (953)
+-+..++|+..... .|+++.+.+...++|.
T Consensus 271 i~~d~Iy~td~~~~---~i~~~~~dGs~~~~l~ 300 (302)
T 3s25_A 271 VTSQYVYFTDFVSN---KEYCTSTQNPDTIKAL 300 (302)
T ss_dssp ECSSEEEEEETTTC---CEEEEESSSCCSCEEC
T ss_pred EeCCEEEEEECCCC---eEEEEECCCCCceEec
Confidence 55778888765433 3888887666666654
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-15 Score=156.78 Aligned_cols=197 Identities=10% Similarity=0.054 Sum_probs=130.7
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh----h--hHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND----R--FVEQLVACA 743 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~----~--~~~~~~~D~ 743 (953)
.|+||++||..... ..|. .....|++ ||.|++ .+.+|+|.+.... . ......+|+
T Consensus 28 ~~~vv~lHG~~~~~-----------~~~~----~~~~~l~~-g~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 88 (282)
T 3qvm_A 28 EKTVLLAHGFGCDQ-----------NMWR----FMLPELEK-QFTVIV---FDYVGSGQSDLESFSTKRYSSLEGYAKDV 88 (282)
T ss_dssp SCEEEEECCTTCCG-----------GGGT----TTHHHHHT-TSEEEE---CCCTTSTTSCGGGCCTTGGGSHHHHHHHH
T ss_pred CCeEEEECCCCCCc-----------chHH----HHHHHHhc-CceEEE---EecCCCCCCCCCCCCccccccHHHHHHHH
Confidence 38899999963211 1121 22445555 999999 5556777775432 1 345566666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccc-c--------------c
Q 002209 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE-D--------------R 808 (953)
Q Consensus 744 ~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~-~--------------~ 808 (953)
.++++.+ +.+++.|+|||+||.+++.++.++|++++++|+++|..........+... . .
T Consensus 89 ~~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (282)
T 3qvm_A 89 EEILVAL------DLVNVSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNY 162 (282)
T ss_dssp HHHHHHT------TCCSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTEECSBCHHHHHHHHHHHHHCH
T ss_pred HHHHHHc------CCCceEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhhhchhccccHHHHHHHHhcch
Confidence 6665554 34689999999999999999999999999999999864321110000000 0 0
Q ss_pred hhh------------------h----------------hHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHH
Q 002209 809 TLW------------------E----------------ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (953)
Q Consensus 809 ~~~------------------~----------------~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~ 854 (953)
..| . ....+...+....+.++++|+|+++|++|..+| ++.+.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~ 240 (282)
T 3qvm_A 163 IGWANYLAPLVMGASHSSELIGELSGSFCTTDPIVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLAS--PEVGQYM 240 (282)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCBCGGGGGGCCSCEEEEEEEECTTCC--HHHHHHH
T ss_pred hhHHHHHHhhccCCccchhhHHHHHHHHhcCCcHHHHHHHHHHhcccHHHHHhcCCCCeEEEEeCCCCcCC--HHHHHHH
Confidence 000 0 000111123335567889999999999999998 8888888
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 855 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
.+.+. ..++++++++||... .+....+.+.+.+||++..
T Consensus 241 ~~~~~----~~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~~~~ 279 (282)
T 3qvm_A 241 AENIP----NSQLELIQAEGHCLH-MTDAGLITPLLIHFIQNNQ 279 (282)
T ss_dssp HHHSS----SEEEEEEEEESSCHH-HHCHHHHHHHHHHHHHHC-
T ss_pred HHhCC----CCcEEEecCCCCccc-ccCHHHHHHHHHHHHHhcC
Confidence 77663 359999999999864 4557788889999998753
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.60 E-value=5e-15 Score=153.66 Aligned_cols=195 Identities=11% Similarity=0.066 Sum_probs=127.4
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhh-hHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR-FVEQLVACAEAAVE 748 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~-~~~~~~~D~~~~~~ 748 (953)
.|+||++||...... .|. ....|+ +||.|+.+|. +|+|.+..... ......+|+.++++
T Consensus 16 ~~~vv~~hG~~~~~~-----------~~~-----~~~~l~-~g~~v~~~d~---~g~g~s~~~~~~~~~~~~~~~~~~~~ 75 (245)
T 3e0x_A 16 PNTLLFVHGSGCNLK-----------IFG-----ELEKYL-EDYNCILLDL---KGHGESKGQCPSTVYGYIDNVANFIT 75 (245)
T ss_dssp SCEEEEECCTTCCGG-----------GGT-----TGGGGC-TTSEEEEECC---TTSTTCCSCCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcccHH-----------HHH-----HHHHHH-hCCEEEEecC---CCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 689999999642211 111 122233 8999999554 57776643322 35666777777764
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHh-CCCcccEEEEcccCCCCCCCCcCccc----------------------
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAH-APHLFCCGIARSGAYNRTLTPFGFQN---------------------- 805 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~~~~d~~~~~~~~~~---------------------- 805 (953)
+...+...+ ++.|+|||+||.+++.++.+ +|+ ++++|+++|.............
T Consensus 76 ~~~~~~~~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (245)
T 3e0x_A 76 NSEVTKHQK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYHNQLDNNYLLECIGGIDNP 152 (245)
T ss_dssp HCTTTTTCS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHTTCCCHHHHHHHHTCSCSH
T ss_pred hhhhHhhcC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHHHHHHhhcCcccccccchH
Confidence 443333334 99999999999999999999 999 9999999987654111000000
Q ss_pred -----------ccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 002209 806 -----------EDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874 (953)
Q Consensus 806 -----------~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 874 (953)
...............+....+.++++|+|+++|++|..+| ++.+.++++.++ .+++++++++|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~g 226 (245)
T 3e0x_A 153 LSEKYFETLEKDPDIMINDLIACKLIDLVDNLKNIDIPVKAIVAKDELLTL--VEYSEIIKKEVE----NSELKIFETGK 226 (245)
T ss_dssp HHHHHHTTSCSSHHHHHHHHHHHHHCBCGGGGGGCCSCEEEEEETTCSSSC--HHHHHHHHHHSS----SEEEEEESSCG
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhccccHHHHHHhCCCCEEEEEeCCCCCCC--HHHHHHHHHHcC----CceEEEeCCCC
Confidence 0000011112223345556678899999999999999998 888888877764 36999999999
Q ss_pred ccCCCcccHHHHHHHHHHHH
Q 002209 875 HGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 875 H~~~~~~~~~~~~~~i~~fl 894 (953)
|... .++...+.+.+.+||
T Consensus 227 H~~~-~~~~~~~~~~i~~fl 245 (245)
T 3e0x_A 227 HFLL-VVNAKGVAEEIKNFI 245 (245)
T ss_dssp GGHH-HHTHHHHHHHHHTTC
T ss_pred cceE-EecHHHHHHHHHhhC
Confidence 9863 344555666665553
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=159.43 Aligned_cols=179 Identities=14% Similarity=0.069 Sum_probs=120.2
Q ss_pred HHHcCcEEEEcCCCCCCCCCChhhh---------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcE-EEEEeChHHH
Q 002209 708 WLARGFAILGGPTTPIIGEGDEEAN---------------DRFVEQLVACAEAAVEEVVRRGVAHPSKI-AVGGHSYGAF 771 (953)
Q Consensus 708 la~~G~~V~~~~~~~~~G~G~~~~~---------------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i-~l~G~S~GG~ 771 (953)
|+++||.|+++|.+|. ++|.+... .......++|+.++++.+ +.+++ .|+||||||.
T Consensus 85 l~~~g~~vi~~D~~G~-~~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~~lvGhS~Gg~ 157 (366)
T 2pl5_A 85 FDTNQYFIICSNVIGG-CKGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESL------GIEKLFCVAGGSMGGM 157 (366)
T ss_dssp EETTTCEEEEECCTTC-SSSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHT------TCSSEEEEEEETHHHH
T ss_pred ccccccEEEEecCCCc-ccCCCCCCCCCCCCCccccCCCCcccHHHHHHHHHHHHHHc------CCceEEEEEEeCccHH
Confidence 4578999999666431 04544221 113456666666666543 34688 7999999999
Q ss_pred HHHHHHHhCCCcccEEEEcccCCCCCCCC----------------cC---c-----------------------------
Q 002209 772 MTANLLAHAPHLFCCGIARSGAYNRTLTP----------------FG---F----------------------------- 803 (953)
Q Consensus 772 ~a~~~a~~~p~~~~a~v~~~~~~d~~~~~----------------~~---~----------------------------- 803 (953)
+++.++.++|++++++|++++........ +. +
T Consensus 158 ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (366)
T 2pl5_A 158 QALEWSIAYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREK 237 (366)
T ss_dssp HHHHHHHHSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHH
T ss_pred HHHHHHHhCcHhhhheeEeccCccCCCccchhhHHHHHHHHhCcccccccccccccccchHHHHHhhccccCCHHHHHHH
Confidence 99999999999999999998865421000 00 0
Q ss_pred -----cc-------cc-ch--------------h---hhhHHHHHhcCc------ccccCCCCCcEEEEEeCCCCCCCCc
Q 002209 804 -----QN-------ED-RT--------------L---WEATSTYVEMSP------FMSANKLKKPILLVHGEEDNNSGTL 847 (953)
Q Consensus 804 -----~~-------~~-~~--------------~---~~~~~~~~~~sp------~~~~~~i~~P~Li~~G~~D~~v~~~ 847 (953)
.. .. .. . ......+...+. ...+.++++|+|+++|++|..+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-- 315 (366)
T 2pl5_A 238 FGRNPPRGNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYP-- 315 (366)
T ss_dssp HTTSCCSSCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSC--
T ss_pred hhhhhhcccccchhhhHHHHHHHHHHhhhcccChhHHHHHHhhhhhhccccccchhhhhccCCCCEEEEecCCCcccC--
Confidence 00 00 00 0 000011111111 12567889999999999999998
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEe-CCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 848 TMQSDRFFNALKGHGALCRLVIL-PFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 848 ~~~~~~~~~~l~~~g~~~~~~~~-~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
++.+.++++.+...+..++++++ +++||... .+....+.+.+.+||++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~ 364 (366)
T 2pl5_A 316 PAQSREIVKSLEAADKRVFYVELQSGEGHDSF-LLKNPKQIEILKGFLEN 364 (366)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCCBSSGGG-GSCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhcccCeEEEEeCCCCCcchh-hcChhHHHHHHHHHHcc
Confidence 99999999999877666899999 89999874 34556788888899875
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.5e-15 Score=158.66 Aligned_cols=216 Identities=14% Similarity=0.055 Sum_probs=134.0
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
+...+.. +|..+..+.+-|+ ..|+||++||+.... ..|. .....|++ ||.|+++|
T Consensus 46 ~~~~v~~-~~~~~~~~~~g~~--------~~~~vv~lHG~~~~~-----------~~~~----~~~~~L~~-g~~vi~~D 100 (306)
T 2r11_A 46 KSFYIST-RFGQTHVIASGPE--------DAPPLVLLHGALFSS-----------TMWY----PNIADWSS-KYRTYAVD 100 (306)
T ss_dssp EEEEECC-TTEEEEEEEESCT--------TSCEEEEECCTTTCG-----------GGGT----TTHHHHHH-HSEEEEEC
T ss_pred ceEEEec-CCceEEEEeeCCC--------CCCeEEEECCCCCCH-----------HHHH----HHHHHHhc-CCEEEEec
Confidence 4444443 5557766664332 257899999964211 1121 22445665 99999955
Q ss_pred CCCCCCC-CChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC
Q 002209 720 TTPIIGE-GDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (953)
Q Consensus 720 ~~~~~G~-G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~ 796 (953)
. +|+ |.+... .........|+.++++.+ +.+++.|+|||+||.+++.++.++|++++++|+++|....
T Consensus 101 ~---~G~gG~s~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 171 (306)
T 2r11_A 101 I---IGDKNKSIPENVSGTRTDYANWLLDVFDNL------GIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETF 171 (306)
T ss_dssp C---TTSSSSCEECSCCCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBT
T ss_pred C---CCCCCCCCCCCCCCCHHHHHHHHHHHHHhc------CCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCcccc
Confidence 5 566 555332 223455666666665553 2368999999999999999999999999999999987653
Q ss_pred CCCCcCc-----ccc-----------------cc-hhhhhHHHH-Hh-----------------cCcccccCCCCCcEEE
Q 002209 797 TLTPFGF-----QNE-----------------DR-TLWEATSTY-VE-----------------MSPFMSANKLKKPILL 835 (953)
Q Consensus 797 ~~~~~~~-----~~~-----------------~~-~~~~~~~~~-~~-----------------~sp~~~~~~i~~P~Li 835 (953)
....... ... .. ......... .. ......+.++++|+|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~li 251 (306)
T 2r11_A 172 LPFHHDFYKYALGLTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVPILL 251 (306)
T ss_dssp SCCCHHHHHHHHTTTSTTHHHHHHHHHTTTCCCSCHHHHHHHHHHHHCCSSSCCCCCCTTSSSCBCCHHHHHTCCSCEEE
T ss_pred CcccHHHHHHHhHHHHHHHHHHHHHHhhCCccccccccccccHHHHHHHHhhhhhhhhccCCCCCCCHHHHhcCCCCEEE
Confidence 2111000 000 00 000000000 00 0111234567899999
Q ss_pred EEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 836 ~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
++|++|..+| +..+.++++.+. ..+++++++++||... .+....+.+.+.+||+
T Consensus 252 i~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 305 (306)
T 2r11_A 252 LLGEHEVIYD--PHSALHRASSFV---PDIEAEVIKNAGHVLS-MEQPTYVNERVMRFFN 305 (306)
T ss_dssp EEETTCCSSC--HHHHHHHHHHHS---TTCEEEEETTCCTTHH-HHSHHHHHHHHHHHHC
T ss_pred EEeCCCcccC--HHHHHHHHHHHC---CCCEEEEeCCCCCCCc-ccCHHHHHHHHHHHHh
Confidence 9999999998 887776665442 2368999999999763 4556777788888874
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.8e-13 Score=144.92 Aligned_cols=275 Identities=11% Similarity=0.025 Sum_probs=167.7
Q ss_pred cceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhh
Q 002209 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (953)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (953)
...|+++|+.+++.......+... .....++|+|||+.++++..
T Consensus 10 ~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~---------------------------------- 53 (337)
T 1pby_B 10 PDKLVVIDTEKMAVDKVITIADAG--PTPMVPMVAPGGRIAYATVN---------------------------------- 53 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCT--TCCCCEEECTTSSEEEEEET----------------------------------
T ss_pred CCeEEEEECCCCcEEEEEEcCCCC--CCccceEEcCCCCEEEEEeC----------------------------------
Confidence 568999999988765544333210 00457899999998887610
Q ss_pred hcCCcchhhhhhhhccceEEEEEc-CCcee-EeCCCC------cccccccCCCCcEEEEEEecCCccccccCCC--CCcc
Q 002209 298 LLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPPA------VYTSLDPSPDEKYILISSIHRPYSFIVPCGR--FPRQ 367 (953)
Q Consensus 298 ~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~~~~------~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~--~~~~ 367 (953)
....|+++|+ +++.. .+.... .+..++|||||++|++....... .+... ....
T Consensus 54 --------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~---~~~~~~~~~~~ 116 (337)
T 1pby_B 54 --------------KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRL---ELTHFEVQPTR 116 (337)
T ss_dssp --------------TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEE---CSSCEEECCCE
T ss_pred --------------CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccc---ccccccccCce
Confidence 2246889998 77644 343222 56789999999999888522100 00000 1348
Q ss_pred eEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC
Q 002209 368 VGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG 447 (953)
Q Consensus 368 i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~ 447 (953)
|++||+++++........ ..+..++|+|||+.+++. .+.++++|+ .+++
T Consensus 117 i~v~d~~~~~~~~~~~~~-------------~~~~~~~~s~dg~~l~~~---------------~~~i~~~d~---~~~~ 165 (337)
T 1pby_B 117 VALYDAETLSRRKAFEAP-------------RQITMLAWARDGSKLYGL---------------GRDLHVMDP---EAGT 165 (337)
T ss_dssp EEEEETTTTEEEEEEECC-------------SSCCCEEECTTSSCEEEE---------------SSSEEEEET---TTTE
T ss_pred EEEEECCCCcEEEEEeCC-------------CCcceeEECCCCCEEEEe---------------CCeEEEEEC---CCCc
Confidence 999999876544322211 123578899999987665 246889996 4444
Q ss_pred ceEEeecccccCCeeeccCCceEEEEEecccC--------------------ceEEEEEcCCCCCCCcEEeec-CCCccc
Q 002209 448 PEILHKLDLRYGGISWCDDSLALVYESWYKTR--------------------RTRTWVISPGSKDVAPRILFD-RSSEDV 506 (953)
Q Consensus 448 ~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~--------------------~~~l~~~d~~~~~~~~~~~~~-~~~~~~ 506 (953)
.............+.|+|||+.|++....... ...|+++|+.++. ...+.. ......
T Consensus 166 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~ 243 (337)
T 1pby_B 166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMREVRIMDVFY 243 (337)
T ss_dssp EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--EEEEEEEECSSCE
T ss_pred EeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC--ceEeecCCCCCce
Confidence 33222222212456899999987665422211 0157889988752 222211 111111
Q ss_pred cCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCC
Q 002209 507 YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQ 586 (953)
Q Consensus 507 ~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 586 (953)
.+ +.|+|||++++... ..|++||+++++.......... -
T Consensus 244 ~~------~~~s~dg~~l~~~~-----------------------~~v~~~d~~~~~~~~~~~~~~~------------~ 282 (337)
T 1pby_B 244 FS------TAVNPAKTRAFGAY-----------------------NVLESFDLEKNASIKRVPLPHS------------Y 282 (337)
T ss_dssp EE------EEECTTSSEEEEEE-----------------------SEEEEEETTTTEEEEEEECSSC------------C
T ss_pred ee------EEECCCCCEEEEeC-----------------------CeEEEEECCCCcCcceecCCCc------------e
Confidence 11 78999999987661 1499999998876655443221 1
Q ss_pred ccccccccCCEEEEEEecCCCCceEEEEECCCCCeeE
Q 002209 587 TEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (953)
Q Consensus 587 ~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~ 623 (953)
....|++||+.+++. .. ...++++++.+++...
T Consensus 283 ~~~~~s~dg~~l~~~-~~---~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 283 YSVNVSTDGSTVWLG-GA---LGDLAAYDAETLEKKG 315 (337)
T ss_dssp CEEEECTTSCEEEEE-SB---SSEEEEEETTTCCEEE
T ss_pred eeEEECCCCCEEEEE-cC---CCcEEEEECcCCcEEE
Confidence 124689999977764 22 3679999998887554
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-13 Score=148.01 Aligned_cols=230 Identities=13% Similarity=0.134 Sum_probs=142.2
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCcee--e-cccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR--P-LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~--~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
.+...+|||||+.||.... +..|.++++++++.. . +..... ..+..++|+|||+.|+...
T Consensus 18 ~v~~l~~sp~g~~las~~~---------D~~i~iw~~~~~~~~~~~~~~~~h~----~~v~~~~~sp~g~~l~s~s---- 80 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGG---------DRRIRIWGTEGDSWICKSVLSEGHQ----RTVRKVAWSPCGNYLASAS---- 80 (345)
T ss_dssp CEEEEEECTTSSCEEEEET---------TSCEEEEEEETTEEEEEEEECSSCS----SCEEEEEECTTSSEEEEEE----
T ss_pred cEEEEEECCCCCEEEEEcC---------CCeEEEEEcCCCcceeeeeeccccC----CcEEEEEECCCCCEEEEEE----
Confidence 5778999999999998652 445666676666432 1 212122 2277899999999998762
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc---eeEeCCC-CcccccccCC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLDPSP 341 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~---~~~l~~~-~~~~~~~~Sp 341 (953)
..+.+.++++ .+. ...+... ..+..++|+|
T Consensus 81 ---------------------------------------------~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp 115 (345)
T 3fm0_A 81 ---------------------------------------------FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP 115 (345)
T ss_dssp ---------------------------------------------TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT
T ss_pred ---------------------------------------------CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC
Confidence 1123334444 332 3344444 7788999999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
||++|+..+.+. .|.+||++.+. ...+.... +....+..++|+|||+.|+..
T Consensus 116 ~~~~l~s~s~D~-------------~v~iwd~~~~~~~~~~~~~~----------~h~~~v~~~~~~p~~~~l~s~---- 168 (345)
T 3fm0_A 116 SGNLLATCSRDK-------------SVWVWEVDEEDEYECVSVLN----------SHTQDVKHVVWHPSQELLASA---- 168 (345)
T ss_dssp TSSEEEEEETTS-------------CEEEEEECTTSCEEEEEEEC----------CCCSCEEEEEECSSSSCEEEE----
T ss_pred CCCEEEEEECCC-------------eEEEEECCCCCCeEEEEEec----------CcCCCeEEEEECCCCCEEEEE----
Confidence 999999887443 89999997542 22222111 111345679999999977665
Q ss_pred cCCCcccccccCCeEEEEecCCCCCCCc---eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCc--
Q 002209 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP-- 495 (953)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~d~~~~~g~~~---~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~-- 495 (953)
+..+.+.+|+. ..++. ..+..+...+..++|+|||+.|+..+.++. .+||.....+.....
T Consensus 169 ---------s~d~~i~~w~~---~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~--v~iW~~~~~~~~~~~~~ 234 (345)
T 3fm0_A 169 ---------SYDDTVKLYRE---EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT--VRIWRQYLPGNEQGVAC 234 (345)
T ss_dssp ---------ETTSCEEEEEE---ETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEEEECTTCTTCCCC
T ss_pred ---------eCCCcEEEEEe---cCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe--EEEeccccCCCCcccee
Confidence 34556778875 33322 234455667788999999999988776553 478876443321100
Q ss_pred -------E---EeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 496 -------R---ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 496 -------~---~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
. .+.......++. ++|+|++..|+...
T Consensus 235 ~~~~~~~~~~~~~~~~h~~~v~~------v~~~~~~~~l~s~~ 271 (345)
T 3fm0_A 235 SGSDPSWKCICTLSGFHSRTIYD------IAWCQLTGALATAC 271 (345)
T ss_dssp C---CEEEEEEEECSSCSSCEEE------EEECTTTCCEEEEE
T ss_pred eccCCccceeEEecCCCCCcEEE------EEEecCCCEEEEEe
Confidence 0 011112222333 78999999888766
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-15 Score=154.01 Aligned_cols=196 Identities=15% Similarity=0.131 Sum_probs=128.8
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh----hh--hHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN----DR--FVEQLVACA 743 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~----~~--~~~~~~~D~ 743 (953)
.|+||++||..... ..|. .....|++ ||.|+++| .+|+|.+... .. .....++|+
T Consensus 20 ~p~vv~~HG~~~~~-----------~~~~----~~~~~l~~-g~~v~~~D---~~G~G~S~~~~~~~~~~~~~~~~~~~~ 80 (269)
T 4dnp_A 20 ERVLVLAHGFGTDQ-----------SAWN----RILPFFLR-DYRVVLYD---LVCAGSVNPDFFDFRRYTTLDPYVDDL 80 (269)
T ss_dssp SSEEEEECCTTCCG-----------GGGT----TTGGGGTT-TCEEEEEC---CTTSTTSCGGGCCTTTCSSSHHHHHHH
T ss_pred CCEEEEEeCCCCcH-----------HHHH----HHHHHHhC-CcEEEEEc---CCCCCCCCCCCCCccccCcHHHHHHHH
Confidence 58999999964221 1121 12234555 99999954 4677777431 11 245666676
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC-c--Cccccc-----------ch
Q 002209 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-F--GFQNED-----------RT 809 (953)
Q Consensus 744 ~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~-~--~~~~~~-----------~~ 809 (953)
.++++.+ +.+++.|+||||||.+++.++.++|++++++|++++........ + .+.... ..
T Consensus 81 ~~~~~~~------~~~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (269)
T 4dnp_A 81 LHILDAL------GIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYE 154 (269)
T ss_dssp HHHHHHT------TCCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTBCCSBCHHHHHHHHHHHHHCHH
T ss_pred HHHHHhc------CCCeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHhccccchHHHHHHHHhccccHH
Confidence 6666554 34589999999999999999999999999999999864321110 0 000000 00
Q ss_pred hh-----------------h----------------hHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHH
Q 002209 810 LW-----------------E----------------ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (953)
Q Consensus 810 ~~-----------------~----------------~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~ 856 (953)
.| . ....+...+....+.++++|+|+++|++|..+| +..+.++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~ 232 (269)
T 4dnp_A 155 AWVNGFAPLAVGADVPAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVP--ASVATYLKN 232 (269)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGGCCSCEEEEEEESBTTBC--HHHHHHHHH
T ss_pred HHHHHhhhhhccCCChhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhccccCCEEEEecCCCcccC--HHHHHHHHH
Confidence 00 0 001111223445677889999999999999998 888888877
Q ss_pred HHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 857 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
.+... +++++++++||... .+..+.+.+.+.+||++
T Consensus 233 ~~~~~---~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~ 268 (269)
T 4dnp_A 233 HLGGK---NTVHWLNIEGHLPH-LSAPTLLAQELRRALSH 268 (269)
T ss_dssp HSSSC---EEEEEEEEESSCHH-HHCHHHHHHHHHHHHC-
T ss_pred hCCCC---ceEEEeCCCCCCcc-ccCHHHHHHHHHHHHhh
Confidence 76442 79999999999863 45667778888888765
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-13 Score=149.33 Aligned_cols=205 Identities=12% Similarity=0.076 Sum_probs=126.3
Q ss_pred cccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002209 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (953)
Q Consensus 333 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~ 412 (953)
.+..++|||||++|++.+.. ..+.|.+||+.++.......+. ..+.+++|||||+.
T Consensus 135 ~~~~v~fSpDg~~la~as~~-----------~d~~i~iwd~~~~~~~~~~~~~-------------~~V~~v~fspdg~~ 190 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSK-----------VPAIMRIIDPSDLTEKFEIETR-------------GEVKDLHFSTDGKV 190 (365)
T ss_dssp CEEEEEECTTSSCEEEEESC-----------SSCEEEEEETTTTEEEEEEECS-------------SCCCEEEECTTSSE
T ss_pred CEEEEEEcCCCCEEEEEECC-----------CCCEEEEeECCCCcEEEEeCCC-------------CceEEEEEccCCce
Confidence 45678999999999887632 2348999999866544332221 23568999999997
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE--eecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
++.. + .+.+.+++. .++...... ..+...+..++|+|||+.++..+..+.....++.++...
T Consensus 191 l~s~-------------s-~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~ 254 (365)
T 4h5i_A 191 VAYI-------------T-GSSLEVIST--VTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS 254 (365)
T ss_dssp EEEE-------------C-SSCEEEEET--TTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET
T ss_pred EEec-------------c-ceeEEEEEe--ccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc
Confidence 7765 2 334556663 233322222 223455678999999999998876655444566666554
Q ss_pred CCCCcE--EeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEE-
Q 002209 491 KDVAPR--ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI- 567 (953)
Q Consensus 491 ~~~~~~--~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l- 567 (953)
...... .........+.. +.|||||++|+....+. .+++||+.+++...-
T Consensus 255 ~~~~~~~~~~~~~~~~~V~~------~~~Spdg~~lasgs~D~---------------------~V~iwd~~~~~~~~~~ 307 (365)
T 4h5i_A 255 GNTSVLRSKQVTNRFKGITS------MDVDMKGELAVLASNDN---------------------SIALVKLKDLSMSKIF 307 (365)
T ss_dssp TEEEEEEEEEEESSCSCEEE------EEECTTSCEEEEEETTS---------------------CEEEEETTTTEEEEEE
T ss_pred ceecceeeeeecCCCCCeEe------EEECCCCCceEEEcCCC---------------------EEEEEECCCCcEEEEe
Confidence 311111 112222222333 78999999999876422 399999998876543
Q ss_pred eccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002209 568 WESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (953)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g 619 (953)
..+... .+.. .+|||||+.|+- .+.. ..|.+++++..
T Consensus 308 ~~gH~~----~V~~-------v~fSpdg~~laS-~S~D---~tvrvw~ip~~ 344 (365)
T 4h5i_A 308 KQAHSF----AITE-------VTISPDSTYVAS-VSAA---NTIHIIKLPLN 344 (365)
T ss_dssp TTSSSS----CEEE-------EEECTTSCEEEE-EETT---SEEEEEECCTT
T ss_pred cCcccC----CEEE-------EEECCCCCEEEE-EeCC---CeEEEEEcCCC
Confidence 232211 1222 479999997663 3332 35788887543
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7.7e-15 Score=157.17 Aligned_cols=197 Identities=16% Similarity=0.154 Sum_probs=131.8
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhh-hHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR-FVEQLVACAEAAVE 748 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~-~~~~~~~D~~~~~~ 748 (953)
.|+||++||.+... ..| .......|+++||.|+++|. +|+|.+..... ......+|+.++++
T Consensus 43 ~~~vv~lHG~~~~~-----------~~~---~~~~~~~l~~~g~~vi~~D~---~G~G~s~~~~~~~~~~~~~~~~~~l~ 105 (293)
T 3hss_A 43 GDPVVFIAGRGGAG-----------RTW---HPHQVPAFLAAGYRCITFDN---RGIGATENAEGFTTQTMVADTAALIE 105 (293)
T ss_dssp SEEEEEECCTTCCG-----------GGG---TTTTHHHHHHTTEEEEEECC---TTSGGGTTCCSCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCch-----------hhc---chhhhhhHhhcCCeEEEEcc---CCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 57899999964221 111 11235577899999999555 56676654332 35667777777777
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCc--------------Ccccc--------
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF--------------GFQNE-------- 806 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~--------------~~~~~-------- 806 (953)
.+ +.+++.|+|||+||.+++.++.++|++++++|++++......... .....
T Consensus 106 ~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (293)
T 3hss_A 106 TL------DIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLL 179 (293)
T ss_dssp HH------TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred hc------CCCcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhhcccchhhHHHHHHHh
Confidence 76 235899999999999999999999999999999998654211000 00000
Q ss_pred ---cchhhhh-------HHHHH------------------hcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHH
Q 002209 807 ---DRTLWEA-------TSTYV------------------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNAL 858 (953)
Q Consensus 807 ---~~~~~~~-------~~~~~------------------~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l 858 (953)
....... ...+. ..+....+.++++|+|+++|++|..+| ++.+.++.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~--~~~~~~~~~~~ 257 (293)
T 3hss_A 180 ENFSRKTLNDDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIAAPVLVIGFADDVVTP--PYLGREVADAL 257 (293)
T ss_dssp HHSCHHHHTCHHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHTTCCSCEEEEEETTCSSSC--HHHHHHHHHHS
T ss_pred hhcccccccccccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHhhCCCCEEEEEeCCCCCCC--HHHHHHHHHHC
Confidence 0000000 00000 011223457789999999999999998 88888887776
Q ss_pred HhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 859 KGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 859 ~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
. .+++++++++||... .++.+.+.+.+.+||++
T Consensus 258 ~----~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~ 290 (293)
T 3hss_A 258 P----NGRYLQIPDAGHLGF-FERPEAVNTAMLKFFAS 290 (293)
T ss_dssp T----TEEEEEETTCCTTHH-HHSHHHHHHHHHHHHHT
T ss_pred C----CceEEEeCCCcchHh-hhCHHHHHHHHHHHHHh
Confidence 3 368999999999863 45667788888888875
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-15 Score=156.67 Aligned_cols=206 Identities=15% Similarity=0.104 Sum_probs=130.0
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|.++..... + ..|+||++||..... ..|.. ....|++ ||.|+++ +.+|+
T Consensus 10 ~~~~~~~y~~~---g-------~~~~vv~~HG~~~~~-----------~~~~~----~~~~L~~-~~~vi~~---d~~G~ 60 (278)
T 3oos_A 10 TPRGKFEYFLK---G-------EGPPLCVTHLYSEYN-----------DNGNT----FANPFTD-HYSVYLV---NLKGC 60 (278)
T ss_dssp ETTEEEEEEEE---C-------SSSEEEECCSSEECC-----------TTCCT----TTGGGGG-TSEEEEE---CCTTS
T ss_pred cCCceEEEEec---C-------CCCeEEEEcCCCcch-----------HHHHH----HHHHhhc-CceEEEE---cCCCC
Confidence 36667765443 1 146899999964221 11221 1234445 9999994 45677
Q ss_pred CChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC--
Q 002209 727 GDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-- 800 (953)
Q Consensus 727 G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~-- 800 (953)
|.+.... .......+|+.+.++.+ +.+++.++|||+||.+++.++.++|++++++|++++........
T Consensus 61 G~s~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~ 134 (278)
T 3oos_A 61 GNSDSAKNDSEYSMTETIKDLEAIREAL------YINKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHK 134 (278)
T ss_dssp TTSCCCSSGGGGSHHHHHHHHHHHHHHT------TCSCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBGGGGGST
T ss_pred CCCCCCCCcccCcHHHHHHHHHHHHHHh------CCCeEEEEeecccHHHHHHHHHhCchhhCeEEEecCcccccccccc
Confidence 7775432 22455566666655543 34589999999999999999999999999999999875511000
Q ss_pred ---cCccccc---------------------chh---h-------------------------hhHHHHH-----hcCcc
Q 002209 801 ---FGFQNED---------------------RTL---W-------------------------EATSTYV-----EMSPF 823 (953)
Q Consensus 801 ---~~~~~~~---------------------~~~---~-------------------------~~~~~~~-----~~sp~ 823 (953)
....... ... | .....+. ..+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (278)
T 3oos_A 135 DSIYCSKNVKFNRIVSIMNALNDDSTVQEERKALSREWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVR 214 (278)
T ss_dssp TSTTSTTSTTHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHCSCHHHHHHHTTSCCCCEECHHHHHHHHHTTGGGCBCH
T ss_pred chhhhhhchhHHHHHHHHHhhcccccCchHHHHHHHHHhhcccCCcHHHHHHhhccccchhHHHHHHHhhhcccccccHH
Confidence 0000000 000 0 0000111 12233
Q ss_pred cccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 824 ~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
..+.++++|+|+++|++|..+| ++.+.++.+.+. .+++++++++||... .++.+.+.+.+.+||
T Consensus 215 ~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl 278 (278)
T 3oos_A 215 QKLKFVKIPSFIYCGKHDVQCP--YIFSCEIANLIP----NATLTKFEESNHNPF-VEEIDKFNQFVNDTL 278 (278)
T ss_dssp HHHTTCCSCEEEEEETTCSSSC--HHHHHHHHHHST----TEEEEEETTCSSCHH-HHSHHHHHHHHHHTC
T ss_pred HHHhCCCCCEEEEEeccCCCCC--HHHHHHHHhhCC----CcEEEEcCCcCCCcc-cccHHHHHHHHHhhC
Confidence 4567789999999999999998 888888887763 369999999999863 445666666666653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-13 Score=154.11 Aligned_cols=279 Identities=11% Similarity=0.059 Sum_probs=170.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++|+..+.+ +.|.|||+.+ + .....+... ..
T Consensus 68 ~V~~~~~sp~~~~l~s~s~D---------------------------------~~v~iWd~~~-~--~~~~~~~~h--~~ 109 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSASQD---------------------------------GRLIVWNALT-S--QKTHAIKLH--CP 109 (380)
T ss_dssp CEEEEEECTTSSCEEEEETT---------------------------------SEEEEEETTT-T--EEEEEEECC--CT
T ss_pred EEEEEEEcCCCCEEEEEeCC---------------------------------CeEEEEECCC-C--ccceEEecC--CC
Confidence 57788999999999998876 3689999853 2 223334332 24
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce--------eecccCCCccccccccceEEecCCe-EEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--------RPLFQSPDIYLNAIFDNFVWVNNST-LLVC 260 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~--------~~lt~~~~~~~~~~~~~~~wspDg~-~l~~ 260 (953)
.+...+|+|||+.|+... ....+.++++.+... +.+..+. ..+..+.|+|++. .|+.
T Consensus 110 ~v~~~~~s~~g~~las~~---------~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~-----~~v~~~~~~~~~~~~l~s 175 (380)
T 3iz6_a 110 WVMECAFAPNGQSVACGG---------LDSACSIFNLSSQADRDGNMPVSRVLTGHK-----GYASSCQYVPDQETRLIT 175 (380)
T ss_dssp TCCCCEECTTSSEEEECC---------SSSCCEEEECCCCSSCCCSSTTCCBCCCCS-----SCCCCCBCCSSSSSCEEE
T ss_pred CEEEEEECCCCCEEEEee---------CCCcEEEEECCCCccccCCccceeeccCCC-----cceEEEEEecCCCCEEEE
Confidence 688899999999998733 244555556544221 1122222 2266788998754 4554
Q ss_pred EecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeC------CC-C
Q 002209 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG------PP-A 332 (953)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~------~~-~ 332 (953)
.. ..+.|.++|+ +|+..... .. .
T Consensus 176 ~s-------------------------------------------------~D~~i~~wd~~~~~~~~~~~~~~~~~h~~ 206 (380)
T 3iz6_a 176 GS-------------------------------------------------GDQTCVLWDVTTGQRISIFGSEFPSGHTA 206 (380)
T ss_dssp EC-------------------------------------------------TTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred EC-------------------------------------------------CCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence 41 2245667777 66443221 12 4
Q ss_pred cccccccCC-CCcEEEEEEecCCccccccCCCCCcceEEEecc-Cc-eEEEeccCCCcccCCccccccccCccceeeccC
Q 002209 333 VYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 333 ~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
.+..+.|+| |++.|+..+.+. .|.+||+. ++ ..+.+..+ ...+..++|+||
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~-------------~v~~wd~~~~~~~~~~~~~h-------------~~~v~~v~~~p~ 260 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDT-------------TVRLWDLRITSRAVRTYHGH-------------EGDINSVKFFPD 260 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTS-------------CEEEEETTTTCCCCEEECCC-------------SSCCCEEEECTT
T ss_pred CeEEEEeecCCCCEEEEEECCC-------------eEEEEECCCCCcceEEECCc-------------CCCeEEEEEecC
Confidence 566778876 888888776443 89999996 32 23333322 234578999999
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE-Eeecc-------cccCCeeeccCCceEEEEEecccCce
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-LHKLD-------LRYGGISWCDDSLALVYESWYKTRRT 481 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~-l~~~~-------~~~~~~~~SpDg~~l~~~~~~~~~~~ 481 (953)
|+.++-. +..+.+.+||+ ..+.... +.... ..+..++|||+|+.|+....++
T Consensus 261 ~~~l~s~-------------s~D~~i~lwd~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---- 320 (380)
T 3iz6_a 261 GQRFGTG-------------SDDGTCRLFDM---RTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG---- 320 (380)
T ss_dssp SSEEEEE-------------CSSSCEEEEET---TTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS----
T ss_pred CCeEEEE-------------cCCCeEEEEEC---CCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC----
Confidence 9876655 45668899996 3333222 22211 1256789999999988765433
Q ss_pred EEEEEcCCCCCCCcEEee---cCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEE
Q 002209 482 RTWVISPGSKDVAPRILF---DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFD 558 (953)
Q Consensus 482 ~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d 558 (953)
.++++|...+. ....+. ......+.. +.|||||++|+....+. .|.+|+
T Consensus 321 ~i~vwd~~~~~-~~~~~~~~~~~h~~~v~~------l~~s~dg~~l~sgs~D~---------------------~i~iW~ 372 (380)
T 3iz6_a 321 DCYVWDTLLAE-MVLNLGTLQNSHEGRISC------LGLSSDGSALCTGSWDK---------------------NLKIWA 372 (380)
T ss_dssp CEEEEETTTCC-EEEEECCSCSSCCCCCCE------EEECSSSSEEEEECTTS---------------------CEEEEE
T ss_pred CEEEEECCCCc-eEEEEecccCCCCCceEE------EEECCCCCEEEEeeCCC---------------------CEEEEe
Confidence 46666665541 111111 122222222 78999999998776322 388999
Q ss_pred CCCCc
Q 002209 559 INTGS 563 (953)
Q Consensus 559 ~~~~~ 563 (953)
+.+++
T Consensus 373 ~~~~~ 377 (380)
T 3iz6_a 373 FSGHR 377 (380)
T ss_dssp CCSSS
T ss_pred cCCCc
Confidence 87653
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-13 Score=156.90 Aligned_cols=126 Identities=8% Similarity=0.045 Sum_probs=76.5
Q ss_pred CcccccccCCCC-cEEEEEEecCCccccccCCCCCcceEEEeccCceE-----EEeccCCCcccCCccccccccCcccee
Q 002209 332 AVYTSLDPSPDE-KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-----RELCDLPLAEDIPIAFNSVRKGMRSIN 405 (953)
Q Consensus 332 ~~~~~~~~SpDG-~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-----~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (953)
..+..++|+||| +.|+..+.+ +.|.+||+..+.. +.+......... ..+......+..++
T Consensus 227 ~~v~~~~~~p~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~ 292 (447)
T 3dw8_B 227 EVITAAEFHPNSCNTFVYSSSK-------------GTIRLCDMRASALCDRHSKLFEEPEDPSNR-SFFSEIISSISDVK 292 (447)
T ss_dssp CCEEEEEECSSCTTEEEEEETT-------------SCEEEEETTTCSSSCTTCEEECCC-----C-CHHHHHTTCEEEEE
T ss_pred cceEEEEECCCCCcEEEEEeCC-------------CeEEEEECcCCccccceeeEeccCCCcccc-ccccccCceEEEEE
Confidence 668899999999 888777744 3899999986542 333332110000 00111112457899
Q ss_pred eccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCC-CCCceEEeecccc---------------cCCeeeccCCce
Q 002209 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ-GEGPEILHKLDLR---------------YGGISWCDDSLA 469 (953)
Q Consensus 406 wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-g~~~~~l~~~~~~---------------~~~~~~SpDg~~ 469 (953)
|+|||+.++.. +. +.|.+||+ .. +.....+..+... ...+.|+|||++
T Consensus 293 ~s~~g~~l~~~-------------~~-~~v~iwd~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~ 356 (447)
T 3dw8_B 293 FSHSGRYMMTR-------------DY-LSVKVWDL--NMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV 356 (447)
T ss_dssp ECTTSSEEEEE-------------ES-SEEEEEET--TCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE
T ss_pred ECCCCCEEEEe-------------eC-CeEEEEeC--CCCccccceeeccccccccccccccccccccceEEEECCCCCE
Confidence 99999977655 34 68999996 22 3333334333221 123899999999
Q ss_pred EEEEEecccCceEEEEEcCCCC
Q 002209 470 LVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
|+..+.++ .|+++|+.++
T Consensus 357 l~s~s~dg----~v~iwd~~~~ 374 (447)
T 3dw8_B 357 VMTGSYNN----FFRMFDRNTK 374 (447)
T ss_dssp EEEECSTT----EEEEEETTTC
T ss_pred EEEeccCC----EEEEEEcCCC
Confidence 97665443 5666777664
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=152.91 Aligned_cols=199 Identities=11% Similarity=0.004 Sum_probs=129.7
Q ss_pred CccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHH
Q 002209 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEA 745 (953)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~ 745 (953)
..|+||++||.+... ..| ......|+++||.|+++ +.+|+|.+.... ......++|+.+
T Consensus 11 ~~~~vvllHG~~~~~-----------~~~----~~~~~~l~~~g~~v~~~---D~~G~G~S~~~~~~~~~~~~~~~~~~~ 72 (267)
T 3sty_A 11 VKKHFVLVHAAFHGA-----------WCW----YKIVALMRSSGHNVTAL---DLGASGINPKQALQIPNFSDYLSPLME 72 (267)
T ss_dssp CCCEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEEE---CCTTSTTCSCCGGGCCSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCc-----------chH----HHHHHHHHhcCCeEEEe---ccccCCCCCCcCCccCCHHHHHHHHHH
Confidence 368999999964211 111 23456678889999994 556788775432 235566666666
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC--------------c---Ccc--cc
Q 002209 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP--------------F---GFQ--NE 806 (953)
Q Consensus 746 ~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~--------------~---~~~--~~ 806 (953)
.++.+ . +.+++.|+||||||.+++.++.++|++++++|++++........ + .+. ..
T Consensus 73 ~l~~l---~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (267)
T 3sty_A 73 FMASL---P--ANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENG 147 (267)
T ss_dssp HHHTS---C--TTSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCCCBTTBCHHHHHHHHHHTTTTCTTCEEECTTC
T ss_pred HHHhc---C--CCCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCCCCCcchHHHHHHHhcccchhhhhhhhhhhhh
Confidence 65544 1 34689999999999999999999999999999988754211100 0 000 00
Q ss_pred ----cchh----------------hhhH---------------HHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHH
Q 002209 807 ----DRTL----------------WEAT---------------STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS 851 (953)
Q Consensus 807 ----~~~~----------------~~~~---------------~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~ 851 (953)
.... .+.. ..+............++|+|+++|++|..++ ++..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~ 225 (267)
T 3sty_A 148 PTNPPTTLIAGPKFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALK--KEFL 225 (267)
T ss_dssp TTSCCCEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCEECCCHHHHHHHCCCCTTTGGGSCEEEEECCCSCHHH--HHHH
T ss_pred hhcccchhhhhHHHHHHhhcccCCHHHHHHHHHhhccchhHHHHHhhcchhcccccccCCCEEEEEeCCCCccC--HHHH
Confidence 0000 0000 0011112222222235899999999999988 8888
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
.++.+.+.. ++++++|++||... .++.+.+.+.+.+|++++
T Consensus 226 ~~~~~~~~~----~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 266 (267)
T 3sty_A 226 KLMIEKNPP----DEVKEIEGSDHVTM-MSKPQQLFTTLLSIANKY 266 (267)
T ss_dssp HHHHHHSCC----SEEEECTTCCSCHH-HHSHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCC----ceEEEeCCCCcccc-ccChHHHHHHHHHHHHhc
Confidence 887776643 58999999999863 566788889999999874
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.4e-14 Score=153.42 Aligned_cols=266 Identities=9% Similarity=0.030 Sum_probs=175.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccc---------cceeceEEecCCCCCCcceeeeeceEEEEccCCCCC---C
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARP---------EEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL---G 177 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~---~ 177 (953)
.+..++|||||++|+..+.++..-+++.... ......+.++|++......+.++.+.+|++..+... .
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~ 145 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAA 145 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGG
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccc
Confidence 4678899999999999888754444443322 222345667777655554555567899988543211 1
Q ss_pred ceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEec--CC
Q 002209 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN--NS 255 (953)
Q Consensus 178 ~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp--Dg 255 (953)
....+..+. ..+....|+||++.|+..+ ....|.++|+++++........... +..+.|+| +|
T Consensus 146 ~~~~~~~h~--~~v~~~~~~~~~~~l~t~s---------~D~~v~lwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~g 210 (354)
T 2pbi_B 146 KKKSVAMHT--NYLSACSFTNSDMQILTAS---------GDGTCALWDVESGQLLQSFHGHGAD----VLCLDLAPSETG 210 (354)
T ss_dssp GCEEEEECS--SCEEEEEECSSSSEEEEEE---------TTSEEEEEETTTCCEEEEEECCSSC----EEEEEECCCSSC
T ss_pred cceeeeccC--CcEEEEEEeCCCCEEEEEe---------CCCcEEEEeCCCCeEEEEEcCCCCC----eEEEEEEeCCCC
Confidence 123333322 4688899999999998755 3568888999988765443322222 55677776 57
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeCCC-C
Q 002209 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-A 332 (953)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~ 332 (953)
+.|+... ..+.+.++|+ +++.. .+... .
T Consensus 211 ~~l~sgs-------------------------------------------------~Dg~v~~wd~~~~~~~~~~~~h~~ 241 (354)
T 2pbi_B 211 NTFVSGG-------------------------------------------------CDKKAMVWDMRSGQCVQAFETHES 241 (354)
T ss_dssp CEEEEEE-------------------------------------------------TTSCEEEEETTTCCEEEEECCCSS
T ss_pred CEEEEEe-------------------------------------------------CCCeEEEEECCCCcEEEEecCCCC
Confidence 7777651 2245778888 77543 34333 7
Q ss_pred cccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002209 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (953)
Q Consensus 333 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~ 412 (953)
.+..++|+|||+.|+..+.+. .|.+||+.......+..... ...++..+.|+|||+.
T Consensus 242 ~v~~v~~~p~~~~l~s~s~D~-------------~v~lwd~~~~~~~~~~~~~~----------~~~~~~~~~~s~~g~~ 298 (354)
T 2pbi_B 242 DVNSVRYYPSGDAFASGSDDA-------------TCRLYDLRADREVAIYSKES----------IIFGASSVDFSLSGRL 298 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTS-------------CEEEEETTTTEEEEEECCTT----------CCSCEEEEEECTTSSE
T ss_pred CeEEEEEeCCCCEEEEEeCCC-------------eEEEEECCCCcEEEEEcCCC----------cccceeEEEEeCCCCE
Confidence 788999999999998887443 89999998654333222110 0123457899999986
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecc
Q 002209 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
++.. +..+.+.+||+ .++.....+..+...+..++|||||+.|+..+.++
T Consensus 299 l~~g-------------~~d~~i~vwd~--~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 299 LFAG-------------YNDYTINVWDV--LKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp EEEE-------------ETTSCEEEEET--TTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred EEEE-------------ECCCcEEEEEC--CCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence 6654 34568999996 34433445566777788899999999999887654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-13 Score=147.88 Aligned_cols=300 Identities=10% Similarity=0.038 Sum_probs=164.0
Q ss_pred CCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhh
Q 002209 216 SSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTF 295 (953)
Q Consensus 216 ~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (953)
+....+|.+|.++|+...+...... .....++|+|||+ |+++..
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~---~~p~~~a~spdg~-l~~~~~-------------------------------- 58 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAAT---QNPTYLALSAKDC-LYSVDK-------------------------------- 58 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEEC---SCCCCEEECTTCE-EEEEEE--------------------------------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeecc---CCcceEEEccCCe-EEEEEe--------------------------------
Confidence 3456678888888876654322111 0145789999999 665510
Q ss_pred hhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCC---C-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEE
Q 002209 296 QDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP---P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (953)
Q Consensus 296 ~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~---~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~ 370 (953)
.+ ....|+++++ +|+.+.+.. . .....++|||||++|++.... .+.+.+
T Consensus 59 -------~~-------~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~------------~~~v~v 112 (347)
T 3hfq_A 59 -------ED-------DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH------------KGTAEV 112 (347)
T ss_dssp -------ET-------TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT------------TTEEEE
T ss_pred -------cC-------CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC------------CCEEEE
Confidence 00 2357888888 776655543 2 566788999999999887632 237889
Q ss_pred Eecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCce
Q 002209 371 WTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE 449 (953)
Q Consensus 371 ~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~ 449 (953)
|+++ ++..+.+.........|. .......+..++|+|||+ + |... ...+.++++++ ..+++..
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~spdg~-l-~v~~-----------~~~~~v~~~~~--~~~g~~~ 176 (347)
T 3hfq_A 113 MKIAADGALTLTDTVQHSGHGPR-PEQDGSHIHYTDLTPDNR-L-AVID-----------LGSDKVYVYNV--SDAGQLS 176 (347)
T ss_dssp EEECTTSCEEEEEEEECCCCCSS-TTCSSCCEEEEEECTTSC-E-EEEE-----------TTTTEEEEEEE--CTTSCEE
T ss_pred EEeCCCCCeeecceeecCCCCCC-ccccCCCceEEEECCCCc-E-EEEe-----------CCCCEEEEEEE--CCCCcEE
Confidence 9985 444444332211100110 000011234689999999 4 4422 22457888886 2234443
Q ss_pred EEeec----ccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEee--cCCCccccCCCCCCCeEeccCCCE
Q 002209 450 ILHKL----DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF--DRSSEDVYSDPGSPMMRRTSTGTY 523 (953)
Q Consensus 450 ~l~~~----~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~SpDG~~ 523 (953)
.+... ......++|+|||++|++....+ ....+|.++..++ +...+. ...............+.|||||++
T Consensus 177 ~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~-~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 177 EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS-SQIASLKYDTQTG--AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTT-TEEEEEEEETTTT--EEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred EeeeEEcCCCCCCceEEECCCCCEEEEEeCCC-CEEEEEEecCCCC--ceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 33211 11334589999999888765433 3345666665443 222221 111110000000011789999999
Q ss_pred EEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECC-CCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEE
Q 002209 524 VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN-TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSK 602 (953)
Q Consensus 524 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 602 (953)
|+..... ...|.+|+++ ++..+.+...... -..-...+|+|||+.+++..
T Consensus 254 l~v~~~~--------------------~~~v~v~~~~~~g~~~~~~~~~~~---------~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 254 LYVSNRG--------------------YNTLAVFAVTADGHLTLIQQISTE---------GDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp EEEEEET--------------------TTEEEEEEECGGGCEEEEEEEECS---------SSCCCEEEECTTSSEEEEEE
T ss_pred EEEEeCC--------------------CCEEEEEEECCCCcEEEeEEEecC---------CCCcCeEEECCCCCEEEEEE
Confidence 8766521 1247888875 3333333221110 00012357999999877655
Q ss_pred ecCCCCceEEEEECCCCCeeEEec
Q 002209 603 ESKTENTQYYIQSWPDKKSCQITD 626 (953)
Q Consensus 603 ~~~~~p~~l~~~~~~~g~~~~Lt~ 626 (953)
.... .-.+|.++..+|+.+.+..
T Consensus 305 ~~~~-~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 305 QNTD-NATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp TTTT-EEEEEEECTTTCCEEEEEE
T ss_pred cCCC-cEEEEEEeCCCCeEEeccc
Confidence 5322 3446666878888776653
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-13 Score=163.76 Aligned_cols=265 Identities=8% Similarity=-0.029 Sum_probs=162.3
Q ss_pred cccceEec-cCCCeEEEEEeeccccCCCCcceEEEEECCCC-ceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 190 KLNFVTWS-QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-KARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 190 ~~~~~~wS-PDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g-~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
....++|| |||++|||..+.. +++...||++|+++| +. +... +......+.|||||+.|+|+..+..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~----G~~~~~l~v~dl~~g~~~--l~~~----~~~~~~~~~WspDg~~l~y~~~d~~- 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMS----GNEVYTIEFKRISDPSQT--IADK----VSGTNGEIVWGPDHTSLFYVTKDET- 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESS----SSSCEEEEEEETTCTTCC--CCCC----EEEECSCCEECSSTTEEEEEEECTT-
T ss_pred EEeeeEecCCCCCEEEEEEeCC----CCceEEEEEEECCCCCEe--CCcc----ccCceeeEEEecCCCEEEEEEECCC-
Confidence 46779999 9999999988633 444568999999998 62 2110 1111457999999999998832100
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc--eeEeCC-C--CcccccccCC
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGP-P--AVYTSLDPSP 341 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~--~~~l~~-~--~~~~~~~~Sp 341 (953)
....+||++++ ++. .+.+.. . ....++.|||
T Consensus 244 -------------------------------------------~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp 280 (751)
T 2xe4_A 244 -------------------------------------------LRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA 280 (751)
T ss_dssp -------------------------------------------CCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT
T ss_pred -------------------------------------------CCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC
Confidence 01247999999 653 234422 1 4456789999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCc--eE--EEeccCCCcccCCccccccccCccceeeccC---CCCce
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSD---KPSTL 414 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~--~~--~~l~~~~~~~~~p~~~~~~~~~~~~~~wspD---g~~i~ 414 (953)
||++|++.+... ...+|+++|++++ .. +.++... ..+.|++| |+.++
T Consensus 281 Dg~~l~~~~~~~----------~~~~l~~~d~~~~~~~~~~~~l~~~~----------------~~~~~s~~~~~g~~l~ 334 (751)
T 2xe4_A 281 DTNTLCIGSQSP----------ETAEVHLLDLRKGNAHNTLEIVRPRE----------------KGVRYDVQMHGTSHLV 334 (751)
T ss_dssp TSSEEEEEEECS----------SCEEEEEEESSSCTTCCCEEESSCCC----------------TTCCEEEEEETTTEEE
T ss_pred CCCEEEEEecCC----------CCceEEEEECCCCCCCceeEEeecCC----------------CCceEEEeeeeCCEEE
Confidence 999999998532 1348999999864 34 4444321 13446666 88888
Q ss_pred EEEEeccCCCcccccccCCeEEEEecCCCCC-CCceE-EeecccccCCeeeccCCceEEEEEecccCceEEEEEcC----
Q 002209 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQG-EGPEI-LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP---- 488 (953)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g-~~~~~-l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~---- 488 (953)
|.++... ..+..|+++++ ++ ++.+. +........-..|+++++.|++....++ ..+|+++++
T Consensus 335 ~~t~~~~--------a~~~~L~~~d~---~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g-~~~l~~~dl~~~~ 402 (751)
T 2xe4_A 335 ILTNEGG--------AVNHKLLIAPR---GQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAG-LTRIWTMMADSQD 402 (751)
T ss_dssp EEECTTT--------CTTCEEEEEET---TSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETT-EEEEEEEECCTTT
T ss_pred EEeCCCC--------CCCcEEEEEcC---CCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCC-EEEEEEEeccccc
Confidence 8744320 23458999986 32 34344 4333333222345667888888876553 468999996
Q ss_pred ---CCCCCC-cEEeecCCCccccCCCCCCCeEe----ccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECC
Q 002209 489 ---GSKDVA-PRILFDRSSEDVYSDPGSPMMRR----TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN 560 (953)
Q Consensus 489 ---~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~----SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~ 560 (953)
+++ + .+.+.-.......+ +.+ ++|++.++|..... ...+.+|.+|+.
T Consensus 403 ~~~~~g--~~~~~l~l~~~~~~~~------~~~~~~~~~~~~~l~~~~ss~-----------------~~P~~~~~~d~~ 457 (751)
T 2xe4_A 403 GVFKAG--TGLREVVMEEPIFTVH------LVESQMLEYEEPTFRMEYSSL-----------------ATPNTWFDVSPQ 457 (751)
T ss_dssp SCCCTT--TCCEECCCCCSSCEEE------ECGGGCCCTTCSCEEEEEEET-----------------TEEEEEEEECTT
T ss_pred ccccCC--ccceEECCCCceeEEE------eccCcccCCCCCEEEEEEeCC-----------------CCCCEEEEEECC
Confidence 443 3 34432111110000 212 56787777776432 123459999999
Q ss_pred CCceEEEeccC
Q 002209 561 TGSKERIWESD 571 (953)
Q Consensus 561 ~~~~~~l~~~~ 571 (953)
+++.+.|+...
T Consensus 458 ~~~~~~l~~~~ 468 (751)
T 2xe4_A 458 DHSRTAVKVRE 468 (751)
T ss_dssp TCCEEEEEECC
T ss_pred CCcEEEEeccc
Confidence 99888887543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.8e-14 Score=153.41 Aligned_cols=275 Identities=7% Similarity=0.001 Sum_probs=163.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++++.+... ... ++.|.||++.+ ++...+.......
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~-----------------------~~~------d~~v~iw~~~~----~~~~~~~~~~~~~ 66 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNF-----------------------ARG------TGVIQLYEIQH----GDLKLLREIEKAK 66 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC-------------------------CC------CEEEEEEEECS----SSEEEEEEEEESS
T ss_pred ceEEEEEcCCCceEEEecCc-----------------------cCC------CcEEEEEeCCC----CcccceeeecccC
Confidence 57788999999888766531 000 03789999954 3332222122334
Q ss_pred cccceEeccC---CCeEEEEEeeccccCCCCcceEEEEECCCCc-ee-ecccCCCccccccccce------EEecCCeEE
Q 002209 190 KLNFVTWSQD---GKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-AR-PLFQSPDIYLNAIFDNF------VWVNNSTLL 258 (953)
Q Consensus 190 ~~~~~~wSPD---G~~laf~~~~~~~~~~~~~~~l~~~d~~~g~-~~-~lt~~~~~~~~~~~~~~------~wspDg~~l 258 (953)
.+....|+|| |+.|+... ....|.++++.+++ .. .+..+.. . +..+ +|+|||+.|
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~-~----v~~~~~~~~~~~s~~~~~l 132 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGD---------FGGNLHIWNLEAPEMPVYSVKGHKE-I----INAIDGIGGLGIGEGAPEI 132 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEE---------TTSCEEEECTTSCSSCSEEECCCSS-C----EEEEEEESGGGCC-CCCEE
T ss_pred cEEEEEEcCCCCCCceEEEec---------CCCeEEEEeCCCCCccEEEEEeccc-c----eEEEeeccccccCCCccEE
Confidence 7899999999 68888754 25678888988776 33 3322222 1 4455 567899988
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc--eeEeCCC----
Q 002209 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGPP---- 331 (953)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~--~~~l~~~---- 331 (953)
+... ..+.|.++|+ +++ ...+...
T Consensus 133 ~~~~-------------------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~ 163 (357)
T 3i2n_A 133 VTGS-------------------------------------------------RDGTVKVWDPRQKDDPVANMEPVQGEN 163 (357)
T ss_dssp EEEE-------------------------------------------------TTSCEEEECTTSCSSCSEEECCCTTSC
T ss_pred EEEe-------------------------------------------------CCCeEEEEeCCCCCCcceeccccCCCC
Confidence 8661 1235667777 443 3333322
Q ss_pred -Ccccccc----cCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceee
Q 002209 332 -AVYTSLD----PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINW 406 (953)
Q Consensus 332 -~~~~~~~----~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~w 406 (953)
..+..+. |+|||+.|+....+ +.|.+||+.++.......+. ..+..+.|
T Consensus 164 ~~~v~~~~~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~~~-------------~~v~~~~~ 217 (357)
T 3i2n_A 164 KRDCWTVAFGNAYNQEERVVCAGYDN-------------GDIKLFDLRNMALRWETNIK-------------NGVCSLEF 217 (357)
T ss_dssp CCCEEEEEEECCCC-CCCEEEEEETT-------------SEEEEEETTTTEEEEEEECS-------------SCEEEEEE
T ss_pred CCceEEEEEEeccCCCCCEEEEEccC-------------CeEEEEECccCceeeecCCC-------------CceEEEEc
Confidence 1344444 89999999988744 38999999977665443322 23467999
Q ss_pred cc---CCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe-----ecccccCCeeeccCCceEEEEEeccc
Q 002209 407 RS---DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-----KLDLRYGGISWCDDSLALVYESWYKT 478 (953)
Q Consensus 407 sp---Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~-----~~~~~~~~~~~SpDg~~l~~~~~~~~ 478 (953)
+| +++.++.. +..+.+.+|++ .++.....+. .+...+..+.|+|||+.++++...+
T Consensus 218 ~~~~~~~~~l~~~-------------~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d- 281 (357)
T 3i2n_A 218 DRKDISMNKLVAT-------------SLEGKFHVFDM--RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA- 281 (357)
T ss_dssp SCSSSSCCEEEEE-------------ESTTEEEEEEE--EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT-
T ss_pred CCCCCCCCEEEEE-------------CCCCeEEEEeC--cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC-
Confidence 99 88876665 34567888886 2222222222 5566678899999999544443333
Q ss_pred CceEEEEEcCCCCCC---------------CcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 479 RRTRTWVISPGSKDV---------------APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 479 ~~~~l~~~d~~~~~~---------------~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
+..++|.+....... +...........+.. +.|+|||++|++..
T Consensus 282 g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~------~~~s~~~~~l~~s~ 340 (357)
T 3i2n_A 282 GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS------LDWSPDKRGLCVCS 340 (357)
T ss_dssp SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE------EEECSSSTTEEEEE
T ss_pred CcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE------EEEcCCCCeEEEEe
Confidence 224566665332100 011112222222332 78999999998543
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-14 Score=167.65 Aligned_cols=220 Identities=14% Similarity=0.034 Sum_probs=147.0
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEc
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (953)
.+.-.+...||.+++....- ..|+||++||++... ..| ......|+++||.|+.+
T Consensus 237 ~~~~~~~~~dg~~l~~~~~g----------~~p~vv~~HG~~~~~-----------~~~----~~~~~~l~~~G~~v~~~ 291 (555)
T 3i28_A 237 MSHGYVTVKPRVRLHFVELG----------SGPAVCLCHGFPESW-----------YSW----RYQIPALAQAGYRVLAM 291 (555)
T ss_dssp SEEEEEEEETTEEEEEEEEC----------SSSEEEEECCTTCCG-----------GGG----TTHHHHHHHTTCEEEEE
T ss_pred cceeEEEeCCCcEEEEEEcC----------CCCEEEEEeCCCCch-----------hHH----HHHHHHHHhCCCEEEEe
Confidence 45555666789888766541 258899999964221 112 23456788999999995
Q ss_pred CCCCCCCCCChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCC
Q 002209 719 PTTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (953)
Q Consensus 719 ~~~~~~G~G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (953)
|. +|+|.+.... ........|+.++++.+ +.+++.++||||||.+++.++.++|++++++|++++..
T Consensus 292 D~---~G~G~S~~~~~~~~~~~~~~~~d~~~~~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 362 (555)
T 3i28_A 292 DM---KGYGESSAPPEIEEYCMEVLCKEMVTFLDKL------GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPF 362 (555)
T ss_dssp CC---TTSTTSCCCSCGGGGSHHHHHHHHHHHHHHH------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred cC---CCCCCCCCCCCcccccHHHHHHHHHHHHHHc------CCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccCC
Confidence 54 6777764422 22566677777777765 34689999999999999999999999999999988754
Q ss_pred CCCCCCcCcc-------------------------------------------------------------c---ccch-
Q 002209 795 NRTLTPFGFQ-------------------------------------------------------------N---EDRT- 809 (953)
Q Consensus 795 d~~~~~~~~~-------------------------------------------------------------~---~~~~- 809 (953)
.......... . ....
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (555)
T 3i28_A 363 IPANPNMSPLESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMV 442 (555)
T ss_dssp CCCCTTSCHHHHHHTCGGGHHHHHHHSTTHHHHHHHHCHHHHHHHHSCCTTSCCCCCSSHHHHTSSSTTSCSSCCCCTTC
T ss_pred CCCCcccchHHHHhcCCccchhHHhhCCCchHHHHhhhHHHHHHHHhccccccccccccccccccccccCcccccccccc
Confidence 3111000000 0 0000
Q ss_pred hhhhHHHH----------------------HhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEE
Q 002209 810 LWEATSTY----------------------VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRL 867 (953)
Q Consensus 810 ~~~~~~~~----------------------~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~ 867 (953)
..+....+ ...+....+.++++|+|+++|++|..+| +..+..+.+.+. .+++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~--~~~~~~~~~~~~----~~~~ 516 (555)
T 3i28_A 443 TEEEIQFYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLV--PQMSQHMEDWIP----HLKR 516 (555)
T ss_dssp CHHHHHHHHHHHTTTTTHHHHHTTSCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSC--GGGGTTGGGTCT----TCEE
T ss_pred CHHHHHHHHHHHhcccchhHHHHHHhccccchhhccccccccccCEEEEEeCCCCCcC--HHHHHHHHhhCC----CceE
Confidence 00000000 0012223446789999999999999998 888877766653 3589
Q ss_pred EEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 868 VILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 868 ~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
++++++||... .+....+.+.+.+||++...
T Consensus 517 ~~~~~~gH~~~-~e~p~~~~~~i~~fl~~~~~ 547 (555)
T 3i28_A 517 GHIEDCGHWTQ-MDKPTEVNQILIKWLDSDAR 547 (555)
T ss_dssp EEETTCCSCHH-HHSHHHHHHHHHHHHHHHTC
T ss_pred EEeCCCCCCcc-hhCHHHHHHHHHHHHHhccC
Confidence 99999999753 45677888999999998764
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-14 Score=149.39 Aligned_cols=211 Identities=18% Similarity=0.132 Sum_probs=138.0
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCC
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (953)
..+|.+++...+-|.+ .+.|.||++||..... ..| . .....|+ .+|.|++ +|.+|
T Consensus 8 ~~~g~~l~y~~~g~~~------~~~~~vvllHG~~~~~-----------~~~---~-~~~~~L~-~~~~vi~---~D~~G 62 (266)
T 2xua_A 8 AVNGTELHYRIDGERH------GNAPWIVLSNSLGTDL-----------SMW---A-PQVAALS-KHFRVLR---YDTRG 62 (266)
T ss_dssp ECSSSEEEEEEESCSS------SCCCEEEEECCTTCCG-----------GGG---G-GGHHHHH-TTSEEEE---ECCTT
T ss_pred EECCEEEEEEEcCCcc------CCCCeEEEecCccCCH-----------HHH---H-HHHHHHh-cCeEEEE---ecCCC
Confidence 3588888887775421 1247899999953111 112 1 2234454 5699999 55578
Q ss_pred CCChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC-cC
Q 002209 726 EGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-FG 802 (953)
Q Consensus 726 ~G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~-~~ 802 (953)
+|.+... .......++|+.+.++.+ ..+++.|+||||||.+++.+|.++|++++++|++++........ +.
T Consensus 63 ~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~ 136 (266)
T 2xua_A 63 HGHSEAPKGPYTIEQLTGDVLGLMDTL------KIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWV 136 (266)
T ss_dssp STTSCCCSSCCCHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhc------CCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHH
Confidence 8887542 223566778887777765 23589999999999999999999999999999988754321000 00
Q ss_pred ----------ccc---c-----cchhh--hh---------------H-------HHHHhcCcccccCCCCCcEEEEEeCC
Q 002209 803 ----------FQN---E-----DRTLW--EA---------------T-------STYVEMSPFMSANKLKKPILLVHGEE 840 (953)
Q Consensus 803 ----------~~~---~-----~~~~~--~~---------------~-------~~~~~~sp~~~~~~i~~P~Li~~G~~ 840 (953)
... . ....+ .. . ..+...+....+.++++|+|+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~ 216 (266)
T 2xua_A 137 PRAVKARTEGMHALADAVLPRWFTADYMEREPVVLAMIRDVFVHTDKEGYASNCEAIDAADLRPEAPGIKVPALVISGTH 216 (266)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHSCHHHHHHCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCGGGGGGCCSCEEEEEETT
T ss_pred HHHHHHHhcChHHHHHHHHHHHcCcccccCCHHHHHHHHHHHhhCCHHHHHHHHHHHhccCchhhhccCCCCEEEEEcCC
Confidence 000 0 00000 00 0 00112233345677899999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
|..+| ++.++++.+.+.. .++++++ +||... .+..+.+.+.+.+||.
T Consensus 217 D~~~~--~~~~~~~~~~~~~----~~~~~~~-~gH~~~-~e~p~~~~~~i~~fl~ 263 (266)
T 2xua_A 217 DLAAT--PAQGRELAQAIAG----ARYVELD-ASHISN-IERADAFTKTVVDFLT 263 (266)
T ss_dssp CSSSC--HHHHHHHHHHSTT----CEEEEES-CCSSHH-HHTHHHHHHHHHHHHT
T ss_pred CCcCC--HHHHHHHHHhCCC----CEEEEec-CCCCch-hcCHHHHHHHHHHHHH
Confidence 99998 8888888776644 4889999 999863 4556778888888875
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.9e-14 Score=155.85 Aligned_cols=216 Identities=15% Similarity=0.138 Sum_probs=136.2
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEEcCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIG 725 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G 725 (953)
.+|.++++..+-|++- ..+-+.||++||++.... .| .. ....|++ .||.|++ +|.+|
T Consensus 35 ~~g~~l~y~~~G~~~~----~~~g~plvllHG~~~~~~-----------~w---~~-~~~~l~~~~~~~Via---~D~rG 92 (330)
T 3nwo_A 35 FGDHETWVQVTTPENA----QPHALPLIVLHGGPGMAH-----------NY---VA-NIAALADETGRTVIH---YDQVG 92 (330)
T ss_dssp ETTEEEEEEEECCSSC----CTTCCCEEEECCTTTCCS-----------GG---GG-GGGGHHHHHTCCEEE---ECCTT
T ss_pred ecCcEEEEEEecCccC----CCCCCcEEEECCCCCCch-----------hH---HH-HHHHhccccCcEEEE---ECCCC
Confidence 4788898888866421 101124778999642211 11 11 1234554 6999999 55578
Q ss_pred CCChhh--h---h-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC-
Q 002209 726 EGDEEA--N---D-RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL- 798 (953)
Q Consensus 726 ~G~~~~--~---~-~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~- 798 (953)
+|.|.. . . ......++|+.+.++.+ +.+++.|+||||||.+++.+|.++|++++++|++++......
T Consensus 93 ~G~S~~~~~~~~~~~~~~~~a~dl~~ll~~l------g~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~~~~~~~ 166 (330)
T 3nwo_A 93 CGNSTHLPDAPADFWTPQLFVDEFHAVCTAL------GIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASMRLW 166 (330)
T ss_dssp STTSCCCTTSCGGGCCHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCCSBHHHH
T ss_pred CCCCCCCCCCccccccHHHHHHHHHHHHHHc------CCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCCcchHHH
Confidence 887743 1 1 12466678887777765 235899999999999999999999999999998876432100
Q ss_pred ----------CCc------------C-ccc-----c---------c-chhhh------------hHHHHHh---------
Q 002209 799 ----------TPF------------G-FQN-----E---------D-RTLWE------------ATSTYVE--------- 819 (953)
Q Consensus 799 ----------~~~------------~-~~~-----~---------~-~~~~~------------~~~~~~~--------- 819 (953)
.+. . +.. . . ...+. ....+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 3nwo_A 167 SEAAGDLRAQLPAETRAALDRHEAAGTITHPDYLQAAAEFYRRHVCRVVPTPQDFADSVAQMEAEPTVYHTMNGPNEFHV 246 (330)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHHHHSCHHHHHHTCSCSSSC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccccCCCHHHHHHHHhhccchhhhhcccCchhhhh
Confidence 000 0 000 0 0 00000 0000110
Q ss_pred ------cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 002209 820 ------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (953)
Q Consensus 820 ------~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~f 893 (953)
++....+.+|++|+||++|++|..+| ..+.++.+.+. ..+++++|++||.. ..+..+.+.+.+.+|
T Consensus 247 ~~~~~~~~~~~~l~~i~~P~Lvi~G~~D~~~p---~~~~~~~~~ip----~~~~~~i~~~gH~~-~~e~p~~~~~~i~~F 318 (330)
T 3nwo_A 247 VGTLGDWSVIDRLPDVTAPVLVIAGEHDEATP---KTWQPFVDHIP----DVRSHVFPGTSHCT-HLEKPEEFRAVVAQF 318 (330)
T ss_dssp CSGGGGCBCGGGGGGCCSCEEEEEETTCSSCH---HHHHHHHHHCS----SEEEEEETTCCTTH-HHHSHHHHHHHHHHH
T ss_pred hccccCCchhhhcccCCCCeEEEeeCCCccCh---HHHHHHHHhCC----CCcEEEeCCCCCch-hhcCHHHHHHHHHHH
Confidence 11223456789999999999998764 45566655443 46999999999976 356778899999999
Q ss_pred HHHhc
Q 002209 894 LQKYC 898 (953)
Q Consensus 894 l~~~l 898 (953)
|.++-
T Consensus 319 L~~~~ 323 (330)
T 3nwo_A 319 LHQHD 323 (330)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 98864
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-12 Score=148.73 Aligned_cols=257 Identities=9% Similarity=0.037 Sum_probs=145.0
Q ss_pred ceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCcccc
Q 002209 114 LSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNF 193 (953)
Q Consensus 114 ~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~ 193 (953)
..|||||++|+....+ +.|.+|++.. +....+. ......+..
T Consensus 103 ~~~~~~~~~l~~~~~d---------------------------------g~i~iwd~~~----~~~~~~~-~~h~~~v~~ 144 (420)
T 3vl1_A 103 DTAKLQMRRFILGTTE---------------------------------GDIKVLDSNF----NLQREID-QAHVSEITK 144 (420)
T ss_dssp EEECSSSCEEEEEETT---------------------------------SCEEEECTTS----CEEEEET-TSSSSCEEE
T ss_pred EEEecCCCEEEEEECC---------------------------------CCEEEEeCCC----cceeeec-ccccCccEE
Confidence 4689999999988775 3679999843 3332221 122347899
Q ss_pred eEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCC
Q 002209 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (953)
Q Consensus 194 ~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 273 (953)
+.|+|||+.|+... ....|.++|+.+++........... +..++|+|||+.|+....+...
T Consensus 145 ~~~~~~~~~l~s~s---------~d~~i~iwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~~~d~~v------ 205 (420)
T 3vl1_A 145 LKFFPSGEALISSS---------QDMQLKIWSVKDGSNPRTLIGHRAT----VTDIAIIDRGRNVLSASLDGTI------ 205 (420)
T ss_dssp EEECTTSSEEEEEE---------TTSEEEEEETTTCCCCEEEECCSSC----EEEEEEETTTTEEEEEETTSCE------
T ss_pred EEECCCCCEEEEEe---------CCCeEEEEeCCCCcCceEEcCCCCc----EEEEEEcCCCCEEEEEcCCCcE------
Confidence 99999999888755 2568999999877654333222222 7789999999999876321111
Q ss_pred CCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CCceeEeC-CCCcccccccCCCCcEEEEEE
Q 002209 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIG-PPAVYTSLDPSPDEKYILISS 350 (953)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g~~~~l~-~~~~~~~~~~SpDG~~l~~~~ 350 (953)
.+++......... +....+ ....+..+.. .+...... ....+..++|||||++|+...
T Consensus 206 ------~iwd~~~~~~~~~------~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (420)
T 3vl1_A 206 ------RLWECGTGTTIHT------FNRKEN-------PHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH 266 (420)
T ss_dssp ------EEEETTTTEEEEE------ECBTTB-------TTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE
T ss_pred ------EEeECCCCceeEE------eecCCC-------CCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc
Confidence 1111110000000 000000 0011111111 11000001 115567899999999998877
Q ss_pred ecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccc
Q 002209 351 IHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEV 429 (953)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~ 429 (953)
.+. .|.+||+..+. ...+... ....+..++|+|||+.+++..
T Consensus 267 ~dg-------------~i~i~d~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~l~~g------------ 309 (420)
T 3vl1_A 267 VSG-------------VITVHNVFSKEQTIQLPSK------------FTCSCNSLTVDGNNANYIYAG------------ 309 (420)
T ss_dssp TTS-------------CEEEEETTTCCEEEEECCT------------TSSCEEEEEECSSCTTEEEEE------------
T ss_pred CCC-------------eEEEEECCCCceeEEcccc------------cCCCceeEEEeCCCCCEEEEE------------
Confidence 443 89999998544 3333221 112356799999998544441
Q ss_pred ccCCeEEEEecCCCCCCC-ceEEee-cccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 430 TPRDIIYTQQAEPVQGEG-PEILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 430 ~~~~~l~~~d~~~~~g~~-~~~l~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
+..+.|.+||+ .++.. ...+.. ....+..+ ++++|+.|+..+.++ ..++|.+..
T Consensus 310 ~~dg~i~vwd~--~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~--~v~iw~~~~ 365 (420)
T 3vl1_A 310 YENGMLAQWDL--RSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDT--SIKLDIISD 365 (420)
T ss_dssp ETTSEEEEEET--TCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTE--EEEEEEECC
T ss_pred eCCCeEEEEEc--CCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCc--cEEEEeccC
Confidence 34568999997 33333 344544 33344445 667888777665443 236666554
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-12 Score=141.04 Aligned_cols=245 Identities=9% Similarity=0.046 Sum_probs=159.7
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+....|||||++|+... ....|.++|+++++..+........ +..+.|+|||+.|+...
T Consensus 14 ~~V~~~~fsp~~~~l~s~~---------~dg~v~lWd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~s------ 74 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTL---------YSGRVELWNYETQVEVRSIQVTETP----VRAGKFIARKNWIIVGS------ 74 (304)
T ss_dssp SCEEEEEECSSSSEEEEEE---------TTSEEEEEETTTTEEEEEEECCSSC----EEEEEEEGGGTEEEEEE------
T ss_pred CceEEEEECCCCCEEEEEc---------CCCcEEEEECCCCceeEEeeccCCc----EEEEEEeCCCCEEEEEC------
Confidence 3688999999999998855 2567888899887654433322222 67889999999998761
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-CcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDG~~ 345 (953)
....|.++|+ +|+. ..+... ..+..++|+|||++
T Consensus 75 -------------------------------------------~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 111 (304)
T 2ynn_A 75 -------------------------------------------DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY 111 (304)
T ss_dssp -------------------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE
T ss_pred -------------------------------------------CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCE
Confidence 2245777788 6643 344444 77889999999999
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCc-eEEE-eccCCCcccCCccccccccCccceeeccC-CCCceEEEEeccC
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSD-KPSTLYWAETQDG 422 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~-l~~~~~~~~~p~~~~~~~~~~~~~~wspD-g~~i~~~~~~~~~ 422 (953)
|+..+.+. .|.+||+..+ .... +..+ ...+..++|+|+ ++.++..
T Consensus 112 l~sgs~D~-------------~v~lWd~~~~~~~~~~~~~h-------------~~~v~~v~~~p~~~~~l~sg------ 159 (304)
T 2ynn_A 112 VLSGSDDL-------------TVKLWNWENNWALEQTFEGH-------------EHFVMCVAFNPKDPSTFASG------ 159 (304)
T ss_dssp EEEEETTS-------------CEEEEEGGGTTEEEEEECCC-------------CSCEEEEEECTTCTTEEEEE------
T ss_pred EEEECCCC-------------eEEEEECCCCcchhhhhccc-------------CCcEEEEEECCCCCCEEEEE------
Confidence 98777443 8999999754 3332 2222 133467899995 5544443
Q ss_pred CCcccccccCCeEEEEecCCCCCCCceEEe-ecccccCCeeecc--CCceEEEEEecccCceEEEEEcCCCCCCCcEEee
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCD--DSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~-~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 499 (953)
+..+.|.+||+ ..+.....+. .....+..+.|+| |++.|+..+.++ .+.++|+.++ +.....
T Consensus 160 -------s~D~~v~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~----~i~iWd~~~~--~~~~~~ 224 (304)
T 2ynn_A 160 -------CLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL----TIKIWDYQTK--SCVATL 224 (304)
T ss_dssp -------ETTSEEEEEET--TCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS----EEEEEETTTT--EEEEEE
T ss_pred -------eCCCeEEEEEC--CCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC----eEEEEeCCCC--ccceee
Confidence 44568899996 2222333333 2334455677776 777777766543 4555566654 333333
Q ss_pred cCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEec
Q 002209 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 500 ~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~ 569 (953)
......+.. +.|+|+++.|+....+. .|.+||+.+++..+...
T Consensus 225 ~~h~~~v~~------~~~~p~~~~l~s~s~Dg---------------------~i~iWd~~~~~~~~~~~ 267 (304)
T 2ynn_A 225 EGHMSNVSF------AVFHPTLPIIISGSEDG---------------------TLKIWNSSTYKVEKTLN 267 (304)
T ss_dssp ECCSSCEEE------EEECSSSSEEEEEETTS---------------------CEEEEETTTCCEEEEEC
T ss_pred CCCCCCEEE------EEECCCCCEEEEEcCCC---------------------eEEEEECCCCceeeecc
Confidence 333333333 78999999888776322 39999999888765544
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-14 Score=154.81 Aligned_cols=207 Identities=14% Similarity=0.096 Sum_probs=134.4
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|..+....+-| .|+||++||+.... ..| ...+..|++ ||.|+.+|. +|+
T Consensus 55 ~~~~~~~~~~~g~----------~p~vv~lhG~~~~~-----------~~~----~~~~~~L~~-~~~v~~~D~---~G~ 105 (314)
T 3kxp_A 55 IGRITLNVREKGS----------GPLMLFFHGITSNS-----------AVF----EPLMIRLSD-RFTTIAVDQ---RGH 105 (314)
T ss_dssp CSSCEEEEEEECC----------SSEEEEECCTTCCG-----------GGG----HHHHHTTTT-TSEEEEECC---TTS
T ss_pred ECCEEEEEEecCC----------CCEEEEECCCCCCH-----------HHH----HHHHHHHHc-CCeEEEEeC---CCc
Confidence 4777777665422 57899999963111 111 123334444 799999555 567
Q ss_pred CChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC-----
Q 002209 727 GDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT----- 799 (953)
Q Consensus 727 G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~----- 799 (953)
|.+... ........+|+.++++++ +.++++|+|||+||.+++.++.++|++++++|++++.......
T Consensus 106 G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 179 (314)
T 3kxp_A 106 GLSDKPETGYEANDYADDIAGLIRTL------ARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDAL 179 (314)
T ss_dssp TTSCCCSSCCSHHHHHHHHHHHHHHH------TSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHH
Confidence 766422 223566677777777665 2368999999999999999999999999999999875432100
Q ss_pred -------CcCccccc--chh---------hhhHHHHHh---------------------------cCcccccCCCCCcEE
Q 002209 800 -------PFGFQNED--RTL---------WEATSTYVE---------------------------MSPFMSANKLKKPIL 834 (953)
Q Consensus 800 -------~~~~~~~~--~~~---------~~~~~~~~~---------------------------~sp~~~~~~i~~P~L 834 (953)
...+.... ... ......+.. .+....+.++++|+|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~L 259 (314)
T 3kxp_A 180 EARVNAGSQLFEDIKAVEAYLAGRYPNIPADAIRIRAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRDVTKPVL 259 (314)
T ss_dssp HHHTTTTCSCBSSHHHHHHHHHHHSTTSCHHHHHHHHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHHCCSCEE
T ss_pred HHHhhhchhhhcCHHHHHHHHHhhcccCchHHHHHHhhhhhcccccccccccChhhhhhhccccCcchhhHhhcCCCCEE
Confidence 00000000 000 000000000 033344567899999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 835 LVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 835 i~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
+++|++|..+| ++.+.++++.++. ++++++|++||.+. .+....+.+.+.+||+
T Consensus 260 ii~G~~D~~~~--~~~~~~~~~~~~~----~~~~~~~g~gH~~~-~e~~~~~~~~i~~fl~ 313 (314)
T 3kxp_A 260 IVRGESSKLVS--AAALAKTSRLRPD----LPVVVVPGADHYVN-EVSPEITLKAITNFID 313 (314)
T ss_dssp EEEETTCSSSC--HHHHHHHHHHCTT----SCEEEETTCCSCHH-HHCHHHHHHHHHHHHH
T ss_pred EEecCCCccCC--HHHHHHHHHhCCC----ceEEEcCCCCCcch-hhCHHHHHHHHHHHHh
Confidence 99999999998 8888888877743 47889999999863 4556778888888886
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-12 Score=143.35 Aligned_cols=300 Identities=9% Similarity=0.042 Sum_probs=182.0
Q ss_pred CcccceEeccCC-CeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEec-CCeEEEEEecCCC
Q 002209 189 AKLNFVTWSQDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN-NSTLLVCTIPLLR 266 (953)
Q Consensus 189 ~~~~~~~wSPDG-~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~ 266 (953)
..+....|+||| +.|+.... ...|.++++.+++......... ....+..++|+| |++.|+...
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~---- 138 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSK---------GGDIILWDYDVQNKTSFIQGMG--PGDAITGMKFNQFNTNQLFVSS---- 138 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEB---------TSCEEEEETTSTTCEEEECCCS--TTCBEEEEEEETTEEEEEEEEE----
T ss_pred CCEEEEEECCCCCCEEEEEcC---------CCeEEEEeCCCcccceeeecCC--cCCceeEEEeCCCCCCEEEEEe----
Confidence 468899999999 77776542 5578888998877655433111 112277899999 667777551
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC----CcccccccCC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----AVYTSLDPSP 341 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~----~~~~~~~~Sp 341 (953)
..+.|.++|+ ++....+... ..+..++|+|
T Consensus 139 ---------------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 173 (383)
T 3ei3_B 139 ---------------------------------------------IRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV 173 (383)
T ss_dssp ---------------------------------------------TTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEET
T ss_pred ---------------------------------------------CCCEEEEEECCCCceEEEeccCCCCCCeEEEEECC
Confidence 2245677788 5444444322 4578899999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
||+.|+....+ +.|.+||+++.....+..+. ..+..++|+||++.+++..
T Consensus 174 ~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~~l~s~---- 223 (383)
T 3ei3_B 174 SRQMLATGDST-------------GRLLLLGLDGHEIFKEKLHK-------------AKVTHAEFNPRCDWLMATS---- 223 (383)
T ss_dssp TTTEEEEEETT-------------SEEEEEETTSCEEEEEECSS-------------SCEEEEEECSSCTTEEEEE----
T ss_pred CCCEEEEECCC-------------CCEEEEECCCCEEEEeccCC-------------CcEEEEEECCCCCCEEEEE----
Confidence 99999888744 38999999876666665432 3456899999998544441
Q ss_pred CCCcccccccCCeEEEEecCCCCC-CCceEEeecccccCCeeecc-CCceEEEEEecccCceEEEEEcCCCCCCCcEEee
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQG-EGPEILHKLDLRYGGISWCD-DSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g-~~~~~l~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 499 (953)
+..+.|.+||+..... +.......+...+..+.|+| ||+.|+....++ .|.++|+.++. ....+.
T Consensus 224 --------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~----~i~iwd~~~~~-~~~~~~ 290 (383)
T 3ei3_B 224 --------SVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRN----EIRVYSSYDWS-KPDQII 290 (383)
T ss_dssp --------ETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSS----EEEEEETTBTT-SCSEEE
T ss_pred --------eCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCC----cEEEEECCCCc-cccccc
Confidence 3355789999711110 22333335666778899999 999988776543 56677776653 222222
Q ss_pred cCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeee
Q 002209 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (953)
Q Consensus 500 ~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~ 579 (953)
.... ..+.........|+|++..++...... +.+ .+ +....|++||+.+++.......... ...
T Consensus 291 ~~~~-~~~~~~~~~~~~~~p~~~~~~~~~s~d---g~~---s~------s~d~~i~iwd~~~~~~~~~l~~~~~---~~~ 354 (383)
T 3ei3_B 291 IHPH-RQFQHLTPIKATWHPMYDLIVAGRYPD---DQL---LL------NDKRTIDIYDANSGGLVHQLRDPNA---AGI 354 (383)
T ss_dssp ECCB-CCCTTSCCCCCEECSSSSEEEEECBCC---TTT---CT------TCCCCEEEEETTTCCEEEEECBTTB---CSC
T ss_pred cccc-cccccccceEEeccCCCCceEEEecCC---ccc---cc------CCCCeEEEEecCCCceeeeecCCCC---Cce
Confidence 1111 011111111246888888776554321 111 11 1234599999998887555443211 000
Q ss_pred EeeccCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002209 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (953)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 618 (953)
. ...+|++|++.++.. + . ..|.+|++.+
T Consensus 355 ~------~~~~~s~~g~~l~s~-s-d---~~i~iw~~~~ 382 (383)
T 3ei3_B 355 I------SLNKFSPTGDVLASG-M-G---FNILIWNRED 382 (383)
T ss_dssp C------CEEEECTTSSEEEEE-E-T---TEEEEEECC-
T ss_pred E------EEEEEecCccEEEEe-c-C---CcEEEEecCC
Confidence 0 113689999977654 3 2 4688888653
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.8e-13 Score=149.74 Aligned_cols=265 Identities=12% Similarity=0.095 Sum_probs=170.3
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+....|+||++.|+... ....|.++|+.+++..+........ +..++|+|||+.|+....
T Consensus 109 ~~V~~~~~~p~~~~l~s~s---------~Dg~i~vwd~~~~~~~~~l~~h~~~----V~~v~~~~~~~~l~sgs~----- 170 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSAS---------EDATIKVWDYETGDFERTLKGHTDS----VQDISFDHSGKLLASCSA----- 170 (410)
T ss_dssp SCEEEEEECSSSSEEEEEE---------SSSCEEEEETTTCCCCEEECCCSSC----EEEEEECTTSSEEEEEET-----
T ss_pred CcEEEEEEcCCCCEEEEEe---------CCCeEEEEECCCCcEEEEEeccCCc----EEEEEEcCCCCEEEEEeC-----
Confidence 4688999999999888755 2567888899888765443323222 778999999998886621
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-CcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDG~~ 345 (953)
.+.|.++|+ +++. +.+... ..+..++|+|||++
T Consensus 171 --------------------------------------------D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 206 (410)
T 1vyh_C 171 --------------------------------------------DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 206 (410)
T ss_dssp --------------------------------------------TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSE
T ss_pred --------------------------------------------CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCE
Confidence 133446677 5543 333333 67889999999999
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
|+..+.+ +.|.+||+..+. .+.+..+. ..+..+.|+|||+.++..
T Consensus 207 l~s~s~D-------------~~i~~wd~~~~~~~~~~~~h~-------------~~v~~~~~~~~g~~l~s~-------- 252 (410)
T 1vyh_C 207 IVSASRD-------------KTIKMWEVQTGYCVKTFTGHR-------------EWVRMVRPNQDGTLIASC-------- 252 (410)
T ss_dssp EEEEETT-------------SEEEEEETTTCCEEEEEECCS-------------SCEEEEEECTTSSEEEEE--------
T ss_pred EEEEeCC-------------CeEEEEECCCCcEEEEEeCCC-------------ccEEEEEECCCCCEEEEE--------
Confidence 9887744 389999998544 34443322 234678999999866554
Q ss_pred cccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccC--------------------CceEEEEEecccCceEEE
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD--------------------SLALVYESWYKTRRTRTW 484 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpD--------------------g~~l~~~~~~~~~~~~l~ 484 (953)
+..+.+.+|++ .++.....+..+...+..+.|+|+ |..|+..+.++ .+.
T Consensus 253 -----s~D~~v~vwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~----~i~ 321 (410)
T 1vyh_C 253 -----SNDQTVRVWVV--ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK----TIK 321 (410)
T ss_dssp -----ETTSCEEEEET--TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS----EEE
T ss_pred -----cCCCeEEEEEC--CCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC----eEE
Confidence 44567889986 222223345556666778899997 45566655433 466
Q ss_pred EEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCce
Q 002209 485 VISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSK 564 (953)
Q Consensus 485 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~ 564 (953)
++|+.++ ............+.. +.|+|+|++|+....+ ..|++||+.+++.
T Consensus 322 iwd~~~~--~~~~~~~~h~~~v~~------v~~~~~g~~l~s~s~D---------------------~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 322 MWDVSTG--MCLMTLVGHDNWVRG------VLFHSGGKFILSCADD---------------------KTLRVWDYKNKRC 372 (410)
T ss_dssp EEETTTT--EEEEEEECCSSCEEE------EEECSSSSCEEEEETT---------------------TEEEEECCTTSCC
T ss_pred EEECCCC--ceEEEEECCCCcEEE------EEEcCCCCEEEEEeCC---------------------CeEEEEECCCCce
Confidence 6677664 222223333332333 7899999999876632 2499999987765
Q ss_pred EEEeccCcccceeeeEeeccCCccccccccCCEEEE
Q 002209 565 ERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILT 600 (953)
Q Consensus 565 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 600 (953)
......... .+.. .+|+|++..++.
T Consensus 373 ~~~~~~h~~----~v~~-------l~~~~~~~~l~s 397 (410)
T 1vyh_C 373 MKTLNAHEH----FVTS-------LDFHKTAPYVVT 397 (410)
T ss_dssp CEEEECCSS----CEEE-------EEECSSSSCEEE
T ss_pred EEEEcCCCC----cEEE-------EEEcCCCCEEEE
Confidence 443332211 1222 367888886653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-12 Score=138.29 Aligned_cols=268 Identities=10% Similarity=0.142 Sum_probs=168.7
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+....|+|||++|+.... ...|.++++.+++........... +..++|+|||+.|+...
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~---------dg~i~iw~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~~------ 84 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSA---------DKLIKIWGAYDGKFEKTISGHKLG----ISDVAWSSDSNLLVSAS------ 84 (312)
T ss_dssp SCEEEEEECTTSSEEEEEET---------TSCEEEEETTTCCEEEEECCCSSC----EEEEEECTTSSEEEEEE------
T ss_pred CcEEEEEECCCCCEEEEeeC---------CCeEEEEeCCCcccchhhccCCCc----eEEEEEcCCCCEEEEEC------
Confidence 46889999999999988552 456788888877765544333322 77899999999998761
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-CcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDG~~ 345 (953)
..+.|.++|+ +++. ..+... ..+..+.|+|||+.
T Consensus 85 -------------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 121 (312)
T 4ery_A 85 -------------------------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 121 (312)
T ss_dssp -------------------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE
T ss_pred -------------------------------------------CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 2245777788 6643 344444 67788999999999
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
|+..+.+. .|.+||+..+. .+.+..+. ..+..+.|+|||+.++..
T Consensus 122 l~s~~~d~-------------~i~iwd~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~-------- 167 (312)
T 4ery_A 122 IVSGSFDE-------------SVRIWDVKTGKCLKTLPAHS-------------DPVSAVHFNRDGSLIVSS-------- 167 (312)
T ss_dssp EEEEETTS-------------CEEEEETTTCCEEEEECCCS-------------SCEEEEEECTTSSEEEEE--------
T ss_pred EEEEeCCC-------------cEEEEECCCCEEEEEecCCC-------------CcEEEEEEcCCCCEEEEE--------
Confidence 98877443 89999998543 34443321 234678999999866554
Q ss_pred cccccccCCeEEEEecCCCCCCCc-eEEe-ecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCC
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGP-EILH-KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~-~~l~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 502 (953)
+..+.+.+||+ ..++. ..+. .....+..+.|+|+|+.|+....++ .+.++|+.++ +........
T Consensus 168 -----~~d~~i~~wd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~--~~~~~~~~~ 233 (312)
T 4ery_A 168 -----SYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN----TLKLWDYSKG--KCLKTYTGH 233 (312)
T ss_dssp -----ETTSCEEEEET---TTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT----EEEEEETTTT--EEEEEECSS
T ss_pred -----eCCCcEEEEEC---CCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC----eEEEEECCCC--cEEEEEEec
Confidence 44567899996 33332 2232 2233456689999999988876543 5666677664 222222222
Q ss_pred CccccCCCCCCCeEec-cCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEe
Q 002209 503 SEDVYSDPGSPMMRRT-STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVA 581 (953)
Q Consensus 503 ~~~~~~~~~~p~~~~S-pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~ 581 (953)
....+. ....++ ++|++|+....+ ..|++||+.+++.......... .+..
T Consensus 234 ~~~~~~----~~~~~~~~~~~~l~sg~~d---------------------g~i~vwd~~~~~~~~~~~~h~~----~v~~ 284 (312)
T 4ery_A 234 KNEKYC----IFANFSVTGGKWIVSGSED---------------------NLVYIWNLQTKEIVQKLQGHTD----VVIS 284 (312)
T ss_dssp CCSSSC----CCEEEECSSSCEEEECCTT---------------------SCEEEEETTTCCEEEEECCCSS----CEEE
T ss_pred CCceEE----EEEEEEeCCCcEEEEECCC---------------------CEEEEEECCCchhhhhhhccCC----cEEE
Confidence 111110 012343 566666554321 2499999998887655543322 1111
Q ss_pred eccCCccccccccCCEEEEEE
Q 002209 582 LMSDQTEGDLYLNQLKILTSK 602 (953)
Q Consensus 582 ~~~~~~~~~~s~dg~~l~~~~ 602 (953)
.+|+|++..++...
T Consensus 285 -------~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 285 -------TACHPTENIIASAA 298 (312)
T ss_dssp -------EEECSSSSEEEEEE
T ss_pred -------EeecCcCCceEEEE
Confidence 36788888766543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-12 Score=152.11 Aligned_cols=310 Identities=13% Similarity=0.084 Sum_probs=182.1
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEc--cCCCCCCceeeeecCCCC
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQL--FPDGKLGQEIEIQGFPDG 188 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~--~~~g~~~~~~~l~~~~~~ 188 (953)
+..++|||||++|+....+ +.|.+||+ .+ ++ .+..++.+
T Consensus 181 ~~~v~~spdg~~l~v~~~d---------------------------------~~V~v~D~~~~t----~~--~~~~i~~g 221 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRD---------------------------------ARIDMIDLWAKE----PT--KVAEIKIG 221 (543)
T ss_dssp EEEEEECTTSCEEEEEETT---------------------------------SEEEEEETTSSS----CE--EEEEEECC
T ss_pred cceEEECCCCCEEEEECCC---------------------------------CeEEEEECcCCC----Cc--EEEEEecC
Confidence 3456789999888777653 36789998 32 22 12223344
Q ss_pred CcccceEecc----CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc-------ccccccceEEecCCeE
Q 002209 189 AKLNFVTWSQ----DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY-------LNAIFDNFVWVNNSTL 257 (953)
Q Consensus 189 ~~~~~~~wSP----DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~-------~~~~~~~~~wspDg~~ 257 (953)
......+||| ||++|+.... ....|.++|..+++..+........ ....+..+.+|||++.
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~--------~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~ 293 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAY--------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE 293 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEE--------ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred CCcceEEeCCCcCCCCCEEEEEEc--------cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence 5678899999 9999877543 1457888899888765543321100 0001457889998887
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce---eEeCCCCc
Q 002209 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV---KEIGPPAV 333 (953)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~---~~l~~~~~ 333 (953)
++++.. ..+.|+++|. +++. ..+.....
T Consensus 294 ~~vs~~------------------------------------------------~~g~i~vvd~~~~~~l~~~~i~~~~~ 325 (543)
T 1nir_A 294 FIVNVK------------------------------------------------ETGKVLLVNYKDIDNLTVTSIGAAPF 325 (543)
T ss_dssp EEEEET------------------------------------------------TTTEEEEEECTTSSSCEEEEEECCSS
T ss_pred EEEEEC------------------------------------------------CCCeEEEEEecCCCcceeEEeccCcC
Confidence 776510 3357889998 5432 23333356
Q ss_pred ccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceee-ccCCCC
Q 002209 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINW-RSDKPS 412 (953)
Q Consensus 334 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~w-spDg~~ 412 (953)
...+.|||||++++.+... .+.|.+||+.+++........ ..|. .+ +...| +||+..
T Consensus 326 ~~~~~~spdg~~l~va~~~------------~~~v~v~D~~tg~l~~~i~~g---~~ph------~g-~g~~~~~p~~g~ 383 (543)
T 1nir_A 326 LHDGGWDSSHRYFMTAANN------------SNKVAVIDSKDRRLSALVDVG---KTPH------PG-RGANFVHPKYGP 383 (543)
T ss_dssp CCCEEECTTSCEEEEEEGG------------GTEEEEEETTTTEEEEEEECS---SSBC------CT-TCEEEEETTTEE
T ss_pred ccCceECCCCCEEEEEecC------------CCeEEEEECCCCeEEEeeccC---CCCC------CC-CCcccCCCCCcc
Confidence 7788999999998776632 238999999876654322211 0111 00 22334 688655
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEecCCCCC----CC-ceEEeecccccCCeeeccCCceEEEEEeccc---CceEEE
Q 002209 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG----EG-PEILHKLDLRYGGISWCDDSLALVYESWYKT---RRTRTW 484 (953)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g----~~-~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~~l~ 484 (953)
++.. .. ...+.|.+|+.++... .+ .+.+..+......+.++|||++|+.....+. ....|.
T Consensus 384 ~~~s-~~----------~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 384 VWST-SH----------LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp EEEE-EB----------SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEE
T ss_pred EEEe-cc----------CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEE
Confidence 4332 11 1245788888622111 22 2334333344566899999999987652111 122688
Q ss_pred EEcCCCCCCCcEEeec-------CCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEE
Q 002209 485 VISPGSKDVAPRILFD-------RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLF 557 (953)
Q Consensus 485 ~~d~~~~~~~~~~~~~-------~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 557 (953)
++|.++++.....+.- .....+.. +.|+|||++|++...... . ....|.+|
T Consensus 453 v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~g~~~~~s~~~~~-------------~---~~~~i~v~ 510 (543)
T 1nir_A 453 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ------PEYNKRGDEVWFSVWNGK-------------N---DSSALVVV 510 (543)
T ss_dssp EEETTCTTSCCEEECHHHHHCCCSSCCEEEE------EEECSSSSEEEEEEECCT-------------T---SCCEEEEE
T ss_pred EEECCCCCCCeEEeechhhcccCCCCCceEe------ccCCCCCCEEEEEeecCC-------------C---CCCeEEEE
Confidence 8888876422133210 11111111 789999999998864210 0 12348999
Q ss_pred ECCCCceEEEecc
Q 002209 558 DINTGSKERIWES 570 (953)
Q Consensus 558 d~~~~~~~~l~~~ 570 (953)
|.+|++.......
T Consensus 511 D~~t~~~~~~i~~ 523 (543)
T 1nir_A 511 DDKTLKLKAVVKD 523 (543)
T ss_dssp ETTTTEEEEEECC
T ss_pred ECCCceEEEeecC
Confidence 9999988766553
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.6e-13 Score=140.38 Aligned_cols=255 Identities=11% Similarity=0.074 Sum_probs=173.7
Q ss_pred eecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCcccce
Q 002209 115 SFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFV 194 (953)
Q Consensus 115 ~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~ 194 (953)
-|+.||++|.|.... . . ..||..+. +| ...++|+. ...-
T Consensus 20 ~~~~~g~~iy~~n~~-----------------------d--~------~~ly~~~~--dg--~~~~~l~~------~~~~ 58 (302)
T 3s25_A 20 LFCESDGEVFFSNTN-----------------------D--N------GRLYAMNI--DG--SNIHKLSN------DTAM 58 (302)
T ss_dssp CEEEETTEEEEEEGG-----------------------G--T------TEEEEEET--TS--CSCEEEEE------EEEE
T ss_pred EEEEeCCEEEEEeCC-----------------------C--C------ceEEEEcC--CC--CCCEEccC------Ccee
Confidence 478999999998752 1 1 25777776 55 44666653 1234
Q ss_pred EeccCCCeEEEEEeeccccCC-----CCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 195 TWSQDGKHLAFSIRIDAEDSS-----SSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 195 ~wSPDG~~laf~~~~~~~~~~-----~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
-+++||++|+|+......... .....||+++++|++.++|+... ...|+++|++|+|+...
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~---------~~~~s~~g~~Iy~~~~~----- 124 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP---------CIYASLIGNYIYYLHYD----- 124 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC---------EEEEEEETTEEEEEEES-----
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC---------ccEEEEeCCEEEEEeec-----
Confidence 568999999998764310000 12578999999999888886533 23689999999998100
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCC-ceeEeCCCCcccccccCCCCcEEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEIGPPAVYTSLDPSPDEKYILI 348 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g-~~~~l~~~~~~~~~~~SpDG~~l~~ 348 (953)
.+ +...|++++++| ..++|+.... ..++|||++|+|
T Consensus 125 ---------------------------------~~-------~~~~Iy~~~~dGs~~~~lt~~~~---~~~~~~g~~iy~ 161 (302)
T 3s25_A 125 ---------------------------------TQ-------TATSLYRIRIDGEEKKKIKNHYL---FTCNTSDRYFYY 161 (302)
T ss_dssp ---------------------------------SS-------SCEEEEEEETTSCCCEEEESSCC---CCSEEETTEEEE
T ss_pred ---------------------------------CC-------CCceEEEEECCCCCeEEEeCCCc---eEeeEECCEEEE
Confidence 00 346899999944 6677776522 567999999999
Q ss_pred EEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (953)
+... ...|++.+++|+..+.|...+ ....++|+|+.|+|. +..
T Consensus 162 t~~g------------~~~Iy~~~l~g~~~~~l~~~~----------------~~~~~~P~g~~iy~t-~~~-------- 204 (302)
T 3s25_A 162 NNPK------------NGQLYRYDTASQSEALFYDCN----------------CYKPVVLDDTNVYYM-DVN-------- 204 (302)
T ss_dssp ECTT------------TCCEEEEETTTTEEEEEECSC----------------EEEEEEEETTEEEEE-EGG--------
T ss_pred EeCC------------CceEEEEECCCCCEEEEeCCC----------------ccceeeecCCEEEEE-EcC--------
Confidence 9741 238999999998888775421 112355999988665 221
Q ss_pred cccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccC
Q 002209 429 VTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYS 508 (953)
Q Consensus 429 ~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 508 (953)
....|++.++ +|+..+.|+.... +.|+|+|++|+|...... ..|+.+++++. ..+.+.....
T Consensus 205 --~~~~I~~~~l---dG~~~~~Lt~~~~----~~~~~~g~~Iy~~~~~~~--~~i~~~~~DG~--~r~~l~~~~~----- 266 (302)
T 3s25_A 205 --RDNAIVHVNI---NNPNPVVLTEANI----EHYNVYGSLIFYQRGGDN--PALCVVKNDGT--GFKELAKGEF----- 266 (302)
T ss_dssp --GTTEEEEECS---SSCCCEECSCSCE----EEEEEETTEEEEEECSSS--CEEEEEETTSC--CCEEEEESCE-----
T ss_pred --CCcEEEEEEC---CCCCeEEEeCCCc----ceEEECCCEEEEEECCCC--cEEEEEECCCC--ccEEeeCCcc-----
Confidence 1247999986 8888888865432 569999999998765443 48999999985 4455544321
Q ss_pred CCCCCCeEeccCCCEEEEEe
Q 002209 509 DPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 509 ~~~~p~~~~SpDG~~l~~~~ 528 (953)
..+++.|.+|+|..
T Consensus 267 ------~~i~i~~d~Iy~td 280 (302)
T 3s25_A 267 ------CNINVTSQYVYFTD 280 (302)
T ss_dssp ------EEEEECSSEEEEEE
T ss_pred ------ceEEEeCCEEEEEE
Confidence 34677888888886
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=8.6e-13 Score=144.51 Aligned_cols=257 Identities=13% Similarity=0.116 Sum_probs=153.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++|++...+ + +.|.+|++..++ +..+.+..++...
T Consensus 39 ~~~~~~~spdg~~l~~~~~~------------------------~--------~~v~~~~~~~~~--~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRP------------------------E--------FRVLAYRIAPDD--GALTFAAESALPG 84 (343)
T ss_dssp CCCCEEECTTSSEEEEEETT------------------------T--------TEEEEEEECTTT--CCEEEEEEEECSS
T ss_pred CCceEEECCCCCEEEEeecC------------------------C--------CeEEEEEecCCC--CceeeccccccCC
Confidence 56689999999999888763 0 156888884212 3333333233223
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCC---ceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG---KARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g---~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
.+..++|||||++|++... ....|++++++.+ +.......... +..++|+|||+.|+++..
T Consensus 85 ~~~~~~~s~dg~~l~~~~~--------~~~~i~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~--- 148 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSY--------NAGNVSVTRLEDGLPVGVVDVVEGLDG-----CHSANISPDNRTLWVPAL--- 148 (343)
T ss_dssp CCSEEEECTTSSEEEEEET--------TTTEEEEEEEETTEEEEEEEEECCCTT-----BCCCEECTTSSEEEEEEG---
T ss_pred CCcEEEEcCCCCEEEEEec--------CCCeEEEEECCCCccccccccccCCCC-----ceEEEECCCCCEEEEecC---
Confidence 6788999999999888652 1345666666333 22222222221 568899999998886610
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C-CceeE-----eCC--CCccccc
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D-GTVKE-----IGP--PAVYTSL 337 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~-g~~~~-----l~~--~~~~~~~ 337 (953)
....|+++++ + |+... +.. ......+
T Consensus 149 ---------------------------------------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (343)
T 1ri6_A 149 ---------------------------------------------KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM 183 (343)
T ss_dssp ---------------------------------------------GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE
T ss_pred ---------------------------------------------CCCEEEEEEecCCCceeeecccccccCCCCCcceE
Confidence 2246778887 5 65542 221 1456678
Q ss_pred ccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc--CceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002209 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (953)
Q Consensus 338 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~ 415 (953)
+|+|||++|+++... .+.+.+|+++ ++..+.+..... .+..+.. ...+..++|+|||+.+++
T Consensus 184 ~~~pdg~~l~~~~~~------------~~~i~~~~~~~~~g~~~~~~~~~~---~~~~~~~-~~~~~~i~~s~dg~~l~v 247 (343)
T 1ri6_A 184 VFHPNEQYAYCVNEL------------NSSVDVWELKDPHGNIECVQTLDM---MPENFSD-TRWAADIHITPDGRHLYA 247 (343)
T ss_dssp EECTTSSEEEEEETT------------TTEEEEEESSCTTSCCEEEEEEEC---SCTTCCS-CCCEEEEEECTTSSEEEE
T ss_pred EECCCCCEEEEEeCC------------CCEEEEEEecCCCCcEEEEeeccc---cCccccc-cCCccceEECCCCCEEEE
Confidence 999999998877622 2379999985 333322211110 0100000 012346899999987654
Q ss_pred EEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe--ecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~--~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
. . ...+.+.+|+++ ..++..+.+. ........++|+|||++|+++...+ ....+|.++.+++
T Consensus 248 ~-~-----------~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~~v~v~~~d~~~g 311 (343)
T 1ri6_A 248 C-D-----------RTASLITVFSVS-EDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS-HHISVYEIVGEQG 311 (343)
T ss_dssp E-E-----------TTTTEEEEEEEC-TTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT-CEEEEEEEETTTT
T ss_pred E-e-----------cCCCEEEEEEEc-CCCCceEEeeeecCCCccceEEECCCCCEEEEecCCC-CeEEEEEEcCCCc
Confidence 4 1 224578888861 1134444432 2233467899999999988876433 3357888888775
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=151.67 Aligned_cols=176 Identities=19% Similarity=0.170 Sum_probs=117.1
Q ss_pred HHHHHHHcCcEEEEcCCCCCCCCCChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC
Q 002209 704 SVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP 781 (953)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p 781 (953)
....|+++||.|++ +|.+|+|.+.... .......+|+.++++.+ +.+++.|+||||||.+++.++.++|
T Consensus 42 ~~~~L~~~g~~vi~---~D~~G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p 112 (279)
T 1hkh_A 42 QTRELLAQGYRVIT---YDRRGFGGSSKVNTGYDYDTFAADLHTVLETL------DLRDVVLVGFSMGTGELARYVARYG 112 (279)
T ss_dssp HHHHHHHTTEEEEE---ECCTTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHHC
T ss_pred hHHHHHhCCcEEEE---eCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhc------CCCceEEEEeChhHHHHHHHHHHcC
Confidence 45567889999999 4556778775432 23566778888887775 2358999999999999999999999
Q ss_pred C-cccEEEEcccCCCCCCC----CcCcccc-----------cc-hhh--------h---------hH---HHHH------
Q 002209 782 H-LFCCGIARSGAYNRTLT----PFGFQNE-----------DR-TLW--------E---------AT---STYV------ 818 (953)
Q Consensus 782 ~-~~~a~v~~~~~~d~~~~----~~~~~~~-----------~~-~~~--------~---------~~---~~~~------ 818 (953)
+ +++++|++++....... ....... .. ..+ . .. +.+.
T Consensus 113 ~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (279)
T 1hkh_A 113 HERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYNLDENLGSRISEQAVTGSWNVAIGS 192 (279)
T ss_dssp STTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHBTTTBCHHHHHHHHHHHHTS
T ss_pred ccceeeEEEEccCCcccccCcCCcCCCcHHHHHHHHHHhhhhhhhhHHHHHhhhhhcccCCcccccHHHHHhhhhhhccC
Confidence 8 99999999874321110 0000000 00 000 0 00 0000
Q ss_pred ------------hcCcccccCCC---CCcEEEEEeCCCCCCCCchHHH-HHHHHHHHhCCCcEEEEEeCCCCccCCCccc
Q 002209 819 ------------EMSPFMSANKL---KKPILLVHGEEDNNSGTLTMQS-DRFFNALKGHGALCRLVILPFESHGYAARES 882 (953)
Q Consensus 819 ------------~~sp~~~~~~i---~~P~Li~~G~~D~~v~~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 882 (953)
..+....+.++ ++|+|++||++|..+| ++.+ ..+.+.+.. .++++++++||... .++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~i~~~~~P~lii~G~~D~~~~--~~~~~~~~~~~~~~----~~~~~i~~~gH~~~-~e~ 265 (279)
T 1hkh_A 193 APVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILP--IDATARRFHQAVPE----ADYVEVEGAPHGLL-WTH 265 (279)
T ss_dssp CTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSC--TTTTHHHHHHHCTT----SEEEEETTCCTTHH-HHT
T ss_pred cHHHHHHHHHHHhhchhhhHHHhccCCCCEEEEEcCCCccCC--hHHHHHHHHHhCCC----eeEEEeCCCCccch-hcC
Confidence 00111234556 8999999999999998 7776 666665533 58899999999863 456
Q ss_pred HHHHHHHHHHHHH
Q 002209 883 IMHVLWETDRWLQ 895 (953)
Q Consensus 883 ~~~~~~~i~~fl~ 895 (953)
.+.+.+.+.+||.
T Consensus 266 p~~~~~~i~~fl~ 278 (279)
T 1hkh_A 266 ADEVNAALKTFLA 278 (279)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 7788888888875
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-12 Score=144.51 Aligned_cols=268 Identities=10% Similarity=0.105 Sum_probs=164.0
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+....|+|||++|+..+ ....|.++|..+++.......+... +..++|+|||+.|+...
T Consensus 65 ~~V~~~~~s~d~~~l~s~s---------~Dg~v~vWd~~~~~~~~~~~~~~~~----v~~~~~sp~g~~lasg~------ 125 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSS---------QDGKVIVWDSFTTNKEHAVTMPCTW----VMACAYAPSGCAIACGG------ 125 (354)
T ss_dssp SCEEEEEECTTSSEEEEEE---------TTSEEEEEETTTCCEEEEEECSSSC----CCEEEECTTSSEEEEES------
T ss_pred CeEEEEEECCCCCEEEEEe---------CCCeEEEEECCCCCcceEEecCCCC----EEEEEECCCCCEEEEee------
Confidence 4689999999999988755 2567888898877654433333322 67899999999998761
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-------ceeEeCCC-Cccccccc
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-------TVKEIGPP-AVYTSLDP 339 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-------~~~~l~~~-~~~~~~~~ 339 (953)
..+.+.++++ .+ ....+... ..+..+.|
T Consensus 126 -------------------------------------------~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 162 (354)
T 2pbi_B 126 -------------------------------------------LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF 162 (354)
T ss_dssp -------------------------------------------TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEE
T ss_pred -------------------------------------------CCCCEEEEEEeccccccccccceeeeccCCcEEEEEE
Confidence 1122333333 11 12222222 56778999
Q ss_pred CCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeecc--CCCCceEE
Q 002209 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRS--DKPSTLYW 416 (953)
Q Consensus 340 SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wsp--Dg~~i~~~ 416 (953)
+||++.|+..+.+. .|.+||++.++ .+.+..+. ..+..+.|+| +|+.++..
T Consensus 163 ~~~~~~l~t~s~D~-------------~v~lwd~~~~~~~~~~~~h~-------------~~v~~~~~~~~~~g~~l~sg 216 (354)
T 2pbi_B 163 TNSDMQILTASGDG-------------TCALWDVESGQLLQSFHGHG-------------ADVLCLDLAPSETGNTFVSG 216 (354)
T ss_dssp CSSSSEEEEEETTS-------------EEEEEETTTCCEEEEEECCS-------------SCEEEEEECCCSSCCEEEEE
T ss_pred eCCCCEEEEEeCCC-------------cEEEEeCCCCeEEEEEcCCC-------------CCeEEEEEEeCCCCCEEEEE
Confidence 99999999887443 89999998554 33443322 2234567776 45554443
Q ss_pred EEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcE
Q 002209 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (953)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (953)
+..+.+.+||+ .++.....+..+...+..++|+|+|+.|+..+.++ .+.++|+.++ ...
T Consensus 217 -------------s~Dg~v~~wd~--~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~----~v~lwd~~~~--~~~ 275 (354)
T 2pbi_B 217 -------------GCDKKAMVWDM--RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDA----TCRLYDLRAD--REV 275 (354)
T ss_dssp -------------ETTSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTTT--EEE
T ss_pred -------------eCCCeEEEEEC--CCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCC----eEEEEECCCC--cEE
Confidence 34568999996 23332334555667788899999999988876554 2444455443 222
Q ss_pred EeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccce
Q 002209 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYY 576 (953)
Q Consensus 497 ~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~ 576 (953)
......... . +...+.|+|||++|+....+ ..+++||+.+++..........
T Consensus 276 ~~~~~~~~~-~---~~~~~~~s~~g~~l~~g~~d---------------------~~i~vwd~~~~~~~~~l~~h~~--- 327 (354)
T 2pbi_B 276 AIYSKESII-F---GASSVDFSLSGRLLFAGYND---------------------YTINVWDVLKGSRVSILFGHEN--- 327 (354)
T ss_dssp EEECCTTCC-S---CEEEEEECTTSSEEEEEETT---------------------SCEEEEETTTCSEEEEECCCSS---
T ss_pred EEEcCCCcc-c---ceeEEEEeCCCCEEEEEECC---------------------CcEEEEECCCCceEEEEECCCC---
Confidence 222211100 0 00117899999998877632 2499999987765443332211
Q ss_pred eeeEeeccCCccccccccCCEEEEE
Q 002209 577 ETTVALMSDQTEGDLYLNQLKILTS 601 (953)
Q Consensus 577 ~~~~~~~~~~~~~~~s~dg~~l~~~ 601 (953)
.+. ..+|+|||+.++..
T Consensus 328 -~v~-------~l~~spdg~~l~sg 344 (354)
T 2pbi_B 328 -RVS-------TLRVSPDGTAFCSG 344 (354)
T ss_dssp -CEE-------EEEECTTSSCEEEE
T ss_pred -cEE-------EEEECCCCCEEEEE
Confidence 122 24689999876643
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8.9e-15 Score=155.88 Aligned_cols=190 Identities=13% Similarity=0.041 Sum_probs=126.3
Q ss_pred cCCCCCCcEEEEEeChHHHHHHHHHHhCCCccc-EEEEcccCCCCCCCC---cCcccc---cchhhhhHHHHHhcCcccc
Q 002209 753 RGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC-CGIARSGAYNRTLTP---FGFQNE---DRTLWEATSTYVEMSPFMS 825 (953)
Q Consensus 753 ~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~-a~v~~~~~~d~~~~~---~~~~~~---~~~~~~~~~~~~~~sp~~~ 825 (953)
+..+|++||+|+|+|+||+||+.+++.+|++|+ +++++++........ ..+... ....++........+++..
T Consensus 5 ~~~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 84 (318)
T 2d81_A 5 AFNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTPTANMKSWSGNQIAS 84 (318)
T ss_dssp CCCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSCGGGGSTTCCCCCHHHHHHHHHHBTTTBCC
T ss_pred hcCcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEecccccccchHHHHHHhhccCCCCCCHHHHHHHhhcccCCh
Confidence 345899999999999999999999999999999 887776532111100 000000 0011111111111146666
Q ss_pred cCCCC-CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCC--cEEEEEeCCCCccCCCccc------------------HH
Q 002209 826 ANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA--LCRLVILPFESHGYAARES------------------IM 884 (953)
Q Consensus 826 ~~~i~-~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~--~~~~~~~~~~~H~~~~~~~------------------~~ 884 (953)
+.+++ .|+||+||++|.+|| +.++++++++|++.+. +++++.+++++|.+..... ..
T Consensus 85 ~~~l~~~Pvli~HG~~D~vVP--~~~s~~~~~~L~~~g~~~~ve~~~~~g~gH~~~~~~~~~~~~~c~~~~~pyi~~~~~ 162 (318)
T 2d81_A 85 VANLGQRKIYMWTGSSDTTVG--PNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTSPYISNCNY 162 (318)
T ss_dssp GGGGGGCEEEEEEETTCCSSC--HHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCTTCEEECSS
T ss_pred hHcCCCCcEEEEeCCCCCCcC--HHHHHHHHHHHHhcCCCcceEEEEeCCCCCCCccCCcccCccccccCCCCcccCCCC
Confidence 66654 599999999999999 9999999999998873 7999999999998642221 14
Q ss_pred HHHHHHHHHHHHhccCCCC-CCCcc---cccC-cccccCCCCCCCCceEEccCCCCc-cc-ceeeeeecc
Q 002209 885 HVLWETDRWLQKYCVSNTA-DRSTD---LKVS-KDDESKGAPHLQNKTVAASGGGGT-EA-DFEHDGCHL 947 (953)
Q Consensus 885 ~~~~~i~~fl~~~l~~~~~-~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~ 947 (953)
.....|++||...+.+... ..... ++|. .+ ..........++++.+|.. .. |..|+++|-
T Consensus 163 d~~~~i~~ff~g~~~~~~~~~~~~~~~~~~q~~~f---~~~~~~~~~~~yvP~~~~~~~~~~~l~v~lHG 229 (318)
T 2d81_A 163 DGAGAALKWIYGSLNARNTGTLSGSVLSFAQSGSY---GANGMDTTGYLYVPQSCASGATVCSLHVALHG 229 (318)
T ss_dssp CHHHHHHHHHHSSCCCCCCSSCSSEEEEEECCGGG---CCTTBCSEEEEEECHHHHSSSSCEEEEEEECC
T ss_pred hHHHHHHHHHhccCCCCccccccccccccccccCc---CCCCCCcceEEEecCCCCCCCCCCCEEEEecC
Confidence 5677899999887654322 12211 3333 12 1123445566889988864 44 889999995
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=153.12 Aligned_cols=220 Identities=10% Similarity=0.072 Sum_probs=133.5
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEc
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (953)
.+...++..+| .+..+...+ ..|+||++||..... ..| ......|+++||.|+++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~---------~~~~vv~lHG~~~~~-----------~~~----~~~~~~l~~~g~~v~~~ 57 (279)
T 4g9e_A 3 INYHELETSHG-RIAVRESEG---------EGAPLLMIHGNSSSG-----------AIF----APQLEGEIGKKWRVIAP 57 (279)
T ss_dssp CEEEEEEETTE-EEEEEECCC---------CEEEEEEECCTTCCG-----------GGG----HHHHHSHHHHHEEEEEE
T ss_pred eEEEEEEcCCc-eEEEEecCC---------CCCeEEEECCCCCch-----------hHH----HHHHhHHHhcCCeEEee
Confidence 34555666555 554433211 267899999963211 111 23344557789999995
Q ss_pred CCCCCCCCCChhhh-----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 719 PTTPIIGEGDEEAN-----DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 719 ~~~~~~G~G~~~~~-----~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
| .+|+|.+... .........|+.++++.+ +.+++.|+|||+||.+++.++.++|+ +.++|+.++.
T Consensus 58 d---~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~-~~~~vl~~~~ 127 (279)
T 4g9e_A 58 D---LPGHGKSTDAIDPDRSYSMEGYADAMTEVMQQL------GIADAVVFGWSLGGHIGIEMIARYPE-MRGLMITGTP 127 (279)
T ss_dssp C---CTTSTTSCCCSCHHHHSSHHHHHHHHHHHHHHH------TCCCCEEEEETHHHHHHHHHTTTCTT-CCEEEEESCC
T ss_pred c---CCCCCCCCCCCCcccCCCHHHHHHHHHHHHHHh------CCCceEEEEECchHHHHHHHHhhCCc-ceeEEEecCC
Confidence 4 4677777542 112455566666665554 23589999999999999999999998 6666666554
Q ss_pred CCCCCC---------CcCccccc-------------------chhh-hh------------HHHHHh---cCcccccCCC
Q 002209 794 YNRTLT---------PFGFQNED-------------------RTLW-EA------------TSTYVE---MSPFMSANKL 829 (953)
Q Consensus 794 ~d~~~~---------~~~~~~~~-------------------~~~~-~~------------~~~~~~---~sp~~~~~~i 829 (953)
...... ........ ...+ .. ...+.. .+....+.++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 207 (279)
T 4g9e_A 128 PVAREEVGQGFKSGPDMALAGQEIFSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAEA 207 (279)
T ss_dssp CCCGGGHHHHBCCSTTGGGGGCSCCCHHHHHHHHHHHHCSSCCHHHHHHHHHSCHHHHHHHHHHHHHTCBCCHHHHHHHC
T ss_pred CCCCCccchhhccchhhhhcCcccccHHHHHHHHHhhccCcccHHHHHHHHhhhccchHHHHHHhhccCCchHHHHHHhc
Confidence 221100 00000000 0000 00 000000 1112235668
Q ss_pred CCcEEEEEeCCCCCCCCchHHHHHHH-HHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccC
Q 002209 830 KKPILLVHGEEDNNSGTLTMQSDRFF-NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 830 ~~P~Li~~G~~D~~v~~~~~~~~~~~-~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (953)
++|+|+++|++|..+| ++.+.+++ +.+. .+++++++++||.. ..+....+.+.+.+||.+....
T Consensus 208 ~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~----~~~~~~~~~~gH~~-~~~~p~~~~~~i~~fl~~~~~~ 272 (279)
T 4g9e_A 208 QLPIAVVNGRDEPFVE--LDFVSKVKFGNLW----EGKTHVIDNAGHAP-FREAPAEFDAYLARFIRDCTQL 272 (279)
T ss_dssp CSCEEEEEETTCSSBC--HHHHTTCCCSSBG----GGSCEEETTCCSCH-HHHSHHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEEcCCCcccc--hHHHHHHhhccCC----CCeEEEECCCCcch-HHhCHHHHHHHHHHHHHHhhhh
Confidence 8999999999999998 77776665 3322 35788999999985 3566788889999999987643
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=153.05 Aligned_cols=211 Identities=12% Similarity=0.113 Sum_probs=135.9
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEEcCCCCCCCC
Q 002209 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGE 726 (953)
Q Consensus 648 dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~ 726 (953)
+|..++....- +.|+||++||.+... ..| ......|++ +||.|+++ +.+|+
T Consensus 9 ~g~~l~y~~~g----------~~~~vv~lhG~~~~~-----------~~~----~~~~~~l~~~~g~~v~~~---d~~G~ 60 (272)
T 3fsg_A 9 TRSNISYFSIG----------SGTPIIFLHGLSLDK-----------QST----CLFFEPLSNVGQYQRIYL---DLPGM 60 (272)
T ss_dssp CTTCCEEEEEC----------CSSEEEEECCTTCCH-----------HHH----HHHHTTSTTSTTSEEEEE---CCTTS
T ss_pred cCCeEEEEEcC----------CCCeEEEEeCCCCcH-----------HHH----HHHHHHHhccCceEEEEe---cCCCC
Confidence 66666654431 146799999953110 001 112223444 69999995 44677
Q ss_pred CChhhhh-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCc----
Q 002209 727 GDEEAND-RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF---- 801 (953)
Q Consensus 727 G~~~~~~-~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~---- 801 (953)
|.+.... ......+.|+.++++.+. +.+++.|+||||||.+++.++.++|++++++|+++|.........
T Consensus 61 G~s~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 135 (272)
T 3fsg_A 61 GNSDPISPSTSDNVLETLIEAIEEII-----GARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGK 135 (272)
T ss_dssp TTCCCCSSCSHHHHHHHHHHHHHHHH-----TTCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHh-----CCCcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCcccccccc
Confidence 7765433 345667778777777742 236899999999999999999999999999999998753211000
Q ss_pred -------Cccc----cc------------chhhhhH-------------HHHHh---c-----CcccccCCCCCcEEEEE
Q 002209 802 -------GFQN----ED------------RTLWEAT-------------STYVE---M-----SPFMSANKLKKPILLVH 837 (953)
Q Consensus 802 -------~~~~----~~------------~~~~~~~-------------~~~~~---~-----sp~~~~~~i~~P~Li~~ 837 (953)
.+.. .. ...+... ..+.. . .+...+.++++|+|+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~ 215 (272)
T 3fsg_A 136 HINILEEDINPVENKEYFADFLSMNVIINNQAWHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQFPFKIMV 215 (272)
T ss_dssp CCCEECSCCCCCTTGGGHHHHHHHCSEESHHHHHHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTCCCSSCEEEEE
T ss_pred chhhhhhhhhcccCHHHHHHHHHHhccCCCchhHHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhccCCCCEEEEE
Confidence 0000 00 0000000 00000 0 00113467899999999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
|++|..+| ++.+.++.+.+. .+++++++++||... .+..+.+.+.+.+||++..
T Consensus 216 g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~~~~ 269 (272)
T 3fsg_A 216 GRNDQVVG--YQEQLKLINHNE----NGEIVLLNRTGHNLM-IDQREAVGFHFDLFLDELN 269 (272)
T ss_dssp ETTCTTTC--SHHHHHHHTTCT----TEEEEEESSCCSSHH-HHTHHHHHHHHHHHHHHHH
T ss_pred eCCCCcCC--HHHHHHHHHhcC----CCeEEEecCCCCCch-hcCHHHHHHHHHHHHHHhh
Confidence 99999998 888877766553 479999999999864 4567788889999998754
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-14 Score=157.02 Aligned_cols=71 Identities=10% Similarity=0.116 Sum_probs=60.1
Q ss_pred ccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC-CCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF-ESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 825 ~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
.+.++++|+|+++|++|..+| +..++++++.+++.+..++++++++ +||... .+..+.+.+.+.+||++++
T Consensus 302 ~l~~i~~Pvlii~G~~D~~~~--~~~~~~~~~~~~~~g~~~~~~~i~~~~gH~~~-~e~p~~~~~~i~~fl~~~~ 373 (377)
T 3i1i_A 302 ALSNVEANVLMIPCKQDLLQP--SRYNYKMVDLLQKQGKYAEVYEIESINGHMAG-VFDIHLFEKKVYEFLNRKV 373 (377)
T ss_dssp HHHTCCSEEEEECBTTCSSSC--THHHHHHHHHHHHTTCCEEECCBCCTTGGGHH-HHCGGGTHHHHHHHHHSCC
T ss_pred HHhhCCCCEEEEecCCccccC--HHHHHHHHHHHHhcCCCceEEEcCCCCCCcch-hcCHHHHHHHHHHHHHhhh
Confidence 456789999999999999998 9999999999988777789999998 999753 3455678888999998765
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-14 Score=150.75 Aligned_cols=216 Identities=16% Similarity=0.105 Sum_probs=133.2
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
+...+|..++....-++ ..|+||++||..... .....|. .....|+ ++|.|+++ |.
T Consensus 11 ~~~~~g~~l~y~~~g~~--------g~p~vvllHG~~~~~-----------~~~~~~~-~~~~~L~-~~~~vi~~---D~ 66 (285)
T 1c4x_A 11 RFPSGTLASHALVAGDP--------QSPAVVLLHGAGPGA-----------HAASNWR-PIIPDLA-ENFFVVAP---DL 66 (285)
T ss_dssp EECCTTSCEEEEEESCT--------TSCEEEEECCCSTTC-----------CHHHHHG-GGHHHHH-TTSEEEEE---CC
T ss_pred EEEECCEEEEEEecCCC--------CCCEEEEEeCCCCCC-----------cchhhHH-HHHHHHh-hCcEEEEe---cC
Confidence 34457777776554211 147799999952000 0011111 1233444 45999994 55
Q ss_pred CCCCChhhhh---hhHHHH----HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC
Q 002209 724 IGEGDEEAND---RFVEQL----VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (953)
Q Consensus 724 ~G~G~~~~~~---~~~~~~----~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~ 796 (953)
+|+|.+.... ...... ++|+.+.++.+ +.+++.|+||||||.+++.++.++|++++++|++++....
T Consensus 67 ~G~G~S~~~~~~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~ 140 (285)
T 1c4x_A 67 IGFGQSEYPETYPGHIMSWVGMRVEQILGLMNHF------GIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAP 140 (285)
T ss_dssp TTSTTSCCCSSCCSSHHHHHHHHHHHHHHHHHHH------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSC
T ss_pred CCCCCCCCCCCcccchhhhhhhHHHHHHHHHHHh------CCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCC
Confidence 6777774432 224444 66666666554 2358999999999999999999999999999999875421
Q ss_pred CCC--C-----cCc-----------------ccccc-----h----hhh---hHHH---HHh-----c-------Ccccc
Q 002209 797 TLT--P-----FGF-----------------QNEDR-----T----LWE---ATST---YVE-----M-------SPFMS 825 (953)
Q Consensus 797 ~~~--~-----~~~-----------------~~~~~-----~----~~~---~~~~---~~~-----~-------sp~~~ 825 (953)
... . ..+ ..... . .+. .+.. +.. . .....
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (285)
T 1c4x_A 141 MNARPPELARLLAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPAT 220 (285)
T ss_dssp CSSCCHHHHHHHTGGGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHH
T ss_pred CCccchhHHHHHHHhccccHHHHHHHHHHhhcCcccccCcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhh
Confidence 100 0 000 00000 0 000 0000 000 0 01234
Q ss_pred cCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 826 ~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
+.++++|+|+++|++|..+| +..++++++.+. ..++++++++||... .+..+.+.+.+.+||.+
T Consensus 221 l~~i~~P~lii~G~~D~~~p--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 284 (285)
T 1c4x_A 221 LGRLPHDVLVFHGRQDRIVP--LDTSLYLTKHLK----HAELVVLDRCGHWAQ-LERWDAMGPMLMEHFRA 284 (285)
T ss_dssp HTTCCSCEEEEEETTCSSSC--THHHHHHHHHCS----SEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHC
T ss_pred hccCCCCEEEEEeCCCeeeC--HHHHHHHHHhCC----CceEEEeCCCCcchh-hcCHHHHHHHHHHHHhc
Confidence 57789999999999999998 888888777653 368999999999763 45667788888888863
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-14 Score=141.37 Aligned_cols=184 Identities=9% Similarity=-0.105 Sum_probs=114.7
Q ss_pred CccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHc-CcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHH
Q 002209 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAV 747 (953)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~ 747 (953)
+.|+||++||+..... ....+.......|+++ ||.|+.+|++ |.+.. ... ..+
T Consensus 3 ~~p~vv~lHG~~~~~~-----------~~~~~~~~~~~~l~~~~g~~vi~~d~~---g~~~~--------~~~----~~~ 56 (194)
T 2qs9_A 3 SPSKAVIVPGNGGGDV-----------TTHGWYGWVKKELEKIPGFQCLAKNMP---DPITA--------RES----IWL 56 (194)
T ss_dssp CCCEEEEECCSSSSCT-----------TTSTTHHHHHHHHTTSTTCCEEECCCS---STTTC--------CHH----HHH
T ss_pred CCCEEEEECCCCCCCc-----------ccchHHHHHHHHHhhccCceEEEeeCC---CCCcc--------cHH----HHH
Confidence 3689999999632100 0011112234566666 9999996665 43211 112 223
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccC
Q 002209 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSAN 827 (953)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 827 (953)
+.+.+.-.+ .+++.|+||||||.+++.++.++| ++++|+++|......... ......+. .......+.
T Consensus 57 ~~~~~~l~~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~---~~~~~~~~------~~~~~~~~~ 124 (194)
T 2qs9_A 57 PFMETELHC-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLGDEN---ERASGYFT------RPWQWEKIK 124 (194)
T ss_dssp HHHHHTSCC-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTTCHH---HHHTSTTS------SCCCHHHHH
T ss_pred HHHHHHhCc-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccchhh---hHHHhhhc------ccccHHHHH
Confidence 333333222 268999999999999999999998 999999998754211000 00000000 000111223
Q ss_pred CCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 828 ~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
++..|+|+++|++|..+| ++.+.++.+.+ . .++++++++||.+. .+.. +.+..+++||++...
T Consensus 125 ~~~~p~lii~G~~D~~vp--~~~~~~~~~~~-~----~~~~~~~~~gH~~~-~~~p-~~~~~~~~fl~~~~~ 187 (194)
T 2qs9_A 125 ANCPYIVQFGSTDDPFLP--WKEQQEVADRL-E----TKLHKFTDCGHFQN-TEFH-ELITVVKSLLKVPAL 187 (194)
T ss_dssp HHCSEEEEEEETTCSSSC--HHHHHHHHHHH-T----CEEEEESSCTTSCS-SCCH-HHHHHHHHHHTCCCC
T ss_pred hhCCCEEEEEeCCCCcCC--HHHHHHHHHhc-C----CeEEEeCCCCCccc-hhCH-HHHHHHHHHHHhhhh
Confidence 346799999999999998 99999998888 3 38899999999875 3333 455666799887543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.5e-13 Score=151.50 Aligned_cols=192 Identities=11% Similarity=0.045 Sum_probs=124.9
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECC--CCceeeccc---CCCccccccccceEEecCCeEEEEEecC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD--TGKARPLFQ---SPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~--~g~~~~lt~---~~~~~~~~~~~~~~wspDg~~l~~~~~~ 264 (953)
.+..++|||||++|+++.. ....|.++++. +++..+... .+. .+..++|+|||+.|+++.
T Consensus 104 ~v~~~~~s~d~~~l~~~~~--------~dg~v~iwd~~~~~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~~~~-- 168 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACAD--------SDKSLLVFDVDKTSKNVLKLRKRFCFSK-----RPNAISIAEDDTTVIIAD-- 168 (450)
T ss_dssp CEEEEEECTTSSEEEEEEG--------GGTEEEEEEECSSSSSCEEEEEEEECSS-----CEEEEEECTTSSEEEEEE--
T ss_pred ceEEEEEcCCCCEEEEEEC--------CCCeEEEEECcCCCCceeeeeecccCCC-----CceEEEEcCCCCEEEEEe--
Confidence 4788999999999866543 23456666666 665544432 122 166899999999998761
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-----EeCCC-Cccccc
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-----EIGPP-AVYTSL 337 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-----~l~~~-~~~~~~ 337 (953)
..+.++.+++ +++.. .+... ..+..+
T Consensus 169 -----------------------------------------------~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 201 (450)
T 2vdu_B 169 -----------------------------------------------KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDV 201 (450)
T ss_dssp -----------------------------------------------TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEE
T ss_pred -----------------------------------------------CCCcEEEEecCCcccccccceeeecccCceEEE
Confidence 2356788888 66433 22222 677889
Q ss_pred ccCCC---CcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002209 338 DPSPD---EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (953)
Q Consensus 338 ~~SpD---G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i 413 (953)
+|+|| |++|+..+.+ +.|.+||+..+. ...+.. +....+..++|+ ||+.+
T Consensus 202 ~~sp~~~~~~~l~s~~~d-------------~~i~vwd~~~~~~~~~~~~------------~h~~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 202 HLIKDSDGHQFIITSDRD-------------EHIKISHYPQCFIVDKWLF------------GHKHFVSSICCG-KDYLL 255 (450)
T ss_dssp EEEECTTSCEEEEEEETT-------------SCEEEEEESCTTCEEEECC------------CCSSCEEEEEEC-STTEE
T ss_pred EEcCCCCCCcEEEEEcCC-------------CcEEEEECCCCceeeeeec------------CCCCceEEEEEC-CCCEE
Confidence 99999 9888887744 389999998543 333221 111345679999 99877
Q ss_pred eEEEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEEee-------------------------cccccCCeeeccCC
Q 002209 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHK-------------------------LDLRYGGISWCDDS 467 (953)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~-------------------------~~~~~~~~~~SpDg 467 (953)
+.. +..+.|.+||+ ..++. ..+.. ....+..+.|+|||
T Consensus 256 ~s~-------------~~d~~v~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 319 (450)
T 2vdu_B 256 LSA-------------GGDDKIFAWDW---KTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL 319 (450)
T ss_dssp EEE-------------ESSSEEEEEET---TTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred EEE-------------eCCCeEEEEEC---CCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence 665 44568999996 43443 33321 12335568999999
Q ss_pred ceEEEEEecccCceEEEEE
Q 002209 468 LALVYESWYKTRRTRTWVI 486 (953)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~ 486 (953)
+.|++....+ +...+|.+
T Consensus 320 ~~l~~~~~~d-~~i~iw~~ 337 (450)
T 2vdu_B 320 PFVAFFVEAT-KCIIILEM 337 (450)
T ss_dssp SEEEEEETTC-SEEEEEEE
T ss_pred CEEEEEECCC-CeEEEEEe
Confidence 9998876333 32456666
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-12 Score=141.32 Aligned_cols=252 Identities=15% Similarity=0.094 Sum_probs=155.9
Q ss_pred ceEEEEccCCCCCCce-eeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 164 GIGIHQLFPDGKLGQE-IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~-~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
.|+|||+.+ ++. +.+....+...+....|+|||++|+... ....|.++++++++..+......
T Consensus 46 tV~iWd~~t----g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs---------~Dg~v~iw~~~~~~~~~~~~~h~--- 109 (318)
T 4ggc_A 46 SVYLWSASS----GDILQLLQMEQPGEYISSVAWIKEGNYLAVGT---------SSAEVQLWDVQQQKRLRNMTSHS--- 109 (318)
T ss_dssp EEEEEETTT----CCEEEEEECCSTTCCEEEEEECTTSSEEEEEE---------TTSEEEEEETTTTEEEEEEECCS---
T ss_pred EEEEEECCC----CCEEEEEEecCCCCeEEEEEECCCCCEEEEEE---------CCCcEEEeecCCceeEEEecCcc---
Confidence 689999854 333 2333222334688999999999998754 35688889999887654433332
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
.....++++++.++... ....+...+.
T Consensus 110 ---~~~~~~~~~~~~l~s~~-------------------------------------------------~~~~~~~~~~~ 137 (318)
T 4ggc_A 110 ---ARVGSLSWNSYILSSGS-------------------------------------------------RSGHIHHHDVR 137 (318)
T ss_dssp ---SCEEEEEEETTEEEEEE-------------------------------------------------TTSEEEEEETT
T ss_pred ---ceEEEeecCCCEEEEEe-------------------------------------------------cCCceEeeecC
Confidence 22445677777777551 1123334444
Q ss_pred CC--ceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEE--eccCCCcccCCccccc
Q 002209 322 DG--TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE--LCDLPLAEDIPIAFNS 396 (953)
Q Consensus 322 ~g--~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~--l~~~~~~~~~p~~~~~ 396 (953)
.+ ....+... ..+....++++|+.|+....+. .|.+||+..++... +.... .
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-------------~i~iwd~~~~~~~~~~~~~~~----------~ 194 (318)
T 4ggc_A 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN-------------LVNVWPSAPGEGGWVPLQTFT----------Q 194 (318)
T ss_dssp SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-------------CEEEEESSCBTTBSCCSEEEC----------C
T ss_pred CCceeEEEEcCccCceEEEEEcCCCCEEEEEecCc-------------ceeEEECCCCcccccceeeec----------c
Confidence 32 22233333 6677889999999998877443 89999997543211 11100 1
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEec
Q 002209 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 397 ~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
....+..+.|+|++..+++.... +....+.+++. ..............+....|+|+++.++..+..
T Consensus 195 ~~~~v~~~~~~~~~~~~~~~~~~----------~~~~~i~lwd~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~ 261 (318)
T 4ggc_A 195 HQGAVKAVAWCPWQSNVLATGGG----------TSDRHIRIWNV---CSGACLSAVDAHSQVCSILWSPHYKELISGHGF 261 (318)
T ss_dssp CCSCEEEEEECTTSTTEEEEEEC----------TTTCEEEEEET---TTCCEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred cCCceEEEEecCCCCcEEEEEec----------CCCCEEEEEec---ccccccccccceeeeeeeeecccccceEEEEEc
Confidence 11234568899999887765221 23456888885 444444444555566778999999998877643
Q ss_pred ccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 477 KTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 477 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
..+ .|+++|..++ +.......+...+.. ++|||||++|+....
T Consensus 262 ~d~--~i~iwd~~~~--~~~~~l~gH~~~V~~------l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 262 AQN--QLVIWKYPTM--AKVAELKGHTSRVLS------LTMSPDGATVASAAA 304 (318)
T ss_dssp TTC--CEEEEETTTC--CEEEEECCCSSCEEE------EEECTTSSCEEEEET
T ss_pred CCC--EEEEEECCCC--cEEEEEcCCCCCEEE------EEEcCCCCEEEEEec
Confidence 323 4666677764 344444444444444 889999999987763
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-12 Score=144.03 Aligned_cols=298 Identities=9% Similarity=0.043 Sum_probs=172.9
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+....|||||++|+..+ ....|.+||+.+++........... +..++|+|||+.|+....
T Consensus 67 ~~V~~~~~sp~~~~l~s~s---------~D~~v~iWd~~~~~~~~~~~~h~~~----v~~~~~s~~g~~las~~~----- 128 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSAS---------QDGRLIVWNALTSQKTHAIKLHCPW----VMECAFAPNGQSVACGGL----- 128 (380)
T ss_dssp SCEEEEEECTTSSCEEEEE---------TTSEEEEEETTTTEEEEEEECCCTT----CCCCEECTTSSEEEECCS-----
T ss_pred cEEEEEEEcCCCCEEEEEe---------CCCeEEEEECCCCccceEEecCCCC----EEEEEECCCCCEEEEeeC-----
Confidence 4689999999999998855 2568888999887654433323222 678999999999986511
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC--------ceeEeCCC-Ccccccc
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--------TVKEIGPP-AVYTSLD 338 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g--------~~~~l~~~-~~~~~~~ 338 (953)
.+.+.++++ ++ ..+.+... +.+....
T Consensus 129 --------------------------------------------d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~ 164 (380)
T 3iz6_a 129 --------------------------------------------DSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ 164 (380)
T ss_dssp --------------------------------------------SSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCB
T ss_pred --------------------------------------------CCcEEEEECCCCccccCCccceeeccCCCcceEEEE
Confidence 112223343 21 11223333 6678889
Q ss_pred cCCCCcE-EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeecc-CCCCceEE
Q 002209 339 PSPDEKY-ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS-DKPSTLYW 416 (953)
Q Consensus 339 ~SpDG~~-l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wsp-Dg~~i~~~ 416 (953)
|+|++.. |+..+.+ +.|.+||+..+........... .+....+..+.|++ |++.++..
T Consensus 165 ~~~~~~~~l~s~s~D-------------~~i~~wd~~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~l~sg 224 (380)
T 3iz6_a 165 YVPDQETRLITGSGD-------------QTCVLWDVTTGQRISIFGSEFP-------SGHTADVLSLSINSLNANMFISG 224 (380)
T ss_dssp CCSSSSSCEEEECTT-------------SCEEEECTTTCCEEEEECCCSS-------SSCCSCEEEEEECSSSCCEEEEE
T ss_pred EecCCCCEEEEECCC-------------CcEEEEEcCCCcEEEEeecccC-------CCCccCeEEEEeecCCCCEEEEE
Confidence 9998654 5544423 4899999986544332211100 01223345678876 66644443
Q ss_pred EEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcE
Q 002209 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (953)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (953)
+..+.+.+||+ ...+.....+..+...+..++|+|||+.|+..+.++ .+.++|+.++ ...
T Consensus 225 -------------s~D~~v~~wd~-~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~----~i~lwd~~~~--~~~ 284 (380)
T 3iz6_a 225 -------------SCDTTVRLWDL-RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG----TCRLFDMRTG--HQL 284 (380)
T ss_dssp -------------ETTSCEEEEET-TTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSS----CEEEEETTTT--EEE
T ss_pred -------------ECCCeEEEEEC-CCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCC----eEEEEECCCC--cEE
Confidence 44567899996 112233455666777889999999999988876554 3445566553 222
Q ss_pred EeecCCCcccc-CCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccc
Q 002209 497 ILFDRSSEDVY-SDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKY 575 (953)
Q Consensus 497 ~~~~~~~~~~~-~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~ 575 (953)
........... ..+.--.+.|+|+|++|+....+ ..+++||+.+++.......-..
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---------------------g~i~vwd~~~~~~~~~~~~~~~-- 341 (380)
T 3iz6_a 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN---------------------GDCYVWDTLLAEMVLNLGTLQN-- 341 (380)
T ss_dssp EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT---------------------SCEEEEETTTCCEEEEECCSCS--
T ss_pred EEecccccccccccCceEEEEECCCCCEEEEEECC---------------------CCEEEEECCCCceEEEEecccC--
Confidence 22222111000 00001127899999998876532 2499999987765433211000
Q ss_pred eeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCC
Q 002209 576 YETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (953)
Q Consensus 576 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~ 620 (953)
... ..-...+|+|||+.++. .+.. ..+.+|++.+.+
T Consensus 342 --~h~---~~v~~l~~s~dg~~l~s-gs~D---~~i~iW~~~~~~ 377 (380)
T 3iz6_a 342 --SHE---GRISCLGLSSDGSALCT-GSWD---KNLKIWAFSGHR 377 (380)
T ss_dssp --SCC---CCCCEEEECSSSSEEEE-ECTT---SCEEEEECCSSS
T ss_pred --CCC---CceEEEEECCCCCEEEE-eeCC---CCEEEEecCCCc
Confidence 000 00112478999997653 3322 358888876553
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8.4e-13 Score=149.58 Aligned_cols=252 Identities=14% Similarity=0.129 Sum_probs=157.5
Q ss_pred ceEEEEccCCCCCCceeeeecCC-CCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFP-DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~-~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
.|+|||+.+ ++...+..+. .+..+..++|||||++||... ....|.++|+++++..+........
T Consensus 126 tV~lWd~~t----g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs---------~Dg~v~iWd~~~~~~~~~~~~h~~~- 191 (420)
T 4gga_A 126 SVYLWSASS----GDILQLLQMEQPGEYISSVAWIKEGNYLAVGT---------SSAEVQLWDVQQQKRLRNMTSHSAR- 191 (420)
T ss_dssp EEEEEETTT----CCEEEEEECCSTTCCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTTEEEEEECCCSSC-
T ss_pred EEEEEECCC----CCEEEEEEecCCCCcEEEEEECCCCCEEEEEE---------CCCeEEEEEcCCCcEEEEEeCCCCc-
Confidence 789999854 3333332222 334789999999999998854 3567888899888765443333221
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
+.. ++.|++.|+... ....++.++.
T Consensus 192 ---v~~--~s~~~~~l~sgs-------------------------------------------------~d~~i~~~d~~ 217 (420)
T 4gga_A 192 ---VGS--LSWNSYILSSGS-------------------------------------------------RSGHIHHHDVR 217 (420)
T ss_dssp ---EEE--EEEETTEEEEEE-------------------------------------------------TTSEEEEEETT
T ss_pred ---eEE--EeeCCCEEEEEe-------------------------------------------------CCCceeEeeec
Confidence 333 455677777551 1234556665
Q ss_pred CC--ceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE--EeccCCCcccCCccccc
Q 002209 322 DG--TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR--ELCDLPLAEDIPIAFNS 396 (953)
Q Consensus 322 ~g--~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~--~l~~~~~~~~~p~~~~~ 396 (953)
.. ....+... ..+....|+|+|+.++....++ .+.+|+...++.. .+... ..
T Consensus 218 ~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~-------------~v~i~~~~~~~~~~~~~~~~----------~~ 274 (420)
T 4gga_A 218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN-------------LVNVWPSAPGEGGWVPLQTF----------TQ 274 (420)
T ss_dssp SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-------------CEEEEESSCCSSCSCCSEEE----------CC
T ss_pred ccceeeEEecccccceeeeeecCCCCeeeeeeccc-------------cceEEeeccccccceeeeee----------cc
Confidence 32 23333333 6677889999999999887544 8899998744311 11110 01
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEec
Q 002209 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 397 ~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
....+..++|+|++..++..... +....|.+||+ ..++..........+..+.|+++++.|+.+...
T Consensus 275 ~~~~V~~~~~~p~~~~~la~~~g----------s~D~~I~iwd~---~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~ 341 (420)
T 4gga_A 275 HQGAVKAVAWCPWQSNVLATGGG----------TSDRHIRIWNV---CSGACLSAVDAHSQVCSILWSPHYKELISGHGF 341 (420)
T ss_dssp CSSCEEEEEECTTCTTEEEEEEC----------TTTCEEEEEET---TTTEEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred cCCceeeeeeCCCcccEEEEEee----------cCCCEEEEEeC---CccccceeeccccceeeeeecCCCCeEEEEEec
Confidence 12345678999999887765211 23457899996 444433333444556778999999999887643
Q ss_pred ccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 477 KTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 477 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
..+ .|.++|..++ +.......+...+.. ++|||||++|+....
T Consensus 342 ~d~--~I~iwd~~~~--~~v~~l~gH~~~V~~------l~~spdg~~l~S~s~ 384 (420)
T 4gga_A 342 AQN--QLVIWKYPTM--AKVAELKGHTSRVLS------LTMSPDGATVASAAA 384 (420)
T ss_dssp TTC--CEEEEETTTC--CEEEEECCCSSCEEE------EEECTTSSCEEEEET
T ss_pred CCC--EEEEEECCCC--cEEEEEcCCCCCEEE------EEEcCCCCEEEEEec
Confidence 333 4666677664 334444444444444 789999999987763
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.5e-13 Score=164.06 Aligned_cols=190 Identities=8% Similarity=0.018 Sum_probs=118.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccc--------cceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceee
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARP--------EEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~ 181 (953)
.+..++|||||++||....++..-+++.... ...+..+.+.+ +......+.++.|.|||+.+ + .....
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~-~--~~~~~ 94 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS-Q--KVLTT 94 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT-C--SEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC-C--cEEEE
Confidence 5678999999999999887644333332221 12244566777 33233344457899999953 2 11222
Q ss_pred eecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeeccc-------CCCccccccccceEEecC
Q 002209 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQ-------SPDIYLNAIFDNFVWVNN 254 (953)
Q Consensus 182 l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~-------~~~~~~~~~~~~~~wspD 254 (953)
+. ....+....|+|||++|+... ....|.++|+++++...... .........+..++|+|+
T Consensus 95 ~~---~~~~V~~v~~sp~g~~l~sgs---------~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 95 VF---VPGKITSIDTDASLDWMLIGL---------QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp EE---CSSCEEEEECCTTCSEEEEEE---------TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred Ec---CCCCEEEEEECCCCCEEEEEc---------CCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 32 224688999999999998854 35678889998876531110 000111223778999997
Q ss_pred C-eEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeCCC
Q 002209 255 S-TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP 331 (953)
Q Consensus 255 g-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~~~ 331 (953)
+ ..|+... ..+.+ ++|+ +++.. .+...
T Consensus 163 ~~~~l~~g~-------------------------------------------------~dg~v-lWd~~~~~~~~~~~~~ 192 (902)
T 2oaj_A 163 DIGTVLISY-------------------------------------------------EYVTL-TYSLVENEIKQSFIYE 192 (902)
T ss_dssp EEEEEEEEC-------------------------------------------------SSCEE-EEETTTTEEEEEECCC
T ss_pred CCCEEEEEe-------------------------------------------------CCCcE-EEECCCCceEEEEecc
Confidence 5 5555441 22345 6676 55432 22211
Q ss_pred -------------------CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE
Q 002209 332 -------------------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (953)
Q Consensus 332 -------------------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~ 378 (953)
..+..++|||||++|+..+.+. .|.+||+..++.
T Consensus 193 ~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg-------------~i~lWd~~~g~~ 245 (902)
T 2oaj_A 193 LPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN-------------SLVFWDANSGHM 245 (902)
T ss_dssp BCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC-------------CEEEEETTTCCE
T ss_pred cCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC-------------eEEEEECCCCcE
Confidence 3477899999999999887543 899999976543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-12 Score=162.62 Aligned_cols=245 Identities=10% Similarity=0.045 Sum_probs=165.4
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+..++|||||++|++.. ....|.++++.+++........... +..++|+|||+.|++..
T Consensus 14 ~~v~~i~~sp~~~~la~~~---------~~g~v~iwd~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~------ 74 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTL---------YSGRVEIWNYETQVEVRSIQVTETP----VRAGKFIARKNWIIVGS------ 74 (814)
T ss_dssp SCEEEEEECSSSSEEEEEE---------TTSEEEEEETTTTEEEEEEECCSSC----EEEEEEEGGGTEEEEEE------
T ss_pred CceEEEEECCCCCEEEEEe---------CCCEEEEEECCCCceEEEEecCCCc----EEEEEEeCCCCEEEEEe------
Confidence 4688999999999999865 2568889998887654433322222 77999999999999771
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-CcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDG~~ 345 (953)
..+.|.++++ +|+. ..+... ..+..++|||||++
T Consensus 75 -------------------------------------------~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 111 (814)
T 3mkq_A 75 -------------------------------------------DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY 111 (814)
T ss_dssp -------------------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE
T ss_pred -------------------------------------------CCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCE
Confidence 2246778888 6643 445444 77889999999999
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCc-eE-EEeccCCCcccCCccccccccCccceeecc-CCCCceEEEEeccC
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FV-RELCDLPLAEDIPIAFNSVRKGMRSINWRS-DKPSTLYWAETQDG 422 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wsp-Dg~~i~~~~~~~~~ 422 (953)
|+..+.+ +.|.+|+++++ .. ..+..+. ..+..++|+| ||+.++..
T Consensus 112 l~~~~~d-------------g~i~vw~~~~~~~~~~~~~~~~-------------~~v~~~~~~p~~~~~l~~~------ 159 (814)
T 3mkq_A 112 VLSGSDD-------------LTVKLWNWENNWALEQTFEGHE-------------HFVMCVAFNPKDPSTFASG------ 159 (814)
T ss_dssp EEEEETT-------------SEEEEEEGGGTSEEEEEEECCS-------------SCEEEEEEETTEEEEEEEE------
T ss_pred EEEEcCC-------------CEEEEEECCCCceEEEEEcCCC-------------CcEEEEEEEcCCCCEEEEE------
Confidence 9987744 38999999854 33 3333222 2346789999 77766665
Q ss_pred CCcccccccCCeEEEEecCCCCCCCceEEeecc-cccCCeeecc--CCceEEEEEecccCceEEEEEcCCCCCCCcEEee
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCD--DSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~-~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 499 (953)
+..+.|.+|++ ..+.....+.... ..+..+.|+| ||..|+....++ .+.+++..++ +.....
T Consensus 160 -------~~dg~v~vwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg----~i~~~d~~~~--~~~~~~ 224 (814)
T 3mkq_A 160 -------CLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL----TIKIWDYQTK--SCVATL 224 (814)
T ss_dssp -------ETTSEEEEEET--TCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTS----EEEEEETTTT--EEEEEE
T ss_pred -------eCCCeEEEEEC--CCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCC----EEEEEECCCC--cEEEEE
Confidence 44568999996 2333334443333 6677899999 899888775433 5667777664 333333
Q ss_pred cCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEec
Q 002209 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 500 ~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~ 569 (953)
......+.. +.|+|||+.++....+ ..|++||+.+++......
T Consensus 225 ~~~~~~v~~------~~~~~~~~~l~~~~~d---------------------g~v~vwd~~~~~~~~~~~ 267 (814)
T 3mkq_A 225 EGHMSNVSF------AVFHPTLPIIISGSED---------------------GTLKIWNSSTYKVEKTLN 267 (814)
T ss_dssp ECCSSCEEE------EEECSSSSEEEEEETT---------------------SCEEEEETTTCSEEEEEC
T ss_pred cCCCCCEEE------EEEcCCCCEEEEEeCC---------------------CeEEEEECCCCcEEEEee
Confidence 333333332 7899999988877632 138899988877655443
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.9e-14 Score=152.37 Aligned_cols=120 Identities=17% Similarity=0.035 Sum_probs=79.6
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCC
Q 002209 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT 720 (953)
Q Consensus 641 ~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~ 720 (953)
...+...+|..++....-++ + .|.||++||++.... + ......+...||.|++
T Consensus 16 ~~~~~~~~g~~l~~~~~g~~------~--g~~vvllHG~~~~~~------------~----~~~~~~~~~~~~~vi~--- 68 (317)
T 1wm1_A 16 SGWLDTGDGHRIYWELSGNP------N--GKPAVFIHGGPGGGI------------S----PHHRQLFDPERYKVLL--- 68 (317)
T ss_dssp EEEEECSSSCEEEEEEEECT------T--SEEEEEECCTTTCCC------------C----GGGGGGSCTTTEEEEE---
T ss_pred eeEEEcCCCcEEEEEEcCCC------C--CCcEEEECCCCCccc------------c----hhhhhhccccCCeEEE---
Confidence 33466668888876655332 1 355889999642110 0 0111223457999999
Q ss_pred CCCCCCCChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 721 TPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 721 ~~~~G~G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
+|.+|+|.+.... ......++|+.+.++.+ +.+++.|+||||||.+++.++.++|++++++|++++.
T Consensus 69 ~D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 139 (317)
T 1wm1_A 69 FDQRGCGRSRPHASLDNNTTWHLVADIERLREMA------GVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIF 139 (317)
T ss_dssp ECCTTSTTCBSTTCCTTCSHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred ECCCCCCCCCCCcccccccHHHHHHHHHHHHHHc------CCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccC
Confidence 5557888875421 12455666666555443 2458999999999999999999999999999998754
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8.1e-14 Score=156.39 Aligned_cols=150 Identities=19% Similarity=0.256 Sum_probs=90.4
Q ss_pred CceEEEEEEcCC--C--cEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcC
Q 002209 637 LQKELIKYQRKD--G--VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG 712 (953)
Q Consensus 637 ~~~~~~~~~~~d--g--~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G 712 (953)
+...++.|.+.+ | ..+.++++.|.+..+ .++.|+||++||+.............. .......+..|+++|
T Consensus 44 v~~~~i~y~t~~~~g~~~~~~g~l~~P~~~~~--~~~~P~vv~~HG~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~G 117 (397)
T 3h2g_A 44 VRVAEFTYATIGVEGEPATASGVLLIPGGERC--SGPYPLLGWGHPTEALRAQEQAKEIRD----AKGDDPLVTRLASQG 117 (397)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEEECTTC--CSCEEEEEEECCCCCBTTCCHHHHHHH----TTTCSHHHHTTGGGT
T ss_pred eEEEEEEEEecCCCCCeEEEEEEEEeCCCCCC--CCCCcEEEEeCCCcCCCCccccccccc----ccchHHHHHHHHHCC
Confidence 445667776554 4 368999999987533 245999999999643211000000000 001224466788999
Q ss_pred cEEEEcCCCCCCCCCChhhh---hh---hHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHH-hCC---
Q 002209 713 FAILGGPTTPIIGEGDEEAN---DR---FVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLA-HAP--- 781 (953)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~---~~---~~~~~~~D~~~~~~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~-~~p--- 781 (953)
|+|+.+|+ +|+|.+... .. .....+.|...++..+.+. +..|+++++|+||||||.+++.++. ..+
T Consensus 118 ~~V~~~D~---~G~G~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~ 194 (397)
T 3h2g_A 118 YVVVGSDY---LGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLS 194 (397)
T ss_dssp CEEEEECC---TTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCT
T ss_pred CEEEEecC---CCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcC
Confidence 99999666 455554211 11 1123445555555555443 4445689999999999999988873 221
Q ss_pred --CcccEEEEcccCCC
Q 002209 782 --HLFCCGIARSGAYN 795 (953)
Q Consensus 782 --~~~~a~v~~~~~~d 795 (953)
-.+.++++.+++++
T Consensus 195 ~~~~~~~~~~~~~~~~ 210 (397)
T 3h2g_A 195 KEFHLVASAPISGPYA 210 (397)
T ss_dssp TTSEEEEEEEESCCSS
T ss_pred cCcceEEEeccccccc
Confidence 15778888777665
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-14 Score=157.28 Aligned_cols=236 Identities=11% Similarity=0.115 Sum_probs=145.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCC-CC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DG 188 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~-~~ 188 (953)
.+..++|||||++||....+ +.|.||++.+ +..+.+..+. +.
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d---------------------------------~~i~iw~~~~----~~~~~~~~~~~h~ 55 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTAT---------------------------------NQVELYEQDG----NGWKHARTFSDHD 55 (377)
T ss_dssp CCSCCEECSSSSEEECCCSS---------------------------------SCBCEEEEET----TEEEECCCBCCCS
T ss_pred cEEEEEECCCCCEEEEecCC---------------------------------CEEEEEEccC----CceEEEEEEecCC
Confidence 68899999999999887654 3678999853 2112222232 22
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc----eeecccCCCccccccccceEEecCCeEEEEEecC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK----ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~----~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 264 (953)
..+..+.|+|||+.|+.... ...|.++|+.+++ ...+..+.. .+..++|+|||+.|+...
T Consensus 56 ~~v~~~~~s~~~~~l~s~s~---------d~~v~vwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~-- 119 (377)
T 3dwl_C 56 KIVTCVDWAPKSNRIVTCSQ---------DRNAYVYEKRPDGTWKQTLVLLRLNR-----AATFVRWSPNEDKFAVGS-- 119 (377)
T ss_dssp SCEEEEEECTTTCCEEEEET---------TSSEEEC------CCCCEEECCCCSS-----CEEEEECCTTSSCCEEEE--
T ss_pred ceEEEEEEeCCCCEEEEEeC---------CCeEEEEEcCCCCceeeeeEecccCC-----ceEEEEECCCCCEEEEEe--
Confidence 47899999999999988652 4567777877766 233333222 277899999999888761
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc----eeEeCC-C-Cccccc
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----VKEIGP-P-AVYTSL 337 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~----~~~l~~-~-~~~~~~ 337 (953)
..+.|.++++ +++ .+.+.. . ..+..+
T Consensus 120 -----------------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 120 -----------------------------------------------GARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp -----------------------------------------------SSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred -----------------------------------------------cCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence 1234556666 443 455554 3 778899
Q ss_pred ccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEec-cCCCcccCC-----ccccccccCccceeeccCCC
Q 002209 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELC-DLPLAEDIP-----IAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 338 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~-~~~~~~~~p-----~~~~~~~~~~~~~~wspDg~ 411 (953)
+|+|||++|+..+.+. .|.+||+..+...... ..+.....+ ..+ .....+..++|+|||+
T Consensus 153 ~~~~~~~~l~~~~~d~-------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~ 218 (377)
T 3dwl_C 153 DWHPNNVLLAAGCADR-------------KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN 218 (377)
T ss_dssp EECTTSSEEEEEESSS-------------CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred EEcCCCCEEEEEeCCC-------------EEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence 9999999999887443 8999998632211000 000000000 001 2224457899999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCC----ceEEeecccccCCeeeccCCceEEEEE
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG----PEILHKLDLRYGGISWCDDSLALVYES 474 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~----~~~l~~~~~~~~~~~~SpDg~~l~~~~ 474 (953)
.++.. +..+.|.+|++ .++.. ...+..+...+..+.|+|||+.|+...
T Consensus 219 ~l~~~-------------~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 219 ALAYA-------------GHDSSVTIAYP--SAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY 270 (377)
T ss_dssp CEEEE-------------ETTTEEC-CEE--CSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES
T ss_pred EEEEE-------------eCCCcEEEEEC--CCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc
Confidence 87776 44567888986 33333 334555666678899999999887653
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-13 Score=154.44 Aligned_cols=178 Identities=11% Similarity=0.028 Sum_probs=114.5
Q ss_pred HHHcCcEEEEcCCCCCCCCCChhhh----------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEE-EEEeChHH
Q 002209 708 WLARGFAILGGPTTPIIGEGDEEAN----------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIA-VGGHSYGA 770 (953)
Q Consensus 708 la~~G~~V~~~~~~~~~G~G~~~~~----------------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~-l~G~S~GG 770 (953)
|+++||.|+++|.+|. +|.+... .......++|+.++++.+ +.+++. |+||||||
T Consensus 94 L~~~g~~vi~~D~~G~--~g~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~~lvGhS~Gg 165 (377)
T 2b61_A 94 LDTDRYFFISSNVLGG--CKGTTGPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEHL------GISHLKAIIGGSFGG 165 (377)
T ss_dssp EETTTCEEEEECCTTC--SSSSSCTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHT------TCCCEEEEEEETHHH
T ss_pred cccCCceEEEecCCCC--CCCCCCCcccCccccccccccCCcccHHHHHHHHHHHHHHc------CCcceeEEEEEChhH
Confidence 5578999999766541 2333211 112455556655555443 345887 99999999
Q ss_pred HHHHHHHHhCCCcccEEEEcccCCCCCCC----------------Cc---Ccccc-------------------cchhh-
Q 002209 771 FMTANLLAHAPHLFCCGIARSGAYNRTLT----------------PF---GFQNE-------------------DRTLW- 811 (953)
Q Consensus 771 ~~a~~~a~~~p~~~~a~v~~~~~~d~~~~----------------~~---~~~~~-------------------~~~~~- 811 (953)
.+++.+|.++|++++++|++++....... .+ .+... ....+
T Consensus 166 ~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (377)
T 2b61_A 166 MQANQWAIDYPDFMDNIVNLCSSIYFSAEAIGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLA 245 (377)
T ss_dssp HHHHHHHHHSTTSEEEEEEESCCSSCCHHHHHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHCchhhheeEEeccCccccccchhHHHHHHHHHhcCccccccchhccCCCchhhhHHHHhhhhcccCHHHHH
Confidence 99999999999999999999885432100 00 00000 00000
Q ss_pred -----------------hhH------------------------HHHHhcC-------cccccCCCCCcEEEEEeCCCCC
Q 002209 812 -----------------EAT------------------------STYVEMS-------PFMSANKLKKPILLVHGEEDNN 843 (953)
Q Consensus 812 -----------------~~~------------------------~~~~~~s-------p~~~~~~i~~P~Li~~G~~D~~ 843 (953)
... ..+.... ....+.++++|+|+++|++|..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~ 325 (377)
T 2b61_A 246 KAFGRATKSDGSFWGDYFQVESYLSYQGKKFLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQL 325 (377)
T ss_dssp HHTTTCBCTTCCTTSCCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSS
T ss_pred HHhccccccccccccchHHHHHHHHhhhhhhccccChhHHHHHHHHHhccccccccchHHhhhhhcCCCEEEEecCCccc
Confidence 000 0011111 1345678899999999999999
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEEEeC-CCCccCCCcccHHHHHHHHHHHHHH
Q 002209 844 SGTLTMQSDRFFNALKGHGALCRLVILP-FESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 844 v~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
+| +++..+..+.+.+.....++++++ ++||... .+....+.+.+.+||++
T Consensus 326 ~~--~~~~~~~~~~l~~~~~~~~~~~i~~~~gH~~~-~e~p~~~~~~i~~fl~~ 376 (377)
T 2b61_A 326 FK--PIDLYKSKQLLEQSGVDLHFYEFPSDYGHDAF-LVDYDQFEKRIRDGLAG 376 (377)
T ss_dssp SC--HHHHHHHHHHHHHTTCEEEEEEECCTTGGGHH-HHCHHHHHHHHHHHHHT
T ss_pred CC--ccchHHHHHHHHhcCCCceEEEeCCCCCchhh-hcCHHHHHHHHHHHHhc
Confidence 98 866556666666665668999999 9999864 45567888888999865
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-12 Score=142.29 Aligned_cols=283 Identities=8% Similarity=0.051 Sum_probs=168.0
Q ss_pred CcccceEeccCC-CeEEEEEeeccccCCCCcceEEEEECCCCc-----e-eecccCCCccccccccceEEecCCeEEEEE
Q 002209 189 AKLNFVTWSQDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTGK-----A-RPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG-~~laf~~~~~~~~~~~~~~~l~~~d~~~g~-----~-~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
..+...+|+|++ +.|+..+ . ...|.++++.+.. . +.+..+.. .+..++|+|||+.|+..
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s-------~--D~~v~~W~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSAS-------R--DKTLISWKLTGDDQKFGVPVRSFKGHSH-----IVQDCTLTADGAYALSA 83 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEE-------T--TSEEEEEEEEEETTEEEEEEEEEECCSS-----CEEEEEECTTSSEEEEE
T ss_pred ceEEEEEccCCCccEEEEec-------C--CccEEEecCCCCCccccccceEEeCCcc-----cEEEEEECCCCCEEEEE
Confidence 468889999977 5555433 2 3455555544321 1 12222222 26789999999999866
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-Ccccccc
Q 002209 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLD 338 (953)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~ 338 (953)
. ..+.|.++|+ +|+. +.+... ..+..++
T Consensus 84 s-------------------------------------------------~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~ 114 (319)
T 3frx_A 84 S-------------------------------------------------WDKTLRLWDVATGETYQRFVGHKSDVMSVD 114 (319)
T ss_dssp E-------------------------------------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred e-------------------------------------------------CCCEEEEEECCCCCeeEEEccCCCcEEEEE
Confidence 1 2246777888 7754 344444 7788999
Q ss_pred cCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC------C
Q 002209 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP------S 412 (953)
Q Consensus 339 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~------~ 412 (953)
|+|||+.|+..+.+. .|.+||+.+.....+..+. ..+..+.|+|+++ .
T Consensus 115 ~~~~~~~l~s~s~D~-------------~i~vwd~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 115 IDKKASMIISGSRDK-------------TIKVWTIKGQCLATLLGHN-------------DWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp ECTTSCEEEEEETTS-------------CEEEEETTSCEEEEECCCS-------------SCEEEEEECCC------CCE
T ss_pred EcCCCCEEEEEeCCC-------------eEEEEECCCCeEEEEeccC-------------CcEEEEEEccCCCCCCCccE
Confidence 999999998887443 8999999877666554432 2345678888653 2
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEecCCCCCCC-ceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~-~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
++-. +....+.+|++ ...+ ...+..+...+..++|+|||+.|+..+.++ .+.++|+.++
T Consensus 169 l~s~-------------~~d~~i~~wd~---~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg----~i~iwd~~~~ 228 (319)
T 3frx_A 169 IISA-------------GNDKMVKAWNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG----EIMLWNLAAK 228 (319)
T ss_dssp EEEE-------------ETTSCEEEEET---TTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTC----EEEEEETTTT
T ss_pred EEEE-------------eCCCEEEEEEC---CcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCC----eEEEEECCCC
Confidence 2222 34567889996 3322 233455666778899999999998876543 4556666664
Q ss_pred CCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccC
Q 002209 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (953)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~ 571 (953)
+........ ..+.. +.|+|||.+++..... .+.+|+++++.........
T Consensus 229 --~~~~~~~~~-~~v~~------~~~sp~~~~la~~~~~----------------------~i~v~~~~~~~~~~~~~~~ 277 (319)
T 3frx_A 229 --KAMYTLSAQ-DEVFS------LAFSPNRYWLAAATAT----------------------GIKVFSLDPQYLVDDLRPE 277 (319)
T ss_dssp --EEEEEEECC-SCEEE------EEECSSSSEEEEEETT----------------------EEEEEEETTEEEEEEECCC
T ss_pred --cEEEEecCC-CcEEE------EEEcCCCCEEEEEcCC----------------------CcEEEEeCcCeeeeccCcc
Confidence 222222221 22333 8899999998876521 2777777665543332221
Q ss_pred cccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002209 572 KEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (953)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 618 (953)
...+..... ......+|+|||+.|+..... ..|++|++.+
T Consensus 278 ~~~~~~~~~---~~v~~~~~spdg~~l~sg~~D----g~i~vWd~~t 317 (319)
T 3frx_A 278 FAGYSKAAE---PHAVSLAWSADGQTLFAGYTD----NVIRVWQVMT 317 (319)
T ss_dssp CTTCCGGGC---CCEEEEEECTTSSEEEEEETT----SCEEEEEEEE
T ss_pred ccccccCcC---cceeEEEECCCCCEEEEeecC----ceEEEEEEee
Confidence 110000000 000125799999987754433 2477776544
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.54 E-value=6.3e-14 Score=149.77 Aligned_cols=174 Identities=11% Similarity=0.105 Sum_probs=116.2
Q ss_pred HHHHHcCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 706 LLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 706 ~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
..|++ +|.|++ +|.+|+|.+.... .......+|+.+.++.+ +.+++.|+||||||.+++.+|.++|+
T Consensus 58 ~~L~~-~~~vi~---~D~~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~GG~va~~~A~~~p~ 127 (286)
T 2puj_A 58 PFVDA-GYRVIL---KDSPGFNKSDAVVMDEQRGLVNARAVKGLMDAL------DIDRAHLVGNAMGGATALNFALEYPD 127 (286)
T ss_dssp HHHHT-TCEEEE---ECCTTSTTSCCCCCSSCHHHHHHHHHHHHHHHT------TCCCEEEEEETHHHHHHHHHHHHCGG
T ss_pred HHHhc-cCEEEE---ECCCCCCCCCCCCCcCcCHHHHHHHHHHHHHHh------CCCceEEEEECHHHHHHHHHHHhChH
Confidence 34554 599999 5556888875432 23455666666665543 23689999999999999999999999
Q ss_pred cccEEEEcccCCCCC--CC--Cc-C------c---cc--------------cc---ch----hhh----hHH---HHH--
Q 002209 783 LFCCGIARSGAYNRT--LT--PF-G------F---QN--------------ED---RT----LWE----ATS---TYV-- 818 (953)
Q Consensus 783 ~~~a~v~~~~~~d~~--~~--~~-~------~---~~--------------~~---~~----~~~----~~~---~~~-- 818 (953)
+++++|++++..... .. .. . + .. .. .. .+. .+. .+.
T Consensus 128 ~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (286)
T 2puj_A 128 RIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLIS 207 (286)
T ss_dssp GEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGGCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hhheEEEECccccCCCcccccchhhHHHHHHHhhCCcHHHHHHHHHHHhcCCccCCHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 999999998754211 00 00 0 0 00 00 00 000 000 000
Q ss_pred -------hcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHH
Q 002209 819 -------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETD 891 (953)
Q Consensus 819 -------~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 891 (953)
.......+.++++|+|+++|++|..+| +..++++.+.+. ..++++++++||... .+..+.+.+.+.
T Consensus 208 ~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~ 280 (286)
T 2puj_A 208 AQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVP--LDHGLKLLWNID----DARLHVFSKCGAWAQ-WEHADEFNRLVI 280 (286)
T ss_dssp HHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSC--THHHHHHHHHSS----SEEEEEESSCCSCHH-HHTHHHHHHHHH
T ss_pred HhhhhccccchhhHHhhcCCCEEEEEECCCCccC--HHHHHHHHHHCC----CCeEEEeCCCCCCcc-ccCHHHHHHHHH
Confidence 011234567789999999999999998 888888777664 368999999999763 456778888899
Q ss_pred HHHHH
Q 002209 892 RWLQK 896 (953)
Q Consensus 892 ~fl~~ 896 (953)
+||.+
T Consensus 281 ~fl~~ 285 (286)
T 2puj_A 281 DFLRH 285 (286)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99864
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.54 E-value=7.1e-13 Score=148.69 Aligned_cols=243 Identities=12% Similarity=0.002 Sum_probs=148.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCC----CCceeeeecC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGK----LGQEIEIQGF 185 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~----~~~~~~l~~~ 185 (953)
.+..++|+| ++|+..+.+ +.|+||++.. +. ......+..
T Consensus 18 ~i~~~~~~~--~~l~s~~~d---------------------------------g~i~iw~~~~-~~~~~~~~~~~~~~~- 60 (397)
T 1sq9_A 18 DIFSVSACN--SFTVSCSGD---------------------------------GYLKVWDNKL-LDNENPKDKSYSHFV- 60 (397)
T ss_dssp CEEEEEECS--SEEEEEETT---------------------------------SEEEEEESBC-CTTCCGGGGEEEEEC-
T ss_pred CeEEEEecC--CeEEEEcCC---------------------------------CEEEEEECCC-cccccCCCcceEEec-
Confidence 466788888 677777664 3689999854 21 001334433
Q ss_pred CCCCcccceEeccC----C---CeEEEEEeeccccCCCCcceEEEEECCCCc------eeecccCCCccccccccceEEe
Q 002209 186 PDGAKLNFVTWSQD----G---KHLAFSIRIDAEDSSSSKLRVWVADVDTGK------ARPLFQSPDIYLNAIFDNFVWV 252 (953)
Q Consensus 186 ~~~~~~~~~~wSPD----G---~~laf~~~~~~~~~~~~~~~l~~~d~~~g~------~~~lt~~~~~~~~~~~~~~~ws 252 (953)
....+....|+|| | +.|+.... ...|+++++.+++ ...+...........+..+.|+
T Consensus 61 -h~~~v~~~~~~~~~~~~g~~~~~l~s~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 130 (397)
T 1sq9_A 61 -HKSGLHHVDVLQAIERDAFELCLVATTSF---------SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 130 (397)
T ss_dssp -CTTCEEEEEEEEEEETTTEEEEEEEEEET---------TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEE
T ss_pred -CCCcEEEEEEecccccCCccccEEEEEcC---------CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEe
Confidence 2346899999999 9 88887552 4567777777766 4444433200001127789999
Q ss_pred ----cCCeE-EEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C----
Q 002209 253 ----NNSTL-LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D---- 322 (953)
Q Consensus 253 ----pDg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~---- 322 (953)
|||+. |+... ..+.|.++++ +
T Consensus 131 ~~~~~~~~~~l~~~~-------------------------------------------------~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 131 ASNDRLLSHRLVATD-------------------------------------------------VKGTTYIWKFHPFADE 161 (397)
T ss_dssp CCC----CEEEEEEE-------------------------------------------------TTSCEEEEEEESSSSH
T ss_pred eccCCCCceEEEEEe-------------------------------------------------CCCcEEEEeCCccccc
Confidence 99998 77651 1134555555 4
Q ss_pred --Cc-ee-----Ee-------CCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-Eecc--
Q 002209 323 --GT-VK-----EI-------GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCD-- 383 (953)
Q Consensus 323 --g~-~~-----~l-------~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~-- 383 (953)
++ .. .+ ... ..+..++|+||| .|+....+ +.|.+||+..+... .+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~ 227 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-------------GTVQISELSTLRPLYNFESQH 227 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-------------SEEEEEETTTTEEEEEEECCC
T ss_pred cccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-------------CcEEEEECCCCceeEEEeccc
Confidence 32 22 33 112 667889999999 77666533 38999999865433 3332
Q ss_pred -CCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccC---CeEEEEecCCCCCCCceEEee------
Q 002209 384 -LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPR---DIIYTQQAEPVQGEGPEILHK------ 453 (953)
Q Consensus 384 -~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~---~~l~~~d~~~~~g~~~~~l~~------ 453 (953)
+... ...+..++|+|||+.++.. +.. +.|.+||+ .++.....+..
T Consensus 228 ~h~~~----------~~~i~~i~~~~~~~~l~~~-------------~~d~~~g~i~i~d~--~~~~~~~~~~~~~~~~~ 282 (397)
T 1sq9_A 228 SMINN----------SNSIRSVKFSPQGSLLAIA-------------HDSNSFGCITLYET--EFGERIGSLSVPTHSSQ 282 (397)
T ss_dssp ---CC----------CCCEEEEEECSSTTEEEEE-------------EEETTEEEEEEEET--TTCCEEEEECBC-----
T ss_pred ccccc----------CCccceEEECCCCCEEEEE-------------ecCCCCceEEEEEC--CCCcccceeccCccccc
Confidence 1000 1345689999999877665 223 58999996 23322334444
Q ss_pred -------cccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 454 -------LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 454 -------~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
+...+..+.|+|||+.|+....++ .|.++++.++
T Consensus 283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~ 323 (397)
T 1sq9_A 283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDG----KLRFWDVKTK 323 (397)
T ss_dssp ---CCBSBSSCEEEEEECSSSSEEEEEETTS----EEEEEETTTT
T ss_pred ccccccccCCcEEEEEECCCCCEEEEEeCCC----eEEEEEcCCC
Confidence 566677899999999988776443 5667777664
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-13 Score=148.45 Aligned_cols=120 Identities=14% Similarity=-0.009 Sum_probs=80.3
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCC
Q 002209 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT 720 (953)
Q Consensus 641 ~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~ 720 (953)
...++..+|..++...+-++ + .|.||++||++.... + ......+..+||.|++
T Consensus 13 ~~~~~~~~g~~l~y~~~G~~------~--g~pvvllHG~~~~~~------------~----~~~~~~~~~~~~~vi~--- 65 (313)
T 1azw_A 13 QGSLKVDDRHTLYFEQCGNP------H--GKPVVMLHGGPGGGC------------N----DKMRRFHDPAKYRIVL--- 65 (313)
T ss_dssp EEEEECSSSCEEEEEEEECT------T--SEEEEEECSTTTTCC------------C----GGGGGGSCTTTEEEEE---
T ss_pred cceEEcCCCCEEEEEecCCC------C--CCeEEEECCCCCccc------------c----HHHHHhcCcCcceEEE---
Confidence 34456568888876655332 1 355889999642110 0 0111223357999999
Q ss_pred CCCCCCCChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 721 TPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 721 ~~~~G~G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
+|.+|+|.|.... ......++|+.+.++.+ ..+++.|+||||||.+++.++.++|++++++|++++.
T Consensus 66 ~D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l------~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~ 136 (313)
T 1azw_A 66 FDQRGSGRSTPHADLVDNTTWDLVADIERLRTHL------GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF 136 (313)
T ss_dssp ECCTTSTTSBSTTCCTTCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred ECCCCCcCCCCCcccccccHHHHHHHHHHHHHHh------CCCceEEEEECHHHHHHHHHHHhChhheeEEEEeccc
Confidence 5557888875431 22456666766665543 2358999999999999999999999999999998754
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.2e-14 Score=153.92 Aligned_cols=179 Identities=15% Similarity=0.091 Sum_probs=116.9
Q ss_pred HHHHHHHcCcEEEEcCCCCCCCCCChhhh---------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHH
Q 002209 704 SVLLWLARGFAILGGPTTPIIGEGDEEAN---------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA 774 (953)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~~---------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~ 774 (953)
....|+++||.|+.+|. +|+|.+... .......+.|+.++++++.++ .+.++++++||||||.+++
T Consensus 85 ~~~~l~~~g~~v~~~d~---~G~G~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a~ 159 (354)
T 2rau_A 85 IVLYLARNGFNVYTIDY---RTHYVPPFLKDRQLSFTANWGWSTWISDIKEVVSFIKRD--SGQERIYLAGESFGGIAAL 159 (354)
T ss_dssp HHHHHHHTTEEEEEEEC---GGGGCCTTCCGGGGGGGTTCSHHHHHHHHHHHHHHHHHH--HCCSSEEEEEETHHHHHHH
T ss_pred HHHHHHhCCCEEEEecC---CCCCCCCcccccccccccCCcHHHHHHHHHHHHHHHHHh--cCCceEEEEEECHhHHHHH
Confidence 46678889999999555 566665432 112467788999999998775 2346899999999999999
Q ss_pred HHHHhC-CCcccEEEEcccCCCC--CCCCc-----------------------Ccc----------------c---ccch
Q 002209 775 NLLAHA-PHLFCCGIARSGAYNR--TLTPF-----------------------GFQ----------------N---EDRT 809 (953)
Q Consensus 775 ~~a~~~-p~~~~a~v~~~~~~d~--~~~~~-----------------------~~~----------------~---~~~~ 809 (953)
.++.++ |++++++|++++.... ....+ .+. . ....
T Consensus 160 ~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (354)
T 2rau_A 160 NYSSLYWKNDIKGLILLDGGPTKHGIRPKFYTPEVNSIEEMEAKGIYVIPSRGGPNNPIWSYALANPDMPSPDPKYKSIS 239 (354)
T ss_dssp HHHHHHHHHHEEEEEEESCSCBCTTCC--CCCCSCSSHHHHHHHTCCEEECSSSTTCTHHHHHHHSTTSCCSSTTSSSHH
T ss_pred HHHHhcCccccceEEEecccccccCcccchhhhhhhhHHHhhhhcccccCCCchhhhHHHHHhccccccCccccchhhHH
Confidence 999998 9999999998653211 00000 000 0 0000
Q ss_pred hhhhHHHH----------------------------------HhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHH
Q 002209 810 LWEATSTY----------------------------------VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (953)
Q Consensus 810 ~~~~~~~~----------------------------------~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~ 855 (953)
.|-....+ ...+....+.++++|+||+||++|.++| ..+.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p---~~~~~l- 315 (354)
T 2rau_A 240 DFLMDSLYVTGSANPYDYPYSKKEDMFPILASFDPYWPYRLSLERDLKFDYEGILVPTIAFVSERFGIQI---FDSKIL- 315 (354)
T ss_dssp HHHHHHHHHTTSCCTTSTTCCCHHHHHHHHHTSCSEEEHHHHHTTTCCCCCTTCCCCEEEEEETTTHHHH---BCGGGS-
T ss_pred HHHHHhhhccccCCcccCCCccHHHHHHHHhhhccccccccccCcccccccccCCCCEEEEecCCCCCCc---cchhhh-
Confidence 00000000 1112234456889999999999998754 233222
Q ss_pred HHHHhCCCcEEEEEeCCCCccCC--CcccHHHHHHHHHHHHHHh
Q 002209 856 NALKGHGALCRLVILPFESHGYA--ARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 856 ~~l~~~g~~~~~~~~~~~~H~~~--~~~~~~~~~~~i~~fl~~~ 897 (953)
....++++++++||... ..+....+.+.+.+||+++
T Consensus 316 ------~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 353 (354)
T 2rau_A 316 ------PSNSEIILLKGYGHLDVYTGENSEKDVNSVVLKWLSQQ 353 (354)
T ss_dssp ------CTTCEEEEETTCCGGGGTSSTTHHHHTHHHHHHHHHHH
T ss_pred ------ccCceEEEcCCCCCchhhcCCCcHHHHHHHHHHHHHhc
Confidence 13469999999999753 2344678889999999874
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-14 Score=140.37 Aligned_cols=183 Identities=13% Similarity=-0.050 Sum_probs=114.3
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~ 749 (953)
.|+||++||..... . ..+.......|+++||.|+.++++. .+ .+ .....++|+.+.++.
T Consensus 4 ~p~vv~~HG~~~~~-----------~--~~~~~~~~~~l~~~g~~v~~~d~~~---~~---~~--~~~~~~~~~~~~~~~ 62 (192)
T 1uxo_A 4 TKQVYIIHGYRASS-----------T--NHWFPWLKKRLLADGVQADILNMPN---PL---QP--RLEDWLDTLSLYQHT 62 (192)
T ss_dssp CCEEEEECCTTCCT-----------T--STTHHHHHHHHHHTTCEEEEECCSC---TT---SC--CHHHHHHHHHTTGGG
T ss_pred CCEEEEEcCCCCCc-----------c--hhHHHHHHHHHHhCCcEEEEecCCC---CC---CC--CHHHHHHHHHHHHHh
Confidence 58899999963211 1 0112222235778999999977751 11 11 123334444433332
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--cccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccC
Q 002209 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSAN 827 (953)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 827 (953)
. .+++.++||||||.+++.++.++|+ +++++|+++|+...... +.. .......+ .....+.
T Consensus 63 ------~-~~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~~---~~~-~~~~~~~~------~~~~~~~ 125 (192)
T 1uxo_A 63 ------L-HENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPT---LQM-LDEFTQGS------FDHQKII 125 (192)
T ss_dssp ------C-CTTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTT---CGG-GGGGTCSC------CCHHHHH
T ss_pred ------c-cCCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCcccc---chh-hhhhhhcC------CCHHHHH
Confidence 2 4689999999999999999999998 99999999986542110 000 00000000 0012233
Q ss_pred CCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 828 ~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
++++|+|+++|++|..+| ++.+.++.+.+ . .++++++++||.+... .. ..+..+.+||.+++.
T Consensus 126 ~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~-~----~~~~~~~~~gH~~~~~-~~-~~~~~~~~~l~~~l~ 188 (192)
T 1uxo_A 126 ESAKHRAVIASKDDQIVP--FSFSKDLAQQI-D----AALYEVQHGGHFLEDE-GF-TSLPIVYDVLTSYFS 188 (192)
T ss_dssp HHEEEEEEEEETTCSSSC--HHHHHHHHHHT-T----CEEEEETTCTTSCGGG-TC-SCCHHHHHHHHHHHH
T ss_pred hhcCCEEEEecCCCCcCC--HHHHHHHHHhc-C----ceEEEeCCCcCccccc-cc-ccHHHHHHHHHHHHH
Confidence 456799999999999998 89888888877 2 4889999999987422 11 112335666666664
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-13 Score=144.51 Aligned_cols=171 Identities=14% Similarity=0.168 Sum_probs=115.8
Q ss_pred HcCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccE
Q 002209 710 ARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (953)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (953)
++||.|++ +|.+|+|.+.... .......+|+.+.++.+ ..+++.|+||||||.+++.+|.++|+++++
T Consensus 52 ~~~~~vi~---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~GG~ia~~~A~~~P~~v~~ 122 (282)
T 1iup_A 52 SKFYRVIA---PDMVGFGFTDRPENYNYSKDSWVDHIIGIMDAL------EIEKAHIVGNAFGGGLAIATALRYSERVDR 122 (282)
T ss_dssp TTTSEEEE---ECCTTSTTSCCCTTCCCCHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHSGGGEEE
T ss_pred ccCCEEEE---ECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEECHhHHHHHHHHHHChHHHHH
Confidence 67999999 5556888775432 23556677777666654 235899999999999999999999999999
Q ss_pred EEEcccCCCCCCC-C-----cCcc---------------cc---cchh----hh---h---HHHHHhc------------
Q 002209 787 GIARSGAYNRTLT-P-----FGFQ---------------NE---DRTL----WE---A---TSTYVEM------------ 820 (953)
Q Consensus 787 ~v~~~~~~d~~~~-~-----~~~~---------------~~---~~~~----~~---~---~~~~~~~------------ 820 (953)
+|++++....... . +.+. .. .... +. . ...+...
T Consensus 123 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (282)
T 1iup_A 123 MVLMGAAGTRFDVTEGLNAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDAL 202 (282)
T ss_dssp EEEESCCCSCCCCCHHHHHHHTCCSCHHHHHHHHHHHCSSGGGCCHHHHHHHHHHHTSTTHHHHHHHHSCSSTHHHHHHH
T ss_pred HHeeCCccCCCCCCHHHHHHhcCCCcHHHHHHHHHHhhcCcccCCHHHHHHHHhhccChHHHHHHHHHHhcccccccccc
Confidence 9999875421100 0 0000 00 0000 00 0 0001100
Q ss_pred -CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 821 -SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 821 -sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
.+...+.++++|+|+++|++|..+| ++.+.++.+.+. ..++++++++||... .+..+.+.+.+.+||++
T Consensus 203 ~~~~~~l~~i~~P~lii~G~~D~~~p--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 272 (282)
T 1iup_A 203 ASSDEDIKTLPNETLIIHGREDQVVP--LSSSLRLGELID----RAQLHVFGRCGHWTQ-IEQTDRFNRLVVEFFNE 272 (282)
T ss_dssp CCCHHHHTTCCSCEEEEEETTCSSSC--HHHHHHHHHHCT----TEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHT
T ss_pred ccchhhhhhcCCCEEEEecCCCCCCC--HHHHHHHHHhCC----CCeEEEECCCCCCcc-ccCHHHHHHHHHHHHhc
Confidence 0113567889999999999999998 888887776654 368999999999763 56677888889999875
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-13 Score=150.91 Aligned_cols=297 Identities=8% Similarity=0.119 Sum_probs=172.9
Q ss_pred cccceEeccCCCeEEEEEeecc--ccCCCCcceEEEEECCCCcee---ecccCCCccccccccceEEecCCeEEEEEecC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDA--EDSSSSKLRVWVADVDTGKAR---PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~--~~~~~~~~~l~~~d~~~g~~~---~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 264 (953)
.+...+|||||+.++++..... .........|+++++.+++.. ...... ..+..++|+|||+.|+...
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~-- 86 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVD-----SKFNDLDWSHNNKIIAGAL-- 86 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCS-----SCEEEEEECSSSSCEEEEE--
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecC-----CceEEEEECCCCCeEEEEc--
Confidence 4677899999996665542110 000034567888888876532 222222 2277999999999988761
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C---C--ceeEeCCC-Cccccc
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D---G--TVKEIGPP-AVYTSL 337 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~---g--~~~~l~~~-~~~~~~ 337 (953)
..+.|.++++ + + ....+... ..+..+
T Consensus 87 -----------------------------------------------~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~ 119 (416)
T 2pm9_A 87 -----------------------------------------------DNGSLELYSTNEANNAINSMARFSNHSSSVKTV 119 (416)
T ss_dssp -----------------------------------------------SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEE
T ss_pred -----------------------------------------------cCCeEEEeecccccccccchhhccCCccceEEE
Confidence 1234556666 4 2 33444444 778899
Q ss_pred ccCCC-CcEEEEEEecCCccccccCCCCCcceEEEeccCce-------EEEeccCCCcccCCccccccccCccceeeccC
Q 002209 338 DPSPD-EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-------VRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 338 ~~SpD-G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-------~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
+|+|| ++.|+..+.+ +.|.+||+.++. ...+.. .......+..++|+||
T Consensus 120 ~~~~~~~~~l~s~~~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~ 176 (416)
T 2pm9_A 120 KFNAKQDNVLASGGNN-------------GEIFIWDMNKCTESPSNYTPLTPGQ----------SMSSVDEVISLAWNQS 176 (416)
T ss_dssp EECSSSTTBEEEECSS-------------SCEEBCBTTTTSSCTTTCCCBCCCC----------SCCSSCCCCEEEECSS
T ss_pred EEcCCCCCEEEEEcCC-------------CeEEEEECCCCcccccccccccccc----------ccCCCCCeeEEEeCCC
Confidence 99999 7777766533 389999998554 111110 0122244578999999
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEEeec------ccccCCeeeccCCceEEEEEecccCceE
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKL------DLRYGGISWCDDSLALVYESWYKTRRTR 482 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~------~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 482 (953)
+..+++.. +..+.|.+||+ ..++. ..+... ...+..+.|+|+|..+++....++....
T Consensus 177 ~~~~l~~~------------~~dg~v~iwd~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~ 241 (416)
T 2pm9_A 177 LAHVFASA------------GSSNFASIWDL---KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS 241 (416)
T ss_dssp CTTEEEEE------------SSSSCEEEEET---TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred CCcEEEEE------------cCCCCEEEEEC---CCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence 65544441 34567899996 33333 223222 4556789999998654444433321113
Q ss_pred EEEEcCCCCCCCcEEeec-CCCccccCCCCCCCeEecc-CCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECC
Q 002209 483 TWVISPGSKDVAPRILFD-RSSEDVYSDPGSPMMRRTS-TGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN 560 (953)
Q Consensus 483 l~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~ 560 (953)
|.++|+.++. .+..... .....+.. +.|+| ||++|+....+ ..|++||+.
T Consensus 242 i~~~d~~~~~-~~~~~~~~~~~~~v~~------~~~s~~~~~~l~s~~~d---------------------g~v~~wd~~ 293 (416)
T 2pm9_A 242 ILIWDLRNAN-TPLQTLNQGHQKGILS------LDWCHQDEHLLLSSGRD---------------------NTVLLWNPE 293 (416)
T ss_dssp CCEEETTSTT-SCSBCCCSCCSSCEEE------EEECSSCSSCEEEEESS---------------------SEEEEECSS
T ss_pred EEEEeCCCCC-CCcEEeecCccCceeE------EEeCCCCCCeEEEEeCC---------------------CCEEEeeCC
Confidence 5555665531 2222222 22222333 78999 88888877632 249999998
Q ss_pred CCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCC
Q 002209 561 TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (953)
Q Consensus 561 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~ 620 (953)
+++.......... .-...+|+|++..++++.+. -..+.++++.+++
T Consensus 294 ~~~~~~~~~~~~~-----------~v~~~~~s~~~~~~l~s~~~---d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 294 SAEQLSQFPARGN-----------WCFKTKFAPEAPDLFACASF---DNKIEVQTLQNLT 339 (416)
T ss_dssp SCCEEEEEECSSS-----------CCCCEEECTTCTTEEEECCS---SSEEEEEESCCCC
T ss_pred CCccceeecCCCC-----------ceEEEEECCCCCCEEEEEec---CCcEEEEEccCCC
Confidence 8876554433221 01235789998444444433 2468888887664
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-13 Score=153.26 Aligned_cols=119 Identities=14% Similarity=0.132 Sum_probs=84.7
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCC
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (953)
..+|.++++..+-|++ ...|+||++||.+... ..|. .....|+++||.|+.+|. .|
T Consensus 9 ~~~g~~l~y~~~G~~~------~~~~~vv~~hG~~~~~-----------~~~~----~~~~~l~~~g~~vi~~d~---~g 64 (356)
T 2e3j_A 9 NCRGTRIHAVADSPPD------QQGPLVVLLHGFPESW-----------YSWR----HQIPALAGAGYRVVAIDQ---RG 64 (356)
T ss_dssp EETTEEEEEEEECCTT------CCSCEEEEECCTTCCG-----------GGGT----TTHHHHHHTTCEEEEECC---TT
T ss_pred ccCCeEEEEEEecCCC------CCCCEEEEECCCCCcH-----------HHHH----HHHHHHHHcCCEEEEEcC---CC
Confidence 3578889888876642 1257899999964211 1121 235567888999999555 56
Q ss_pred CCChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCC
Q 002209 726 EGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (953)
Q Consensus 726 ~G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (953)
+|.+.... ........|+.++++.+ +.+++.|+||||||.+++.++.++|++++++|++++..
T Consensus 65 ~g~s~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 65 YGRSSKYRVQKAYRIKELVGDVVGVLDSY------GAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp STTSCCCCSGGGGSHHHHHHHHHHHHHHT------TCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred CCCCCCCCcccccCHHHHHHHHHHHHHHc------CCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 77664321 23456667777766654 34689999999999999999999999999999988654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-12 Score=139.11 Aligned_cols=283 Identities=12% Similarity=0.067 Sum_probs=169.3
Q ss_pred CCCCceecCC-CCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCC--ceeeeecCC
Q 002209 110 PLPALSFSPQ-RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG--QEIEIQGFP 186 (953)
Q Consensus 110 ~~~~~~~SPD-G~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~--~~~~l~~~~ 186 (953)
.+..++|||| |++||..+.+ +.|.|||+....... ..+.+.+
T Consensus 40 ~V~~v~~sp~~~~~l~S~s~D---------------------------------~~i~vWd~~~~~~~~~~~~~~l~~-- 84 (340)
T 4aow_A 40 WVTQIATTPQFPDMILSASRD---------------------------------KTIIMWKLTRDETNYGIPQRALRG-- 84 (340)
T ss_dssp CEEEEEECTTCTTEEEEEETT---------------------------------SCEEEEEECCSSSCSEEEEEEECC--
T ss_pred CEEEEEEeCCCCCEEEEEcCC---------------------------------CeEEEEECCCCCcccceeeEEEeC--
Confidence 5778999998 5778777765 367999985422111 1122322
Q ss_pred CCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 187 ~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
....+....|+|||+.|+... ....|++++...+............ .....++++++.|+...
T Consensus 85 h~~~V~~~~~s~dg~~l~s~~---------~d~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~s---- 147 (340)
T 4aow_A 85 HSHFVSDVVISSDGQFALSGS---------WDGTLRLWDLTTGTTTRRFVGHTKD----VLSVAFSSDNRQIVSGS---- 147 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEE---------TTSEEEEEETTTTEEEEEEECCSSC----EEEEEECTTSSCEEEEE----
T ss_pred CCCCEEEEEECCCCCEEEEEc---------ccccceEEeecccceeeeecCCCCc----eeEEEEeecCccceeec----
Confidence 224788999999999998754 2557888888876654443333221 45677889998887651
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeC--CC-CcccccccCCC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG--PP-AVYTSLDPSPD 342 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~--~~-~~~~~~~~SpD 342 (953)
..+.+.++++ ......+. .. ..+...+|+++
T Consensus 148 ---------------------------------------------~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 148 ---------------------------------------------RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp ---------------------------------------------TTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred ---------------------------------------------CCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence 1134455566 33222222 12 55677788888
Q ss_pred CcEEEEEEecCCccccccCCCCCcceEEEeccCceEEE-eccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002209 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 343 G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~-l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
+...++.+.. ..+.|.+||+..+.... +..+. ..+..++|+|||+.++..
T Consensus 183 ~~~~~~~s~~-----------~d~~i~i~d~~~~~~~~~~~~h~-------------~~v~~~~~s~~~~~l~s~----- 233 (340)
T 4aow_A 183 SSNPIIVSCG-----------WDKLVKVWNLANCKLKTNHIGHT-------------GYLNTVTVSPDGSLCASG----- 233 (340)
T ss_dssp SSSCEEEEEE-----------TTSCEEEEETTTTEEEEEECCCS-------------SCEEEEEECTTSSEEEEE-----
T ss_pred CCCcEEEEEc-----------CCCEEEEEECCCCceeeEecCCC-------------CcEEEEEECCCCCEEEEE-----
Confidence 7654433311 12379999998665433 32221 335679999999876654
Q ss_pred CCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeec-
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD- 500 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~- 500 (953)
+..+.+.+||+ ...+..........+..+.|+|++..++.. .++ .+.++|+.++ .......
T Consensus 234 --------s~Dg~i~iwd~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~----~i~iwd~~~~--~~~~~~~~ 295 (340)
T 4aow_A 234 --------GKDGQAMLWDL---NEGKHLYTLDGGDIINALCFSPNRYWLCAA-TGP----SIKIWDLEGK--IIVDELKQ 295 (340)
T ss_dssp --------ETTCEEEEEET---TTTEEEEEEECSSCEEEEEECSSSSEEEEE-ETT----EEEEEETTTT--EEEEEECC
T ss_pred --------eCCCeEEEEEe---ccCceeeeecCCceEEeeecCCCCceeecc-CCC----EEEEEECCCC--eEEEeccc
Confidence 44568899996 333332333344456778999998765544 322 4555666653 1111111
Q ss_pred --------CCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCc
Q 002209 501 --------RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (953)
Q Consensus 501 --------~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~ 563 (953)
.....+.. ++|+|||++|+....+. .|++||+.+|.
T Consensus 296 ~~~~~~~~~h~~~v~~------l~~s~dg~~l~sgs~Dg---------------------~v~iW~~~tGt 339 (340)
T 4aow_A 296 EVISTSSKAEPPQCTS------LAWSADGQTLFAGYTDN---------------------LVRVWQVTIGT 339 (340)
T ss_dssp C-------CCCCCEEE------EEECTTSSEEEEEETTS---------------------CEEEEEEEC--
T ss_pred cceeeeccCCCCCEEE------EEECCCCCEEEEEeCCC---------------------EEEEEeCCCcC
Confidence 11111222 78999999988765322 39999998875
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-12 Score=141.20 Aligned_cols=263 Identities=10% Similarity=0.020 Sum_probs=148.8
Q ss_pred cCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCC
Q 002209 107 DAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP 186 (953)
Q Consensus 107 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~ 186 (953)
....+..++|||||++|++...+ .... +.|.+|++..++ +..+.+....
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~-----------------------~~~~------~~v~~~~~~~~~--g~~~~~~~~~ 96 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEF-----------------------SKDQ------AAVSAFAFDKEK--GTLHLLNTQK 96 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECC-----------------------SSTT------CEEEEEEEETTT--TEEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEcc-----------------------CCCC------CcEEEEEEeCCC--CcEEEeeEec
Confidence 34456788999999999888763 1111 256777774431 3333443222
Q ss_pred -CCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC-Cceeeccc---CCCcc------ccccccceEEecCC
Q 002209 187 -DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPLFQ---SPDIY------LNAIFDNFVWVNNS 255 (953)
Q Consensus 187 -~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~---~~~~~------~~~~~~~~~wspDg 255 (953)
.+......++ ||++|++... ....|.+++++. +....+.. ..... .......++|+|||
T Consensus 97 ~~~~~p~~~~~--dg~~l~~~~~--------~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg 166 (361)
T 3scy_A 97 TMGADPCYLTT--NGKNIVTANY--------SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG 166 (361)
T ss_dssp CSSSCEEEEEE--CSSEEEEEET--------TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred cCCCCcEEEEE--CCCEEEEEEC--------CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence 2223444455 8998877542 245677777753 33322211 11000 00012458999999
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc---CC----c-e--
Q 002209 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DG----T-V-- 325 (953)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~---~g----~-~-- 325 (953)
++|+++.. +...++++++ ++ + .
T Consensus 167 ~~l~~~~~------------------------------------------------~~~~v~v~~~~~~~~~~~~~~l~~ 198 (361)
T 3scy_A 167 KYLLADDL------------------------------------------------GTDQIHKFNINPNANADNKEKFLT 198 (361)
T ss_dssp SEEEEEET------------------------------------------------TTTEEEEEEECTTCCTTTCCCCEE
T ss_pred CEEEEEeC------------------------------------------------CCCEEEEEEEcCCCCcccccceee
Confidence 98887610 1234555554 33 2 1
Q ss_pred -----e-EeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCcccccccc
Q 002209 326 -----K-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (953)
Q Consensus 326 -----~-~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~ 399 (953)
. .+........++|||||++|++.... .+.|.+|+++++..+.+....... ....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~------------~~~v~v~~~~~g~~~~~~~~~~~~-------~~~~ 259 (361)
T 3scy_A 199 KGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI------------GGTVIAFRYADGMLDEIQTVAADT-------VNAQ 259 (361)
T ss_dssp EEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------------TCEEEEEEEETTEEEEEEEEESCS-------SCCC
T ss_pred cccccceecCCCCCCeEEEEcCCCCEEEEEcCC------------CCeEEEEEecCCceEEeEEEecCC-------CCCC
Confidence 1 12222556789999999998877622 247999999876655444322110 0012
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccc-CCeEEEEecCCCCCCCceEEeec--ccccCCeeeccCCceEEEEEec
Q 002209 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTP-RDIIYTQQAEPVQGEGPEILHKL--DLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 400 ~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~-~~~l~~~d~~~~~g~~~~~l~~~--~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
++..++|||||+.|+.. . .. .+.+.+|++++ .+++.+.+... ......++|||||++|+++...
T Consensus 260 ~~~~i~~spdg~~l~v~-~-----------~~~~~~i~v~~~~~-~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~ 326 (361)
T 3scy_A 260 GSGDIHLSPDGKYLYAS-N-----------RLKADGVAIFKVDE-TNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRD 326 (361)
T ss_dssp CEEEEEECTTSSEEEEE-E-----------CSSSCEEEEEEECT-TTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred CcccEEECCCCCEEEEE-C-----------CCCCCEEEEEEEcC-CCCcEEEeeEecCCCCCceEEECCCCCEEEEEECC
Confidence 33579999999976554 1 11 34677776522 23444443221 3345678999999998887643
Q ss_pred ccCceEEEEEcCCCC
Q 002209 477 KTRRTRTWVISPGSK 491 (953)
Q Consensus 477 ~~~~~~l~~~d~~~~ 491 (953)
. ....+|.+|..++
T Consensus 327 ~-~~v~v~~~d~~~g 340 (361)
T 3scy_A 327 T-NVIQIFERDQATG 340 (361)
T ss_dssp T-TEEEEEEECTTTC
T ss_pred C-CCEEEEEEECCCC
Confidence 3 3357888888775
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-12 Score=140.05 Aligned_cols=301 Identities=12% Similarity=0.042 Sum_probs=167.8
Q ss_pred CcccceEe-----cc-CCCeEEEEEeeccccCCCCcceEEEEECCCCc-------e-eecccCCCccccccccceEEecC
Q 002209 189 AKLNFVTW-----SQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-------A-RPLFQSPDIYLNAIFDNFVWVNN 254 (953)
Q Consensus 189 ~~~~~~~w-----SP-DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~-------~-~~lt~~~~~~~~~~~~~~~wspD 254 (953)
..+....| +| ||+.|+..+ . ...|.++++..++ . ..+..+.. .+..++|+||
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs-------~--D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~-----~V~~~~~~~~ 87 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGS-------R--DKTVMIWKLYEEEQNGYFGIPHKALTGHNH-----FVSDLALSQE 87 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEE-------T--TSCEEEEEECSSCCSSBSEEEEEEECCCSS-----CEEEEEECSS
T ss_pred hhhhheeeEEEeecCCCCCEEEEEc-------C--CCEEEEEECCcCCcccccccccchhccCCC-----ceEEEEECCC
Confidence 35788888 77 998888754 2 3455555655432 1 12222222 2778999999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-
Q 002209 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP- 331 (953)
Q Consensus 255 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~- 331 (953)
++.|+... ..+.|.++|+ +|+. ..+...
T Consensus 88 ~~~l~s~s-------------------------------------------------~D~~v~lwd~~~~~~~~~~~~h~ 118 (343)
T 2xzm_R 88 NCFAISSS-------------------------------------------------WDKTLRLWDLRTGTTYKRFVGHQ 118 (343)
T ss_dssp TTEEEEEE-------------------------------------------------TTSEEEEEETTSSCEEEEEECCC
T ss_pred CCEEEEEc-------------------------------------------------CCCcEEEEECCCCcEEEEEcCCC
Confidence 99888651 2245677788 6643 344444
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
..+..++|||||++|+..+.+. .|.+||+.+.....+.... .....+..++|+|+++
T Consensus 119 ~~v~~v~~sp~~~~l~s~~~d~-------------~i~~wd~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~ 175 (343)
T 2xzm_R 119 SEVYSVAFSPDNRQILSAGAER-------------EIKLWNILGECKFSSAEKE----------NHSDWVSCVRYSPIMK 175 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTS-------------CEEEEESSSCEEEECCTTT----------SCSSCEEEEEECCCCC
T ss_pred CcEEEEEECCCCCEEEEEcCCC-------------EEEEEeccCCceeeeeccc----------CCCceeeeeeeccccc
Confidence 7788999999999998877443 8999999865443332211 1112346788999884
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
..... ...+......+..+.|.+|+. .+.....+..+...+..++|+|||++|+..+.++ .+.++|+...
T Consensus 176 ~~~~~---~~~~~~l~s~~~d~~i~iwd~---~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg----~v~iwd~~~~ 245 (343)
T 2xzm_R 176 SANKV---QPFAPYFASVGWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDK----KLLIWDILNL 245 (343)
T ss_dssp SCSCC---CSSCCEEEEEETTSEEEEEET---TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTC----EEEEEESSCC
T ss_pred ccccc---CCCCCEEEEEcCCCEEEEEcC---CCceeEEEcCccccceEEEECCCCCEEEEEcCCC----eEEEEECCCC
Confidence 21000 000000001134567888984 3333334455666778899999999998876544 4555555322
Q ss_pred CCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccC
Q 002209 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (953)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~ 571 (953)
......+ ... ..+.. ++|+|++++++.... ..+.+||+.+++...+....
T Consensus 246 ~~~~~~~-~~~-~~v~~------v~~sp~~~~la~~~d----------------------~~v~iw~~~~~~~~~~~~~~ 295 (343)
T 2xzm_R 246 TYPQREF-DAG-STINQ------IAFNPKLQWVAVGTD----------------------QGVKIFNLMTQSKAPVCTIE 295 (343)
T ss_dssp SSCSEEE-ECS-SCEEE------EEECSSSCEEEEEES----------------------SCEEEEESSSCCSCSEEECC
T ss_pred cccceee-cCC-CcEEE------EEECCCCCEEEEECC----------------------CCEEEEEeCCCCCCceEEee
Confidence 1122222 111 11222 789999988765431 12888888776544321111
Q ss_pred cccc--eeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002209 572 KEKY--YETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (953)
Q Consensus 572 ~~~~--~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g 619 (953)
.... ..........-...+|+|+|+.++..... ..+.+++..++
T Consensus 296 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~D----g~v~~w~~~~g 341 (343)
T 2xzm_R 296 AEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTD----GVIRTFSFETS 341 (343)
T ss_dssp CCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETT----SEEEEEEEEEE
T ss_pred cCcchhhhhhcCCCCceEEEEECCCCCeEEEecCC----ceEEEEEEEcc
Confidence 0000 00000000000125789999877644332 35777765443
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.9e-14 Score=150.48 Aligned_cols=210 Identities=14% Similarity=0.073 Sum_probs=131.8
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|..+....+-+++ .|+||++||.+... ..|. .....| ++||.|+.+ +.+|+
T Consensus 17 ~~g~~l~~~~~g~~~--------~~~vl~lHG~~~~~-----------~~~~----~~~~~l-~~~~~v~~~---d~~G~ 69 (299)
T 3g9x_A 17 VLGERMHYVDVGPRD--------GTPVLFLHGNPTSS-----------YLWR----NIIPHV-APSHRCIAP---DLIGM 69 (299)
T ss_dssp ETTEEEEEEEESCSS--------SCCEEEECCTTCCG-----------GGGT----TTHHHH-TTTSCEEEE---CCTTS
T ss_pred eCCeEEEEEecCCCC--------CCEEEEECCCCccH-----------HHHH----HHHHHH-ccCCEEEee---CCCCC
Confidence 378888877764321 46799999964221 1121 123344 569999994 44677
Q ss_pred CChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC-cC-
Q 002209 727 GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-FG- 802 (953)
Q Consensus 727 G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~-~~- 802 (953)
|.+.... .......+|+.++++.+ +.+++.|+|||+||.+++.++.++|++++++|++++........ +.
T Consensus 70 G~s~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 143 (299)
T 3g9x_A 70 GKSDKPDLDYFFDDHVRYLDAFIEAL------GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPE 143 (299)
T ss_dssp TTSCCCCCCCCHHHHHHHHHHHHHHT------TCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEECCCBSSGGGSCG
T ss_pred CCCCCCCCcccHHHHHHHHHHHHHHh------CCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCCcchhhhhhcch
Confidence 7764432 23556667776666654 34589999999999999999999999999999988543321000 00
Q ss_pred -c-------ccc-----------------------cchhhhhHH-----------------HHHhc--------------
Q 002209 803 -F-------QNE-----------------------DRTLWEATS-----------------TYVEM-------------- 820 (953)
Q Consensus 803 -~-------~~~-----------------------~~~~~~~~~-----------------~~~~~-------------- 820 (953)
. ... .....+... .+...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (299)
T 3g9x_A 144 FARETFQAFRTADVGRELIIDQNAFIEGALPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVE 223 (299)
T ss_dssp GGHHHHHHHTSSSHHHHHHTTSCHHHHTHHHHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHH
T ss_pred HHHHHHHHHcCCCcchhhhccchhhHHHhhhhhhccCCCHHHHHHHHHHhccccccchhhhhhhhhhhccccchhhhhhh
Confidence 0 000 000000000 00000
Q ss_pred CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 821 sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
+....+.++++|+|+++|++|..+| ++.+.++.+.+. .+++++++++||... .+..+.+.+.+.+++.+
T Consensus 224 ~~~~~l~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~~~~~ 292 (299)
T 3g9x_A 224 AYMNWLHQSPVPKLLFWGTPGVLIP--PAEAARLAESLP----NCKTVDIGPGLHYLQ-EDNPDLIGSEIARWLPA 292 (299)
T ss_dssp HHHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHHHST----TEEEEEEEEESSCHH-HHCHHHHHHHHHHHSGG
T ss_pred hhhhhcccCCCCeEEEecCCCCCCC--HHHHHHHHhhCC----CCeEEEeCCCCCcch-hcCHHHHHHHHHHHHhh
Confidence 0111245678999999999999998 888888877663 368999999999863 45555666666655444
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-13 Score=149.03 Aligned_cols=117 Identities=16% Similarity=0.187 Sum_probs=83.2
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCC
Q 002209 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (953)
Q Consensus 645 ~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~ 724 (953)
...+|..++...+- + .|.||++||.+.. ...| ......|+++||.|++ .|.+
T Consensus 16 ~~~~g~~l~y~~~G--------~--g~~vvllHG~~~~--------------~~~w-~~~~~~L~~~g~~via---~Dl~ 67 (328)
T 2cjp_A 16 VAVNGLNMHLAELG--------E--GPTILFIHGFPEL--------------WYSW-RHQMVYLAERGYRAVA---PDLR 67 (328)
T ss_dssp EEETTEEEEEEEEC--------S--SSEEEEECCTTCC--------------GGGG-HHHHHHHHTTTCEEEE---ECCT
T ss_pred ecCCCcEEEEEEcC--------C--CCEEEEECCCCCc--------------hHHH-HHHHHHHHHCCcEEEE---ECCC
Confidence 33578888766541 1 3689999996421 1111 1234566778999999 5556
Q ss_pred CCCChhhh------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 725 GEGDEEAN------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 725 G~G~~~~~------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
|+|.+... .......++|+.+.++.+.. +.+++.|+||||||.+++.+|.++|++++++|++++.
T Consensus 68 G~G~S~~~~~~~~~~~~~~~~a~dl~~~l~~l~~----~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~ 138 (328)
T 2cjp_A 68 GYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAP----NEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVH 138 (328)
T ss_dssp TSTTCBCCCTTCGGGGSHHHHHHHHHHHHHHHCT----TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred CCCCCCCcCcCCcccccHHHHHHHHHHHHHHhcC----CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEccC
Confidence 88877543 12356778888888877631 2468999999999999999999999999999998754
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-13 Score=145.40 Aligned_cols=215 Identities=13% Similarity=0.140 Sum_probs=134.1
Q ss_pred EEcCCC-cEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC
Q 002209 644 YQRKDG-VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (953)
Q Consensus 644 ~~~~dg-~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (953)
+...+| ..++....- .++.|.||++||..... .....|. .....|++ .|.|++ .|
T Consensus 17 ~~~~~g~~~l~y~~~G--------~g~~~~vvllHG~~pg~-----------~~~~~w~-~~~~~L~~-~~~via---~D 72 (291)
T 2wue_A 17 EVDVDGPLKLHYHEAG--------VGNDQTVVLLHGGGPGA-----------ASWTNFS-RNIAVLAR-HFHVLA---VD 72 (291)
T ss_dssp EEESSSEEEEEEEEEC--------TTCSSEEEEECCCCTTC-----------CHHHHTT-TTHHHHTT-TSEEEE---EC
T ss_pred EEEeCCcEEEEEEecC--------CCCCCcEEEECCCCCcc-----------chHHHHH-HHHHHHHh-cCEEEE---EC
Confidence 334588 888766542 12246899999952000 0011111 12334554 499999 55
Q ss_pred CCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC--
Q 002209 723 IIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT-- 797 (953)
Q Consensus 723 ~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~-- 797 (953)
.+|+|.+.... .......+|+.+.++.+ +.+++.|+||||||.+++.+|.++|++++++|++++.....
T Consensus 73 l~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~ 146 (291)
T 2wue_A 73 QPGYGHSDKRAEHGQFNRYAAMALKGLFDQL------GLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINL 146 (291)
T ss_dssp CTTSTTSCCCSCCSSHHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSSSCCCS
T ss_pred CCCCCCCCCCCCCCcCHHHHHHHHHHHHHHh------CCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCCCCccc
Confidence 56888875432 23456677777666654 23589999999999999999999999999999998754211
Q ss_pred CCC--c-C------c---c--------------ccc---ch----hhh---hHHH---H-H---h-cC-----cc--ccc
Q 002209 798 LTP--F-G------F---Q--------------NED---RT----LWE---ATST---Y-V---E-MS-----PF--MSA 826 (953)
Q Consensus 798 ~~~--~-~------~---~--------------~~~---~~----~~~---~~~~---~-~---~-~s-----p~--~~~ 826 (953)
... . . + . ... .. .+. .+.. + . . .. .. ..+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 226 (291)
T 2wue_A 147 FAPDPTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREV 226 (291)
T ss_dssp SSCSSCHHHHHHHHHHHSCCHHHHHHHHHTSCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTSTTGGGGCGGGTG
T ss_pred cccccchhhHHHHHHhccCCHHHHHHHHHHhccCcccCCHHHHHHHHHHhcCchHHHHHHHHHhhccccccccchhHHHH
Confidence 000 0 0 0 0 000 00 000 0000 0 0 0 00 11 456
Q ss_pred CCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 827 ~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
.++++|+|+++|++|..+| +..++++.+.+. ..++++++++||... .+..+.+.+.+.+||.
T Consensus 227 ~~i~~P~lvi~G~~D~~~~--~~~~~~~~~~~p----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 288 (291)
T 2wue_A 227 YRLRQPVLLIWGREDRVNP--LDGALVALKTIP----RAQLHVFGQCGHWVQ-VEKFDEFNKLTIEFLG 288 (291)
T ss_dssp GGCCSCEEEEEETTCSSSC--GGGGHHHHHHST----TEEEEEESSCCSCHH-HHTHHHHHHHHHHHTT
T ss_pred hhCCCCeEEEecCCCCCCC--HHHHHHHHHHCC----CCeEEEeCCCCCChh-hhCHHHHHHHHHHHHh
Confidence 7789999999999999998 888887766654 368999999999763 4556777788888874
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-12 Score=154.47 Aligned_cols=244 Identities=11% Similarity=0.040 Sum_probs=154.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCC-CceeeeecCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL-GQEIEIQGFPDG 188 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~-~~~~~l~~~~~~ 188 (953)
.+..++|||||++||+.... .|.||++.+.... .....+.. +.
T Consensus 20 ~v~~~~~spdg~~l~~~~~~----------------------------------~v~v~~~~~~~~~~~~~~~~~~--h~ 63 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPCGK----------------------------------SAFVRCLDDGDSKVPPVVQFTG--HG 63 (615)
T ss_dssp CCCCCEEETTTTEEEEEETT----------------------------------EEEEEECCSSCCSSCSEEEECT--TT
T ss_pred ceeEEEECCCCCEEEEecCC----------------------------------eEEEEECCCCCCccccceEEec--CC
Confidence 57789999999999998853 6799998531100 12334433 22
Q ss_pred Cc-ccceEecc--CCCeEEEEEeeccccCCCCcceEEEEECCCC--------ceeecccCCCccccccccceEEecCCeE
Q 002209 189 AK-LNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--------KARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (953)
Q Consensus 189 ~~-~~~~~wSP--DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g--------~~~~lt~~~~~~~~~~~~~~~wspDg~~ 257 (953)
.. +....||| ||++|+.... ...|.++++.++ +.......... .+..++|+|||+.
T Consensus 64 ~~~v~~~~~sp~~~~~~l~s~~~---------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~ 130 (615)
T 1pgu_A 64 SSVVTTVKFSPIKGSQYLCSGDE---------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAG----PISDISWDFEGRR 130 (615)
T ss_dssp TSCEEEEEECSSTTCCEEEEEET---------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSS----CEEEEEECTTSSE
T ss_pred CceEEEEEECcCCCCCEEEEecC---------CCEEEEEeCCCCcccccccccccchhhcccc----cEEEEEEeCCCCE
Confidence 46 89999999 9999988552 446667776544 22221111121 2778999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-Ccccc
Q 002209 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTS 336 (953)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~ 336 (953)
|++...+. + ....|++++.......+... ..+..
T Consensus 131 l~~~~~~~--------------------------------------~-------~~~~v~~~d~~~~~~~~~~~~~~v~~ 165 (615)
T 1pgu_A 131 LCVVGEGR--------------------------------------D-------NFGVFISWDSGNSLGEVSGHSQRINA 165 (615)
T ss_dssp EEEEECCS--------------------------------------S-------CSEEEEETTTCCEEEECCSCSSCEEE
T ss_pred EEEeccCC--------------------------------------C-------CccEEEEEECCCcceeeecCCccEEE
Confidence 98772110 0 12355555543344444444 77889
Q ss_pred cccCCCCcE-EEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccC-CCCc
Q 002209 337 LDPSPDEKY-ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSD-KPST 413 (953)
Q Consensus 337 ~~~SpDG~~-l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspD-g~~i 413 (953)
++|+|||+. |+..+.+ +.|.+||+..++.. .+..+... ...+..++|+|| |+.+
T Consensus 166 ~~~~~~~~~~l~~~~~d-------------~~v~vwd~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l 222 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGDD-------------GSVVFYQGPPFKFSASDRTHHKQ----------GSFVRDVEFSPDSGEFV 222 (615)
T ss_dssp EEECSSSSCEEEEEETT-------------TEEEEEETTTBEEEEEECSSSCT----------TCCEEEEEECSTTCCEE
T ss_pred EEECCCCCcEEEEEeCC-------------CcEEEEeCCCcceeeeecccCCC----------CceEEEEEECCCCCCEE
Confidence 999999994 5554422 48999999865543 33322110 013567999999 8876
Q ss_pred eEEEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEE-e---ecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EIL-H---KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l-~---~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
+.. +..+.+.+|++ ..++. ..+ . .+...+..+.|+ |++.|+....++ .+.++++
T Consensus 223 ~~~-------------~~dg~i~vwd~---~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~----~i~~wd~ 281 (615)
T 1pgu_A 223 ITV-------------GSDRKISCFDG---KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA----TIRVWDV 281 (615)
T ss_dssp EEE-------------ETTCCEEEEET---TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS----EEEEEET
T ss_pred EEE-------------eCCCeEEEEEC---CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC----cEEEEEC
Confidence 655 44568999996 43443 333 2 556667789999 999888876543 4666676
Q ss_pred CCC
Q 002209 489 GSK 491 (953)
Q Consensus 489 ~~~ 491 (953)
.++
T Consensus 282 ~~~ 284 (615)
T 1pgu_A 282 TTS 284 (615)
T ss_dssp TTT
T ss_pred CCC
Confidence 654
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-14 Score=151.88 Aligned_cols=221 Identities=15% Similarity=0.130 Sum_probs=139.2
Q ss_pred ceEEEEEEcC-CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH------
Q 002209 638 QKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA------ 710 (953)
Q Consensus 638 ~~~~~~~~~~-dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~------ 710 (953)
.++.+++.+. -|.....++|+|+++++. ..++|||+++||... |.. .......++.
T Consensus 11 ~v~~~~~~S~~l~~~r~~~VylP~~y~~~-~~~yPVlylldG~~~---------------f~~-~~~~~~~l~~~~~~~~ 73 (331)
T 3gff_A 11 EYQSKRLESRLLKETREYVIALPEGYAQS-LEAYPVVYLLDGEDQ---------------FDH-MASLLQFLSQGTMPQI 73 (331)
T ss_dssp CEEEEEEEETTTTEEEEEEEECCTTGGGS-CCCEEEEEESSHHHH---------------HHH-HHHHHHHHTCSSSCSS
T ss_pred eEEEEEEEecCCCCeEEEEEEeCCCCCCC-CCCccEEEEecChhh---------------hHH-HHHHHHHHHhhhhcCC
Confidence 4567777765 478899999999998763 236999999999410 100 0112223332
Q ss_pred cCcEEEEcCCCC----C---------CCCC--Chh----hhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHH
Q 002209 711 RGFAILGGPTTP----I---------IGEG--DEE----ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAF 771 (953)
Q Consensus 711 ~G~~V~~~~~~~----~---------~G~G--~~~----~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~ 771 (953)
.+++||.+++.+ + .|.. ... ....+.....+ +.+.++.++..+++.+ +|+|+||||+
T Consensus 74 ~~~IvV~i~~~~R~~dytp~~~~~~~~G~~~~~~~~~~g~~~~~~~~l~~---el~p~i~~~~~~~~~r-~i~G~S~GG~ 149 (331)
T 3gff_A 74 PKVIIVGIHNTNRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEK---ELAPSIESQLRTNGIN-VLVGHSFGGL 149 (331)
T ss_dssp CCCEEEEECCSSHHHHSCSSCCSBCTTSSBCCGGGGGCCCHHHHHHHHHH---THHHHHHHHSCEEEEE-EEEEETHHHH
T ss_pred CCEEEEEECCCCcccccCCCccccccccccccccCCCCCcHHHHHHHHHH---HHHHHHHHHCCCCCCe-EEEEECHHHH
Confidence 358888754310 0 1100 000 01122222222 4455666666676655 8999999999
Q ss_pred HHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCC-------CC
Q 002209 772 MTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDN-------NS 844 (953)
Q Consensus 772 ~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~-------~v 844 (953)
+|++++.++|++|+++++.+|.+.+.. ............ .....+.|+++.||+.|. .+
T Consensus 150 ~al~~~~~~p~~F~~~~~~S~~~w~~~---------~~~~~~~~~~~~-----~~~~~~~~l~l~~G~~d~~~~~~~~~~ 215 (331)
T 3gff_A 150 VAMEALRTDRPLFSAYLALDTSLWFDS---------PHYLTLLEERVV-----KGDFKQKQLFMAIANNPLSPGFGVSSY 215 (331)
T ss_dssp HHHHHHHTTCSSCSEEEEESCCTTTTT---------THHHHHHHHHHH-----HCCCSSEEEEEEECCCSEETTTEECCH
T ss_pred HHHHHHHhCchhhheeeEeCchhcCCh---------HHHHHHHHHHhh-----cccCCCCeEEEEeCCCCCCCccchHHH
Confidence 999999999999999999999753211 011111111111 112245799999999998 45
Q ss_pred CCchHHHHHHHHHHHhC---CCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 845 GTLTMQSDRFFNALKGH---GALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 845 ~~~~~~~~~~~~~l~~~---g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
+ ...+++++++|+.. |.++++.+||+++|+... ...+...++||-....
T Consensus 216 ~--~~~~~~l~~~Lk~~~~~g~~~~~~~~pg~~H~sv~----~~~~~~~l~~lf~~~~ 267 (331)
T 3gff_A 216 H--KDLNLAFADKLTKLAPKGLGFMAKYYPEETHQSVS----HIGLYDGIRHLFKDFA 267 (331)
T ss_dssp H--HHHHHHHHHHHHHHCCTTEEEEEEECTTCCTTTHH----HHHHHHHHHHHHGGGC
T ss_pred H--HHHHHHHHHHHHhccCCCceEEEEECCCCCccccH----HHHHHHHHHHHHhhcC
Confidence 5 77889999999986 778999999999997532 3334555666655443
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-13 Score=145.87 Aligned_cols=215 Identities=13% Similarity=0.127 Sum_probs=132.7
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|.+++.... + . .|.||++||..... .....|. .....|+ ++|.|++ +|.+|+
T Consensus 23 ~~g~~l~y~~~---g-----~--g~~vvllHG~~~~~-----------~~~~~~~-~~~~~L~-~~~~vi~---~Dl~G~ 76 (296)
T 1j1i_A 23 AGGVETRYLEA---G-----K--GQPVILIHGGGAGA-----------ESEGNWR-NVIPILA-RHYRVIA---MDMLGF 76 (296)
T ss_dssp ETTEEEEEEEE---C-----C--SSEEEEECCCSTTC-----------CHHHHHT-TTHHHHT-TTSEEEE---ECCTTS
T ss_pred ECCEEEEEEec---C-----C--CCeEEEECCCCCCc-----------chHHHHH-HHHHHHh-hcCEEEE---ECCCCC
Confidence 47877765543 1 1 35789999952100 0000111 1233444 4599999 455678
Q ss_pred CChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC-----
Q 002209 727 GDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT----- 799 (953)
Q Consensus 727 G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~----- 799 (953)
|.+... .......++|+.+.++.+ + + .+++.|+||||||.+++.++.++|++++++|++++.......
T Consensus 77 G~S~~~~~~~~~~~~~~dl~~~l~~l---~-~-~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~ 151 (296)
T 1j1i_A 77 GKTAKPDIEYTQDRRIRHLHDFIKAM---N-F-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLR 151 (296)
T ss_dssp TTSCCCSSCCCHHHHHHHHHHHHHHS---C-C-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhc---C-C-CCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHH
Confidence 877521 113455566666655443 2 2 158999999999999999999999999999998875421000
Q ss_pred C-cCcc---------------ccc-------chhhhh------HHHHHh-----------cCcccccCCCCCcEEEEEeC
Q 002209 800 P-FGFQ---------------NED-------RTLWEA------TSTYVE-----------MSPFMSANKLKKPILLVHGE 839 (953)
Q Consensus 800 ~-~~~~---------------~~~-------~~~~~~------~~~~~~-----------~sp~~~~~~i~~P~Li~~G~ 839 (953)
. +.+. ... ...+.. ...+.. ......+.++++|+|+++|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~ 231 (296)
T 1j1i_A 152 PIINYDFTREGMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGK 231 (296)
T ss_dssp ----CCSCHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEET
T ss_pred HHhcccCCchHHHHHHHHhccCcccccHHHHHHHHHHhhCcchhhHHHHHHHHHHhcccccccHHHhhcCCCCEEEEEEC
Confidence 0 0000 000 000000 000100 01123457889999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
+|..+| ++.+.++.+.+. ..++++++++||... .+..+.+.+.+.+||.+.+.
T Consensus 232 ~D~~~~--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~~~ 284 (296)
T 1j1i_A 232 DDKVVP--VETAYKFLDLID----DSWGYIIPHCGHWAM-IEHPEDFANATLSFLSLRVD 284 (296)
T ss_dssp TCSSSC--HHHHHHHHHHCT----TEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHHC--
T ss_pred CCcccC--HHHHHHHHHHCC----CCEEEEECCCCCCch-hcCHHHHHHHHHHHHhccCC
Confidence 999998 888888776653 368999999999763 56677888999999988763
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.2e-14 Score=147.56 Aligned_cols=197 Identities=13% Similarity=0.156 Sum_probs=126.4
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh------hhHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND------RFVEQLVACA 743 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~------~~~~~~~~D~ 743 (953)
.|.||++||..... ..|.. ....|+ .+|.|++ +|.+|+|.+.... .......+|+
T Consensus 20 ~~~vvllHG~~~~~-----------~~w~~----~~~~L~-~~~~vi~---~Dl~G~G~S~~~~~~~~~~~~~~~~a~dl 80 (271)
T 1wom_A 20 KASIMFAPGFGCDQ-----------SVWNA----VAPAFE-EDHRVIL---FDYVGSGHSDLRAYDLNRYQTLDGYAQDV 80 (271)
T ss_dssp SSEEEEECCTTCCG-----------GGGTT----TGGGGT-TTSEEEE---CCCSCCSSSCCTTCCTTGGGSHHHHHHHH
T ss_pred CCcEEEEcCCCCch-----------hhHHH----HHHHHH-hcCeEEE---ECCCCCCCCCCCcccccccccHHHHHHHH
Confidence 37899999953211 11211 122343 4799999 5667888774321 2356667777
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC--c--Ccccc-----------cc
Q 002209 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP--F--GFQNE-----------DR 808 (953)
Q Consensus 744 ~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~--~--~~~~~-----------~~ 808 (953)
.+.++.+ +.+++.|+||||||.+++.++.++|++++++|++++........ + .+... ..
T Consensus 81 ~~~l~~l------~~~~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (271)
T 1wom_A 81 LDVCEAL------DLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNY 154 (271)
T ss_dssp HHHHHHT------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCH
T ss_pred HHHHHHc------CCCCeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhH
Confidence 7766654 23689999999999999999999999999999987642110000 0 00000 00
Q ss_pred hhh---------------hhHH----HHHh---------------cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHH
Q 002209 809 TLW---------------EATS----TYVE---------------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (953)
Q Consensus 809 ~~~---------------~~~~----~~~~---------------~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~ 854 (953)
..| +..+ .+.. .+....+.++++|+|+++|++|..+| +..++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~--~~~~~~~ 232 (271)
T 1wom_A 155 IGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAP--ATVGKYM 232 (271)
T ss_dssp HHHHHHHHHHHHCCTTCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHTTCCSCEEEEEEETCSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhccccCCCEEEEEcCCCCcCC--HHHHHHH
Confidence 000 0000 0000 11123456789999999999999988 7777777
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 855 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
.+.+. ..++++++++||... .+..+.+.+.+.+||++++
T Consensus 233 ~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~~ 271 (271)
T 1wom_A 233 HQHLP----YSSLKQMEARGHCPH-MSHPDETIQLIGDYLKAHV 271 (271)
T ss_dssp HHHSS----SEEEEEEEEESSCHH-HHCHHHHHHHHHHHHHHHC
T ss_pred HHHCC----CCEEEEeCCCCcCcc-ccCHHHHHHHHHHHHHhcC
Confidence 66553 368999999999763 5667788899999998753
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-13 Score=142.52 Aligned_cols=196 Identities=14% Similarity=0.100 Sum_probs=123.6
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh-hhHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVE 748 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~~~~ 748 (953)
.|.||++||.+... ..| ......|++ .|.|++ .|.+|+|.+.... .......+|+.+.++
T Consensus 16 ~~~vvllHG~~~~~-----------~~w----~~~~~~L~~-~~~via---~Dl~G~G~S~~~~~~~~~~~a~dl~~~l~ 76 (255)
T 3bf7_A 16 NSPIVLVHGLFGSL-----------DNL----GVLARDLVN-DHNIIQ---VDVRNHGLSPREPVMNYPAMAQDLVDTLD 76 (255)
T ss_dssp CCCEEEECCTTCCT-----------TTT----HHHHHHHTT-TSCEEE---ECCTTSTTSCCCSCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcccH-----------hHH----HHHHHHHHh-hCcEEE---ecCCCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 46789999963211 112 123344544 499999 4556788775432 234566778777777
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC-CCCCCCCc-------------Ccccc--------
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA-YNRTLTPF-------------GFQNE-------- 806 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~-~d~~~~~~-------------~~~~~-------- 806 (953)
.+ +.+++.|+||||||.+++.++.++|++++++|++++. .......+ .....
T Consensus 77 ~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (255)
T 3bf7_A 77 AL------QIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMR 150 (255)
T ss_dssp HH------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCCSCCCHHHHHHHHHHHHSCCCSHHHHHHHHT
T ss_pred Hc------CCCCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcCCcccCCcccHHHHHHHHHhccccccccHHHHHHHHh
Confidence 65 2358999999999999999999999999999987532 11000000 00000
Q ss_pred ---cchh-------------hh-hHHH----HHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcE
Q 002209 807 ---DRTL-------------WE-ATST----YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALC 865 (953)
Q Consensus 807 ---~~~~-------------~~-~~~~----~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~ 865 (953)
.... |. .... +........+.++++|+|+++|++|..++ +..+.++.+.+. ..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~~----~~ 224 (255)
T 3bf7_A 151 QHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVS--EQYRDDLLAQFP----QA 224 (255)
T ss_dssp TTCCCHHHHHHHHTTEETTEESSCHHHHHHTHHHHHCCCCCCCCCSCEEEECBTTCSTTC--GGGHHHHHHHCT----TE
T ss_pred hhcchhHHHHHHHHhccCCceeecHHHHHhhhhhccccccccccCCCeEEEECCCCCCCC--HHHHHHHHHHCC----CC
Confidence 0000 00 0000 00000001245789999999999999988 877777765543 36
Q ss_pred EEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 866 RLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 866 ~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
+++++|++||... .+....+.+.+.+|+.+|
T Consensus 225 ~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 255 (255)
T 3bf7_A 225 RAHVIAGAGHWVH-AEKPDAVLRAIRRYLNDH 255 (255)
T ss_dssp EECCBTTCCSCHH-HHCHHHHHHHHHHHHHTC
T ss_pred eEEEeCCCCCccc-cCCHHHHHHHHHHHHhcC
Confidence 9999999999863 456678888899998753
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=146.13 Aligned_cols=245 Identities=14% Similarity=0.171 Sum_probs=146.6
Q ss_pred ceEEEEEEcC-CCcEEEEEEEcCCCCCCC---CCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCc
Q 002209 638 QKELIKYQRK-DGVQLSATLYLPPGYDPS---KDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (953)
Q Consensus 638 ~~~~~~~~~~-dg~~~~~~l~~P~~~~~~---~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (953)
...++++.+. -|.++...+|+|+++... +.+++|||.++||.... ...|...+ ...+..++.|.
T Consensus 13 ~~~~~~~~S~~l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~-----------~~~w~~~~-~~~~~~~~~~~ 80 (299)
T 4fol_A 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCT-----------PDNASEKA-FWQFQADKYGF 80 (299)
T ss_dssp EEEEEEEECTTTSSEEEEEEEECGGGGCC------CBCEEEEECCTTCC-----------HHHHHHHS-CHHHHHHHHTC
T ss_pred EEEEEEEECcccCCceEEEEEcCCCCCccccccCCCcCEEEEECCCCCC-----------hHHHHHhc-hHhHHHHHcCc
Confidence 3456666653 567899999999987532 23469999999995311 11111111 12234556799
Q ss_pred EEEEcCCCCC-------------CCCCChh----------hhhhhHHHHHHHHHHHHHHHHH----cCCCCCCcEEEEEe
Q 002209 714 AILGGPTTPI-------------IGEGDEE----------ANDRFVEQLVACAEAAVEEVVR----RGVAHPSKIAVGGH 766 (953)
Q Consensus 714 ~V~~~~~~~~-------------~G~G~~~----------~~~~~~~~~~~D~~~~~~~l~~----~~~~d~~~i~l~G~ 766 (953)
++++++.... .|.+..+ ....+....++++...++.--. +...+.++.+|+|+
T Consensus 81 ~~v~p~~~p~~~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~ 160 (299)
T 4fol_A 81 AIVFPDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGI 160 (299)
T ss_dssp EEEEECSSCCSTTSCCCTTCCSSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEB
T ss_pred hhhccCCCcceeecCCCcccccccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEec
Confidence 9988553211 0111111 0123345556666666554221 11234578999999
Q ss_pred ChHHHHHHHHHHhC--CCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCC---C-CCcEEEEEeCC
Q 002209 767 SYGAFMTANLLAHA--PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK---L-KKPILLVHGEE 840 (953)
Q Consensus 767 S~GG~~a~~~a~~~--p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~---i-~~P~Li~~G~~ 840 (953)
||||+.|+.++.++ |+.|.++.+.+|+.+....++...........+...+..+++...+.+ . ..++||-+|++
T Consensus 161 SMGG~gAl~~al~~~~~~~~~~~~s~s~~~~p~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~i~id~G~~ 240 (299)
T 4fol_A 161 SMGGYGAICGYLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDS 240 (299)
T ss_dssp THHHHHHHHHHHHTGGGTCCSEEEEESCCCCGGGSHHHHHHHHHHTC-----CGGGCHHHHGGGSCCCTTCCEEEEEETT
T ss_pred CchHHHHHHHHHhCCCCCceEEEEecccccCcccccccccccccccccchhhhhhcCHHHHHHhcccCCCCceEEEecCC
Confidence 99999999999985 678999999999876543333222111111122233334444433332 2 35799999999
Q ss_pred CCCCCCchH-HHHHHHHHHHhCCCc--EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 841 DNNSGTLTM-QSDRFFNALKGHGAL--CRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 841 D~~v~~~~~-~~~~~~~~l~~~g~~--~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
|.... .. ....|.+++++++.+ +++...||.+|.+. -...+.+..+.|..++|+
T Consensus 241 D~f~~--~~l~~~~f~~a~~~~g~~~~~~~r~~~GydHsy~---f~~~fi~dhl~fha~~Lg 297 (299)
T 4fol_A 241 DPFLE--EHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYY---FVSTFVPEHAEFHARNLG 297 (299)
T ss_dssp CTTHH--HHTCTHHHHHHHTTSTTTTCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHTT
T ss_pred Ccchh--hhcCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH---HHHHHHHHHHHHHHHhcC
Confidence 98642 11 136788999888866 78999999899763 234556777888888875
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.8e-14 Score=152.48 Aligned_cols=205 Identities=15% Similarity=0.110 Sum_probs=128.5
Q ss_pred CcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCC
Q 002209 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGD 728 (953)
Q Consensus 649 g~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~ 728 (953)
+..+....+-+. .|+||++||..... ..+...+...||.|+++| .+|+|.
T Consensus 69 ~~~~~~~~~g~~---------~~~vv~~hG~~~~~------------------~~~~~~~~~lg~~Vi~~D---~~G~G~ 118 (330)
T 3p2m_A 69 AGAISALRWGGS---------APRVIFLHGGGQNA------------------HTWDTVIVGLGEPALAVD---LPGHGH 118 (330)
T ss_dssp ETTEEEEEESSS---------CCSEEEECCTTCCG------------------GGGHHHHHHSCCCEEEEC---CTTSTT
T ss_pred CceEEEEEeCCC---------CCeEEEECCCCCcc------------------chHHHHHHHcCCeEEEEc---CCCCCC
Confidence 345666665321 46799999963211 111223345599999954 467777
Q ss_pred hhhh---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC---------
Q 002209 729 EEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR--------- 796 (953)
Q Consensus 729 ~~~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~--------- 796 (953)
+... .......++|+.++++.+ +.+++.|+||||||.+++.++.++|++++++|++++....
T Consensus 119 S~~~~~~~~~~~~~a~dl~~~l~~l------~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 192 (330)
T 3p2m_A 119 SAWREDGNYSPQLNSETLAPVLREL------APGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTA 192 (330)
T ss_dssp SCCCSSCBCCHHHHHHHHHHHHHHS------STTCCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHh------CCCCcEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCccchhhhhhhh
Confidence 7532 123456667776666554 3468999999999999999999999999999999864220
Q ss_pred CC---CC-----cCcccccch--------hhhhHHHH----Hhc-------------C----------cccccCCCCCcE
Q 002209 797 TL---TP-----FGFQNEDRT--------LWEATSTY----VEM-------------S----------PFMSANKLKKPI 833 (953)
Q Consensus 797 ~~---~~-----~~~~~~~~~--------~~~~~~~~----~~~-------------s----------p~~~~~~i~~P~ 833 (953)
.. .. ..+...... .......+ ... . ....+.++++|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pv 272 (330)
T 3p2m_A 193 EQRGTVALMHGEREFPSFQAMLDLTIAAAPHRDVKSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDALSAPI 272 (330)
T ss_dssp C-----------CCBSCHHHHHHHHHHHCTTSCHHHHHHHHHTTEEECSSSCEEESSCCCSBCCCHHHHHHHHHHCCSCE
T ss_pred hhhhhhhhhcCCccccCHHHHHHHHHhcCCCCCHHHHHHHHHhcccccCCCceEEeechhhCccccHHHHHHHhhCCCCE
Confidence 00 00 000000000 00000000 000 0 012345678999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEE-EEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR-LVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 834 Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
|+++|++|..+| ++.+.++.+.+.. .+ +++++++||... .+..+.+.+.+.+||++
T Consensus 273 Lii~G~~D~~v~--~~~~~~l~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 329 (330)
T 3p2m_A 273 TLVRGGSSGFVT--DQDTAELHRRATH----FRGVHIVEKSGHSVQ-SDQPRALIEIVRGVLDT 329 (330)
T ss_dssp EEEEETTCCSSC--HHHHHHHHHHCSS----EEEEEEETTCCSCHH-HHCHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCC--HHHHHHHHHhCCC----CeeEEEeCCCCCCcc-hhCHHHHHHHHHHHHhc
Confidence 999999999998 8888887776643 46 999999999863 45667777888888753
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-12 Score=139.23 Aligned_cols=304 Identities=10% Similarity=-0.025 Sum_probs=163.3
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCce-eeeecCCCCCcc
Q 002209 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE-IEIQGFPDGAKL 191 (953)
Q Consensus 113 ~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~-~~l~~~~~~~~~ 191 (953)
.++++++++.++....+ +.|++||+.+ ++. +.+. +......
T Consensus 4 g~~~~~~~~~~v~~~~~---------------------------------~~v~~~d~~~----~~~~~~~~-~~~~~~~ 45 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYP---------------------------------NNLHVVDVAS----DTVYKSCV-MPDKFGP 45 (349)
T ss_dssp CCCCCTTCEEEEEEETT---------------------------------TEEEEEETTT----TEEEEEEE-CSSCCSS
T ss_pred cccccCCCEEEEEeCCC---------------------------------CeEEEEECCC----CcEEEEEe-cCCCCCC
Confidence 56788888877666543 3789999843 332 2232 2221147
Q ss_pred cceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc--ccccccceEEecCCeEEEEEecCCCCCC
Q 002209 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY--LNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 192 ~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
..+.|+|||+.+++... ....|+++|+++++.......+... ....+..++|+|||+.|+++.......
T Consensus 46 ~~~~~s~dg~~~~v~~~--------~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~- 116 (349)
T 1jmx_B 46 GTAMMAPDNRTAYVLNN--------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL- 116 (349)
T ss_dssp CEEEECTTSSEEEEEET--------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEEC-
T ss_pred ceeEECCCCCEEEEEeC--------CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccc-
Confidence 78999999998877542 3568999999988765433322100 000145789999999999872110000
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE----eCCCCcccccccCCCCc
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE----IGPPAVYTSLDPSPDEK 344 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~----l~~~~~~~~~~~SpDG~ 344 (953)
....+ .....|+++|+ +++... ...+..+..++|||||+
T Consensus 117 ------------------------------~~~~~------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 117 ------------------------------NDHYV------VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 160 (349)
T ss_dssp ------------------------------SSCEE------ECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred ------------------------------ccccc------cCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc
Confidence 00000 01357889998 754322 22224566778999999
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceEEE-eccCCCcccCCcc---------cccc----ccCccceeeccCC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIA---------FNSV----RKGMRSINWRSDK 410 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~-l~~~~~~~~~p~~---------~~~~----~~~~~~~~wspDg 410 (953)
|++.. .+|++||+.+++... +..... ..+.. .... ...+..+.+++|+
T Consensus 161 -l~~~~---------------~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 222 (349)
T 1jmx_B 161 -LYVAG---------------PDIYKMDVKTGKYTVALPLRNW--NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 222 (349)
T ss_dssp -EEEES---------------SSEEEECTTTCCEEEEECSTTC--CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred -EEEcc---------------CcEEEEeCCCCceecccccccc--CCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence 55432 269999998655443 322110 00000 0000 0001123333333
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee--cccccCCeeecc-CCceEEEEEecccCceEEEEEc
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCD-DSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~--~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~~d 487 (953)
+..... ......++.++. .+++.+.+.. .......+.||| ||+.|+.. . ..|+++|
T Consensus 223 ~~~~~~------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~----~~v~~~d 281 (349)
T 1jmx_B 223 KQDPAT------------ADLLYGYLSVDL---KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--L----NRLAKYD 281 (349)
T ss_dssp ----CC------------CEEEEEEEEEET---TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--E----SEEEEEE
T ss_pred cCCccc------------cccceeEEEEec---cCCcEEecccccCCCcceeeEecCCCCCEEEEE--c----CeEEEEE
Confidence 211000 011223344664 4455444422 233445689999 99988776 1 2789999
Q ss_pred CCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEE
Q 002209 488 PGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (953)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l 567 (953)
+.++ +......... .... +.|+|||++|+.... ...|++||+++++....
T Consensus 282 ~~~~--~~~~~~~~~~-~~~~------~~~s~dg~~l~~~~~---------------------~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 282 LKQR--KLIKAANLDH-TYYC------VAFDKKGDKLYLGGT---------------------FNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp TTTT--EEEEEEECSS-CCCE------EEECSSSSCEEEESB---------------------SSEEEEEETTTTEEEEE
T ss_pred CccC--eEEEEEcCCC-Cccc------eEECCCCCEEEEecC---------------------CCeEEEEeccccceeee
Confidence 8875 3222222111 1111 789999998877431 12499999988875543
Q ss_pred e
Q 002209 568 W 568 (953)
Q Consensus 568 ~ 568 (953)
.
T Consensus 332 ~ 332 (349)
T 1jmx_B 332 I 332 (349)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-12 Score=143.74 Aligned_cols=261 Identities=12% Similarity=0.093 Sum_probs=153.9
Q ss_pred ceEEEEccCCCCCCceeeeecCC---CCCcccceEeccC----CCeEEEEEeeccccCCCCcceEEEEECCCCceeeccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFP---DGAKLNFVTWSQD----GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQ 236 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~---~~~~~~~~~wSPD----G~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~ 236 (953)
.|.+|++.+.. ..+.+..+. ....+....|+|| |+.|+... ....|.++++.+++......
T Consensus 45 ~v~vw~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~---------~dg~i~v~d~~~~~~~~~~~ 112 (366)
T 3k26_A 45 RVTLYECHSQG---EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG---------SRGIIRIINPITMQCIKHYV 112 (366)
T ss_dssp EEEEEEECGGG---CEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE---------TTCEEEEECTTTCCEEEEEE
T ss_pred EEEEEEcCCCc---EEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec---------CCCEEEEEEchhceEeeeec
Confidence 57899985422 222332221 2236888999999 55676644 25689999998887654443
Q ss_pred CCCccccccccceEEec-CCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccce
Q 002209 237 SPDIYLNAIFDNFVWVN-NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQ 315 (953)
Q Consensus 237 ~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 315 (953)
..... +..+.|+| |++.|+... ..+.
T Consensus 113 ~~~~~----i~~~~~~~~~~~~l~s~~-------------------------------------------------~dg~ 139 (366)
T 3k26_A 113 GHGNA----INELKFHPRDPNLLLSVS-------------------------------------------------KDHA 139 (366)
T ss_dssp SCCSC----EEEEEECSSCTTEEEEEE-------------------------------------------------TTSC
T ss_pred CCCCc----EEEEEECCCCCCEEEEEe-------------------------------------------------CCCe
Confidence 22222 77899999 888888661 2246
Q ss_pred EEEEEc-CCceeEeC----CC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEE-ecc----C
Q 002209 316 LVLVSL-DGTVKEIG----PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCD----L 384 (953)
Q Consensus 316 l~~~~~-~g~~~~l~----~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~-l~~----~ 384 (953)
|.++|+ +++..... .. ..+..++|+|||++|+....+ +.|.+||+..+.... +.. .
T Consensus 140 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~~~~ 206 (366)
T 3k26_A 140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD-------------HSLKLWRINSKRMMNAIKESYDYN 206 (366)
T ss_dssp EEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEESCSHHHHHHHHHHHTCC
T ss_pred EEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC-------------CCEEEEECCCCccccccceeEEec
Confidence 778888 66544432 33 778899999999999888744 389999998543221 110 0
Q ss_pred CCcccC---------Cc--cccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC------
Q 002209 385 PLAEDI---------PI--AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG------ 447 (953)
Q Consensus 385 ~~~~~~---------p~--~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~------ 447 (953)
+..... +. ........+..++|+ |+.++.. +..+.+.+|++ ..+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~-------------~~d~~i~~wd~--~~~~~~~~~~~ 269 (366)
T 3k26_A 207 PNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK-------------SCENAIVCWKP--GKMEDDIDKIK 269 (366)
T ss_dssp GGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE-------------CSSSEEEEEEE--SSTTCCGGGCC
T ss_pred CCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE-------------ecCCEEEEEeC--CCccccccccc
Confidence 000000 00 001123345667887 4544433 44567888886 22211
Q ss_pred --------ceEEeecccccCCeeeccC--CceEEEEEecccCceEEEEEcCCCCCCCc--EEeecCC--CccccCCCCCC
Q 002209 448 --------PEILHKLDLRYGGISWCDD--SLALVYESWYKTRRTRTWVISPGSKDVAP--RILFDRS--SEDVYSDPGSP 513 (953)
Q Consensus 448 --------~~~l~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~~l~~~d~~~~~~~~--~~~~~~~--~~~~~~~~~~p 513 (953)
...+..+...+..+.|+|| |+.|+....++ .|+++++.++.... ....... ...+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~----- 340 (366)
T 3k26_A 270 PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG----KLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQ----- 340 (366)
T ss_dssp TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS----CEEEEECCSSSGGGCEEEEECCTTCCSCEEE-----
T ss_pred cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCC----cEEEEECCCCCCccccceEEcccccCCceEE-----
Confidence 1223344556778999999 99888775443 45556665542111 1112222 222333
Q ss_pred CeEeccCCCEEEEEee
Q 002209 514 MMRRTSTGTYVIAKIK 529 (953)
Q Consensus 514 ~~~~SpDG~~l~~~~~ 529 (953)
+.|+|||++|+....
T Consensus 341 -~~~s~~~~~l~s~~~ 355 (366)
T 3k26_A 341 -TSFSRDSSILIAVCD 355 (366)
T ss_dssp -EEECTTSSEEEEEET
T ss_pred -EEeCCCCCeEEEEeC
Confidence 789999999987763
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-12 Score=146.71 Aligned_cols=304 Identities=11% Similarity=0.064 Sum_probs=172.8
Q ss_pred CcccceEecc-CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEec-CCeEEEEEecCCC
Q 002209 189 AKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN-NSTLLVCTIPLLR 266 (953)
Q Consensus 189 ~~~~~~~wSP-DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~ 266 (953)
..+...+|+| +++.||... ....|.+||+++++...+..... ....+..++|+| |++.|+.+.
T Consensus 120 ~~V~~l~~~P~~~~~lasGs---------~dg~i~lWd~~~~~~~~~~~~~g--H~~~V~~l~f~p~~~~~l~s~s---- 184 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGS---------KGGDIMLWNFGIKDKPTFIKGIG--AGGSITGLKFNPLNTNQFYASS---- 184 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEE---------TTSCEEEECSSCCSCCEEECCCS--SSCCCCEEEECSSCTTEEEEEC----
T ss_pred CCEEEEEEeCCCCCEEEEEe---------CCCEEEEEECCCCCceeEEEccC--CCCCEEEEEEeCCCCCEEEEEe----
Confidence 4688899999 456666633 35578888888765433322111 122378999998 677877551
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC----CcccccccCC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----AVYTSLDPSP 341 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~----~~~~~~~~Sp 341 (953)
..+.|.++|+ ++..+.+... ..+..++|+|
T Consensus 185 ---------------------------------------------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (435)
T 4e54_B 185 ---------------------------------------------MEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA 219 (435)
T ss_dssp ---------------------------------------------SSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET
T ss_pred ---------------------------------------------CCCEEEEeeccCCceeEEeccCCCCccEEEEEECC
Confidence 1234566777 5544444332 3456789999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
||+.|+....+ +.|.+||++++....+..+ ...+..++|+|+++.++...
T Consensus 220 ~~~~l~~g~~d-------------g~i~~wd~~~~~~~~~~~h-------------~~~v~~v~~~p~~~~~~~s~---- 269 (435)
T 4e54_B 220 SSRMVVTGDNV-------------GNVILLNMDGKELWNLRMH-------------KKKVTHVALNPCCDWFLATA---- 269 (435)
T ss_dssp TTTEEEEECSS-------------SBEEEEESSSCBCCCSBCC-------------SSCEEEEEECTTCSSEEEEE----
T ss_pred CCCEEEEEeCC-------------CcEeeeccCcceeEEEecc-------------cceEEeeeecCCCceEEEEe----
Confidence 99999887644 3899999987654443322 23456799999998766541
Q ss_pred CCCcccccccCCeEEEEecCCCCCCCceE---EeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEe
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEI---LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g~~~~~---l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 498 (953)
+....|.+||+ ..+..... ...+...+..++|||||++|+..+.++ .|.++++.++. ....+
T Consensus 270 --------s~d~~v~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~----~i~iwd~~~~~-~~~~~ 334 (435)
T 4e54_B 270 --------SVDQTVKIWDL--RQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS----EIRVYSASQWD-CPLGL 334 (435)
T ss_dssp --------ETTSBCCEEET--TTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS----CEEEEESSSSS-SEEEE
T ss_pred --------cCcceeeEEec--ccccccceEEEeeeccccccceeECCCCCeeEEEcCCC----EEEEEECCCCc-cceEE
Confidence 23456778886 22221111 234455677899999999998876554 35555655542 22222
Q ss_pred ecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEec-cCccccee
Q 002209 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE-SDKEKYYE 577 (953)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~-~~~~~~~~ 577 (953)
...... .......-...|+|++..++...... +..++... .+...|++||..+++...... ....
T Consensus 335 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~------~~~~~i~iwd~~~g~~~~~l~~~~~~---- 400 (435)
T 4e54_B 335 IPHPHR-HFQHLTPIKAAWHPRYNLIVVGRYPD---PNFKSCTP------YELRTIDVFDGNSGKMMCQLYDPESS---- 400 (435)
T ss_dssp CCCCCC-CCSSSCCCBCEECSSSSCEEEECCCC---TTSCCSST------TCCCCEEEECSSSCCEEEEECCSSCC----
T ss_pred eccccc-ccccceeEEEEEcCCCCEEEEEEcCC---CCeEEEEe------cCCCEEEEEECCCCcEEEEEeCCCCC----
Confidence 211111 00000111146889988887665321 11111111 112348999998887654332 2211
Q ss_pred eeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002209 578 TTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (953)
Q Consensus 578 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~ 622 (953)
.+..+ ..|+|||+.|+ ..+. ..|++|++.+|+.+
T Consensus 401 ~v~s~------~~fspdg~~la-sg~d----~~i~iW~~~~gk~r 434 (435)
T 4e54_B 401 GISSL------NEFNPMGDTLA-SAMG----YHILIWSQQEARTR 434 (435)
T ss_dssp CCCCE------EEECTTSSCEE-EECS----SEEEECCCC-----
T ss_pred cEEEE------EEECCCCCEEE-EEcC----CcEEEEECCcCeee
Confidence 01111 25899998665 3321 36899998888654
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.5e-13 Score=141.21 Aligned_cols=217 Identities=18% Similarity=0.199 Sum_probs=131.9
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEc
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (953)
.+...+...+|.+++...+-+++ +.|.||++||.+... ..| ......|+ .||.|++
T Consensus 5 ~~~~~~~~~~g~~l~~~~~g~~~-------~~~~vvllHG~~~~~-----------~~~----~~~~~~L~-~~~~vi~- 60 (285)
T 3bwx_A 5 YEDRYWTSSDGLRLHFRAYEGDI-------SRPPVLCLPGLTRNA-----------RDF----EDLATRLA-GDWRVLC- 60 (285)
T ss_dssp SEEEEEECTTSCEEEEEEECBCT-------TSCCEEEECCTTCCG-----------GGG----HHHHHHHB-BTBCEEE-
T ss_pred cccCeeecCCCceEEEEEcCCCC-------CCCcEEEECCCCcch-----------hhH----HHHHHHhh-cCCEEEe-
Confidence 34556777899999888775432 135689999963211 011 12333444 4999999
Q ss_pred CCCCCCCCCChhhh----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC-
Q 002209 719 PTTPIIGEGDEEAN----DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA- 793 (953)
Q Consensus 719 ~~~~~~G~G~~~~~----~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~- 793 (953)
+|.+|+|.+... ........+|+.+.++.+ ..+++.|+||||||.+|+.+|.++|++++++|+.++.
T Consensus 61 --~Dl~G~G~S~~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~ 132 (285)
T 3bwx_A 61 --PEMRGRGDSDYAKDPMTYQPMQYLQDLEALLAQE------GIERFVAIGTSLGGLLTMLLAAANPARIAAAVLNDVGP 132 (285)
T ss_dssp --ECCTTBTTSCCCSSGGGCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCS
T ss_pred --ecCCCCCCCCCCCCccccCHHHHHHHHHHHHHhc------CCCceEEEEeCHHHHHHHHHHHhCchheeEEEEecCCc
Confidence 555688877532 123566678888877765 2358999999999999999999999999999986421
Q ss_pred -CCCC-----------CCCc-C---------------cccccchhhhhHH--HHHh---------cCc-----cc-----
Q 002209 794 -YNRT-----------LTPF-G---------------FQNEDRTLWEATS--TYVE---------MSP-----FM----- 824 (953)
Q Consensus 794 -~d~~-----------~~~~-~---------------~~~~~~~~~~~~~--~~~~---------~sp-----~~----- 824 (953)
.... .... . +.......|.... .+.. ..+ +.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (285)
T 3bwx_A 133 EVSPEGLERIRGYVGQGRNFETWMHAARALQESSGDVYPDWDITQWLRYAKRIMVLGSSGRIAFDYDMKIAEPFEAPVGA 212 (285)
T ss_dssp SCCHHHHHHHHHHTTCCCEESSHHHHHHHHHHHHTTTSTTCCHHHHHHHHHHHEEECTTSCEEESBCGGGGCCTTSCTTC
T ss_pred ccCcchhHHHHHHhcCCcccccHHHHHHHHHHhhhhcccccChHHHHHHHHhhheeCCCCceeeccCHHHHHHHhhhhhc
Confidence 1100 0000 0 0000000011000 0000 000 00
Q ss_pred --------ccCCC-CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 825 --------SANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 825 --------~~~~i-~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
.+.++ ++|+|+++|++|..++ +..+.++.+ . ...++++++++||... .+..+. +..+.+||.
T Consensus 213 ~~~~~~~~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~----~-~~~~~~~i~~~gH~~~-~e~p~~-~~~i~~fl~ 283 (285)
T 3bwx_A 213 TPQVDMWPLFDALATRPLLVLRGETSDILS--AQTAAKMAS----R-PGVELVTLPRIGHAPT-LDEPES-IAAIGRLLE 283 (285)
T ss_dssp CCSSCCHHHHHHHTTSCEEEEEETTCSSSC--HHHHHHHHT----S-TTEEEEEETTCCSCCC-SCSHHH-HHHHHHHHT
T ss_pred cccchhhHHHHHccCCCeEEEEeCCCCccC--HHHHHHHHh----C-CCcEEEEeCCCCccch-hhCchH-HHHHHHHHH
Confidence 01123 7899999999999988 766655543 3 4579999999999864 344444 467888875
Q ss_pred H
Q 002209 896 K 896 (953)
Q Consensus 896 ~ 896 (953)
+
T Consensus 284 ~ 284 (285)
T 3bwx_A 284 R 284 (285)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-13 Score=141.62 Aligned_cols=196 Identities=9% Similarity=-0.019 Sum_probs=123.7
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~ 746 (953)
.|.||++||..... ..| . .....|+++||.|++ .|.+|+|.+.... .......+|+.+.
T Consensus 10 g~~vvllHG~~~~~-----------~~w---~-~~~~~L~~~g~~via---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~ 71 (264)
T 2wfl_A 10 QKHFVLVHGGCLGA-----------WIW---Y-KLKPLLESAGHKVTA---VDLSAAGINPRRLDEIHTFRDYSEPLMEV 71 (264)
T ss_dssp CCEEEEECCTTCCG-----------GGG---T-THHHHHHHTTCEEEE---ECCTTSTTCSCCGGGCCSHHHHHHHHHHH
T ss_pred CCeEEEECCCcccc-----------chH---H-HHHHHHHhCCCEEEE---eecCCCCCCCCCcccccCHHHHHHHHHHH
Confidence 57899999963211 112 1 245567789999999 5556888774321 2356667777776
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC-CC---------------cC------cc
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL-TP---------------FG------FQ 804 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~-~~---------------~~------~~ 804 (953)
++.+ +. .+++.|+||||||.+++.++.++|++++++|++++...... .. +. +.
T Consensus 72 l~~l---~~--~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (264)
T 2wfl_A 72 MASI---PP--DEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYNEKCPADMMLDSQFSTYG 146 (264)
T ss_dssp HHHS---CT--TCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCCCCTTSCTTHHHHHHHHHSCTTTTTTCEEEEES
T ss_pred HHHh---CC--CCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeeccCCCCcchhhHHHHhhhcCcchhhhhhhhhhcc
Confidence 6654 21 25899999999999999999999999999999876421100 00 00 00
Q ss_pred ---c-----ccc-hhhh-------hH--HHHH-h-cCcc----------ccc--C-CCCCcEEEEEeCCCCCCCCchHHH
Q 002209 805 ---N-----EDR-TLWE-------AT--STYV-E-MSPF----------MSA--N-KLKKPILLVHGEEDNNSGTLTMQS 851 (953)
Q Consensus 805 ---~-----~~~-~~~~-------~~--~~~~-~-~sp~----------~~~--~-~i~~P~Li~~G~~D~~v~~~~~~~ 851 (953)
. ... .... .. ..+. . ..+. ... . ..++|+|+++|++|..+| +..+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~ 224 (264)
T 2wfl_A 147 NPENPGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFP--VEFQ 224 (264)
T ss_dssp CTTSCEEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHTTSCCCCTTTGGGSCEEEEEETTCSSSC--HHHH
T ss_pred CCCCCcchhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCcccccccccccccChHHhCCCCeEEEEeCCcCCCC--HHHH
Confidence 0 000 0000 00 0000 0 0110 000 1 135799999999999998 8888
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
+++.+.+.. .++++++++||... .+..+.+.+.+.+|+.
T Consensus 225 ~~~~~~~p~----~~~~~i~~~gH~~~-~e~P~~~~~~l~~f~~ 263 (264)
T 2wfl_A 225 KWFVESVGA----DKVKEIKEADHMGM-LSQPREVCKCLLDISD 263 (264)
T ss_dssp HHHHHHHCC----SEEEEETTCCSCHH-HHSHHHHHHHHHHHHC
T ss_pred HHHHHhCCC----ceEEEeCCCCCchh-hcCHHHHHHHHHHHhh
Confidence 888777743 38899999999863 5667788888888864
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.7e-13 Score=145.51 Aligned_cols=207 Identities=14% Similarity=0.046 Sum_probs=132.8
Q ss_pred cEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCCh
Q 002209 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE 729 (953)
Q Consensus 650 ~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~ 729 (953)
..++....-|.+ +.|.||++||.+.... .| . .....|+++||.|++ .|.+|+|.|
T Consensus 34 ~~l~y~~~G~~~-------~g~~vvllHG~~~~~~-----------~w---~-~~~~~L~~~g~rvia---~Dl~G~G~S 88 (310)
T 1b6g_A 34 LRAHYLDEGNSD-------AEDVFLCLHGEPTWSY-----------LY---R-KMIPVFAESGARVIA---PDFFGFGKS 88 (310)
T ss_dssp CEEEEEEEECTT-------CSCEEEECCCTTCCGG-----------GG---T-TTHHHHHHTTCEEEE---ECCTTSTTS
T ss_pred eEEEEEEeCCCC-------CCCEEEEECCCCCchh-----------hH---H-HHHHHHHhCCCeEEE---eCCCCCCCC
Confidence 788776654421 0367999999642211 12 1 234567888999999 555788888
Q ss_pred hhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC--CC------
Q 002209 730 EAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN--RT------ 797 (953)
Q Consensus 730 ~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d--~~------ 797 (953)
..+. .......+|+.+.++.|. -+++.|+||||||.+++.+|.++|++++++|++++... ..
T Consensus 89 ~~~~~~~~y~~~~~a~dl~~ll~~l~------~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~~~~~~~~~~~~~ 162 (310)
T 1b6g_A 89 DKPVDEEDYTFEFHRNFLLALIERLD------LRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFS 162 (310)
T ss_dssp CEESCGGGCCHHHHHHHHHHHHHHHT------CCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHH
T ss_pred CCCCCcCCcCHHHHHHHHHHHHHHcC------CCCEEEEEcChHHHHHHHHHHhChHhheEEEEeccccccCCccccchh
Confidence 5432 235677788888877762 35899999999999999999999999999999886431 10
Q ss_pred ----CCCcCc---------cccc----------chhh-hhHHHHHh------------------cC-----------ccc
Q 002209 798 ----LTPFGF---------QNED----------RTLW-EATSTYVE------------------MS-----------PFM 824 (953)
Q Consensus 798 ----~~~~~~---------~~~~----------~~~~-~~~~~~~~------------------~s-----------p~~ 824 (953)
.....+ .... .... +..+.|.. .. ...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (310)
T 1b6g_A 163 AFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQAXIDISTEAIS 242 (310)
T ss_dssp HTTTSSTTTHHHHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred hhhhccchHHHHHHHHhccCchhhhhhHHhhcCCCCCHHHHHHHhcccCCccchHHHHHHHHHhcccccchhhhhhhHhh
Confidence 000000 0000 0000 00000000 00 012
Q ss_pred ccC-CCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEe--CCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 825 SAN-KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL--PFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 825 ~~~-~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~--~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
.+. ++++|+|+++|++|..+| ..+.++.+.+... +++++ +++||... . ..+.+.+.+.+||.+
T Consensus 243 ~l~~~i~~P~Lvi~G~~D~~~~---~~~~~~~~~ip~~----~~~~i~~~~~GH~~~-~-~p~~~~~~i~~Fl~~ 308 (310)
T 1b6g_A 243 FWQNDWNGQTFMAIGMKDKLLG---PDVMYPMKALING----CPEPLEIADAGHFVQ-E-FGEQVAREALKHFAE 308 (310)
T ss_dssp HHHHTCCSEEEEEEETTCSSSS---HHHHHHHHHHSTT----CCCCEEETTCCSCGG-G-GHHHHHHHHHHHHHH
T ss_pred hhhccccCceEEEeccCcchhh---hHHHHHHHhcccc----cceeeecCCcccchh-h-ChHHHHHHHHHHHhc
Confidence 345 899999999999999864 5667776666443 44444 99999874 4 778889999999875
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.3e-12 Score=141.98 Aligned_cols=177 Identities=10% Similarity=0.133 Sum_probs=104.4
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..+..++|+|||+.|+.. .+ +.|.+||+. ++....+.... |..+......+..++|+|||
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~d-------------~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~p~~ 238 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-DD-------------LRINLWHLEITDRSFNIVDIK-----PANMEELTEVITAAEFHPNS 238 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-CS-------------SEEEEEETTEEEEEEEEEECC-----CSSGGGCCCCEEEEEECSSC
T ss_pred cceEEEEEcCCCCEEEEe-CC-------------CeEEEEECCCCCceeeeeecc-----cccccccCcceEEEEECCCC
Confidence 678899999999998876 33 389999998 33332221110 11111233456789999999
Q ss_pred -CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC-----ceEEeeccc------------ccCCeeeccCCceEEE
Q 002209 411 -PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-----PEILHKLDL------------RYGGISWCDDSLALVY 472 (953)
Q Consensus 411 -~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~-----~~~l~~~~~------------~~~~~~~SpDg~~l~~ 472 (953)
+.++.. +..+.|.+||+ ..++ ...+..+.. .+..+.|+|||+.|+.
T Consensus 239 ~~~l~s~-------------~~dg~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 302 (447)
T 3dw8_B 239 CNTFVYS-------------SSKGTIRLCDM---RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT 302 (447)
T ss_dssp TTEEEEE-------------ETTSCEEEEET---TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE
T ss_pred CcEEEEE-------------eCCCeEEEEEC---cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE
Confidence 555444 34567899996 3333 244444433 6778999999999887
Q ss_pred EEecccCceEEEEEcCCCCCCCcEEeecCCCcccc------CCC---CCCCeEeccCCCEEEEEeeeccCCCcEEEEecC
Q 002209 473 ESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVY------SDP---GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGN 543 (953)
Q Consensus 473 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~------~~~---~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~ 543 (953)
... + .+.++|+... .+............. ... ....+.|+|||++|+....+
T Consensus 303 ~~~-~----~v~iwd~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d------------- 363 (447)
T 3dw8_B 303 RDY-L----SVKVWDLNME-NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN------------- 363 (447)
T ss_dssp EES-S----EEEEEETTCC-SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST-------------
T ss_pred eeC-C----eEEEEeCCCC-ccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccC-------------
Confidence 654 2 4555565541 122222211110000 000 00016899999999766532
Q ss_pred CCCCCCCCCeEEEEECCCCceEEEecc
Q 002209 544 GATPEGNIPFLDLFDINTGSKERIWES 570 (953)
Q Consensus 544 ~~~~~~~~~~L~~~d~~~~~~~~l~~~ 570 (953)
..|++||+.+++...+...
T Consensus 364 --------g~v~iwd~~~~~~~~~~~~ 382 (447)
T 3dw8_B 364 --------NFFRMFDRNTKRDITLEAS 382 (447)
T ss_dssp --------TEEEEEETTTCCEEEEECC
T ss_pred --------CEEEEEEcCCCcceeeeec
Confidence 2499999999887665433
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-13 Score=146.65 Aligned_cols=212 Identities=12% Similarity=0.062 Sum_probs=126.3
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
+...+|.+++....- ..|+||++||..... ..| ......|++ ||.|+++ +.
T Consensus 17 ~~~~~g~~l~~~~~g----------~~~~vv~lHG~~~~~-----------~~~----~~~~~~l~~-~~~v~~~---D~ 67 (306)
T 3r40_A 17 WINTSSGRIFARVGG----------DGPPLLLLHGFPQTH-----------VMW----HRVAPKLAE-RFKVIVA---DL 67 (306)
T ss_dssp EECCTTCCEEEEEEE----------CSSEEEEECCTTCCG-----------GGG----GGTHHHHHT-TSEEEEE---CC
T ss_pred EEEeCCEEEEEEEcC----------CCCeEEEECCCCCCH-----------HHH----HHHHHHhcc-CCeEEEe---CC
Confidence 334588888766642 147899999964211 112 123445555 9999994 45
Q ss_pred CCCCChhhhh-------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC
Q 002209 724 IGEGDEEAND-------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (953)
Q Consensus 724 ~G~G~~~~~~-------~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~ 796 (953)
+|+|.+.... .......+|+.+.++.+ +.+++.|+||||||.+++.++.++|++++++|++++....
T Consensus 68 ~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 141 (306)
T 3r40_A 68 PGYGWSDMPESDEQHTPYTKRAMAKQLIEAMEQL------GHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPTY 141 (306)
T ss_dssp TTSTTSCCCCCCTTCGGGSHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCHH
T ss_pred CCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHh------CCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCCCCc
Confidence 6777764432 23456666766666553 3458999999999999999999999999999999864210
Q ss_pred CC-------------------CC----------------------cC----cccccchh-------hhhH-------HHH
Q 002209 797 TL-------------------TP----------------------FG----FQNEDRTL-------WEAT-------STY 817 (953)
Q Consensus 797 ~~-------------------~~----------------------~~----~~~~~~~~-------~~~~-------~~~ 817 (953)
.. .. +. ........ +... ..+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (306)
T 3r40_A 142 EYWQRMNRAYALKIYHWSFLAQPAPLPENLLGGDPDFYVKAKLASWTRAGDLSAFDPRAVEHYRIAFADPMRRHVMCEDY 221 (306)
T ss_dssp HHHHHCSHHHHHHSTHHHHHTSCTTHHHHHHTSCHHHHHHHHHHHTSSSSSSTTSCHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhHHHHHhhcccchHHHHHcCCHHHHHHHHhhcccCCCccccCCHHHHHHHHHHHccCCCcchhhHHH
Confidence 00 00 00 00000000 0000 000
Q ss_pred Hhc---------CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHH
Q 002209 818 VEM---------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLW 888 (953)
Q Consensus 818 ~~~---------sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~ 888 (953)
... .....+.++++|+|+++|++|..++ .....+.++.+.. ..+++++ ++||.. ..++.+.+.+
T Consensus 222 ~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~--~~~~~~~~~~~~~---~~~~~~~-~~gH~~-~~e~p~~~~~ 294 (306)
T 3r40_A 222 RAGAYADFEHDKIDVEAGNKIPVPMLALWGASGIAQS--AATPLDVWRKWAS---DVQGAPI-ESGHFL-PEEAPDQTAE 294 (306)
T ss_dssp HHHHTHHHHHHHHHHHHTCCBCSCEEEEEETTCC--------CHHHHHHHBS---SEEEEEE-SSCSCH-HHHSHHHHHH
T ss_pred HhcccccchhhhhhhhhccCCCcceEEEEecCCcccC--chhHHHHHHhhcC---CCeEEEe-cCCcCc-hhhChHHHHH
Confidence 000 0001357889999999999999987 6666655555432 4677777 579975 3566778888
Q ss_pred HHHHHHHHh
Q 002209 889 ETDRWLQKY 897 (953)
Q Consensus 889 ~i~~fl~~~ 897 (953)
.+.+||++.
T Consensus 295 ~i~~fl~~~ 303 (306)
T 3r40_A 295 ALVRFFSAA 303 (306)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhc
Confidence 899998763
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-12 Score=142.68 Aligned_cols=267 Identities=6% Similarity=-0.009 Sum_probs=167.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++|+....+ +.|+||++...........+.. ...
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d---------------------------------~~v~iw~~~~~~~~~~~~~~~~--~~~ 57 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWD---------------------------------GSLTVYKFDIQAKNVDLLQSLR--YKH 57 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETT---------------------------------SEEEEEEEETTTTEEEEEEEEE--CSS
T ss_pred cEEEEEEcCCCCEEEEEcCC---------------------------------CeEEEEEeCCCCccccceeeee--cCC
Confidence 46688999999999988765 3679999854210001333333 234
Q ss_pred cccceEeccCCC-eEEEEEeeccccCCCCcceEEEEEC-CCCceeeccc--CCCccccccccceEEecCCeEEEEEecCC
Q 002209 190 KLNFVTWSQDGK-HLAFSIRIDAEDSSSSKLRVWVADV-DTGKARPLFQ--SPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (953)
Q Consensus 190 ~~~~~~wSPDG~-~laf~~~~~~~~~~~~~~~l~~~d~-~~g~~~~lt~--~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 265 (953)
.+..+.|+|||+ .|+... ....|+++++ ++++...+.. +... +..+.|+| ++.|+...
T Consensus 58 ~v~~~~~~~~~~~~l~~~~---------~dg~i~~wd~~~~~~~~~~~~~~~~~~-----v~~l~~~~-~~~l~s~~--- 119 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGT---------VQGEILKVDLIGSPSFQALTNNEANLG-----ICRICKYG-DDKLIAAS--- 119 (342)
T ss_dssp CEEEEEEEESSSEEEEEEE---------TTSCEEEECSSSSSSEEECBSCCCCSC-----EEEEEEET-TTEEEEEE---
T ss_pred ceEEEEECCCCCcEEEEEc---------CCCeEEEEEeccCCceEeccccCCCCc-----eEEEEeCC-CCEEEEEc---
Confidence 789999999999 888754 2568899999 8888776655 4332 77899999 88887661
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C---------Ccee-EeCCCCcc
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D---------GTVK-EIGPPAVY 334 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~---------g~~~-~l~~~~~~ 334 (953)
..+.|.++|+ + ++.. .+.....+
T Consensus 120 ----------------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 153 (342)
T 1yfq_A 120 ----------------------------------------------WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKI 153 (342)
T ss_dssp ----------------------------------------------TTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCE
T ss_pred ----------------------------------------------CCCeEEEEcccccccccccccCCeeeEEeeCCce
Confidence 2235666666 4 4322 22222677
Q ss_pred cccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ceE--EEeccCCCcccCCccccccccCccceeecc-CC
Q 002209 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFV--RELCDLPLAEDIPIAFNSVRKGMRSINWRS-DK 410 (953)
Q Consensus 335 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~--~~l~~~~~~~~~p~~~~~~~~~~~~~~wsp-Dg 410 (953)
..++|+|++ |+....+ +.|.+||+.. ... ..... . ....+..++|+| ||
T Consensus 154 ~~~~~~~~~--l~~~~~d-------------~~i~i~d~~~~~~~~~~~~~~-~-----------~~~~i~~i~~~~~~~ 206 (342)
T 1yfq_A 154 FTMDTNSSR--LIVGMNN-------------SQVQWFRLPLCEDDNGTIEES-G-----------LKYQIRDVALLPKEQ 206 (342)
T ss_dssp EEEEECSSE--EEEEEST-------------TEEEEEESSCCTTCCCEEEEC-S-----------CSSCEEEEEECSGGG
T ss_pred EEEEecCCc--EEEEeCC-------------CeEEEEECCccccccceeeec-C-----------CCCceeEEEECCCCC
Confidence 889999998 6555533 3899999986 321 11111 0 112346799999 99
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCC-----CCCceEEeeccc---------ccCCeeeccCCceEEEEEec
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ-----GEGPEILHKLDL---------RYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-----g~~~~~l~~~~~---------~~~~~~~SpDg~~l~~~~~~ 476 (953)
+.++.. +..+.+.+|+++. . ......+..+.. .+..+.|+|||+.|+....+
T Consensus 207 ~~l~~~-------------~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 272 (342)
T 1yfq_A 207 EGYACS-------------SIDGRVAVEFFDD-QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272 (342)
T ss_dssp CEEEEE-------------ETTSEEEEEECCT-TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred CEEEEE-------------ecCCcEEEEEEcC-CCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC
Confidence 876665 3455777777511 1 122334443332 66789999999998877644
Q ss_pred ccCceEEEEEcCCCCCCCcEEeecCC-CccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 477 KTRRTRTWVISPGSKDVAPRILFDRS-SEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 477 ~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
+ .|+++|+.++ +........ ...+.. +. |||++|+....+
T Consensus 273 g----~i~vwd~~~~--~~~~~~~~~h~~~v~~------~~--~~~~~l~s~s~D 313 (342)
T 1yfq_A 273 G----IISCWNLQTR--KKIKNFAKFNEDSVVK------IA--CSDNILCLATSD 313 (342)
T ss_dssp S----CEEEEETTTT--EEEEECCCCSSSEEEE------EE--ECSSEEEEEEEC
T ss_pred c----eEEEEcCccH--hHhhhhhcccCCCceE------ec--CCCCeEEEEecC
Confidence 3 4666777664 222222222 222222 33 999999888754
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-12 Score=154.69 Aligned_cols=238 Identities=14% Similarity=0.093 Sum_probs=150.0
Q ss_pred CCCCceecCCC-CEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCC-C-ceeeeecCC
Q 002209 110 PLPALSFSPQR-DKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL-G-QEIEIQGFP 186 (953)
Q Consensus 110 ~~~~~~~SPDG-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~-~-~~~~l~~~~ 186 (953)
.+..++|+||+ +.|+..+.+ +.|.||++..+... + ..+.+.++.
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~D---------------------------------~~i~~W~~~~~~~~~~~~~~~~~~h~ 430 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASRD---------------------------------KSIILWKLTKDDKAYGVAQRRLTGHS 430 (694)
T ss_dssp CEEEEECCTTCCSEEEEEETT---------------------------------SEEEEEECCCSTTCSCEEEEEEECCS
T ss_pred eeEEEEecCCCCCEEEEEeCC---------------------------------CcEEEEEccCCCcccccccceecCCC
Confidence 35677888876 456666554 36799998543221 1 123454433
Q ss_pred CCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 187 ~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
..+....|||||+.|+..+ ....|.++|+.+++..+........ +..++|+|||+.|+...
T Consensus 431 --~~v~~v~~s~~g~~l~sgs---------~Dg~v~vwd~~~~~~~~~~~~h~~~----v~~~~~s~~~~~l~s~s---- 491 (694)
T 3dm0_A 431 --HFVEDVVLSSDGQFALSGS---------WDGELRLWDLAAGVSTRRFVGHTKD----VLSVAFSLDNRQIVSAS---- 491 (694)
T ss_dssp --SCEEEEEECTTSSEEEEEE---------TTSEEEEEETTTTEEEEEEECCSSC----EEEEEECTTSSCEEEEE----
T ss_pred --CcEEEEEECCCCCEEEEEe---------CCCcEEEEECCCCcceeEEeCCCCC----EEEEEEeCCCCEEEEEe----
Confidence 4688999999999998755 2568899999888654433222222 77899999999988662
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCC----C-CcccccccC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP----P-AVYTSLDPS 340 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~----~-~~~~~~~~S 340 (953)
..+.|.++|+ ......+.. . ..+..++|+
T Consensus 492 ---------------------------------------------~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 492 ---------------------------------------------RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS 526 (694)
T ss_dssp ---------------------------------------------TTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred ---------------------------------------------CCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence 1134455565 333333321 1 457789999
Q ss_pred CCCc--EEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEE
Q 002209 341 PDEK--YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (953)
Q Consensus 341 pDG~--~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~ 417 (953)
|++. .|+..+.+ +.|.+||+.+.... .+..+. ..+..++|+|||+.++..
T Consensus 527 ~~~~~~~l~s~s~d-------------~~v~vwd~~~~~~~~~~~~h~-------------~~v~~v~~spdg~~l~sg- 579 (694)
T 3dm0_A 527 PNTLQPTIVSASWD-------------KTVKVWNLSNCKLRSTLAGHT-------------GYVSTVAVSPDGSLCASG- 579 (694)
T ss_dssp SCSSSCEEEEEETT-------------SCEEEEETTTCCEEEEECCCS-------------SCEEEEEECTTSSEEEEE-
T ss_pred CCCCcceEEEEeCC-------------CeEEEEECCCCcEEEEEcCCC-------------CCEEEEEEeCCCCEEEEE-
Confidence 9984 45555533 38999999865443 333321 345679999999876655
Q ss_pred EeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
+..+.|.+||+ ..++..........+..+.||||+..|+.... + .+.++|+.++
T Consensus 580 ------------~~Dg~i~iwd~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~----~i~iwd~~~~ 633 (694)
T 3dm0_A 580 ------------GKDGVVLLWDL---AEGKKLYSLEANSVIHALCFSPNRYWLCAATE-H----GIKIWDLESK 633 (694)
T ss_dssp ------------ETTSBCEEEET---TTTEEEECCBCSSCEEEEEECSSSSEEEEEET-T----EEEEEETTTT
T ss_pred ------------eCCCeEEEEEC---CCCceEEEecCCCcEEEEEEcCCCcEEEEEcC-C----CEEEEECCCC
Confidence 44567889996 33332222233445667899999988776542 2 3555566553
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.8e-13 Score=143.10 Aligned_cols=170 Identities=16% Similarity=0.148 Sum_probs=110.7
Q ss_pred HcCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccE
Q 002209 710 ARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (953)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (953)
+++|.|++ +|.+|+|.+.... .......+|+.+.++.+ +.+++.|+||||||.+++.++.++|+++++
T Consensus 64 ~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvGhS~GG~ia~~~a~~~p~~v~~ 134 (289)
T 1u2e_A 64 EAGYRVIL---LDCPGWGKSDSVVNSGSRSDLNARILKSVVDQL------DIAKIHLLGNSMGGHSSVAFTLKWPERVGK 134 (289)
T ss_dssp HTTCEEEE---ECCTTSTTSCCCCCSSCHHHHHHHHHHHHHHHT------TCCCEEEEEETHHHHHHHHHHHHCGGGEEE
T ss_pred hcCCeEEE---EcCCCCCCCCCCCccccCHHHHHHHHHHHHHHh------CCCceEEEEECHhHHHHHHHHHHCHHhhhE
Confidence 45599999 4556788775432 22344455555554432 246899999999999999999999999999
Q ss_pred EEEcccCCCCC--CCCcC---------------------------ccccc--chh----hh----hHHHHH----h----
Q 002209 787 GIARSGAYNRT--LTPFG---------------------------FQNED--RTL----WE----ATSTYV----E---- 819 (953)
Q Consensus 787 ~v~~~~~~d~~--~~~~~---------------------------~~~~~--~~~----~~----~~~~~~----~---- 819 (953)
+|++++..... ..... +.... ... +. .+..+. .
T Consensus 135 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (289)
T 1u2e_A 135 LVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLTDALFEARLNNMLSRRDHLENFVKSLEAN 214 (289)
T ss_dssp EEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHTTSSCTTSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred EEEECCCccccccccccchhhHHHHHHHHhcchHHHHHHHHHHhhcCcccCCHHHHHHHHHHhhcChhHHHHHHHHHHhc
Confidence 99988754210 00000 00000 000 00 001010 0
Q ss_pred ----cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 820 ----MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 820 ----~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
.+....+.++++|+|+++|++|..+| ++.++++.+.+.. .++++++++||... .+..+.+.+.+.+||.
T Consensus 215 ~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~~----~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 287 (289)
T 1u2e_A 215 PKQFPDFGPRLAEIKAQTLIVWGRNDRFVP--MDAGLRLLSGIAG----SELHIFRDCGHWAQ-WEHADAFNQLVLNFLA 287 (289)
T ss_dssp SCCSCCCGGGGGGCCSCEEEEEETTCSSSC--THHHHHHHHHSTT----CEEEEESSCCSCHH-HHTHHHHHHHHHHHHT
T ss_pred cccccchhhHHhhcCCCeEEEeeCCCCccC--HHHHHHHHhhCCC----cEEEEeCCCCCchh-hcCHHHHHHHHHHHhc
Confidence 01223567789999999999999998 8888888777643 48899999999753 4556677778888874
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-13 Score=142.05 Aligned_cols=199 Identities=10% Similarity=0.012 Sum_probs=126.2
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~ 746 (953)
.|.||++||.+... ..| . .....|+++||.|++ .|.+|+|.+.... .......+|+.+.
T Consensus 4 ~~~vvllHG~~~~~-----------~~w---~-~~~~~L~~~g~rVia---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~ 65 (273)
T 1xkl_A 4 GKHFVLVHGACHGG-----------WSW---Y-KLKPLLEAAGHKVTA---LDLAASGTDLRKIEELRTLYDYTLPLMEL 65 (273)
T ss_dssp CCEEEEECCTTCCG-----------GGG---T-THHHHHHHTTCEEEE---CCCTTSTTCCCCGGGCCSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCc-----------chH---H-HHHHHHHhCCCEEEE---ecCCCCCCCccCcccccCHHHHHHHHHHH
Confidence 36799999963211 112 1 245567789999999 5667888874321 2355666666665
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC-C------------C---cC------cc
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL-T------------P---FG------FQ 804 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~-~------------~---~~------~~ 804 (953)
++.+ +. .+++.|+||||||.+++.++.++|++++++|++++...... . . +. +.
T Consensus 66 l~~l---~~--~~~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (273)
T 1xkl_A 66 MESL---SA--DEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYG 140 (273)
T ss_dssp HHTS---CS--SSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECS
T ss_pred HHHh---cc--CCCEEEEecCHHHHHHHHHHHhChHhheEEEEEeccCCCCCCcHHHHHHHhhccCChhhHHHHHHhhcc
Confidence 5443 21 25899999999999999999999999999999876421100 0 0 00 00
Q ss_pred ---c--c---cchhh-h-------hH--HHHH-h-cCccc----------cc---CCCCCcEEEEEeCCCCCCCCchHHH
Q 002209 805 ---N--E---DRTLW-E-------AT--STYV-E-MSPFM----------SA---NKLKKPILLVHGEEDNNSGTLTMQS 851 (953)
Q Consensus 805 ---~--~---~~~~~-~-------~~--~~~~-~-~sp~~----------~~---~~i~~P~Li~~G~~D~~v~~~~~~~ 851 (953)
. . ....+ . .. ..+. . ..+.. .. ...++|+|+++|++|..+| +..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p--~~~~ 218 (273)
T 1xkl_A 141 SPEEPLTSMFFGPKFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIP--EEFQ 218 (273)
T ss_dssp CTTSCCEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTT--HHHH
T ss_pred CCCCCccccccCHHHHHHHhhccCCHHHHHHHHHhcCCCchhhhhhhcccccchhhhCCCCeEEEEeCCccCCC--HHHH
Confidence 0 0 00000 0 00 0000 0 01100 00 1136799999999999998 8888
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
+++.+.+.. .+++++|++||... .+..+.+.+.+.+|+.+..
T Consensus 219 ~~~~~~~p~----~~~~~i~~aGH~~~-~e~P~~~~~~i~~fl~~~~ 260 (273)
T 1xkl_A 219 RWQIDNIGV----TEAIEIKGADHMAM-LCEPQKLCASLLEIAHKYN 260 (273)
T ss_dssp HHHHHHHCC----SEEEEETTCCSCHH-HHSHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCC----CeEEEeCCCCCCch-hcCHHHHHHHHHHHHHHhc
Confidence 888777643 38899999999863 5667888899999998754
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=145.46 Aligned_cols=194 Identities=11% Similarity=0.132 Sum_probs=123.3
Q ss_pred cEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhh---hHHHHHHHHHHHH
Q 002209 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR---FVEQLVACAEAAV 747 (953)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~---~~~~~~~D~~~~~ 747 (953)
|.||++||.+... ..|. .....|++ +|.|++ +|.+|+|.+..... .....++|+.+.+
T Consensus 17 ~~vvllHG~~~~~-----------~~~~----~~~~~L~~-~~~vi~---~Dl~G~G~S~~~~~~~~~~~~~~~dl~~~l 77 (269)
T 2xmz_A 17 QVLVFLHGFLSDS-----------RTYH----NHIEKFTD-NYHVIT---IDLPGHGEDQSSMDETWNFDYITTLLDRIL 77 (269)
T ss_dssp EEEEEECCTTCCG-----------GGGT----TTHHHHHT-TSEEEE---ECCTTSTTCCCCTTSCCCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCcH-----------HHHH----HHHHHHhh-cCeEEE---ecCCCCCCCCCCCCCccCHHHHHHHHHHHH
Confidence 4599999964221 1121 22344554 599999 55568888755322 3566677777666
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC---------------------------
Q 002209 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP--------------------------- 800 (953)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~--------------------------- 800 (953)
+.+ +.+++.|+||||||.+|+.++.++|++++++|++++........
T Consensus 78 ~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (269)
T 2xmz_A 78 DKY------KDKSITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIKEEANQLERRLVDDARAKVLDIAGIELFVND 151 (269)
T ss_dssp GGG------TTSEEEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCSCCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHc------CCCcEEEEEECchHHHHHHHHHhCchheeeeEEEcCCcccCCchhHHHHhhhhhHHHHhhccccHHHHHHH
Confidence 553 24689999999999999999999999999999998753321000
Q ss_pred cC----cccc---cc----hhhh-----hHH----HHHh------cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHH
Q 002209 801 FG----FQNE---DR----TLWE-----ATS----TYVE------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (953)
Q Consensus 801 ~~----~~~~---~~----~~~~-----~~~----~~~~------~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~ 854 (953)
+. +... .. ..+. ... .+.. .+....+.++++|+|+++|++|..++ .... ++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~-~~ 228 (269)
T 2xmz_A 152 WEKLPLFQSQLELPVEIQHQIRQQRLSQSPHKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEYDEKFV--QIAK-KM 228 (269)
T ss_dssp HTTSGGGGGGGGSCHHHHHHHHHHHHTSCHHHHHHHHHHHSTTTSCCCGGGGGGCCSCEEEEEETTCHHHH--HHHH-HH
T ss_pred HHhCccccccccCCHHHHHHHHHHHhccCcHHHHHHHHHHHhccCccHHHHHHhcCCCEEEEEeCCCcccC--HHHH-HH
Confidence 00 0000 00 0000 000 0100 01123466789999999999999876 5543 34
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 855 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
.+.+ ...++++++++||... .+..+.+.+.+.+||.+.
T Consensus 229 ~~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 266 (269)
T 2xmz_A 229 ANLI----PNSKCKLISATGHTIH-VEDSDEFDTMILGFLKEE 266 (269)
T ss_dssp HHHS----TTEEEEEETTCCSCHH-HHSHHHHHHHHHHHHHHH
T ss_pred HhhC----CCcEEEEeCCCCCChh-hcCHHHHHHHHHHHHHHh
Confidence 4433 2479999999999864 456778888999999764
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-13 Score=133.34 Aligned_cols=127 Identities=14% Similarity=0.105 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHH
Q 002209 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATST 816 (953)
Q Consensus 737 ~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 816 (953)
...++|+.++++.+ + +++.++||||||.+++.++.++|++++++|+++|...... .+
T Consensus 59 ~~~~~~~~~~~~~~------~-~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~---~~------------- 115 (191)
T 3bdv_A 59 DRWVLAIRRELSVC------T-QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRF---EI------------- 115 (191)
T ss_dssp HHHHHHHHHHHHTC------S-SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGG---TC-------------
T ss_pred HHHHHHHHHHHHhc------C-CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCccccc---cC-------------
Confidence 44555555554432 3 6899999999999999999999999999999998643210 00
Q ss_pred HHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc--cHHHHHHHHHHHH
Q 002209 817 YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE--SIMHVLWETDRWL 894 (953)
Q Consensus 817 ~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~--~~~~~~~~i~~fl 894 (953)
.+...+.++++|+|+++|++|..+| ++.++++.+.+ ..++++++++||...... ...+.++.+.+||
T Consensus 116 ----~~~~~~~~~~~P~lii~g~~D~~~~--~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl 184 (191)
T 3bdv_A 116 ----DDRIQASPLSVPTLTFASHNDPLMS--FTRAQYWAQAW-----DSELVDVGEAGHINAEAGFGPWEYGLKRLAEFS 184 (191)
T ss_dssp ----TTTSCSSCCSSCEEEEECSSBTTBC--HHHHHHHHHHH-----TCEEEECCSCTTSSGGGTCSSCHHHHHHHHHHH
T ss_pred ----ccccccccCCCCEEEEecCCCCcCC--HHHHHHHHHhc-----CCcEEEeCCCCcccccccchhHHHHHHHHHHHH
Confidence 0113456788999999999999998 89888888876 258999999999874321 3344557788888
Q ss_pred HHh
Q 002209 895 QKY 897 (953)
Q Consensus 895 ~~~ 897 (953)
++.
T Consensus 185 ~~~ 187 (191)
T 3bdv_A 185 EIL 187 (191)
T ss_dssp HTT
T ss_pred HHh
Confidence 764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-12 Score=150.96 Aligned_cols=176 Identities=9% Similarity=0.003 Sum_probs=109.8
Q ss_pred CCCceecC--CCCEEEEEecCCCCCccccccc-----------------cceeceEEecCCCCCCcceeee----eceEE
Q 002209 111 LPALSFSP--QRDKILFLKRRALPPLEELARP-----------------EEKLAGLRIDGKCNTRSRMSFY----TGIGI 167 (953)
Q Consensus 111 ~~~~~~SP--DG~~la~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~----~~i~i 167 (953)
+..++||| ||++||....++...++++... ......+.+++++......... ..|++
T Consensus 67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~ 146 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS 146 (615)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE
T ss_pred EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEE
Confidence 67889999 9999999887755555655321 1123345666665433222221 35677
Q ss_pred EEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccccccc
Q 002209 168 HQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFD 247 (953)
Q Consensus 168 ~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~ 247 (953)
|+. + .....+.. ....+....|+|||+.++++.. ....|.++|+.+++.......... ....+.
T Consensus 147 ~d~---~--~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~--------~d~~v~vwd~~~~~~~~~~~~~~~-~~~~v~ 210 (615)
T 1pgu_A 147 WDS---G--NSLGEVSG--HSQRINACHLKQSRPMRSMTVG--------DDGSVVFYQGPPFKFSASDRTHHK-QGSFVR 210 (615)
T ss_dssp TTT---C--CEEEECCS--CSSCEEEEEECSSSSCEEEEEE--------TTTEEEEEETTTBEEEEEECSSSC-TTCCEE
T ss_pred EEC---C--Ccceeeec--CCccEEEEEECCCCCcEEEEEe--------CCCcEEEEeCCCcceeeeecccCC-CCceEE
Confidence 663 1 23333332 2247889999999985444332 356888889888765543332222 000277
Q ss_pred ceEEecC-CeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce
Q 002209 248 NFVWVNN-STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV 325 (953)
Q Consensus 248 ~~~wspD-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~ 325 (953)
.++|+|| |+.|+... ..+.|.++|+ +++.
T Consensus 211 ~~~~~~~~~~~l~~~~-------------------------------------------------~dg~i~vwd~~~~~~ 241 (615)
T 1pgu_A 211 DVEFSPDSGEFVITVG-------------------------------------------------SDRKISCFDGKSGEF 241 (615)
T ss_dssp EEEECSTTCCEEEEEE-------------------------------------------------TTCCEEEEETTTCCE
T ss_pred EEEECCCCCCEEEEEe-------------------------------------------------CCCeEEEEECCCCCE
Confidence 8999999 99888661 2246778888 6654
Q ss_pred e-Ee-C---CC-CcccccccCCCCcEEEEEEec
Q 002209 326 K-EI-G---PP-AVYTSLDPSPDEKYILISSIH 352 (953)
Q Consensus 326 ~-~l-~---~~-~~~~~~~~SpDG~~l~~~~~~ 352 (953)
. .+ . .. ..+..+.|+ ||++|+..+.+
T Consensus 242 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d 273 (615)
T 1pgu_A 242 LKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD 273 (615)
T ss_dssp EEECCBTTBCCCSCEEEEEES-SSSEEEEEETT
T ss_pred eEEecccccccCCceEEEEEc-CCCEEEEEcCC
Confidence 3 34 1 33 778889999 99999888744
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=146.29 Aligned_cols=209 Identities=8% Similarity=-0.073 Sum_probs=132.7
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCC
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (953)
..+|.+++...+- +.|+||++||.+.... .|.. ....|+ .+|.|+++| .+|
T Consensus 14 ~~~g~~l~~~~~g----------~~~~vv~lHG~~~~~~-----------~~~~----~~~~l~-~~~~vi~~D---~~G 64 (297)
T 2qvb_A 14 EIAGKRMAYIDEG----------KGDAIVFQHGNPTSSY-----------LWRN----IMPHLE-GLGRLVACD---LIG 64 (297)
T ss_dssp EETTEEEEEEEES----------SSSEEEEECCTTCCGG-----------GGTT----TGGGGT-TSSEEEEEC---CTT
T ss_pred EECCEEEEEEecC----------CCCeEEEECCCCchHH-----------HHHH----HHHHHh-hcCeEEEEc---CCC
Confidence 3478888766552 1478999999642211 1211 122333 459999954 467
Q ss_pred CCChhhhh------hhHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC
Q 002209 726 EGDEEAND------RFVEQLVACAEAAVEEVVRRGVAHP-SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (953)
Q Consensus 726 ~G~~~~~~------~~~~~~~~D~~~~~~~l~~~~~~d~-~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~ 798 (953)
+|.+.... ......++|+.++++.+ +. +++.++||||||.+++.++.++|++++++|++++......
T Consensus 65 ~G~S~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~ 138 (297)
T 2qvb_A 65 MGASDKLSPSGPDRYSYGEQRDFLFALWDAL------DLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVTPMT 138 (297)
T ss_dssp STTSCCCSSCSTTSSCHHHHHHHHHHHHHHT------TCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCSCBC
T ss_pred CCCCCCCCCccccCcCHHHHHHHHHHHHHHc------CCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccCCcc
Confidence 77764432 23566677777776654 23 6899999999999999999999999999999998653110
Q ss_pred CC-cC--c---------c----------------------cccc---------------hhhhhH-HHHHhc--------
Q 002209 799 TP-FG--F---------Q----------------------NEDR---------------TLWEAT-STYVEM-------- 820 (953)
Q Consensus 799 ~~-~~--~---------~----------------------~~~~---------------~~~~~~-~~~~~~-------- 820 (953)
.. .. . . .... ...... ..+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (297)
T 2qvb_A 139 WADWPPAVRGVFQGFRSPQGEPMALEHNIFVERVLPGAILRQLSDEEMNHYRRPFVNGGEDRRPTLSWPRNLPIDGEPAE 218 (297)
T ss_dssp GGGSCGGGHHHHHHHTSTTHHHHHHTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHHSCBTTBSHH
T ss_pred CCCCChHHHHHHHHHhcccchhhhccccHHHHHHHhccccccCCHHHHHHHHHHhcCcccchhhHHHHHHhccccCCchh
Confidence 00 00 0 0 0000 000000 000000
Q ss_pred ------CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 821 ------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 821 ------sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
+....+.++++|+|+++|++|..+| ++.+.++.+.+ .. +++++ ++||... .++...+.+.+.+||
T Consensus 219 ~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~----~~-~~~~~-~~gH~~~-~~~p~~~~~~i~~fl 289 (297)
T 2qvb_A 219 VVALVNEYRSWLEETDMPKLFINAEPGAIIT--GRIRDYVRSWP----NQ-TEITV-PGVHFVQ-EDSPEEIGAAIAQFV 289 (297)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHTSS----SE-EEEEE-EESSCGG-GTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhcccccccEEEEecCCCCcCC--HHHHHHHHHHc----CC-eEEEe-cCccchh-hhCHHHHHHHHHHHH
Confidence 1123345689999999999999998 77776665544 23 78888 9999864 566788899999999
Q ss_pred HHhc
Q 002209 895 QKYC 898 (953)
Q Consensus 895 ~~~l 898 (953)
++..
T Consensus 290 ~~~~ 293 (297)
T 2qvb_A 290 RRLR 293 (297)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-11 Score=141.49 Aligned_cols=214 Identities=7% Similarity=-0.011 Sum_probs=124.0
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEE--eccCCCcccCCccccccccCccceeeccC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE--LCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~--l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
..+..++|||||++|++...+ +.+++|++..+.... +.. +.+....+..++|+||
T Consensus 150 ~~v~~~~~sp~~~~l~~~~~~-------------g~v~~~~~~~~~~~~~~~~~----------~~~h~~~v~~~~~sp~ 206 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIADKF-------------GDVYSIDINSIPEEKFTQEP----------ILGHVSMLTDVHLIKD 206 (450)
T ss_dssp SCEEEEEECTTSSEEEEEETT-------------SEEEEEETTSCCCSSCCCCC----------SEECSSCEEEEEEEEC
T ss_pred CCceEEEEcCCCCEEEEEeCC-------------CcEEEEecCCccccccccee----------eecccCceEEEEEcCC
Confidence 667889999999999988733 379999987543221 001 0112234567999999
Q ss_pred ---CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE-EeecccccCCeeeccCCceEEEEEecccCceEEEE
Q 002209 410 ---KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (953)
Q Consensus 410 ---g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~-l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 485 (953)
|+.|+.. +..+.|++|++ .++..... +..+...+..+.|+ ||+.|+..+.++ .|.+
T Consensus 207 ~~~~~~l~s~-------------~~d~~i~vwd~--~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~----~v~v 266 (450)
T 2vdu_B 207 SDGHQFIITS-------------DRDEHIKISHY--PQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDD----KIFA 266 (450)
T ss_dssp TTSCEEEEEE-------------ETTSCEEEEEE--SCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSS----EEEE
T ss_pred CCCCcEEEEE-------------cCCCcEEEEEC--CCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCC----eEEE
Confidence 7766554 34567889996 23333333 33556677889999 999998876443 5667
Q ss_pred EcCCCCCCCcEEeecCCC--ccc-----------------cCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCC
Q 002209 486 ISPGSKDVAPRILFDRSS--EDV-----------------YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGAT 546 (953)
Q Consensus 486 ~d~~~~~~~~~~~~~~~~--~~~-----------------~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (953)
+|+.++ +......... ... .....--.+.|+|||++|+.....
T Consensus 267 wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~---------------- 328 (450)
T 2vdu_B 267 WDWKTG--KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA---------------- 328 (450)
T ss_dssp EETTTC--CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT----------------
T ss_pred EECCCC--cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC----------------
Confidence 777765 2222221100 000 000000016789999988877611
Q ss_pred CCCCCCeEEEEEC--CCC-ceEEE--eccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCc------eEEEEE
Q 002209 547 PEGNIPFLDLFDI--NTG-SKERI--WESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENT------QYYIQS 615 (953)
Q Consensus 547 ~~~~~~~L~~~d~--~~~-~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~------~l~~~~ 615 (953)
...|++|++ .++ +...+ ....+. +. ..+|+++ .+++...+...|. .+|.++
T Consensus 329 ----d~~i~iw~~~~~~~~~l~~~~~~~~~~~-----v~-------~~~~~~~--~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 329 ----TKCIIILEMSEKQKGDLALKQIITFPYN-----VI-------SLSAHND--EFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp ----CSEEEEEEECSSSTTCEEEEEEEECSSC-----EE-------EEEEETT--EEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred ----CCeEEEEEeccCCCCceeeccEeccCCc-----eE-------EEEecCC--cEEEEEecccCCCCCCcceEEEEEE
Confidence 124888888 443 22222 222211 11 1356663 4666666655554 788888
Q ss_pred CCCCCeeEEe
Q 002209 616 WPDKKSCQIT 625 (953)
Q Consensus 616 ~~~g~~~~Lt 625 (953)
..+++.+ ++
T Consensus 391 ~~~~~~~-~~ 399 (450)
T 2vdu_B 391 LNENSFV-VN 399 (450)
T ss_dssp TTTTEEE-EC
T ss_pred cCCCeEE-Ec
Confidence 7777654 56
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.48 E-value=8e-13 Score=141.94 Aligned_cols=208 Identities=12% Similarity=0.061 Sum_probs=130.7
Q ss_pred cEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCCh
Q 002209 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE 729 (953)
Q Consensus 650 ~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~ 729 (953)
.+++....-|.+ ..|.||++||.+... ..| . .....|+++||.|++ .|.+|+|.|
T Consensus 33 ~~l~y~~~G~~~-------~g~~vvllHG~~~~~-----------~~w---~-~~~~~L~~~g~rvia---~Dl~G~G~S 87 (297)
T 2xt0_A 33 LRMHYVDEGPRD-------AEHTFLCLHGEPSWS-----------FLY---R-KMLPVFTAAGGRVVA---PDLFGFGRS 87 (297)
T ss_dssp CCEEEEEESCTT-------CSCEEEEECCTTCCG-----------GGG---T-TTHHHHHHTTCEEEE---ECCTTSTTS
T ss_pred eEEEEEEccCCC-------CCCeEEEECCCCCcc-----------eeH---H-HHHHHHHhCCcEEEE---eCCCCCCCC
Confidence 778776654321 136799999964221 112 1 234567888999999 555788887
Q ss_pred hhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC-CcCc-
Q 002209 730 EAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-PFGF- 803 (953)
Q Consensus 730 ~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~-~~~~- 803 (953)
..+. .......+|+.+.++.+. .+++.|+||||||.+++.+|.++|++++++|++++....... ...+
T Consensus 88 ~~~~~~~~~~~~~~a~dl~~ll~~l~------~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~ 161 (297)
T 2xt0_A 88 DKPTDDAVYTFGFHRRSLLAFLDALQ------LERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTALAVGLSPGKGFE 161 (297)
T ss_dssp CEESCGGGCCHHHHHHHHHHHHHHHT------CCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCCCCSSSCSCHHHH
T ss_pred CCCCCcccCCHHHHHHHHHHHHHHhC------CCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCCCCcccCCchhHH
Confidence 5432 235677788877777652 358999999999999999999999999999998874311100 0000
Q ss_pred ---------cccc---------chh-hhhHHHHH-------------hc---C--------------cccccC-CCCCcE
Q 002209 804 ---------QNED---------RTL-WEATSTYV-------------EM---S--------------PFMSAN-KLKKPI 833 (953)
Q Consensus 804 ---------~~~~---------~~~-~~~~~~~~-------------~~---s--------------p~~~~~-~i~~P~ 833 (953)
.... ... .+....|. .+ . ....+. ++++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~ 241 (297)
T 2xt0_A 162 SWRDFVANSPDLDVGKLMQRAIPGITDAEVAAYDAPFPGPEFKAGVRRFPAIVPITPDMEGAEIGRQAMSFWSTQWSGPT 241 (297)
T ss_dssp HHHHHHHTCTTCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHGGGGSCCSTTSTTHHHHHHHHHHHHHTCCSCE
T ss_pred HHHHHhhcccccchhHHHhccCccCCHHHHHHHhccccCcchhHHHHHHHHhCccccccchhhHHHHHHHHhhhccCCCe
Confidence 0000 000 00000010 00 0 011235 889999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 834 Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
|+++|++|..+| ..+.++.+.+... ....+.++++||... . ..+.+.+.+.+||.
T Consensus 242 Lvi~G~~D~~~~---~~~~~~~~~~p~~--~~~~~~~~~~GH~~~-~-~p~~~~~~i~~fl~ 296 (297)
T 2xt0_A 242 FMAVGAQDPVLG---PEVMGMLRQAIRG--CPEPMIVEAGGHFVQ-E-HGEPIARAALAAFG 296 (297)
T ss_dssp EEEEETTCSSSS---HHHHHHHHHHSTT--CCCCEEETTCCSSGG-G-GCHHHHHHHHHHTT
T ss_pred EEEEeCCCcccC---hHHHHHHHhCCCC--eeEEeccCCCCcCcc-c-CHHHHHHHHHHHHh
Confidence 999999999864 5567777666433 233344799999875 4 66778888888864
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.1e-13 Score=140.72 Aligned_cols=197 Identities=13% Similarity=0.074 Sum_probs=120.9
Q ss_pred CccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh--hhHHHHHHHHHHH
Q 002209 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAA 746 (953)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~~ 746 (953)
+.|+||++||+... ...| ......| +.+|.|+.+| .+|+|.+.... ......++|+.++
T Consensus 19 ~~~~vv~~HG~~~~-----------~~~~----~~~~~~l-~~~~~v~~~d---~~G~G~s~~~~~~~~~~~~~~~~~~~ 79 (267)
T 3fla_A 19 ARARLVCLPHAGGS-----------ASFF----FPLAKAL-APAVEVLAVQ---YPGRQDRRHEPPVDSIGGLTNRLLEV 79 (267)
T ss_dssp CSEEEEEECCTTCC-----------GGGG----HHHHHHH-TTTEEEEEEC---CTTSGGGTTSCCCCSHHHHHHHHHHH
T ss_pred CCceEEEeCCCCCC-----------chhH----HHHHHHh-ccCcEEEEec---CCCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 47899999996311 0111 1233344 4459999954 46777764322 2345556665555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc----ccEEEEcccCCCCCCCCcCccccc-----------c---
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL----FCCGIARSGAYNRTLTPFGFQNED-----------R--- 808 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~~~~d~~~~~~~~~~~~-----------~--- 808 (953)
++.+ +.+++.|+||||||.+++.++.++|++ ++++++.++............... .
T Consensus 80 l~~~------~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (267)
T 3fla_A 80 LRPF------GDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDDDVRGASDERLVAELRKLGGSD 153 (267)
T ss_dssp TGGG------TTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCCSCTTCCCHHHHHHHHHHTCHHH
T ss_pred HHhc------CCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccchhhcccchHHHHHHHHHhcCcc
Confidence 5443 346899999999999999999999986 888888876533211100000000 0
Q ss_pred -hhhh--------------hHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002209 809 -TLWE--------------ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (953)
Q Consensus 809 -~~~~--------------~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (953)
.... ....+..+.+... .++++|+|+++|++|..+| +....++.+.+.. +++++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~---~~~~~~~~g- 226 (267)
T 3fla_A 154 AAMLADPELLAMVLPAIRSDYRAVETYRHEPG-RRVDCPVTVFTGDHDPRVS--VGEARAWEEHTTG---PADLRVLPG- 226 (267)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHCCCCTT-CCBSSCEEEEEETTCTTCC--HHHHHGGGGGBSS---CEEEEEESS-
T ss_pred hhhccCHHHHHHHHHHHHHHHHhhhccccccc-CcCCCCEEEEecCCCCCCC--HHHHHHHHHhcCC---CceEEEecC-
Confidence 0000 0011112222111 5788999999999999998 8777776655533 489999999
Q ss_pred CccCCCcccHHHHHHHHHHHHHHhc
Q 002209 874 SHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 874 ~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
||... .++...+.+.+.+||++..
T Consensus 227 gH~~~-~~~~~~~~~~i~~fl~~~~ 250 (267)
T 3fla_A 227 GHFFL-VDQAAPMIATMTEKLAGPA 250 (267)
T ss_dssp STTHH-HHTHHHHHHHHHHHTC---
T ss_pred Cceee-ccCHHHHHHHHHHHhcccc
Confidence 99864 4556677777788877654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-12 Score=140.41 Aligned_cols=302 Identities=8% Similarity=0.000 Sum_probs=173.1
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecC---CeEEEEEecCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN---STLLVCTIPLL 265 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD---g~~l~~~~~~~ 265 (953)
..+....|+|||+.++.+... ..+...|.++++++++...+...+. ...+..++|+|+ |+.|+...
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~-----~~~d~~v~iw~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~l~~~~--- 87 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNF-----ARGTGVIQLYEIQHGDLKLLREIEK---AKPIKCGTFGATSLQQRYLATGD--- 87 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC-------CCCEEEEEEEECSSSEEEEEEEEE---SSCEEEEECTTCCTTTCCEEEEE---
T ss_pred CceEEEEEcCCCceEEEecCc-----cCCCcEEEEEeCCCCcccceeeecc---cCcEEEEEEcCCCCCCceEEEec---
Confidence 468899999999888876531 1125678888888887654432111 112778999999 68887661
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc--eeEeCCC-Cccccc----
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGPP-AVYTSL---- 337 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~--~~~l~~~-~~~~~~---- 337 (953)
..+.|.++++ +++ ...+... ..+..+
T Consensus 88 ----------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 121 (357)
T 3i2n_A 88 ----------------------------------------------FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIG 121 (357)
T ss_dssp ----------------------------------------------TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEES
T ss_pred ----------------------------------------------CCCeEEEEeCCCCCccEEEEEecccceEEEeecc
Confidence 2245667777 543 4444433 445555
Q ss_pred --ccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce--EEEeccCCCcccCCccccccccCcccee----eccC
Q 002209 338 --DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSIN----WRSD 409 (953)
Q Consensus 338 --~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~--~~~l~~~~~~~~~p~~~~~~~~~~~~~~----wspD 409 (953)
+|||||+.|+..+.+ +.|.+||+..+. ...+........ ..+..+. |+||
T Consensus 122 ~~~~s~~~~~l~~~~~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~ 179 (357)
T 3i2n_A 122 GLGIGEGAPEIVTGSRD-------------GTVKVWDPRQKDDPVANMEPVQGENK---------RDCWTVAFGNAYNQE 179 (357)
T ss_dssp GGGCC-CCCEEEEEETT-------------SCEEEECTTSCSSCSEEECCCTTSCC---------CCEEEEEEECCCC-C
T ss_pred ccccCCCccEEEEEeCC-------------CeEEEEeCCCCCCcceeccccCCCCC---------CceEEEEEEeccCCC
Confidence 789999999888744 389999998543 333433222110 1223444 8999
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeecc---CCceEEEEEecccCceEEEEE
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD---DSLALVYESWYKTRRTRTWVI 486 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~Sp---Dg~~l~~~~~~~~~~~~l~~~ 486 (953)
++.++.. +..+.+.+||+ ..++..........+..+.|+| +++.|+....++ .+.++
T Consensus 180 ~~~l~~~-------------~~d~~i~i~d~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg----~i~i~ 239 (357)
T 3i2n_A 180 ERVVCAG-------------YDNGDIKLFDL---RNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEG----KFHVF 239 (357)
T ss_dssp CCEEEEE-------------ETTSEEEEEET---TTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTT----EEEEE
T ss_pred CCEEEEE-------------ccCCeEEEEEC---ccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCC----eEEEE
Confidence 9877665 44568999996 5455545556667788899999 999988876543 34444
Q ss_pred cCCCCCCCcEEe---ecCCCccccCCCCCCCeEeccCCC-EEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCC
Q 002209 487 SPGSKDVAPRIL---FDRSSEDVYSDPGSPMMRRTSTGT-YVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTG 562 (953)
Q Consensus 487 d~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~SpDG~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~ 562 (953)
++.++....... .......+.. +.|+|+|+ +++....+ ..+++||+..+
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~~l~~~~~d---------------------g~i~iwd~~~~ 292 (357)
T 3i2n_A 240 DMRTQHPTKGFASVSEKAHKSTVWQ------VRHLPQNRELFLTAGGA---------------------GGLHLWKYEYP 292 (357)
T ss_dssp EEEEEETTTEEEEEEEECCSSCEEE------EEEETTEEEEEEEEETT---------------------SEEEEEEEECC
T ss_pred eCcCCCcccceeeeccCCCcCCEEE------EEECCCCCcEEEEEeCC---------------------CcEEEeecCCC
Confidence 443321111111 1122223333 78999998 45544421 24888888765
Q ss_pred ceEEEeccCcccc-----eeeeEeeccC---CccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002209 563 SKERIWESDKEKY-----YETTVALMSD---QTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (953)
Q Consensus 563 ~~~~l~~~~~~~~-----~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g 619 (953)
........++... +..+..+... -...+|+|+++.++++.+.. ..++++++.+.
T Consensus 293 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d---~~i~iw~~~~~ 354 (357)
T 3i2n_A 293 IQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFD---QTVRVLIVTKL 354 (357)
T ss_dssp SCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETT---SEEEEEEECC-
T ss_pred cccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCC---CcEEEEECCCc
Confidence 5443222222100 0000000000 01257899999887655543 35778876554
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-12 Score=142.86 Aligned_cols=226 Identities=13% Similarity=0.095 Sum_probs=146.1
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc---eeecccCCCccccccccceEEecCCeEEEEEecCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK---ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~---~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 265 (953)
..+....|+|||+.|++.. ....|+++++++++ ...+..+.. .+..++|+|||+.|+...
T Consensus 9 ~~i~~~~~s~~~~~l~~~~---------~d~~v~i~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~~~~--- 71 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICP---------NNHEVHIYEKSGNKWVQVHELKEHNG-----QVTGVDWAPDSNRIVTCG--- 71 (372)
T ss_dssp SCCCEEEECTTSSEEEEEC---------SSSEEEEEEEETTEEEEEEEEECCSS-----CEEEEEEETTTTEEEEEE---
T ss_pred CCeEEEEECCCCCEEEEEe---------CCCEEEEEeCCCCcEEeeeeecCCCC-----cccEEEEeCCCCEEEEEc---
Confidence 3688999999999998853 25678888888875 333332222 277899999999998761
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee---EeCCC-CcccccccC
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK---EIGPP-AVYTSLDPS 340 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~---~l~~~-~~~~~~~~S 340 (953)
..+.|.++++ +++.. .+... ..+..++|+
T Consensus 72 ----------------------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 105 (372)
T 1k8k_C 72 ----------------------------------------------TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 105 (372)
T ss_dssp ----------------------------------------------TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC
T ss_pred ----------------------------------------------CCCeEEEEECCCCeeeeeEEeecCCCceeEEEEC
Confidence 1245667777 66422 22333 678899999
Q ss_pred CCCcEEEEEEecCCccccccCCCCCcceEEEeccCce----EEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002209 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (953)
Q Consensus 341 pDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~----~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~ 416 (953)
|||+.|+....+ +.|.+||++.+. .+.+.. .....+..++|+||++.++..
T Consensus 106 ~~~~~l~~~~~d-------------~~v~i~d~~~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~l~~~ 160 (372)
T 1k8k_C 106 PNEKKFAVGSGS-------------RVISICYFEQENDWWVCKHIKK------------PIRSTVLSLDWHPNSVLLAAG 160 (372)
T ss_dssp TTSSEEEEEETT-------------SSEEEEEEETTTTEEEEEEECT------------TCCSCEEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEeCC-------------CEEEEEEecCCCcceeeeeeec------------ccCCCeeEEEEcCCCCEEEEE
Confidence 999999988744 389999998544 122211 111345679999999876655
Q ss_pred EEeccCCCcccccccCCeEEEEecCC----------------CCCCCceEEeecccccCCeeeccCCceEEEEEecccCc
Q 002209 417 AETQDGGDAKVEVTPRDIIYTQQAEP----------------VQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (953)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~d~~~----------------~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 480 (953)
+..+.+.+||+.. ..+.....+..+...+..+.|+|||+.|+....++
T Consensus 161 -------------~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--- 224 (372)
T 1k8k_C 161 -------------SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS--- 224 (372)
T ss_dssp -------------ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT---
T ss_pred -------------cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC---
Confidence 3455788888410 01122223344556677899999999888876443
Q ss_pred eEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEE
Q 002209 481 TRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (953)
Q Consensus 481 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~ 527 (953)
.+.++|..++ +...........+.. +.|+|||++++..
T Consensus 225 -~i~i~d~~~~--~~~~~~~~~~~~v~~------~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 225 -TVCLADADKK--MAVATLASETLPLLA------VTFITESSLVAAG 262 (372)
T ss_dssp -EEEEEEGGGT--TEEEEEECSSCCEEE------EEEEETTEEEEEE
T ss_pred -EEEEEECCCC--ceeEEEccCCCCeEE------EEEecCCCEEEEE
Confidence 4666666654 333333333222332 7899999877655
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-13 Score=141.47 Aligned_cols=197 Identities=9% Similarity=-0.037 Sum_probs=124.7
Q ss_pred cEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh--h-hhHHHHHHHHHHHH
Q 002209 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN--D-RFVEQLVACAEAAV 747 (953)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~--~-~~~~~~~~D~~~~~ 747 (953)
|.||++||..... ..| . .....|+++||.|++ .|.+|+|.+... . ..+....+|+.+.+
T Consensus 4 ~~vvllHG~~~~~-----------~~w---~-~~~~~L~~~g~~via---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l 65 (257)
T 3c6x_A 4 AHFVLIHTICHGA-----------WIW---H-KLKPLLEALGHKVTA---LDLAASGVDPRQIEEIGSFDEYSEPLLTFL 65 (257)
T ss_dssp CEEEEECCTTCCG-----------GGG---T-THHHHHHHTTCEEEE---ECCTTSTTCSCCGGGCCSHHHHTHHHHHHH
T ss_pred CcEEEEcCCccCc-----------CCH---H-HHHHHHHhCCCEEEE---eCCCCCCCCCCCcccccCHHHHHHHHHHHH
Confidence 5789999953211 112 1 345567789999999 555688887432 1 23566667766665
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC-CCCCc-----------Ccccc---------
Q 002209 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR-TLTPF-----------GFQNE--------- 806 (953)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~-~~~~~-----------~~~~~--------- 806 (953)
+.+ + ..+++.|+||||||.+++.++.++|++++++|++++.... ..... .+...
T Consensus 66 ~~l---~--~~~~~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (257)
T 3c6x_A 66 EAL---P--PGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDG 140 (257)
T ss_dssp HTS---C--TTCCEEEEEEETHHHHHHHHHHHHGGGEEEEEEEEECCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETT
T ss_pred Hhc---c--ccCCeEEEEECcchHHHHHHHHhCchhhheEEEEecccCCCCCcchhHHHHHhhcCcchhhhhhhhccCCC
Confidence 543 1 1258999999999999999999999999999988764210 00000 00000
Q ss_pred -------cch-h-----h-----hhHHHHH-hcCccc----------cc--CC-CCCcEEEEEeCCCCCCCCchHHHHHH
Q 002209 807 -------DRT-L-----W-----EATSTYV-EMSPFM----------SA--NK-LKKPILLVHGEEDNNSGTLTMQSDRF 854 (953)
Q Consensus 807 -------~~~-~-----~-----~~~~~~~-~~sp~~----------~~--~~-i~~P~Li~~G~~D~~v~~~~~~~~~~ 854 (953)
... . + +...... ...+.. .. .. .++|+|+++|++|..+| +..++++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p--~~~~~~~ 218 (257)
T 3c6x_A 141 KEITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFL--PEFQLWQ 218 (257)
T ss_dssp EEEEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHSCCCCTTTGGGSCEEEEECTTCSSSC--HHHHHHH
T ss_pred CccccccccHHHHHHHHhcCCCHHHHHHHHHhcCCCccchhhhccccccChhhcCcccEEEEEeCCCcccC--HHHHHHH
Confidence 000 0 0 0000000 001100 00 11 26799999999999998 8888877
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 855 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
.+.+.. .+++++|++||.. ..+..+.+.+.+.+|++++
T Consensus 219 ~~~~~~----~~~~~i~~~gH~~-~~e~P~~~~~~l~~f~~~~ 256 (257)
T 3c6x_A 219 IENYKP----DKVYKVEGGDHKL-QLTKTKEIAEILQEVADTY 256 (257)
T ss_dssp HHHSCC----SEEEECCSCCSCH-HHHSHHHHHHHHHHHHHHC
T ss_pred HHHCCC----CeEEEeCCCCCCc-ccCCHHHHHHHHHHHHHhc
Confidence 776643 4889999999986 3667788889999998764
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.6e-13 Score=145.54 Aligned_cols=198 Identities=12% Similarity=0.084 Sum_probs=120.7
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCC-CCCCCCChhhhhhhHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT-PIIGEGDEEANDRFVEQLVACAEAAVE 748 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~-~~~G~G~~~~~~~~~~~~~~D~~~~~~ 748 (953)
.|+||++||.... ...+..+ ......| ++||.|+.+|.+ +.+|+|.+.. .....|+.++++
T Consensus 38 ~~~vvllHG~~~~-----------~~~~~~~-~~l~~~L-~~g~~Vi~~Dl~~D~~G~G~S~~-----~~~~~d~~~~~~ 99 (335)
T 2q0x_A 38 RRCVLWVGGQTES-----------LLSFDYF-TNLAEEL-QGDWAFVQVEVPSGKIGSGPQDH-----AHDAEDVDDLIG 99 (335)
T ss_dssp SSEEEEECCTTCC-----------TTCSTTH-HHHHHHH-TTTCEEEEECCGGGBTTSCSCCH-----HHHHHHHHHHHH
T ss_pred CcEEEEECCCCcc-----------ccchhHH-HHHHHHH-HCCcEEEEEeccCCCCCCCCccc-----cCcHHHHHHHHH
Confidence 5789999994210 0111110 1233344 789999996542 5578888732 345678888888
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHH--hCCCcccEEEEcccCCCCCCCCcCc---c-------------------
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLA--HAPHLFCCGIARSGAYNRTLTPFGF---Q------------------- 804 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~--~~p~~~~a~v~~~~~~d~~~~~~~~---~------------------- 804 (953)
++.+. .+.+++.|+||||||.+++.++. .+|++++++|+.++..+.....+.. .
T Consensus 100 ~l~~~--l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (335)
T 2q0x_A 100 ILLRD--HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCDPENPLFTPEGCAARKEHVEKLMAEGRGEDSL 177 (335)
T ss_dssp HHHHH--SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCCTTSTTTSHHHHHHHHHHHHHHHHHTCTTCGG
T ss_pred HHHHH--cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCcccchhcccCHHHHHHHHHHHHHHhhccCccccc
Confidence 88764 34579999999999999999999 4789999999998865422000000 0
Q ss_pred ------cc--cchhhh------hHHH-HH------hcCcccccCCCCCcEEEEEeCCCCCCCCchHHH-HHHHHHHHhCC
Q 002209 805 ------NE--DRTLWE------ATST-YV------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS-DRFFNALKGHG 862 (953)
Q Consensus 805 ------~~--~~~~~~------~~~~-~~------~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~-~~~~~~l~~~g 862 (953)
.. ....+. .... +. ..+....+.+|++|+||+||++|..+| +... ..+.+.+...-
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLvi~G~~D~~vp--~~~~~~~~~~~l~~~~ 255 (335)
T 2q0x_A 178 AMLKHYDIPITPARLAGGGFPTLQEAVWNPCIRKEFDVLRRSVGVIKVPLLLMLAHNVQYKP--SDEEVGTVLEGVRDHT 255 (335)
T ss_dssp GGTTTCSSCCCHHHHHTCSCSSHHHHTHHHHHTTCHHHHHHTGGGCCSCEEEEEECCTTCCC--CHHHHHHHHHHHHHHS
T ss_pred cchhhccCccCHHHHhhccCCCchhhhhhhhhhhhhhHHHHHHhcCCCCeEEEEecCCCCCC--hhhhHHHHHHHHHHhc
Confidence 00 000000 0000 00 001123467789999999999999998 7542 23333333221
Q ss_pred CcEE--------E-----EEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 863 ALCR--------L-----VILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 863 ~~~~--------~-----~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
...+ + +++|++|| +..+.+.+||.+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~i~~agH---------e~~~~i~~FL~~~~ 295 (335)
T 2q0x_A 256 GCNRVTVSYFNDTCDELRRVLKAAES---------EHVAAILQFLADED 295 (335)
T ss_dssp SSSCEEEEECCCEECTTSCEEECCHH---------HHHHHHHHHHHHHH
T ss_pred CccccccccccchhhhhhcccCCCCC---------HHHHHHHHHHHhhh
Confidence 1122 5 78999999 23788899998764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-12 Score=135.87 Aligned_cols=244 Identities=12% Similarity=0.118 Sum_probs=149.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++||..+.+ +.|.||++.. +.......+.++ ..
T Consensus 11 ~V~~~~~s~~g~~las~s~D---------------------------------~~v~iw~~~~-~~~~~~~~l~gH--~~ 54 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSD---------------------------------KTIKIFEVEG-ETHKLIDTLTGH--EG 54 (297)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SCEEEEEBCS-SCBCCCEEECCC--SS
T ss_pred ceEEEEECCCCCEEEEEeCC---------------------------------CEEEEEecCC-CCcEEEEEEccc--cC
Confidence 46678999999999998875 3679999843 111122334333 24
Q ss_pred cccceEeccC--CCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecC--CeEEEEEecCC
Q 002209 190 KLNFVTWSQD--GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN--STLLVCTIPLL 265 (953)
Q Consensus 190 ~~~~~~wSPD--G~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD--g~~l~~~~~~~ 265 (953)
.+....|+|+ |+.|+..+ ....|.++|+++++...+..... ....+..++|+|+ |+.|+...
T Consensus 55 ~V~~v~~s~~~~g~~l~s~s---------~D~~v~iWd~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~g~~l~s~s--- 120 (297)
T 2pm7_B 55 PVWRVDWAHPKFGTILASCS---------YDGKVMIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPMLLVAS--- 120 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEE---------TTTEEEEEEBSSSCBCCCEEECC--CSSCEEEEEECCGGGCSEEEEEE---
T ss_pred CeEEEEecCCCcCCEEEEEc---------CCCEEEEEEcCCCceEEEEEeec--CCCceeEEEeCcCCCCcEEEEEE---
Confidence 6888999874 88887755 25678888888775332221111 1112778999998 77877651
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc---eeEeCCC-CcccccccC
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLDPS 340 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~---~~~l~~~-~~~~~~~~S 340 (953)
..+.|.++++ ++. ...+... ..+..++|+
T Consensus 121 ----------------------------------------------~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~ 154 (297)
T 2pm7_B 121 ----------------------------------------------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 154 (297)
T ss_dssp ----------------------------------------------TTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEEC
T ss_pred ----------------------------------------------CCCcEEEEEecCCCceeeeeeecccCccceEeec
Confidence 2245666676 442 2223333 667788999
Q ss_pred CC-------------CcEEEEEEecCCccccccCCCCCcceEEEeccCce--EEEeccCCCcccCCccccccccCcccee
Q 002209 341 PD-------------EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (953)
Q Consensus 341 pD-------------G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~--~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (953)
|+ ++.|+..+.+. .|.+||+..+. ...+.... +....+..++
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D~-------------~v~lwd~~~~~~~~~~~~~l~----------~H~~~V~~v~ 211 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGADN-------------LVKIWKYNSDAQTYVLESTLE----------GHSDWVRDVA 211 (297)
T ss_dssp CCC------------CCEEEEEETTS-------------CEEEEEEETTTTEEEEEEEEC----------CCSSCEEEEE
T ss_pred CCcccccccCCCCCCcceEEEEcCCC-------------cEEEEEEcCCCceEEEEEEec----------CCCCceEEEE
Confidence 97 56777766443 89999997532 11111111 1223457899
Q ss_pred eccCC---CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC---ce-EE--eecccccCCeeeccCCceEEEEEec
Q 002209 406 WRSDK---PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG---PE-IL--HKLDLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 406 wspDg---~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~---~~-~l--~~~~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
|+||+ +.++-. +....+.+|++ .... .. .+ ......+..++|+|||+.|+....+
T Consensus 212 ~sp~~~~~~~las~-------------s~D~~v~iWd~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D 275 (297)
T 2pm7_B 212 WSPTVLLRSYMASV-------------SQDRTCIIWTQ---DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (297)
T ss_dssp ECCCCSSSEEEEEE-------------ETTSCEEEEEE---SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred ECCCCCCceEEEEE-------------ECCCcEEEEEe---CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence 99996 333333 34557888886 2221 11 22 1234456678999999999887765
Q ss_pred ccCceEEEEEcCCC
Q 002209 477 KTRRTRTWVISPGS 490 (953)
Q Consensus 477 ~~~~~~l~~~d~~~ 490 (953)
+. .+||..+..+
T Consensus 276 ~~--v~lw~~~~~g 287 (297)
T 2pm7_B 276 NK--VTLWKENLEG 287 (297)
T ss_dssp SC--EEEEEECTTS
T ss_pred Cc--EEEEEECCCC
Confidence 43 4788776543
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-13 Score=142.24 Aligned_cols=170 Identities=11% Similarity=0.036 Sum_probs=105.6
Q ss_pred HHHHHcCcEEEEcCCCCCCCCCChhhhhhh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcc
Q 002209 706 LLWLARGFAILGGPTTPIIGEGDEEANDRF-VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (953)
Q Consensus 706 ~~la~~G~~V~~~~~~~~~G~G~~~~~~~~-~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 784 (953)
..| +.+|.|++ .|.+|+|.+.....+ ... .++.+.+. ++ +++.|+||||||.+++.+|.++|+++
T Consensus 34 ~~L-~~~~~vi~---~Dl~G~G~S~~~~~~~~~~-------~~~~l~~~--l~-~~~~lvGhS~Gg~va~~~a~~~p~~v 99 (258)
T 1m33_A 34 EEL-SSHFTLHL---VDLPGFGRSRGFGALSLAD-------MAEAVLQQ--AP-DKAIWLGWSLGGLVASQIALTHPERV 99 (258)
T ss_dssp HHH-HTTSEEEE---ECCTTSTTCCSCCCCCHHH-------HHHHHHTT--SC-SSEEEEEETHHHHHHHHHHHHCGGGE
T ss_pred HHh-hcCcEEEE---eeCCCCCCCCCCCCcCHHH-------HHHHHHHH--hC-CCeEEEEECHHHHHHHHHHHHhhHhh
Confidence 344 46899999 555688877543211 222 22333332 33 68999999999999999999999999
Q ss_pred cEEEEcccCCCCCC-CCcC-cccc--------c-----------------c--hhhhhHH--------------------
Q 002209 785 CCGIARSGAYNRTL-TPFG-FQNE--------D-----------------R--TLWEATS-------------------- 815 (953)
Q Consensus 785 ~a~v~~~~~~d~~~-~~~~-~~~~--------~-----------------~--~~~~~~~-------------------- 815 (953)
+++|++++...... ..+. .... . . ......+
T Consensus 100 ~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (258)
T 1m33_A 100 RALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTETARQDARALKKTVLALPMPEVDVLNGG 179 (258)
T ss_dssp EEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTHHHHHHHHHHHHHTSCCCCHHHHHHH
T ss_pred ceEEEECCCCCccccccccCCCHHHHHHHHHHHhccHHHHHHHHHHHHhcCCccchhhHHHHHHHHHhccCCcHHHHHHH
Confidence 99999876421100 0000 0000 0 0 0000000
Q ss_pred --HHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 002209 816 --TYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (953)
Q Consensus 816 --~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~f 893 (953)
.+...+....+.++++|+|+++|++|..+| ...++.+.+.+. ..++++++++||... .+..+.+.+.+.+|
T Consensus 180 ~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~f 252 (258)
T 1m33_A 180 LEILKTVDLRQPLQNVSMPFLRLYGYLDGLVP--RKVVPMLDKLWP----HSESYIFAKAAHAPF-ISHPAEFCHLLVAL 252 (258)
T ss_dssp HHHHHHCCCTTGGGGCCSCEEEEEETTCSSSC--GGGCC-CTTTCT----TCEEEEETTCCSCHH-HHSHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHhhCCCCEEEEeecCCCCCC--HHHHHHHHHhCc----cceEEEeCCCCCCcc-ccCHHHHHHHHHHH
Confidence 011112223456789999999999999988 776665544332 358899999999863 45567788888888
Q ss_pred HHH
Q 002209 894 LQK 896 (953)
Q Consensus 894 l~~ 896 (953)
+.+
T Consensus 253 l~~ 255 (258)
T 1m33_A 253 KQR 255 (258)
T ss_dssp HTT
T ss_pred HHh
Confidence 854
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.1e-14 Score=145.38 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC------CcccEEEEcccCCCCCCCCcCcccccchhhhh
Q 002209 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP------HLFCCGIARSGAYNRTLTPFGFQNEDRTLWEA 813 (953)
Q Consensus 740 ~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p------~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~ 813 (953)
..|+.+++++|.+....+..+++|+||||||.+|+.++.+.+ ..+++++.+++........ .+... ..+..
T Consensus 83 ~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~~-~~~~~--~~~~~ 159 (243)
T 1ycd_A 83 ELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPDP-EHPGE--LRITE 159 (243)
T ss_dssp GCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEECT-TSTTC--EEECG
T ss_pred hhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCccc-ccccc--cccch
Confidence 345566666665542233468999999999999999998742 2478888887764311000 00000 00000
Q ss_pred HHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCC---CcEEEEEeCCCCccCCCcccHHHHHHHH
Q 002209 814 TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG---ALCRLVILPFESHGYAARESIMHVLWET 890 (953)
Q Consensus 814 ~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~H~~~~~~~~~~~~~~i 890 (953)
.+ ......+.++++|+|++||++|..|| +.++.++++.++..+ .....++++++||.+... ..+.+.+
T Consensus 160 --~~--~~~~~~~~~~~~P~l~i~G~~D~~vp--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~gH~~~~~---~~~~~~i 230 (243)
T 1ycd_A 160 --KF--RDSFAVKPDMKTKMIFIYGASDQAVP--SVRSKYLYDIYLKAQNGNKEKVLAYEHPGGHMVPNK---KDIIRPI 230 (243)
T ss_dssp --GG--TTTTCCCTTCCCEEEEEEETTCSSSC--HHHHHHHHHHHHHHTTTCTTTEEEEEESSSSSCCCC---HHHHHHH
T ss_pred --hH--HHhccCcccCCCCEEEEEeCCCCccC--HHHHHHHHHHhhhhccccccccEEEecCCCCcCCch---HHHHHHH
Confidence 01 01223456688999999999999999 999999999997641 111334566679987532 3578899
Q ss_pred HHHHHHhccC
Q 002209 891 DRWLQKYCVS 900 (953)
Q Consensus 891 ~~fl~~~l~~ 900 (953)
.+||+++++.
T Consensus 231 ~~fl~~~~~~ 240 (243)
T 1ycd_A 231 VEQITSSLQE 240 (243)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHhhhh
Confidence 9999998753
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-11 Score=136.84 Aligned_cols=250 Identities=9% Similarity=-0.007 Sum_probs=155.8
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc-------eeecccCCCccccccccceEEecC----C--
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-------ARPLFQSPDIYLNAIFDNFVWVNN----S-- 255 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~-------~~~lt~~~~~~~~~~~~~~~wspD----g-- 255 (953)
..+....|+| +.|+... ....|+++++++++ ...+..+.. .+..+.|+|+ |
T Consensus 17 ~~i~~~~~~~--~~l~s~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 17 ADIFSVSACN--SFTVSCS---------GDGYLKVWDNKLLDNENPKDKSYSHFVHKS-----GLHHVDVLQAIERDAFE 80 (397)
T ss_dssp SCEEEEEECS--SEEEEEE---------TTSEEEEEESBCCTTCCGGGGEEEEECCTT-----CEEEEEEEEEEETTTEE
T ss_pred cCeEEEEecC--CeEEEEc---------CCCEEEEEECCCcccccCCCcceEEecCCC-----cEEEEEEecccccCCcc
Confidence 4688999998 6666644 25688888988876 444433322 2778999999 9
Q ss_pred -eEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc------eeE
Q 002209 256 -TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT------VKE 327 (953)
Q Consensus 256 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~------~~~ 327 (953)
+.|+... ..+.|.++++ +++ ...
T Consensus 81 ~~~l~s~~-------------------------------------------------~dg~i~iw~~~~~~~~~~~~~~~ 111 (397)
T 1sq9_A 81 LCLVATTS-------------------------------------------------FSGDLLFYRITREDETKKVIFEK 111 (397)
T ss_dssp EEEEEEEE-------------------------------------------------TTSCEEEEEEEECTTTCCEEEEE
T ss_pred ccEEEEEc-------------------------------------------------CCCCEEEEEccCCccccccccee
Confidence 8888661 1245666676 554 455
Q ss_pred eCCC------CcccccccC----CCCcE-EEEEEecCCccccccCCCCCcceEEEeccC------ce-EE-----EeccC
Q 002209 328 IGPP------AVYTSLDPS----PDEKY-ILISSIHRPYSFIVPCGRFPRQVGVWTTDG------IF-VR-----ELCDL 384 (953)
Q Consensus 328 l~~~------~~~~~~~~S----pDG~~-l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g------~~-~~-----~l~~~ 384 (953)
+... ..+..++|+ |||+. |+..+.+ +.|.+||+.. +. .+ .+...
T Consensus 112 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 178 (397)
T 1sq9_A 112 LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-------------GTTYIWKFHPFADESNSLTLNWSPTLELQGT 178 (397)
T ss_dssp ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-------------SCEEEEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred ecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-------------CcEEEEeCCccccccccceeeccCcceeeee
Confidence 5443 567889999 99999 7777633 3899999976 32 11 11100
Q ss_pred CCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEEee---c---ccc
Q 002209 385 PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHK---L---DLR 457 (953)
Q Consensus 385 ~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~---~---~~~ 457 (953)
.. ........+..++|+||| .++.. +..+.+.+||+ ..++. ..+.. + ...
T Consensus 179 ---~~---~~~~~~~~i~~~~~~~~~-~l~~~-------------~~dg~i~i~d~---~~~~~~~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 179 ---VE---SPMTPSQFATSVDISERG-LIATG-------------FNNGTVQISEL---STLRPLYNFESQHSMINNSNS 235 (397)
T ss_dssp ---EC---CSSSSCCCCCEEEECTTS-EEEEE-------------CTTSEEEEEET---TTTEEEEEEECCC---CCCCC
T ss_pred ---ec---cccCCCCCceEEEECCCc-eEEEE-------------eCCCcEEEEEC---CCCceeEEEeccccccccCCc
Confidence 00 000112345789999999 55444 44568999996 33333 33343 4 666
Q ss_pred cCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecC-------------CCccccCCCCCCCeEeccCCCEE
Q 002209 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR-------------SSEDVYSDPGSPMMRRTSTGTYV 524 (953)
Q Consensus 458 ~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~-------------~~~~~~~~~~~p~~~~SpDG~~l 524 (953)
+..+.|+|||+.|+....++ ....|.++|+.++ +....... ....+.. +.|+|||++|
T Consensus 236 i~~i~~~~~~~~l~~~~~d~-~~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~l 306 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSSWVMS------LSFNDSGETL 306 (397)
T ss_dssp EEEEEECSSTTEEEEEEEET-TEEEEEEEETTTC--CEEEEECBC--------CCBSBSSCEEE------EEECSSSSEE
T ss_pred cceEEECCCCCEEEEEecCC-CCceEEEEECCCC--cccceeccCcccccccccccccCCcEEE------EEECCCCCEE
Confidence 78899999999988876541 1126777787764 33333322 2222222 7899999998
Q ss_pred EEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEec
Q 002209 525 IAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~ 569 (953)
+....+ ..|++||+.+++......
T Consensus 307 ~~~~~d---------------------g~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 307 CSAGWD---------------------GKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEEETT---------------------SEEEEEETTTTEEEEEEE
T ss_pred EEEeCC---------------------CeEEEEEcCCCceeEEEe
Confidence 877632 249999999887766555
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-13 Score=154.58 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=54.3
Q ss_pred cccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC-CCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP-FESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 824 ~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
..+.++++|+|+++|++|..+| ++.++++.+.+. ..++++++ ++||... .+..+.+.+.+.+||++++
T Consensus 375 ~~l~~i~~PvLvi~G~~D~~~p--~~~~~~l~~~~p----~~~~~~i~~~~GH~~~-~e~p~~~~~~i~~fL~~~l 443 (444)
T 2vat_A 375 EALAMITQPALIICARSDGLYS--FDEHVEMGRSIP----NSRLCVVDTNEGHDFF-VMEADKVNDAVRGFLDQSL 443 (444)
T ss_dssp HHHTTCCSCEEEEECTTCSSSC--HHHHHHHHHHST----TEEEEECCCSCGGGHH-HHTHHHHHHHHHHHHTC--
T ss_pred HHhhcCCCCEEEEEeCCCCCCC--HHHHHHHHHHCC----CcEEEEeCCCCCcchH-HhCHHHHHHHHHHHHHHhc
Confidence 3467889999999999999998 888888877764 36899999 8999864 4556778888888887654
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-13 Score=144.07 Aligned_cols=211 Identities=9% Similarity=-0.045 Sum_probs=133.1
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCC
Q 002209 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (953)
Q Consensus 645 ~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~ 724 (953)
...+|.++....+-+ .|+||++||...... .|.. ....|+ .+|.|+++ +.+
T Consensus 14 ~~~~g~~l~~~~~g~----------~~~vv~lHG~~~~~~-----------~~~~----~~~~L~-~~~~vi~~---D~~ 64 (302)
T 1mj5_A 14 IEIKGRRMAYIDEGT----------GDPILFQHGNPTSSY-----------LWRN----IMPHCA-GLGRLIAC---DLI 64 (302)
T ss_dssp EEETTEEEEEEEESC----------SSEEEEECCTTCCGG-----------GGTT----TGGGGT-TSSEEEEE---CCT
T ss_pred EEECCEEEEEEEcCC----------CCEEEEECCCCCchh-----------hhHH----HHHHhc-cCCeEEEE---cCC
Confidence 345788887665421 478999999642211 1211 122344 44899994 446
Q ss_pred CCCChhhhh------hhHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC
Q 002209 725 GEGDEEAND------RFVEQLVACAEAAVEEVVRRGVAHP-SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (953)
Q Consensus 725 G~G~~~~~~------~~~~~~~~D~~~~~~~l~~~~~~d~-~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~ 797 (953)
|+|.+.... ......++|+.++++.+ +. +++.|+||||||.+++.++.++|++++++|++++.....
T Consensus 65 G~G~S~~~~~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~ 138 (302)
T 1mj5_A 65 GMGDSDKLDPSGPERYAYAEHRDYLDALWEAL------DLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPI 138 (302)
T ss_dssp TSTTSCCCSSCSTTSSCHHHHHHHHHHHHHHT------TCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCB
T ss_pred CCCCCCCCCCCCcccccHHHHHHHHHHHHHHh------CCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCCch
Confidence 777764432 23556667776666554 23 689999999999999999999999999999998865311
Q ss_pred CCC-cC--cc-------cc----------------------cchhh--------------hhHHHHHh------------
Q 002209 798 LTP-FG--FQ-------NE----------------------DRTLW--------------EATSTYVE------------ 819 (953)
Q Consensus 798 ~~~-~~--~~-------~~----------------------~~~~~--------------~~~~~~~~------------ 819 (953)
... .. .. .. ..... .....+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (302)
T 1mj5_A 139 EWADFPEQDRDLFQAFRSQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPA 218 (302)
T ss_dssp CGGGSCGGGHHHHHHHHSTTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSH
T ss_pred hhhhhhHHHHHHHHHHhccchhhhhcChHHHHHHHHHhcCcccCCHHHHHHHHHHhhcccccccchHHHHHhccccccch
Confidence 000 00 00 00 00000 00000000
Q ss_pred ------cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 002209 820 ------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (953)
Q Consensus 820 ------~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~f 893 (953)
......+.++++|+|+++|++|..+| +..+.++.+.+ .. +++++ ++||... .+..+.+.+.+.+|
T Consensus 219 ~~~~~~~~~~~~l~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~----~~-~~~~~-~~gH~~~-~e~p~~~~~~i~~f 289 (302)
T 1mj5_A 219 DVVAIARDYAGWLSESPIPKLFINAEPGALTT--GRMRDFCRTWP----NQ-TEITV-AGAHFIQ-EDSPDEIGAAIAAF 289 (302)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEEEEEECSSSS--HHHHHHHTTCS----SE-EEEEE-EESSCGG-GTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhccCCCeEEEEeCCCCCCC--hHHHHHHHHhc----CC-ceEEe-cCcCccc-ccCHHHHHHHHHHH
Confidence 01123456789999999999999998 77766665443 23 78888 9999864 56678899999999
Q ss_pred HHHhcc
Q 002209 894 LQKYCV 899 (953)
Q Consensus 894 l~~~l~ 899 (953)
+.+...
T Consensus 290 l~~~~~ 295 (302)
T 1mj5_A 290 VRRLRP 295 (302)
T ss_dssp HHHHSC
T ss_pred HHhhcc
Confidence 988654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-13 Score=150.27 Aligned_cols=229 Identities=14% Similarity=0.085 Sum_probs=134.6
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc--eeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
.+....|||||+.|+... ....|.++++.++. .......... .+..++|+|||+.|+...
T Consensus 13 ~v~~~~~s~~g~~l~~~~---------~d~~i~iw~~~~~~~~~~~~~~~h~~----~v~~~~~s~~~~~l~s~s----- 74 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTT---------ATNQVELYEQDGNGWKHARTFSDHDK----IVTCVDWAPKSNRIVTCS----- 74 (377)
T ss_dssp CCSCCEECSSSSEEECCC---------SSSCBCEEEEETTEEEECCCBCCCSS----CEEEEEECTTTCCEEEEE-----
T ss_pred cEEEEEECCCCCEEEEec---------CCCEEEEEEccCCceEEEEEEecCCc----eEEEEEEeCCCCEEEEEe-----
Confidence 588899999999988743 24456666666663 3222222222 277899999999888761
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc----eeEeCCC-CcccccccCC
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----VKEIGPP-AVYTSLDPSP 341 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~----~~~l~~~-~~~~~~~~Sp 341 (953)
..+.|.++++ +++ ...+... ..+..++|+|
T Consensus 75 --------------------------------------------~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 110 (377)
T 3dwl_C 75 --------------------------------------------QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP 110 (377)
T ss_dssp --------------------------------------------TTSSEEEC------CCCCEEECCCCSSCEEEEECCT
T ss_pred --------------------------------------------CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC
Confidence 1234666676 554 3333334 7788999999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCce----EEEeccCCCcccCCccccccccCccceeeccCCCCceEEE
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~----~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~ 417 (953)
||+.|+..+.+. .|.+||++.+. .+.+... ....+..++|+|||+.++..
T Consensus 111 ~~~~l~~~~~d~-------------~i~iwd~~~~~~~~~~~~~~~~------------h~~~v~~~~~~~~~~~l~~~- 164 (377)
T 3dwl_C 111 NEDKFAVGSGAR-------------VISVCYFEQENDWWVSKHLKRP------------LRSTILSLDWHPNNVLLAAG- 164 (377)
T ss_dssp TSSCCEEEESSS-------------CEEECCC-----CCCCEEECSS------------CCSCEEEEEECTTSSEEEEE-
T ss_pred CCCEEEEEecCC-------------eEEEEEECCcccceeeeEeecc------------cCCCeEEEEEcCCCCEEEEE-
Confidence 999999887443 89999998654 3333320 11345689999999877665
Q ss_pred EeccCCCcccccccCCeEEEEecCCCC--C--------C--C-ceEE--eecccccCCeeeccCCceEEEEEecccCceE
Q 002209 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQ--G--------E--G-PEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTR 482 (953)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~d~~~~~--g--------~--~-~~~l--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 482 (953)
+..+.+.+|++.... . . . ...+ ..+...+..++|+|||+.|+..+.++ .
T Consensus 165 ------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~ 228 (377)
T 3dwl_C 165 ------------CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDS----S 228 (377)
T ss_dssp ------------ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTT----E
T ss_pred ------------eCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCC----c
Confidence 345578888851000 0 0 0 1111 13445567799999999998886544 3
Q ss_pred EEEEcCCCCCCCc--EEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 483 TWVISPGSKDVAP--RILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 483 l~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
|.++++.++...+ ..........+.. +.|+|||++|+...
T Consensus 229 i~iwd~~~~~~~~~~~~~~~~~~~~v~~------~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 229 VTIAYPSAPEQPPRALITVKLSQLPLRS------LLWANESAIVAAGY 270 (377)
T ss_dssp EC-CEECSTTSCEEECCCEECSSSCEEE------EEEEETTEEEEEES
T ss_pred EEEEECCCCCCcceeeEeecCCCCceEE------EEEcCCCCEEEEEc
Confidence 4444544432111 1112222222222 78999999887654
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.9e-13 Score=142.80 Aligned_cols=196 Identities=14% Similarity=0.025 Sum_probs=122.1
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHc--CcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR--GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAV 747 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~ 747 (953)
.|.||++||..... ..| ......|+++ ||.|+. ++.+|+|.+.... ...++|+.+.+
T Consensus 36 ~~~vvllHG~~~~~-----------~~~----~~~~~~L~~~~~g~~vi~---~D~~G~G~s~~~~---~~~~~~~~~~l 94 (302)
T 1pja_A 36 YKPVIVVHGLFDSS-----------YSF----RHLLEYINETHPGTVVTV---LDLFDGRESLRPL---WEQVQGFREAV 94 (302)
T ss_dssp CCCEEEECCTTCCG-----------GGG----HHHHHHHHHHSTTCCEEE---CCSSCSGGGGSCH---HHHHHHHHHHH
T ss_pred CCeEEEECCCCCCh-----------hHH----HHHHHHHHhcCCCcEEEE---eccCCCccchhhH---HHHHHHHHHHH
Confidence 57789999953110 111 2345667888 999999 5556777765432 23455555555
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-cccEEEEcccCCCCCCCCcCc-----cc----------------
Q 002209 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLTPFGF-----QN---------------- 805 (953)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~d~~~~~~~~-----~~---------------- 805 (953)
..+.+.. .+++.++||||||.+++.++.++|+ +++++|++++..........+ ..
T Consensus 95 ~~~~~~~---~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (302)
T 1pja_A 95 VPIMAKA---PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQ 171 (302)
T ss_dssp HHHHHHC---TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCTTCBCSCCHHHHHHCTTCCHHHHHHHHTSTTGG
T ss_pred HHHhhcC---CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCcccccccchhhhhHHHHHHHHHHhhccchHHHH
Confidence 5555443 3689999999999999999999998 799999998764321110000 00
Q ss_pred --ccchhhhh---HHHHHhcC-----------------cccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHH------
Q 002209 806 --EDRTLWEA---TSTYVEMS-----------------PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA------ 857 (953)
Q Consensus 806 --~~~~~~~~---~~~~~~~s-----------------p~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~------ 857 (953)
.....|.+ ...+.... ....+.+++ |+|+++|++|..+| +..+..+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~-P~lii~G~~D~~v~--~~~~~~~~~~~~~~~~ 248 (302)
T 1pja_A 172 EFSICNYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVG-HLVLIGGPDDGVIT--PWQSSFFGFYDANETV 248 (302)
T ss_dssp GSTGGGGBCCTTCHHHHHHHCSSHHHHTTSSCCTTHHHHHHHHTTCS-EEEEEECTTCSSSS--SGGGGGTCEECTTCCE
T ss_pred HhhhhhcccChhhhhhhhccchHHHHhhcCCccccchhHHHHHhccC-cEEEEEeCCCCccc--hhHhhHhhhcCCcccc
Confidence 00000000 01111000 023456788 99999999999998 7777665321
Q ss_pred ------------------HHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 858 ------------------LKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 858 ------------------l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
+... .+++++++|++||... .+..+.+.+.+.+||
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl 301 (302)
T 1pja_A 249 LEMEEQLVYLRDSFGLKTLLAR-GAIVRCPMAGISHTAW-HSNRTLYETCIEPWL 301 (302)
T ss_dssp ECGGGSHHHHTTTTSHHHHHHT-TCEEEEECSSCCTTTT-TSCHHHHHHHTGGGC
T ss_pred cchhhhhhhhhhhhchhhHhhc-CCeEEEEecCcccccc-ccCHHHHHHHHHHhc
Confidence 2222 2389999999999864 455666766666664
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-12 Score=142.30 Aligned_cols=251 Identities=14% Similarity=0.024 Sum_probs=149.9
Q ss_pred ceEEEEccCCCCCCc-eeeeecCCCCCcccceEecc-CCCeEEEEEeeccccCCCCcceEEEEECCCCc-------e-ee
Q 002209 164 GIGIHQLFPDGKLGQ-EIEIQGFPDGAKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-------A-RP 233 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~-~~~l~~~~~~~~~~~~~wSP-DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~-------~-~~ 233 (953)
.|.||++...+.... ...+.+ +...+....|+| |++.|+... ....|.++++.++. . ..
T Consensus 58 ~i~v~~~~~~~~~~~~~~~~~~--h~~~V~~~~~~p~~~~~l~s~s---------~dg~v~vw~~~~~~~~~~~~~~~~~ 126 (402)
T 2aq5_A 58 AFLVLPLGKTGRVDKNVPLVCG--HTAPVLDIAWCPHNDNVIASGS---------EDCTVMVWEIPDGGLVLPLREPVIT 126 (402)
T ss_dssp CEEEEETTCCEECCTTCCCBCC--CSSCEEEEEECTTCTTEEEEEE---------TTSEEEEEECCTTCCSSCBCSCSEE
T ss_pred EEEEEECccCCCCCCCCceEec--CCCCEEEEEeCCCCCCEEEEEe---------CCCeEEEEEccCCCCccccCCceEE
Confidence 679999854332111 112222 234789999999 888887754 24578888887763 2 22
Q ss_pred cccCCCccccccccceEEecCC-eEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhc
Q 002209 234 LFQSPDIYLNAIFDNFVWVNNS-TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYA 312 (953)
Q Consensus 234 lt~~~~~~~~~~~~~~~wspDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 312 (953)
+..+.. .+..++|+|+| +.|+... .
T Consensus 127 ~~~h~~-----~v~~~~~~p~~~~~l~s~~-------------------------------------------------~ 152 (402)
T 2aq5_A 127 LEGHTK-----RVGIVAWHPTAQNVLLSAG-------------------------------------------------C 152 (402)
T ss_dssp EECCSS-----CEEEEEECSSBTTEEEEEE-------------------------------------------------T
T ss_pred ecCCCC-----eEEEEEECcCCCCEEEEEc-------------------------------------------------C
Confidence 222222 27789999998 4666541 2
Q ss_pred cceEEEEEc-CCce-eEe--CCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-Ee-ccCC
Q 002209 313 TTQLVLVSL-DGTV-KEI--GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-EL-CDLP 385 (953)
Q Consensus 313 ~~~l~~~~~-~g~~-~~l--~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l-~~~~ 385 (953)
.+.|.++|+ +++. ..+ ... ..+..++|+|||+.|+..+.+. .|.+||+..+... .+ ..+.
T Consensus 153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------------~i~iwd~~~~~~~~~~~~~~~ 219 (402)
T 2aq5_A 153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK-------------RVRVIEPRKGTVVAEKDRPHE 219 (402)
T ss_dssp TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTS-------------EEEEEETTTTEEEEEEECSSC
T ss_pred CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCC-------------cEEEEeCCCCceeeeeccCCC
Confidence 245778888 6654 344 233 7788999999999999887443 8999999865543 33 2221
Q ss_pred CcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe--ecccccCCeee
Q 002209 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISW 463 (953)
Q Consensus 386 ~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~--~~~~~~~~~~~ 463 (953)
. ..+..+.|+|||+.++.... .+..+.|.+||+ .++..+..+. .....+..+.|
T Consensus 220 ~------------~~~~~~~~~~~~~~l~~g~~----------~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 220 G------------TRPVHAVFVSEGKILTTGFS----------RMSERQVALWDT--KHLEEPLSLQELDTSSGVLLPFF 275 (402)
T ss_dssp S------------SSCCEEEECSTTEEEEEEEC----------TTCCEEEEEEET--TBCSSCSEEEECCCCSSCEEEEE
T ss_pred C------------CcceEEEEcCCCcEEEEecc----------CCCCceEEEEcC--ccccCCceEEeccCCCceeEEEE
Confidence 1 12357899999975444311 023558899996 2223322222 33445677899
Q ss_pred ccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecC-CCccccCCCCCCCeEeccCCCEEE
Q 002209 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR-SSEDVYSDPGSPMMRRTSTGTYVI 525 (953)
Q Consensus 464 SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~SpDG~~l~ 525 (953)
+|||+.|+.+...++ ..++| ++.++......+... ....+.. +.|+|||..++
T Consensus 276 s~~~~~l~~~g~~dg-~i~i~--d~~~~~~~~~~l~~~~~~~~v~~------~~~sp~~~~~~ 329 (402)
T 2aq5_A 276 DPDTNIVYLCGKGDS-SIRYF--EITSEAPFLHYLSMFSSKESQRG------MGYMPKRGLEV 329 (402)
T ss_dssp ETTTTEEEEEETTCS-CEEEE--EECSSTTCEEEEEEECCSSCCSE------EEECCGGGSCG
T ss_pred cCCCCEEEEEEcCCC-eEEEE--EecCCCcceEeecccccCCcccc------eEEecccccce
Confidence 999999887764332 23455 444431112223221 1122222 88999998765
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-12 Score=127.60 Aligned_cols=169 Identities=12% Similarity=-0.048 Sum_probs=109.8
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCc---EEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF---AILGGPTTPIIGEGDEEANDRFVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~---~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~ 746 (953)
.|+||++||.... ...| ......|+++|| .|+.++ ..|+|.+.. ........++.+.
T Consensus 3 ~~~vv~~HG~~~~-----------~~~~----~~~~~~l~~~G~~~~~v~~~d---~~g~g~s~~--~~~~~~~~~~~~~ 62 (181)
T 1isp_A 3 HNPVVMVHGIGGA-----------SFNF----AGIKSYLVSQGWSRDKLYAVD---FWDKTGTNY--NNGPVLSRFVQKV 62 (181)
T ss_dssp CCCEEEECCTTCC-----------GGGG----HHHHHHHHHTTCCGGGEEECC---CSCTTCCHH--HHHHHHHHHHHHH
T ss_pred CCeEEEECCcCCC-----------HhHH----HHHHHHHHHcCCCCccEEEEe---cCCCCCchh--hhHHHHHHHHHHH
Confidence 4679999995311 0111 245567888998 588844 456665532 1223333343333
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCccc
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFM 824 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 824 (953)
++.+ +.+++.++||||||.+++.++.++ |++++++|++++......... +. ...
T Consensus 63 ~~~~------~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~-~~--------------~~~--- 118 (181)
T 1isp_A 63 LDET------GAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGKA-LP--------------GTD--- 118 (181)
T ss_dssp HHHH------CCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSBC-CC--------------CSC---
T ss_pred HHHc------CCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCccccccccc-CC--------------CCC---
Confidence 3322 346899999999999999999988 889999999998643211100 00 000
Q ss_pred ccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 825 ~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
...++|+|+++|++|..|| ++.++ -...+++++++++|.... +. ..+.+.+.+||.+.
T Consensus 119 --~~~~~p~l~i~G~~D~~v~--~~~~~---------~~~~~~~~~~~~gH~~~~-~~-~~~~~~i~~fl~~~ 176 (181)
T 1isp_A 119 --PNQKILYTSIYSSADMIVM--NYLSR---------LDGARNVQIHGVGHIGLL-YS-SQVNSLIKEGLNGG 176 (181)
T ss_dssp --TTCCCEEEEEEETTCSSSC--HHHHC---------CBTSEEEEESSCCTGGGG-GC-HHHHHHHHHHHTTT
T ss_pred --CccCCcEEEEecCCCcccc--ccccc---------CCCCcceeeccCchHhhc-cC-HHHHHHHHHHHhcc
Confidence 1235799999999999998 66431 223588899999998743 33 36778888887653
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.9e-12 Score=135.60 Aligned_cols=212 Identities=11% Similarity=0.109 Sum_probs=130.0
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCC--------CC
Q 002209 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT--------TP 722 (953)
Q Consensus 651 ~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~--------~~ 722 (953)
.+.+.||+|.+ ++|.|+||.+||+. . ...+||+++.+++ .+
T Consensus 124 sf~~~i~lP~g-----~~P~Pvii~~~~~~----------------~----------~~~~G~A~i~f~~~~va~d~~~g 172 (433)
T 4g4g_A 124 SFSASIRKPSG-----AGPFPAIIGIGGAS----------------I----------PIPSNVATITFNNDEFGAQMGSG 172 (433)
T ss_dssp EEEEEEECCSS-----SCCEEEEEEESCCC----------------S----------CCCTTSEEEEECHHHHSCCSSGG
T ss_pred EEEEEEECCCC-----CCCccEEEEECCCc----------------c----------ccCCCeEEEEeCCcccccccCCC
Confidence 46899999975 45799999998731 1 0456999998554 22
Q ss_pred CCCCCChhhh-----hhh--HHHHHHHHHHHHHHHHH----cCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcc
Q 002209 723 IIGEGDEEAN-----DRF--VEQLVACAEAAVEEVVR----RGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (953)
Q Consensus 723 ~~G~G~~~~~-----~~~--~~~~~~D~~~~~~~l~~----~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (953)
++|+|. +.. ..+ ......++..+++||.. ++.||++||+|+|+|+||..|+++++.+ ++|+++|+.+
T Consensus 173 srG~g~-f~~ly~~~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D-~Ri~~vi~~~ 250 (433)
T 4g4g_A 173 SRGQGK-FYDLFGRDHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALV-DRIALTIPQE 250 (433)
T ss_dssp GTTCSH-HHHHHCTTCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHC-TTCSEEEEES
T ss_pred cCCccc-cccccCCccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcC-CceEEEEEec
Confidence 344443 221 111 22346799999999999 8899999999999999999999999999 6899999987
Q ss_pred cCCCCCCC-C-------cCcccc------cchhhhhHHHHHhc------Ccccc---cCC-CCCcEEEEEeCCCCCCCCc
Q 002209 792 GAYNRTLT-P-------FGFQNE------DRTLWEATSTYVEM------SPFMS---ANK-LKKPILLVHGEEDNNSGTL 847 (953)
Q Consensus 792 ~~~d~~~~-~-------~~~~~~------~~~~~~~~~~~~~~------sp~~~---~~~-i~~P~Li~~G~~D~~v~~~ 847 (953)
+..+-... . ++.... ....|-.. .|..+ -|+++ +.- ...|+|++.| +|..++
T Consensus 251 sg~~G~~~~R~~~~~~~~Ge~v~~~~~~~ge~~Wf~~-~f~~y~~~~~~LPfD~heL~ALiAPRPlLv~~g-~D~w~~-- 326 (433)
T 4g4g_A 251 SGAGGAACWRISDQQKAAGANIQTAAQIITENPWFSR-NFDPHVNSITSVPQDHHLLAALIVPRGLAVFEN-NIDWLG-- 326 (433)
T ss_dssp CCTTTTSCHHHHHHHHHTTCCCCCHHHHTTTCCCSCT-TTGGGTTCGGGSSCCGGGHHHHHTTSEEEEEEC-CCTTTC--
T ss_pred CCCCchhhhhhchhhcccCcchhhhhcccCCccccch-hhHhhccccccCCcCHHHHHHhhCCceEEEecC-CCCcCC--
Confidence 64331110 0 000000 00011100 01111 01110 000 2579999999 887776
Q ss_pred hHHHHHHHHHHH------hCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccCCCC
Q 002209 848 TMQSDRFFNALK------GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNTA 903 (953)
Q Consensus 848 ~~~~~~~~~~l~------~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~~ 903 (953)
+......+.+++ .....+.+.+.++.+|.....+ ..+.+.+||+++|+....
T Consensus 327 p~g~~~a~~aa~~VY~~lGa~d~l~~~~~ggH~Hc~fp~~----~r~~~~~F~~k~Lkg~~~ 384 (433)
T 4g4g_A 327 PVSTTGCMAAGRLIYKAYGVPNNMGFSLVGGHNHCQFPSS----QNQDLNSYINYFLLGQGS 384 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGEEEEECCSSCTTCCCGG----GHHHHHHHHHHHTTCCSC
T ss_pred cHHHHHHHHHHHHHHHHcCCccceEEEeeCCCCcccCCHH----HHHHHHHHHHHHhCCCCC
Confidence 665443333332 2334577766555566533222 246778999999987644
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-12 Score=134.75 Aligned_cols=213 Identities=14% Similarity=0.136 Sum_probs=129.3
Q ss_pred cEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCC--------C
Q 002209 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT--------T 721 (953)
Q Consensus 650 ~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~--------~ 721 (953)
..+.+.||+|.+. ++|.|+||.+||+. + ...+||+|+.+++ .
T Consensus 90 ~~~~~~i~lP~~~----~~p~Pvii~i~~~~----------------~----------~~~~G~a~~~~~~~~v~~~~~~ 139 (375)
T 3pic_A 90 ISFTVTITYPSSG----TAPYPAIIGYGGGS----------------L----------PAPAGVAMINFNNDNIAAQVNT 139 (375)
T ss_dssp EEEEEEEECCSSS----CSSEEEEEEETTCS----------------S----------CCCTTCEEEEECHHHHSCCSSG
T ss_pred eEEEEEEECCCCC----CCCccEEEEECCCc----------------c----------ccCCCeEEEEecccccccccCC
Confidence 3688999999752 35799999999841 1 1357899988543 2
Q ss_pred CCCCCCChhhh-----hhh--HHHHHHHHHHHHHHHHHcC--CCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEccc
Q 002209 722 PIIGEGDEEAN-----DRF--VEQLVACAEAAVEEVVRRG--VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (953)
Q Consensus 722 ~~~G~G~~~~~-----~~~--~~~~~~D~~~~~~~l~~~~--~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (953)
+.+|+|. +.. ..+ +.....|+..+++||..++ .||++||+|+|||+||.+|+++++.+ ++|+++|+.++
T Consensus 140 gs~g~g~-f~~ly~~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D-~Ri~~~v~~~~ 217 (375)
T 3pic_A 140 GSRGQGK-FYDLYGSSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFE-KRIVLTLPQES 217 (375)
T ss_dssp GGTTCSH-HHHHHCTTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHC-TTEEEEEEESC
T ss_pred CCcccee-cccccCCccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcC-CceEEEEeccC
Confidence 3344443 110 011 2334579999999999998 89999999999999999999999999 58999999876
Q ss_pred CCCCCCC--------CcCcccc------cchhhhhHHHHHhc------Cccc---ccCC-CCCcEEEEEeCCCCCCCCch
Q 002209 793 AYNRTLT--------PFGFQNE------DRTLWEATSTYVEM------SPFM---SANK-LKKPILLVHGEEDNNSGTLT 848 (953)
Q Consensus 793 ~~d~~~~--------~~~~~~~------~~~~~~~~~~~~~~------sp~~---~~~~-i~~P~Li~~G~~D~~v~~~~ 848 (953)
..+-... .++.... ....|-.. .|..+ -|++ .+.- ...|+||+.| .|..++ +
T Consensus 218 g~~G~~~~R~~~~~~~~Ge~v~~~~~~~~e~~Wf~~-~~~~y~~~~~~lP~D~h~L~ALiAPRPllv~~g-~D~w~~--~ 293 (375)
T 3pic_A 218 GAGGSACWRISDYLKSQGANIQTASEIIGEDPWFST-TFNSYVNQVPVLPFDHHSLAALIAPRGLFVIDN-NIDWLG--P 293 (375)
T ss_dssp CTTTTSCHHHHHHHHHTTCCCCCHHHHTTTCSCSCG-GGGGTTTCGGGSSCCHHHHHHTSTTSEEEEECC-CCGGGC--H
T ss_pred CCCchhhhhhhhhhcccCccccccccccCccccccc-chhhhcccccccCcCHHHHHHHhCCceEEEecC-CCcccC--c
Confidence 4331100 0000000 00011100 01111 0111 1111 2579999999 888877 6
Q ss_pred HHHHHHHHHH----HhCCC--cEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccCCC
Q 002209 849 MQSDRFFNAL----KGHGA--LCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 849 ~~~~~~~~~l----~~~g~--~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (953)
......+.++ +..|+ .+.+.+..+.+|..... ...+.+.+||+++|+...
T Consensus 294 ~g~~~~~~~a~~VY~~lG~~d~~~~~~~ggH~Hc~fp~----~~~~~~~~F~~k~L~~~~ 349 (375)
T 3pic_A 294 QSCFGCMTAAHMAWQALGVSDHMGYSQIGAHAHCAFPS----NQQSQLTAFVQKFLLGQS 349 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGEEEECCSCCSTTCCCG----GGHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHcCCccceEEEeeCCCccccCCH----HHHHHHHHHHHHHhCCCC
Confidence 6554344333 23343 46665433445532222 224678999999998753
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-12 Score=142.46 Aligned_cols=212 Identities=16% Similarity=0.091 Sum_probs=133.6
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|..++....-+ ++.|.||++||.+.... .| . .....|+ .+|.|++ .|.+|+
T Consensus 14 ~~g~~l~y~~~G~--------g~~~pvvllHG~~~~~~-----------~w---~-~~~~~L~-~~~~via---~Dl~G~ 66 (316)
T 3afi_E 14 VLGSSMAYRETGA--------QDAPVVLFLHGNPTSSH-----------IW---R-NILPLVS-PVAHCIA---PDLIGF 66 (316)
T ss_dssp ETTEEEEEEEESC--------TTSCEEEEECCTTCCGG-----------GG---T-TTHHHHT-TTSEEEE---ECCTTS
T ss_pred eCCEEEEEEEeCC--------CCCCeEEEECCCCCchH-----------HH---H-HHHHHHh-hCCEEEE---ECCCCC
Confidence 3677777665421 12358999999642211 12 1 1233444 4599999 555788
Q ss_pred CChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC---CCCCC-
Q 002209 727 GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN---RTLTP- 800 (953)
Q Consensus 727 G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d---~~~~~- 800 (953)
|.|.... .......+|+.+.++.+ +.+++.|+||||||.+++.+|.++|++++++|++++... +....
T Consensus 67 G~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~ 140 (316)
T 3afi_E 67 GQSGKPDIAYRFFDHVRYLDAFIEQR------GVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFIRPMPTWQDFHH 140 (316)
T ss_dssp TTSCCCSSCCCHHHHHHHHHHHHHHT------TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEECCCBSSGGGTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHc------CCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeeccCCCcchhhhccc
Confidence 8875432 23566677777766654 236899999999999999999999999999999876321 00000
Q ss_pred -------------------cCccc--------------------ccchh-hhhHHHHHhc-----------------Cc-
Q 002209 801 -------------------FGFQN--------------------EDRTL-WEATSTYVEM-----------------SP- 822 (953)
Q Consensus 801 -------------------~~~~~--------------------~~~~~-~~~~~~~~~~-----------------sp- 822 (953)
+.... ..... .+..+.|... ..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (316)
T 3afi_E 141 TEVAEEQDHAEAARAVFRKFRTPGEGEAMILEANAFVERVLPGGIVRKLGDEEMAPYRTPFPTPESRRPVLAFPRELPIA 220 (316)
T ss_dssp CCCGGGHHHHHHHHHHHHHHTSTTHHHHHHTTSCHHHHTTTGGGCSSCCCHHHHHHHHTTCCSTGGGHHHHHTGGGSCBT
T ss_pred hhhccccccchhHHHHHHHhcCCchhhHHHhccchHHHHhcccccCCCCCHHHHHHHHhhcCCccchhHHHHHHHhcccc
Confidence 00000 00000 0000011100 00
Q ss_pred -------------ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHH
Q 002209 823 -------------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889 (953)
Q Consensus 823 -------------~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~ 889 (953)
...+.++++|+|+++|++|..+| +..+.++.+.+. ..++++++++||... .+..+.+.+.
T Consensus 221 ~~~~~~~~~~~~~~~~l~~i~~P~Lvi~G~~D~~~~--~~~~~~~~~~~p----~~~~~~i~~~GH~~~-~e~p~~~~~~ 293 (316)
T 3afi_E 221 GEPADVYEALQSAHAALAASSYPKLLFTGEPGALVS--PEFAERFAASLT----RCALIRLGAGLHYLQ-EDHADAIGRS 293 (316)
T ss_dssp TBSHHHHHHHHHHHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHHHSS----SEEEEEEEEECSCHH-HHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHhhhccCCCeEEEecCCCCccC--HHHHHHHHHhCC----CCeEEEcCCCCCCch-hhCHHHHHHH
Confidence 01123578999999999999988 877777766653 368999999999863 5667788899
Q ss_pred HHHHHHHhc
Q 002209 890 TDRWLQKYC 898 (953)
Q Consensus 890 i~~fl~~~l 898 (953)
+.+||.+..
T Consensus 294 i~~fl~~~~ 302 (316)
T 3afi_E 294 VAGWIAGIE 302 (316)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcC
Confidence 999998764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-12 Score=146.23 Aligned_cols=187 Identities=12% Similarity=0.149 Sum_probs=113.3
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
..+..++|||||++||..+.++ ++.+|+.++ ....+. +. .+.. ...+..++|||||+
T Consensus 86 ~~V~~vawSPdG~~LAs~s~dg-------------~V~iwd~~~-~l~~l~-~~----~~~~----~~sv~svafSPDG~ 142 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNNG-------------NVSVFKDNK-MLTNLD-SK----GNLS----SRTYHCFEWNPIES 142 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETTS-------------CEEEEETTE-EEEECC-CS----SCST----TTCEEEEEECSSSS
T ss_pred CcEEEEEECCCCCEEEEEeCCC-------------cEEEEeCCc-eeeecc-CC----Cccc----cccEEEEEEcCCCC
Confidence 5788999999999999988554 899999655 222222 11 1100 02356899999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc--------eEEe----ecccccCCeeeccCCceEEEEEecccC
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP--------EILH----KLDLRYGGISWCDDSLALVYESWYKTR 479 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~--------~~l~----~~~~~~~~~~~SpDg~~l~~~~~~~~~ 479 (953)
.|+.. +..+.|.+|++ .++.. ..+. .+...+..++||||| |+.++.++
T Consensus 143 ~LAsg-------------s~DGtVkIWd~---~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~-- 202 (588)
T 2j04_A 143 SIVVG-------------NEDGELQFFSI---RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNN-- 202 (588)
T ss_dssp CEEEE-------------ETTSEEEEEEC---CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTC--
T ss_pred EEEEE-------------cCCCEEEEEEC---CCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCC--
Confidence 88887 55678999996 44432 2231 223467789999999 65555443
Q ss_pred ceEEEEEcCCCCCCC--cEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEE
Q 002209 480 RTRTWVISPGSKDVA--PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLF 557 (953)
Q Consensus 480 ~~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 557 (953)
.+++++++++... ...+...+...+.. ++|+ |+.|+.... ..+++|
T Consensus 203 --tVrlWd~~~~~~~~~~~tL~~~h~~~V~s------vaFs--g~~LASa~~----------------------~tIkLW 250 (588)
T 2j04_A 203 --SVFSMTVSASSHQPVSRMIQNASRRKITD------LKIV--DYKVVLTCP----------------------GYVHKI 250 (588)
T ss_dssp --CEEEECCCSSSSCCCEEEEECCCSSCCCC------EEEE--TTEEEEECS----------------------SEEEEE
T ss_pred --eEEEEECCCCccccceeeecccccCcEEE------EEEE--CCEEEEEeC----------------------CeEEEE
Confidence 3555566654211 12232233233333 7898 577776541 249999
Q ss_pred ECCCCceEEEeccCcccceeeeEeeccCCccccc--cccCCEEEEEEec
Q 002209 558 DINTGSKERIWESDKEKYYETTVALMSDQTEGDL--YLNQLKILTSKES 604 (953)
Q Consensus 558 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--s~dg~~l~~~~~~ 604 (953)
|+.+++...+..+... .+ ...+| ++|+..++...++
T Consensus 251 d~~~~~~~~~~~gh~~----~V-------~~va~~~s~d~~~La~a~ed 288 (588)
T 2j04_A 251 DLKNYSISSLKTGSLE----NF-------HIIPLNHEKESTILLMSNKT 288 (588)
T ss_dssp ETTTTEEEEEECSCCS----CC-------CEEEETTCSSCEEEEECSSC
T ss_pred ECCCCeEEEEEcCCCc----eE-------EEEEeeeCCCCCEEEEEcCC
Confidence 9998887544422211 01 12356 7888766654433
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-11 Score=131.78 Aligned_cols=289 Identities=9% Similarity=-0.044 Sum_probs=157.5
Q ss_pred ceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002209 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (953)
Q Consensus 193 ~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 272 (953)
.++++++++.++... ....|+++|+++++..+....+... ....++|+|||+.++++..
T Consensus 4 g~~~~~~~~~~v~~~---------~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~~~v~~~--------- 62 (349)
T 1jmx_B 4 GPALKAGHEYMIVTN---------YPNNLHVVDVASDTVYKSCVMPDKF---GPGTAMMAPDNRTAYVLNN--------- 62 (349)
T ss_dssp CCCCCTTCEEEEEEE---------TTTEEEEEETTTTEEEEEEECSSCC---SSCEEEECTTSSEEEEEET---------
T ss_pred cccccCCCEEEEEeC---------CCCeEEEEECCCCcEEEEEecCCCC---CCceeEECCCCCEEEEEeC---------
Confidence 457787776555433 3678999999998766544333200 1457899999998876610
Q ss_pred CCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCCC-------cccccccCCCC
Q 002209 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPPA-------VYTSLDPSPDE 343 (953)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~~-------~~~~~~~SpDG 343 (953)
....|+++|+ +++... +.... .+..++|||||
T Consensus 63 ---------------------------------------~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg 103 (349)
T 1jmx_B 63 ---------------------------------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG 103 (349)
T ss_dssp ---------------------------------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS
T ss_pred ---------------------------------------CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCC
Confidence 2356888998 775443 32221 25788999999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEE-eccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~-l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
++|++...+...... ........|++||+++++... +..... ...+..++|+|||+ +++.
T Consensus 104 ~~l~~~~~~~~~~~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~~s~dg~-l~~~------ 164 (349)
T 1jmx_B 104 KEVYATVNPTQRLND-HYVVKPPRLEVFSTADGLEAKPVRTFPM-----------PRQVYLMRAADDGS-LYVA------ 164 (349)
T ss_dssp SEEEEEEEEEEECSS-CEEECCCEEEEEEGGGGGGBCCSEEEEC-----------CSSCCCEEECTTSC-EEEE------
T ss_pred CEEEEEccccccccc-ccccCCCeEEEEECCCccccceeeeccC-----------CCcccceeECCCCc-EEEc------
Confidence 999988744100000 000012489999998543221 111110 01345678999998 4442
Q ss_pred CCcccccccCCeEEEEecCCCCCCCceE-Eeeccc------------------------ccCCeeeccCCceEEEEEecc
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEI-LHKLDL------------------------RYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~~~-l~~~~~------------------------~~~~~~~SpDg~~l~~~~~~~ 477 (953)
+ ..++++|+ .+++... +..... ....+.+++|+........
T Consensus 165 -------~--~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-- 230 (349)
T 1jmx_B 165 -------G--PDIYKMDV---KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD-- 230 (349)
T ss_dssp -------S--SSEEEECT---TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE--
T ss_pred -------c--CcEEEEeC---CCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc--
Confidence 1 23888885 4444332 221110 0111333333322111000
Q ss_pred cCceEEEEEcCCCCCCCcEEeec-CCCccccCCCCCCCeEecc-CCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEE
Q 002209 478 TRRTRTWVISPGSKDVAPRILFD-RSSEDVYSDPGSPMMRRTS-TGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLD 555 (953)
Q Consensus 478 ~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 555 (953)
....++.++..++ +...+.- ........ +.||| ||++++.. .. .|+
T Consensus 231 -~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~sp~dg~~l~~~--~~---------------------~v~ 278 (349)
T 1jmx_B 231 -LLYGYLSVDLKTG--KTHTQEFADLTELYFT------GLRSPKDPNQIYGV--LN---------------------RLA 278 (349)
T ss_dssp -EEEEEEEEETTTC--CEEEEEEEECSSCEEE------EEECSSCTTEEEEE--ES---------------------EEE
T ss_pred -cceeEEEEeccCC--cEEecccccCCCccee------eEecCCCCCEEEEE--cC---------------------eEE
Confidence 1123444676664 2222211 11111111 67899 99988766 11 499
Q ss_pred EEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002209 556 LFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (953)
Q Consensus 556 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~ 622 (953)
+||+.+++.......... . ...+|++||+.+++. .. ...++++++.+++..
T Consensus 279 ~~d~~~~~~~~~~~~~~~-----~-------~~~~~s~dg~~l~~~-~~---~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 279 KYDLKQRKLIKAANLDHT-----Y-------YCVAFDKKGDKLYLG-GT---FNDLAVFNPDTLEKV 329 (349)
T ss_dssp EEETTTTEEEEEEECSSC-----C-------CEEEECSSSSCEEEE-SB---SSEEEEEETTTTEEE
T ss_pred EEECccCeEEEEEcCCCC-----c-------cceEECCCCCEEEEe-cC---CCeEEEEecccccee
Confidence 999999887655543321 0 124689999988763 21 267999998887643
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-11 Score=132.23 Aligned_cols=275 Identities=9% Similarity=0.060 Sum_probs=167.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++| |||++|+....+ +.|.+|++.+ + .....+... ..
T Consensus 20 ~v~~~~~-~~~~~l~s~~~d---------------------------------g~v~vw~~~~-~--~~~~~~~~~--~~ 60 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVSRD---------------------------------GTVRLWSKDD-Q--WLGTVVYTG--QG 60 (313)
T ss_dssp CEEEEEE-EETTEEEEEETT---------------------------------SEEEEEEESS-S--EEEEEEEEC--SS
T ss_pred CcEEEEe-cCCCEEEEEEcC---------------------------------CcEEEEECCC-C--EEEEEeecC--Cc
Confidence 4667888 999999988775 3689999843 1 122333322 34
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc----eeecccCCCccccccccceEEecCCeEEEEEecCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK----ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~----~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 265 (953)
.+....|+|||+.|+.... ...|.++++.... ...+..+.. .+..+.| +++.|+...
T Consensus 61 ~v~~~~~~~~~~~l~~~~~---------dg~i~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~--~~~~l~~~~--- 121 (313)
T 3odt_A 61 FLNSVCYDSEKELLLFGGK---------DTMINGVPLFATSGEDPLYTLIGHQG-----NVCSLSF--QDGVVISGS--- 121 (313)
T ss_dssp CEEEEEEETTTTEEEEEET---------TSCEEEEETTCCTTSCC-CEECCCSS-----CEEEEEE--ETTEEEEEE---
T ss_pred cEEEEEECCCCCEEEEecC---------CCeEEEEEeeecCCCCcccchhhccc-----CEEEEEe--cCCEEEEEe---
Confidence 7889999999999988652 4566666765432 122211111 2556777 566666551
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccCC-CC
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSP-DE 343 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~Sp-DG 343 (953)
..+.|.+++.......+... ..+..+.|+| ++
T Consensus 122 ----------------------------------------------~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (313)
T 3odt_A 122 ----------------------------------------------WDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSE 155 (313)
T ss_dssp ----------------------------------------------TTSEEEEEETTEEEEEEECCSSCEEEEEEEETTT
T ss_pred ----------------------------------------------CCCCEEEEcCCcEEEecccCCCceeEEEEccCCC
Confidence 12345555532223333333 6677788888 99
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
+.|+..+.+ +.|.+||.. ...+.+... ....+..++|+|+++ ++..
T Consensus 156 ~~l~~~~~d-------------~~i~i~d~~-~~~~~~~~~------------~~~~i~~~~~~~~~~-~~~~------- 201 (313)
T 3odt_A 156 NKFLTASAD-------------KTIKLWQND-KVIKTFSGI------------HNDVVRHLAVVDDGH-FISC------- 201 (313)
T ss_dssp TEEEEEETT-------------SCEEEEETT-EEEEEECSS------------CSSCEEEEEEEETTE-EEEE-------
T ss_pred CEEEEEECC-------------CCEEEEecC-ceEEEEecc------------CcccEEEEEEcCCCe-EEEc-------
Confidence 998887744 389999933 223333221 112346799999998 4443
Q ss_pred CcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCC
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 503 (953)
+..+.+.+||+ .++.....+..+...+..+.|+||| .|+....++ .++++++.++ +.........
T Consensus 202 ------~~dg~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg----~v~iwd~~~~--~~~~~~~~~~ 266 (313)
T 3odt_A 202 ------SNDGLIKLVDM--HTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDR----TVRIWSKENG--SLKQVITLPA 266 (313)
T ss_dssp ------ETTSEEEEEET--TTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTS----EEEEECTTTC--CEEEEEECSS
T ss_pred ------cCCCeEEEEEC--CchhhhhhhhcCCceEEEEEEecCC-CEEEEecCC----EEEEEECCCC--ceeEEEeccC
Confidence 34568999996 2333334455566778889999999 465554332 6777888775 3333333333
Q ss_pred ccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceE
Q 002209 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (953)
Q Consensus 504 ~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~ 565 (953)
..+.. +.|+|||+.++ ... ...|++||+.+++..
T Consensus 267 ~~i~~------~~~~~~~~~~~-~~~---------------------dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 267 ISIWS------VDCMSNGDIIV-GSS---------------------DNLVRIFSQEKSRWA 300 (313)
T ss_dssp SCEEE------EEECTTSCEEE-EET---------------------TSCEEEEESCGGGCC
T ss_pred ceEEE------EEEccCCCEEE-EeC---------------------CCcEEEEeCCCCcee
Confidence 33333 78999998544 321 124999999876644
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.43 E-value=6.7e-11 Score=129.20 Aligned_cols=290 Identities=8% Similarity=0.016 Sum_probs=166.2
Q ss_pred CcccceEeccCC-CeEEEEEeeccccCCCCcceEEEEECCCCce-----e-ecccCCCccccccccceEEecCCeEEEEE
Q 002209 189 AKLNFVTWSQDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-----R-PLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG-~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~-----~-~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
..+...+|+||+ +.|+..+ . +..|.+||+..++. . .+..+.. .+..+.|+|||+.|+..
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s-------~--D~~i~vWd~~~~~~~~~~~~~~l~~h~~-----~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSAS-------R--DKTIIMWKLTRDETNYGIPQRALRGHSH-----FVSDVVISSDGQFALSG 104 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEE-------T--TSCEEEEEECCSSSCSEEEEEEECCCSS-----CEEEEEECTTSSEEEEE
T ss_pred CCEEEEEEeCCCCCEEEEEc-------C--CCeEEEEECCCCCcccceeeEEEeCCCC-----CEEEEEECCCCCEEEEE
Confidence 479999999985 5555543 2 34566666655432 1 1222222 27789999999999866
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCC-Ccccccc
Q 002209 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-AVYTSLD 338 (953)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~-~~~~~~~ 338 (953)
. ..+.|..++. .+.... .... .......
T Consensus 105 ~-------------------------------------------------~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (340)
T 4aow_A 105 S-------------------------------------------------WDGTLRLWDLTTGTTTRRFVGHTKDVLSVA 135 (340)
T ss_dssp E-------------------------------------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred c-------------------------------------------------ccccceEEeecccceeeeecCCCCceeEEE
Confidence 1 1234556666 443222 2222 5566778
Q ss_pred cCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002209 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (953)
Q Consensus 339 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~ 418 (953)
++++++.|+..+.+. .+.+||+.+.......... ....+..++|++++...++...
T Consensus 136 ~~~~~~~l~s~s~d~-------------~~~~~d~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~s~ 191 (340)
T 4aow_A 136 FSSDNRQIVSGSRDK-------------TIKLWNTLGVCKYTVQDES-----------HSEWVSCVRFSPNSSNPIIVSC 191 (340)
T ss_dssp ECTTSSCEEEEETTS-------------CEEEECTTSCEEEEECSSS-----------CSSCEEEEEECSCSSSCEEEEE
T ss_pred EeecCccceeecCCC-------------eEEEEEeCCCceEEEEecc-----------ccCcccceEEccCCCCcEEEEE
Confidence 999999998877443 7889998765544332211 1123456789999876655422
Q ss_pred eccCCCcccccccCCeEEEEecCCCCCCC-ceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEE
Q 002209 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (953)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~d~~~~~g~~-~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 497 (953)
+....+.++++ ..++ ...+..+...+..++|+|||+.|+..+.++ .+.++|+.+. +...
T Consensus 192 -----------~~d~~i~i~d~---~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg----~i~iwd~~~~--~~~~ 251 (340)
T 4aow_A 192 -----------GWDKLVKVWNL---ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG----QAMLWDLNEG--KHLY 251 (340)
T ss_dssp -----------ETTSCEEEEET---TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC----EEEEEETTTT--EEEE
T ss_pred -----------cCCCEEEEEEC---CCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCC----eEEEEEeccC--ceee
Confidence 23456888886 3333 233445566778899999999988776543 4556676663 2222
Q ss_pred eecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCccccee
Q 002209 498 LFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 577 (953)
Q Consensus 498 ~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~ 577 (953)
..... ..+.. +.|+|++..++... + ..|++||+.++........... ..
T Consensus 252 ~~~~~-~~v~~------~~~~~~~~~~~~~~-d---------------------~~i~iwd~~~~~~~~~~~~~~~--~~ 300 (340)
T 4aow_A 252 TLDGG-DIINA------LCFSPNRYWLCAAT-G---------------------PSIKIWDLEGKIIVDELKQEVI--ST 300 (340)
T ss_dssp EEECS-SCEEE------EEECSSSSEEEEEE-T---------------------TEEEEEETTTTEEEEEECCC------
T ss_pred eecCC-ceEEe------eecCCCCceeeccC-C---------------------CEEEEEECCCCeEEEeccccce--ee
Confidence 22221 11221 67899987665443 1 2489999987765443332211 00
Q ss_pred eeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCC
Q 002209 578 TTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (953)
Q Consensus 578 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~ 620 (953)
....-...-...+|+|||+.|+..... ..|++|++.+|+
T Consensus 301 ~~~~h~~~v~~l~~s~dg~~l~sgs~D----g~v~iW~~~tGt 339 (340)
T 4aow_A 301 SSKAEPPQCTSLAWSADGQTLFAGYTD----NLVRVWQVTIGT 339 (340)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEETT----SCEEEEEEEC--
T ss_pred eccCCCCCEEEEEECCCCCEEEEEeCC----CEEEEEeCCCcC
Confidence 000000000124789999977643332 348888888875
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.43 E-value=6e-12 Score=134.89 Aligned_cols=206 Identities=12% Similarity=-0.007 Sum_probs=125.0
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|..++....- . -|.||++||.+... ..| ......|++ .|.|++ .|.+|+
T Consensus 16 ~~g~~l~y~~~G--------~--g~~lvllHG~~~~~--------------~~w-~~~~~~L~~-~~~via---~Dl~G~ 66 (294)
T 1ehy_A 16 LPDVKIHYVREG--------A--GPTLLLLHGWPGFW--------------WEW-SKVIGPLAE-HYDVIV---PDLRGF 66 (294)
T ss_dssp CSSCEEEEEEEE--------C--SSEEEEECCSSCCG--------------GGG-HHHHHHHHT-TSEEEE---ECCTTS
T ss_pred ECCEEEEEEEcC--------C--CCEEEEECCCCcch--------------hhH-HHHHHHHhh-cCEEEe---cCCCCC
Confidence 578888765532 1 36799999964211 111 123334544 499999 555788
Q ss_pred CChhhhh------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC
Q 002209 727 GDEEAND------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800 (953)
Q Consensus 727 G~~~~~~------~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~ 800 (953)
|.|..+. .......+|+.+.++.+ ..+++.|+||||||.+++.+|.++|++++++|++++........
T Consensus 67 G~S~~~~~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~ 140 (294)
T 1ehy_A 67 GDSEKPDLNDLSKYSLDKAADDQAALLDAL------GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPV 140 (294)
T ss_dssp TTSCCCCTTCGGGGCHHHHHHHHHHHHHHT------TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC---
T ss_pred CCCCCCccccccCcCHHHHHHHHHHHHHHc------CCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecCCCCCcchh
Confidence 8875431 22556677777766654 23589999999999999999999999999999988632110000
Q ss_pred ----------cC--ccc--------ccch-------------------hh--hhHHHHHh-----------------c--
Q 002209 801 ----------FG--FQN--------EDRT-------------------LW--EATSTYVE-----------------M-- 820 (953)
Q Consensus 801 ----------~~--~~~--------~~~~-------------------~~--~~~~~~~~-----------------~-- 820 (953)
+. +.. .... .+ +..+.+.. .
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (294)
T 1ehy_A 141 YFGLGHVHESWYSQFHQLDMAVEVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIR 220 (294)
T ss_dssp --------CCHHHHHTTCHHHHHHHTSCHHHHHHHHHHHHHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSS
T ss_pred hccchhccCceEEEecCcchhHHHhccchhHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHhcCCcccchHHHHHHHHHh
Confidence 00 000 0000 00 00001100 0
Q ss_pred Cccc-----ccCCCCCcEEEEEeCCCCCCCCch-HHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 821 SPFM-----SANKLKKPILLVHGEEDNNSGTLT-MQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 821 sp~~-----~~~~i~~P~Li~~G~~D~~v~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
.... .+.++++|+|+++|++|..+| . .....+.+.+ ...+++++|++||.. ..+..+.+.+.+.+||
T Consensus 221 ~~~~~~~~~~l~~i~~P~Lvi~G~~D~~~~--~~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl 293 (294)
T 1ehy_A 221 PDAALWTDLDHTMSDLPVTMIWGLGDTCVP--YAPLIEFVPKYY----SNYTMETIEDCGHFL-MVEKPEIAIDRIKTAF 293 (294)
T ss_dssp SSCCCCCTGGGSCBCSCEEEEEECCSSCCT--THHHHHHHHHHB----SSEEEEEETTCCSCH-HHHCHHHHHHHHHHHC
T ss_pred hhhhhcCCcccCcCCCCEEEEEeCCCCCcc--hHHHHHHHHHHc----CCCceEEeCCCCCCh-hhhCHHHHHHHHHHHh
Confidence 0001 122789999999999999876 4 3344443332 247999999999975 3566777778888875
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-11 Score=135.21 Aligned_cols=283 Identities=12% Similarity=0.129 Sum_probs=177.3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
......|++ +.++.... ...|+++++++++...+..... ...+..++|+|||+.|++..
T Consensus 95 ~~~~~~~s~--~~l~~~~~---------d~~v~lw~~~~~~~~~~~~~~~---~~~v~~v~~s~~~~~l~~~~------- 153 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVAL---------ERNVYVWNADSGSVSALAETDE---STYVASVKWSHDGSFLSVGL------- 153 (401)
T ss_dssp TCBCEEECT--TSEEEEEE---------TTEEEEEETTTCCEEEEEECCT---TCCEEEEEECTTSSEEEEEE-------
T ss_pred eEEEEeecC--CCEEEEEC---------CCeEEEeeCCCCcEeEeeecCC---CCCEEEEEECCCCCEEEEEC-------
Confidence 455677775 44555442 5689999999988766654421 11277899999999998761
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCC-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDG~~l 346 (953)
..+.|.++++ +++ ...+... ..+..++| +++.|
T Consensus 154 ------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l 189 (401)
T 4aez_A 154 ------------------------------------------GNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVL 189 (401)
T ss_dssp ------------------------------------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEE
T ss_pred ------------------------------------------CCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEE
Confidence 2245777888 664 4444444 67777888 66777
Q ss_pred EEEEecCCccccccCCCCCcceEEEecc-Cc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTD-GI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
+..+.+ +.|.+||+. .+ ....+..+. ..+..+.|+|||+.++..
T Consensus 190 ~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~s~-------- 235 (401)
T 4aez_A 190 SSGSRS-------------GAIHHHDVRIANHQIGTLQGHS-------------SEVCGLAWRSDGLQLASG-------- 235 (401)
T ss_dssp EEEETT-------------SEEEEEETTSSSCEEEEEECCS-------------SCEEEEEECTTSSEEEEE--------
T ss_pred EEEcCC-------------CCEEEEecccCcceeeEEcCCC-------------CCeeEEEEcCCCCEEEEE--------
Confidence 777633 389999997 33 233333322 345679999999877665
Q ss_pred cccccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCC
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 503 (953)
+..+.|.+||+ ..++. ..+..+...+..++|+|++..+++..... ....|.++|+.++ +........
T Consensus 236 -----~~d~~v~iwd~---~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs-~d~~i~i~d~~~~--~~~~~~~~~- 303 (401)
T 4aez_A 236 -----GNDNVVQIWDA---RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT-MDKQIHFWNAATG--ARVNTVDAG- 303 (401)
T ss_dssp -----ETTSCEEEEET---TCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCT-TTCEEEEEETTTC--CEEEEEECS-
T ss_pred -----eCCCeEEEccC---CCCCccEEecCCcceEEEEEECCCCCCEEEEecCC-CCCEEEEEECCCC--CEEEEEeCC-
Confidence 44568999996 33333 33455667788899999998887765311 1126777787765 333333222
Q ss_pred ccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeec
Q 002209 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583 (953)
Q Consensus 504 ~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 583 (953)
..+.. +.|+|+|+.++..... ....+++||+.+++...+....+..
T Consensus 304 ~~v~~------~~~s~~~~~l~~~~g~-------------------~dg~i~v~~~~~~~~~~~~~~~~h~--------- 349 (401)
T 4aez_A 304 SQVTS------LIWSPHSKEIMSTHGF-------------------PDNNLSIWSYSSSGLTKQVDIPAHD--------- 349 (401)
T ss_dssp SCEEE------EEECSSSSEEEEEECT-------------------TTCEEEEEEEETTEEEEEEEEECCS---------
T ss_pred CcEEE------EEECCCCCeEEEEeec-------------------CCCcEEEEecCCccceeEEEecCCC---------
Confidence 12222 7899999998876411 1224999999887666554322110
Q ss_pred cCCccccccccCCEEEEEEecCCCCceEEEEECCCCCe
Q 002209 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (953)
Q Consensus 584 ~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~ 621 (953)
..-...+|+|||+.++.... -..+.++++.+++.
T Consensus 350 ~~v~~~~~s~dg~~l~s~~~----dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 350 TRVLYSALSPDGRILSTAAS----DENLKFWRVYDGDH 383 (401)
T ss_dssp SCCCEEEECTTSSEEEEECT----TSEEEEEECCC---
T ss_pred CCEEEEEECCCCCEEEEEeC----CCcEEEEECCCCcc
Confidence 00112468999987764332 24688999877754
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=137.99 Aligned_cols=210 Identities=15% Similarity=0.101 Sum_probs=126.3
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCC
Q 002209 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (953)
Q Consensus 648 dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G 727 (953)
+|.+++...+-+++ .|+||++||.+... ..|. .....| +++|.|+++ +.+|+|
T Consensus 7 ~g~~l~~~~~g~~~--------~~~vv~lHG~~~~~-----------~~~~----~~~~~L-~~~~~v~~~---D~~G~G 59 (264)
T 3ibt_A 7 NGTLMTYSESGDPH--------APTLFLLSGWCQDH-----------RLFK----NLAPLL-ARDFHVICP---DWRGHD 59 (264)
T ss_dssp TTEECCEEEESCSS--------SCEEEEECCTTCCG-----------GGGT----THHHHH-TTTSEEEEE---CCTTCS
T ss_pred CCeEEEEEEeCCCC--------CCeEEEEcCCCCcH-----------hHHH----HHHHHH-HhcCcEEEE---ccccCC
Confidence 67777766654321 57899999964221 1121 233444 456999994 556777
Q ss_pred Chhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCcccEEEEcccCCCCCC------
Q 002209 728 DEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTL------ 798 (953)
Q Consensus 728 ~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~d~~~------ 798 (953)
.+... ........+|+.++++.+ +.+++.|+||||||.+++.++.++ |++++++|++++......
T Consensus 60 ~S~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~ 133 (264)
T 3ibt_A 60 AKQTDSGDFDSQTLAQDLLAFIDAK------GIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLLQPHPGFWQQL 133 (264)
T ss_dssp TTCCCCSCCCHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCSSCCHHHHHHH
T ss_pred CCCCCccccCHHHHHHHHHHHHHhc------CCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCCCcChhhcchh
Confidence 77542 223566677777766654 335899999999999999999999 999999999987651000
Q ss_pred ----CCcCcc------------cc-cch---------------hhhh-HHHHH-----hcCcccccCCCCCcEEEEEeCC
Q 002209 799 ----TPFGFQ------------NE-DRT---------------LWEA-TSTYV-----EMSPFMSANKLKKPILLVHGEE 840 (953)
Q Consensus 799 ----~~~~~~------------~~-~~~---------------~~~~-~~~~~-----~~sp~~~~~~i~~P~Li~~G~~ 840 (953)
....+. .. ... .|.. ...+. ..++...+.++++|+|++||..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~ 213 (264)
T 3ibt_A 134 AEGQHPTEYVAGRQSFFDEWAETTDNADVLNHLRNEMPWFHGEMWQRACREIEANYRTWGSPLDRMDSLPQKPEICHIYS 213 (264)
T ss_dssp HHTTCTTTHHHHHHHHHHHHHTTCCCHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHSSHHHHHHTCSSCCEEEEEEC
T ss_pred hcccChhhHHHHHHHHHHHhcccCCcHHHHHHHHHhhhhccchhHHHHHHHhccchhhccchhhcccccCCCeEEEEecC
Confidence 000000 00 000 0000 00000 0112255678899999998755
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
|...+.+......+.+. -...++++++++||... .+..+.+.+.+.+||+
T Consensus 214 ~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 263 (264)
T 3ibt_A 214 QPLSQDYRQLQLEFAAG----HSWFHPRHIPGRTHFPS-LENPVAVAQAIREFLQ 263 (264)
T ss_dssp CSCCHHHHHHHHHHHHH----CTTEEEEECCCSSSCHH-HHCHHHHHHHHHHHTC
T ss_pred CccchhhHHHHHHHHHh----CCCceEEEcCCCCCcch-hhCHHHHHHHHHHHHh
Confidence 54432113333444333 23469999999999753 5566777788888864
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.43 E-value=7.4e-13 Score=142.14 Aligned_cols=209 Identities=14% Similarity=0.083 Sum_probs=130.0
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCC
Q 002209 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (953)
Q Consensus 645 ~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~ 724 (953)
...+|..++...+- ..|+||++||++... ..|. .....|+++ |.|+++ +.+
T Consensus 15 ~~~~g~~l~~~~~g----------~~~~vv~lHG~~~~~-----------~~~~----~~~~~L~~~-~~vi~~---D~~ 65 (301)
T 3kda_A 15 REVDGVKLHYVKGG----------QGPLVMLVHGFGQTW-----------YEWH----QLMPELAKR-FTVIAP---DLP 65 (301)
T ss_dssp EEETTEEEEEEEEE----------SSSEEEEECCTTCCG-----------GGGT----TTHHHHTTT-SEEEEE---CCT
T ss_pred EeeCCeEEEEEEcC----------CCCEEEEECCCCcch-----------hHHH----HHHHHHHhc-CeEEEE---cCC
Confidence 33488888866652 147899999964221 1121 234456666 999994 456
Q ss_pred CCCChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC-
Q 002209 725 GEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSK-IAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP- 800 (953)
Q Consensus 725 G~G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~-i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~- 800 (953)
|+|.+... ........+|+.++++.+ +.++ +.|+||||||.+++.++.++|++++++|++++........
T Consensus 66 G~G~S~~~~~~~~~~~~~~~l~~~l~~l------~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~ 139 (301)
T 3kda_A 66 GLGQSEPPKTGYSGEQVAVYLHKLARQF------SPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIPDARIYR 139 (301)
T ss_dssp TSTTCCCCSSCSSHHHHHHHHHHHHHHH------CSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSCCSSGGGGG
T ss_pred CCCCCCCCCCCccHHHHHHHHHHHHHHc------CCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccCCCCCCccc
Confidence 77777543 223566777777777765 2345 9999999999999999999999999999998753210000
Q ss_pred ------------cCc------cccc------------chh---------h---hhHHHHH--------------------
Q 002209 801 ------------FGF------QNED------------RTL---------W---EATSTYV-------------------- 818 (953)
Q Consensus 801 ------------~~~------~~~~------------~~~---------~---~~~~~~~-------------------- 818 (953)
+.+ .... ... + +..+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (301)
T 3kda_A 140 FPAFTAQGESLVWHFSFFAADDRLAETLIAGKERFFLEHFIKSHASNTEVFSERLLDLYARSYAKPHSLNASFEYYRALN 219 (301)
T ss_dssp SBSEETTEECSSTHHHHHHCSTTHHHHHHTTCHHHHHHHHHHHTCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHTHH
T ss_pred hhhhcchhhhhhhhHHHhhcCcchHHHHhccchHHHHHHHHHhccCCcccCCHHHHHHHHHHhccccccchHHHHHHhhc
Confidence 000 0000 000 0 0000000
Q ss_pred -----hcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 002209 819 -----EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (953)
Q Consensus 819 -----~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~f 893 (953)
.......+.++++|+|+++|++| ++ ......+. ..-..+++++++++||.. ..+..+.+.+.|.+|
T Consensus 220 ~~~~~~~~~~~~l~~i~~P~l~i~G~~D--~~--~~~~~~~~----~~~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~~ 290 (301)
T 3kda_A 220 ESVRQNAELAKTRLQMPTMTLAGGGAGG--MG--TFQLEQMK----AYAEDVEGHVLPGCGHWL-PEECAAPMNRLVIDF 290 (301)
T ss_dssp HHHHHHHHHTTSCBCSCEEEEEECSTTS--CT--THHHHHHH----TTBSSEEEEEETTCCSCH-HHHTHHHHHHHHHHH
T ss_pred cchhhcccchhhccccCcceEEEecCCC--CC--hhHHHHHH----hhcccCeEEEcCCCCcCc-hhhCHHHHHHHHHHH
Confidence 00011122378999999999999 54 55555543 333457999999999986 356677777777777
Q ss_pred HHHh
Q 002209 894 LQKY 897 (953)
Q Consensus 894 l~~~ 897 (953)
+++.
T Consensus 291 l~~~ 294 (301)
T 3kda_A 291 LSRG 294 (301)
T ss_dssp HTTS
T ss_pred HhhC
Confidence 7653
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-11 Score=132.96 Aligned_cols=245 Identities=8% Similarity=0.041 Sum_probs=155.2
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc----eeecccCCCccccccccceEEecCCe-EEEEEec
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK----ARPLFQSPDIYLNAIFDNFVWVNNST-LLVCTIP 263 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~----~~~lt~~~~~~~~~~~~~~~wspDg~-~l~~~~~ 263 (953)
..+...+|+|||+.|+.... ...|+++++++++ ...+..+.. .+..++|+|||+ .|+...
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~---------d~~v~iw~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~- 76 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSW---------DGSLTVYKFDIQAKNVDLLQSLRYKH-----PLLCCNFIDNTDLQIYVGT- 76 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEET---------TSEEEEEEEETTTTEEEEEEEEECSS-----CEEEEEEEESSSEEEEEEE-
T ss_pred CcEEEEEEcCCCCEEEEEcC---------CCeEEEEEeCCCCccccceeeeecCC-----ceEEEEECCCCCcEEEEEc-
Confidence 46889999999999988652 4567777777766 444443332 277899999999 888661
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CCceeEeCC--C-Ccccccc
Q 002209 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGP--P-AVYTSLD 338 (953)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g~~~~l~~--~-~~~~~~~ 338 (953)
..+.|.++++ +++...+.. . ..+..++
T Consensus 77 ------------------------------------------------~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~ 108 (342)
T 1yfq_A 77 ------------------------------------------------VQGEILKVDLIGSPSFQALTNNEANLGICRIC 108 (342)
T ss_dssp ------------------------------------------------TTSCEEEECSSSSSSEEECBSCCCCSCEEEEE
T ss_pred ------------------------------------------------CCCeEEEEEeccCCceEeccccCCCCceEEEE
Confidence 1245667776 345566655 5 7788999
Q ss_pred cCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC---------ceEEEeccCCCcccCCccccccccCccceeeccC
Q 002209 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG---------IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 339 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g---------~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
|+| ++.|+..+.+ +.|.+||+.. +.. +.... ....+..++|+||
T Consensus 109 ~~~-~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~~--~~~~~-----------~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 109 KYG-DDKLIAASWD-------------GLIEVIDPRNYGDGVIAVKNLN--SNNTK-----------VKNKIFTMDTNSS 161 (342)
T ss_dssp EET-TTEEEEEETT-------------SEEEEECHHHHTTBCEEEEESC--SSSSS-----------SCCCEEEEEECSS
T ss_pred eCC-CCEEEEEcCC-------------CeEEEEcccccccccccccCCe--eeEEe-----------eCCceEEEEecCC
Confidence 999 9888887744 3899999874 211 11111 1134567899998
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCC-CCC-ce-EEeecccccCCeeecc-CCceEEEEEecccCceEEEE
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ-GEG-PE-ILHKLDLRYGGISWCD-DSLALVYESWYKTRRTRTWV 485 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-g~~-~~-~l~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~ 485 (953)
+ ++.. ...+.|.+|++ .. +.. .. ........+..+.|+| ||+.|+....++ ..++|.
T Consensus 162 ~--l~~~-------------~~d~~i~i~d~--~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg--~i~i~~ 222 (342)
T 1yfq_A 162 R--LIVG-------------MNNSQVQWFRL--PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG--RVAVEF 222 (342)
T ss_dssp E--EEEE-------------ESTTEEEEEES--SCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS--EEEEEE
T ss_pred c--EEEE-------------eCCCeEEEEEC--CccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC--cEEEEE
Confidence 8 4433 33558999996 22 222 22 2233455677899999 999888876543 236666
Q ss_pred EcCCCCC--CCcEEeecCCCc---------cccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeE
Q 002209 486 ISPGSKD--VAPRILFDRSSE---------DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFL 554 (953)
Q Consensus 486 ~d~~~~~--~~~~~~~~~~~~---------~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 554 (953)
++..+.. .+.......... .+.. +.|+|||++|+....+ ..|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~s~~~~~l~~~~~d---------------------g~i 275 (342)
T 1yfq_A 223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS------IEFSPRHKFLYTAGSD---------------------GII 275 (342)
T ss_dssp CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEE------EEECTTTCCEEEEETT---------------------SCE
T ss_pred EcCCCcccccccceeeecccccccccccceeEEE------EEEcCCCCEEEEecCC---------------------ceE
Confidence 6654100 122222222211 2222 7899999998876632 149
Q ss_pred EEEECCCCceEEEec
Q 002209 555 DLFDINTGSKERIWE 569 (953)
Q Consensus 555 ~~~d~~~~~~~~l~~ 569 (953)
++||+.+++......
T Consensus 276 ~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 276 SCWNLQTRKKIKNFA 290 (342)
T ss_dssp EEEETTTTEEEEECC
T ss_pred EEEcCccHhHhhhhh
Confidence 999999887655443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-11 Score=135.27 Aligned_cols=298 Identities=12% Similarity=0.018 Sum_probs=175.0
Q ss_pred CCCCceecC-CCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeec----
Q 002209 110 PLPALSFSP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQG---- 184 (953)
Q Consensus 110 ~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~---- 184 (953)
.+..++||| ||++|+....+ +.|.+|++.. +..........
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~d---------------------------------g~i~iw~~~~-~~~~~~~~~~~~~~~ 90 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSD---------------------------------GVIVLYDLEN-SSRQSYYTCKAVCSI 90 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETT---------------------------------SCEEEEECCC-CSSSSCEEECEEEEE
T ss_pred cEEEEEEecCCCCEEEEEcCC---------------------------------CeEEEEECCC-CcccceEeccccccc
Confidence 567889999 99999998775 3678999854 21111111000
Q ss_pred -----CCCCCcccceEecc-CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecC---C
Q 002209 185 -----FPDGAKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN---S 255 (953)
Q Consensus 185 -----~~~~~~~~~~~wSP-DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD---g 255 (953)
......+....|+| +++.|+... ....|.++++.+++.......... +..+.|+|. +
T Consensus 91 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 156 (408)
T 4a11_B 91 GRDHPDVHRYSVETVQWYPHDTGMFTSSS---------FDKTLKVWDTNTLQTADVFNFEET-----VYSHHMSPVSTKH 156 (408)
T ss_dssp CTTCTTCCSSCEEEEEECTTCTTCEEEEE---------TTSEEEEEETTTTEEEEEEECSSC-----EEEEEECSSCSSC
T ss_pred cccccccCCCcEEEEEEccCCCcEEEEEe---------CCCeEEEeeCCCCccceeccCCCc-----eeeeEeecCCCCC
Confidence 01234788999999 666666644 256888999998887665544332 557778874 4
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCC-C
Q 002209 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-A 332 (953)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~ 332 (953)
..|+... ..+.|.++++ +++ ...+... .
T Consensus 157 ~~~~~~~-------------------------------------------------~~~~v~~~d~~~~~~~~~~~~~~~ 187 (408)
T 4a11_B 157 CLVAVGT-------------------------------------------------RGPKVQLCDLKSGSCSHILQGHRQ 187 (408)
T ss_dssp CEEEEEE-------------------------------------------------SSSSEEEEESSSSCCCEEECCCCS
T ss_pred cEEEEEc-------------------------------------------------CCCeEEEEeCCCcceeeeecCCCC
Confidence 4676551 2346778888 664 4444444 7
Q ss_pred cccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce--EEEeccCCCcc--cCCccccccccCccceeecc
Q 002209 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAE--DIPIAFNSVRKGMRSINWRS 408 (953)
Q Consensus 333 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~--~~~l~~~~~~~--~~p~~~~~~~~~~~~~~wsp 408 (953)
.+..++|+|||++++++... .+.|.+||+..+. ...+....... ............+..++|+|
T Consensus 188 ~v~~~~~~~~~~~ll~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 188 EILAVSWSPRYDYILATASA------------DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp CEEEEEECSSCTTEEEEEET------------TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cEEEEEECCCCCcEEEEEcC------------CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 78899999999975544422 2389999997432 22222211110 01111123334567899999
Q ss_pred CCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE-Eeec----ccccCCeeec-cCCceEEEEEecccCceE
Q 002209 409 DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-LHKL----DLRYGGISWC-DDSLALVYESWYKTRRTR 482 (953)
Q Consensus 409 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~-l~~~----~~~~~~~~~S-pDg~~l~~~~~~~~~~~~ 482 (953)
||+.++.. +..+.+.+|++ ..++... +... ........++ ..+..+++...++ .
T Consensus 256 ~~~~l~~~-------------~~dg~i~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 315 (408)
T 4a11_B 256 DGLHLLTV-------------GTDNRMRLWNS---SNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS----T 315 (408)
T ss_dssp TSSEEEEE-------------ETTSCEEEEET---TTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT----E
T ss_pred CCCEEEEe-------------cCCCeEEEEEC---CCCccceeccccccccccccceeEEecCCCceEEEEecCC----E
Confidence 99977665 44567899996 3333221 1111 0111112222 3345566655443 6
Q ss_pred EEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCC
Q 002209 483 TWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTG 562 (953)
Q Consensus 483 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~ 562 (953)
+.+++..++ +...........+.. +.|+|||++|+....+. .|++||+.++
T Consensus 316 i~v~d~~~~--~~~~~~~~~~~~v~~------~~~s~~~~~l~s~~~dg---------------------~i~iw~~~~~ 366 (408)
T 4a11_B 316 IAVYTVYSG--EQITMLKGHYKTVDC------CVFQSNFQELYSGSRDC---------------------NILAWVPSLY 366 (408)
T ss_dssp EEEEETTTC--CEEEEECCCSSCEEE------EEEETTTTEEEEEETTS---------------------CEEEEEECC-
T ss_pred EEEEECcCC--cceeeeccCCCeEEE------EEEcCCCCEEEEECCCC---------------------eEEEEeCCCC
Confidence 777787764 334444434333333 78999999988776322 3999999877
Q ss_pred ceE
Q 002209 563 SKE 565 (953)
Q Consensus 563 ~~~ 565 (953)
+..
T Consensus 367 ~~~ 369 (408)
T 4a11_B 367 EPV 369 (408)
T ss_dssp ---
T ss_pred Ccc
Confidence 643
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-11 Score=134.04 Aligned_cols=269 Identities=9% Similarity=0.033 Sum_probs=147.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||| .||..+.+ +.|.+|++..+. ......+....+..
T Consensus 16 ~v~~~~~s~~--~las~~~D---------------------------------~~i~lw~~~~~~-~~~~~~~~~~~h~~ 59 (330)
T 2hes_X 16 KIWSFDFSQG--ILATGSTD---------------------------------RKIKLVSVKYDD-FTLIDVLDETAHKK 59 (330)
T ss_dssp CEEEEEEETT--EEEEEESS---------------------------------SCEEEEECSSSC-CEEEEEECTTCCCS
T ss_pred ceeeeccCCC--EEEEEcCC---------------------------------CEEEEEEecCCC-eEEEEEEecCCccC
Confidence 4667888988 77776654 367999985311 11111221111234
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCC-------cee-ecccCCCccccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-------KAR-PLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g-------~~~-~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
.+...+|+|||+.|+.... ...|.+++++.+ +.. .+..+.. .+..++|+|||+.|+..
T Consensus 60 ~v~~v~~sp~~~~las~s~---------D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~sp~g~~las~ 125 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAGSF---------DSTVSIWAKEESADRTFEMDLLAIIEGHEN-----EVKGVAWSNDGYYLATC 125 (330)
T ss_dssp CEEEEEECTTSSEEEEEET---------TSCEEEEEC-------CCCEEEEEEC---------CEEEEEECTTSCEEEEE
T ss_pred CEEEEEECCCCCEEEEEeC---------CCcEEEEEcccCcCccccceeEEEEcCCCC-----cEEEEEECCCCCEEEEE
Confidence 6889999999998887552 345666666432 111 1222222 27789999999999876
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C-Cc----eeEeCCC-Ccc
Q 002209 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D-GT----VKEIGPP-AVY 334 (953)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~-g~----~~~l~~~-~~~ 334 (953)
. ..+.|.++|+ . +. ...+... ..+
T Consensus 126 s-------------------------------------------------~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v 156 (330)
T 2hes_X 126 S-------------------------------------------------RDKSVWIWETDESGEEYECISVLQEHSQDV 156 (330)
T ss_dssp E-------------------------------------------------TTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred e-------------------------------------------------CCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence 2 1134555565 2 21 2233444 678
Q ss_pred cccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC--C
Q 002209 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP--S 412 (953)
Q Consensus 335 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~--~ 412 (953)
..++|+|||+.|+..+.+. .|.+|++..+..+.+.... +....+..++|+||+. .
T Consensus 157 ~~v~~~p~~~~l~s~s~D~-------------~i~iW~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 157 KHVIWHPSEALLASSSYDD-------------TVRIWKDYDDDWECVAVLN----------GHEGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp EEEEECSSSSEEEEEETTS-------------CEEEEEEETTEEEEEEEEC----------CCSSCEEEEEECCSSSSCE
T ss_pred EEEEECCCCCEEEEEcCCC-------------eEEEEECCCCCeeEEEEcc----------CCCCcEEEEEecCCCCeeE
Confidence 8999999999998887443 8999998755333222211 1113456789999943 3
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEecCCCCCCC----c--eE---Eee-cccccCCeeeccCCceEEEEEecccCceE
Q 002209 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG----P--EI---LHK-LDLRYGGISWCDDSLALVYESWYKTRRTR 482 (953)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~----~--~~---l~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 482 (953)
++-. +....|.+|++ .++. . .. +.. +...+..++|++++ .|+..+.++ ..+
T Consensus 214 l~s~-------------s~D~~v~iw~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg--~v~ 274 (330)
T 2hes_X 214 LCSG-------------SDDSTVRVWKY---MGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG--VLA 274 (330)
T ss_dssp EEEE-------------ETTSCEEEEEE---EEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS--CEE
T ss_pred EEEE-------------eCCCeEEEEEe---cCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC--EEE
Confidence 3322 33456777775 2110 0 11 111 34556778999776 566555433 236
Q ss_pred EEEEcCCCCCCCcEEe---ecCCCc-cccCCCCCCCeEecc--CCCEEEEEee
Q 002209 483 TWVISPGSKDVAPRIL---FDRSSE-DVYSDPGSPMMRRTS--TGTYVIAKIK 529 (953)
Q Consensus 483 l~~~d~~~~~~~~~~~---~~~~~~-~~~~~~~~p~~~~Sp--DG~~l~~~~~ 529 (953)
||... ++ +...+ ...... .+.. +.|+| ||+.|+....
T Consensus 275 iw~~~--~~--~~~~~~~~~~~h~~~~v~~------v~~~~~~~~~~las~s~ 317 (330)
T 2hes_X 275 VYEEV--DG--EWKVFAKRALCHGVYEINV------VKWLELNGKTILATGGD 317 (330)
T ss_dssp EEEEE--TT--EEEEEEEESCTTTTSCEEE------EEEC-----CCEEEEET
T ss_pred EEEcC--CC--ceEEEeccccccccceEEE------EEEecCCCceEEEEecC
Confidence 66554 32 11111 111111 2222 67999 7888887763
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.9e-11 Score=134.03 Aligned_cols=273 Identities=9% Similarity=-0.023 Sum_probs=138.7
Q ss_pred ceEEEEccCCCCCCceeeeecC--CCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECC-CCceeecccCCCc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGF--PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-TGKARPLFQSPDI 240 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~--~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~-~g~~~~lt~~~~~ 240 (953)
.|+++++..+. ++.+.+... .....+...+|||||++|+.... . .|.+++++ +|+..++...+..
T Consensus 15 ~i~~~~~d~~~--g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~---------~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 15 AIFTVQFDDEK--LTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM---------K-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEEEETTT--TEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB---------T-EEEEEEEEETTEEEEEEEEECC
T ss_pred cEEEEEEECCC--CCEEEeeEEccCCCCCCcEEEECCCCCEEEEEcc---------c-eEEEEEECCCCCEEEeeEeecC
Confidence 46776663221 333333221 12225778999999998876442 1 67777765 6666544322110
Q ss_pred cccccccceEEecCCeEE-EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEE
Q 002209 241 YLNAIFDNFVWVNNSTLL-VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (953)
Q Consensus 241 ~~~~~~~~~~wspDg~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 319 (953)
. ....++|+|||+.| +++.. .... ..+.+ +. +...+.+.++
T Consensus 83 g---~~~~~~~spdg~~l~~~~~~-~~~~-----------~~~~~-----------------~~------~~~~g~v~v~ 124 (365)
T 1jof_A 83 G---HPRANDADTNTRAIFLLAAK-QPPY-----------AVYAN-----------------PF------YKFAGYGNVF 124 (365)
T ss_dssp S---SGGGGCTTSCCEEEEEEECS-STTC-----------CEEEE-----------------EE------SSSCCEEEEE
T ss_pred C---CCccEEECCCCCEEEEEEec-CCcc-----------eeccc-----------------ee------ecCCceEEEE
Confidence 0 13468899999964 33311 0000 00000 00 0011234444
Q ss_pred Ec--CCcee-EeC-----CCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccC
Q 002209 320 SL--DGTVK-EIG-----PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDI 390 (953)
Q Consensus 320 ~~--~g~~~-~l~-----~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~ 390 (953)
++ +|+.. .+. ....+..++|||||++|+++... ...|++|+++ +++.+.+......
T Consensus 125 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~------------~~~v~~~~~~~~g~~~~~~~~~~~--- 189 (365)
T 1jof_A 125 SVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT------------ANKLWTHRKLASGEVELVGSVDAP--- 189 (365)
T ss_dssp EECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTSCEEEEEEEECS---
T ss_pred ccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC------------CCEEEEEEECCCCCEEEeeeEecC---
Confidence 44 45432 222 12566788999999988765421 2379999998 5655433221100
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCce----EEeecc------c----
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE----ILHKLD------L---- 456 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~----~l~~~~------~---- 456 (953)
....+++.++|||||+.++.. .. ..+.+.+++.+. ..++.. .+.... .
T Consensus 190 -----~~g~~p~~~~~spdg~~l~v~-~~-----------~~~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~ 251 (365)
T 1jof_A 190 -----DPGDHPRWVAMHPTGNYLYAL-ME-----------AGNRICEYVIDP-ATHMPVYTHHSFPLIPPGIPDRDPETG 251 (365)
T ss_dssp -----STTCCEEEEEECTTSSEEEEE-ET-----------TTTEEEEEEECT-TTCCEEEEEEEEESSCTTCCCBCTTTS
T ss_pred -----CCCCCCCEeEECCCCCEEEEE-EC-----------CCCeEEEEEEeC-CCCcEEEccceEEcCCCCcCCcccccc
Confidence 001345789999999976554 11 123555555311 233322 121111 1
Q ss_pred ---ccCCee-eccCCceEEEEEeccc----CceEEEEEcCCCCCCCcEEe---ecCCCccccCCCCCCCeEecc---CCC
Q 002209 457 ---RYGGIS-WCDDSLALVYESWYKT----RRTRTWVISPGSKDVAPRIL---FDRSSEDVYSDPGSPMMRRTS---TGT 522 (953)
Q Consensus 457 ---~~~~~~-~SpDg~~l~~~~~~~~----~~~~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~Sp---DG~ 522 (953)
....++ |||||++|+.+..... ....+|.++. ++ +...+ .......... +.||| ||+
T Consensus 252 ~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~-~g--~~~~~~~~~~~~~~~~~~------~a~sp~~~dg~ 322 (365)
T 1jof_A 252 KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-CG--SIEKQLFLSPTPTSGGHS------NAVSPCPWSDE 322 (365)
T ss_dssp SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-TS--CEEEEEEEEECSSCCTTC------CCEEECTTCTT
T ss_pred cccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC-CC--CEEEeeeeeecCCCCccc------ceecCCCcCCC
Confidence 245688 9999999876543321 1345666653 32 33321 1111111111 67899 899
Q ss_pred EEEEEe
Q 002209 523 YVIAKI 528 (953)
Q Consensus 523 ~l~~~~ 528 (953)
+|+...
T Consensus 323 ~l~v~~ 328 (365)
T 1jof_A 323 WMAITD 328 (365)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 988765
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-11 Score=140.26 Aligned_cols=258 Identities=9% Similarity=0.025 Sum_probs=148.5
Q ss_pred CCCCCceecCCC---------CEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCce
Q 002209 109 PPLPALSFSPQR---------DKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE 179 (953)
Q Consensus 109 ~~~~~~~~SPDG---------~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~ 179 (953)
..+..++|+|++ ++||........ . ..+++.......+.++.|.||++.+ +.....
T Consensus 134 ~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------~--------~~~~~~~~laS~s~D~tI~iWd~~~-~~~~~~ 198 (524)
T 2j04_B 134 GLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------E--------PLNEHLEMFDKEKHSSCIQIFKMNT-STLHCV 198 (524)
T ss_dssp C--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------CEEEEEEEEET-TTCCEE
T ss_pred CceeEEEecccCCCCccCcCCeEEEEEEecccC------C--------ccchhhhhhccCCCCceEEEEEccC-CCCCce
Confidence 357889999998 788887754110 0 0112222223334456789999854 221111
Q ss_pred --eeeecCCCCCcccceEeccC------CCeEEEEEeeccccCCCCcceEEEEECCCCcee------------ecccCCC
Q 002209 180 --IEIQGFPDGAKLNFVTWSQD------GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR------------PLFQSPD 239 (953)
Q Consensus 180 --~~l~~~~~~~~~~~~~wSPD------G~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~------------~lt~~~~ 239 (953)
..+... ...+...+|+|+ ++.||.... ...|.++++.+++.. .+..+.
T Consensus 199 ~~~~l~~~--~~~V~~v~wsp~~~~~~~~~~LAs~s~---------DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~- 266 (524)
T 2j04_B 199 KVQTIVHS--FGEVWDLKWHEGCHAPHLVGCLSFVSQ---------EGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD- 266 (524)
T ss_dssp EEEEEEEC--CCSEEEEEECSSCCCSSSSCEEEEEET---------TSCEEEEECCCCSSSSSEEECCCSCSEEECCTT-
T ss_pred EEEEEEec--CCcEEEEEECCCCCCCCCCceEEEEec---------CCeEEEEEcCCCccccccceeecCceEEEEcCC-
Confidence 122221 235888999997 567776542 446667777665321 111111
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEE
Q 002209 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (953)
Q Consensus 240 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 319 (953)
..+..++|++++ .|+... ..+.|.++
T Consensus 267 ----~~v~sv~~s~~~-~lasgs-------------------------------------------------~DgtV~lW 292 (524)
T 2j04_B 267 ----SLITTFDFLSPT-TVVCGF-------------------------------------------------KNGFVAEF 292 (524)
T ss_dssp ----TCEEEEEESSSS-EEEEEE-------------------------------------------------TTSEEEEE
T ss_pred ----CCEEEEEecCCC-eEEEEe-------------------------------------------------CCCEEEEE
Confidence 226789999876 565441 23467777
Q ss_pred Ec-CCc-e-eEeCCC-Cccccc--ccCCCC-cEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCC
Q 002209 320 SL-DGT-V-KEIGPP-AVYTSL--DPSPDE-KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIP 391 (953)
Q Consensus 320 ~~-~g~-~-~~l~~~-~~~~~~--~~SpDG-~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p 391 (953)
|+ ++. . ..+... ..+.++ .|+||| +.||..+.+. .|.+||+.... .+.+..+...
T Consensus 293 D~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~-------------tvklWD~~~~~~~~~~~~~~~~---- 355 (524)
T 2j04_B 293 DLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDG-------------YFYIFNPKDIATTKTTVSRFRG---- 355 (524)
T ss_dssp ETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTS-------------EEEEECGGGHHHHCEEEEECSC----
T ss_pred ECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCC-------------eEEEEECCCCCccccccccccc----
Confidence 88 553 2 223333 667777 689999 7777766443 89999997533 2222211100
Q ss_pred ccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEE
Q 002209 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALV 471 (953)
Q Consensus 392 ~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~ 471 (953)
..+..++|+|||+.++.. +..+.+.+||+ ..+.....+..+...+..++|||||+.|+
T Consensus 356 -------~~v~~v~fsp~~~~l~s~-------------~~d~tv~lwd~--~~~~~~~~l~gH~~~V~sva~Sp~g~~l~ 413 (524)
T 2j04_B 356 -------SNLVPVVYCPQIYSYIYS-------------DGASSLRAVPS--RAAFAVHPLVSRETTITAIGVSRLHPMVL 413 (524)
T ss_dssp -------CSCCCEEEETTTTEEEEE-------------CSSSEEEEEET--TCTTCCEEEEECSSCEEEEECCSSCCBCE
T ss_pred -------CcccceEeCCCcCeEEEe-------------CCCCcEEEEEC--cccccceeeecCCCceEEEEeCCCCCeEE
Confidence 124578999999875544 34557889996 33444466777888889999999999988
Q ss_pred EEEecccCceEEEEEcCCC
Q 002209 472 YESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 472 ~~~~~~~~~~~l~~~d~~~ 490 (953)
.++.++ .+.++++..
T Consensus 414 Sgs~Dg----tv~lwd~~~ 428 (524)
T 2j04_B 414 AGSADG----SLIITNAAR 428 (524)
T ss_dssp EEETTT----EEECCBSCS
T ss_pred EEECCC----EEEEEechH
Confidence 776554 344445543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.40 E-value=8e-12 Score=135.48 Aligned_cols=247 Identities=13% Similarity=0.199 Sum_probs=148.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++||..+.+ +.|.|||+.. +.......+.++. .
T Consensus 15 ~V~~v~~s~~g~~lasgs~D---------------------------------~~v~lwd~~~-~~~~~~~~l~gH~--~ 58 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSD---------------------------------RSVKIFDVRN-GGQILIADLRGHE--G 58 (316)
T ss_dssp CEEEEEECGGGCEEEEEETT---------------------------------TEEEEEEEET-TEEEEEEEEECCS--S
T ss_pred eEEEeeEcCCCCEEEEEeCC---------------------------------CeEEEEEecC-CCcEEEEEEcCCC--c
Confidence 56788999999999998875 3679999854 1000112333332 4
Q ss_pred cccceEecc--CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecC--CeEEEEEecCC
Q 002209 190 KLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN--STLLVCTIPLL 265 (953)
Q Consensus 190 ~~~~~~wSP--DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD--g~~l~~~~~~~ 265 (953)
.+....|+| +|+.|+..+ ....|.++|+++++...+..... ....+..++|+|| |..|+...
T Consensus 59 ~V~~v~~~~~~~~~~l~s~s---------~D~~v~iWd~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~g~~lasgs--- 124 (316)
T 3bg1_A 59 PVWQVAWAHPMYGNILASCS---------YDRKVIIWREENGTWEKSHEHAG--HDSSVNSVCWAPHDYGLILACGS--- 124 (316)
T ss_dssp CEEEEEECCGGGSSCEEEEE---------TTSCEEEECCSSSCCCEEEEECC--CSSCCCEEEECCTTTCSCEEEEC---
T ss_pred cEEEEEeCCCCCCCEEEEEE---------CCCEEEEEECCCCcceEEEEccC--CCCceEEEEECCCCCCcEEEEEc---
Confidence 688999986 488888754 24567778887764322211111 1112778999998 77777651
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-cee--Ee-CCC-Cccccccc
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVK--EI-GPP-AVYTSLDP 339 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~--~l-~~~-~~~~~~~~ 339 (953)
..+.|.++++ ++ ... .. ... ..+..++|
T Consensus 125 ----------------------------------------------~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (316)
T 3bg1_A 125 ----------------------------------------------SDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSW 158 (316)
T ss_dssp ----------------------------------------------SSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEE
T ss_pred ----------------------------------------------CCCCEEEEecCCCCCcceeeeeccccCCcceEEE
Confidence 1134555566 33 221 11 222 56778899
Q ss_pred CCCC-----------------cEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCc
Q 002209 340 SPDE-----------------KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGM 401 (953)
Q Consensus 340 SpDG-----------------~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~ 401 (953)
+|++ ++|+..+. .+.|.+||+.++ ..+.+.... +....+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~-------------D~~v~lWd~~~~~~~~~~~~l~----------~h~~~V 215 (316)
T 3bg1_A 159 APAVVPGSLIDHPSGQKPNYIKRFASGGC-------------DNLIKLWKEEEDGQWKEEQKLE----------AHSDWV 215 (316)
T ss_dssp CCCCCC------CCSCCCCCCCBEECCBT-------------TSBCCEEEECTTSCEEEEECCB----------CCSSCE
T ss_pred ccccCCccccccccccCccccceEEEecC-------------CCeEEEEEeCCCCccceeeecc----------cCCCce
Confidence 9983 55554442 348999999743 222222211 122345
Q ss_pred cceeeccCC----CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC--ceEEeecccccCCeeeccCCceEEEEEe
Q 002209 402 RSINWRSDK----PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG--PEILHKLDLRYGGISWCDDSLALVYESW 475 (953)
Q Consensus 402 ~~~~wspDg----~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~--~~~l~~~~~~~~~~~~SpDg~~l~~~~~ 475 (953)
..++|+||+ +.|+-. +....|.+|+++....+. ...+......+..++|+|||+.|+..+.
T Consensus 216 ~~v~~sp~~~~~~~~las~-------------s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 216 RDVAWAPSIGLPTSTIASC-------------SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG 282 (316)
T ss_dssp EEEECCCCSSCSCCEEEEE-------------ETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred EEEEecCCCCCCCceEEEE-------------cCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence 789999997 434433 445678899861111111 2345555666788999999999988876
Q ss_pred cccCceEEEEEcCCC
Q 002209 476 YKTRRTRTWVISPGS 490 (953)
Q Consensus 476 ~~~~~~~l~~~d~~~ 490 (953)
++. .+||..+..+
T Consensus 283 D~~--v~lw~~~~~g 295 (316)
T 3bg1_A 283 DNK--VTLWKESVDG 295 (316)
T ss_dssp SSC--EEEEEECTTS
T ss_pred CCe--EEEEEECCCC
Confidence 543 4788776543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-11 Score=137.14 Aligned_cols=241 Identities=12% Similarity=0.142 Sum_probs=151.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCC-CC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DG 188 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~-~~ 188 (953)
.+..++|||||++||....+ +.|.||++.. ...+.+..+. +.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d---------------------------------g~i~iw~~~~----~~~~~~~~~~~h~ 55 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSD---------------------------------KTIKIFEVEG----ETHKLIDTLTGHE 55 (379)
T ss_dssp CEEEEEECSSSSEEEEEETT---------------------------------SCEEEEEEET----TEEEEEEEECCCS
T ss_pred cEEEEEEcCCCCEEEEEECC---------------------------------CcEEEEecCC----CcceeeeEecCCC
Confidence 56788999999999988765 3678999842 1222222222 22
Q ss_pred CcccceEeccC--CCeEEEEEeeccccCCCCcceEEEEECCCCceeec--ccCCCccccccccceEEecC--CeEEEEEe
Q 002209 189 AKLNFVTWSQD--GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNN--STLLVCTI 262 (953)
Q Consensus 189 ~~~~~~~wSPD--G~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~~~~wspD--g~~l~~~~ 262 (953)
..+..+.|+|+ |+.|+.... +..|.++|+++++...+ ...... .+..++|+|+ |+.|++..
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~~~~ 122 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSY---------DGKVLIWKEENGRWSQIAVHAVHSA----SVNSVQWAPHEYGPLLLVAS 122 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEET---------TSCEEEEEEETTEEEEEEEECCCSS----CEEEEEECCGGGCSEEEEEE
T ss_pred CcEEEEEeCCCCCCCEEEEecc---------CCEEEEEEcCCCceeEeeeecCCCc----ceEEEEeCCCCCCCEEEEec
Confidence 47889999988 888887542 45677777777752222 221221 2778999999 88888761
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC---ceeEeCCC-Cccccc
Q 002209 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG---TVKEIGPP-AVYTSL 337 (953)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g---~~~~l~~~-~~~~~~ 337 (953)
..+.|.++++ ++ ....+... ..+..+
T Consensus 123 -------------------------------------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~ 153 (379)
T 3jrp_A 123 -------------------------------------------------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 153 (379)
T ss_dssp -------------------------------------------------TTSEEEEEECCTTSCCCEEEEECCTTCEEEE
T ss_pred -------------------------------------------------CCCcEEEEecCCCCceeeEEecCCCCceEEE
Confidence 2245667777 44 22233333 678889
Q ss_pred ccCC-------------CCcEEEEEEecCCccccccCCCCCcceEEEeccCce-E-EEeccCCCcccCCccccccccCcc
Q 002209 338 DPSP-------------DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-V-RELCDLPLAEDIPIAFNSVRKGMR 402 (953)
Q Consensus 338 ~~Sp-------------DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~-~~l~~~~~~~~~p~~~~~~~~~~~ 402 (953)
+|+| ||+.|+..+.+. .|.+||+..+. . ..+.... .....+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-------------~i~i~d~~~~~~~~~~~~~~~----------~h~~~v~ 210 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGADN-------------LVKIWKYNSDAQTYVLESTLE----------GHSDWVR 210 (379)
T ss_dssp EECCCC----------CTTCEEEEEETTS-------------CEEEEEEETTTTEEEEEEEEC----------CCSSCEE
T ss_pred EEcCccccccccccCCCCCCEEEEEeCCC-------------eEEEEEecCCCcceeeEEEEe----------cccCcEe
Confidence 9999 799998887443 89999997432 1 1111111 1113456
Q ss_pred ceeeccC---CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC--ceEEe---ecccccCCeeeccCCceEEEEE
Q 002209 403 SINWRSD---KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG--PEILH---KLDLRYGGISWCDDSLALVYES 474 (953)
Q Consensus 403 ~~~wspD---g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~--~~~l~---~~~~~~~~~~~SpDg~~l~~~~ 474 (953)
.++|+|| ++.++.. +..+.+.+|++ ..+.. ...+. .....+..++|+|||+.|+...
T Consensus 211 ~~~~sp~~~~~~~l~s~-------------~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 211 DVAWSPTVLLRSYLASV-------------SQDRTCIIWTQ--DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 275 (379)
T ss_dssp EEEECCCCSSSEEEEEE-------------ETTSCEEEEEE--SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred EEEECCCCCCCCeEEEE-------------eCCCEEEEEeC--CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence 7999999 6655554 34557888886 22221 12221 1344566789999999998876
Q ss_pred ecccCceEEEEEcCC
Q 002209 475 WYKTRRTRTWVISPG 489 (953)
Q Consensus 475 ~~~~~~~~l~~~d~~ 489 (953)
.++ ..++|.++..
T Consensus 276 ~dg--~i~iw~~~~~ 288 (379)
T 3jrp_A 276 GDN--KVTLWKENLE 288 (379)
T ss_dssp SSS--SEEEEEEEET
T ss_pred CCC--cEEEEeCCCC
Confidence 643 3467777643
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.8e-11 Score=141.80 Aligned_cols=291 Identities=10% Similarity=0.035 Sum_probs=173.6
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc------eeecccCCCccccccccceEEecCCeEEEEEe
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK------ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~------~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~ 262 (953)
..+...+|+||+..++.+.. . ...|.++++..+. .+.+..+.. .+..++|+|||+.|+...
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s------~--D~~i~~W~~~~~~~~~~~~~~~~~~h~~-----~v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSAS------R--DKSIILWKLTKDDKAYGVAQRRLTGHSH-----FVEDVVLSSDGQFALSGS 449 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEE------T--TSEEEEEECCCSTTCSCEEEEEEECCSS-----CEEEEEECTTSSEEEEEE
T ss_pred ceeEEEEecCCCCCEEEEEe------C--CCcEEEEEccCCCcccccccceecCCCC-----cEEEEEECCCCCEEEEEe
Confidence 46889999998755554433 2 4466666665432 123333332 277899999999998661
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCC-Cccccccc
Q 002209 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDP 339 (953)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~ 339 (953)
..+.|.++|+ ++. .+.+... ..+..++|
T Consensus 450 -------------------------------------------------~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~ 480 (694)
T 3dm0_A 450 -------------------------------------------------WDGELRLWDLAAGVSTRRFVGHTKDVLSVAF 480 (694)
T ss_dssp -------------------------------------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred -------------------------------------------------CCCcEEEEECCCCcceeEEeCCCCCEEEEEE
Confidence 2246778888 774 3444444 77889999
Q ss_pred CCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002209 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (953)
Q Consensus 340 SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~ 419 (953)
||||++|+..+.+. .|.+||+.+.....+..... ++...+..++|+|++..-.+.+.
T Consensus 481 s~~~~~l~s~s~D~-------------~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~~l~s~- 537 (694)
T 3dm0_A 481 SLDNRQIVSASRDR-------------TIKLWNTLGECKYTISEGGE---------GHRDWVSCVRFSPNTLQPTIVSA- 537 (694)
T ss_dssp CTTSSCEEEEETTS-------------CEEEECTTSCEEEEECSSTT---------SCSSCEEEEEECSCSSSCEEEEE-
T ss_pred eCCCCEEEEEeCCC-------------EEEEEECCCCcceeeccCCC---------CCCCcEEEEEEeCCCCcceEEEE-
Confidence 99999999887443 89999987665444432111 12234567899999854222211
Q ss_pred ccCCCcccccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEe
Q 002209 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (953)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 498 (953)
+..+.|.+||+ ..++. ..+..+...+..++|||||+.|+..+.++ .|.++|+.++ +....
T Consensus 538 ----------s~d~~v~vwd~---~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg----~i~iwd~~~~--~~~~~ 598 (694)
T 3dm0_A 538 ----------SWDKTVKVWNL---SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG----VVLLWDLAEG--KKLYS 598 (694)
T ss_dssp ----------ETTSCEEEEET---TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS----BCEEEETTTT--EEEEC
T ss_pred ----------eCCCeEEEEEC---CCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC----eEEEEECCCC--ceEEE
Confidence 33557899996 33333 34556677788899999999988876554 3444455553 21111
Q ss_pred ecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceee
Q 002209 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYET 578 (953)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~ 578 (953)
... ...+.. +.||||+.+|+.... ..+.+||+.+++.......+.......
T Consensus 599 ~~~-~~~v~~------~~~sp~~~~l~~~~~----------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~ 649 (694)
T 3dm0_A 599 LEA-NSVIHA------LCFSPNRYWLCAATE----------------------HGIKIWDLESKSIVEDLKVDLKAEAEK 649 (694)
T ss_dssp CBC-SSCEEE------EEECSSSSEEEEEET----------------------TEEEEEETTTTEEEEEECCCCC-----
T ss_pred ecC-CCcEEE------EEEcCCCcEEEEEcC----------------------CCEEEEECCCCCChhhhcccccccccc
Confidence 111 111222 789999988876541 138999998887655433221100000
Q ss_pred -----eEe---eccCCccccccccCCEEEEEEecCCCCceEEEEEC
Q 002209 579 -----TVA---LMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSW 616 (953)
Q Consensus 579 -----~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~ 616 (953)
... ....-...+|||||+.|+..... ..|.+|++
T Consensus 650 ~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D----g~i~iW~i 691 (694)
T 3dm0_A 650 ADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD----GVIRVWGI 691 (694)
T ss_dssp -----------CCCCEEEEEECTTSSEEEEEETT----SEEEEEEC
T ss_pred ccccccccCCceeEEeeeEEEcCCCCEEEEEcCC----CeEEEEec
Confidence 000 00000124689999977643332 35777775
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.39 E-value=6e-12 Score=134.14 Aligned_cols=214 Identities=14% Similarity=0.069 Sum_probs=127.3
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCC-ccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR-IGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 648 dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
+|.+++...+-++. ...|+||++||.+..... .|.. +.......| +++|.|+.+|. +|+
T Consensus 19 ~~~~l~y~~~G~~~------~~~p~vvllHG~~~~~~~----------~~~~~~~~~~~~~L-~~~~~vi~~D~---~G~ 78 (286)
T 2qmq_A 19 PYGSVTFTVYGTPK------PKRPAIFTYHDVGLNYKS----------CFQPLFRFGDMQEI-IQNFVRVHVDA---PGM 78 (286)
T ss_dssp TTEEEEEEEESCCC------TTCCEEEEECCTTCCHHH----------HHHHHHTSHHHHHH-HTTSCEEEEEC---TTT
T ss_pred CCeEEEEEeccCCC------CCCCeEEEeCCCCCCchh----------hhhhhhhhchhHHH-hcCCCEEEecC---CCC
Confidence 67788777664321 125889999995311000 0000 000023334 45799999555 566
Q ss_pred CChhh--hhh----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC
Q 002209 727 GDEEA--NDR----FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800 (953)
Q Consensus 727 G~~~~--~~~----~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~ 800 (953)
|.+.. ... .....++|+.++++.+ +.+++.|+||||||.+++.++..+|++++++|++++........
T Consensus 79 G~s~~~~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 152 (286)
T 2qmq_A 79 EEGAPVFPLGYQYPSLDQLADMIPCILQYL------NFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWM 152 (286)
T ss_dssp STTCCCCCTTCCCCCHHHHHHTHHHHHHHH------TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCHH
T ss_pred CCCCCCCCCCCCccCHHHHHHHHHHHHHHh------CCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCCcccchh
Confidence 55422 111 4566777777777665 23589999999999999999999999999999998854321100
Q ss_pred -c-------------------Cccccc----chhhhh-------------HHHHH----hcCc----ccccCCCCCcEEE
Q 002209 801 -F-------------------GFQNED----RTLWEA-------------TSTYV----EMSP----FMSANKLKKPILL 835 (953)
Q Consensus 801 -~-------------------~~~~~~----~~~~~~-------------~~~~~----~~sp----~~~~~~i~~P~Li 835 (953)
+ .+.... ....+. ...+. .... ...+.++++|+|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~li 232 (286)
T 2qmq_A 153 DWAAHKLTGLTSSIPDMILGHLFSQEELSGNSELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKCPVML 232 (286)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHSCHHHHHTTCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCCCCCSEETTEECCCSCEEE
T ss_pred hhhhhhhccccccchHHHHHHHhcCCCCCcchHHHHHHHHHHHhcCCcchHHHHHHHHhhhhhhhhhhchhccCCCCEEE
Confidence 0 000000 000000 00010 0011 1245678999999
Q ss_pred EEeCCCCCCCCchHHHHHHHHHHHhCCC-cEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 836 VHGEEDNNSGTLTMQSDRFFNALKGHGA-LCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 836 ~~G~~D~~v~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
++|++|..+| .. .+.+++... .+++++++++||... .+....+.+.+.+||+
T Consensus 233 i~G~~D~~~~---~~----~~~~~~~~~~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 285 (286)
T 2qmq_A 233 VVGDQAPHED---AV----VECNSKLDPTQTSFLKMADSGGQPQ-LTQPGKLTEAFKYFLQ 285 (286)
T ss_dssp EEETTSTTHH---HH----HHHHHHSCGGGEEEEEETTCTTCHH-HHCHHHHHHHHHHHHC
T ss_pred EecCCCcccc---HH----HHHHHHhcCCCceEEEeCCCCCccc-ccChHHHHHHHHHHhc
Confidence 9999998864 22 233333333 589999999999863 4556777888888874
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-11 Score=133.92 Aligned_cols=262 Identities=9% Similarity=-0.020 Sum_probs=138.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++|+.+..+ .|.+|++..+| +...+...+.+.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~----------------------------------~v~~~~~~~~g---~~~~~~~~~~~g 83 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK----------------------------------KWSSFAVKSPT---EIVHEASHPIGG 83 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT----------------------------------EEEEEEEEETT---EEEEEEEEECCS
T ss_pred CCcEEEECCCCCEEEEEccc----------------------------------eEEEEEECCCC---CEEEeeEeecCC
Confidence 45678999999988655541 46788874223 222222121112
Q ss_pred cccceEeccCCCe-EEEEEeecccc-CCC----CcceEEEEECC-CCcee-eccc---CCCccccccccceEEecCCeEE
Q 002209 190 KLNFVTWSQDGKH-LAFSIRIDAED-SSS----SKLRVWVADVD-TGKAR-PLFQ---SPDIYLNAIFDNFVWVNNSTLL 258 (953)
Q Consensus 190 ~~~~~~wSPDG~~-laf~~~~~~~~-~~~----~~~~l~~~d~~-~g~~~-~lt~---~~~~~~~~~~~~~~wspDg~~l 258 (953)
....++|||||++ ++++.+.+... ..+ ....+.+++++ .|+.. .+.. ..... ...++|+|||++|
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~spdG~~l 159 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTG----IHGMVFDPTETYL 159 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCC----EEEEEECTTSSEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCc----ceEEEECCCCCEE
Confidence 3566899999997 34543200000 000 12344555544 24432 2221 01111 5688999999988
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CCceeEe---C--C-
Q 002209 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEI---G--P- 330 (953)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g~~~~l---~--~- 330 (953)
+++.. +...|+++++ +|+...+ . .
T Consensus 160 ~~~~~------------------------------------------------~~~~v~~~~~~~~g~~~~~~~~~~~~~ 191 (365)
T 1jof_A 160 YSADL------------------------------------------------TANKLWTHRKLASGEVELVGSVDAPDP 191 (365)
T ss_dssp EEEET------------------------------------------------TTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred EEEcC------------------------------------------------CCCEEEEEEECCCCCEEEeeeEecCCC
Confidence 76510 2245777776 4654332 1 1
Q ss_pred CCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc--CceEE----EeccCCCcccCCcccccccc-----
Q 002209 331 PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVR----ELCDLPLAEDIPIAFNSVRK----- 399 (953)
Q Consensus 331 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~~~----~l~~~~~~~~~p~~~~~~~~----- 399 (953)
......++|||||++|++.... .+.+.+|+.+ ++... .+...+.. +.+...
T Consensus 192 g~~p~~~~~spdg~~l~v~~~~------------~~~v~v~~~~~~~g~~~~~~~~~~~~~~~------~~g~~~~~~~~ 253 (365)
T 1jof_A 192 GDHPRWVAMHPTGNYLYALMEA------------GNRICEYVIDPATHMPVYTHHSFPLIPPG------IPDRDPETGKG 253 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTTCCEEEEEEEEESSCTT------CCCBCTTTSSB
T ss_pred CCCCCEeEECCCCCEEEEEECC------------CCeEEEEEEeCCCCcEEEccceEEcCCCC------cCCcccccccc
Confidence 2456778999999999877532 2367777654 33322 22222210 000000
Q ss_pred -Ccccee-eccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe---e-cccccCCeeecc---CCceE
Q 002209 400 -GMRSIN-WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---K-LDLRYGGISWCD---DSLAL 470 (953)
Q Consensus 400 -~~~~~~-wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~---~-~~~~~~~~~~Sp---Dg~~l 470 (953)
.+..++ |||||+.|+ ..++..+. ...+.|.++++ ...++...+. . .......++||| ||++|
T Consensus 254 ~~~~~i~~~spdG~~l~-v~~~~~~~------~~~~~i~v~~~--~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l 324 (365)
T 1jof_A 254 LYRADVCALTFSGKYMF-ASSRANKF------ELQGYIAGFKL--RDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWM 324 (365)
T ss_dssp SEEEEEEEECTTSSEEE-EEEEESST------TSCCEEEEEEE--CTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEE
T ss_pred cccccEEEECCCCCEEE-EECCCCCC------CCCCeEEEEEE--CCCCCEEEeeeeeecCCCCcccceecCCCcCCCEE
Confidence 245789 999999764 43322110 01236777775 1234444321 1 233456789999 89998
Q ss_pred EEEEecccCceEEEEEcC
Q 002209 471 VYESWYKTRRTRTWVISP 488 (953)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~ 488 (953)
+++...+ ....+|.++.
T Consensus 325 ~v~~~~~-~~v~v~~~~~ 341 (365)
T 1jof_A 325 AITDDQE-GWLEIYRWKD 341 (365)
T ss_dssp EEECSSS-CEEEEEEEET
T ss_pred EEEEcCC-CeEEEEEEch
Confidence 8775432 3235565553
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.1e-11 Score=145.42 Aligned_cols=110 Identities=10% Similarity=0.052 Sum_probs=66.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccc--------------------eeceEEecCCCC-CCcceeeeeceEEE
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEE--------------------KLAGLRIDGKCN-TRSRMSFYTGIGIH 168 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~-~~~~~~~~~~i~i~ 168 (953)
.+..++|||||++|+....++...++++..... .+..+.++|+.. .......++.| +|
T Consensus 100 ~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lW 178 (902)
T 2oaj_A 100 KITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TY 178 (902)
T ss_dssp CEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EE
T ss_pred CEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EE
Confidence 567889999999999988775544444433221 123455555421 11212223567 99
Q ss_pred EccCCCCCCc-eeeeecC-----C----------C-CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce
Q 002209 169 QLFPDGKLGQ-EIEIQGF-----P----------D-GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA 231 (953)
Q Consensus 169 ~~~~~g~~~~-~~~l~~~-----~----------~-~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~ 231 (953)
|+.. ++ .+.+... + . ...+....|||||++|+... .+..|.+||+.+|+.
T Consensus 179 d~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs---------~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 179 SLVE----NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH---------EDNSLVFWDANSGHM 245 (902)
T ss_dssp ETTT----TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE---------TTCCEEEEETTTCCE
T ss_pred ECCC----CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE---------CCCeEEEEECCCCcE
Confidence 9854 22 2222211 0 0 13578899999999998855 256788889988876
Q ss_pred ee
Q 002209 232 RP 233 (953)
Q Consensus 232 ~~ 233 (953)
..
T Consensus 246 ~~ 247 (902)
T 2oaj_A 246 IM 247 (902)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.38 E-value=5.7e-11 Score=131.04 Aligned_cols=241 Identities=11% Similarity=0.045 Sum_probs=140.4
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCC
Q 002209 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (953)
Q Consensus 109 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~ 188 (953)
..+..++|||||++||....+ .+.||++.. .........
T Consensus 20 ~~V~~v~fs~dg~~la~g~~~----------------------------------~~~iw~~~~----~~~~~~~~~--- 58 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTLK----------------------------------SFEIYNVHP----VAHIMSQEM--- 58 (355)
T ss_dssp CCCCEEEECTTSSEEEEECSS----------------------------------EEEEEEETT----EEEEEEEEC---
T ss_pred CceEEEEECCCCCEEEEEcCC----------------------------------EEEEEecCC----cceeeeeec---
Confidence 368899999999999987653 457888743 222111111
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+....|+++++.++.+.. +...|.++|..+++.......... +..+.|++++ +++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~--------~d~~v~iWd~~~~~~~~~~~~~~~-----v~~v~~~~~~--~~~~------- 116 (355)
T 3vu4_A 59 RHLSKVRMLHRTNYVAFVTG--------VKEVVHIWDDVKKQDVSRIKVDAP-----VKDLFLSREF--IVVS------- 116 (355)
T ss_dssp SCCCEEEECTTSSEEEEECS--------STTEEEEEETTTTEEEEEEECSSC-----EEEEEECSSE--EEEE-------
T ss_pred CCeEEEEEcCCCCEEEEEEC--------CccEEEEEECCCCcEEEEEECCCc-----eEEEEEcCCE--EEEE-------
Confidence 13677889999999887542 234899999988876543333321 6678888765 3322
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-c-eeEeCCCCcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-T-VKEIGPPAVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~-~~~l~~~~~~~~~~~SpDG~~ 345 (953)
....|.++++ ++ + ...+.. .....++++ +.
T Consensus 117 -------------------------------------------~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~ 149 (355)
T 3vu4_A 117 -------------------------------------------YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GL 149 (355)
T ss_dssp -------------------------------------------ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TE
T ss_pred -------------------------------------------EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cE
Confidence 1235677787 54 2 221111 222345666 67
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCC--CcccCC--ccccccccCccceeeccCCCCceEEEEecc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP--LAEDIP--IAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~--~~~~~p--~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
+++.+.. ..+.|.+||+..+......... .....| ..+.+....+..++|+|||+.++-.
T Consensus 150 la~~sg~-----------~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~----- 213 (355)
T 3vu4_A 150 LVYSNEF-----------NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC----- 213 (355)
T ss_dssp EEEEESS-----------CTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE-----
T ss_pred EEEeCCC-----------cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE-----
Confidence 8776311 2348999999854300000000 000000 0112233456789999999876655
Q ss_pred CCCcccccccCCe-EEEEecCCCCCCCceEEe-e-cccccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 422 GGDAKVEVTPRDI-IYTQQAEPVQGEGPEILH-K-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 422 ~~~~~~~~~~~~~-l~~~d~~~~~g~~~~~l~-~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
+..+. +.+||+ .++.....+. . +...+..++|||||+.|+..+.++. .++|.+.
T Consensus 214 --------s~d~~~v~iwd~--~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~--v~iw~~~ 270 (355)
T 3vu4_A 214 --------SQDGTIIRVFKT--EDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT--LHVFEIF 270 (355)
T ss_dssp --------ETTCSEEEEEET--TTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE--EEEEESS
T ss_pred --------eCCCCEEEEEEC--CCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE--EEEEEcc
Confidence 44555 899996 3333334444 2 5667788999999999988875542 2555543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.6e-11 Score=133.61 Aligned_cols=287 Identities=10% Similarity=0.010 Sum_probs=166.3
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCC-ce----eecccCCCccccccccceEEec-CCeEEEEEecC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-KA----RPLFQSPDIYLNAIFDNFVWVN-NSTLLVCTIPL 264 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g-~~----~~lt~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~ 264 (953)
.....++|+...+++. ..+...|.+++++.. +. ..+..+ ...+..++|+| |++.|+...
T Consensus 37 ~~~~~~~~~~~~~~~~--------~~~~g~i~v~~~~~~~~~~~~~~~~~~h-----~~~V~~~~~~p~~~~~l~s~s-- 101 (402)
T 2aq5_A 37 SGFCAVNPKFMALICE--------ASGGGAFLVLPLGKTGRVDKNVPLVCGH-----TAPVLDIAWCPHNDNVIASGS-- 101 (402)
T ss_dssp SCSEEECSSEEEEEBC--------CSSSCCEEEEETTCCEECCTTCCCBCCC-----SSCEEEEEECTTCTTEEEEEE--
T ss_pred CCcEEECCCeEEEEEE--------EcCCCEEEEEECccCCCCCCCCceEecC-----CCCEEEEEeCCCCCCEEEEEe--
Confidence 4457788766555442 234567888887543 21 112111 22377999999 888888661
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc--------eeEeCCC-Ccc
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--------VKEIGPP-AVY 334 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~--------~~~l~~~-~~~ 334 (953)
..+.|.++++ ++. ...+... ..+
T Consensus 102 -----------------------------------------------~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v 134 (402)
T 2aq5_A 102 -----------------------------------------------EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV 134 (402)
T ss_dssp -----------------------------------------------TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCE
T ss_pred -----------------------------------------------CCCeEEEEEccCCCCccccCCceEEecCCCCeE
Confidence 1245666676 442 3344434 778
Q ss_pred cccccCCCCc-EEEEEEecCCccccccCCCCCcceEEEeccCceEE-Ee--ccCCCcccCCccccccccCccceeeccCC
Q 002209 335 TSLDPSPDEK-YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-EL--CDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 335 ~~~~~SpDG~-~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l--~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..++|+|||+ .|+..+.+ +.|.+||+..++.. .+ ..+ ...+..++|+|||
T Consensus 135 ~~~~~~p~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~ 188 (402)
T 2aq5_A 135 GIVAWHPTAQNVLLSAGCD-------------NVILVWDVGTGAAVLTLGPDVH-------------PDTIYSVDWSRDG 188 (402)
T ss_dssp EEEEECSSBTTEEEEEETT-------------SCEEEEETTTTEEEEEECTTTC-------------CSCEEEEEECTTS
T ss_pred EEEEECcCCCCEEEEEcCC-------------CEEEEEECCCCCccEEEecCCC-------------CCceEEEEECCCC
Confidence 8999999995 55555433 38999999865543 33 221 1345679999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEE-eecccc-cCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EIL-HKLDLR-YGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l-~~~~~~-~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
+.++.. +..+.|.+||+ ..++. ..+ ..+... +..+.|+|||+.|+...... ....|.++|
T Consensus 189 ~~l~~~-------------~~d~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~-~d~~i~iwd 251 (402)
T 2aq5_A 189 ALICTS-------------CRDKRVRVIEP---RKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM-SERQVALWD 251 (402)
T ss_dssp SCEEEE-------------ETTSEEEEEET---TTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT-CCEEEEEEE
T ss_pred CEEEEE-------------ecCCcEEEEeC---CCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC-CCceEEEEc
Confidence 987766 44668999996 33332 223 223332 56789999999877763211 123677778
Q ss_pred CCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCc--eE
Q 002209 488 PGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS--KE 565 (953)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~--~~ 565 (953)
+.++..............+.. +.|+|||++|+..... ...|++||+.+++ ..
T Consensus 252 ~~~~~~~~~~~~~~~~~~v~~------~~~s~~~~~l~~~g~~--------------------dg~i~i~d~~~~~~~~~ 305 (402)
T 2aq5_A 252 TKHLEEPLSLQELDTSSGVLL------PFFDPDTNIVYLCGKG--------------------DSSIRYFEITSEAPFLH 305 (402)
T ss_dssp TTBCSSCSEEEECCCCSSCEE------EEEETTTTEEEEEETT--------------------CSCEEEEEECSSTTCEE
T ss_pred CccccCCceEEeccCCCceeE------EEEcCCCCEEEEEEcC--------------------CCeEEEEEecCCCcceE
Confidence 776522122222111122222 7899999988766521 1249999998877 44
Q ss_pred EEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEE
Q 002209 566 RIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQI 624 (953)
Q Consensus 566 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~L 624 (953)
.+...... ..-....|+|++..++. .. ..+.++++.+++.+.+
T Consensus 306 ~l~~~~~~----------~~v~~~~~sp~~~~~~s----~~--~~~~~~~l~~~~~~~i 348 (402)
T 2aq5_A 306 YLSMFSSK----------ESQRGMGYMPKRGLEVN----KC--EIARFYKLHERKCEPI 348 (402)
T ss_dssp EEEEECCS----------SCCSEEEECCGGGSCGG----GT--EEEEEEEEETTEEEEE
T ss_pred eecccccC----------CcccceEEeccccccee----cc--eeEEEEEcCCCcEEEE
Confidence 44332211 00122467777775441 11 2455666656655444
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-10 Score=124.56 Aligned_cols=273 Identities=13% Similarity=0.062 Sum_probs=167.7
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+....| |||+.|+... ....|.++++++++........... +..++|+|||+.|+...
T Consensus 19 ~~v~~~~~-~~~~~l~s~~---------~dg~v~vw~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~------ 78 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVS---------RDGTVRLWSKDDQWLGTVVYTGQGF----LNSVCYDSEKELLLFGG------ 78 (313)
T ss_dssp SCEEEEEE-EETTEEEEEE---------TTSEEEEEEESSSEEEEEEEECSSC----EEEEEEETTTTEEEEEE------
T ss_pred CCcEEEEe-cCCCEEEEEE---------cCCcEEEEECCCCEEEEEeecCCcc----EEEEEECCCCCEEEEec------
Confidence 46888899 9999988754 2567888888887655444333322 77899999999998762
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC---c-eeEeCCC-CcccccccCCC
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG---T-VKEIGPP-AVYTSLDPSPD 342 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g---~-~~~l~~~-~~~~~~~~SpD 342 (953)
..+.+.++++ +. + ...+... ..+..+.| +
T Consensus 79 -------------------------------------------~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~ 113 (313)
T 3odt_A 79 -------------------------------------------KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--Q 113 (313)
T ss_dssp -------------------------------------------TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--E
T ss_pred -------------------------------------------CCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--c
Confidence 1234455555 32 1 3333333 56667777 7
Q ss_pred CcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeecc-CCCCceEEEEecc
Q 002209 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS-DKPSTLYWAETQD 421 (953)
Q Consensus 343 G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wsp-Dg~~i~~~~~~~~ 421 (953)
++.|+..+.+ +.|.+|| .+.....+..+. ..+..+.|+| +++.++..
T Consensus 114 ~~~l~~~~~d-------------~~i~~~d-~~~~~~~~~~~~-------------~~v~~~~~~~~~~~~l~~~----- 161 (313)
T 3odt_A 114 DGVVISGSWD-------------KTAKVWK-EGSLVYNLQAHN-------------ASVWDAKVVSFSENKFLTA----- 161 (313)
T ss_dssp TTEEEEEETT-------------SEEEEEE-TTEEEEEEECCS-------------SCEEEEEEEETTTTEEEEE-----
T ss_pred CCEEEEEeCC-------------CCEEEEc-CCcEEEecccCC-------------CceeEEEEccCCCCEEEEE-----
Confidence 8888877644 3899999 433334443322 2335678888 77766554
Q ss_pred CCCcccccccCCeEEEEecCCCCCCCceEEee-cccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeec
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD 500 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 500 (953)
+..+.+.+||. +.....+.. ....+..+.|+|+++ ++....++ .+.++|+.++ +......
T Consensus 162 --------~~d~~i~i~d~----~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg----~i~i~d~~~~--~~~~~~~ 222 (313)
T 3odt_A 162 --------SADKTIKLWQN----DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDG----LIKLVDMHTG--DVLRTYE 222 (313)
T ss_dssp --------ETTSCEEEEET----TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTS----EEEEEETTTC--CEEEEEE
T ss_pred --------ECCCCEEEEec----CceEEEEeccCcccEEEEEEcCCCe-EEEccCCC----eEEEEECCch--hhhhhhh
Confidence 34567888883 222333333 555677899999999 55554332 5777777764 3333333
Q ss_pred CCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeE
Q 002209 501 RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTV 580 (953)
Q Consensus 501 ~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~ 580 (953)
.....+.. +.|+|||+ ++.... ...+++||+.+++.......... .+.
T Consensus 223 ~~~~~i~~------~~~~~~~~-l~~~~~---------------------dg~v~iwd~~~~~~~~~~~~~~~----~i~ 270 (313)
T 3odt_A 223 GHESFVYC------IKLLPNGD-IVSCGE---------------------DRTVRIWSKENGSLKQVITLPAI----SIW 270 (313)
T ss_dssp CCSSCEEE------EEECTTSC-EEEEET---------------------TSEEEEECTTTCCEEEEEECSSS----CEE
T ss_pred cCCceEEE------EEEecCCC-EEEEec---------------------CCEEEEEECCCCceeEEEeccCc----eEE
Confidence 33333333 78999994 544432 12499999998887665544322 111
Q ss_pred eeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCe
Q 002209 581 ALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (953)
Q Consensus 581 ~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~ 621 (953)
...|+++++ ++. ... -..++++++.+++.
T Consensus 271 -------~~~~~~~~~-~~~-~~~---dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 271 -------SVDCMSNGD-IIV-GSS---DNLVRIFSQEKSRW 299 (313)
T ss_dssp -------EEEECTTSC-EEE-EET---TSCEEEEESCGGGC
T ss_pred -------EEEEccCCC-EEE-EeC---CCcEEEEeCCCCce
Confidence 246889988 333 322 24588888877654
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.5e-13 Score=142.58 Aligned_cols=192 Identities=13% Similarity=-0.025 Sum_probs=111.6
Q ss_pred cEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh--hhHHHHHHHHHHHHH
Q 002209 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAVE 748 (953)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~~~~ 748 (953)
|.||++||..... ..| ......|++ ||.|+. ++..|+|.+.... ......++|+.+.++
T Consensus 52 ~~lvllHG~~~~~-----------~~~----~~l~~~L~~-~~~v~~---~D~~G~G~S~~~~~~~~~~~~a~~~~~~l~ 112 (280)
T 3qmv_A 52 LRLVCFPYAGGTV-----------SAF----RGWQERLGD-EVAVVP---VQLPGRGLRLRERPYDTMEPLAEAVADALE 112 (280)
T ss_dssp EEEEEECCTTCCG-----------GGG----TTHHHHHCT-TEEEEE---CCCTTSGGGTTSCCCCSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCh-----------HHH----HHHHHhcCC-CceEEE---EeCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 8899999963111 112 123445555 999999 5557888764332 234566666666655
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCccc----EEEEcccCCCCCCCCcCccccc-----------------
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC----CGIARSGAYNRTLTPFGFQNED----------------- 807 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~----a~v~~~~~~d~~~~~~~~~~~~----------------- 807 (953)
.+. ..+++.|+||||||.+|+.++.++|+++. .+++.+................
T Consensus 113 ~~~-----~~~~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (280)
T 3qmv_A 113 EHR-----LTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDA 187 (280)
T ss_dssp HTT-----CSSSEEEEEETHHHHHHHHHHHHHHHTTCCCCSCEEEESCCCGGGCSCCCGGGSCHHHHHHHHHHHTCCC--
T ss_pred HhC-----CCCCEEEEEeCHhHHHHHHHHHHHHHcCCCCceEEEEECCCCCCCcCcccccccCHHHHHHHHHHhCCCChh
Confidence 431 23689999999999999999999887665 5555443211000000000000
Q ss_pred ------------chhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCc
Q 002209 808 ------------RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875 (953)
Q Consensus 808 ------------~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H 875 (953)
............+.+ ..+..+++|+|+++|++|..++ .....++.+.+. ..++++++++ ||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~g-gH 260 (280)
T 3qmv_A 188 DTLGAAYFDRRLPVLRADLRACERYDW-HPRPPLDCPTTAFSAAADPIAT--PEMVEAWRPYTT---GSFLRRHLPG-NH 260 (280)
T ss_dssp -------CCTTHHHHHHHHHHHHTCCC-CCCCCBCSCEEEEEEEECSSSC--HHHHHTTGGGBS---SCEEEEEEEE-ET
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHhccc-cCCCceecCeEEEEecCCCCcC--hHHHHHHHHhcC---CceEEEEecC-CC
Confidence 000000111111111 2246788999999999999998 777766655442 3367888886 99
Q ss_pred cCCC-cccHHHHHHHHHHH
Q 002209 876 GYAA-RESIMHVLWETDRW 893 (953)
Q Consensus 876 ~~~~-~~~~~~~~~~i~~f 893 (953)
.... .++...+.+.+.+|
T Consensus 261 ~~~~~~~~~~~~~~~i~~~ 279 (280)
T 3qmv_A 261 FFLNGGPSRDRLLAHLGTE 279 (280)
T ss_dssp TGGGSSHHHHHHHHHHHTT
T ss_pred eEEcCchhHHHHHHHHHhh
Confidence 7643 24444555555544
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=8e-11 Score=129.93 Aligned_cols=265 Identities=11% Similarity=0.051 Sum_probs=161.5
Q ss_pred CCCCceecCC---CCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCce-eeeecC
Q 002209 110 PLPALSFSPQ---RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE-IEIQGF 185 (953)
Q Consensus 110 ~~~~~~~SPD---G~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~-~~l~~~ 185 (953)
.+..++|||| |++|+....+ +.|.||++...+ ... ..+..+
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~d---------------------------------g~i~iw~~~~~~--~~~~~~~~~h 85 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWA---------------------------------NDVRCWEVQDSG--QTIPKAQQMH 85 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETT---------------------------------SEEEEEEECTTS--CEEEEEEEEC
T ss_pred ceEEEEEcCCCCCceEEEEECCC---------------------------------CcEEEEEcCCCC--ceeEEEeccc
Confidence 5778999999 6888888765 367999995423 222 334332
Q ss_pred CCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEE--ecCCeEEEEEec
Q 002209 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW--VNNSTLLVCTIP 263 (953)
Q Consensus 186 ~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w--spDg~~l~~~~~ 263 (953)
...+....|+|||+.|+... ....|.++|+++++...+..+... +..+.| +||++.|+...
T Consensus 86 --~~~v~~~~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~l~~~~- 148 (368)
T 3mmy_A 86 --TGPVLDVCWSDDGSKVFTAS---------CDKTAKMWDLSSNQAIQIAQHDAP-----VKTIHWIKAPNYSCVMTGS- 148 (368)
T ss_dssp --SSCEEEEEECTTSSEEEEEE---------TTSEEEEEETTTTEEEEEEECSSC-----EEEEEEEECSSCEEEEEEE-
T ss_pred --cCCEEEEEECcCCCEEEEEc---------CCCcEEEEEcCCCCceeeccccCc-----eEEEEEEeCCCCCEEEEcc-
Confidence 24689999999999999755 256889999999887776554432 778999 89999888661
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCCCcccccccCC
Q 002209 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPPAVYTSLDPSP 341 (953)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~~~~~~~~~Sp 341 (953)
..+.|.++|+ +++. ..+........+.++
T Consensus 149 ------------------------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~- 179 (368)
T 3mmy_A 149 ------------------------------------------------WDKTLKFWDTRSSNPMMVLQLPERCYCADVI- 179 (368)
T ss_dssp ------------------------------------------------TTSEEEEECSSCSSCSEEEECSSCEEEEEEE-
T ss_pred ------------------------------------------------CCCcEEEEECCCCcEEEEEecCCCceEEEec-
Confidence 2246777887 6643 333322333344444
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE--EeccCCCcccCCccccccccCccceeeccCCCC----ceE
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR--ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS----TLY 415 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~--~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~----i~~ 415 (953)
+..++....+. .+.+|++...... .+.... . .....+.+.+++.. ++.
T Consensus 180 -~~~~~~~~~~~-------------~i~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~ 233 (368)
T 3mmy_A 180 -YPMAVVATAER-------------GLIVYQLENQPSEFRRIESPL-K-----------HQHRCVAIFKDKQNKPTGFAL 233 (368)
T ss_dssp -TTEEEEEEGGG-------------CEEEEECSSSCEEEEECCCSC-S-----------SCEEEEEEEECTTSCEEEEEE
T ss_pred -CCeeEEEeCCC-------------cEEEEEeccccchhhhccccc-c-----------CCCceEEEcccCCCCCCeEEE
Confidence 34555555333 7889999754322 221110 0 11123444444433 333
Q ss_pred EEEeccCCCcccccccCCeEEEEecCCCCCCC----ceEEeeccc------------ccCCeeeccCCceEEEEEecccC
Q 002209 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG----PEILHKLDL------------RYGGISWCDDSLALVYESWYKTR 479 (953)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~----~~~l~~~~~------------~~~~~~~SpDg~~l~~~~~~~~~ 479 (953)
. +..+.+.+|++ .... ...+..+.. .+..++|+|||+.|+....++
T Consensus 234 ~-------------~~dg~i~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-- 295 (368)
T 3mmy_A 234 G-------------SIEGRVAIHYI---NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG-- 295 (368)
T ss_dssp E-------------ETTSEEEEEES---SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS--
T ss_pred e-------------cCCCcEEEEec---CCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC--
Confidence 2 34557788886 3221 122332222 477899999999988876544
Q ss_pred ceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 480 RTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 480 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
.|.++|+.++ +...........+.. +.|+|||++|+....
T Consensus 296 --~i~iwd~~~~--~~~~~~~~~~~~v~~------~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 296 --RFSFWDKDAR--TKLKTSEQLDQPISA------CCFNHNGNIFAYASS 335 (368)
T ss_dssp --CEEEEETTTT--EEEEECCCCSSCEEE------EEECTTSSCEEEEEC
T ss_pred --eEEEEECCCC--cEEEEecCCCCCceE------EEECCCCCeEEEEec
Confidence 4566666664 333333333333333 889999999998874
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-12 Score=137.57 Aligned_cols=209 Identities=11% Similarity=-0.011 Sum_probs=123.5
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|..++....- .++.|.||++||.+.... .|. .....|+ ..|.|++ .|.+|+
T Consensus 28 ~~g~~l~y~~~G--------~g~~~~vvllHG~~~~~~-----------~w~----~~~~~L~-~~~~via---~Dl~Gh 80 (318)
T 2psd_A 28 VLDSFINYYDSE--------KHAENAVIFLHGNATSSY-----------LWR----HVVPHIE-PVARCII---PDLIGM 80 (318)
T ss_dssp ETTEEEEEEECC--------SCTTSEEEEECCTTCCGG-----------GGT----TTGGGTT-TTSEEEE---ECCTTS
T ss_pred eCCeEEEEEEcC--------CCCCCeEEEECCCCCcHH-----------HHH----HHHHHhh-hcCeEEE---EeCCCC
Confidence 477777655431 122468999999642211 121 1122333 4579999 555788
Q ss_pred CChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC----C
Q 002209 727 GDEEAND---RFVEQLVACAEAAVEEVVRRGVAHP-SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT----L 798 (953)
Q Consensus 727 G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~-~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~----~ 798 (953)
|.+.... .......+|+.++++.+ +. +++.|+||||||.+++.+|.++|++++++|+++++.... .
T Consensus 81 G~S~~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~ 154 (318)
T 2psd_A 81 GKSGKSGNGSYRLLDHYKYLTAWFELL------NLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDE 154 (318)
T ss_dssp TTCCCCTTSCCSHHHHHHHHHHHHTTS------CCCSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEECCSCBSCCTT
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHhc------CCCCCeEEEEEChhHHHHHHHHHhChHhhheEEEeccccCCccchhh
Confidence 8875431 12455555655554432 23 689999999999999999999999999999976432110 0
Q ss_pred CCcC------cccc--------c-------------ch-hhhhHHHHH-----------------hcCcc----------
Q 002209 799 TPFG------FQNE--------D-------------RT-LWEATSTYV-----------------EMSPF---------- 823 (953)
Q Consensus 799 ~~~~------~~~~--------~-------------~~-~~~~~~~~~-----------------~~sp~---------- 823 (953)
.+.. +... . .. ..+..+.+. ...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (318)
T 2psd_A 155 WPDIEEDIALIKSEEGEKMVLENNFFVETVLPSKIMRKLEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQ 234 (318)
T ss_dssp SCSCHHHHHHHHSTHHHHHHTTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHTCCBTTTSCHHHHH
T ss_pred hhhHHHHHHHHhcccchhhhhcchHHHHhhccccccccCCHHHHHHHHHhhcCccccccchhcccccccccccccchhHH
Confidence 0000 0000 0 00 000000000 00000
Q ss_pred ------cccCCC-CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 824 ------MSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 824 ------~~~~~i-~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
..+.++ ++|+|+++|++| .++ + .+.++.+.+. ..+++++ ++||.. ..+..+.+.+.+.+||.+
T Consensus 235 ~~~~~~~~l~~i~~~P~Lvi~G~~D-~~~--~-~~~~~~~~~~----~~~~~~i-~~gH~~-~~e~p~~~~~~i~~fl~~ 304 (318)
T 2psd_A 235 IVRNYNAYLRASDDLPKLFIESDPG-FFS--N-AIVEGAKKFP----NTEFVKV-KGLHFL-QEDAPDEMGKYIKSFVER 304 (318)
T ss_dssp HHHHHHHHHHTCTTSCEEEEEEEEC-SSH--H-HHHHHHTTSS----SEEEEEE-EESSSG-GGTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCeEEEEeccc-cCc--H-HHHHHHHhCC----CcEEEEe-cCCCCC-HhhCHHHHHHHHHHHHHH
Confidence 123457 999999999999 876 5 5555544432 3577778 679976 466788899999999987
Q ss_pred hc
Q 002209 897 YC 898 (953)
Q Consensus 897 ~l 898 (953)
..
T Consensus 305 ~~ 306 (318)
T 2psd_A 305 VL 306 (318)
T ss_dssp HH
T ss_pred hh
Confidence 64
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.35 E-value=4.1e-13 Score=153.26 Aligned_cols=210 Identities=19% Similarity=0.115 Sum_probs=133.9
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcC-cEEEEcCCC-CCCCCCCh
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG-FAILGGPTT-PIIGEGDE 729 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G-~~V~~~~~~-~~~G~G~~ 729 (953)
+...+|.|... . +++|+||++|||++..+... ... .....|+++| ++|+.++|+ +..|++..
T Consensus 83 L~l~v~~P~~~--~--~~~PviV~iHGGg~~~g~~~--------~~~----~~~~~la~~g~~vvv~~nYRlg~~Gf~~~ 146 (489)
T 1qe3_A 83 LYVNVFAPDTP--S--QNLPVMVWIHGGAFYLGAGS--------EPL----YDGSKLAAQGEVIVVTLNYRLGPFGFLHL 146 (489)
T ss_dssp CEEEEEEECSS--C--CSEEEEEEECCSTTTSCCTT--------SGG----GCCHHHHHHHTCEEEEECCCCHHHHSCCC
T ss_pred CEEEEEeCCCC--C--CCCCEEEEECCCccccCCCC--------Ccc----cCHHHHHhcCCEEEEecCccCcccccCcc
Confidence 56678888751 1 23899999999875433211 110 1134567665 999998887 33344332
Q ss_pred hh--hhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccCCCCCCCC--
Q 002209 730 EA--NDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYNRTLTP-- 800 (953)
Q Consensus 730 ~~--~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~d~~~~~-- 800 (953)
.. ........+.|+.++++|+.++ ..+|+++|.|+|+|+||++++.++... +.+|+++|+.+|..++....
T Consensus 147 ~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~ 226 (489)
T 1qe3_A 147 SSFDEAYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQA 226 (489)
T ss_dssp TTTCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHHH
T ss_pred ccccccCCCCcchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHHHH
Confidence 11 1112234578999999999875 236999999999999999999887753 46899999999976321100
Q ss_pred ----------cCccccc-chhhh--hHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEE
Q 002209 801 ----------FGFQNED-RTLWE--ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRL 867 (953)
Q Consensus 801 ----------~~~~~~~-~~~~~--~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~ 867 (953)
.++.... ..+.. ..+.+...+++........|.+++++..|..+. +++..+++++.+..++++.+
T Consensus 227 ~~~~~~~~~~~g~~~~~~~~Lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~D~~~~--~~~~~~~~~~~~~~~vp~~~ 304 (489)
T 1qe3_A 227 ASTAAAFLQVLGINESQLDRLHTVAAEDLLKAADQLRIAEKENIFQLFFQPALDPKTL--PEEPEKSIAEGAASGIPLLI 304 (489)
T ss_dssp HHHHHHHHHHHTCCTTCGGGGGTSCHHHHHHHHHHHHTSTTCCTTSCSSCCBCBTTTB--CSCHHHHHHTTTTTTCCEEE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHcCCHHHHHHHHHHhhhccccccCCccceEeECCeec--CcCHHHHHhcCCCCCCCEEE
Confidence 0000000 00000 011111112221111234567889999999987 88899999888888999999
Q ss_pred EEeCCCCccCCC
Q 002209 868 VILPFESHGYAA 879 (953)
Q Consensus 868 ~~~~~~~H~~~~ 879 (953)
-..++++|.+..
T Consensus 305 g~~~~Eg~~~~~ 316 (489)
T 1qe3_A 305 GTTRDEGYLFFT 316 (489)
T ss_dssp EEETTGGGGTCC
T ss_pred eeecchhHhhcc
Confidence 999999998753
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.6e-10 Score=127.99 Aligned_cols=256 Identities=12% Similarity=0.091 Sum_probs=152.8
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+.|.+||+.+ + .....+.+ +...+....|+||+ .|+... .+..|.++|+++++...........
T Consensus 142 g~i~vwd~~~-~--~~~~~~~~--h~~~V~~l~~~~~~-~l~s~s---------~dg~i~vwd~~~~~~~~~~~~h~~~- 205 (464)
T 3v7d_B 142 KMIRVYDSIN-K--KFLLQLSG--HDGGVWALKYAHGG-ILVSGS---------TDRTVRVWDIKKGCCTHVFEGHNST- 205 (464)
T ss_dssp SCEEEEETTT-T--EEEEEECC--CSSCEEEEEECSTT-EEEEEE---------TTSCEEEEETTTTEEEEEECCCSSC-
T ss_pred CcEEEEECCC-C--cEEEEEeC--CCcCEEEEEEcCCC-EEEEEe---------CCCCEEEEECCCCcEEEEECCCCCc-
Confidence 4689999853 2 12233333 23478999999998 555533 3567888899888765544333222
Q ss_pred cccccceEEe--cCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEE
Q 002209 243 NAIFDNFVWV--NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (953)
Q Consensus 243 ~~~~~~~~ws--pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 320 (953)
+..+.|+ ++++.|+....+. .|.+++
T Consensus 206 ---v~~l~~~~~~~~~~l~s~s~d~-------------------------------------------------~i~vwd 233 (464)
T 3v7d_B 206 ---VRCLDIVEYKNIKYIVTGSRDN-------------------------------------------------TLHVWK 233 (464)
T ss_dssp ---EEEEEEEESSSCEEEEEEETTS-------------------------------------------------CEEEEE
T ss_pred ---cEEEEEecCCCCCEEEEEcCCC-------------------------------------------------cEEEee
Confidence 6677787 6778888663221 122222
Q ss_pred c-CCc------------------------eeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc
Q 002209 321 L-DGT------------------------VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (953)
Q Consensus 321 ~-~g~------------------------~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 374 (953)
+ ++. ...+... ..+ .+++++|+.|+..+.+. .|.+||+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~d~-------------~i~vwd~~ 298 (464)
T 3v7d_B 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDN-------------TLIVWDVA 298 (464)
T ss_dssp CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE--EEEEEETTEEEEEETTS-------------CEEEEETT
T ss_pred CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE--EEEcCCCCEEEEEeCCC-------------eEEEEECC
Confidence 2 111 1111111 222 34588999998887443 89999998
Q ss_pred CceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee
Q 002209 375 GIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK 453 (953)
Q Consensus 375 g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~ 453 (953)
.+... .+..+ ...+..+.|+|||+.++.. +..+.|.+||+ .++.....+..
T Consensus 299 ~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~sg-------------~~dg~i~vwd~--~~~~~~~~~~~ 350 (464)
T 3v7d_B 299 QMKCLYILSGH-------------TDRIYSTIYDHERKRCISA-------------SMDTTIRIWDL--ENGELMYTLQG 350 (464)
T ss_dssp TTEEEEEECCC-------------SSCEEEEEEETTTTEEEEE-------------ETTSCEEEEET--TTTEEEEEECC
T ss_pred CCcEEEEecCC-------------CCCEEEEEEcCCCCEEEEE-------------eCCCcEEEEEC--CCCcEEEEEeC
Confidence 65433 33322 1345679999999976655 44567999996 23322334445
Q ss_pred cccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccC
Q 002209 454 LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKEND 533 (953)
Q Consensus 454 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~ 533 (953)
+...+..+.|+ ++.|+..+.++ .+.++|+.++ ......... .. ...+.|+++|+.|+... +
T Consensus 351 h~~~v~~~~~~--~~~l~s~s~dg----~v~vwd~~~~--~~~~~~~~~-~~------~~~~~~~~~~~~l~~~~-d--- 411 (464)
T 3v7d_B 351 HTALVGLLRLS--DKFLVSAAADG----SIRGWDANDY--SRKFSYHHT-NL------SAITTFYVSDNILVSGS-E--- 411 (464)
T ss_dssp CSSCEEEEEEC--SSEEEEEETTS----EEEEEETTTC--CEEEEEECT-TC------CCEEEEEECSSEEEEEE-T---
T ss_pred CCCcEEEEEEc--CCEEEEEeCCC----cEEEEECCCC--ceeeeecCC-CC------ccEEEEEeCCCEEEEec-C---
Confidence 55666677786 56777665443 4666676664 222222111 11 11167999999887765 1
Q ss_pred CCcEEEEecCCCCCCCCCCeEEEEECCCCceEE
Q 002209 534 EGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566 (953)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~ 566 (953)
..+++||+.+++...
T Consensus 412 ------------------g~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 412 ------------------NQFNIYNLRSGKLVH 426 (464)
T ss_dssp ------------------TEEEEEETTTCCEEE
T ss_pred ------------------CeEEEEECCCCcEEe
Confidence 149999999988765
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.34 E-value=7.5e-11 Score=130.12 Aligned_cols=287 Identities=12% Similarity=0.086 Sum_probs=165.3
Q ss_pred CcccceEeccC---CCeEEEEEeeccccCCCCcceEEEEECCCCcee-ecccCCCccccccccceEEecC----CeEEEE
Q 002209 189 AKLNFVTWSQD---GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PLFQSPDIYLNAIFDNFVWVNN----STLLVC 260 (953)
Q Consensus 189 ~~~~~~~wSPD---G~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~~~~wspD----g~~l~~ 260 (953)
..+...+|+|+ ++.++++... ...|.++++.+++.. .+...........+..++|+|+ |+.|+.
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~--------~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVG--------SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEE--------TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEecccCCCCceEEEECC--------CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 46888999985 6655555431 237888888765543 3322111111122678999999 677776
Q ss_pred EecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-Cccccc
Q 002209 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSL 337 (953)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~ 337 (953)
.. ..+.|.++++ +++. ..+... ..+..+
T Consensus 91 ~~-------------------------------------------------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~ 121 (366)
T 3k26_A 91 AG-------------------------------------------------SRGIIRIINPITMQCIKHYVGHGNAINEL 121 (366)
T ss_dssp EE-------------------------------------------------TTCEEEEECTTTCCEEEEEESCCSCEEEE
T ss_pred ec-------------------------------------------------CCCEEEEEEchhceEeeeecCCCCcEEEE
Confidence 51 2246778888 6653 334433 778899
Q ss_pred ccCC-CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEE-eccCCCcccCCccccccccCccceeeccCCCCceE
Q 002209 338 DPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (953)
Q Consensus 338 ~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~-l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~ 415 (953)
+|+| |++.|+..+.+ +.|.+||+..++... +.... .....+..++|+|||+.++.
T Consensus 122 ~~~~~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~ 178 (366)
T 3k26_A 122 KFHPRDPNLLLSVSKD-------------HALRLWNIQTDTLVAIFGGVE----------GHRDEVLSADYDLLGEKIMS 178 (366)
T ss_dssp EECSSCTTEEEEEETT-------------SCEEEEETTTTEEEEEECSTT----------SCSSCEEEEEECTTSSEEEE
T ss_pred EECCCCCCEEEEEeCC-------------CeEEEEEeecCeEEEEecccc----------cccCceeEEEECCCCCEEEE
Confidence 9999 89988887744 389999998655433 32111 11234578999999987665
Q ss_pred EEEeccCCCcccccccCCeEEEEecCCCCCCCce-EE----------------------------eecccccCCeeeccC
Q 002209 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-IL----------------------------HKLDLRYGGISWCDD 466 (953)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~-~l----------------------------~~~~~~~~~~~~SpD 466 (953)
. +..+.+.+|++ ..++.. .+ ..+...+..+.|+
T Consensus 179 ~-------------~~dg~i~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 240 (366)
T 3k26_A 179 C-------------GMDHSLKLWRI---NSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-- 240 (366)
T ss_dssp E-------------ETTSCEEEEES---CSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred e-------------cCCCCEEEEEC---CCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence 5 34557888886 222111 01 1144556678888
Q ss_pred CceEEEEEecccCceEEEEEcCCCCCC------------CcEEeecCCCccccCCCCCCCeEeccC--CCEEEEEeeecc
Q 002209 467 SLALVYESWYKTRRTRTWVISPGSKDV------------APRILFDRSSEDVYSDPGSPMMRRTST--GTYVIAKIKKEN 532 (953)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~d~~~~~~------------~~~~~~~~~~~~~~~~~~~p~~~~SpD--G~~l~~~~~~~~ 532 (953)
++.|+....++ .|.++++.++.. ............+.. +.|+|| |++|+....+
T Consensus 241 ~~~l~~~~~d~----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~s~~~~~~~l~~~~~d-- 308 (366)
T 3k26_A 241 GDLILSKSCEN----AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWY------MRFSMDFWQKMLALGNQV-- 308 (366)
T ss_dssp TTEEEEECSSS----EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSC------CCCEECTTSSEEEEECTT--
T ss_pred CCEEEEEecCC----EEEEEeCCCccccccccccCCcchheeccccccCCcEEE------EEEcCCCCCcEEEEEecC--
Confidence 66776665433 344444443211 011112222222222 678999 9988877532
Q ss_pred CCCcEEEEecCCCCCCCCCCeEEEEECCCCceEE----EeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCC
Q 002209 533 DEGTYILLNGNGATPEGNIPFLDLFDINTGSKER----IWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTEN 608 (953)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p 608 (953)
..|++||+.+++... ....... -..+. ...|++|++.++.....
T Consensus 309 -------------------g~i~vwd~~~~~~~~~~~~~~~~~~~--~~~v~-------~~~~s~~~~~l~s~~~d---- 356 (366)
T 3k26_A 309 -------------------GKLYVWDLEVEDPHKAKCTTLTHHKC--GAAIR-------QTSFSRDSSILIAVCDD---- 356 (366)
T ss_dssp -------------------SCEEEEECCSSSGGGCEEEEECCTTC--CSCEE-------EEEECTTSSEEEEEETT----
T ss_pred -------------------CcEEEEECCCCCCccccceEEccccc--CCceE-------EEEeCCCCCeEEEEeCC----
Confidence 249999998875321 1111100 00111 24689999877754432
Q ss_pred ceEEEEECC
Q 002209 609 TQYYIQSWP 617 (953)
Q Consensus 609 ~~l~~~~~~ 617 (953)
..+++|++.
T Consensus 357 g~i~iwd~~ 365 (366)
T 3k26_A 357 ASIWRWDRL 365 (366)
T ss_dssp SEEEEEEC-
T ss_pred CEEEEEEec
Confidence 357887753
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.34 E-value=9.2e-12 Score=131.07 Aligned_cols=194 Identities=13% Similarity=0.109 Sum_probs=112.0
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhh-hHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR-FVEQLVACAEAAVE 748 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~-~~~~~~~D~~~~~~ 748 (953)
.|.||++||..... ..| ......|++.||.|++ .|.+|+|.+..... .+...++|+.+.++
T Consensus 16 ~~~vvllHG~~~~~-----------~~w----~~~~~~L~~~~~~vi~---~Dl~GhG~S~~~~~~~~~~~a~~l~~~l~ 77 (264)
T 1r3d_A 16 TPLVVLVHGLLGSG-----------ADW----QPVLSHLARTQCAALT---LDLPGHGTNPERHCDNFAEAVEMIEQTVQ 77 (264)
T ss_dssp BCEEEEECCTTCCG-----------GGG----HHHHHHHTTSSCEEEE---ECCTTCSSCC-------CHHHHHHHHHHH
T ss_pred CCcEEEEcCCCCCH-----------HHH----HHHHHHhcccCceEEE---ecCCCCCCCCCCCccCHHHHHHHHHHHHH
Confidence 47899999953211 111 1234455558999999 55578888754221 12333444433332
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHH---HHHhCCCcccEEEEcccCCCCCCCC-----------cC-------ccc--
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTAN---LLAHAPHLFCCGIARSGAYNRTLTP-----------FG-------FQN-- 805 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~---~a~~~p~~~~a~v~~~~~~d~~~~~-----------~~-------~~~-- 805 (953)
. . .++..++.|+||||||.+++. ++.++|++++++|+.++........ +. ...
T Consensus 78 ~---l-~~~~~p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (264)
T 1r3d_A 78 A---H-VTSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVL 153 (264)
T ss_dssp T---T-CCTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred H---h-CcCCCceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCCCCCCChhhhhhhhcccHHHHHHhccccHHHHH
Confidence 2 2 232224999999999999999 7788999999999887643211000 00 000
Q ss_pred ---ccchhhh-----h------------H----HHHHhc------CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHH
Q 002209 806 ---EDRTLWE-----A------------T----STYVEM------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (953)
Q Consensus 806 ---~~~~~~~-----~------------~----~~~~~~------sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~ 855 (953)
.....+. . . ..+... .....+.++++|+|+++|++|..++ .+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-------~~~ 226 (264)
T 1r3d_A 154 SDWYQQAVFSSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKFQ-------QLA 226 (264)
T ss_dssp HHHTTSGGGTTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHHH-------HHH
T ss_pred HHHhhhhhhhccCHHHHHHHHHHHhhcchHHHHHHHHhhhhccCccHHHHHHhcCCCEEEEEECCCchHH-------HHH
Confidence 0000000 0 0 001100 1112345788999999999996431 222
Q ss_pred HHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 856 NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 856 ~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
+.+. .++++++++||... .+..+.+.+.+.+|+.++.
T Consensus 227 ~~~~-----~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~~ 263 (264)
T 1r3d_A 227 ESSG-----LSYSQVAQAGHNVH-HEQPQAFAKIVQAMIHSII 263 (264)
T ss_dssp HHHC-----SEEEEETTCCSCHH-HHCHHHHHHHHHHHHHHHC
T ss_pred HHhC-----CcEEEcCCCCCchh-hcCHHHHHHHHHHHHHHhc
Confidence 3321 46889999999863 5667888999999998763
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-10 Score=124.61 Aligned_cols=227 Identities=11% Similarity=0.112 Sum_probs=136.7
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc--e-eecccCCCccccccccceEEecC--CeEEEEEec
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--A-RPLFQSPDIYLNAIFDNFVWVNN--STLLVCTIP 263 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~--~-~~lt~~~~~~~~~~~~~~~wspD--g~~l~~~~~ 263 (953)
..+...+|||||++||.... +..|.+++++++. . ..+..+.. .+..++|+++ |+.|+...
T Consensus 10 ~~V~~~~~s~~g~~las~s~---------D~~v~iw~~~~~~~~~~~~l~gH~~-----~V~~v~~s~~~~g~~l~s~s- 74 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSS---------DKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCS- 74 (297)
T ss_dssp SCEEEEEECTTSSEEEEEET---------TSCEEEEEBCSSCBCCCEEECCCSS-----CEEEEEECCGGGCSEEEEEE-
T ss_pred CceEEEEECCCCCEEEEEeC---------CCEEEEEecCCCCcEEEEEEccccC-----CeEEEEecCCCcCCEEEEEc-
Confidence 36888999999999988652 4566777776432 2 23333222 2778999864 88887651
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc---eeEeCCC-Ccccccc
Q 002209 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLD 338 (953)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~---~~~l~~~-~~~~~~~ 338 (953)
..+.|.++|+ +|+ ...+... ..+..++
T Consensus 75 ------------------------------------------------~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~ 106 (297)
T 2pm7_B 75 ------------------------------------------------YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQ 106 (297)
T ss_dssp ------------------------------------------------TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEE
T ss_pred ------------------------------------------------CCCEEEEEEcCCCceEEEEEeecCCCceeEEE
Confidence 1245666777 653 2233333 6788999
Q ss_pred cCCC--CcEEEEEEecCCccccccCCCCCcceEEEeccCce-E--EEeccCCCcccCCccccccccCccceeeccCC---
Q 002209 339 PSPD--EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-V--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDK--- 410 (953)
Q Consensus 339 ~SpD--G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~--~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg--- 410 (953)
|+|| |+.|+..+.+. .|.+||+..+. . ..+. +....+..++|+|++
T Consensus 107 ~~p~~~g~~l~s~s~d~-------------~v~~wd~~~~~~~~~~~~~-------------~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 107 WAPHEYGPMLLVASSDG-------------KVSVVEFKENGTTSPIIID-------------AHAIGVNSASWAPATIEE 160 (297)
T ss_dssp ECCGGGCSEEEEEETTS-------------EEEEEEBCSSSCBCCEEEE-------------CCSSCEEEEEECCCC---
T ss_pred eCcCCCCcEEEEEECCC-------------cEEEEEecCCCceeeeeee-------------cccCccceEeecCCcccc
Confidence 9998 88888777443 89999997532 1 1111 122345678999984
Q ss_pred ----------CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC-c----eEEeecccccCCeeeccCC---ceEEE
Q 002209 411 ----------PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-P----EILHKLDLRYGGISWCDDS---LALVY 472 (953)
Q Consensus 411 ----------~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~-~----~~l~~~~~~~~~~~~SpDg---~~l~~ 472 (953)
+.|+.. +..+.|.+||+ ..++ . ..+..+...+..++|+|++ +.|+.
T Consensus 161 ~~~~~~~~~~~~l~sg-------------s~D~~v~lwd~---~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTG-------------GADNLVKIWKY---NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp ---------CCEEEEE-------------ETTSCEEEEEE---ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred cccCCCCCCcceEEEE-------------cCCCcEEEEEE---cCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence 333322 34557888886 3222 1 2344556667889999996 66666
Q ss_pred EEecccCceEEEEEcCCCCCCCcEEee-cCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 473 ESWYKTRRTRTWVISPGSKDVAPRILF-DRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 473 ~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.+.++. .+||.++...+......+. ......++. ++|+|||++|+...
T Consensus 225 ~s~D~~--v~iWd~~~~~~~~~~~~~~~~~~~~~v~~------~~~s~~g~~las~~ 273 (297)
T 2pm7_B 225 VSQDRT--CIIWTQDNEQGPWKKTLLKEEKFPDVLWR------ASWSLSGNVLALSG 273 (297)
T ss_dssp EETTSC--EEEEEESSTTSCCEEEESSSSCCSSCEEE------EEECSSSCCEEEEE
T ss_pred EECCCc--EEEEEeCCCCCccceeeeecccCCCcEEE------EEECCCCCEEEEEc
Confidence 655443 4777665432210111221 111222222 78999999998776
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-11 Score=129.94 Aligned_cols=103 Identities=12% Similarity=0.116 Sum_probs=67.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCC-CC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DG 188 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~-~~ 188 (953)
.+..++|||||++||....+ +.|.+|++.... ...+.+..+. ..
T Consensus 13 ~v~~~~~~~~~~~l~~~~~d---------------------------------g~i~iw~~~~~~--~~~~~~~~~~~~~ 57 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSD---------------------------------QHIKVFKLDKDT--SNWELSDSWRAHD 57 (351)
T ss_dssp CEEEEEECSSSSEEEEEETT---------------------------------SEEEEEEECSSS--CCEEEEEEEECCS
T ss_pred ceeEEEEcCCCCEEEEeeCC---------------------------------CeEEEEECCCCC--CcceecceeccCC
Confidence 46788999999999988775 367999985422 1112221121 23
Q ss_pred CcccceEecc--CCCeEEEEEeeccccCCCCcceEEEEECCCCc----------eeecccCCCccccccccceEEecC--
Q 002209 189 AKLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK----------ARPLFQSPDIYLNAIFDNFVWVNN-- 254 (953)
Q Consensus 189 ~~~~~~~wSP--DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~----------~~~lt~~~~~~~~~~~~~~~wspD-- 254 (953)
..+....|+| ||+.|+.... ...|.++|+++++ ...+..+.. .+..++|+|+
T Consensus 58 ~~v~~~~~~~~~d~~~l~s~~~---------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~ 123 (351)
T 3f3f_A 58 SSIVAIDWASPEYGRIIASASY---------DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG-----SLYSVKFAPAHL 123 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEET---------TSCEEEEEECTTSCTTSSCSEEEEEEECCCSS-----CEEEEEECCGGG
T ss_pred CcEEEEEEcCCCCCCEEEEEcC---------CCeEEEEecCCCcccccccCcceeeeecccCC-----ceeEEEEcCCCC
Confidence 4789999999 6998887552 4567777777653 122222222 2778999999
Q ss_pred CeEEEEE
Q 002209 255 STLLVCT 261 (953)
Q Consensus 255 g~~l~~~ 261 (953)
++.|+..
T Consensus 124 ~~~l~~~ 130 (351)
T 3f3f_A 124 GLKLACL 130 (351)
T ss_dssp CSEEEEE
T ss_pred CcEEEEe
Confidence 9888876
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-13 Score=148.46 Aligned_cols=197 Identities=11% Similarity=0.012 Sum_probs=117.8
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh-------hhHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-------RFVEQLVAC 742 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-------~~~~~~~~D 742 (953)
.|+||++||..... ..|. .....|+ +||.|+. ++.+|+|.+.... ......++|
T Consensus 25 ~p~vv~lHG~~~~~-----------~~~~----~~~~~l~-~g~~v~~---~D~~G~G~s~~~~~~~~~~~~~~~~~~~~ 85 (304)
T 3b12_A 25 GPALLLLHGFPQNL-----------HMWA----RVAPLLA-NEYTVVC---ADLRGYGGSSKPVGAPDHANYSFRAMASD 85 (304)
Confidence 57899999963211 1121 2233455 8999999 5556788775431 123344556
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC---------------------c
Q 002209 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP---------------------F 801 (953)
Q Consensus 743 ~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~---------------------~ 801 (953)
+.++++.+ +.+++.|+||||||.+++.++.++|++++++|++++........ .
T Consensus 86 l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (304)
T 3b12_A 86 QRELMRTL------GFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPTYVMFEEVDRFVARAYWHWYFLQQPAPY 159 (304)
Confidence 66655554 33589999999999999999999999999999998754311000 0
Q ss_pred ----------Ccccc-c---------chhhhhHHHH-----------------Hhc---C----cccccCCCCCcEEEEE
Q 002209 802 ----------GFQNE-D---------RTLWEATSTY-----------------VEM---S----PFMSANKLKKPILLVH 837 (953)
Q Consensus 802 ----------~~~~~-~---------~~~~~~~~~~-----------------~~~---s----p~~~~~~i~~P~Li~~ 837 (953)
.+... . ....+..+.+ ... . ....+.++++|+|+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~ 239 (304)
T 3b12_A 160 PEKVIGADPDTFYEGCLFGWGATGADGFDPEQLEEYRKQWRDPAAIHGSCCDYRAGGTIDFELDHGDLGRQVQCPALVFS 239 (304)
Confidence 00000 0 0000000000 000 0 0011567899999999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
|++|..++ +......+.+.+. .++++++ ++||... .++.+.+.+.+.+||++..
T Consensus 240 G~~D~~~~-~~~~~~~~~~~~~----~~~~~~i-~~gH~~~-~e~p~~~~~~i~~fl~~~~ 293 (304)
T 3b12_A 240 GSAGLMHS-LFEMQVVWAPRLA----NMRFASL-PGGHFFV-DRFPDDTARILREFLSDAR 293 (304)
Confidence 99996553 0333333333332 2567778 9999864 5666788888999998764
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-10 Score=127.89 Aligned_cols=229 Identities=13% Similarity=0.101 Sum_probs=139.7
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC--CceeecccCCCccccccccceEEecC--CeEEEEEecC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT--GKARPLFQSPDIYLNAIFDNFVWVNN--STLLVCTIPL 264 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~~~~wspD--g~~l~~~~~~ 264 (953)
..+...+|+|||++|+... . ...|.++++++ ++.......... .+..++|+++ ++.|+...
T Consensus 12 ~~v~~~~~s~~~~~l~~~~-------~--dg~i~iw~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~l~s~~-- 76 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCS-------S--DKTIKIFEVEGETHKLIDTLTGHEG----PVWRVDWAHPKFGTILASCS-- 76 (379)
T ss_dssp CCEEEEEECSSSSEEEEEE-------T--TSCEEEEEEETTEEEEEEEECCCSS----CEEEEEECCGGGCSEEEEEE--
T ss_pred ccEEEEEEcCCCCEEEEEE-------C--CCcEEEEecCCCcceeeeEecCCCC----cEEEEEeCCCCCCCEEEEec--
Confidence 4688999999999998854 2 34555556553 333222222222 2778999977 88888661
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc---eeEeCCC-Cccccccc
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLDP 339 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~---~~~l~~~-~~~~~~~~ 339 (953)
..+.|.++++ +++ ...+... ..+..++|
T Consensus 77 -----------------------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 109 (379)
T 3jrp_A 77 -----------------------------------------------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 109 (379)
T ss_dssp -----------------------------------------------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred -----------------------------------------------cCCEEEEEEcCCCceeEeeeecCCCcceEEEEe
Confidence 2245667777 663 3334434 77889999
Q ss_pred CCC--CcEEEEEEecCCccccccCCCCCcceEEEeccCceE---EEeccCCCcccCCccccccccCccceeecc------
Q 002209 340 SPD--EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV---RELCDLPLAEDIPIAFNSVRKGMRSINWRS------ 408 (953)
Q Consensus 340 SpD--G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~---~~l~~~~~~~~~p~~~~~~~~~~~~~~wsp------ 408 (953)
+|+ |+.|+....+. .|.+||+..... ..+..+ ...+..+.|+|
T Consensus 110 ~~~~~~~~l~~~~~d~-------------~i~v~d~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 110 APHEYGPLLLVASSDG-------------KVSVVEFKENGTTSPIIIDAH-------------AIGVNSASWAPATIEED 163 (379)
T ss_dssp CCGGGCSEEEEEETTS-------------EEEEEECCTTSCCCEEEEECC-------------TTCEEEEEECCCC----
T ss_pred CCCCCCCEEEEecCCC-------------cEEEEecCCCCceeeEEecCC-------------CCceEEEEEcCcccccc
Confidence 999 99998887443 899999985421 112111 13456789999
Q ss_pred -------CCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCce----EEeecccccCCeeeccC---CceEEEEE
Q 002209 409 -------DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE----ILHKLDLRYGGISWCDD---SLALVYES 474 (953)
Q Consensus 409 -------Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~----~l~~~~~~~~~~~~SpD---g~~l~~~~ 474 (953)
|++.++.. +..+.|.+||+ ..+.... .+..+...+..++|+|| ++.|+...
T Consensus 164 ~~~~~~~~~~~l~~~-------------~~dg~i~i~d~--~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 164 GEHNGTKESRKFVTG-------------GADNLVKIWKY--NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp ------CTTCEEEEE-------------ETTSCEEEEEE--ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ccccCCCCCCEEEEE-------------eCCCeEEEEEe--cCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence 67766555 34557888886 2222221 23344566778999999 77777765
Q ss_pred ecccCceEEEEEcCCCCCCCcEEeecC--CCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 475 WYKTRRTRTWVISPGSKDVAPRILFDR--SSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 475 ~~~~~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
.++. .++|.++..... ....+... ....+.. +.|+|||++|+....
T Consensus 229 ~dg~--i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~------~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 229 QDRT--CIIWTQDNEQGP-WKKTLLKEEKFPDVLWR------ASWSLSGNVLALSGG 276 (379)
T ss_dssp TTSC--EEEEEESSTTSC-CEEEESSSSCCSSCEEE------EEECSSSCCEEEEES
T ss_pred CCCE--EEEEeCCCCCcc-ceeeeeccccCCCcEEE------EEEcCCCCEEEEecC
Confidence 4432 366665543211 11222211 1112222 789999999988763
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.9e-10 Score=124.95 Aligned_cols=291 Identities=8% Similarity=0.051 Sum_probs=165.5
Q ss_pred CcccceEecc-CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCC---------CccccccccceEEec-CCeE
Q 002209 189 AKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP---------DIYLNAIFDNFVWVN-NSTL 257 (953)
Q Consensus 189 ~~~~~~~wSP-DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~---------~~~~~~~~~~~~wsp-Dg~~ 257 (953)
..+....|+| ||+.|+.... ...|.++++++++........ .......+..+.|+| +++.
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGS---------DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEET---------TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred CcEEEEEEecCCCCEEEEEcC---------CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 4789999999 9999888552 457888888876544332100 000122377899999 6666
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-Cccc
Q 002209 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYT 335 (953)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~ 335 (953)
|+... ..+.|.++++ +++....... ..+.
T Consensus 115 l~s~~-------------------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (408)
T 4a11_B 115 FTSSS-------------------------------------------------FDKTLKVWDTNTLQTADVFNFEETVY 145 (408)
T ss_dssp EEEEE-------------------------------------------------TTSEEEEEETTTTEEEEEEECSSCEE
T ss_pred EEEEe-------------------------------------------------CCCeEEEeeCCCCccceeccCCCcee
Confidence 66551 2246777888 6654433323 5566
Q ss_pred ccccCC---CCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 336 SLDPSP---DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 336 ~~~~Sp---DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
.+.|+| +++.|+....+ +.|.+||+..+. ...+..+. ..+..++|+||++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~-------------~~v~~~d~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~ 199 (408)
T 4a11_B 146 SHHMSPVSTKHCLVAVGTRG-------------PKVQLCDLKSGSCSHILQGHR-------------QEILAVSWSPRYD 199 (408)
T ss_dssp EEEECSSCSSCCEEEEEESS-------------SSEEEEESSSSCCCEEECCCC-------------SCEEEEEECSSCT
T ss_pred eeEeecCCCCCcEEEEEcCC-------------CeEEEEeCCCcceeeeecCCC-------------CcEEEEEECCCCC
Confidence 677777 55577777643 389999998543 33333221 3456799999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCC-CceEE---------------eecccccCCeeeccCCceEEEEEe
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-GPEIL---------------HKLDLRYGGISWCDDSLALVYESW 475 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~-~~~~l---------------~~~~~~~~~~~~SpDg~~l~~~~~ 475 (953)
.+++.. +..+.+.+||+ ..+. ....+ ..+...+..+.|+|||+.|+....
T Consensus 200 ~ll~~~------------~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 200 YILATA------------SADSRVKLWDV--RRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp TEEEEE------------ETTSCEEEEET--TCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred cEEEEE------------cCCCcEEEEEC--CCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 755441 33457888886 2221 11222 233455667899999999988765
Q ss_pred cccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEe-ccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeE
Q 002209 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRR-TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFL 554 (953)
Q Consensus 476 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 554 (953)
++ .+.++++.++. ............ .. ......+ ...+..+++...+ ..+
T Consensus 266 dg----~i~vwd~~~~~-~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~---------------------~~i 316 (408)
T 4a11_B 266 DN----RMRLWNSSNGE-NTLVNYGKVCNN-SK--KGLKFTVSCGCSSEFVFVPYG---------------------STI 316 (408)
T ss_dssp TS----CEEEEETTTCC-BCCCCCCCCCCC-CS--SCCCCEECCSSSSCEEEEEET---------------------TEE
T ss_pred CC----eEEEEECCCCc-cceecccccccc-cc--ccceeEEecCCCceEEEEecC---------------------CEE
Confidence 43 45666666642 111111110000 00 0000112 2223334443321 259
Q ss_pred EEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCe
Q 002209 555 DLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (953)
Q Consensus 555 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~ 621 (953)
++||+.+++.......... .+. ..+|+||++.++..... ..+.+|++.+++.
T Consensus 317 ~v~d~~~~~~~~~~~~~~~----~v~-------~~~~s~~~~~l~s~~~d----g~i~iw~~~~~~~ 368 (408)
T 4a11_B 317 AVYTVYSGEQITMLKGHYK----TVD-------CCVFQSNFQELYSGSRD----CNILAWVPSLYEP 368 (408)
T ss_dssp EEEETTTCCEEEEECCCSS----CEE-------EEEEETTTTEEEEEETT----SCEEEEEECC---
T ss_pred EEEECcCCcceeeeccCCC----eEE-------EEEEcCCCCEEEEECCC----CeEEEEeCCCCCc
Confidence 9999998887665543322 122 24689999877644333 3588888877654
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.8e-13 Score=141.92 Aligned_cols=168 Identities=13% Similarity=0.110 Sum_probs=105.6
Q ss_pred HcCcEEEEcCCCCCCCCCChh-hh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccE
Q 002209 710 ARGFAILGGPTTPIIGEGDEE-AN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (953)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~-~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (953)
++||.|++ ++.+|+|.+. .. ........+|+.++++.+ ..+++.|+||||||.+++.++.++|+++++
T Consensus 67 ~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~ 137 (292)
T 3l80_A 67 PDSIGILT---IDAPNSGYSPVSNQANVGLRDWVNAILMIFEHF------KFQSYLLCVHSIGGFAALQIMNQSSKACLG 137 (292)
T ss_dssp CTTSEEEE---ECCTTSTTSCCCCCTTCCHHHHHHHHHHHHHHS------CCSEEEEEEETTHHHHHHHHHHHCSSEEEE
T ss_pred hhcCeEEE---EcCCCCCCCCCCCcccccHHHHHHHHHHHHHHh------CCCCeEEEEEchhHHHHHHHHHhCchheee
Confidence 37999999 4556777775 22 123556666666655543 235899999999999999999999999999
Q ss_pred EEEcccCCCCCC--CCcC------------ccc------c---c----------chhhh----hHHHHHhcCc-------
Q 002209 787 GIARSGAYNRTL--TPFG------------FQN------E---D----------RTLWE----ATSTYVEMSP------- 822 (953)
Q Consensus 787 ~v~~~~~~d~~~--~~~~------------~~~------~---~----------~~~~~----~~~~~~~~sp------- 822 (953)
+|+++|...... .... ... . . ...+. ....+....+
T Consensus 138 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (292)
T 3l80_A 138 FIGLEPTTVMIYRAGFSSDLYPQLALRRQKLKTAADRLNYLKDLSRSHFSSQQFKQLWRGYDYCQRQLNDVQSLPDFKIR 217 (292)
T ss_dssp EEEESCCCHHHHHHCTTSSSSHHHHHHHHTCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTTTSTTCCSS
T ss_pred EEEECCCCcchhhhccccccchhHHHHHHHHhccCchhhhHhhccccccCHHHHHHhHHHHHHHHHHHHhhhhccccchh
Confidence 999984321000 0000 000 0 0 00000 0011112222
Q ss_pred --------ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 823 --------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 823 --------~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
...+.+ ++|+|+++|++|..++ +. + ++.+.+. ..+ +++++++|... .++.+.+.+.+.+||
T Consensus 218 ~~~~~~~~~~~l~~-~~P~lii~g~~D~~~~--~~-~-~~~~~~~----~~~-~~~~~~gH~~~-~e~p~~~~~~i~~fl 286 (292)
T 3l80_A 218 LALGEEDFKTGISE-KIPSIVFSESFREKEY--LE-S-EYLNKHT----QTK-LILCGQHHYLH-WSETNSILEKVEQLL 286 (292)
T ss_dssp CCCCGGGGCCCCCT-TSCEEEEECGGGHHHH--HT-S-TTCCCCT----TCE-EEECCSSSCHH-HHCHHHHHHHHHHHH
T ss_pred hhhcchhhhhccCC-CCCEEEEEccCccccc--hH-H-HHhccCC----Cce-eeeCCCCCcch-hhCHHHHHHHHHHHH
Confidence 123344 7899999999999876 55 4 4443322 235 88999999763 466778889999999
Q ss_pred HHh
Q 002209 895 QKY 897 (953)
Q Consensus 895 ~~~ 897 (953)
+++
T Consensus 287 ~~~ 289 (292)
T 3l80_A 287 SNH 289 (292)
T ss_dssp HTC
T ss_pred Hhc
Confidence 865
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-09 Score=123.68 Aligned_cols=281 Identities=13% Similarity=0.130 Sum_probs=171.0
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
.+.+-..||+++ .||... +..|++||+.+|+..++..... ....+..++|+|||+.|+...
T Consensus 106 ~y~~~l~wS~~n-~lAvgl----------d~tV~lWd~~tg~~~~~~~~~~--~~~~V~sv~fspdg~~lasgs------ 166 (420)
T 4gga_A 106 YYLNLVDWSSGN-VLAVAL----------DNSVYLWSASSGDILQLLQMEQ--PGEYISSVAWIKEGNYLAVGT------ 166 (420)
T ss_dssp TTCBCEEECTTS-EEEEEE----------TTEEEEEETTTCCEEEEEECCS--TTCCEEEEEECTTSSEEEEEE------
T ss_pred ccceeEEECCCC-EEEEEe----------CCEEEEEECCCCCEEEEEEecC--CCCcEEEEEECCCCCEEEEEE------
Confidence 356778999864 666533 4689999999998876654322 111277999999999998761
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeCCC-CcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDG~~ 345 (953)
..+.|.++++ +++.. .+... ..+. ++++|++.
T Consensus 167 -------------------------------------------~Dg~v~iWd~~~~~~~~~~~~h~~~v~--~~s~~~~~ 201 (420)
T 4gga_A 167 -------------------------------------------SSAEVQLWDVQQQKRLRNMTSHSARVG--SLSWNSYI 201 (420)
T ss_dssp -------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEE--EEEEETTE
T ss_pred -------------------------------------------CCCeEEEEEcCCCcEEEEEeCCCCceE--EEeeCCCE
Confidence 2245667788 66543 33333 4443 45667888
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCce--EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~--~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
|+..+.+ ..+.+||..... ...+..+. ..+..+.|+|+|+.++..
T Consensus 202 l~sgs~d-------------~~i~~~d~~~~~~~~~~~~~h~-------------~~~~~~~~~~~g~~l~s~------- 248 (420)
T 4gga_A 202 LSSGSRS-------------GHIHHHDVRVAEHHVATLSGHS-------------QEVCGLRWAPDGRHLASG------- 248 (420)
T ss_dssp EEEEETT-------------SEEEEEETTSSSCEEEEEECCS-------------SCEEEEEECTTSSEEEEE-------
T ss_pred EEEEeCC-------------CceeEeeecccceeeEEecccc-------------cceeeeeecCCCCeeeee-------
Confidence 7776633 378889886432 23333221 234568899999977665
Q ss_pred CcccccccCCeEEEEecCCCCCCC----ceEEeecccccCCeeeccCCceEEEEEec-ccCceEEEEEcCCCCCCCcEEe
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEG----PEILHKLDLRYGGISWCDDSLALVYESWY-KTRRTRTWVISPGSKDVAPRIL 498 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~----~~~l~~~~~~~~~~~~SpDg~~l~~~~~~-~~~~~~l~~~d~~~~~~~~~~~ 498 (953)
...+.+.+++. ..+.. ..........+..++|+|++..+++.... ..+ .|.++|+.++ +....
T Consensus 249 ------~~D~~v~i~~~--~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~--~I~iwd~~t~--~~~~~ 316 (420)
T 4gga_A 249 ------GNDNLVNVWPS--APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR--HIRIWNVCSG--ACLSA 316 (420)
T ss_dssp ------ETTSCEEEEES--SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTC--EEEEEETTTT--EEEEE
T ss_pred ------eccccceEEee--ccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCC--EEEEEeCCcc--cccee
Confidence 44567888885 22211 22334455667788999998877665432 122 5666677764 22222
Q ss_pred ecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceee
Q 002209 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYET 578 (953)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~ 578 (953)
...... +.. +.|+|+++.++...... ...|++||+.+++......+... .
T Consensus 317 ~~~~~~-v~~------~~~~~~~~~lv~~sg~~-------------------d~~I~iwd~~~~~~v~~l~gH~~----~ 366 (420)
T 4gga_A 317 VDAHSQ-VCS------ILWSPHYKELISGHGFA-------------------QNQLVIWKYPTMAKVAELKGHTS----R 366 (420)
T ss_dssp EECSSC-EEE------EEEETTTTEEEEEECTT-------------------TCCEEEEETTTCCEEEEECCCSS----C
T ss_pred eccccc-eee------eeecCCCCeEEEEEecC-------------------CCEEEEEECCCCcEEEEEcCCCC----C
Confidence 222221 222 67999999887764211 12499999988876554443211 1
Q ss_pred eEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002209 579 TVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (953)
Q Consensus 579 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g 619 (953)
+.. .+|+|||+.|+- .+.. ..|.+|++...
T Consensus 367 V~~-------l~~spdg~~l~S-~s~D---~tvriWdv~~~ 396 (420)
T 4gga_A 367 VLS-------LTMSPDGATVAS-AAAD---ETLRLWRCFEL 396 (420)
T ss_dssp EEE-------EEECTTSSCEEE-EETT---TEEEEECCSCS
T ss_pred EEE-------EEEcCCCCEEEE-EecC---CeEEEEECCCC
Confidence 222 368999987663 3332 35888886543
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-11 Score=128.17 Aligned_cols=214 Identities=14% Similarity=0.040 Sum_probs=126.8
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|..++.... +.+ .. .|.||++||.+.. ...|. .....| +.+|.|++ .|.+|+
T Consensus 11 ~~g~~l~y~~~-~~G----~~--~p~vvllHG~~~~--------------~~~w~-~~~~~L-~~~~rvia---~DlrGh 64 (276)
T 2wj6_A 11 VFDNKLSYIDN-QRD----TD--GPAILLLPGWCHD--------------HRVYK-YLIQEL-DADFRVIV---PNWRGH 64 (276)
T ss_dssp ETTEEEEEEEC-CCC----CS--SCEEEEECCTTCC--------------GGGGH-HHHHHH-TTTSCEEE---ECCTTC
T ss_pred eCCeEEEEEEe-cCC----CC--CCeEEEECCCCCc--------------HHHHH-HHHHHH-hcCCEEEE---eCCCCC
Confidence 47877765543 111 11 3789999996321 11111 223334 46799999 555788
Q ss_pred CChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCcccEEEEcccCCCCCCCC---
Q 002209 727 GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTLTP--- 800 (953)
Q Consensus 727 G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~d~~~~~--- 800 (953)
|.|.... .......+|+.+.++.+ +-+++.|+||||||.+++.++.++ |++++++|++++........
T Consensus 65 G~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~~~~~~~~~~~~ 138 (276)
T 2wj6_A 65 GLSPSEVPDFGYQEQVKDALEILDQL------GVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAK 138 (276)
T ss_dssp SSSCCCCCCCCHHHHHHHHHHHHHHH------TCCSEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESCCCSSCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEECHHHHHHHHHHHHhCHHhhceEEEecccccCCCchHHH
Confidence 8875432 23667788888887775 235899999999999999999999 99999999987532100000
Q ss_pred --------cCccc------------ccc-h---------------hhhhH-----HHHHh-cCcccccCCCCCcEEEEEe
Q 002209 801 --------FGFQN------------EDR-T---------------LWEAT-----STYVE-MSPFMSANKLKKPILLVHG 838 (953)
Q Consensus 801 --------~~~~~------------~~~-~---------------~~~~~-----~~~~~-~sp~~~~~~i~~P~Li~~G 838 (953)
..+.. ... . .|... ..+.. .++...+.++++|+|+++|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lv~~~ 218 (276)
T 2wj6_A 139 SLTLLKDPERWREGTHGLFDVWLDGHDEKRVRHHLLEEMADYGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHI 218 (276)
T ss_dssp HHHHHHCTTTHHHHHHHHHHHHHTTBCCHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHTCSSCCCEEEE
T ss_pred HhhhccCcchHHHHHHHHHHHhhcccchHHHHHHHHHHhhhcchhhhhhccchhHHHHhhccchhhHHhhcCCCceEEEE
Confidence 00000 000 0 00000 00000 1122345678899999987
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
..|...+.+.....++.+.+ ...+++++|++||.. ..+..+.+.+.+.+||.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~----p~a~~~~i~~~gH~~-~~e~P~~~~~~i~~Fl~~~ 272 (276)
T 2wj6_A 219 FSQPTEPEYEKINSDFAEQH----PWFSYAKLGGPTHFP-AIDVPDRAAVHIREFATAI 272 (276)
T ss_dssp ECCSCSHHHHHHHHHHHHHC----TTEEEEECCCSSSCH-HHHSHHHHHHHHHHHHHHH
T ss_pred ecCccchhHHHHHHHHHhhC----CCeEEEEeCCCCCcc-cccCHHHHHHHHHHHHhhc
Confidence 54433220011223333222 347999999999975 3567788899999999764
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-10 Score=126.19 Aligned_cols=244 Identities=12% Similarity=0.077 Sum_probs=135.2
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCcee---ecccCCCccccccccceEEec--CCeEEEEEec
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR---PLFQSPDIYLNAIFDNFVWVN--NSTLLVCTIP 263 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~---~lt~~~~~~~~~~~~~~~wsp--Dg~~l~~~~~ 263 (953)
..+...+|+|||++||.... ...|.++|+.+++.. .+..+.. .+..++|++ +|+.|+...
T Consensus 14 ~~V~~v~~s~~g~~lasgs~---------D~~v~lwd~~~~~~~~~~~l~gH~~-----~V~~v~~~~~~~~~~l~s~s- 78 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSS---------DRSVKIFDVRNGGQILIADLRGHEG-----PVWQVAWAHPMYGNILASCS- 78 (316)
T ss_dssp CCEEEEEECGGGCEEEEEET---------TTEEEEEEEETTEEEEEEEEECCSS-----CEEEEEECCGGGSSCEEEEE-
T ss_pred CeEEEeeEcCCCCEEEEEeC---------CCeEEEEEecCCCcEEEEEEcCCCc-----cEEEEEeCCCCCCCEEEEEE-
Confidence 36888999999999988552 456777777666432 2322222 277899985 478777651
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc---eeEeCCC-Ccccccc
Q 002209 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLD 338 (953)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~---~~~l~~~-~~~~~~~ 338 (953)
..+.+.++|+ +++ ...+... ..+..++
T Consensus 79 ------------------------------------------------~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~ 110 (316)
T 3bg1_A 79 ------------------------------------------------YDRKVIIWREENGTWEKSHEHAGHDSSVNSVC 110 (316)
T ss_dssp ------------------------------------------------TTSCEEEECCSSSCCCEEEEECCCSSCCCEEE
T ss_pred ------------------------------------------------CCCEEEEEECCCCcceEEEEccCCCCceEEEE
Confidence 1234556677 553 2233333 6788999
Q ss_pred cCCC--CcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002209 339 PSPD--EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (953)
Q Consensus 339 ~SpD--G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~ 415 (953)
|+|| |+.|+..+.+. .|.+|++.++. ........ .....+..++|+|++..-.+
T Consensus 111 ~~p~~~g~~lasgs~D~-------------~i~lwd~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 111 WAPHDYGLILACGSSDG-------------AISLLTYTGEGQWEVKKINN----------AHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp ECCTTTCSCEEEECSSS-------------CEEEEEECSSSCEEECCBTT----------SSSSCBCCCEECCCCCC---
T ss_pred ECCCCCCcEEEEEcCCC-------------CEEEEecCCCCCcceeeeec----------cccCCcceEEEccccCCccc
Confidence 9998 78888776443 89999997542 22111111 11234467889998421000
Q ss_pred EEEec----cCCCcccccccCCeEEEEecCCCCCCCceE---EeecccccCCeeeccCC----ceEEEEEecccCceEEE
Q 002209 416 WAETQ----DGGDAKVEVTPRDIIYTQQAEPVQGEGPEI---LHKLDLRYGGISWCDDS----LALVYESWYKTRRTRTW 484 (953)
Q Consensus 416 ~~~~~----~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~---l~~~~~~~~~~~~SpDg----~~l~~~~~~~~~~~~l~ 484 (953)
..... ..+......+..+.|.+|++ ..++.... +..+...+..++|+|++ +.|+..+.++. .+||
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~--~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~--v~iw 243 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKE--EEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR--VFIW 243 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEE--CTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE--EEEE
T ss_pred cccccccCccccceEEEecCCCeEEEEEe--CCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe--EEEE
Confidence 00000 00000111133556778885 12222122 34455667789999997 66766655442 3555
Q ss_pred EEcCCC-CCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 485 VISPGS-KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 485 ~~d~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
.++... +......+ ......++. ++|+|||++|+....
T Consensus 244 ~~~~~~~~~~~~~~~-~~~~~~v~~------v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 244 TCDDASSNTWSPKLL-HKFNDVVWH------VSWSITANILAVSGG 282 (316)
T ss_dssp ECSSTTCCCCBCCEE-EECSSCEEE------EEECTTTCCEEEEES
T ss_pred EccCccccchhhhhh-hcCCCcEEE------EEEcCCCCEEEEEcC
Confidence 544311 11111222 222223333 889999999988763
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=6.8e-10 Score=122.48 Aligned_cols=131 Identities=14% Similarity=0.019 Sum_probs=71.3
Q ss_pred ccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002209 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (953)
Q Consensus 336 ~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~ 415 (953)
...++|||+.+++.+.. +.++++|+.+...+.+..................+.+.++++|||+.++.
T Consensus 204 ~~~~~~~g~~~~~~~~~-------------~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv 270 (361)
T 2oiz_A 204 FIAPALDKDKAHFVSYY-------------GNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYV 270 (361)
T ss_dssp CSCCEECSSEEEEEBTT-------------SEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEE
T ss_pred EEEecccCCEEEEEeCC-------------CeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEE
Confidence 44568999988887622 37899998754433222111000000000001123345889999987654
Q ss_pred EEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
.. ..++... ........|+++|+ ..++. ..+..+. ...++|||||++|+.+ +. . .|.++|++++
T Consensus 271 ~~-~~~~~~~-~~~~~~~~v~viD~---~t~~~v~~i~~~~--p~~ia~spdg~~l~v~-n~--~--~v~v~D~~t~ 335 (361)
T 2oiz_A 271 FM-HPDGKEG-THKFPAAEIWVMDT---KTKQRVARIPGRD--ALSMTIDQQRNLMLTL-DG--G--NVNVYDISQP 335 (361)
T ss_dssp EE-ESSCCTT-CTTCCCSEEEEEET---TTTEEEEEEECTT--CCEEEEETTTTEEEEE-CS--S--CEEEEECSSS
T ss_pred EE-ccCCCcc-cccCCCceEEEEEC---CCCcEEEEEecCC--eeEEEECCCCCEEEEe-CC--C--eEEEEECCCC
Confidence 42 2111110 00122458999996 33333 2333333 7889999999977654 43 2 5778888874
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-10 Score=131.40 Aligned_cols=244 Identities=10% Similarity=0.069 Sum_probs=142.4
Q ss_pred CCCCceecC-CCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCC--CCCCceeeeecCC
Q 002209 110 PLPALSFSP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPD--GKLGQEIEIQGFP 186 (953)
Q Consensus 110 ~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~--g~~~~~~~l~~~~ 186 (953)
.+..++||| ||++||..+.+ +.|.|||+... +.... ..++ +.
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~d---------------------------------g~v~vwd~~~~~~~~~~~-~~~~-~~ 109 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQ---------------------------------GVIKIWNLKEIIVGEVYS-SSLT-YD 109 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETT---------------------------------SEEEEEEHHHHHTTCCCS-CSEE-EE
T ss_pred ceEEEEECCCCCCEEEEecCC---------------------------------ceEEEeECcccccCcccc-eeee-cc
Confidence 677899999 99999998875 36799998431 11011 1111 12
Q ss_pred CCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECC---CCceeecccCCCcc--------ccccccceE--Eec
Q 002209 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD---TGKARPLFQSPDIY--------LNAIFDNFV--WVN 253 (953)
Q Consensus 187 ~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~---~g~~~~lt~~~~~~--------~~~~~~~~~--wsp 253 (953)
....+....|+||++.|+.... ...|.+++++ .++..+........ ....+..+. |++
T Consensus 110 h~~~v~~~~~~~~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 180 (437)
T 3gre_A 110 CSSTVTQITMIPNFDAFAVSSK---------DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE 180 (437)
T ss_dssp CSSCEEEEEECTTSSEEEEEET---------TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred CCCCEEEEEEeCCCCEEEEEeC---------CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC
Confidence 3347899999999999887652 3455555552 34332221100000 000022222 667
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCC-
Q 002209 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGP- 330 (953)
Q Consensus 254 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~- 330 (953)
|++.|+... ..+.|.++|+ +++ ...+..
T Consensus 181 ~~~~l~~~~-------------------------------------------------~d~~i~iwd~~~~~~~~~~~~~ 211 (437)
T 3gre_A 181 EKSLLVALT-------------------------------------------------NLSRVIIFDIRTLERLQIIENS 211 (437)
T ss_dssp SCEEEEEEE-------------------------------------------------TTSEEEEEETTTCCEEEEEECC
T ss_pred CCCEEEEEe-------------------------------------------------CCCeEEEEeCCCCeeeEEEccC
Confidence 888877661 2356778888 664 344443
Q ss_pred -C-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccce---
Q 002209 331 -P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSI--- 404 (953)
Q Consensus 331 -~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~--- 404 (953)
. ..+..++|+|||++|+..+.++ .|.+||+..+... .+.. ... ..+..+
T Consensus 212 ~h~~~v~~~~~s~~~~~l~s~~~dg-------------~i~iwd~~~~~~~~~~~~-~~~-----------~~v~~~~~~ 266 (437)
T 3gre_A 212 PRHGAVSSICIDEECCVLILGTTRG-------------IIDIWDIRFNVLIRSWSF-GDH-----------APITHVEVC 266 (437)
T ss_dssp GGGCCEEEEEECTTSCEEEEEETTS-------------CEEEEETTTTEEEEEEBC-TTC-----------EEEEEEEEC
T ss_pred CCCCceEEEEECCCCCEEEEEcCCC-------------eEEEEEcCCccEEEEEec-CCC-----------CceEEEEec
Confidence 2 6788999999999999887443 8999999865543 3321 110 123455
Q ss_pred -eeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee--------------------------cccc
Q 002209 405 -NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--------------------------LDLR 457 (953)
Q Consensus 405 -~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~--------------------------~~~~ 457 (953)
.|+|||+.++.. +..+.|.+||+ .++.....+.. ....
T Consensus 267 ~~~s~~~~~l~s~-------------~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 331 (437)
T 3gre_A 267 QFYGKNSVIVVGG-------------SSKTFLTIWNF--VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNA 331 (437)
T ss_dssp TTTCTTEEEEEEE-------------STTEEEEEEET--TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGG
T ss_pred cccCCCccEEEEE-------------cCCCcEEEEEc--CCCcEEEEEEcCCCCCccceecccccccccceecccccCCc
Confidence 556677655544 44557889986 22222222322 2223
Q ss_pred cCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 458 ~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
+..++|+ +++.|+..+.++ .|.++|+.++
T Consensus 332 v~~l~~~-~~~~l~s~~~d~----~i~~wd~~~~ 360 (437)
T 3gre_A 332 LSTISVS-NDKILLTDEATS----SIVMFSLNEL 360 (437)
T ss_dssp GCCEEEE-TTEEEEEEGGGT----EEEEEETTCG
T ss_pred eEEEEEC-CceEEEecCCCC----eEEEEECCCc
Confidence 4567788 677666654433 5666677664
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-09 Score=120.42 Aligned_cols=135 Identities=9% Similarity=-0.039 Sum_probs=77.0
Q ss_pred cccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCce
Q 002209 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (953)
Q Consensus 335 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~ 414 (953)
..+.+++|+..++|.+.. +.++++|+.+...+.+...+..............+...+.++|||++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~-------------~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly 282 (373)
T 2mad_H 216 TQPAQANKSGRIVWPVYS-------------GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY 282 (373)
T ss_pred ecceeEecCCEEEEEcCC-------------ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence 346778888888887632 3788999876544433322111000000000112223477899998776
Q ss_pred EEEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
...+....+ ......+.|+++|+ ...+. ..+ .......+++|||||++++|..+.... .|.++|+.++
T Consensus 283 V~~~~~~~~---~~~~~~~~V~VID~---~t~~vv~~i-~~g~~p~~i~~s~Dg~~~l~v~~~~~~--~V~ViD~~t~ 351 (373)
T 2mad_H 283 LLTSEQSAW---KLHAAAKEVTSVTG---LVGQTSSQI-SLGHDVDAISVAQDGGPDLYALSAGTE--VLHIYDAGAG 351 (373)
T ss_pred EEeccCCcc---cccCCCCeEEEEEC---CCCEEEEEE-ECCCCcCeEEECCCCCeEEEEEcCCCC--eEEEEECCCC
Confidence 653321100 00122458999996 44443 344 333356789999999977777664333 7999999885
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=9e-09 Score=119.55 Aligned_cols=322 Identities=10% Similarity=0.017 Sum_probs=176.3
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECC--CCcee-ecccCCCc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD--TGKAR-PLFQSPDI 240 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~--~g~~~-~lt~~~~~ 240 (953)
.|+++|..+ + ..... ++.+.....+.+||||++|+...+ ...|.++|+. +++.. ++.. ...
T Consensus 178 ~V~viD~~t-~--~v~~~---i~~g~~p~~v~~SpDGr~lyv~~~---------dg~V~viD~~~~t~~~v~~i~~-G~~ 241 (567)
T 1qks_A 178 QIALIDGST-Y--EIKTV---LDTGYAVHISRLSASGRYLFVIGR---------DGKVNMIDLWMKEPTTVAEIKI-GSE 241 (567)
T ss_dssp EEEEEETTT-C--CEEEE---EECSSCEEEEEECTTSCEEEEEET---------TSEEEEEETTSSSCCEEEEEEC-CSE
T ss_pred eEEEEECCC-C--eEEEE---EeCCCCccceEECCCCCEEEEEcC---------CCeEEEEECCCCCCcEeEEEec-CCC
Confidence 678988743 2 11222 333445568899999998876431 3479999995 55433 2322 211
Q ss_pred cccccccceEEe----cCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceE
Q 002209 241 YLNAIFDNFVWV----NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQL 316 (953)
Q Consensus 241 ~~~~~~~~~~ws----pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l 316 (953)
...+++| |||++++++. +...++
T Consensus 242 -----P~~ia~s~~~~pDGk~l~v~n------------------------------------------------~~~~~v 268 (567)
T 1qks_A 242 -----ARSIETSKMEGWEDKYAIAGA------------------------------------------------YWPPQY 268 (567)
T ss_dssp -----EEEEEECCSTTCTTTEEEEEE------------------------------------------------EETTEE
T ss_pred -----CceeEEccccCCCCCEEEEEE------------------------------------------------ccCCeE
Confidence 3478899 6999998771 022456
Q ss_pred EEEEc-CCceeE-eCCC------------CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEec
Q 002209 317 VLVSL-DGTVKE-IGPP------------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELC 382 (953)
Q Consensus 317 ~~~~~-~g~~~~-l~~~------------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~ 382 (953)
.++|. +.++.. +... ..+..+..|+++..+++... ..+.|+++|........++
T Consensus 269 ~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~------------~~g~v~~vd~~~~~~~~v~ 336 (567)
T 1qks_A 269 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK------------ETGKILLVDYTDLNNLKTT 336 (567)
T ss_dssp EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET------------TTTEEEEEETTCSSEEEEE
T ss_pred EEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec------------CCCeEEEEecCCCccceee
Confidence 67776 554332 2211 12345667888776665541 2358888888643222222
Q ss_pred cCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec--ccc--c
Q 002209 383 DLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLR--Y 458 (953)
Q Consensus 383 ~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~--~~~--~ 458 (953)
..+.. .....+.|+|||+.++... ...+.|.++|+ ..++....... ... .
T Consensus 337 ~i~~~-----------~~~~d~~~~pdgr~~~va~------------~~sn~V~ViD~---~t~kl~~~i~vgg~~Phpg 390 (567)
T 1qks_A 337 EISAE-----------RFLHDGGLDGSHRYFITAA------------NARNKLVVIDT---KEGKLVAIEDTGGQTPHPG 390 (567)
T ss_dssp EEECC-----------SSEEEEEECTTSCEEEEEE------------GGGTEEEEEET---TTTEEEEEEECSSSSBCCT
T ss_pred eeecc-----------ccccCceECCCCCEEEEEe------------CCCCeEEEEEC---CCCcEEEEEeccCcCCCCc
Confidence 21110 1123578999999655541 23567999996 43433222221 111 1
Q ss_pred CCee-eccCCceEEEEEecccCceEEEEEcCCCCCC---CcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCC
Q 002209 459 GGIS-WCDDSLALVYESWYKTRRTRTWVISPGSKDV---APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDE 534 (953)
Q Consensus 459 ~~~~-~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~ 534 (953)
..+. +.||++.++++.+.+.. .+-+++.+.+.. ..+.+....... .++..+..+|||++|+.....
T Consensus 391 ~g~~~~~p~~g~v~~t~~~g~~--~Vsvid~~~~~~~~~~~kvv~~i~~~g----~g~~~i~~~p~~~~l~v~~~~---- 460 (567)
T 1qks_A 391 RGANFVHPTFGPVWATSHMGDD--SVALIGTDPEGHPDNAWKILDSFPALG----GGSLFIKTHPNSQYLYVDATL---- 460 (567)
T ss_dssp TCEEEEETTTEEEEEEEBSSSS--EEEEEECCTTTCTTTBTSEEEEEECSC----SCCCCEECCTTCSEEEEECTT----
T ss_pred cceeeECCCCCcEEEeCCCCCC--eEEEecCCCCCCccccCEEEEEEecCC----CCCEEEEeCCCCCeEEEecCC----
Confidence 2444 47888887766544333 577888766211 011211111000 122226789999998765410
Q ss_pred CcEEEEecCCCCCCC-CCCeEEEEECCCCce-------EEEecc------CcccceeeeEeeccCCccccccccCCEEEE
Q 002209 535 GTYILLNGNGATPEG-NIPFLDLFDINTGSK-------ERIWES------DKEKYYETTVALMSDQTEGDLYLNQLKILT 600 (953)
Q Consensus 535 ~~~~~~~~~~~~~~~-~~~~L~~~d~~~~~~-------~~l~~~------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 600 (953)
.++. ....+.++|+++.+. +.|.-. ++. ..+. .+.|++||+++++
T Consensus 461 -----------~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~-------~~~~~~~G~~~~~ 519 (567)
T 1qks_A 461 -----------NPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQ---PRVV-------QGEFNKDGTEVWF 519 (567)
T ss_dssp -----------CSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSC---CEEE-------EEEECTTSSEEEE
T ss_pred -----------CCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCC---cceE-------eeeECCCCCEEEE
Confidence 0000 012589999876511 223111 000 0011 2578999999999
Q ss_pred EEecCC-CCceEEEEECCCCCeeE
Q 002209 601 SKESKT-ENTQYYIQSWPDKKSCQ 623 (953)
Q Consensus 601 ~~~~~~-~p~~l~~~~~~~g~~~~ 623 (953)
+.+... ....|.++|..+++.+.
T Consensus 520 s~~~~~~~~~~i~v~D~~t~~~~~ 543 (567)
T 1qks_A 520 SVWNGKDQESALVVVDDKTLELKH 543 (567)
T ss_dssp EEECCTTSCCEEEEEETTTTEEEE
T ss_pred EeecCCCCCCcEEEEECCCceEEE
Confidence 866533 45679999988886543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.8e-10 Score=122.20 Aligned_cols=238 Identities=15% Similarity=0.164 Sum_probs=136.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCC---C-ceeeeecC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL---G-QEIEIQGF 185 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~---~-~~~~l~~~ 185 (953)
.+..++|||||++||..+.+ +.|.||++...... . ....+.++
T Consensus 60 ~v~~v~~sp~~~~las~s~D---------------------------------~~v~iw~~~~~~~~~~~~~~~~~~~~h 106 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAGSFD---------------------------------STVSIWAKEESADRTFEMDLLAIIEGH 106 (330)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SCEEEEEC-------CCCEEEEEEC--
T ss_pred CEEEEEECCCCCEEEEEeCC---------------------------------CcEEEEEcccCcCccccceeEEEEcCC
Confidence 56789999999999988875 36789987421100 0 11223222
Q ss_pred CCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECC-CCc---ee-ecccCCCccccccccceEEecCCeEEEE
Q 002209 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-TGK---AR-PLFQSPDIYLNAIFDNFVWVNNSTLLVC 260 (953)
Q Consensus 186 ~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~-~g~---~~-~lt~~~~~~~~~~~~~~~wspDg~~l~~ 260 (953)
...+....|||||++|+.... ...|.++|+. +++ .. .+..+.. .+..+.|+|||+.|+.
T Consensus 107 --~~~V~~v~~sp~g~~las~s~---------D~~v~iwd~~~~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~l~s 170 (330)
T 2hes_X 107 --ENEVKGVAWSNDGYYLATCSR---------DKSVWIWETDESGEEYECISVLQEHSQ-----DVKHVIWHPSEALLAS 170 (330)
T ss_dssp ----CEEEEEECTTSCEEEEEET---------TSCEEEEECCTTCCCCEEEEEECCCSS-----CEEEEEECSSSSEEEE
T ss_pred --CCcEEEEEECCCCCEEEEEeC---------CCEEEEEeccCCCCCeEEEEEeccCCC-----ceEEEEECCCCCEEEE
Confidence 236889999999999988652 4567777773 322 11 2222222 2778999999998886
Q ss_pred EecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC---ceeEeCCC-Cccc
Q 002209 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG---TVKEIGPP-AVYT 335 (953)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g---~~~~l~~~-~~~~ 335 (953)
.. ..+.|.++++ ++ ....+... ..+.
T Consensus 171 ~s-------------------------------------------------~D~~i~iW~~~~~~~~~~~~~~~h~~~v~ 201 (330)
T 2hes_X 171 SS-------------------------------------------------YDDTVRIWKDYDDDWECVAVLNGHEGTVW 201 (330)
T ss_dssp EE-------------------------------------------------TTSCEEEEEEETTEEEEEEEECCCSSCEE
T ss_pred Ec-------------------------------------------------CCCeEEEEECCCCCeeEEEEccCCCCcEE
Confidence 61 1123444555 44 23334444 6778
Q ss_pred ccccCCC--CcEEEEEEecCCccccccCCCCCcceEEEeccCce------EEEeccCCCcccCCccccccccCccceeec
Q 002209 336 SLDPSPD--EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF------VRELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (953)
Q Consensus 336 ~~~~SpD--G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~------~~~l~~~~~~~~~p~~~~~~~~~~~~~~ws 407 (953)
.++|+|| +..|+..+.+ +.|.+|++.++. ...+...+. .....+..++|+
T Consensus 202 ~~~~~~~~~~~~l~s~s~D-------------~~v~iw~~~~~~~~~~~~~~~~~~~~~---------~h~~~v~~v~~s 259 (330)
T 2hes_X 202 SSDFDKTEGVFRLCSGSDD-------------STVRVWKYMGDDEDDQQEWVCEAILPD---------VHKRQVYNVAWG 259 (330)
T ss_dssp EEEECCSSSSCEEEEEETT-------------SCEEEEEEEEECTTSCEEEEEEEECCS---------CCSSCEEEEEEC
T ss_pred EEEecCCCCeeEEEEEeCC-------------CeEEEEEecCCCccccceeEEeeeccc---------ccccceEEEEEc
Confidence 8999999 6677766644 389999986431 011111110 012345678999
Q ss_pred cCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE----eeccc-ccCCeeecc--CCceEEEEEecccCc
Q 002209 408 SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL----HKLDL-RYGGISWCD--DSLALVYESWYKTRR 480 (953)
Q Consensus 408 pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l----~~~~~-~~~~~~~Sp--Dg~~l~~~~~~~~~~ 480 (953)
+++ .|+.. +..+.|.+|+. ..++.+.+ ..+.. .+..++|+| |++.|+..+.++.
T Consensus 260 ~~~-~l~s~-------------~~dg~v~iw~~---~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~-- 320 (330)
T 2hes_X 260 FNG-LIASV-------------GADGVLAVYEE---VDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI-- 320 (330)
T ss_dssp TTS-CEEEE-------------ETTSCEEEEEE---ETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE--
T ss_pred CCC-EEEEE-------------eCCCEEEEEEc---CCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCc--
Confidence 766 34433 34557888885 33322222 12222 566789999 7888887765542
Q ss_pred eEEEEE
Q 002209 481 TRTWVI 486 (953)
Q Consensus 481 ~~l~~~ 486 (953)
.+||.+
T Consensus 321 v~~W~~ 326 (330)
T 2hes_X 321 VNFWSL 326 (330)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 355543
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-10 Score=127.07 Aligned_cols=117 Identities=11% Similarity=-0.014 Sum_probs=79.6
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHc---------CcEEEE
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR---------GFAILG 717 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~---------G~~V~~ 717 (953)
.+|..|+...+.+.. +..|.||++||.+... ..+. .....|++. ||.|++
T Consensus 75 i~g~~i~~~~~~~~~------~~~~plll~HG~~~s~--------------~~~~-~~~~~L~~~~~~~~~~~~~~~vi~ 133 (388)
T 4i19_A 75 IDGATIHFLHVRSPE------PDATPMVITHGWPGTP--------------VEFL-DIIGPLTDPRAHGGDPADAFHLVI 133 (388)
T ss_dssp ETTEEEEEEEECCSS------TTCEEEEEECCTTCCG--------------GGGH-HHHHHHHCGGGGTSCGGGCEEEEE
T ss_pred ECCeEEEEEEccCCC------CCCCeEEEECCCCCCH--------------HHHH-HHHHHHhCcccccCCCCCCeEEEE
Confidence 488999987776542 1257799999975221 1111 233445554 999999
Q ss_pred cCCCCCCCCCChhhhhh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 718 GPTTPIIGEGDEEANDR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~~---~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
+ +..|+|.+..... .......|+.+.++.+ ..+++.++||||||.+++.++.++|++++++++.++.
T Consensus 134 ~---dl~G~G~S~~~~~~~~~~~~~a~~~~~l~~~l------g~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 203 (388)
T 4i19_A 134 P---SLPGFGLSGPLKSAGWELGRIAMAWSKLMASL------GYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQ 203 (388)
T ss_dssp E---CCTTSGGGCCCSSCCCCHHHHHHHHHHHHHHT------TCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCC
T ss_pred E---cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHc------CCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCC
Confidence 4 4467777754321 2344455554444432 2358999999999999999999999999999999864
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-10 Score=141.74 Aligned_cols=240 Identities=12% Similarity=0.127 Sum_probs=150.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCC-CC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DG 188 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~-~~ 188 (953)
.+..++|||||++|+....+ +.|.||++.. +....+..+. +.
T Consensus 11 ~V~~l~~s~dg~~latg~~d---------------------------------g~I~vwd~~~----~~~~~~~~l~~h~ 53 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSD---------------------------------KTIKIFEVEG----ETHKLIDTLTGHE 53 (753)
T ss_dssp CEEEECCCSSSCCEEEEETT---------------------------------TEEEEEEEET----TEEEEEEEECCCS
T ss_pred eeEEEEECCCCCeEEEEECC---------------------------------CcEEEEecCC----CCCccceeccCCc
Confidence 56778999999999988765 3678999852 2222222222 22
Q ss_pred CcccceEeccC--CCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecC--CeEEEEEecC
Q 002209 189 AKLNFVTWSQD--GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN--STLLVCTIPL 264 (953)
Q Consensus 189 ~~~~~~~wSPD--G~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD--g~~l~~~~~~ 264 (953)
..+....|+|+ |+.|+.... +..|.++++.+++...+..... ....+..++|+|+ |+.|+++.
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~---------Dg~I~vwd~~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~~l~sgs-- 120 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSY---------DGKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVAS-- 120 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEET---------TSCEEEEEEETTEEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEE--
T ss_pred CceEEEEecCCCCCCEEEEEeC---------CCeEEEEECCCCcccccccccC--CCCCeEEEEECCCCCCCEEEEEe--
Confidence 47899999998 888888652 4567777777775222211111 1112778999999 88888761
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC---ceeEeCCC-Cccccccc
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG---TVKEIGPP-AVYTSLDP 339 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g---~~~~l~~~-~~~~~~~~ 339 (953)
..+.|.++|+ ++ ....+... ..+..+.|
T Consensus 121 -----------------------------------------------~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~ 153 (753)
T 3jro_A 121 -----------------------------------------------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153 (753)
T ss_dssp -----------------------------------------------TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEE
T ss_pred -----------------------------------------------CCCcEEEEEeecCCCcceeEeecCCCceEEEEe
Confidence 2245667777 44 22233333 67888999
Q ss_pred CC-------------CCcEEEEEEecCCccccccCCCCCcceEEEeccCce-E-EEeccCCCcccCCccccccccCccce
Q 002209 340 SP-------------DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-V-RELCDLPLAEDIPIAFNSVRKGMRSI 404 (953)
Q Consensus 340 Sp-------------DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~-~~l~~~~~~~~~p~~~~~~~~~~~~~ 404 (953)
+| ||+.|+..+.++ .|.+||+.++. . ..+.... +....+..+
T Consensus 154 ~p~~~~~~~~~~~~~d~~~l~sgs~dg-------------~I~iwd~~~~~~~~~~~~~~~----------~h~~~V~~l 210 (753)
T 3jro_A 154 APATIEEDGEHNGTKESRKFVTGGADN-------------LVKIWKYNSDAQTYVLESTLE----------GHSDWVRDV 210 (753)
T ss_dssp CCCC---------CGGGCCEEEEETTS-------------CEEEEEEETTTTEEEEEEEEC----------CCSSCEEEE
T ss_pred cCcccccccccccCCCCCEEEEEECCC-------------eEEEEeccCCcccceeeeeec----------CCCCcEEEE
Confidence 99 688888887443 89999997542 1 1111111 112345689
Q ss_pred eeccC---CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC---ceEE---eecccccCCeeeccCCceEEEEEe
Q 002209 405 NWRSD---KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG---PEIL---HKLDLRYGGISWCDDSLALVYESW 475 (953)
Q Consensus 405 ~wspD---g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~---~~~l---~~~~~~~~~~~~SpDg~~l~~~~~ 475 (953)
+|+|| |+.++.. +..+.|.+|++ ..+. ...+ ......+..++|+|||+.|+..+.
T Consensus 211 ~~sp~~~~~~~l~s~-------------s~Dg~I~iwd~---~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~ 274 (753)
T 3jro_A 211 AWSPTVLLRSYLASV-------------SQDRTCIIWTQ---DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (753)
T ss_dssp EECCCCSSSEEEEEE-------------ESSSCEEEEEE---SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS
T ss_pred EeccCCCCCCEEEEE-------------ecCCEEEEecC---CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC
Confidence 99999 6655554 44567888886 2221 1111 224556778999999999888765
Q ss_pred cccCceEEEEEcCC
Q 002209 476 YKTRRTRTWVISPG 489 (953)
Q Consensus 476 ~~~~~~~l~~~d~~ 489 (953)
++ .+++++..
T Consensus 275 Dg----~I~vwd~~ 284 (753)
T 3jro_A 275 DN----KVTLWKEN 284 (753)
T ss_dssp SS----CEECCBCC
T ss_pred CC----EEEEEecC
Confidence 43 34444544
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-10 Score=132.71 Aligned_cols=264 Identities=8% Similarity=0.019 Sum_probs=147.0
Q ss_pred CCCCceecCC------CCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCC------
Q 002209 110 PLPALSFSPQ------RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG------ 177 (953)
Q Consensus 110 ~~~~~~~SPD------G~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~------ 177 (953)
.+..++|||+ |+.||..+.+ +.|.||++.......
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~D---------------------------------gtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQE---------------------------------GTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETT---------------------------------SCEEEEECCCCSSSSSEEECC
T ss_pred cEEEEEECCCCCCCCCCceEEEEecC---------------------------------CeEEEEEcCCCccccccceee
Confidence 4567788886 5677777765 367899985321100
Q ss_pred --ceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc-eee-cccCCCccccccccce--EE
Q 002209 178 --QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARP-LFQSPDIYLNAIFDNF--VW 251 (953)
Q Consensus 178 --~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~-~~~-lt~~~~~~~~~~~~~~--~w 251 (953)
....+.. ....+....|+|++ .|+... .+..|.++|+++++ +.. +..+.. . +..+ .|
T Consensus 256 ~~p~~~l~~--h~~~v~sv~~s~~~-~lasgs---------~DgtV~lWD~~~~~~~~~~~~~H~~-~----V~sv~~~~ 318 (524)
T 2j04_B 256 EKPSLTLSL--ADSLITTFDFLSPT-TVVCGF---------KNGFVAEFDLTDPEVPSFYDQVHDS-Y----ILSVSTAY 318 (524)
T ss_dssp CSCSEEECC--TTTCEEEEEESSSS-EEEEEE---------TTSEEEEEETTBCSSCSEEEECSSS-C----EEEEEEEC
T ss_pred cCceEEEEc--CCCCEEEEEecCCC-eEEEEe---------CCCEEEEEECCCCCCceEEeecccc-c----EEEEEEEc
Confidence 0112222 22468889999875 666543 35688888988653 222 222222 2 6666 57
Q ss_pred ecCC-eEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEe
Q 002209 252 VNNS-TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEI 328 (953)
Q Consensus 252 spDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l 328 (953)
+||| +.|+.+. ..+.+.++|+ +++. ..+
T Consensus 319 s~~g~~~laS~S-------------------------------------------------~D~tvklWD~~~~~~~~~~ 349 (524)
T 2j04_B 319 SDFEDTVVSTVA-------------------------------------------------VDGYFYIFNPKDIATTKTT 349 (524)
T ss_dssp CTTSCCEEEEEE-------------------------------------------------TTSEEEEECGGGHHHHCEE
T ss_pred CCCCCeEEEEec-------------------------------------------------cCCeEEEEECCCCCccccc
Confidence 8998 6777551 1235556677 5532 112
Q ss_pred CC--C-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccce
Q 002209 329 GP--P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSI 404 (953)
Q Consensus 329 ~~--~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~ 404 (953)
.. . ..+..++|||||+.++..+.+ +.|.+||+..+. ...+..+. ..+.++
T Consensus 350 ~~~~~~~~v~~v~fsp~~~~l~s~~~d-------------~tv~lwd~~~~~~~~~l~gH~-------------~~V~sv 403 (524)
T 2j04_B 350 VSRFRGSNLVPVVYCPQIYSYIYSDGA-------------SSLRAVPSRAAFAVHPLVSRE-------------TTITAI 403 (524)
T ss_dssp EEECSCCSCCCEEEETTTTEEEEECSS-------------SEEEEEETTCTTCCEEEEECS-------------SCEEEE
T ss_pred ccccccCcccceEeCCCcCeEEEeCCC-------------CcEEEEECcccccceeeecCC-------------CceEEE
Confidence 11 1 246789999999998776633 279999987543 33343322 345789
Q ss_pred eeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee-----cccccCCeeeccCCceEEEEEecccC
Q 002209 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-----LDLRYGGISWCDDSLALVYESWYKTR 479 (953)
Q Consensus 405 ~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~-----~~~~~~~~~~SpDg~~l~~~~~~~~~ 479 (953)
+|||||+.|+-. +..+.+.+|++ ..+....+.. ....+..++|||||+.+.. ++. .
T Consensus 404 a~Sp~g~~l~Sg-------------s~Dgtv~lwd~---~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~~-~ 464 (524)
T 2j04_B 404 GVSRLHPMVLAG-------------SADGSLIITNA---ARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--DSS-Y 464 (524)
T ss_dssp ECCSSCCBCEEE-------------ETTTEEECCBS---CSSTTTCC------CCCCEEEECBCCSSSCEEEE--CCC-C
T ss_pred EeCCCCCeEEEE-------------ECCCEEEEEec---hHhhccccccCccceeeeEEEEeccCCCCCeEEc--cCC-c
Confidence 999999987655 44567888885 2221111110 0112346789999985432 221 1
Q ss_pred ceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCC---EEEEEe
Q 002209 480 RTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGT---YVIAKI 528 (953)
Q Consensus 480 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~---~l~~~~ 528 (953)
.+|..+..+ ............+.. ++|+||+. +++...
T Consensus 465 --~~~~~~~~g---~~~~~l~gh~~~V~~------Vafsp~~~~~~~lAsg~ 505 (524)
T 2j04_B 465 --EVYPLTVND---VSKAKIDAHGINITC------TKWNETSAGGKCYAFSN 505 (524)
T ss_dssp --CCCC----------------CCCSCCC------EEECCSTTTTTEEEEEC
T ss_pred --eecccccCC---cceeeecCCCceEEE------EECCCCCCccHHHHhhc
Confidence 233222222 111112222233343 89999964 887775
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-08 Score=110.37 Aligned_cols=283 Identities=10% Similarity=-0.000 Sum_probs=146.8
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeecccc-CCCCcceEEEEECCCCceeecccCC-Ccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAED-SSSSKLRVWVADVDTGKARPLFQSP-DIY 241 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~-~~~~~~~l~~~d~~~g~~~~lt~~~-~~~ 241 (953)
.|.++|..+ ++ .+..++.+... .+.+||||++|+++....... .+.....|.++|+++++...-...+ ...
T Consensus 48 ~v~v~D~~t----~~--~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~ 120 (373)
T 2mad_H 48 QQWVLDAGS----GS--ILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR 120 (373)
T ss_pred EEEEEECCC----Ce--EEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc
Confidence 467888743 22 12224444444 899999999999875321000 0112456889999887654322212 000
Q ss_pred c--cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEE
Q 002209 242 L--NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (953)
Q Consensus 242 ~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 319 (953)
. ......+.|||||++|+++... ....|+++
T Consensus 121 ~~~g~~p~~~~~spDG~~l~v~n~~-----------------------------------------------~~~~v~vi 153 (373)
T 2mad_H 121 FDVGPYSWMNANTPNNADLLFFQFA-----------------------------------------------AGPAVGLV 153 (373)
T ss_pred cccCCCccceEECCCCCEEEEEecC-----------------------------------------------CCCeEEEE
Confidence 0 0013478999999999987100 11346666
Q ss_pred EcCCcee-E-eCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCC-cccCCccccc
Q 002209 320 SLDGTVK-E-IGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL-AEDIPIAFNS 396 (953)
Q Consensus 320 ~~~g~~~-~-l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~-~~~~p~~~~~ 396 (953)
|.+++.. . +..++. +.+.|+|+..++.... .+.+.+++..++........+. ....|.
T Consensus 154 D~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~------------dg~~~~vd~~g~~~~~~~~~~~~~~~~p~---- 214 (373)
T 2mad_H 154 VQGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCA------------QGGLAKTDHAGGAAGAGLVGAMLTAAQNL---- 214 (373)
T ss_pred ECCCCEEeEEcCCCce---EEEEeCCCceEEEEcC------------CCCEEEEECCCcEEEEEeccccccCCcce----
Confidence 6223322 2 222121 3455666655443311 2255566662222212111000 000111
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec----------ccccC---Ceee
Q 002209 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL----------DLRYG---GISW 463 (953)
Q Consensus 397 ~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~----------~~~~~---~~~~ 463 (953)
...+.+++|+..++|. ...+.++++|. .++..+.+... .+... .+.+
T Consensus 215 ----~~~~~~~~~~~~~~~~-------------~~~~~v~vid~---~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~ 274 (373)
T 2mad_H 215 ----LTQPAQANKSGRIVWP-------------VYSGKILQADI---SAAGATNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred ----eecceeEecCCEEEEE-------------cCCceEEEEec---cCCcceEeeeeeecCCcccccceecCceEeEEE
Confidence 1235678888777666 22447888885 33332222110 11111 2678
Q ss_pred ccCCceEEEEEecc------cCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcE
Q 002209 464 CDDSLALVYESWYK------TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTY 537 (953)
Q Consensus 464 SpDg~~l~~~~~~~------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~ 537 (953)
+|||++|+...... .....|+++|+.++. ....+.-.. ...+ +.|||||++++|..+..
T Consensus 275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~-vv~~i~~g~--~p~~------i~~s~Dg~~~l~v~~~~------ 339 (373)
T 2mad_H 275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ-TSSQISLGH--DVDA------ISVAQDGGPDLYALSAG------ 339 (373)
T ss_pred CCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE-EEEEEECCC--CcCe------EEECCCCCeEEEEEcCC------
Confidence 99999888765321 112479999998852 112222111 1111 88999999777765321
Q ss_pred EEEecCCCCCCCCCCeEEEEECCCCceEEE
Q 002209 538 ILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (953)
Q Consensus 538 ~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l 567 (953)
...|.++|+++++....
T Consensus 340 -------------~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 340 -------------TEVLHIYDAGAGDQDQS 356 (373)
T ss_pred -------------CCeEEEEECCCCCEEee
Confidence 12599999999887655
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.8e-10 Score=119.06 Aligned_cols=209 Identities=15% Similarity=0.124 Sum_probs=120.9
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCC
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (953)
..+|..++.... + .-|.||++||.+.... .| . ... ..++.+|.|+++ +..|
T Consensus 11 ~~~~~~~~~~~~---g-------~g~~~vllHG~~~~~~-----------~w---~-~~~-~~l~~~~~vi~~---Dl~G 61 (291)
T 3qyj_A 11 DTTEARINLVKA---G-------HGAPLLLLHGYPQTHV-----------MW---H-KIA-PLLANNFTVVAT---DLRG 61 (291)
T ss_dssp ECSSCEEEEEEE---C-------CSSEEEEECCTTCCGG-----------GG---T-TTH-HHHTTTSEEEEE---CCTT
T ss_pred ecCCeEEEEEEc---C-------CCCeEEEECCCCCCHH-----------HH---H-HHH-HHHhCCCEEEEE---cCCC
Confidence 347778876543 1 1467889999642211 12 1 112 234578999994 5567
Q ss_pred CCChhhhh-------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC---
Q 002209 726 EGDEEAND-------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN--- 795 (953)
Q Consensus 726 ~G~~~~~~-------~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d--- 795 (953)
+|.+..+. ........|+.+.++.+ + .+++.++||||||.+++.++.++|++++++|++++...
T Consensus 62 ~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~---~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~p~~~~ 135 (291)
T 3qyj_A 62 YGDSSRPASVPHHINYSKRVMAQDQVEVMSKL---G---YEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIAPTHKM 135 (291)
T ss_dssp STTSCCCCCCGGGGGGSHHHHHHHHHHHHHHT---T---CSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCHHHH
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHHHHHHc---C---CCCEEEEEEChHHHHHHHHHHhCchhccEEEEECCCCcchh
Confidence 77764321 12445566666655443 2 35899999999999999999999999999998764210
Q ss_pred --CC--------------CCCcCccc----cc--------------c-hhh--hhH-----------------HHHHhcC
Q 002209 796 --RT--------------LTPFGFQN----ED--------------R-TLW--EAT-----------------STYVEMS 821 (953)
Q Consensus 796 --~~--------------~~~~~~~~----~~--------------~-~~~--~~~-----------------~~~~~~s 821 (953)
.. ..+..... .. . ... +.. ..|....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T 3qyj_A 136 YRTTDQEFATAYYHWFFLIQPDNLPETLIGANPEYYLRKCLEKWGKDFSAFHPQALAEYIRCFSQPAVIHATCEDYRAAA 215 (291)
T ss_dssp HHTCCHHHHHHTTHHHHTTCSTTHHHHHHHTCHHHHHHHHHHHHCSCGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHT
T ss_pred hhcchhhhhHHHHHHHHhccCCCchHHHHcCCHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhcCCCcchhHHHHHHccc
Confidence 00 00000000 00 0 000 000 0011100
Q ss_pred -------cccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 822 -------PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 822 -------p~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
......++++|+|+++|++|..++ ..... +..+.....++..+++ +||.+ ..++.+.+.+.|.+||
T Consensus 216 ~~~~~~~~~~~~~~i~~P~Lvi~G~~D~~~~--~~~~~---~~~~~~~~~~~~~~~~-~GH~~-~~E~P~~v~~~i~~fL 288 (291)
T 3qyj_A 216 TIDLEHDELDMKQKISCPVLVLWGEKGIIGR--KYDVL---ATWRERAIDVSGQSLP-CGHFL-PEEAPEETYQAIYNFL 288 (291)
T ss_dssp THHHHHHHTTTTCCBCSCEEEEEETTSSHHH--HSCHH---HHHHTTBSSEEEEEES-SSSCH-HHHSHHHHHHHHHHHH
T ss_pred ccchhhcchhcCCccccceEEEecccccccc--hhhHH---HHHHhhcCCcceeecc-CCCCc-hhhCHHHHHHHHHHHH
Confidence 011346789999999999996532 11111 2222333456777787 79965 5677888999999998
Q ss_pred HH
Q 002209 895 QK 896 (953)
Q Consensus 895 ~~ 896 (953)
.+
T Consensus 289 ~~ 290 (291)
T 3qyj_A 289 TH 290 (291)
T ss_dssp HC
T ss_pred hc
Confidence 64
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-08 Score=111.60 Aligned_cols=280 Identities=13% Similarity=0.072 Sum_probs=144.2
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccc-cCCCCcceEEEEECCCCceeecccCCCcc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAE-DSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~-~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (953)
+.|+++|..+ ++ .... ++.+... .++|||||++|+........ ..+.....|.++|+++++...-...+...
T Consensus 31 ~~v~v~D~~t-~~--~~~~---i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 31 SRVHVYDYTN-GK--FLGM---VPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp CEEEEEETTT-CC--EEEE---EECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred CeEEEEECCC-Ce--EEEE---ecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence 3678999743 21 1222 3333444 88999999998876532100 01122456899999887654322211000
Q ss_pred c--cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEE
Q 002209 242 L--NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (953)
Q Consensus 242 ~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 319 (953)
. ......++++|||++|+++.. . ....|.++
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~n~--------------------------------------~---------~~~~v~v~ 136 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQNA--------------------------------------S---------PATSIGIV 136 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEEEE--------------------------------------S---------SSEEEEEE
T ss_pred cccCCCcceEEECCCCCEEEEECC--------------------------------------C---------CCCeEEEE
Confidence 0 001457899999999997610 0 12467788
Q ss_pred Ec-CCcee-E-eCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ceEE-EeccCCCcccCCccc
Q 002209 320 SL-DGTVK-E-IGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVR-ELCDLPLAEDIPIAF 394 (953)
Q Consensus 320 ~~-~g~~~-~-l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~-~l~~~~~~~~~p~~~ 394 (953)
|+ +++.. . +..++ ...+.+.|+|+..+++... .+.+..++.+. +... .........
T Consensus 137 d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~~~~------------dg~~~~v~~~~~g~~~~~~~~~~~~~------ 197 (361)
T 2oiz_A 137 DVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMTICG------------DGGLLTINLGEDGKVASQSRSKQMFS------ 197 (361)
T ss_dssp ETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEEEET------------TSSEEEEEECTTSSEEEEEECCCCSC------
T ss_pred ECCCCcEEEEEecCCC-cceeEEcCCCCeeEEEECC------------CCcEEEEEECCCCcEeeeccccceEc------
Confidence 88 66433 2 22211 1113455665433332211 12444444432 2211 111000000
Q ss_pred cccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec-------------ccccCCe
Q 002209 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-------------DLRYGGI 461 (953)
Q Consensus 395 ~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~-------------~~~~~~~ 461 (953)
...+...+.+++||+.+++. ...+.++++|+ .++....+... ......+
T Consensus 198 --~~~~~~~~~~~~~g~~~~~~-------------~~~~~v~v~d~---~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~ 259 (361)
T 2oiz_A 198 --VKDDPIFIAPALDKDKAHFV-------------SYYGNVYSADF---SGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV 259 (361)
T ss_dssp --TTTSCBCSCCEECSSEEEEE-------------BTTSEEEEEEC---SSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred --CCCCceEEEecccCCEEEEE-------------eCCCeEEEEEe---cCCCceecccccccCccccccccccCCeeEE
Confidence 00112234567888776665 33457888885 33333322110 0111237
Q ss_pred eeccCCceEEEEEeccc-------CceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCC
Q 002209 462 SWCDDSLALVYESWYKT-------RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDE 534 (953)
Q Consensus 462 ~~SpDg~~l~~~~~~~~-------~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~ 534 (953)
+++|||++++.....+. ....++++|+.++ +......... ..+ +.|||||++|+....
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--~~v~~i~~~~--p~~------ia~spdg~~l~v~n~----- 324 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--QRVARIPGRD--ALS------MTIDQQRNLMLTLDG----- 324 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--EEEEEEECTT--CCE------EEEETTTTEEEEECS-----
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--cEEEEEecCC--eeE------EEECCCCCEEEEeCC-----
Confidence 89999998876643111 1237999999885 2222111111 222 889999997764321
Q ss_pred CcEEEEecCCCCCCCCCCeEEEEECCCCceE
Q 002209 535 GTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (953)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~ 565 (953)
..|.+||.++++++
T Consensus 325 -----------------~~v~v~D~~t~~l~ 338 (361)
T 2oiz_A 325 -----------------GNVNVYDISQPEPK 338 (361)
T ss_dssp -----------------SCEEEEECSSSSCE
T ss_pred -----------------CeEEEEECCCCcce
Confidence 24999999999333
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-10 Score=124.69 Aligned_cols=196 Identities=15% Similarity=0.135 Sum_probs=116.4
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEEcCCCCCCCCCChhhh---hhhHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEA 745 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~ 745 (953)
.|.||++||+.... ..| ......|++ .+|.|++ .|.+|+|.+... .......++|+.+
T Consensus 38 ~p~lvllHG~~~~~-----------~~w----~~~~~~L~~~~~~~via---~Dl~GhG~S~~~~~~~~~~~~~a~dl~~ 99 (316)
T 3c5v_A 38 GPVLLLLHGGGHSA-----------LSW----AVFTAAIISRVQCRIVA---LDLRSHGETKVKNPEDLSAETMAKDVGN 99 (316)
T ss_dssp SCEEEEECCTTCCG-----------GGG----HHHHHHHHTTBCCEEEE---ECCTTSTTCBCSCTTCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCccc-----------ccH----HHHHHHHhhcCCeEEEE---ecCCCCCCCCCCCccccCHHHHHHHHHH
Confidence 47899999963211 011 123344544 2899999 555788887542 1236778899999
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh--CCCcccEEEEcccCCCCC------------CCCcCcccc-----
Q 002209 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAYNRT------------LTPFGFQNE----- 806 (953)
Q Consensus 746 ~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~d~~------------~~~~~~~~~----- 806 (953)
.++.+... + .+++.|+||||||.+|+.+|.+ +|+ ++++|++++..... ..+..+...
T Consensus 100 ~l~~l~~~--~-~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (316)
T 3c5v_A 100 VVEAMYGD--L-PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFKSLENAIE 175 (316)
T ss_dssp HHHHHHTT--C-CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESCCHHHHHHHHHHHHHHHHHSCSCBSSHHHHHH
T ss_pred HHHHHhcc--C-CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEcccccchhhhHHHHHHHHhhCccccccHHHHHH
Confidence 98887421 1 2589999999999999999995 566 88888876421000 000000000
Q ss_pred -------cchhhhh----HHHHHh-------------------cCc--------------ccccCCCCCcEEEEEeCCCC
Q 002209 807 -------DRTLWEA----TSTYVE-------------------MSP--------------FMSANKLKKPILLVHGEEDN 842 (953)
Q Consensus 807 -------~~~~~~~----~~~~~~-------------------~sp--------------~~~~~~i~~P~Li~~G~~D~ 842 (953)
....... +..+.. ... ...+.++++|+|+++|+.|.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lli~g~~D~ 255 (316)
T 3c5v_A 176 WSVKSGQIRNLESARVSMVGQVKQCEGITSPEGSKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDR 255 (316)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHEEECC------------CEEESCCGGGGHHHHHHHHTTHHHHHHHSSSCEEEEESSCCC
T ss_pred HhhhcccccchhhhhhhhhHHhhhccccccccccccccceeeeecccchhhhhhhhhhhhHHHhhcCCCCEEEEEecccc
Confidence 0000000 000000 000 00112578999999999997
Q ss_pred CCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 843 NSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 843 ~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
..+ .... ..+. ...+++++|++||... .+..+.+.+.+.+||.+.
T Consensus 256 ~~~--~~~~----~~~~---~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 300 (316)
T 3c5v_A 256 LDK--DLTI----GQMQ---GKFQMQVLPQCGHAVH-EDAPDKVAEAVATFLIRH 300 (316)
T ss_dssp CCH--HHHH----HHHT---TCSEEEECCCCSSCHH-HHSHHHHHHHHHHHHHHT
T ss_pred ccc--HHHH----HhhC---CceeEEEcCCCCCccc-ccCHHHHHHHHHHHHHhc
Confidence 643 2211 1222 2358999999999863 566778889999999764
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-08 Score=110.28 Aligned_cols=282 Identities=12% Similarity=0.112 Sum_probs=163.1
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
+.+...||||+ .||... +..|+++|+++|+..++..... ....+..++|+|||+.|+...
T Consensus 27 y~~~l~WS~~~-~lAvg~----------D~tV~iWd~~tg~~~~~~~~~~--~~~~V~~v~~~~~~~~l~sgs------- 86 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL----------DNSVYLWSASSGDILQLLQMEQ--PGEYISSVAWIKEGNYLAVGT------- 86 (318)
T ss_dssp TCBCEEECTTS-EEEEEE----------TTEEEEEETTTCCEEEEEECCS--TTCCEEEEEECTTSSEEEEEE-------
T ss_pred cceEEEECCCC-EEEEEe----------CCEEEEEECCCCCEEEEEEecC--CCCeEEEEEECCCCCEEEEEE-------
Confidence 34568999987 666532 4579999999998766543222 111267899999999998661
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCcccccccCCCCcEEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~~ 348 (953)
..+.|.++++ +++..............++++++.++.
T Consensus 87 ------------------------------------------~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s 124 (318)
T 4ggc_A 87 ------------------------------------------SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSS 124 (318)
T ss_dssp ------------------------------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred ------------------------------------------CCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEE
Confidence 2245667788 675433322212223456778888777
Q ss_pred EEecCCccccccCCCCCcceEEEeccCce--EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~--~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (953)
.+.+ +.+.+|+..... ...+..+. .......|+++|+.++..
T Consensus 125 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~s~---------- 168 (318)
T 4ggc_A 125 GSRS-------------GHIHHHDVRVAEHHVATLSGHS-------------QEVCGLRWAPDGRHLASG---------- 168 (318)
T ss_dssp EETT-------------SEEEEEETTSSSCEEEEEECCS-------------SCEEEEEECTTSSEEEEE----------
T ss_pred EecC-------------CceEeeecCCCceeEEEEcCcc-------------CceEEEEEcCCCCEEEEE----------
Confidence 6633 266677665332 22222221 233567899999876554
Q ss_pred cccccCCeEEEEecCCCCCCC----ceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCC
Q 002209 427 VEVTPRDIIYTQQAEPVQGEG----PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (953)
Q Consensus 427 ~~~~~~~~l~~~d~~~~~g~~----~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 502 (953)
+..+.+.+||+ .++.. ..........+..+.|+|++..++........ ..+.+.+.... ....... .
T Consensus 169 ---~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~i~lwd~~~~--~~~~~~~-~ 239 (318)
T 4ggc_A 169 ---GNDNLVNVWPS--APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD-RHIRIWNVCSG--ACLSAVD-A 239 (318)
T ss_dssp ---ETTSCEEEEES--SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT-CEEEEEETTTC--CEEEEEE-C
T ss_pred ---ecCcceeEEEC--CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC-CEEEEEecccc--ccccccc-c
Confidence 34567888986 22221 12223334556678899998877654432221 24555565553 2222221 1
Q ss_pred CccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEee
Q 002209 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVAL 582 (953)
Q Consensus 503 ~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 582 (953)
...+.. ..|+|+++.++...... ...|++||+.+++......+... .+..
T Consensus 240 ~~~v~~------~~~~~~~~~~~~~sg~~-------------------d~~i~iwd~~~~~~~~~l~gH~~----~V~~- 289 (318)
T 4ggc_A 240 HSQVCS------ILWSPHYKELISGHGFA-------------------QNQLVIWKYPTMAKVAELKGHTS----RVLS- 289 (318)
T ss_dssp SSCEEE------EEEETTTTEEEEEECTT-------------------TCCEEEEETTTCCEEEEECCCSS----CEEE-
T ss_pred eeeeee------eeecccccceEEEEEcC-------------------CCEEEEEECCCCcEEEEEcCCCC----CEEE-
Confidence 111221 67899998887654211 12499999998877655443221 1222
Q ss_pred ccCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002209 583 MSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (953)
Q Consensus 583 ~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 618 (953)
.+|+|||+.|+- .+.. ..|.+|++..
T Consensus 290 ------l~~spdg~~l~S-~s~D---~~v~iWd~~~ 315 (318)
T 4ggc_A 290 ------LTMSPDGATVAS-AAAD---ETLRLWRCFE 315 (318)
T ss_dssp ------EEECTTSSCEEE-EETT---TEEEEECCSC
T ss_pred ------EEEcCCCCEEEE-EecC---CeEEEEECCC
Confidence 368999987663 3322 3577877644
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-09 Score=119.79 Aligned_cols=266 Identities=11% Similarity=0.070 Sum_probs=150.4
Q ss_pred CcccceEeccC---CCeEEEEEeeccccCCCCcceEEEEECCC-Ccee--ecccCCCccccccccceEEecCCeEEEEEe
Q 002209 189 AKLNFVTWSQD---GKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKAR--PLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (953)
Q Consensus 189 ~~~~~~~wSPD---G~~laf~~~~~~~~~~~~~~~l~~~d~~~-g~~~--~lt~~~~~~~~~~~~~~~wspDg~~l~~~~ 262 (953)
..+...+|+|| |+.|+... ....|.++++++ +... .+..+.. . +..++|+|||+.|+...
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~h~~-~----v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGS---------WANDVRCWEVQDSGQTIPKAQQMHTG-P----VLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEE---------TTSEEEEEEECTTSCEEEEEEEECSS-C----EEEEEECTTSSEEEEEE
T ss_pred CceEEEEEcCCCCCceEEEEEC---------CCCcEEEEEcCCCCceeEEEeccccC-C----EEEEEECcCCCEEEEEc
Confidence 47899999999 58877754 245677777775 4432 2322222 2 77899999999998661
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-Cccccccc-
Q 002209 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDP- 339 (953)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~- 339 (953)
..+.|.++++ +++...+... ..+..+.|
T Consensus 106 -------------------------------------------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~ 136 (368)
T 3mmy_A 106 -------------------------------------------------CDKTAKMWDLSSNQAIQIAQHDAPVKTIHWI 136 (368)
T ss_dssp -------------------------------------------------TTSEEEEEETTTTEEEEEEECSSCEEEEEEE
T ss_pred -------------------------------------------------CCCcEEEEEcCCCCceeeccccCceEEEEEE
Confidence 2246778888 7766555444 77888999
Q ss_pred -CCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEE
Q 002209 340 -SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (953)
Q Consensus 340 -SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~ 417 (953)
+|||+.|+..+.+. .|.+||+..+.. ..+.... ....+.+. +..++..
T Consensus 137 ~~~~~~~l~~~~~dg-------------~i~vwd~~~~~~~~~~~~~~--------------~~~~~~~~--~~~~~~~- 186 (368)
T 3mmy_A 137 KAPNYSCVMTGSWDK-------------TLKFWDTRSSNPMMVLQLPE--------------RCYCADVI--YPMAVVA- 186 (368)
T ss_dssp ECSSCEEEEEEETTS-------------EEEEECSSCSSCSEEEECSS--------------CEEEEEEE--TTEEEEE-
T ss_pred eCCCCCEEEEccCCC-------------cEEEEECCCCcEEEEEecCC--------------CceEEEec--CCeeEEE-
Confidence 99999998887443 899999975432 2222211 11123333 3333332
Q ss_pred EeccCCCcccccccCCeEEEEecCCCCCCCceE--Eee-cccccCCeeeccCCce----EEEEEecccCceEEEEEcCCC
Q 002209 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI--LHK-LDLRYGGISWCDDSLA----LVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~--l~~-~~~~~~~~~~SpDg~~----l~~~~~~~~~~~~l~~~d~~~ 490 (953)
...+.+.++++ ....... +.. .......+.+.+++.. ++....++ .+.+++...
T Consensus 187 ------------~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg----~i~i~~~~~ 247 (368)
T 3mmy_A 187 ------------TAERGLIVYQL---ENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG----RVAIHYINP 247 (368)
T ss_dssp ------------EGGGCEEEEEC---SSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS----EEEEEESSC
T ss_pred ------------eCCCcEEEEEe---ccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCC----cEEEEecCC
Confidence 23446777775 2222111 111 1122233444444433 55554332 344444444
Q ss_pred CCC-CcEEeecCCCc------------cccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEE
Q 002209 491 KDV-APRILFDRSSE------------DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLF 557 (953)
Q Consensus 491 ~~~-~~~~~~~~~~~------------~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 557 (953)
... ........... .+.. +.|+|||++|+....+. .|++|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~sp~~~~l~s~~~dg---------------------~i~iw 300 (368)
T 3mmy_A 248 PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNG------IAFHPVHGTLATVGSDG---------------------RFSFW 300 (368)
T ss_dssp SCHHHHSEEEECSEEC----CCCEEECCEEE------EEECTTTCCEEEEETTS---------------------CEEEE
T ss_pred CCccccceeeeeeecccccccccccccceEE------EEEecCCCEEEEEccCC---------------------eEEEE
Confidence 211 11111111111 1222 78999999988776322 39999
Q ss_pred ECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEec
Q 002209 558 DINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKES 604 (953)
Q Consensus 558 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 604 (953)
|+.+++.......... .+. ..+|+|||+.++.....
T Consensus 301 d~~~~~~~~~~~~~~~----~v~-------~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 301 DKDARTKLKTSEQLDQ----PIS-------ACCFNHNGNIFAYASSY 336 (368)
T ss_dssp ETTTTEEEEECCCCSS----CEE-------EEEECTTSSCEEEEECC
T ss_pred ECCCCcEEEEecCCCC----Cce-------EEEECCCCCeEEEEecc
Confidence 9998876554443221 112 24789999987776554
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.2e-10 Score=121.62 Aligned_cols=174 Identities=14% Similarity=0.036 Sum_probs=109.5
Q ss_pred HcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCcccE
Q 002209 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFCC 786 (953)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~---p~~~~a 786 (953)
+.||.|+.+ +..|+|.+..........+.|+.+.++.+.. ..++.|+||||||.++..++.+. |+.+++
T Consensus 107 ~~~~~v~~~---d~~G~G~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~ 178 (319)
T 3lcr_A 107 DAGRRVSAL---VPPGFHGGQALPATLTVLVRSLADVVQAEVA-----DGEFALAGHSSGGVVAYEVARELEARGLAPRG 178 (319)
T ss_dssp CTTSEEEEE---ECTTSSTTCCEESSHHHHHHHHHHHHHHHHT-----TSCEEEEEETHHHHHHHHHHHHHHHTTCCCSC
T ss_pred CCCceEEEe---eCCCCCCCCCCCCCHHHHHHHHHHHHHHhcC-----CCCEEEEEECHHHHHHHHHHHHHHhcCCCccE
Confidence 789999994 4467776544434456666776666655432 25899999999999999999887 788999
Q ss_pred EEEcccCCCCCCC-Cc-Cccc-ccchhh----------------hhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCc
Q 002209 787 GIARSGAYNRTLT-PF-GFQN-EDRTLW----------------EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTL 847 (953)
Q Consensus 787 ~v~~~~~~d~~~~-~~-~~~~-~~~~~~----------------~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~ 847 (953)
+|++++....... .. .+.. ...... .....+...-.......+++|+|+++|++ ..++
T Consensus 179 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~PvLli~g~~-~~~~-- 255 (319)
T 3lcr_A 179 VVLIDSYSFDGDGGRPEELFRSALNERFVEYLRLTGGGNLSQRITAQVWCLELLRGWRPEGLTAPTLYVRPAQ-PLVE-- 255 (319)
T ss_dssp EEEESCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTTTCCCCCCSSCEEEEEESS-CSSS--
T ss_pred EEEECCCCCCccchhhHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHhcCCCCCcCCCEEEEEeCC-CCCC--
Confidence 9988765322110 00 0000 000000 00001111111112257889999999998 4555
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc-ccHHHHHHHHHHHHHHhc
Q 002209 848 TMQSDRFFNALKGHGALCRLVILPFESHGYAAR-ESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 848 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~-~~~~~~~~~i~~fl~~~l 898 (953)
+.....+.+.+... .+++++++ +|..... +....+.+.|.+||.+..
T Consensus 256 ~~~~~~~~~~~~~~---~~~~~~~g-~H~~~~~~~~~~~va~~i~~fL~~~~ 303 (319)
T 3lcr_A 256 QEKPEWRGDVLAAM---GQVVEAPG-DHFTIIEGEHVASTAHIVGDWLREAH 303 (319)
T ss_dssp CCCTHHHHHHHHTC---SEEEEESS-CTTGGGSTTTHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhcCCCC---ceEEEeCC-CcHHhhCcccHHHHHHHHHHHHHhcc
Confidence 56667777766543 57888887 6654333 578899999999999864
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-08 Score=117.96 Aligned_cols=298 Identities=13% Similarity=0.031 Sum_probs=156.0
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEec----cCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCC
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWS----QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD 239 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wS----PDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 239 (953)
.|.++|+.. .+.....++ +.+.......+| |||++++.... ....+.++|..+.+..+......
T Consensus 219 ~V~viD~~~-~t~~~v~~i---~~G~~P~~ia~s~~~~pDGk~l~v~n~--------~~~~v~ViD~~t~~~~~~i~~~~ 286 (567)
T 1qks_A 219 KVNMIDLWM-KEPTTVAEI---KIGSEARSIETSKMEGWEDKYAIAGAY--------WPPQYVIMDGETLEPKKIQSTRG 286 (567)
T ss_dssp EEEEEETTS-SSCCEEEEE---ECCSEEEEEEECCSTTCTTTEEEEEEE--------ETTEEEEEETTTCCEEEEEECCE
T ss_pred eEEEEECCC-CCCcEeEEE---ecCCCCceeEEccccCCCCCEEEEEEc--------cCCeEEEEECCCCcEEEEEeccc
Confidence 578888731 111222233 334456788999 79999887654 24678888988877655432211
Q ss_pred ccc-------cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhc
Q 002209 240 IYL-------NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYA 312 (953)
Q Consensus 240 ~~~-------~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 312 (953)
... ...+..+..|+++..+++.. ..
T Consensus 287 ~~~~~~~~~p~~rva~i~~s~~~~~~vv~~------------------------------------------------~~ 318 (567)
T 1qks_A 287 MTYDEQEYHPEPRVAAILASHYRPEFIVNV------------------------------------------------KE 318 (567)
T ss_dssp ECTTTCCEESCCCEEEEEECSSSSEEEEEE------------------------------------------------TT
T ss_pred cccccccccCCCceEEEEEcCCCCEEEEEe------------------------------------------------cC
Confidence 000 00133455666666555441 03
Q ss_pred cceEEEEEc-CCc---eeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcc
Q 002209 313 TTQLVLVSL-DGT---VKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE 388 (953)
Q Consensus 313 ~~~l~~~~~-~g~---~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~ 388 (953)
.++|+++|. +.+ ...+..........|+|||++++.+... .+.|.++|+.+++.........
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~------------sn~V~ViD~~t~kl~~~i~vgg-- 384 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA------------RNKLVVIDTKEGKLVAIEDTGG-- 384 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG------------GTEEEEEETTTTEEEEEEECSS--
T ss_pred CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC------------CCeEEEEECCCCcEEEEEeccC--
Confidence 467888887 432 2233222344567899999999887743 2379999998766543322100
Q ss_pred cCCccccccccCccceee-ccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCC----CCc-eEEeecccccCCee
Q 002209 389 DIPIAFNSVRKGMRSINW-RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG----EGP-EILHKLDLRYGGIS 462 (953)
Q Consensus 389 ~~p~~~~~~~~~~~~~~w-spDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g----~~~-~~l~~~~~~~~~~~ 462 (953)
..|. .+ +.+.| +||+..+++. .. -+.+.|.+++.++... -+. +.+.........+.
T Consensus 385 ~~Ph------pg-~g~~~~~p~~g~v~~t-~~----------~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~ 446 (567)
T 1qks_A 385 QTPH------PG-RGANFVHPTFGPVWAT-SH----------MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIK 446 (567)
T ss_dssp SSBC------CT-TCEEEEETTTEEEEEE-EB----------SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE
T ss_pred cCCC------Cc-cceeeECCCCCcEEEe-CC----------CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEE
Confidence 1111 00 23444 7886655333 11 1235788888622110 111 22222111123367
Q ss_pred eccCCceEEEEEeccc---CceEEEEEcCCCC-----CCCcEEeecCCCcccc-CCCCCCCeEeccCCCEEEEEeeeccC
Q 002209 463 WCDDSLALVYESWYKT---RRTRTWVISPGSK-----DVAPRILFDRSSEDVY-SDPGSPMMRRTSTGTYVIAKIKKEND 533 (953)
Q Consensus 463 ~SpDg~~l~~~~~~~~---~~~~l~~~d~~~~-----~~~~~~~~~~~~~~~~-~~~~~p~~~~SpDG~~l~~~~~~~~~ 533 (953)
.+|||++|+.....+. ....+.++|.++. ......+.-.....+- +...-..+.|+|||+++++......
T Consensus 447 ~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~- 525 (567)
T 1qks_A 447 THPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGK- 525 (567)
T ss_dssp CCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCT-
T ss_pred eCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCC-
Confidence 8999999887642111 1236777877653 1111222110000000 0000011679999999998864210
Q ss_pred CCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEec
Q 002209 534 EGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~ 569 (953)
.....|.++|.++++......
T Consensus 526 ---------------~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 526 ---------------DQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp ---------------TSCCEEEEEETTTTEEEEEEC
T ss_pred ---------------CCCCcEEEEECCCceEEEEeC
Confidence 012348899999988765544
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-09 Score=122.89 Aligned_cols=242 Identities=11% Similarity=0.217 Sum_probs=144.0
Q ss_pred CCCCCCceecCCC-CEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCC-------CCCCce
Q 002209 108 APPLPALSFSPQR-DKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPD-------GKLGQE 179 (953)
Q Consensus 108 ~~~~~~~~~SPDG-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-------g~~~~~ 179 (953)
...+..++|+|++ +.||....+ +.|.||++... +.....
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~d---------------------------------g~V~vwd~~~~~~~~~~~~~~~~~ 174 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPS---------------------------------SDVLVFDYTKHPSKPEPSGECQPD 174 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSS---------------------------------SCEEEEEGGGSCSSCCTTCCCCCS
T ss_pred CCcEEEEEECCCCCcEEEEECCC---------------------------------CcEEEEECCCcccccCccccCCCc
Confidence 4468889999984 555554433 36789998541 111223
Q ss_pred eeeecCCCCCcccceEeccCCC-eEEEEEeeccccCCCCcceEEEEECCCCce--------eecccCCCccccccccceE
Q 002209 180 IEIQGFPDGAKLNFVTWSQDGK-HLAFSIRIDAEDSSSSKLRVWVADVDTGKA--------RPLFQSPDIYLNAIFDNFV 250 (953)
Q Consensus 180 ~~l~~~~~~~~~~~~~wSPDG~-~laf~~~~~~~~~~~~~~~l~~~d~~~g~~--------~~lt~~~~~~~~~~~~~~~ 250 (953)
..+.. +...+....|+|+++ .|+... ....|.++++..+.. ..+..+. ..+..++
T Consensus 175 ~~~~~--h~~~v~~l~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~-----~~v~~v~ 238 (430)
T 2xyi_A 175 LRLRG--HQKEGYGLSWNPNLNGYLLSAS---------DDHTICLWDINATPKEHRVIDAKNIFTGHT-----AVVEDVA 238 (430)
T ss_dssp EEEEC--CSSCCCCEEECTTSTTEEEEEC---------TTSCEEEEETTSCCBGGGEEECSEEECCCS-----SCEEEEE
T ss_pred EEecC--CCCCeEEEEeCCCCCCeEEEEe---------CCCeEEEEeCCCCCCCCceeccceeecCCC-----CCEeeeE
Confidence 33333 234689999999999 555532 355788888876321 1121211 2277899
Q ss_pred EecC-CeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC----c
Q 002209 251 WVNN-STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG----T 324 (953)
Q Consensus 251 wspD-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g----~ 324 (953)
|+|+ +..|+... ..+.|.++|+ ++ .
T Consensus 239 ~~p~~~~~l~s~~-------------------------------------------------~dg~i~i~d~~~~~~~~~ 269 (430)
T 2xyi_A 239 WHLLHESLFGSVA-------------------------------------------------DDQKLMIWDTRNNNTSKP 269 (430)
T ss_dssp ECSSCTTEEEEEE-------------------------------------------------TTSEEEEEETTCSCSSSC
T ss_pred EeCCCCCEEEEEe-------------------------------------------------CCCeEEEEECCCCCCCcc
Confidence 9995 55555441 2356778888 54 2
Q ss_pred eeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ce-EEEeccCCCcccCCccccccccCc
Q 002209 325 VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IF-VRELCDLPLAEDIPIAFNSVRKGM 401 (953)
Q Consensus 325 ~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~-~~~l~~~~~~~~~p~~~~~~~~~~ 401 (953)
...+... ..+..++|+|+|++++++... .+.|.+||+.. +. ...+..+ ...+
T Consensus 270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~------------dg~v~vwd~~~~~~~~~~~~~h-------------~~~v 324 (430)
T 2xyi_A 270 SHTVDAHTAEVNCLSFNPYSEFILATGSA------------DKTVALWDLRNLKLKLHSFESH-------------KDEI 324 (430)
T ss_dssp SEEEECCSSCEEEEEECSSCTTEEEEEET------------TSEEEEEETTCTTSCSEEEECC-------------SSCE
T ss_pred eeEeecCCCCeEEEEeCCCCCCEEEEEeC------------CCeEEEEeCCCCCCCeEEeecC-------------CCCE
Confidence 3333333 678899999999976555422 24899999974 22 2333222 1345
Q ss_pred cceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC-----------ceEE---eecccccCCeeeccCC
Q 002209 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-----------PEIL---HKLDLRYGGISWCDDS 467 (953)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~-----------~~~l---~~~~~~~~~~~~SpDg 467 (953)
..++|+|+|+.+++.. +..+.|.+|++ ...+. ...+ ..+...+..+.|+|++
T Consensus 325 ~~i~~sp~~~~~l~s~------------~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 390 (430)
T 2xyi_A 325 FQVQWSPHNETILASS------------GTDRRLHVWDL--SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390 (430)
T ss_dssp EEEEECSSCTTEEEEE------------ETTSCCEEEEG--GGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSS
T ss_pred EEEEECCCCCCEEEEE------------eCCCcEEEEeC--CCCccccCccccccCCcceEEEcCCCCCCceEEEECCCC
Confidence 6899999998765541 23457888886 11111 1222 2334557789999999
Q ss_pred ceEEEEEecccCceEEEEEc
Q 002209 468 LALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d 487 (953)
++++++...+ +..++|.++
T Consensus 391 ~~~l~s~s~d-g~i~iw~~~ 409 (430)
T 2xyi_A 391 PWIICSVSED-NIMQVWQMA 409 (430)
T ss_dssp TTEEEEEETT-SEEEEEEEC
T ss_pred CCEEEEEECC-CCEEEeEcc
Confidence 9555544433 223566654
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=124.77 Aligned_cols=200 Identities=20% Similarity=0.116 Sum_probs=114.1
Q ss_pred CccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHH
Q 002209 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (953)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~ 748 (953)
..|.||++||..... ++..| ...... ...+|.|+. ++..|+|.+..........+.|+.+.
T Consensus 66 ~~~~lvllhG~~~~~---------~~~~~----~~~~~~-l~~~~~v~~---~d~~G~G~s~~~~~~~~~~a~~~~~~-- 126 (300)
T 1kez_A 66 GEVTVICCAGTAAIS---------GPHEF----TRLAGA-LRGIAPVRA---VPQPGYEEGEPLPSSMAAVAAVQADA-- 126 (300)
T ss_dssp CSSEEEECCCSSTTC---------STTTT----HHHHHH-TSSSCCBCC---CCCTTSSTTCCBCSSHHHHHHHHHHH--
T ss_pred CCCeEEEECCCcccC---------cHHHH----HHHHHh-cCCCceEEE---ecCCCCCCCCCCCCCHHHHHHHHHHH--
Confidence 368899999953210 00111 112222 345799998 55567777644333345555555433
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC---CcccEEEEcccCCCCCCCC----------cCcccc----cchhh
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGAYNRTLTP----------FGFQNE----DRTLW 811 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~~d~~~~~----------~~~~~~----~~~~~ 811 (953)
+.+. .+..++.|+||||||.+++.++.++| ++++++|++++........ ..+... .....
T Consensus 127 -l~~~--~~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (300)
T 1kez_A 127 -VIRT--QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAMNAWLEELTATLFDRETVRMDDTRL 203 (300)
T ss_dssp -HHHH--CSSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCCTTTCHHHHHHHHHHHGGGCCCCSSCCCHHHH
T ss_pred -HHHh--cCCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCCCcchhHHHHHHHHHHHHHHhCcCCccchHHH
Confidence 3322 23468999999999999999999987 4899999988754321100 000000 00000
Q ss_pred hhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHH
Q 002209 812 EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETD 891 (953)
Q Consensus 812 ~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 891 (953)
.....+...-......++++|+|+++|+ |..++ +.. ..+.+ .....++++++++ +|.....+....+.+.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~i~~P~lii~G~-d~~~~--~~~-~~~~~---~~~~~~~~~~i~g-gH~~~~~e~~~~~~~~i~ 275 (300)
T 1kez_A 204 TALGAYDRLTGQWRPRETGLPTLLVSAG-EPMGP--WPD-DSWKP---TWPFEHDTVAVPG-DHFTMVQEHADAIARHID 275 (300)
T ss_dssp HHHHHHHHHTTTCCCCCCSCCBEEEEES-SCSSC--CCS-SCCSC---CCSSCCEEEEESS-CTTTSSSSCSHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCCEEEEEeC-CCCCC--Ccc-cchhh---hcCCCCeEEEecC-CChhhccccHHHHHHHHH
Confidence 0111121111111246789999999995 66665 433 22211 1122468999999 998753366677888888
Q ss_pred HHHHHhc
Q 002209 892 RWLQKYC 898 (953)
Q Consensus 892 ~fl~~~l 898 (953)
+||.+..
T Consensus 276 ~fl~~~~ 282 (300)
T 1kez_A 276 AWLGGGN 282 (300)
T ss_dssp HHHTCC-
T ss_pred HHHHhcc
Confidence 8887643
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-09 Score=113.10 Aligned_cols=252 Identities=11% Similarity=0.038 Sum_probs=149.8
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
...+.|+|||+.|+++... . +.|++|+..+ + .+.+.. + ...
T Consensus 30 ~eg~~~d~~g~~l~~~~~~--------------------------~------~~i~~~~~~~----~-~~~~~~-~-~~~ 70 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVR--------------------------Q------NRTWAWSDDG----Q-LSPEMH-P-SHH 70 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGG--------------------------G------TEEEEEETTS----C-EEEEES-S-CSS
T ss_pred ccCCeEeCCCCEEEEEeCC--------------------------C------CEEEEEECCC----C-eEEEEC-C-CCC
Confidence 3478999999977776652 0 2578888732 3 334432 2 235
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
+..+.++|||+.++.. .+...|++++.++|+.+.+...........+..++++|||++++.. ......
T Consensus 71 ~~~l~~~~dg~l~v~~---------~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd-~~~g~~-- 138 (296)
T 3e5z_A 71 QNGHCLNKQGHLIACS---------HGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSD-PTYGID-- 138 (296)
T ss_dssp EEEEEECTTCCEEEEE---------TTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEE-CSHHHH--
T ss_pred cceeeECCCCcEEEEe---------cCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEEC-Cccccc--
Confidence 6778999999854442 1246899999988877665432111101114578899999855432 000000
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccCCCCcEEEEE
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILIS 349 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDG~~l~~~ 349 (953)
. . ........+ .....||+++.+|+.+.+... .....++|||||+.| ++
T Consensus 139 --------------~--------~-~~~~~~~~~------~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~l-v~ 188 (296)
T 3e5z_A 139 --------------K--------P-EEGYGGEME------LPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLL-VS 188 (296)
T ss_dssp --------------C--------G-GGSSCCCCC------SSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEE-EE
T ss_pred --------------c--------c-ccccccccc------CCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEE-EE
Confidence 0 0 000000000 023578888877766666554 556789999999998 55
Q ss_pred EecCCccccccCCCCCcceEEEecc-CceE---EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 350 SIHRPYSFIVPCGRFPRQVGVWTTD-GIFV---RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~---~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
... ...|++|+++ .+.. ..+... . ...+..+++++||+ |+..
T Consensus 189 ~~~------------~~~i~~~~~~~~g~~~~~~~~~~~--~----------~~~p~~i~~d~~G~-l~v~--------- 234 (296)
T 3e5z_A 189 DTG------------DNATHRYCLNARGETEYQGVHFTV--E----------PGKTDGLRVDAGGL-IWAS--------- 234 (296)
T ss_dssp ETT------------TTEEEEEEECSSSCEEEEEEEECC--S----------SSCCCSEEEBTTSC-EEEE---------
T ss_pred eCC------------CCeEEEEEECCCCcCcCCCeEeeC--C----------CCCCCeEEECCCCC-EEEE---------
Confidence 422 2489999986 3333 222111 1 12345789999996 3333
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccccCCeee-ccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW-CDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~-SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
. .+.|++++. +|.....+..... ...++| +||++.|+.+... .||.+++.+.
T Consensus 235 ----~-~~~v~~~~~---~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-----~l~~~~~~~~ 287 (296)
T 3e5z_A 235 ----A-GDGVHVLTP---DGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-----EFWSIETNVR 287 (296)
T ss_dssp ----E-TTEEEEECT---TSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-----EEEEEECSCC
T ss_pred ----c-CCeEEEECC---CCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-----eEEEEEcccc
Confidence 1 357889984 5544444554444 777889 5899998887532 6999998774
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-08 Score=115.74 Aligned_cols=197 Identities=10% Similarity=0.047 Sum_probs=119.1
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC----------Cce-eecccCCCccccccccceEEecCCe-
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT----------GKA-RPLFQSPDIYLNAIFDNFVWVNNST- 256 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~----------g~~-~~lt~~~~~~~~~~~~~~~wspDg~- 256 (953)
..+...+|+|++..++++.. ....|+++++.. .+. ..+..+.. .+..++|+|+++
T Consensus 129 ~~v~~l~~~p~~~~~lat~~--------~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~ 195 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKT--------PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-----EGYGLSWNPNLNG 195 (430)
T ss_dssp SCCSEEEEETTEEEEEEEEC--------SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-----CCCCEEECTTSTT
T ss_pred CcEEEEEECCCCCcEEEEEC--------CCCcEEEEECCCcccccCccccCCCcEEecCCCC-----CeEEEEeCCCCCC
Confidence 46899999998555555432 244677777764 121 22222222 266899999998
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-c-------eeE
Q 002209 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-T-------VKE 327 (953)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~-------~~~ 327 (953)
.|+... ..+.|.++++ ++ . ...
T Consensus 196 ~l~s~~-------------------------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~ 226 (430)
T 2xyi_A 196 YLLSAS-------------------------------------------------DDHTICLWDINATPKEHRVIDAKNI 226 (430)
T ss_dssp EEEEEC-------------------------------------------------TTSCEEEEETTSCCBGGGEEECSEE
T ss_pred eEEEEe-------------------------------------------------CCCeEEEEeCCCCCCCCceecccee
Confidence 776551 2245666776 42 1 222
Q ss_pred eCCC-CcccccccCCCC-cEEEEEEecCCccccccCCCCCcceEEEeccCce----EEEeccCCCcccCCccccccccCc
Q 002209 328 IGPP-AVYTSLDPSPDE-KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLAEDIPIAFNSVRKGM 401 (953)
Q Consensus 328 l~~~-~~~~~~~~SpDG-~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~----~~~l~~~~~~~~~p~~~~~~~~~~ 401 (953)
+... ..+..++|+|++ ..++....+ +.|.+||+..+. ...+.. ....+
T Consensus 227 ~~~h~~~v~~v~~~p~~~~~l~s~~~d-------------g~i~i~d~~~~~~~~~~~~~~~-------------~~~~v 280 (430)
T 2xyi_A 227 FTGHTAVVEDVAWHLLHESLFGSVADD-------------QKLMIWDTRNNNTSKPSHTVDA-------------HTAEV 280 (430)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETT-------------SEEEEEETTCSCSSSCSEEEEC-------------CSSCE
T ss_pred ecCCCCCEeeeEEeCCCCCEEEEEeCC-------------CeEEEEECCCCCCCcceeEeec-------------CCCCe
Confidence 3333 678889999954 444444422 389999998542 222211 12345
Q ss_pred cceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCC-CCCceEEeecccccCCeeeccCCceEEEEEecccCc
Q 002209 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ-GEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (953)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 480 (953)
..++|+|+++.+++.. +..+.|.+||+ .. +.....+..+...+..+.|+|+++.++++...++ .
T Consensus 281 ~~i~~~p~~~~~l~tg------------~~dg~v~vwd~--~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~-~ 345 (430)
T 2xyi_A 281 NCLSFNPYSEFILATG------------SADKTVALWDL--RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR-R 345 (430)
T ss_dssp EEEEECSSCTTEEEEE------------ETTSEEEEEET--TCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS-C
T ss_pred EEEEeCCCCCCEEEEE------------eCCCeEEEEeC--CCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC-c
Confidence 7899999998765541 33557999997 22 2234455566777888999999987665554432 2
Q ss_pred eEEEEEcC
Q 002209 481 TRTWVISP 488 (953)
Q Consensus 481 ~~l~~~d~ 488 (953)
..+|.+..
T Consensus 346 i~iwd~~~ 353 (430)
T 2xyi_A 346 LHVWDLSK 353 (430)
T ss_dssp CEEEEGGG
T ss_pred EEEEeCCC
Confidence 35665544
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-08 Score=112.70 Aligned_cols=314 Identities=11% Similarity=0.024 Sum_probs=176.7
Q ss_pred eecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCcccce
Q 002209 115 SFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFV 194 (953)
Q Consensus 115 ~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~ 194 (953)
.+++||++|+..+.+ +.|.+||+.+ + .....+.++ ...+...
T Consensus 124 ~~~~~g~~l~sg~~d---------------------------------g~i~vwd~~~-~--~~~~~~~~h--~~~v~~~ 165 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDD---------------------------------NTLKVWSAVT-G--KCLRTLVGH--TGGVWSS 165 (445)
T ss_dssp EEEEETTEEEEEETT---------------------------------SCEEEEETTT-C--CEEEECCCC--SSCEEEE
T ss_pred EEEEcCCEEEEEECC---------------------------------CcEEEEECCC-C--cEEEEEcCC--CCCEEEE
Confidence 578889998888765 3689999853 2 222333322 2367778
Q ss_pred EeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCC
Q 002209 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (953)
Q Consensus 195 ~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 274 (953)
.|+ ++.|+... .+..|.++|+++++........... +..+.|+ ++.|+...
T Consensus 166 ~~~--~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~--~~~l~s~s------------ 216 (445)
T 2ovr_B 166 QMR--DNIIISGS---------TDRTLKVWNAETGECIHTLYGHTST----VRCMHLH--EKRVVSGS------------ 216 (445)
T ss_dssp EEE--TTEEEEEE---------TTSCEEEEETTTTEEEEEECCCSSC----EEEEEEE--TTEEEEEE------------
T ss_pred Eec--CCEEEEEe---------CCCeEEEEECCcCcEEEEECCCCCc----EEEEEec--CCEEEEEe------------
Confidence 887 55666644 2567888999888765443323222 5566674 45566541
Q ss_pred CCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeCCC-CcccccccCCCCcEEEEEEe
Q 002209 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKYILISSI 351 (953)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDG~~l~~~~~ 351 (953)
..+.|.++|+ +++.. .+... ..+..+.| ||+.|+..+.
T Consensus 217 -------------------------------------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 257 (445)
T 2ovr_B 217 -------------------------------------RDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY 257 (445)
T ss_dssp -------------------------------------TTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET
T ss_pred -------------------------------------CCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC
Confidence 2356778888 66433 33333 56666666 8898888774
Q ss_pred cCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccc
Q 002209 352 HRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVT 430 (953)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~ 430 (953)
+ +.|.+||+..+.. ..+..+. ..+..+.| ||+.++.. +
T Consensus 258 d-------------g~i~iwd~~~~~~~~~~~~~~-------------~~v~~~~~--~~~~l~~~-------------~ 296 (445)
T 2ovr_B 258 D-------------FMVKVWDPETETCLHTLQGHT-------------NRVYSLQF--DGIHVVSG-------------S 296 (445)
T ss_dssp T-------------SCEEEEEGGGTEEEEEECCCS-------------SCEEEEEE--CSSEEEEE-------------E
T ss_pred C-------------CEEEEEECCCCcEeEEecCCC-------------CceEEEEE--CCCEEEEE-------------e
Confidence 4 3899999985543 3333221 22345666 77765554 4
Q ss_pred cCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCC
Q 002209 431 PRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510 (953)
Q Consensus 431 ~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 510 (953)
..+.+.+||+ .++.....+..+...+. .++++++.|+....++ .+.++|+.++ +...........
T Consensus 297 ~d~~i~i~d~--~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~~dg----~i~vwd~~~~--~~~~~~~~~~~~----- 361 (445)
T 2ovr_B 297 LDTSIRVWDV--ETGNCIHTLTGHQSLTS--GMELKDNILVSGNADS----TVKIWDIKTG--QCLQTLQGPNKH----- 361 (445)
T ss_dssp TTSCEEEEET--TTCCEEEEECCCCSCEE--EEEEETTEEEEEETTS----CEEEEETTTC--CEEEEECSTTSC-----
T ss_pred CCCeEEEEEC--CCCCEEEEEcCCcccEE--EEEEeCCEEEEEeCCC----eEEEEECCCC--cEEEEEccCCCC-----
Confidence 4567899996 23322233333333333 3455677777665443 4566666654 222222221100
Q ss_pred CCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEec-cCcccceeeeEeeccCCccc
Q 002209 511 GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE-SDKEKYYETTVALMSDQTEG 589 (953)
Q Consensus 511 ~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 589 (953)
..+...+..++++|+....+ ..|.+||+.+++...... ......-..+. ..
T Consensus 362 ~~~v~~~~~~~~~l~s~~~d---------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~-------~~ 413 (445)
T 2ovr_B 362 QSAVTCLQFNKNFVITSSDD---------------------GTVKLWDLKTGEFIRNLVTLESGGSGGVVW-------RI 413 (445)
T ss_dssp SSCEEEEEECSSEEEEEETT---------------------SEEEEEETTTCCEEEEEEECTTGGGTCEEE-------EE
T ss_pred CCCEEEEEECCCEEEEEeCC---------------------CeEEEEECCCCceeeeeeccccCCCCceEE-------EE
Confidence 11112334456776666522 249999999887655431 11000000111 24
Q ss_pred cccccCCEEEEEEecCCCCceEEEEECCC
Q 002209 590 DLYLNQLKILTSKESKTENTQYYIQSWPD 618 (953)
Q Consensus 590 ~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 618 (953)
+|+|++..++...........++++|...
T Consensus 414 ~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 414 RASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 68888876666555555466788888643
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.8e-10 Score=116.25 Aligned_cols=154 Identities=15% Similarity=0.082 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----cccEEEEcccCCCCCCCC-----cCcc
Q 002209 735 FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-----LFCCGIARSGAYNRTLTP-----FGFQ 804 (953)
Q Consensus 735 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~~~~d~~~~~-----~~~~ 804 (953)
......+|+.++++.+.+...+ +++.++||||||.+++.++.++|+ +++++|++++.++..... +.+.
T Consensus 72 ~~~~~a~~l~~~i~~l~~~~~~--~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~~~~ 149 (254)
T 3ds8_A 72 TPDDWSKWLKIAMEDLKSRYGF--TQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDNGMDLSFK 149 (254)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHHCSCTTCS
T ss_pred CHHHHHHHHHHHHHHHHHHhCC--CceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCcccccccccccccc
Confidence 3567788888888888776433 689999999999999999999988 899999999876633210 0000
Q ss_pred cccchhhhhHHHHHhcCcccccCCCCCcEEEEEeC------CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC--CCcc
Q 002209 805 NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGE------EDNNSGTLTMQSDRFFNALKGHGALCRLVILPF--ESHG 876 (953)
Q Consensus 805 ~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~------~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~H~ 876 (953)
... ........+... ...+.+ +.|+|.++|+ .|.+|| ...++.+...++.....++.+.+.+ ++|.
T Consensus 150 ~~p-~~~~~~~~~~~~--~~~~~~-~~~vl~I~G~~~~~~~~Dg~Vp--~~ss~~l~~~~~~~~~~~~~~~~~g~~a~Hs 223 (254)
T 3ds8_A 150 KLP-NSTPQMDYFIKN--QTEVSP-DLEVLAIAGELSEDNPTDGIVP--TISSLATRLFMPGSAKAYIEDIQVGEDAVHQ 223 (254)
T ss_dssp SCS-SCCHHHHHHHHT--GGGSCT-TCEEEEEEEESBTTBCBCSSSB--HHHHTGGGGTSBTTBSEEEEEEEESGGGCGG
T ss_pred cCC-cchHHHHHHHHH--HhhCCC-CcEEEEEEecCCCCCCCCcEee--HHHHHHHHHHhhccCcceEEEEEeCCCCchh
Confidence 000 001111111111 111222 6899999999 999999 8888887777765545566666766 6687
Q ss_pred CCCcccHHHHHHHHHHHHHHhc
Q 002209 877 YAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 877 ~~~~~~~~~~~~~i~~fl~~~l 898 (953)
.. .++ .++.+.+..||.++.
T Consensus 224 ~l-~~~-~~v~~~i~~fL~~~~ 243 (254)
T 3ds8_A 224 TL-HET-PKSIEKTYWFLEKFK 243 (254)
T ss_dssp GG-GGS-HHHHHHHHHHHHTCC
T ss_pred cc-cCC-HHHHHHHHHHHHHhc
Confidence 64 233 358888999998864
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.1e-10 Score=113.71 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----cccEEEEcccCCCCCCC---CcC--cccc
Q 002209 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-----LFCCGIARSGAYNRTLT---PFG--FQNE 806 (953)
Q Consensus 737 ~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~~~~d~~~~---~~~--~~~~ 806 (953)
....+++.++++++.+...+ +++.++||||||.+++.++.++|. +++.+|++++.++.... ... ....
T Consensus 77 ~~~~~~l~~~i~~l~~~~~~--~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~~~~~~ 154 (249)
T 3fle_A 77 KENAYWIKEVLSQLKSQFGI--QQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMNENVNEIIVDK 154 (249)
T ss_dssp HHHHHHHHHHHHHHHHTTCC--CEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTSSCTTTSCBCT
T ss_pred HHHHHHHHHHHHHHHHHhCC--CceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCcccccCCcchhhhcc
Confidence 45677888888888776533 589999999999999999998863 79999999887654211 000 0001
Q ss_pred cchhhhhHHHHHhcC-cccccCCCCCcEEEEEeC------CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC--CCccC
Q 002209 807 DRTLWEATSTYVEMS-PFMSANKLKKPILLVHGE------EDNNSGTLTMQSDRFFNALKGHGALCRLVILPF--ESHGY 877 (953)
Q Consensus 807 ~~~~~~~~~~~~~~s-p~~~~~~i~~P~Li~~G~------~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~H~~ 877 (953)
.+.+......|...- ....+.+.++|+|.|+|+ .|.+|| ...++.+...++......+.+.+.| +.|..
T Consensus 155 ~g~p~~~~~~~~~l~~~~~~~p~~~~~vl~I~G~~~~~~~sDG~V~--~~Sa~~~~~l~~~~~~~y~e~~v~g~~a~Hs~ 232 (249)
T 3fle_A 155 QGKPSRMNAAYRQLLSLYKIYCGKEIEVLNIYGDLEDGSHSDGRVS--NSSSQSLQYLLRGSTKSYQEMKFKGAKAQHSQ 232 (249)
T ss_dssp TCCBSSCCHHHHHTGGGHHHHTTTTCEEEEEEEECCSSSCBSSSSB--HHHHHTHHHHSTTCSSEEEEEEEESGGGSTGG
T ss_pred cCCCcccCHHHHHHHHHHhhCCccCCeEEEEeccCCCCCCCCCccc--HHHHHHHHHHHhhCCCceEEEEEeCCCCchhc
Confidence 111111112222221 112233456899999998 799999 8888888777777767777777766 78986
Q ss_pred CCcccHHHHHHHHHHHH
Q 002209 878 AARESIMHVLWETDRWL 894 (953)
Q Consensus 878 ~~~~~~~~~~~~i~~fl 894 (953)
.. + ...+.+.|.+||
T Consensus 233 l~-~-n~~V~~~I~~FL 247 (249)
T 3fle_A 233 LH-E-NKDVANEIIQFL 247 (249)
T ss_dssp GG-G-CHHHHHHHHHHH
T ss_pred cc-c-CHHHHHHHHHHh
Confidence 43 3 347788888886
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.8e-09 Score=115.11 Aligned_cols=134 Identities=7% Similarity=-0.014 Sum_probs=77.9
Q ss_pred ccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002209 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (953)
Q Consensus 336 ~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~ 415 (953)
.+.+++||+.++|.... +.+++.|..++..+.+..................+...++++|||++++.
T Consensus 269 ~~~~~~dg~~~~~~s~~-------------g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 269 HPAFSLRSGRLVWPTYT-------------GKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCEECTTTCEEEEEBTT-------------SEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred EeeecCCCCEEEEEeCC-------------CcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 45679999999998732 37999999766554433221110000000011123345789999997766
Q ss_pred EEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
.......+ ......+.|.++|+ ...+. ..+.- .....++.|+|||+.++|..+...+ .|.++|+.++
T Consensus 336 a~~~~~~g---thk~~s~~VsVID~---~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~--~VsVID~~t~ 403 (426)
T 3c75_H 336 LVDQRDEW---KHKAASRFVVVLNA---ETGERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQ--TLHIYDAATG 403 (426)
T ss_dssp EEEECCTT---CTTSCEEEEEEEET---TTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTT--EEEEEETTTC
T ss_pred Eecccccc---cccCCCCEEEEEEC---CCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCC--eEEEEECCCC
Confidence 63321100 00012457999996 33333 33422 2246779999999966666664433 7999999886
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-09 Score=132.67 Aligned_cols=232 Identities=12% Similarity=0.124 Sum_probs=140.4
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeec--ccCCCccccccccceEEecC--CeEEEEEecC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNN--STLLVCTIPL 264 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~~~~wspD--g~~l~~~~~~ 264 (953)
..+..+.|||||++|+.... ...|.++++.++....+ ..... ..+..+.|+|+ |+.|+.+.
T Consensus 10 ~~V~~l~~s~dg~~latg~~---------dg~I~vwd~~~~~~~~~~~l~~h~----~~V~~l~~s~~~~~~~l~s~s-- 74 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSS---------DKTIKIFEVEGETHKLIDTLTGHE----GPVWRVDWAHPKFGTILASCS-- 74 (753)
T ss_dssp CCEEEECCCSSSCCEEEEET---------TTEEEEEEEETTEEEEEEEECCCS----SCEEEEEECCTTSCSEEEEEE--
T ss_pred ceeEEEEECCCCCeEEEEEC---------CCcEEEEecCCCCCccceeccCCc----CceEEEEecCCCCCCEEEEEe--
Confidence 36888999999999888542 44666666654432222 22122 22778999988 88888661
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc---eeEeCCC-Cccccccc
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLDP 339 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~---~~~l~~~-~~~~~~~~ 339 (953)
..+.|.++++ +++ ...+... ..+..++|
T Consensus 75 -----------------------------------------------~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~ 107 (753)
T 3jro_A 75 -----------------------------------------------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 107 (753)
T ss_dssp -----------------------------------------------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred -----------------------------------------------CCCeEEEEECCCCcccccccccCCCCCeEEEEE
Confidence 2245667777 663 3334434 77889999
Q ss_pred CCC--CcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeecc---------
Q 002209 340 SPD--EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS--------- 408 (953)
Q Consensus 340 SpD--G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wsp--------- 408 (953)
+|+ |+.++..+.++ .|.+||+..+........ ......+..+.|+|
T Consensus 108 sp~~~~~~l~sgs~dg-------------~I~vwdl~~~~~~~~~~~----------~~~~~~v~~l~~~p~~~~~~~~~ 164 (753)
T 3jro_A 108 APHEYGPLLLVASSDG-------------KVSVVEFKENGTTSPIII----------DAHAIGVNSASWAPATIEEDGEH 164 (753)
T ss_dssp CCGGGCSEEEEEETTS-------------EEEEEECCSSSCCCCEEE----------ECCSSCEEEEEECCCC-------
T ss_pred CCCCCCCEEEEEeCCC-------------cEEEEEeecCCCcceeEe----------ecCCCceEEEEecCccccccccc
Confidence 999 99998887443 899999985421111110 01123456788999
Q ss_pred ----CCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc----eEEeecccccCCeeeccC---CceEEEEEecc
Q 002209 409 ----DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP----EILHKLDLRYGGISWCDD---SLALVYESWYK 477 (953)
Q Consensus 409 ----Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~----~~l~~~~~~~~~~~~SpD---g~~l~~~~~~~ 477 (953)
||+.++.. +..+.|.+||+ ..+... ..+..+...+..++|+|+ |+.|+..+.++
T Consensus 165 ~~~~d~~~l~sg-------------s~dg~I~iwd~--~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg 229 (753)
T 3jro_A 165 NGTKESRKFVTG-------------GADNLVKIWKY--NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229 (753)
T ss_dssp --CGGGCCEEEE-------------ETTSCEEEEEE--ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred ccCCCCCEEEEE-------------ECCCeEEEEec--cCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence 57766655 44567888886 222222 123345666788999999 78887776544
Q ss_pred cCceEEEEEcCCCCCCCcEEee-cCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 478 TRRTRTWVISPGSKDVAPRILF-DRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 478 ~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
. .++|.+............. ......+.. +.|+|||++++...
T Consensus 230 ~--I~iwd~~~~~~~~~~~~~~~~~~~~~v~~------l~~spdg~~l~s~s 273 (753)
T 3jro_A 230 T--CIIWTQDNEQGPWKKTLLKEEKFPDVLWR------ASWSLSGNVLALSG 273 (753)
T ss_dssp C--EEEEEESSSSSCCBCCBSSSSCCSSCCCC------EEECTTTCCEEEEC
T ss_pred E--EEEecCCCCCCcceeEEeccCCCCCceEE------EEEcCCCCEEEEEc
Confidence 2 3566555432110001111 111112222 78999999988775
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.12 E-value=8.8e-09 Score=110.10 Aligned_cols=246 Identities=10% Similarity=-0.005 Sum_probs=144.3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
....|+|+|||+.|+++.. ....|++++++++ .+.+...... +..++++|||++++..
T Consensus 29 ~~eg~~~d~~g~~l~~~~~--------~~~~i~~~~~~~~-~~~~~~~~~~-----~~~l~~~~dg~l~v~~-------- 86 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDV--------RQNRTWAWSDDGQ-LSPEMHPSHH-----QNGHCLNKQGHLIACS-------- 86 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEG--------GGTEEEEEETTSC-EEEEESSCSS-----EEEEEECTTCCEEEEE--------
T ss_pred cccCCeEeCCCCEEEEEeC--------CCCEEEEEECCCC-eEEEECCCCC-----cceeeECCCCcEEEEe--------
Confidence 4567999999998888653 2468999999988 5555432221 5578899999866543
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC------CcccccccCCC
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP------AVYTSLDPSPD 342 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~------~~~~~~~~SpD 342 (953)
.+...|++++. +|+.+.+... ..+..++++||
T Consensus 87 -----------------------------------------~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~ 125 (296)
T 3e5z_A 87 -----------------------------------------HGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPD 125 (296)
T ss_dssp -----------------------------------------TTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTT
T ss_pred -----------------------------------------cCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCC
Confidence 02246888888 8876655332 23567899999
Q ss_pred CcEEEEEEecCC---cc-ccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002209 343 EKYILISSIHRP---YS-FIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (953)
Q Consensus 343 G~~l~~~~~~~~---~~-~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~ 418 (953)
|+.++....... .. ...........|+.++.+ +..+.+.... ..+..++|+|||+.+ +. +
T Consensus 126 G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~-------------~~~~gi~~s~dg~~l-v~-~ 189 (296)
T 3e5z_A 126 GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDR-------------VKPNGLAFLPSGNLL-VS-D 189 (296)
T ss_dssp SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCC-------------SSEEEEEECTTSCEE-EE-E
T ss_pred CCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCC-------------CCCccEEECCCCCEE-EE-e
Confidence 984443210000 00 000000012367777776 4444333211 123468999999976 43 1
Q ss_pred eccCCCcccccccCCeEEEEecCCCCCCCc----eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCC
Q 002209 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGP----EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVA 494 (953)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~----~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~ 494 (953)
...+.|+++++ ...++. +.+.........+++++||+ |+++. . ..|++++.++. .
T Consensus 190 -----------~~~~~i~~~~~--~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~---~~v~~~~~~g~--~ 248 (296)
T 3e5z_A 190 -----------TGDNATHRYCL--NARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--G---DGVHVLTPDGD--E 248 (296)
T ss_dssp -----------TTTTEEEEEEE--CSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--T---TEEEEECTTSC--E
T ss_pred -----------CCCCeEEEEEE--CCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--C---CeEEEECCCCC--E
Confidence 23457889886 212333 12211233456789999997 44443 2 26899998752 2
Q ss_pred cEEeecCCCccccCCCCCCCeEe-ccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceE
Q 002209 495 PRILFDRSSEDVYSDPGSPMMRR-TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (953)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~p~~~~-SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~ 565 (953)
...+ ..+.. ... +.| +|||+.|+....+ .|+.+++++++.+
T Consensus 249 ~~~~-~~~~~-~~~------~~f~~~d~~~L~v~t~~----------------------~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 249 LGRV-LTPQT-TSN------LCFGGPEGRTLYMTVST----------------------EFWSIETNVRGLE 290 (296)
T ss_dssp EEEE-ECSSC-CCE------EEEESTTSCEEEEEETT----------------------EEEEEECSCCBCC
T ss_pred EEEE-ECCCC-cee------EEEECCCCCEEEEEcCC----------------------eEEEEEccccccc
Confidence 2222 22211 111 668 6898888776521 4999998877654
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.7e-10 Score=113.07 Aligned_cols=145 Identities=10% Similarity=0.052 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-----CCcccEEEEcccCCCCCCCCcCcccccchh
Q 002209 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-----PHLFCCGIARSGAYNRTLTPFGFQNEDRTL 810 (953)
Q Consensus 736 ~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~ 810 (953)
+....+++.++++.|.+... .+++.++||||||.++..++.++ |++++.+|++++.++...... .....
T Consensus 77 ~~~~a~~l~~~~~~l~~~~~--~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~~~---~~~~~- 150 (250)
T 3lp5_A 77 IDKQAVWLNTAFKALVKTYH--FNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMESTST---TAKTS- 150 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTSC--CSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCCCS---SCCCH-
T ss_pred HHHHHHHHHHHHHHHHHHcC--CCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCcccccc---cccCH-
Confidence 45678888999999987653 36899999999999999999876 678999999988765332110 00011
Q ss_pred hhhHHHHHhcCcccccCCCCCcEEEEEeC----CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC--CCCccCCCcccHH
Q 002209 811 WEATSTYVEMSPFMSANKLKKPILLVHGE----EDNNSGTLTMQSDRFFNALKGHGALCRLVILP--FESHGYAARESIM 884 (953)
Q Consensus 811 ~~~~~~~~~~sp~~~~~~i~~P~Li~~G~----~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~--~~~H~~~~~~~~~ 884 (953)
....+... ...+.+ +.|+|+|+|+ .|.+|| ...++.+...++......+.+.+. +++|... .++ .
T Consensus 151 --~~~~l~~~--~~~lp~-~vpvl~I~G~~~~~~Dg~Vp--~~sa~~l~~l~~~~~~~~~~~~v~g~~a~H~~l-~e~-~ 221 (250)
T 3lp5_A 151 --MFKELYRY--RTGLPE-SLTVYSIAGTENYTSDGTVP--YNSVNYGKYIFQDQVKHFTEITVTGANTAHSDL-PQN-K 221 (250)
T ss_dssp --HHHHHHHT--GGGSCT-TCEEEEEECCCCCCTTTBCC--HHHHTTHHHHHTTTSSEEEEEECTTTTBSSCCH-HHH-H
T ss_pred --HHHHHHhc--cccCCC-CceEEEEEecCCCCCCceee--HHHHHHHHHHhcccccceEEEEEeCCCCchhcc-hhC-H
Confidence 11122221 112222 6899999999 999998 888777777776544444445555 4669764 232 3
Q ss_pred HHHHHHHHHHH
Q 002209 885 HVLWETDRWLQ 895 (953)
Q Consensus 885 ~~~~~i~~fl~ 895 (953)
.+.+.+.+||.
T Consensus 222 ~v~~~I~~FL~ 232 (250)
T 3lp5_A 222 QIVSLIRQYLL 232 (250)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHHh
Confidence 56666666654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.9e-09 Score=113.59 Aligned_cols=135 Identities=8% Similarity=0.016 Sum_probs=83.9
Q ss_pred ceEEEEEc-CCceeEeC-CC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE--EEeccCCCc
Q 002209 314 TQLVLVSL-DGTVKEIG-PP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV--RELCDLPLA 387 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l~-~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~--~~l~~~~~~ 387 (953)
+.|.++|+ +++...+. .. ..+..++|+|||+.|+..+.+ +.|.+||+..+.. ..+..
T Consensus 149 g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d-------------g~i~iwd~~~~~~~~~~~~~---- 211 (343)
T 3lrv_A 149 GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD-------------GILDVYNLSSPDQASSRFPV---- 211 (343)
T ss_dssp CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT-------------SCEEEEESSCTTSCCEECCC----
T ss_pred CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC-------------CEEEEEECCCCCCCccEEec----
Confidence 46778888 77654433 22 468889999999999887644 3899999985542 23322
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee---cccccC--Cee
Q 002209 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK---LDLRYG--GIS 462 (953)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~---~~~~~~--~~~ 462 (953)
.....+..++|+|||+.++.. + .+.|.+||+ ..+.....+.. ....+. .++
T Consensus 212 --------~h~~~v~~l~fs~~g~~l~s~-------------~-~~~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (343)
T 3lrv_A 212 --------DEEAKIKEVKFADNGYWMVVE-------------C-DQTVVCFDL--RKDVGTLAYPTYTIPEFKTGTVTYD 267 (343)
T ss_dssp --------CTTSCEEEEEECTTSSEEEEE-------------E-SSBEEEEET--TSSTTCBSSCCCBC-----CCEEEE
T ss_pred --------cCCCCEEEEEEeCCCCEEEEE-------------e-CCeEEEEEc--CCCCcceeecccccccccccceEEE
Confidence 012345789999999876665 3 337999997 22222222221 223333 399
Q ss_pred eccCCceEEEEEecccCceEEEEEcCCC
Q 002209 463 WCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 463 ~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
|+|+|++|+..+..+ ...++|.++...
T Consensus 268 ~~~~g~~l~~~s~~d-~~i~v~~~~~~~ 294 (343)
T 3lrv_A 268 IDDSGKNMIAYSNES-NSLTIYKFDKKT 294 (343)
T ss_dssp ECTTSSEEEEEETTT-TEEEEEEECTTT
T ss_pred ECCCCCEEEEecCCC-CcEEEEEEcccc
Confidence 999999998876522 224677765443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.7e-09 Score=114.29 Aligned_cols=166 Identities=10% Similarity=0.064 Sum_probs=102.4
Q ss_pred ceEEEEEc-CCc-eeEeCCC--CcccccccCC--CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCc
Q 002209 314 TQLVLVSL-DGT-VKEIGPP--AVYTSLDPSP--DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLA 387 (953)
Q Consensus 314 ~~l~~~~~-~g~-~~~l~~~--~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~ 387 (953)
..+..+++ +++ .+.+... ..+..++|+| +|++++..+.+. .|.+||+.++....+.....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg-------------~i~~wd~~~~~~~~~~~~~~- 169 (343)
T 3lrv_A 104 NQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRG-------------TIGFQSYEDDSQYIVHSAKS- 169 (343)
T ss_dssp TEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTC-------------CEEEEESSSSCEEEEECCCS-
T ss_pred CceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCC-------------cEEEEECCCCcEEEEEecCC-
Confidence 35556677 555 3344322 5688899999 999998887443 89999998665543332111
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEEee-cccccCCeeecc
Q 002209 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHK-LDLRYGGISWCD 465 (953)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~-~~~~~~~~~~Sp 465 (953)
...+..++|+|||+.++.. +..+.|.+||+ .++... ..+.. +...+..+.|+|
T Consensus 170 ----------~~~i~~~~~~pdg~~lasg-------------~~dg~i~iwd~--~~~~~~~~~~~~~h~~~v~~l~fs~ 224 (343)
T 3lrv_A 170 ----------DVEYSSGVLHKDSLLLALY-------------SPDGILDVYNL--SSPDQASSRFPVDEEAKIKEVKFAD 224 (343)
T ss_dssp ----------SCCCCEEEECTTSCEEEEE-------------CTTSCEEEEES--SCTTSCCEECCCCTTSCEEEEEECT
T ss_pred ----------CCceEEEEECCCCCEEEEE-------------cCCCEEEEEEC--CCCCCCccEEeccCCCCEEEEEEeC
Confidence 1234679999999876655 44668999996 333333 35554 567788899999
Q ss_pred CCceEEEEEecccCceEEEEEcCCCCCCCcEEeec--CCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD--RSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
||+.|+..+ ++ .+.++|+.++. ....+.. .....+ ....+.|+|+|++|+...
T Consensus 225 ~g~~l~s~~-~~----~v~iwd~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~g~~l~~~s 279 (343)
T 3lrv_A 225 NGYWMVVEC-DQ----TVVCFDLRKDV-GTLAYPTYTIPEFKT----GTVTYDIDDSGKNMIAYS 279 (343)
T ss_dssp TSSEEEEEE-SS----BEEEEETTSST-TCBSSCCCBC---------CCEEEEECTTSSEEEEEE
T ss_pred CCCEEEEEe-CC----eEEEEEcCCCC-cceeecccccccccc----cceEEEECCCCCEEEEec
Confidence 999998877 33 34455555531 1111110 000000 001278999999998765
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-08 Score=113.96 Aligned_cols=284 Identities=11% Similarity=0.035 Sum_probs=164.3
Q ss_pred EeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCC
Q 002209 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (953)
Q Consensus 195 ~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 274 (953)
.+++|++.|+... ....|.++|+.+++........... +..++|+|++ .|+...
T Consensus 127 ~~~~~~~~l~sgs---------~dg~i~vwd~~~~~~~~~~~~h~~~----V~~l~~~~~~-~l~s~s------------ 180 (464)
T 3v7d_B 127 CLQFEDNYVITGA---------DDKMIRVYDSINKKFLLQLSGHDGG----VWALKYAHGG-ILVSGS------------ 180 (464)
T ss_dssp EEEEETTEEEEEE---------TTSCEEEEETTTTEEEEEECCCSSC----EEEEEECSTT-EEEEEE------------
T ss_pred EEEECCCEEEEEc---------CCCcEEEEECCCCcEEEEEeCCCcC----EEEEEEcCCC-EEEEEe------------
Confidence 4556788877754 3567888899888765443322222 7789999999 555431
Q ss_pred CCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeCCC-CcccccccC--CCCcEEEEE
Q 002209 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPS--PDEKYILIS 349 (953)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~S--pDG~~l~~~ 349 (953)
..+.|.++|+ +|+.. .+... ..+..++|+ +|++.|+..
T Consensus 181 -------------------------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~ 223 (464)
T 3v7d_B 181 -------------------------------------TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 223 (464)
T ss_dssp -------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEE
T ss_pred -------------------------------------CCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEE
Confidence 2245777888 77543 34333 677777777 688888887
Q ss_pred EecCCccccccCCCCCcceEEEeccCceEEEeccCCCcc--------cCCc---cccccccCccceeeccCCCCceEEEE
Q 002209 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE--------DIPI---AFNSVRKGMRSINWRSDKPSTLYWAE 418 (953)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~--------~~p~---~~~~~~~~~~~~~wspDg~~i~~~~~ 418 (953)
+.+. .|.+||+............... ..+. ...+. ...-..++++++.++..
T Consensus 224 s~d~-------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~l~~~-- 286 (464)
T 3v7d_B 224 SRDN-------------TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH--MASVRTVSGHGNIVVSG-- 286 (464)
T ss_dssp ETTS-------------CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC--SSCEEEEEEETTEEEEE--
T ss_pred cCCC-------------cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc--cceEEEEcCCCCEEEEE--
Confidence 7443 8999999854322111000000 0000 00001 01123457777766555
Q ss_pred eccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEe
Q 002209 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (953)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 498 (953)
+..+.|.+||+ .++.....+..+...+..+.|+|||+.|+..+.++ .|.++|+.++ +....
T Consensus 287 -----------~~d~~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg----~i~vwd~~~~--~~~~~ 347 (464)
T 3v7d_B 287 -----------SYDNTLIVWDV--AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT----TIRIWDLENG--ELMYT 347 (464)
T ss_dssp -----------ETTSCEEEEET--TTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS----CEEEEETTTT--EEEEE
T ss_pred -----------eCCCeEEEEEC--CCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCC--cEEEE
Confidence 44568999996 22222333445566677899999999988776543 4666676664 33333
Q ss_pred ecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceee
Q 002209 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYET 578 (953)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~ 578 (953)
.......+.. +.|+ +++|+....+ ..+.+||+.+++..........
T Consensus 348 ~~~h~~~v~~------~~~~--~~~l~s~s~d---------------------g~v~vwd~~~~~~~~~~~~~~~----- 393 (464)
T 3v7d_B 348 LQGHTALVGL------LRLS--DKFLVSAAAD---------------------GSIRGWDANDYSRKFSYHHTNL----- 393 (464)
T ss_dssp ECCCSSCEEE------EEEC--SSEEEEEETT---------------------SEEEEEETTTCCEEEEEECTTC-----
T ss_pred EeCCCCcEEE------EEEc--CCEEEEEeCC---------------------CcEEEEECCCCceeeeecCCCC-----
Confidence 3333222221 4444 5666665522 2499999988765544332211
Q ss_pred eEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeE
Q 002209 579 TVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (953)
Q Consensus 579 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~ 623 (953)
.....|+++++.++... . ..+.++++.+++...
T Consensus 394 -------~~~~~~~~~~~~l~~~~-d----g~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 394 -------SAITTFYVSDNILVSGS-E----NQFNIYNLRSGKLVH 426 (464)
T ss_dssp -------CCEEEEEECSSEEEEEE-T----TEEEEEETTTCCEEE
T ss_pred -------ccEEEEEeCCCEEEEec-C----CeEEEEECCCCcEEe
Confidence 11235788888666433 2 469999998887553
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.10 E-value=7.5e-09 Score=112.72 Aligned_cols=238 Identities=13% Similarity=0.043 Sum_probs=135.4
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
.|++|+..+ ++.+.+.. .....+..+.|+|||+.++.... .......|++++.++++.+.+...... .
T Consensus 67 ~i~~~d~~~----~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~-----~~~~~~~i~~~d~~~~~~~~~~~~~~~--~ 134 (333)
T 2dg1_A 67 NIFKINPET----KEIKRPFV-SHKANPAAIKIHKDGRLFVCYLG-----DFKSTGGIFAATENGDNLQDIIEDLST--A 134 (333)
T ss_dssp EEEEECTTT----CCEEEEEE-CSSSSEEEEEECTTSCEEEEECT-----TSSSCCEEEEECTTSCSCEEEECSSSS--C
T ss_pred EEEEEeCCC----CcEEEEee-CCCCCcceEEECCCCcEEEEeCC-----CCCCCceEEEEeCCCCEEEEEEccCcc--C
Confidence 678888743 33333331 12235788899999975544321 011235899999998876643221110 1
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~ 322 (953)
..+..+.++|||+.++.. .... ..+ ....||+++. +
T Consensus 135 ~~~~~i~~d~~g~l~v~~-~~~~-----------------------------------~~~-------~~~~l~~~~~~~ 171 (333)
T 2dg1_A 135 YCIDDMVFDSKGGFYFTD-FRGY-----------------------------------STN-------PLGGVYYVSPDF 171 (333)
T ss_dssp CCEEEEEECTTSCEEEEE-CCCB-----------------------------------TTB-------CCEEEEEECTTS
T ss_pred CcccceEECCCCCEEEEe-cccc-----------------------------------ccC-------CCceEEEEeCCC
Confidence 115578899999755533 0000 000 2357889988 5
Q ss_pred CceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc--CceEEEeccCCCcccCCcccccccc
Q 002209 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRK 399 (953)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~ 399 (953)
++.+.+... .....++|+|||++|+++... ...|++|+++ +.....+....... +.+. .
T Consensus 172 ~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~------------~~~i~~~d~~~~g~~~~~~~~~~~~~-----~~~~-~ 233 (333)
T 2dg1_A 172 RTVTPIIQNISVANGIALSTDEKVLWVTETT------------ANRLHRIALEDDGVTIQPFGATIPYY-----FTGH-E 233 (333)
T ss_dssp CCEEEEEEEESSEEEEEECTTSSEEEEEEGG------------GTEEEEEEECTTSSSEEEEEEEEEEE-----CCSS-S
T ss_pred CEEEEeecCCCcccceEECCCCCEEEEEeCC------------CCeEEEEEecCCCcCcccccceEEEe-----cCCC-C
Confidence 666665443 456678999999988777522 1378999985 33332221000000 0000 1
Q ss_pred CccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeeccc------ccCCeeeccCCceEEEE
Q 002209 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL------RYGGISWCDDSLALVYE 473 (953)
Q Consensus 400 ~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~------~~~~~~~SpDg~~l~~~ 473 (953)
.+..+++++||+ +|... ...+.|++++. ++.....+..... ....++|+|||+.|+++
T Consensus 234 ~~~~i~~d~~G~--l~v~~-----------~~~~~v~~~d~---~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~ 297 (333)
T 2dg1_A 234 GPDSCCIDSDDN--LYVAM-----------YGQGRVLVFNK---RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIIC 297 (333)
T ss_dssp EEEEEEEBTTCC--EEEEE-----------ETTTEEEEECT---TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred CCCceEECCCCC--EEEEE-----------cCCCEEEEECC---CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEE
Confidence 234688999996 23311 12357888884 4443344433322 46678999999888877
Q ss_pred Eeccc--CceEEEEEcCCC
Q 002209 474 SWYKT--RRTRTWVISPGS 490 (953)
Q Consensus 474 ~~~~~--~~~~l~~~d~~~ 490 (953)
...+. ....||.+++..
T Consensus 298 ~~~g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 298 SNDIEMGGGSMLYTVNGFA 316 (333)
T ss_dssp EECGGGTCCEEEEEEECSS
T ss_pred eCccCCCCCceEEEEeccc
Confidence 65431 234788888654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-08 Score=109.70 Aligned_cols=237 Identities=10% Similarity=0.018 Sum_probs=135.4
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
....++|+|||+ |+++.. ....|+++++++++.+.+....... +..++|+|||+.++.....
T Consensus 46 ~~~~~~~~~~g~-l~~~~~--------~~~~i~~~d~~~~~~~~~~~~~~~~----~~~i~~~~dg~l~v~~~~~----- 107 (333)
T 2dg1_A 46 QLEGLNFDRQGQ-LFLLDV--------FEGNIFKINPETKEIKRPFVSHKAN----PAAIKIHKDGRLFVCYLGD----- 107 (333)
T ss_dssp CEEEEEECTTSC-EEEEET--------TTCEEEEECTTTCCEEEEEECSSSS----EEEEEECTTSCEEEEECTT-----
T ss_pred cccCcEECCCCC-EEEEEC--------CCCEEEEEeCCCCcEEEEeeCCCCC----cceEEECCCCcEEEEeCCC-----
Confidence 457899999998 555431 2458999999998877665322221 6688999999866644100
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEe-CC--C-CcccccccCCCCc
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI-GP--P-AVYTSLDPSPDEK 344 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l-~~--~-~~~~~~~~SpDG~ 344 (953)
.+ ....|++++. +++.+.+ .. . ..+..+.++|||+
T Consensus 108 ---------------------------------~~-------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~ 147 (333)
T 2dg1_A 108 ---------------------------------FK-------STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG 147 (333)
T ss_dssp ---------------------------------SS-------SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC
T ss_pred ---------------------------------CC-------CCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC
Confidence 00 1246888888 6655533 21 1 4566789999997
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
.++ +..... .......|+.++.+++..+.+.... ..+..++|+|||+.+++. +
T Consensus 148 l~v-~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~dg~~l~v~-~------ 200 (333)
T 2dg1_A 148 FYF-TDFRGY------STNPLGGVYYVSPDFRTVTPIIQNI-------------SVANGIALSTDEKVLWVT-E------ 200 (333)
T ss_dssp EEE-EECCCB------TTBCCEEEEEECTTSCCEEEEEEEE-------------SSEEEEEECTTSSEEEEE-E------
T ss_pred EEE-Eecccc------ccCCCceEEEEeCCCCEEEEeecCC-------------CcccceEECCCCCEEEEE-e------
Confidence 544 332110 0011236888888766655543210 123568999999866554 1
Q ss_pred cccccccCCeEEEEecCCCCCCCceEE-----eecc--cccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEE
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEIL-----HKLD--LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~l-----~~~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 497 (953)
...+.|++++. ..++.....+ .... .....+.+++||+. +++...+ ..|++++.++. ....
T Consensus 201 -----~~~~~i~~~d~-~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~~---~~v~~~d~~g~--~~~~ 268 (333)
T 2dg1_A 201 -----TTANRLHRIAL-EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL-YVAMYGQ---GRVLVFNKRGY--PIGQ 268 (333)
T ss_dssp -----GGGTEEEEEEE-CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE-EEEEETT---TEEEEECTTSC--EEEE
T ss_pred -----CCCCeEEEEEe-cCCCcCcccccceEEEecCCCCCCCceEECCCCCE-EEEEcCC---CEEEEECCCCC--EEEE
Confidence 22457888885 1122222221 1111 23456899999974 3333222 26888888542 2222
Q ss_pred eecCCCc------cccCCCCCCCeEeccCCCEEEEEeee
Q 002209 498 LFDRSSE------DVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 498 ~~~~~~~------~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
+. .... ...+ +.|+|||+.|++....
T Consensus 269 ~~-~~~~~~g~~~~~~~------~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 269 IL-IPGRDEGHMLRSTH------PQFIPGTNQLIICSND 300 (333)
T ss_dssp EE-CTTGGGTCSCBCCE------EEECTTSCEEEEEEEC
T ss_pred EE-cCCCccccccCcce------EEECCCCCEEEEEeCc
Confidence 22 1111 1111 7799999888776643
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-08 Score=109.89 Aligned_cols=234 Identities=12% Similarity=0.031 Sum_probs=141.2
Q ss_pred CCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCcc
Q 002209 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (953)
Q Consensus 112 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~ 191 (953)
..+.|+||++.++++... . +.|++++..+ +..+.+. ++ ..+
T Consensus 52 egp~~~~~~~~l~~~d~~--------------------------~------~~i~~~d~~~----~~~~~~~-~~--~~v 92 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNIL--------------------------E------RELHELHLAS----GRKTVHA-LP--FMG 92 (326)
T ss_dssp EEEEEETTTTEEEEEEGG--------------------------G------TEEEEEETTT----TEEEEEE-CS--SCE
T ss_pred cCCeEeCCCCEEEEEECC--------------------------C------CEEEEEECCC----CcEEEEE-CC--Ccc
Confidence 368899999888887642 0 2678888743 3333332 22 357
Q ss_pred cceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002209 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (953)
Q Consensus 192 ~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~ 271 (953)
..+.|+|||+.++.. ...|+++|.++|+.+.+...........+..+.++|||+. +++.....
T Consensus 93 ~~i~~~~dg~l~v~~-----------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~~~----- 155 (326)
T 2ghs_A 93 SALAKISDSKQLIAS-----------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGAL-WIGTMGRK----- 155 (326)
T ss_dssp EEEEEEETTEEEEEE-----------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCE-EEEEEETT-----
T ss_pred eEEEEeCCCeEEEEE-----------CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCE-EEEeCCCc-----
Confidence 788999999866653 1259999999888776654322111112557889999984 44411000
Q ss_pred CCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccCCCCcEEEEEE
Q 002209 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISS 350 (953)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~ 350 (953)
.. .....||+++ +|+.+.+... .....++|||||+.|++..
T Consensus 156 ------------------------------~~-------~~~~~l~~~~-~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 156 ------------------------------AE-------TGAGSIYHVA-KGKVTKLFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp ------------------------------CC-------TTCEEEEEEE-TTEEEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred ------------------------------CC-------CCceEEEEEe-CCcEEEeeCCCcccCCeEEcCCCCEEEEEE
Confidence 00 0335788888 7877666443 4456789999999988875
Q ss_pred ecCCccccccCCCCCcceEEEecc--Cc-eE---EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 351 IHRPYSFIVPCGRFPRQVGVWTTD--GI-FV---RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~~d~~--g~-~~---~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
.. ...|++++++ ++ .. +.+...... ...+..+.+++||. +|...
T Consensus 198 ~~------------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~----------~~~p~gi~~d~~G~--lwva~------ 247 (326)
T 2ghs_A 198 TK------------VNRLMRVPLDARTGLPTGKAEVFIDSTGI----------KGGMDGSVCDAEGH--IWNAR------ 247 (326)
T ss_dssp TT------------TCEEEEEEBCTTTCCBSSCCEEEEECTTS----------SSEEEEEEECTTSC--EEEEE------
T ss_pred CC------------CCEEEEEEcccccCCcccCceEEEECCCC----------CCCCCeeEECCCCC--EEEEE------
Confidence 22 2379999985 33 21 112111100 01234678888885 23211
Q ss_pred cccccccCCeEEEEecCCCCCCCceEEeecccccCCeeec-cCCceEEEEEecc
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWC-DDSLALVYESWYK 477 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~S-pDg~~l~~~~~~~ 477 (953)
...+.|++++. ++.....+......+..++|+ +|++.|++.....
T Consensus 248 -----~~~~~v~~~d~---~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 248 -----WGEGAVDRYDT---DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp -----ETTTEEEEECT---TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred -----eCCCEEEEECC---CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 12347888883 444344454444456778998 8999888776443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.6e-08 Score=110.43 Aligned_cols=275 Identities=11% Similarity=-0.000 Sum_probs=146.4
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccc-cCCCCcceEEEEECCCCceeecccCC-Ccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAE-DSSSSKLRVWVADVDTGKARPLFQSP-DIY 241 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~-~~~~~~~~l~~~d~~~g~~~~lt~~~-~~~ 241 (953)
.|.++|..+ .+ .+..++-+... .+.+||||++|+........ ..+.....|.++|+.+++...-...+ ...
T Consensus 100 ~VsVID~~t----~~--vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r 172 (426)
T 3c75_H 100 QQFVIDGST----GR--ILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR 172 (426)
T ss_dssp EEEEEETTT----TE--EEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred eEEEEECCC----CE--EEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc
Confidence 678988743 22 22223333444 89999999999886531100 00112457999999998764322212 000
Q ss_pred c--cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEE
Q 002209 242 L--NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (953)
Q Consensus 242 ~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 319 (953)
. ......+.++|||++||++.. . ....|.++
T Consensus 173 ~~~g~~P~~~~~spDGk~lyV~n~--------------------------------------~---------~~~~VsVI 205 (426)
T 3c75_H 173 FLVGTYQWMNALTPDNKNLLFYQF--------------------------------------S---------PAPAVGVV 205 (426)
T ss_dssp CCBSCCGGGSEECTTSSEEEEEEC--------------------------------------S---------SSCEEEEE
T ss_pred cccCCCcceEEEcCCCCEEEEEec--------------------------------------C---------CCCeEEEE
Confidence 0 001347899999999998710 0 12467888
Q ss_pred Ec-CCce-eEeCCCCc--------ccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-Eec-cCCCc
Q 002209 320 SL-DGTV-KEIGPPAV--------YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELC-DLPLA 387 (953)
Q Consensus 320 ~~-~g~~-~~l~~~~~--------~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~-~~~~~ 387 (953)
|+ +++. ..+.-++. ..-+.+++||+.+++.. ..+.+. ..+ ....
T Consensus 206 D~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~-----------------------~~~~v~~~~~~~~~v- 261 (426)
T 3c75_H 206 DLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDF-----------------------ADGETKVTNTEVFHT- 261 (426)
T ss_dssp ETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEEC-----------------------CTTCCEEEECCCCSC-
T ss_pred ECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEEC-----------------------CCCcEEEEeeeeecc-
Confidence 88 7654 33332211 11134455555444332 211111 111 0000
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee-------------c
Q 002209 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-------------L 454 (953)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~-------------~ 454 (953)
...|. ...+.+++||+.++|. ...+.++++|. .++....+.. .
T Consensus 262 ~~~p~--------~~~~~~~~dg~~~~~~-------------s~~g~V~ViD~---~~~~~~v~~~~~~~~~~~i~~g~~ 317 (426)
T 3c75_H 262 EDELL--------INHPAFSLRSGRLVWP-------------TYTGKIFQADL---TAEGATFRAPIEALTEAERADDWR 317 (426)
T ss_dssp TTSCB--------CSCCEECTTTCEEEEE-------------BTTSEEEEEEE---CSSCEEECCCEESSCTTTGGGTEE
T ss_pred CCCce--------eeEeeecCCCCEEEEE-------------eCCCcEEEEec---cCCceEEeeeeeeccccccccccc
Confidence 00111 1235689999888776 23457889885 4333222211 0
Q ss_pred ccccCCeeeccCCceEEEEEecc------cCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 455 DLRYGGISWCDDSLALVYESWYK------TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 455 ~~~~~~~~~SpDg~~l~~~~~~~------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
......++++|||++|+...... .....|+++|+.+.. ....+.-.. ...+ +.|+|||+.++|..
T Consensus 318 p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k-vv~~I~vg~--~P~g------ia~spDg~~~lyv~ 388 (426)
T 3c75_H 318 PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE-RINKIELGH--EIDS------INVSQDAEPLLYAL 388 (426)
T ss_dssp ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC-EEEEEEEEE--EECE------EEECCSSSCEEEEE
T ss_pred cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe-EEEEEECCC--CcCe------EEEccCCCEEEEEE
Confidence 11122378999999988764321 113479999999862 122221111 1111 78999999555655
Q ss_pred eeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 529 KKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
+.. ...|.++|+.+++...-.
T Consensus 389 n~~-------------------s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 389 SAG-------------------TQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ETT-------------------TTEEEEEETTTCCEEEEE
T ss_pred cCC-------------------CCeEEEEECCCCCEEEEe
Confidence 311 125999999999876543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.07 E-value=6.7e-09 Score=113.14 Aligned_cols=205 Identities=11% Similarity=0.067 Sum_probs=118.9
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc----ee-ecccCCCccccccccceEEec--CCeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK----AR-PLFQSPDIYLNAIFDNFVWVN--NSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~----~~-~lt~~~~~~~~~~~~~~~wsp--Dg~~l~~~ 261 (953)
..+....|+|||+.|+.... ...|.++++.++. .. .+..+.. .+..++|+| |++.|+..
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~d~~~l~s~ 77 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSS---------DQHIKVFKLDKDTSNWELSDSWRAHDS-----SIVAIDWASPEYGRIIASA 77 (351)
T ss_dssp SCEEEEEECSSSSEEEEEET---------TSEEEEEEECSSSCCEEEEEEEECCSS-----CEEEEEECCGGGCSEEEEE
T ss_pred cceeEEEEcCCCCEEEEeeC---------CCeEEEEECCCCCCcceecceeccCCC-----cEEEEEEcCCCCCCEEEEE
Confidence 46899999999999887552 4567777776542 11 1222222 277899998 68888876
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc----------eeEeCC
Q 002209 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----------VKEIGP 330 (953)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~----------~~~l~~ 330 (953)
. ..+.|.++++ +++ ...+..
T Consensus 78 ~-------------------------------------------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 108 (351)
T 3f3f_A 78 S-------------------------------------------------YDKTVKLWEEDPDQEECSGRRWNKLCTLND 108 (351)
T ss_dssp E-------------------------------------------------TTSCEEEEEECTTSCTTSSCSEEEEEEECC
T ss_pred c-------------------------------------------------CCCeEEEEecCCCcccccccCcceeeeecc
Confidence 1 1234556666 432 333433
Q ss_pred C-CcccccccCCC--CcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceee
Q 002209 331 P-AVYTSLDPSPD--EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINW 406 (953)
Q Consensus 331 ~-~~~~~~~~SpD--G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~w 406 (953)
. ..+..++|+|+ |+.|+..+.+. .|.+||+..+.. +.+...................+..+.|
T Consensus 109 ~~~~v~~~~~~~~~~~~~l~~~~~dg-------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (351)
T 3f3f_A 109 SKGSLYSVKFAPAHLGLKLACLGNDG-------------ILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW 175 (351)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTC-------------EEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE
T ss_pred cCCceeEEEEcCCCCCcEEEEecCCC-------------cEEEecCCChHHhccccccccccccccccCCcccceeEEEe
Confidence 3 77889999999 99998887443 899999874331 1111000000001111122344567999
Q ss_pred ccC---CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE---EeecccccCCeeeccCC----ceEEEEEec
Q 002209 407 RSD---KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI---LHKLDLRYGGISWCDDS----LALVYESWY 476 (953)
Q Consensus 407 spD---g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~---l~~~~~~~~~~~~SpDg----~~l~~~~~~ 476 (953)
+|+ ++.++.. ...+.+..++. ..+.... +..+...+..+.|+|+| +.|+....+
T Consensus 176 ~p~~~~~~~l~~~-------------~~~~~~~~~~~---~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 176 CPSRFSPEKLAVS-------------ALEQAIIYQRG---KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp CCCSSSCCEEEEE-------------ETTEEEEEEEC---TTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred ccCCCCCcEEEEe-------------cCCCcEEEEcc---CCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 998 6655444 22334444442 3344322 23445567789999998 566665544
Q ss_pred ccCceEEEEEc
Q 002209 477 KTRRTRTWVIS 487 (953)
Q Consensus 477 ~~~~~~l~~~d 487 (953)
+ ..++|.+.
T Consensus 240 g--~i~iwd~~ 248 (351)
T 3f3f_A 240 G--RIRIFKIT 248 (351)
T ss_dssp S--CEEEEEEE
T ss_pred C--eEEEEeCC
Confidence 3 23666655
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.06 E-value=6.1e-10 Score=128.05 Aligned_cols=211 Identities=15% Similarity=0.051 Sum_probs=128.8
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHH-HHcCcEEEEcCCC-CC
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW-LARGFAILGGPTT-PI 723 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~G~~V~~~~~~-~~ 723 (953)
+.|. +...+|.|.+.... .++|+|||+|||.+..+. ...+. .. .... ...|++|+.++|+ +.
T Consensus 82 ~edc--l~l~v~~P~~~~~~--~~~Pviv~iHGGg~~~g~--------~~~~~---~~-~~~~~~~~g~vvv~~nYRlg~ 145 (522)
T 1ukc_A 82 SEDC--LFINVFKPSTATSQ--SKLPVWLFIQGGGYAENS--------NANYN---GT-QVIQASDDVIVFVTFNYRVGA 145 (522)
T ss_dssp ESCC--CEEEEEEETTCCTT--CCEEEEEEECCSTTTSCC--------SCSCC---CH-HHHHHTTSCCEEEEECCCCHH
T ss_pred CCcC--CEEEEEECCCCCCC--CCCCEEEEECCCccccCC--------ccccC---cH-HHHHhcCCcEEEEEecccccc
Confidence 3454 45678888754322 358999999998655432 11221 11 1111 2469999998886 23
Q ss_pred CCCCChhhhh--hhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC----CCcccEEEEcccCC
Q 002209 724 IGEGDEEAND--RFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHA----PHLFCCGIARSGAY 794 (953)
Q Consensus 724 ~G~G~~~~~~--~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~----p~~~~a~v~~~~~~ 794 (953)
.|++...... ..+...+.|+.++++|+.++- ..|+++|.|+|+|+||.++..++... +.+|+++|+.+|..
T Consensus 146 ~Gf~~~~~~~~~~~~n~gl~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~ 225 (522)
T 1ukc_A 146 LGFLASEKVRQNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFW 225 (522)
T ss_dssp HHHCCCHHHHHSSCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCC
T ss_pred cccccchhccccCCCChhHHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCc
Confidence 3444432211 123567899999999998752 36999999999999999888777653 46899999999875
Q ss_pred CCCCCCcCcccccchhh-------------hhHHHHHhcCccc---------ccCCCCCc--EEEEEeCCCCCCCCchHH
Q 002209 795 NRTLTPFGFQNEDRTLW-------------EATSTYVEMSPFM---------SANKLKKP--ILLVHGEEDNNSGTLTMQ 850 (953)
Q Consensus 795 d~~~~~~~~~~~~~~~~-------------~~~~~~~~~sp~~---------~~~~i~~P--~Li~~G~~D~~v~~~~~~ 850 (953)
...... ......+ +..+.+...++.. .......| .+.++...|..+. +++
T Consensus 226 ~~~~~~----~~~~~~~~~~~~~~gc~~~~~~~~~Lr~~~~~~l~~a~~~~~~~~~~~~~~~~~~f~Pv~D~~~l--~~~ 299 (522)
T 1ukc_A 226 PTQRTV----SEMEFQFERFVNDTGCSSARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLV--PDE 299 (522)
T ss_dssp CCCCCS----GGGHHHHHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHSSCCCCTTCCSSSCCSCCSCCCCCSSSS--CSC
T ss_pred CCcCCH----HHHHHHHHHHHHHcCCCCHHHHHHHHHcCCHHHHHHHHHhccccccccCcccccccccccCCccc--CCC
Confidence 422111 0000000 0111222221111 11112234 5567777887765 677
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 002209 851 SDRFFNALKGHGALCRLVILPFESHGYA 878 (953)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (953)
..+++++-+..++++-+-...+++|.+.
T Consensus 300 p~~~~~~g~~~~vp~l~G~~~~Eg~~f~ 327 (522)
T 1ukc_A 300 LYNAFDAGNFIKVPVLVGDDTDEGSNFA 327 (522)
T ss_dssp HHHHHHHTCSCCCCEEEEEETBGGGGTS
T ss_pred HHHHHhcCCCCCCCEEEEeecchhHHhh
Confidence 7787777666677777777889999875
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.6e-09 Score=118.33 Aligned_cols=267 Identities=8% Similarity=-0.078 Sum_probs=125.8
Q ss_pred CCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCC-CCc
Q 002209 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD-GAK 190 (953)
Q Consensus 112 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~-~~~ 190 (953)
....++|+++.||..+.+ +.|.|||+.. +.......+..+.. ...
T Consensus 93 ~~~~~~~~~~~las~~~d---------------------------------~~v~lw~~~~-~~~~~~~~~~~~~gH~~~ 138 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQD---------------------------------NTVRLIITKN-ETIITQHVLGGKSGHHNF 138 (393)
T ss_dssp ----CCEEEEEEEEEETT---------------------------------SCEEEEEEET-TEEEEEEEECTTTSCSSC
T ss_pred ceeecCCCCCEEEEEeCC---------------------------------CcEEEEECCC-CccceeeeecccCCCCCc
Confidence 345567888888887765 3678999854 21111122322332 237
Q ss_pred ccceEecc--------CCCeEEEEEeeccccCCCCcceEEEEECCCCce-eecccCCCccccccccceEEecCCeE-EEE
Q 002209 191 LNFVTWSQ--------DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLFQSPDIYLNAIFDNFVWVNNSTL-LVC 260 (953)
Q Consensus 191 ~~~~~wSP--------DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wspDg~~-l~~ 260 (953)
+..+.|+| ||+.||..+. +..|.+||+.++.. ..+..+... +..++|+|++.. |+.
T Consensus 139 v~~v~~~p~~~~~~~~d~~~las~s~---------D~tv~~Wd~~~~~~~~~~~~~~~~-----v~~v~~~p~~~~~l~~ 204 (393)
T 4gq1_A 139 VNDIDIADVYSADNRLAEQVIASVGD---------DCTLIIWRLTDEGPILAGYPLSSP-----GISVQFRPSNPNQLIV 204 (393)
T ss_dssp EEEEEEEEEECTTCSEEEEEEEEEET---------TSEEEEEEEETTEEEEEEEECSSC-----EEEEEEETTEEEEEEE
T ss_pred eEEEEEccccccccCCCCCEEEEEEC---------CCeEEEEECCCCceeeeecCCCCC-----cEEEEECCCCCceEEe
Confidence 99999998 9999988652 45677777765543 333333332 668999999864 554
Q ss_pred EecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCC--ceeEeCCC-Cccccc
Q 002209 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG--TVKEIGPP-AVYTSL 337 (953)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g--~~~~l~~~-~~~~~~ 337 (953)
...+... .+++...+....... . ... .....++..+... ........ ..+..+
T Consensus 205 ~~~d~~v------------~~wd~~t~~~~~~~~-----~-~~~------~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v 260 (393)
T 4gq1_A 205 GERNGNI------------RIFDWTLNLSAEENS-----Q-TEL------VKNPWLLTLNTLPLVNTCHSSGIASSLANV 260 (393)
T ss_dssp EETTSEE------------EEEETTCCC----------------------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred cCCCCEE------------EEEECCCCccccccc-----c-cCC------cccceEEecccccceeeeecccccccceee
Confidence 4211110 111111000000000 0 000 0000001111100 00001111 445566
Q ss_pred ccC-CCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcc----cCCccc-cccccCccceeeccCC
Q 002209 338 DPS-PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAE----DIPIAF-NSVRKGMRSINWRSDK 410 (953)
Q Consensus 338 ~~S-pDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~----~~p~~~-~~~~~~~~~~~wspDg 410 (953)
.|+ |||+.|+..+.+ +.+.+||+..+. ...+....... ..|... ...........|+|..
T Consensus 261 ~~~~~dg~~l~s~s~d-------------~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (393)
T 4gq1_A 261 RWIGSDGSGILAMCKS-------------GAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRY 327 (393)
T ss_dssp EEETTTTCEEEEECTT-------------SEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred eeecCCCCEEEEEeCC-------------CCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCC
Confidence 665 899999877644 389999997433 22232211110 001000 0000111223344433
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEec
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
..++... .+..+.|++||+ .++.....+..+...+..++|||||+.|++++..
T Consensus 328 ~~~~~~s-----------gs~Dg~V~lwd~--~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 328 MDYFATA-----------HSQHGLIQLINT--YEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp TTEEEEE-----------ETTTTEEEEEET--TCTTCCEEEEECSSCEEEEEECTTSSEEEEEESS
T ss_pred CCEEEEE-----------ECCCCEEEEEEC--CCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 2222221 133568999996 3444455566677778899999999999988643
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.05 E-value=4.3e-08 Score=106.67 Aligned_cols=269 Identities=12% Similarity=0.069 Sum_probs=139.8
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCC-----
Q 002209 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD----- 187 (953)
Q Consensus 113 ~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~----- 187 (953)
.+.+||||++|.....- .+.. .+....+.|.++|..+ + .....|. ++.
T Consensus 82 ~va~spDG~~lyVan~~--------------------~~r~---~~G~~~~~VsviD~~t-~--~v~~~I~-v~~g~r~~ 134 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTV--------------------FSRI---ARGERTDYVEVFDPVT-L--LPTADIE-LPDAPRFL 134 (386)
T ss_dssp EEEECTTSSCEEEEEEE--------------------EEET---TEEEEEEEEEEECTTT-C--CEEEEEE-ETTCCCCC
T ss_pred cEEECCCCCEEEEEccc--------------------cccc---ccCCCCCEEEEEECCC-C--eEEEEEE-CCCccccc
Confidence 48999999998776531 0000 0011113578888743 2 1122332 111
Q ss_pred -CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccc---cceEEecCCeEEEEEec
Q 002209 188 -GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIF---DNFVWVNNSTLLVCTIP 263 (953)
Q Consensus 188 -~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~---~~~~wspDg~~l~~~~~ 263 (953)
+.......+||||++|+.... .....|.++|+++++...-...+........ ..+..++||+++++...
T Consensus 135 ~g~~P~~~a~spDGk~lyVan~-------~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~ 207 (386)
T 3sjl_D 135 VGTYPWMTSLTPDGKTLLFYQF-------SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFG 207 (386)
T ss_dssp BSCCGGGEEECTTSSEEEEEEC-------SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred cCCCCceEEEcCCCCEEEEEEc-------CCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECC
Confidence 225677899999999887542 1246899999999876543322221000000 12356677776665511
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC--Cccccccc-
Q 002209 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDP- 339 (953)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~- 339 (953)
.. +.+ .+. + ..+... .....+.|
T Consensus 208 ~~------------------------------------------------g~v--~~~~~---~~~~~~~~~~~~~~~~~ 234 (386)
T 3sjl_D 208 TE------------------------------------------------GTP--EITHT---EVFHPEDEFLINHPAYS 234 (386)
T ss_dssp SS------------------------------------------------SCC--EEEEC---CCCSCTTSCBCSCCEEE
T ss_pred CC------------------------------------------------CeE--EEeec---ceeccccccccccceeE
Confidence 00 000 000 1 001000 11223455
Q ss_pred CCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002209 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (953)
Q Consensus 340 SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~ 419 (953)
.+||+ ++|.+. .++++++|+.+...+.+..................+...++++||+++++.....
T Consensus 235 ~~dG~-~~~vs~-------------~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~ 300 (386)
T 3sjl_D 235 QKAGR-LVWPTY-------------TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 300 (386)
T ss_dssp TTTTE-EEEEBT-------------TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred cCCCc-EEEEeC-------------CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecc
Confidence 47885 556652 2489999998765444332211000000000111344567889999877766432
Q ss_pred ccCCCcccccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
...+ ......+.|+++|+ ...+. +.+.- .....++.+|+||+.++|..+...+ .|.++|..++
T Consensus 301 ~~~~---~hk~~~~~V~viD~---~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~--~VsViD~~t~ 364 (386)
T 3sjl_D 301 RDEW---RHKTASRFVVVLDA---KTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDK--TLYIHDAESG 364 (386)
T ss_dssp CCTT---CTTSCEEEEEEEET---TTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTT--EEEEEETTTC
T ss_pred cccc---ccCCCCCEEEEEEC---CCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCC--eEEEEECCCC
Confidence 2111 11123468999996 44443 33322 2356689999999866666665444 7999999886
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.05 E-value=8.6e-09 Score=113.47 Aligned_cols=232 Identities=13% Similarity=0.026 Sum_probs=138.2
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+...+|||||+.|+...+ ..+.++++++++......... +..+.|+++++.++++..
T Consensus 20 ~~V~~v~fs~dg~~la~g~~----------~~~~iw~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~----- 78 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTL----------KSFEIYNVHPVAHIMSQEMRH------LSKVRMLHRTNYVAFVTG----- 78 (355)
T ss_dssp CCCCEEEECTTSSEEEEECS----------SEEEEEEETTEEEEEEEECSC------CCEEEECTTSSEEEEECS-----
T ss_pred CceEEEEECCCCCEEEEEcC----------CEEEEEecCCcceeeeeecCC------eEEEEEcCCCCEEEEEEC-----
Confidence 46889999999998887431 134566766655433222222 457788899888876510
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCCCcccccccCCCCcEE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPPAVYTSLDPSPDEKYI 346 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~~~~~~~~~SpDG~~l 346 (953)
+...|.++|+ +|+. ..+.....+..+.|++++ +
T Consensus 79 -------------------------------------------~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~ 113 (355)
T 3vu4_A 79 -------------------------------------------VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--I 113 (355)
T ss_dssp -------------------------------------------STTEEEEEETTTTEEEEEEECSSCEEEEEECSSE--E
T ss_pred -------------------------------------------CccEEEEEECCCCcEEEEEECCCceEEEEEcCCE--E
Confidence 1235677787 6643 333333667788898875 3
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCc--eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~--~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
++.. + +.|++||+.+. ....+.. + . ...++++ +.+++...
T Consensus 114 ~~~~-~-------------~~i~i~d~~~~~~~~~~~~~-------~-------~--~~~~~s~--~~la~~sg------ 155 (355)
T 3vu4_A 114 VVSY-G-------------DVISVFKFGNPWKRITDDIR-------F-------G--GVCEFSN--GLLVYSNE------ 155 (355)
T ss_dssp EEEE-T-------------TEEEEEESSTTCCBSSCCEE-------E-------E--EEEEEET--TEEEEEES------
T ss_pred EEEE-c-------------CEEEEEECCCCceeeEEecc-------C-------C--ceEEEEc--cEEEEeCC------
Confidence 3333 2 27999999854 2111111 0 0 1244555 33333200
Q ss_pred cccccccCCeEEEEecCCCCCCC-----------------ceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEG-----------------PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~-----------------~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
...+.|.+||+ ..+. ...+..+...+..++|||||+.|+..+.++. .+.++|
T Consensus 156 -----~~~g~v~iwd~---~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~---~v~iwd 224 (355)
T 3vu4_A 156 -----FNLGQIHITKL---QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT---IIRVFK 224 (355)
T ss_dssp -----SCTTCEEEEEC---CC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCS---EEEEEE
T ss_pred -----CcCcEEEEEEC---CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCC---EEEEEE
Confidence 23457888886 3322 3556667777889999999999988775542 144556
Q ss_pred CCCCCCCcEEeecC-CCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCc
Q 002209 488 PGSKDVAPRILFDR-SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (953)
Q Consensus 488 ~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~ 563 (953)
+.++. ....+... ....+.. ++|+|||++|+....+ ..+.+||+..+.
T Consensus 225 ~~~~~-~~~~~~~g~h~~~v~~------~~~s~~~~~l~s~s~d---------------------~~v~iw~~~~~~ 273 (355)
T 3vu4_A 225 TEDGV-LVREFRRGLDRADVVD------MKWSTDGSKLAVVSDK---------------------WTLHVFEIFNDQ 273 (355)
T ss_dssp TTTCC-EEEEEECTTCCSCEEE------EEECTTSCEEEEEETT---------------------CEEEEEESSCCS
T ss_pred CCCCc-EEEEEEcCCCCCcEEE------EEECCCCCEEEEEECC---------------------CEEEEEEccCCC
Confidence 66541 22223212 3333444 8899999999887632 248889987653
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-07 Score=102.08 Aligned_cols=281 Identities=12% Similarity=0.005 Sum_probs=149.1
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccc-cCCCCcceEEEEECCCCceeecccCCC-c
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAE-DSSSSKLRVWVADVDTGKARPLFQSPD-I 240 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~-~~~~~~~~l~~~d~~~g~~~~lt~~~~-~ 240 (953)
+.|+++|..+ + .....+ +.+... .+.+||||++|+.+...... ..+.....|.++|+++++...-...+. .
T Consensus 59 ~~V~ViD~~t-~--~v~~~I---~vG~~P-~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~ 131 (386)
T 3sjl_D 59 TQQFVIDGEA-G--RVIGMI---DGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 131 (386)
T ss_dssp EEEEEEETTT-T--EEEEEE---EECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CEEEEEECCC-C--eEEEEE---ECCCCC-cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc
Confidence 3678988743 1 112233 233333 49999999998886531100 000123569999999987643222111 0
Q ss_pred c--ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEE
Q 002209 241 Y--LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (953)
Q Consensus 241 ~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 318 (953)
. .......+.++|||++++++.. . ....+.+
T Consensus 132 r~~~g~~P~~~a~spDGk~lyVan~--------------------------------------~---------~~~~VsV 164 (386)
T 3sjl_D 132 RFLVGTYPWMTSLTPDGKTLLFYQF--------------------------------------S---------PAPAVGV 164 (386)
T ss_dssp CCCBSCCGGGEEECTTSSEEEEEEC--------------------------------------S---------SSCEEEE
T ss_pred ccccCCCCceEEEcCCCCEEEEEEc--------------------------------------C---------CCCeEEE
Confidence 0 0001447899999999997610 0 1246778
Q ss_pred EEc-CCce-eEeCCCC--------cccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcc
Q 002209 319 VSL-DGTV-KEIGPPA--------VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE 388 (953)
Q Consensus 319 ~~~-~g~~-~~l~~~~--------~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~ 388 (953)
+|+ +++. ..+..++ .-.-++.++||+++++..... +.+ + +... .+.. ..
T Consensus 165 ID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~------------g~v-~-~~~~----~~~~---~~ 223 (386)
T 3sjl_D 165 VDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE------------GTP-E-ITHT----EVFH---PE 223 (386)
T ss_dssp EETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSS------------SCC-E-EEEC----CCCS---CT
T ss_pred EECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCC------------CeE-E-Eeec----ceec---cc
Confidence 888 6643 3332211 111236778887665554211 122 0 1000 0000 00
Q ss_pred cCCccccccccCccceeec-cCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec-------------
Q 002209 389 DIPIAFNSVRKGMRSINWR-SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL------------- 454 (953)
Q Consensus 389 ~~p~~~~~~~~~~~~~~ws-pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~------------- 454 (953)
..|. ...+.|. +||+ ++|. +..+.++++|. .++..+.+...
T Consensus 224 ~~~~--------~~~~~~~~~dG~-~~~v-------------s~~g~V~v~d~---~~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 224 DEFL--------INHPAYSQKAGR-LVWP-------------TYTGKIHQIDL---SSGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp TSCB--------CSCCEEETTTTE-EEEE-------------BTTSEEEEEEC---TTSSCEECCCEESSCHHHHHTTEE
T ss_pred cccc--------cccceeEcCCCc-EEEE-------------eCCCEEEEEEC---CCCcceeecceecccccccccccc
Confidence 1111 1134674 7774 5555 33457999995 44443332111
Q ss_pred ccccCCeeeccCCceEEEEEecc------cCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 455 DLRYGGISWCDDSLALVYESWYK------TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 455 ~~~~~~~~~SpDg~~l~~~~~~~------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
......+++++|+++|+.....+ ....++|++|+.++....+...... .++ +.+|+||+.++|..
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~---~~~------lavs~D~~~~ly~t 349 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE---IDS------INVSQDEKPLLYAL 349 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE---ECE------EEECSSSSCEEEEE
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCC---cce------EEECCCCCeEEEEE
Confidence 11223478899999998875421 1235899999998632112212211 222 88999998666664
Q ss_pred eeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccC
Q 002209 529 KKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (953)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~ 571 (953)
+.. ...+.++|..+++...-....
T Consensus 350 n~~-------------------~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 350 STG-------------------DKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp ETT-------------------TTEEEEEETTTCCEEEEECCC
T ss_pred cCC-------------------CCeEEEEECCCCcEEEEecCC
Confidence 321 124899999998876655444
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-08 Score=107.74 Aligned_cols=253 Identities=9% Similarity=0.038 Sum_probs=145.0
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
...+.|+|||+.|+|+... . +.|+.|+. +| ..+.+.. + ...
T Consensus 47 ~egp~~~~~g~~l~~~d~~--------------------------~------~~i~~~~~--~g---~~~~~~~-~-~~~ 87 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLV--------------------------G------RRVLGWRE--DG---TVDVLLD-A-TAF 87 (305)
T ss_dssp EEEEEEEGGGTEEEEEETT--------------------------T------TEEEEEET--TS---CEEEEEE-S-CSC
T ss_pred ccCCeEeCCCCEEEEEECC--------------------------C------CEEEEEeC--CC---CEEEEeC-C-CCc
Confidence 3478999999998888653 0 25677775 23 2333332 1 235
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
...+.|+|||+.++... +...|++++.+ |+.+.+...........+..+++.|||+ |+++.+......
T Consensus 88 ~~gl~~d~dG~l~v~~~---------~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~- 155 (305)
T 3dr2_A 88 TNGNAVDAQQRLVHCEH---------GRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRK- 155 (305)
T ss_dssp EEEEEECTTSCEEEEET---------TTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSC-
T ss_pred cceeeECCCCCEEEEEC---------CCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccc-
Confidence 67789999998554421 24589999987 5555554321111111145788999997 444311000000
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEE
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILI 348 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~ 348 (953)
..++. ..... .....||+++. +|+.+.+. . .....++|||||+.|++
T Consensus 156 ------------~~~~~------------~~~~~------~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv 204 (305)
T 3dr2_A 156 ------------PSQGC------------PADPE------LAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYV 204 (305)
T ss_dssp ------------GGGSC------------CCCCS------SSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEE
T ss_pred ------------ccccc------------ccccc------cCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEE
Confidence 00000 00000 02357999999 88877766 5 55567899999999887
Q ss_pred EEecCCccccccCCCCCcceEEEeccCceEE---EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR---ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~---~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
+..... ......|++++++++... .+.... ...+..+.+++||+ +|.
T Consensus 205 ~~~~~~-------~~~~~~i~~~~~~~~~l~~~~~~~~~~------------~~~pdgi~~d~~G~--lwv--------- 254 (305)
T 3dr2_A 205 SQTPEQ-------GHGSVEITAFAWRDGALHDRRHFASVP------------DGLPDGFCVDRGGW--LWS--------- 254 (305)
T ss_dssp EECCC----------CCCEEEEEEEETTEEEEEEEEECCS------------SSCCCSEEECTTSC--EEE---------
T ss_pred EecCCc-------CCCCCEEEEEEecCCCccCCeEEEECC------------CCCCCeEEECCCCC--EEE---------
Confidence 763210 001247999998754321 111110 02234688999997 333
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
...+.|++++. +|.....+.... ....+.|++|++.|+++... .||.+++
T Consensus 255 ----~~~~gv~~~~~---~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~-----~l~~~~~ 304 (305)
T 3dr2_A 255 ----SSGTGVCVFDS---DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGP-----CLWMLPL 304 (305)
T ss_dssp ----CCSSEEEEECT---TSCEEEEEECSS-CCCEEEECTTSCEEEEEETT-----EEEEEEC
T ss_pred ----ecCCcEEEECC---CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCC-----eEEEEEC
Confidence 12346888884 554444444333 46778999999998887642 5777654
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=99.03 E-value=9.5e-10 Score=115.60 Aligned_cols=197 Identities=13% Similarity=0.087 Sum_probs=111.7
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~ 749 (953)
.|.||++||+.... ..|.. +.. ...+|.|+.++.. |++.+..........+.|+.+.++.
T Consensus 21 ~~~lv~lhg~~~~~-----------~~~~~----~~~--l~~~~~v~~~d~~---G~~~~~~~~~~~~~~~~~~~~~i~~ 80 (265)
T 3ils_A 21 RKTLFMLPDGGGSA-----------FSYAS----LPR--LKSDTAVVGLNCP---YARDPENMNCTHGAMIESFCNEIRR 80 (265)
T ss_dssp SEEEEEECCTTCCG-----------GGGTT----SCC--CSSSEEEEEEECT---TTTCGGGCCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCH-----------HHHHH----HHh--cCCCCEEEEEECC---CCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 57889999964211 11221 122 3678999996654 4554433333456667776666655
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHH---hCCCcccEEEEcccCCCCCCCCc--------------Cc-------cc
Q 002209 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLA---HAPHLFCCGIARSGAYNRTLTPF--------------GF-------QN 805 (953)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~---~~p~~~~a~v~~~~~~d~~~~~~--------------~~-------~~ 805 (953)
+. ...++.++||||||.+++.++. ..|++++++|++++......... +. ..
T Consensus 81 ~~-----~~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (265)
T 3ils_A 81 RQ-----PRGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAPIPQAMEQLPRAFYEHCNSIGLFATQPGASPDGS 155 (265)
T ss_dssp HC-----SSCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCSSCCCCCCCHHHHHHHHHTTTTTTSSSSCSSSC
T ss_pred hC-----CCCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCCCCCcccccCHHHHHHHHHHHHhCCCccccccCC
Confidence 42 1258999999999999999998 67788999988876432111110 00 00
Q ss_pred ccchhh--h-hHHHHH---hcCcccccCCCCCcEE-EEEeCC---CCCCCC------------chHHHHHHHHHHHhCCC
Q 002209 806 EDRTLW--E-ATSTYV---EMSPFMSANKLKKPIL-LVHGEE---DNNSGT------------LTMQSDRFFNALKGHGA 863 (953)
Q Consensus 806 ~~~~~~--~-~~~~~~---~~sp~~~~~~i~~P~L-i~~G~~---D~~v~~------------~~~~~~~~~~~l~~~g~ 863 (953)
.....+ . -...+. .+.+ .....+++|++ +++|++ |..++. .......+.+.+. +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~P~~lii~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~~ 232 (265)
T 3ils_A 156 TEPPSYLIPHFTAVVDVMLDYKL-APLHARRMPKVGIVWAADTVMDERDAPKMKGMHFMIQKRTEFGPDGWDTIMP--GA 232 (265)
T ss_dssp SCCCTTHHHHHHHHHHHTTTCCC-CCCCCSSCCEEEEEEEEECSSCTTTSCCCSSCCTTTSCCCCCSCTTHHHHST--TC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCCccCCCCeEEEEEccCCCCccccCccccCcchhhccccccCcchHHHhCC--cc
Confidence 000000 0 011111 1111 12346889977 999999 987720 0222233322221 13
Q ss_pred cEEEEEeCCCCccCC-CcccHHHHHHHHHHHH
Q 002209 864 LCRLVILPFESHGYA-ARESIMHVLWETDRWL 894 (953)
Q Consensus 864 ~~~~~~~~~~~H~~~-~~~~~~~~~~~i~~fl 894 (953)
++++++++|+||... ..+....+.+.|.+||
T Consensus 233 ~~~~~~i~gagH~~~~~~e~~~~v~~~i~~fL 264 (265)
T 3ils_A 233 SFDIVRADGANHFTLMQKEHVSIISDLIDRVM 264 (265)
T ss_dssp CEEEEEEEEEETTGGGSTTTTHHHHHHHHHHT
T ss_pred ceeEEEcCCCCcceeeChhhHHHHHHHHHHHh
Confidence 689999999999764 1345555655665554
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.00 E-value=5e-08 Score=104.71 Aligned_cols=228 Identities=10% Similarity=0.015 Sum_probs=122.3
Q ss_pred ceEEEEEcCCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCc
Q 002209 314 TQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392 (953)
Q Consensus 314 ~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~ 392 (953)
..|++++.+|+.+.+... .....++++|||+.++.... ...|.+++.++. .+.+...... .
T Consensus 67 ~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~-------------~~~v~~~~~~g~-~~~~~~~~~~--~-- 128 (305)
T 3dr2_A 67 RRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHG-------------RRAITRSDADGQ-AHLLVGRYAG--K-- 128 (305)
T ss_dssp TEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETT-------------TTEEEEECTTSC-EEEEECEETT--E--
T ss_pred CEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECC-------------CCEEEEECCCCC-EEEEEeccCC--C--
Confidence 467888886665555444 56678899999985544321 136888888743 4444321100 0
Q ss_pred cccccccCccceeeccCCCCceEEEEeccCCC------cccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccC
Q 002209 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGGD------AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466 (953)
Q Consensus 393 ~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~------~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpD 466 (953)
....+..++++|||+ + |+++...+.. ..........||.++. ++++.+.+. .......++|+||
T Consensus 129 ----~~~~~~~i~~d~dG~-l-~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~---~~g~~~~~~-~~~~p~gl~~spd 198 (305)
T 3dr2_A 129 ----RLNSPNDLIVARDGA-I-WFTDPPFGLRKPSQGCPADPELAHHSVYRLPP---DGSPLQRMA-DLDHPNGLAFSPD 198 (305)
T ss_dssp ----ECSCCCCEEECTTSC-E-EEECCSGGGSCGGGSCCCCCSSSCEEEEEECS---SSCCCEEEE-EESSEEEEEECTT
T ss_pred ----ccCCCCCEEECCCCC-E-EEeCcCCCccccccccccccccCCCeEEEEcC---CCCcEEEEe-cCCCCcceEEcCC
Confidence 012345789999997 3 3322100000 0000012357899884 456666665 4444567899999
Q ss_pred CceEEEEEeccc--CceEEEEEcCCCCCC-CcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecC
Q 002209 467 SLALVYESWYKT--RRTRTWVISPGSKDV-APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGN 543 (953)
Q Consensus 467 g~~l~~~~~~~~--~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~ 543 (953)
|+.|+++..... ...+|++++.+++.. ....+.+.......+ +.++++|+ |+...
T Consensus 199 g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdg------i~~d~~G~-lwv~~--------------- 256 (305)
T 3dr2_A 199 EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDG------FCVDRGGW-LWSSS--------------- 256 (305)
T ss_dssp SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCS------EEECTTSC-EEECC---------------
T ss_pred CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCe------EEECCCCC-EEEec---------------
Confidence 999888754320 113788888765310 111121111110011 56677776 22211
Q ss_pred CCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEEC
Q 002209 544 GATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSW 616 (953)
Q Consensus 544 ~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~ 616 (953)
...|++||.+++....+..... + ....|++|++.|+++... .+|.+++
T Consensus 257 -------~~gv~~~~~~g~~~~~~~~~~~------~-------~~~~f~~d~~~L~it~~~-----~l~~~~~ 304 (305)
T 3dr2_A 257 -------GTGVCVFDSDGQLLGHIPTPGT------A-------SNCTFDQAQQRLFITGGP-----CLWMLPL 304 (305)
T ss_dssp -------SSEEEEECTTSCEEEEEECSSC------C-------CEEEECTTSCEEEEEETT-----EEEEEEC
T ss_pred -------CCcEEEECCCCCEEEEEECCCc------e-------eEEEEeCCCCEEEEEcCC-----eEEEEEC
Confidence 1138889986555554443321 1 124577888888776542 5777654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-08 Score=114.74 Aligned_cols=212 Identities=9% Similarity=0.024 Sum_probs=124.1
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccC--CCCCCc------ee
Q 002209 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP--DGKLGQ------EI 180 (953)
Q Consensus 109 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~--~g~~~~------~~ 180 (953)
..+..++|+|||+.|+....+ +.|.+||+.. .+.... .+
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~d---------------------------------g~i~vwd~~~~~~~~~~~~~~~~~i~ 158 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKD---------------------------------GQIIVLKVNHYQQESEVKFLNCECIR 158 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETT---------------------------------SEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCC---------------------------------CEEEEEEeccccCCceeeccccceeE
Confidence 357788999999999988875 3567887731 111000 01
Q ss_pred eeecCC--CCCcccceE--eccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCe
Q 002209 181 EIQGFP--DGAKLNFVT--WSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST 256 (953)
Q Consensus 181 ~l~~~~--~~~~~~~~~--wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~ 256 (953)
.+...+ ....+.... |+|||+.|+... ....|.++|+.+++.......+. ....+..++|+|||+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~ 227 (437)
T 3gre_A 159 KINLKNFGKNEYAVRMRAFVNEEKSLLVALT---------NLSRVIIFDIRTLERLQIIENSP--RHGAVSSICIDEECC 227 (437)
T ss_dssp EEEGGGGSSCCCEEEEEEEECSSCEEEEEEE---------TTSEEEEEETTTCCEEEEEECCG--GGCCEEEEEECTTSC
T ss_pred EEEccCcccccCceEEEEEEcCCCCEEEEEe---------CCCeEEEEeCCCCeeeEEEccCC--CCCceEEEEECCCCC
Confidence 111001 111223333 678898888755 35689999998887654433210 111277899999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeC-CC-C
Q 002209 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIG-PP-A 332 (953)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~-~~-~ 332 (953)
.|+... ..+.|.++|+ +++.. .+. .. .
T Consensus 228 ~l~s~~-------------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~ 258 (437)
T 3gre_A 228 VLILGT-------------------------------------------------TRGIIDIWDIRFNVLIRSWSFGDHA 258 (437)
T ss_dssp EEEEEE-------------------------------------------------TTSCEEEEETTTTEEEEEEBCTTCE
T ss_pred EEEEEc-------------------------------------------------CCCeEEEEEcCCccEEEEEecCCCC
Confidence 998761 2245777788 66543 332 22 4
Q ss_pred ccccc----ccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcc----cCCc-------cccc
Q 002209 333 VYTSL----DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAE----DIPI-------AFNS 396 (953)
Q Consensus 333 ~~~~~----~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~----~~p~-------~~~~ 396 (953)
.+..+ .|+|||+.|+..+.+ +.|.+||+..+. .+.+....... ..|. .+.+
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSK-------------TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG 325 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTT-------------EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred ceEEEEeccccCCCccEEEEEcCC-------------CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecc
Confidence 56666 788899888877633 389999998554 34444322110 0010 0111
Q ss_pred --cccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEec
Q 002209 397 --VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQA 440 (953)
Q Consensus 397 --~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~ 440 (953)
....+..++|+ |++.++.. +..+.|.+|++
T Consensus 326 ~~~~~~v~~l~~~-~~~~l~s~-------------~~d~~i~~wd~ 357 (437)
T 3gre_A 326 IRSLNALSTISVS-NDKILLTD-------------EATSSIVMFSL 357 (437)
T ss_dssp CCSGGGGCCEEEE-TTEEEEEE-------------GGGTEEEEEET
T ss_pred cccCCceEEEEEC-CceEEEec-------------CCCCeEEEEEC
Confidence 23345678888 66544433 44568888886
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.98 E-value=5.4e-08 Score=104.01 Aligned_cols=239 Identities=12% Similarity=0.016 Sum_probs=140.7
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002209 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (953)
Q Consensus 113 ~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~ 192 (953)
.|.|+|++..|.++... . ..|+.++..+ +..+.+. .+ ..+.
T Consensus 17 gp~w~~~~~~l~~~d~~--------------------------~------~~i~~~d~~~----~~~~~~~-~~--~~~~ 57 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIP--------------------------A------KKVCRWDSFT----KQVQRVT-MD--APVS 57 (297)
T ss_dssp EEEEETTTTEEEEEETT--------------------------T------TEEEEEETTT----CCEEEEE-CS--SCEE
T ss_pred CCeEECCCCEEEEEECC--------------------------C------CEEEEEECCC----CcEEEEe-CC--CceE
Confidence 68899998888887652 1 2578888742 3322222 22 3577
Q ss_pred ceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002209 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (953)
Q Consensus 193 ~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 272 (953)
.+.|+|||+ |+... ...|+++|.++++.+.+...........+..++++|||+ |+++........
T Consensus 58 ~i~~~~dG~-l~v~~----------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~--- 122 (297)
T 3g4e_A 58 SVALRQSGG-YVATI----------GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAP--- 122 (297)
T ss_dssp EEEEBTTSS-EEEEE----------TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBT---
T ss_pred EEEECCCCC-EEEEE----------CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCccccc---
Confidence 889999999 43322 347999999988877665432211111245788999998 444411100000
Q ss_pred CCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccCCCCcEEEEEEe
Q 002209 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISSI 351 (953)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~ 351 (953)
.... .....||+++.+|+...+... .....++|||||+.|+++..
T Consensus 123 ---------------------------~~~~-------~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~ 168 (297)
T 3g4e_A 123 ---------------------------AVLE-------RHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDS 168 (297)
T ss_dssp ---------------------------TBCC-------TTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEG
T ss_pred ---------------------------cccc-------CCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecC
Confidence 0000 033578888876666555444 55668899999999877763
Q ss_pred cCCccccccCCCCCcceEEEecc--CceE---EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002209 352 HRPYSFIVPCGRFPRQVGVWTTD--GIFV---RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (953)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~~~d~~--g~~~---~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (953)
. .+.|++++++ ++.. +.+...+.. ...+..+++++||+ |+.. .
T Consensus 169 ~------------~~~i~~~~~d~~~G~~~~~~~~~~~~~~----------~~~p~g~~~d~~G~-lwva-~-------- 216 (297)
T 3g4e_A 169 L------------SYSVDAFDYDLQTGQISNRRSVYKLEKE----------EQIPDGMCIDAEGK-LWVA-C-------- 216 (297)
T ss_dssp G------------GTEEEEEEECTTTCCEEEEEEEEECCGG----------GCEEEEEEEBTTSC-EEEE-E--------
T ss_pred C------------CCcEEEEeccCCCCcccCcEEEEECCCC----------CCCCCeeEECCCCC-EEEE-E--------
Confidence 2 2378899874 3332 222221110 12335688999995 3222 1
Q ss_pred cccccCCeEEEEecCCCCCCCceEEeecccccCCeeec-cCCceEEEEEec
Q 002209 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWC-DDSLALVYESWY 476 (953)
Q Consensus 427 ~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~S-pDg~~l~~~~~~ 476 (953)
...+.|++++. .+|.....+..+...+.+++|+ ||++.|+++...
T Consensus 217 ---~~~~~v~~~d~--~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 217 ---YNGGRVIRLDP--VTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp ---ETTTEEEEECT--TTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred ---cCCCEEEEEcC--CCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 12346888884 2233333444444566788998 899988877643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.97 E-value=5e-08 Score=104.26 Aligned_cols=233 Identities=9% Similarity=0.022 Sum_probs=135.8
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
...|.|+|+++.|+|+.. ....|+++++++++...+.. +.. +..+++++||++++ .
T Consensus 15 ~Egp~w~~~~~~l~~~d~--------~~~~i~~~d~~~~~~~~~~~-~~~-----~~~i~~~~dG~l~v-~--------- 70 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDI--------PAKKVCRWDSFTKQVQRVTM-DAP-----VSSVALRQSGGYVA-T--------- 70 (297)
T ss_dssp EEEEEEETTTTEEEEEET--------TTTEEEEEETTTCCEEEEEC-SSC-----EEEEEEBTTSSEEE-E---------
T ss_pred ccCCeEECCCCEEEEEEC--------CCCEEEEEECCCCcEEEEeC-CCc-----eEEEEECCCCCEEE-E---------
Confidence 346999999989988642 35689999999887654422 221 66889999999444 3
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC------CcccccccCCCC
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP------AVYTSLDPSPDE 343 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~------~~~~~~~~SpDG 343 (953)
....|++++. +|+.+.+... .....++++|||
T Consensus 71 -----------------------------------------~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG 109 (297)
T 3g4e_A 71 -----------------------------------------IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAG 109 (297)
T ss_dssp -----------------------------------------ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTS
T ss_pred -----------------------------------------ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCC
Confidence 1135778888 7766655321 235678899999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
+ |.+.......... ........|+.++.++......... .....++|+|||+.+++. +
T Consensus 110 ~-l~~~~~~~~~~~~-~~~~~~~~l~~~d~~g~~~~~~~~~--------------~~pngi~~spdg~~lyv~-~----- 167 (297)
T 3g4e_A 110 R-YFAGTMAEETAPA-VLERHQGALYSLFPDHHVKKYFDQV--------------DISNGLDWSLDHKIFYYI-D----- 167 (297)
T ss_dssp C-EEEEEEECCSBTT-BCCTTCEEEEEECTTSCEEEEEEEE--------------SBEEEEEECTTSCEEEEE-E-----
T ss_pred C-EEEecCCcccccc-cccCCCcEEEEEECCCCEEEEeecc--------------ccccceEEcCCCCEEEEe-c-----
Confidence 8 4444432210000 0001123677777665433222111 123468999999876554 2
Q ss_pred CcccccccCCeEEEEecCCCCCCCc---eEEee---cccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEE
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGP---EILHK---LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~---~~l~~---~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 497 (953)
...+.|+++++++.+ +.. +.+.. ......++++++||+ |+.+.+.. . +|++++++++ +...
T Consensus 168 ------~~~~~i~~~~~d~~~-G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~-~--~v~~~d~~tG--~~~~ 234 (297)
T 3g4e_A 168 ------SLSYSVDAFDYDLQT-GQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNG-G--RVIRLDPVTG--KRLQ 234 (297)
T ss_dssp ------GGGTEEEEEEECTTT-CCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETT-T--EEEEECTTTC--CEEE
T ss_pred ------CCCCcEEEEeccCCC-CcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCC-C--EEEEEcCCCc--eEEE
Confidence 224578888752223 332 22222 223456789999995 55554433 2 6999999865 3222
Q ss_pred eecCCCccccCCCCCCCeEec-cCCCEEEEEee
Q 002209 498 LFDRSSEDVYSDPGSPMMRRT-STGTYVIAKIK 529 (953)
Q Consensus 498 ~~~~~~~~~~~~~~~p~~~~S-pDG~~l~~~~~ 529 (953)
....+...+.+ +.|+ ||+++|+....
T Consensus 235 ~i~~p~~~~t~------~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 235 TVKLPVDKTTS------CCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEECSSSBEEE------EEEESGGGCEEEEEEB
T ss_pred EEECCCCCceE------EEEeCCCCCEEEEEcC
Confidence 22222222222 6787 88888877764
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-08 Score=114.00 Aligned_cols=212 Identities=11% Similarity=0.011 Sum_probs=124.7
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH------cCcEEEEcCCC
Q 002209 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA------RGFAILGGPTT 721 (953)
Q Consensus 648 dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~------~G~~V~~~~~~ 721 (953)
+|..|+.....+.. ...|.||++||++... ..+. .....|++ .||.|+++
T Consensus 93 ~g~~i~~~~~~~~~------~~~~pllllHG~~~s~--------------~~~~-~~~~~L~~~~~~~~~gf~vv~~--- 148 (408)
T 3g02_A 93 EGLTIHFAALFSER------EDAVPIALLHGWPGSF--------------VEFY-PILQLFREEYTPETLPFHLVVP--- 148 (408)
T ss_dssp TTEEEEEEEECCSC------TTCEEEEEECCSSCCG--------------GGGH-HHHHHHHHHCCTTTCCEEEEEE---
T ss_pred CCEEEEEEEecCCC------CCCCeEEEECCCCCcH--------------HHHH-HHHHHHhcccccccCceEEEEE---
Confidence 89999988876532 1256789999975221 1111 23445666 58999994
Q ss_pred CCCCCCChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCC-cEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC
Q 002209 722 PIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPS-KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (953)
Q Consensus 722 ~~~G~G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~-~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~ 796 (953)
+..|+|.|.... ........|+.+.++.+ + .+ ++.++||||||.+++.++.++|+++...+.++++...
T Consensus 149 DlpG~G~S~~~~~~~~~~~~~~a~~~~~l~~~l---g---~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~~~~ 222 (408)
T 3g02_A 149 SLPGYTFSSGPPLDKDFGLMDNARVVDQLMKDL---G---FGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNMSAP 222 (408)
T ss_dssp CCTTSTTSCCSCSSSCCCHHHHHHHHHHHHHHT---T---CTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh---C---CCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCCCCC
Confidence 556777775432 22445555555554432 2 33 8999999999999999999997755555544433221
Q ss_pred CCCC--cCcccc---------------cc----------h---------------------hhhh-----H---------
Q 002209 797 TLTP--FGFQNE---------------DR----------T---------------------LWEA-----T--------- 814 (953)
Q Consensus 797 ~~~~--~~~~~~---------------~~----------~---------------------~~~~-----~--------- 814 (953)
.... ..+... .. + .|.+ .
T Consensus 223 ~~~~~~~~l~~~e~~~~~~~~~~~~~~~~y~~~~~t~p~tl~~~l~dsP~gl~awi~ek~~~w~d~~~~~d~ll~~v~~y 302 (408)
T 3g02_A 223 PEGPSIESLSAAEKEGIARMEKFMTDGYAYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSLY 302 (408)
T ss_dssp TTCCCGGGSCHHHHHHHHHHHHHHHHSCHHHHHHHHCHHHHHHHHHSCHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHH
T ss_pred cccccccCCCHHHHHHHHHHHHHHHhCcchhhhhcCcHHHHHHHHhcChHHHHhhhhhhhhhccCCCCCHHHHHHHHHHH
Confidence 1000 000000 00 0 0000 0
Q ss_pred ----------HHHHhc-Cc--cc-------ccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 002209 815 ----------STYVEM-SP--FM-------SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874 (953)
Q Consensus 815 ----------~~~~~~-sp--~~-------~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 874 (953)
..|.+. .. .. .+..+++|+++++|..|...+ +.. +.+.. ..-+.+..++++|
T Consensus 303 ~~t~~~~~s~~~y~e~~~~~~~~~~~~~~~~l~~i~vPt~v~~~~~D~~~~--p~~---~~~~~---~~~~~~~~~~~gG 374 (408)
T 3g02_A 303 WLTESFPRAIHTYREWVPTASAPNGATPYQKELYIHKPFGFSFFPKDLVPV--PRS---WIATT---GNLVFFRDHAEGG 374 (408)
T ss_dssp HHTTHHHHHGGGHHHHTTC-------CTTTTTTCEEEEEEEEECTBSSSCC--CHH---HHGGG---EEEEEEEECSSCB
T ss_pred HhhccchhHHHHHHhhcccccccccccccccCCCcCCCEEEEeCCcccccC--cHH---HHHhc---CCeeEEEECCCCc
Confidence 000000 00 00 234568899999999997654 442 22222 2236788999999
Q ss_pred ccCCCcccHHHHHHHHHHHHHHhc
Q 002209 875 HGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 875 H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
|.. ..+..+.+.+.+.+||.+.-
T Consensus 375 Hf~-~lE~Pe~~~~~l~~fl~~~~ 397 (408)
T 3g02_A 375 HFA-ALERPRELKTDLTAFVEQVW 397 (408)
T ss_dssp SCH-HHHCHHHHHHHHHHHHHHHC
T ss_pred Cch-hhhCHHHHHHHHHHHHHHHH
Confidence 975 46788899999999998754
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-09 Score=114.93 Aligned_cols=210 Identities=13% Similarity=-0.054 Sum_probs=119.2
Q ss_pred CcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCC
Q 002209 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGD 728 (953)
Q Consensus 649 g~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~ 728 (953)
+..+...++.|.++..+. .+.||++||..... .. .+.......|+++||.|+.+++ .|+|.
T Consensus 13 ~~~l~~~i~~p~~~~~~~---~~~VvllHG~~~~~-----------~~--~~~~~l~~~L~~~G~~v~~~d~---~g~g~ 73 (317)
T 1tca_A 13 KSVLDAGLTCQGASPSSV---SKPILLVPGTGTTG-----------PQ--SFDSNWIPLSTQLGYTPCWISP---PPFML 73 (317)
T ss_dssp HHHHHHTEEETTBCTTSC---SSEEEEECCTTCCH-----------HH--HHTTTHHHHHHTTTCEEEEECC---TTTTC
T ss_pred HHHHhheeeCCCCCCCCC---CCeEEEECCCCCCc-----------ch--hhHHHHHHHHHhCCCEEEEECC---CCCCC
Confidence 344566678887764322 45689999953110 00 0111345667788999999655 45554
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC---CcccEEEEcccCCCCCCCC-----
Q 002209 729 EEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGAYNRTLTP----- 800 (953)
Q Consensus 729 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~~d~~~~~----- 800 (953)
+. ......++.+.++++.+... .+++.|+||||||.++.+++.+.| ++++++|++++........
T Consensus 74 ~~-----~~~~~~~l~~~i~~~~~~~g--~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~g~~~~~~~~~ 146 (317)
T 1tca_A 74 ND-----TQVNTEYMVNAITALYAGSG--NNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLDA 146 (317)
T ss_dssp SC-----HHHHHHHHHHHHHHHHHHTT--SCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBGGGHHHHH
T ss_pred Cc-----HHHHHHHHHHHHHHHHHHhC--CCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCCCCcchhhhhh
Confidence 32 12345677777887776532 368999999999999999988775 7899999999865422110
Q ss_pred cCcccc----cchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHH--HHHHHHHHHhCCCcEEEEEe----
Q 002209 801 FGFQNE----DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQ--SDRFFNALKGHGALCRLVIL---- 870 (953)
Q Consensus 801 ~~~~~~----~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~--~~~~~~~l~~~g~~~~~~~~---- 870 (953)
+.+... ......-...+.... ....+.|+++++|..|.+|+ +.. +......+. +. +.+..
T Consensus 147 ~~~~~~~~~~~~~~s~f~~~L~~~~----~~~~~vp~~~i~g~~D~iV~--p~~~~g~~~~~~l~--~a--~~~~~~~~~ 216 (317)
T 1tca_A 147 LAVSAPSVWQQTTGSALTTALRNAG----GLTQIVPTTNLYSATDEIVQ--PQVSNSPLDSSYLF--NG--KNVQAQAVC 216 (317)
T ss_dssp TTCBCHHHHHTBTTCHHHHHHHHTT----TTBCSSCEEEEECTTCSSSC--CCCSSSTTSTTCCB--TS--EEEEHHHHH
T ss_pred hhhcCchHHhhCcCcHHHHHHHhcC----CCCCCCCEEEEEeCCCCeEC--Cccccccchhhhcc--CC--ccEEeeecc
Confidence 000000 000000011111110 01246899999999999997 554 111111111 11 22222
Q ss_pred ---CCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 871 ---PFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 871 ---~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
++.+|... ..+ ..++..+.+||+.
T Consensus 217 ~~~~~~gH~~~-l~~-p~~~~~v~~~L~~ 243 (317)
T 1tca_A 217 GPLFVIDHAGS-LTS-QFSYVVGRSALRS 243 (317)
T ss_dssp CTTCCCCTTHH-HHB-HHHHHHHHHHHHC
T ss_pred CCCCccCcccc-cCC-HHHHHHHHHHhcC
Confidence 57789642 222 3456777888764
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-07 Score=102.07 Aligned_cols=227 Identities=9% Similarity=0.020 Sum_probs=133.7
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
...|.|+||++.|+++.. ....|++++.++++.+.+.. +.. +..+.|+|||++++..
T Consensus 51 ~egp~~~~~~~~l~~~d~--------~~~~i~~~d~~~~~~~~~~~-~~~-----v~~i~~~~dg~l~v~~--------- 107 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNI--------LERELHELHLASGRKTVHAL-PFM-----GSALAKISDSKQLIAS--------- 107 (326)
T ss_dssp EEEEEEETTTTEEEEEEG--------GGTEEEEEETTTTEEEEEEC-SSC-----EEEEEEEETTEEEEEE---------
T ss_pred CcCCeEeCCCCEEEEEEC--------CCCEEEEEECCCCcEEEEEC-CCc-----ceEEEEeCCCeEEEEE---------
Confidence 356999999988988643 24689999999887665432 221 6688899999877643
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC------CcccccccCCCC
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP------AVYTSLDPSPDE 343 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~------~~~~~~~~SpDG 343 (953)
...|++++. +|+.+.+... ..+..+.++|||
T Consensus 108 ------------------------------------------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G 145 (326)
T 2ghs_A 108 ------------------------------------------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG 145 (326)
T ss_dssp ------------------------------------------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS
T ss_pred ------------------------------------------CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC
Confidence 124888888 7876665432 235678999999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
+. ++....... ......|+.++ + +..+.+.... .....++|+|||+.+++. +
T Consensus 146 ~l-~v~~~~~~~------~~~~~~l~~~~-~-g~~~~~~~~~-------------~~~~~i~~s~dg~~lyv~-~----- 197 (326)
T 2ghs_A 146 AL-WIGTMGRKA------ETGAGSIYHVA-K-GKVTKLFADI-------------SIPNSICFSPDGTTGYFV-D----- 197 (326)
T ss_dssp CE-EEEEEETTC------CTTCEEEEEEE-T-TEEEEEEEEE-------------SSEEEEEECTTSCEEEEE-E-----
T ss_pred CE-EEEeCCCcC------CCCceEEEEEe-C-CcEEEeeCCC-------------cccCCeEEcCCCCEEEEE-E-----
Confidence 84 444322100 01123688887 4 4444443210 122468999999877665 1
Q ss_pred CcccccccCCeEEEEecCCCCC-C--CceEEee---cccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEE
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQG-E--GPEILHK---LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g-~--~~~~l~~---~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 497 (953)
...+.|+++++++.+| . ..+.+.. ......++.+++||+ |+++.... ..|+++++++ +...
T Consensus 198 ------~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~---~~v~~~d~~g---~~~~ 264 (326)
T 2ghs_A 198 ------TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGE---GAVDRYDTDG---NHIA 264 (326)
T ss_dssp ------TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETT---TEEEEECTTC---CEEE
T ss_pred ------CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCC---CEEEEECCCC---CEEE
Confidence 2245788998621122 1 1223322 123345688999996 44443322 2688999854 2222
Q ss_pred eecCCCccccCCCCCCCeEec-cCCCEEEEEee
Q 002209 498 LFDRSSEDVYSDPGSPMMRRT-STGTYVIAKIK 529 (953)
Q Consensus 498 ~~~~~~~~~~~~~~~p~~~~S-pDG~~l~~~~~ 529 (953)
....+...+.+ ++|+ +|++.|+....
T Consensus 265 ~i~~~~~~~~~------~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 265 RYEVPGKQTTC------PAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEECSCSBEEE------EEEESTTSCEEEEEEB
T ss_pred EEECCCCCcEE------EEEecCCCCEEEEEec
Confidence 22222222222 6787 88888766653
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-09 Score=125.27 Aligned_cols=132 Identities=19% Similarity=0.177 Sum_probs=90.4
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCcEEEEcCCC-CC
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTT-PI 723 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~-~~ 723 (953)
+.|.. ...+|.|.....+ .++|+||++|||.+..+.. ..+. . ..|+ ..|++|+.++|+ +.
T Consensus 95 ~edcl--~lnv~~P~~~~~~--~~~Pv~v~iHGG~~~~g~~--------~~~~---~---~~la~~~g~vvv~~nYRlg~ 156 (542)
T 2h7c_A 95 SEDCL--YLNIYTPADLTKK--NRLPVMVWIHGGGLMVGAA--------STYD---G---LALAAHENVVVVTIQYRLGI 156 (542)
T ss_dssp ESCCC--EEEEEECSCTTSC--CCEEEEEEECCSTTTSCCS--------TTSC---C---HHHHHHHTCEEEEECCCCHH
T ss_pred CCCCc--EEEEEECCCCCCC--CCCCEEEEECCCcccCCCc--------cccC---H---HHHHhcCCEEEEecCCCCcc
Confidence 45654 4568889764332 3599999999987554322 1121 1 1345 489999998887 33
Q ss_pred CCCCChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh--CCCcccEEEEcccCCC
Q 002209 724 IGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAYN 795 (953)
Q Consensus 724 ~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~d 795 (953)
.|++............+.|+.++++|+.++ ...|+++|.|+|+|+||.++..++.. .+.+|+++|+.+|...
T Consensus 157 ~gf~~~~~~~~~~n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~ 233 (542)
T 2h7c_A 157 WGFFSTGDEHSRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVAL 233 (542)
T ss_dssp HHHCCCSSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred ccCCCCCcccCccchhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCcc
Confidence 333322111111234478999999999875 34799999999999999999999886 3578999999998754
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4.7e-08 Score=109.15 Aligned_cols=240 Identities=10% Similarity=0.054 Sum_probs=116.8
Q ss_pred cceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceee--cccCCCccccccccceEEec--------CCeEEEEE
Q 002209 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP--LFQSPDIYLNAIFDNFVWVN--------NSTLLVCT 261 (953)
Q Consensus 192 ~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~--lt~~~~~~~~~~~~~~~wsp--------Dg~~l~~~ 261 (953)
....++++++.|+... . ...|.++|+++++... +.. ...++...+..++|+| ||+.|+..
T Consensus 93 ~~~~~~~~~~~las~~-------~--d~~v~lw~~~~~~~~~~~~~~-~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~ 162 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVC-------Q--DNTVRLIITKNETIITQHVLG-GKSGHHNFVNDIDIADVYSADNRLAEQVIASV 162 (393)
T ss_dssp ----CCEEEEEEEEEE-------T--TSCEEEEEEETTEEEEEEEEC-TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred ceeecCCCCCEEEEEe-------C--CCcEEEEECCCCccceeeeec-ccCCCCCceEEEEEccccccccCCCCCEEEEE
Confidence 3345667777777754 2 4456666666665422 111 0011222378999998 89988866
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC-Ccccccc
Q 002209 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLD 338 (953)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~ 338 (953)
. ....+.++|+ ++ ....+... ..+.+++
T Consensus 163 s-------------------------------------------------~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~ 193 (393)
T 4gq1_A 163 G-------------------------------------------------DDCTLIIWRLTDEGPILAGYPLSSPGISVQ 193 (393)
T ss_dssp E-------------------------------------------------TTSEEEEEEEETTEEEEEEEECSSCEEEEE
T ss_pred E-------------------------------------------------CCCeEEEEECCCCceeeeecCCCCCcEEEE
Confidence 1 1134555666 44 33333333 6778899
Q ss_pred cCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCccc--------CCc----cccccccCcccee
Q 002209 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAED--------IPI----AFNSVRKGMRSIN 405 (953)
Q Consensus 339 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~--------~p~----~~~~~~~~~~~~~ 405 (953)
|+|++..++++... .+.|.+||+..+... .+........ .+. ...+....+..+.
T Consensus 194 ~~p~~~~~l~~~~~------------d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~ 261 (393)
T 4gq1_A 194 FRPSNPNQLIVGER------------NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVR 261 (393)
T ss_dssp EETTEEEEEEEEET------------TSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEE
T ss_pred ECCCCCceEEecCC------------CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeee
Confidence 99999754444322 248999999854322 2111110000 000 0112233455677
Q ss_pred ec-cCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccc------------------cCCeeecc-
Q 002209 406 WR-SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLR------------------YGGISWCD- 465 (953)
Q Consensus 406 ws-pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~------------------~~~~~~Sp- 465 (953)
|+ |||+.|+-. .....+.+||+ ..+.....+...... .....|+|
T Consensus 262 ~~~~dg~~l~s~-------------s~d~~i~vwd~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 262 WIGSDGSGILAM-------------CKSGAWLRWNL--FANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp EETTTTCEEEEE-------------CTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred eecCCCCEEEEE-------------eCCCCEEEEEC--ccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 76 899876654 34556777775 222211222111111 11223443
Q ss_pred CCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.++.++.+...+ + .|+++|..++. ...... .....+.. ++|||||++|+...
T Consensus 327 ~~~~~~~sgs~D-g--~V~lwd~~~~~-~~~~~~-~~~~~V~s------vafspdG~~LA~as 378 (393)
T 4gq1_A 327 YMDYFATAHSQH-G--LIQLINTYEKD-SNSIPI-QLGMPIVD------FCWHQDGSHLAIAT 378 (393)
T ss_dssp CTTEEEEEETTT-T--EEEEEETTCTT-CCEEEE-ECSSCEEE------EEECTTSSEEEEEE
T ss_pred CCCEEEEEECCC-C--EEEEEECCCCc-EEEEec-CCCCcEEE------EEEcCCCCEEEEEe
Confidence 334444433322 2 56666776652 222222 22223333 89999999999876
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.4e-07 Score=105.01 Aligned_cols=220 Identities=18% Similarity=0.189 Sum_probs=131.0
Q ss_pred ceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCcccc
Q 002209 114 LSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNF 193 (953)
Q Consensus 114 ~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~ 193 (953)
..+++||++|+....+ +.|.+||+.+ + .....+.++ ...+..
T Consensus 137 ~~~~~d~~~l~~g~~d---------------------------------g~i~iwd~~~-~--~~~~~~~~h--~~~v~~ 178 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRD---------------------------------NTIKIWDKNT-L--ECKRILTGH--TGSVLC 178 (435)
T ss_dssp EEEECCSSEEEEEESS---------------------------------SCEEEEESSS-C--CEEEEECCC--SSCEEE
T ss_pred EEEEECCCEEEEEeCC---------------------------------CeEEEEeCCC-C--eEEEEEcCC--CCcEEE
Confidence 3678899999888775 3689999853 2 222333332 235666
Q ss_pred eEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCC
Q 002209 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (953)
Q Consensus 194 ~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 273 (953)
..| ||+.|+... .+..|.++|+++++........... +..+.|++ ..|+...
T Consensus 179 l~~--~~~~l~sg~---------~dg~i~vwd~~~~~~~~~~~~h~~~----v~~l~~~~--~~l~s~s----------- 230 (435)
T 1p22_A 179 LQY--DERVIITGS---------SDSTVRVWDVNTGEMLNTLIHHCEA----VLHLRFNN--GMMVTCS----------- 230 (435)
T ss_dssp EEC--CSSEEEEEE---------TTSCEEEEESSSCCEEEEECCCCSC----EEEEECCT--TEEEEEE-----------
T ss_pred EEE--CCCEEEEEc---------CCCeEEEEECCCCcEEEEEcCCCCc----EEEEEEcC--CEEEEee-----------
Confidence 766 888887754 3567888899888765443322222 66777763 3555441
Q ss_pred CCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce----eEeCCC-CcccccccCCCCcEEE
Q 002209 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV----KEIGPP-AVYTSLDPSPDEKYIL 347 (953)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~----~~l~~~-~~~~~~~~SpDG~~l~ 347 (953)
..+.|.++|+ ++.. ..+... ..+..+.| ||++|+
T Consensus 231 --------------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~ 270 (435)
T 1p22_A 231 --------------------------------------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIV 270 (435)
T ss_dssp --------------------------------------TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEE
T ss_pred --------------------------------------CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEE
Confidence 2245667777 5532 233333 56666666 899998
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (953)
..+.++ .|.+||+..++ ...+..+. ..+..+.| +++.++..
T Consensus 271 s~~~dg-------------~i~vwd~~~~~~~~~~~~~~-------------~~v~~~~~--~~~~l~~g---------- 312 (435)
T 1p22_A 271 SASGDR-------------TIKVWNTSTCEFVRTLNGHK-------------RGIACLQY--RDRLVVSG---------- 312 (435)
T ss_dssp EEETTS-------------EEEEEETTTCCEEEEEECCS-------------SCEEEEEE--ETTEEEEE----------
T ss_pred EEeCCC-------------eEEEEECCcCcEEEEEcCCC-------------CcEEEEEe--CCCEEEEE----------
Confidence 887443 89999998554 33343321 22334555 45544443
Q ss_pred cccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEE
Q 002209 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (953)
Q Consensus 427 ~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~ 486 (953)
+..+.|.+||+ .++.....+..+...+..+.| |++.|+.++.++. .++|.+
T Consensus 313 ---~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~--i~vwd~ 363 (435)
T 1p22_A 313 ---SSDNTIRLWDI--ECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK--IKVWDL 363 (435)
T ss_dssp ---ETTSCEEEEET--TTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC--EEEEEH
T ss_pred ---eCCCeEEEEEC--CCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc--EEEEEC
Confidence 34567899996 233333345555555666777 8888887765432 355544
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3.8e-09 Score=120.80 Aligned_cols=132 Identities=20% Similarity=0.183 Sum_probs=90.3
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcC-cEEEEcCCCC-C
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG-FAILGGPTTP-I 723 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G-~~V~~~~~~~-~ 723 (953)
+.|.. ...+|.|.. . ..++|+||++|||.+..+... ... .....|+++| ++|+.++|+- .
T Consensus 81 ~edcl--~l~v~~P~~--~--~~~~Pviv~iHGGg~~~g~~~--------~~~----~~~~~la~~~~~vvv~~nYRlg~ 142 (498)
T 2ogt_A 81 SEDGL--YLNIWSPAA--D--GKKRPVLFWIHGGAFLFGSGS--------SPW----YDGTAFAKHGDVVVVTINYRMNV 142 (498)
T ss_dssp BSCCC--EEEEEESCS--S--SCCEEEEEEECCSTTTSCCTT--------CGG----GCCHHHHHHHTCEEEEECCCCHH
T ss_pred CCCCc--EEEEEecCC--C--CCCCcEEEEEcCCccCCCCCC--------CCc----CCHHHHHhCCCEEEEeCCCcCch
Confidence 45554 446778862 2 235999999999865433221 110 1124667766 9999988872 2
Q ss_pred CCCCChhh-----hhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccC
Q 002209 724 IGEGDEEA-----NDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGA 793 (953)
Q Consensus 724 ~G~G~~~~-----~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~ 793 (953)
.|++.... ....+...+.|+.++++|+.++ ...|+++|.|+|+|+||.+++.++... ..+|+++|+.+|.
T Consensus 143 ~Gf~~~~~~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~ 222 (498)
T 2ogt_A 143 FGFLHLGDSFGEAYAQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGS 222 (498)
T ss_dssp HHCCCCTTTTCGGGTTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCC
T ss_pred hhccCchhhccccccCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCC
Confidence 24333211 1223456789999999999876 236899999999999999999888753 3579999999997
Q ss_pred CC
Q 002209 794 YN 795 (953)
Q Consensus 794 ~d 795 (953)
..
T Consensus 223 ~~ 224 (498)
T 2ogt_A 223 GS 224 (498)
T ss_dssp TT
T ss_pred cc
Confidence 65
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3.8e-09 Score=109.23 Aligned_cols=169 Identities=14% Similarity=0.137 Sum_probs=89.8
Q ss_pred HcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEEEeChHHHHHHHHHHh------CCC
Q 002209 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVA-HPSKIAVGGHSYGAFMTANLLAH------APH 782 (953)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~-d~~~i~l~G~S~GG~~a~~~a~~------~p~ 782 (953)
+.+|.|++ .+..|+|.+... ...|+.+.++.+.+.-.+ ..+++.|+||||||.+|+.+|.+ +|+
T Consensus 37 ~~~~~vi~---~Dl~GhG~S~~~------~~~~~~~~~~~~~~~l~~~~~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~ 107 (242)
T 2k2q_B 37 QGECEMLA---AEPPGHGTNQTS------AIEDLEELTDLYKQELNLRPDRPFVLFGHSMGGMITFRLAQKLEREGIFPQ 107 (242)
T ss_dssp CCSCCCEE---EECCSSCCSCCC------TTTHHHHHHHHTTTTCCCCCCSSCEEECCSSCCHHHHHHHHHHHHHHCSSC
T ss_pred CCCeEEEE---EeCCCCCCCCCC------CcCCHHHHHHHHHHHHHhhcCCCEEEEeCCHhHHHHHHHHHHHHHcCCCCC
Confidence 45799999 455788877432 123445555544432112 12589999999999999999986 566
Q ss_pred cccEEEEcccCCCCCC-CCc----------Ccccccchhhhh-----------HHHHH---hcCcccccCCCCCcEEEEE
Q 002209 783 LFCCGIARSGAYNRTL-TPF----------GFQNEDRTLWEA-----------TSTYV---EMSPFMSANKLKKPILLVH 837 (953)
Q Consensus 783 ~~~a~v~~~~~~d~~~-~~~----------~~~~~~~~~~~~-----------~~~~~---~~sp~~~~~~i~~P~Li~~ 837 (953)
.+-......+...... ... ...........+ ...+. .+.. ..+.++++|+|+++
T Consensus 108 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~i~~P~lvi~ 186 (242)
T 2k2q_B 108 AVIISAIQPPHIQRKKVSHLPDDQFLDHIIQLGGMPAELVENKEVMSFFLPSFRSDYRALEQFEL-YDLAQIQSPVHVFN 186 (242)
T ss_dssp SEEEEEEECSCCCSCCCSSCTTHHHHHTTCCTTCCCCTTTHHHHTTTTCCSCHHHHHHHHTCCCC-SCCTTCCCSEEEEE
T ss_pred EEEEECCCCCCCCcccccCCCHHHHHHHHHHhCCCChHHhcCHHHHHHHHHHHHHHHHHHHhccc-CCCCccCCCEEEEe
Confidence 5321111111111000 000 000000000000 01111 1111 12567899999999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
|++|..++ .....+ +..-...+++++++ ||... .+..+.+.+.+.+||.+.
T Consensus 187 G~~D~~~~---~~~~~~----~~~~~~~~~~~~~~-gH~~~-~e~p~~~~~~i~~fl~~~ 237 (242)
T 2k2q_B 187 GLDDKKCI---RDAEGW----KKWAKDITFHQFDG-GHMFL-LSQTEEVAERIFAILNQH 237 (242)
T ss_dssp ECSSCCHH---HHHHHH----HTTCCCSEEEEEEC-CCSHH-HHHCHHHHHHHHHHHHTT
T ss_pred eCCCCcCH---HHHHHH----HHHhcCCeEEEEeC-CceeE-cCCHHHHHHHHHHHhhcc
Confidence 99998743 333332 22212234777886 99753 455567788888888653
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=98.83 E-value=3.4e-08 Score=104.01 Aligned_cols=86 Identities=14% Similarity=0.125 Sum_probs=56.5
Q ss_pred HHHHHHHc--CcEEEEcCCCCCCCCCChhhh-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002209 704 SVLLWLAR--GFAILGGPTTPIIGEGDEEAN-DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 704 ~~~~la~~--G~~V~~~~~~~~~G~G~~~~~-~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
....|++. ||.|+++ +. |+|.+... ..+......++...++.+...... .+++.++||||||.++..++.++
T Consensus 27 ~~~~L~~~~~g~~v~~~---d~-G~g~s~~~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~lvGhSmGG~ia~~~a~~~ 101 (279)
T 1ei9_A 27 IKKMVEKKIPGIHVLSL---EI-GKTLREDVENSFFLNVNSQVTTVCQILAKDPKL-QQGYNAMGFSQGGQFLRAVAQRC 101 (279)
T ss_dssp HHHHHHHHSTTCCEEEC---CC-SSSHHHHHHHHHHSCHHHHHHHHHHHHHSCGGG-TTCEEEEEETTHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCcEEEEE---Ee-CCCCccccccccccCHHHHHHHHHHHHHhhhhc-cCCEEEEEECHHHHHHHHHHHHc
Confidence 44556654 8899994 43 77765321 122222334444445555432212 26899999999999999999999
Q ss_pred CC-cccEEEEcccCC
Q 002209 781 PH-LFCCGIARSGAY 794 (953)
Q Consensus 781 p~-~~~a~v~~~~~~ 794 (953)
|+ .++.+|++++..
T Consensus 102 ~~~~v~~lv~~~~p~ 116 (279)
T 1ei9_A 102 PSPPMVNLISVGGQH 116 (279)
T ss_dssp CSSCEEEEEEESCCT
T ss_pred CCcccceEEEecCcc
Confidence 98 499999887643
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=98.81 E-value=2.8e-09 Score=123.28 Aligned_cols=132 Identities=19% Similarity=0.196 Sum_probs=88.6
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEEcCCC-CC
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTT-PI 723 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~-~~ 723 (953)
+.|... ..+|.|... + +.++|+||++|||.+..+..... .+ ....|++ .|++|+.++|+ +.
T Consensus 93 ~edcl~--l~v~~P~~~-~--~~~~Pviv~iHGGg~~~g~~~~~------~~------~~~~la~~~g~vvv~~nYRlg~ 155 (543)
T 2ha2_A 93 SEDCLY--LNVWTPYPR-P--ASPTPVLIWIYGGGFYSGAASLD------VY------DGRFLAQVEGAVLVSMNYRVGT 155 (543)
T ss_dssp ESCCCE--EEEEEESSC-C--SSCEEEEEEECCSTTTCCCTTSG------GG------CTHHHHHHHCCEEEEECCCCHH
T ss_pred CCcCCe--EEEeecCCC-C--CCCCeEEEEECCCccccCCCCCC------cC------ChHHHHhcCCEEEEEecccccc
Confidence 456644 466778642 2 23589999999986544322100 01 1235565 79999998887 22
Q ss_pred CCCCChh-hhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccCC
Q 002209 724 IGEGDEE-ANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAY 794 (953)
Q Consensus 724 ~G~G~~~-~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~ 794 (953)
.|++... .....+...+.|+.++++|+.++ ...|+++|.|+|+|+||.+++.++... +.+|+++|+.+|..
T Consensus 156 ~Gf~~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 232 (543)
T 2ha2_A 156 FGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (543)
T ss_dssp HHHCCCTTCSSCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred cccccCCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence 3433221 11112245689999999999875 237999999999999999998887653 36899999999854
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=98.81 E-value=5.5e-09 Score=117.22 Aligned_cols=160 Identities=11% Similarity=-0.070 Sum_probs=102.7
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEEcCCCCCCCCCChhhh--hhhHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~~ 746 (953)
.|+||++||.... ....+.......|++ .||.|+.+|. +|+|.+... .........|+.++
T Consensus 70 ~~~vvllHG~~~s-------------~~~~w~~~~~~~l~~~~~~~Vi~~D~---~g~g~s~~~~~~~~~~~~~~dl~~~ 133 (432)
T 1gpl_A 70 RKTRFIIHGFTDS-------------GENSWLSDMCKNMFQVEKVNCICVDW---KGGSKAQYSQASQNIRVVGAEVAYL 133 (432)
T ss_dssp SEEEEEECCTTCC-------------TTSHHHHHHHHHHHHHCCEEEEEEEC---HHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCC-------------CCchHHHHHHHHHHhcCCcEEEEEEC---ccccCccchhhHhhHHHHHHHHHHH
Confidence 6899999995311 001111113445665 7999999554 566654322 12235567888999
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCccccc
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSA 826 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 826 (953)
+++|.++..++.+++.|+||||||.+|+.++.++|+++++++.++|..-..... ++...+
T Consensus 134 i~~l~~~~g~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~p~~~~~--------------------~~~~~l 193 (432)
T 1gpl_A 134 VQVLSTSLNYAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAEPYFQDT--------------------PEEVRL 193 (432)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBCTTTTTC--------------------CTTTSC
T ss_pred HHHHHHhcCCCcccEEEEEeCHHHHHHHHHHHhcccccceeEEeccccccccCC--------------------Chhhcc
Confidence 999976544567899999999999999999999999999999887753211000 000000
Q ss_pred -CCCCCcEEEEEeCCCCCCCCch---HHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002209 827 -NKLKKPILLVHGEEDNNSGTLT---MQSDRFFNALKGHGALCRLVILPFESHGY 877 (953)
Q Consensus 827 -~~i~~P~Li~~G~~D~~v~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (953)
.....++.++||..|.+|| . ..... . ..+..||+.||..
T Consensus 194 ~~~da~~V~vIHt~~d~lVP--~~~~g~~~~-------l---g~~dfypngg~~q 236 (432)
T 1gpl_A 194 DPSDAKFVDVIHTDISPILP--SLGFGMSQK-------V---GHMDFFPNGGKDM 236 (432)
T ss_dssp CGGGSSEEEEECSCCSCHHH--HCCCBCSSC-------C---SSEEEEEGGGSSC
T ss_pred CcCCCceEEEEEcCCccccc--ccccccccc-------c---cceEEccCCCCCC
Confidence 1223589999999999886 4 11111 1 2455689989954
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=98.75 E-value=8.2e-09 Score=119.08 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=88.8
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEEcCCCC-C
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTP-I 723 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~-~ 723 (953)
+.|. +...+|.|.... .++|+||++|||.+..+... .. .+ ....|++ .|++|+.++|+- .
T Consensus 89 ~edc--l~lnv~~P~~~~----~~~Pv~v~iHGGg~~~g~~~--------~~-~~---~~~~la~~~~~vvv~~nYRlg~ 150 (529)
T 1p0i_A 89 SEDC--LYLNVWIPAPKP----KNATVLIWIYGGGFQTGTSS--------LH-VY---DGKFLARVERVIVVSMNYRVGA 150 (529)
T ss_dssp CSCC--CEEEEEEESSCC----SSEEEEEEECCSTTTSCCTT--------CG-GG---CTHHHHHHHCCEEEEECCCCHH
T ss_pred CCcC--CeEEEeeCCCCC----CCCeEEEEECCCccccCCCC--------cc-cc---ChHHHhccCCeEEEEecccccc
Confidence 3455 445677886521 35899999999865443221 10 00 1235565 799999988862 2
Q ss_pred CCCCCh-hhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccCCC
Q 002209 724 IGEGDE-EANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (953)
Q Consensus 724 ~G~G~~-~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~d 795 (953)
.|+... ......+...+.|+.++++|+.++ ...|+++|.|+|+|+||.+++.++... ..+|+++|+.+|...
T Consensus 151 ~Gf~~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 228 (529)
T 1p0i_A 151 LGFLALPGNPEAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFN 228 (529)
T ss_dssp HHHCCCTTCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCTT
T ss_pred cccccCCCCCCCcCcccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCccc
Confidence 233222 011112345688999999999875 247999999999999999999888763 358999999999753
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.7e-09 Score=122.37 Aligned_cols=130 Identities=18% Similarity=0.132 Sum_probs=85.7
Q ss_pred EEEEEEcC-----CCCCCCCC--CCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC-
Q 002209 652 LSATLYLP-----PGYDPSKD--GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI- 723 (953)
Q Consensus 652 ~~~~l~~P-----~~~~~~~~--~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~- 723 (953)
+...+|.| .. ...++ .++|+||++|||.+..+..... .+ ....|+++|++|+.++|+..
T Consensus 91 L~lnv~~P~~~~~~~-~~~~~~~~~~Pviv~iHGGg~~~g~~~~~------~~------~~~~l~~~g~vvv~~nYRl~~ 157 (551)
T 2fj0_A 91 IHANIHVPYYALPRD-AADKNRFAGLPVLVFIHGGGFAFGSGDSD------LH------GPEYLVSKDVIVITFNYRLNV 157 (551)
T ss_dssp CEEEEEEEGGGCCCC---------CEEEEEEECCSTTTSCCSCTT------TC------BCTTGGGGSCEEEEECCCCHH
T ss_pred eEEEEEecCcccccc-ccccCcCCCCCEEEEEcCCccccCCCccc------cc------CHHHHHhCCeEEEEeCCcCCc
Confidence 55677788 32 11111 1389999999987554332110 01 12356789999999888632
Q ss_pred CCCCChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh--CCCcccEEEEcccCC
Q 002209 724 IGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAY 794 (953)
Q Consensus 724 ~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~ 794 (953)
.|+.........+...+.|+.++++|+.++ ...|+++|.|+|+|+||.+++.++.. .+.+|+++|+.+|..
T Consensus 158 ~Gf~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 233 (551)
T 2fj0_A 158 YGFLSLNSTSVPGNAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGTS 233 (551)
T ss_dssp HHHCCCSSSSCCSCHHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCT
T ss_pred cccccCcccCCCCchhHHHHHHHHHHHHHHHHHhCCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCCc
Confidence 222221111112245689999999999876 23699999999999999999988875 346899999999863
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.8e-06 Score=92.82 Aligned_cols=228 Identities=11% Similarity=0.004 Sum_probs=117.3
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
......+||| |+.+...+ ..+++...|.++|.++++...-...+... ......+.|+||++.++.+ +....
T Consensus 140 Ph~~~~~pdG--i~Vs~~g~--~~g~~~g~v~vlD~~T~~v~~~~~~~~~~-~~~~Yd~~~~p~~~~mvsS--~wg~p-- 210 (462)
T 2ece_A 140 LHTVHCGPDA--IYISALGN--EEGEGPGGILMLDHYSFEPLGKWEIDRGD-QYLAYDFWWNLPNEVLVSS--EWAVP-- 210 (462)
T ss_dssp EEEEEECSSC--EEEEEEEE--TTSCSCCEEEEECTTTCCEEEECCSBCTT-CCCCCCEEEETTTTEEEEC--BCCCH--
T ss_pred ccceeECCCe--EEEEcCCC--cCCCCCCeEEEEECCCCeEEEEEccCCCC-ccccceEEECCCCCEEEEc--cCcCc--
Confidence 3445789999 44333221 23556789999999988765432211110 0001257889999977754 00000
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeCCC---Ccccc--cccCCCC
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP---AVYTS--LDPSPDE 343 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~~~---~~~~~--~~~SpDG 343 (953)
. .+... ....+ ... ....+|.++|+ +++.. .+.-+ ..... ++++|||
T Consensus 211 ------------------~----~~~~g-~~~~~--~~~-~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg 264 (462)
T 2ece_A 211 ------------------N----TIEDG-LKLEH--LKD-RYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTK 264 (462)
T ss_dssp ------------------H----HHTTC-CCTTT--HHH-HSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTC
T ss_pred ------------------c----ccccc-cchhh--hhh-ccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCC
Confidence 0 00000 00000 000 13467889999 66432 33221 22223 4669999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEecc--CC---CcccCC---ccccccccCccceeeccCCCCceE
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD--LP---LAEDIP---IAFNSVRKGMRSINWRSDKPSTLY 415 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~--~~---~~~~~p---~~~~~~~~~~~~~~wspDg~~i~~ 415 (953)
+++.+..... ......+|++|..+++..+.+.. .+ ....+| ..+.+....+..+.+||||+.|+.
T Consensus 265 ~~aYV~~e~~-------~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYV 337 (462)
T 2ece_A 265 LMGFINMVVS-------LKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYL 337 (462)
T ss_dssp CEEEEEEEEE-------TTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEE
T ss_pred CEEEEEEeee-------ccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEE
Confidence 9888776410 01123477777666554332221 11 111111 111122234567999999997655
Q ss_pred EEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe----ecc-------------cccCCeeeccCCceEEEEE
Q 002209 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH----KLD-------------LRYGGISWCDDSLALVYES 474 (953)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~----~~~-------------~~~~~~~~SpDg~~l~~~~ 474 (953)
. ++ ..+.|.++++ .+.++.+.+. .+. +....+.+||||++|+.+.
T Consensus 338 S-nr-----------g~d~VavfdV--~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 338 S-LW-----------GIGEVRQYDI--SNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp E-ET-----------TTTEEEEEEC--SSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred E-eC-----------CCCEEEEEEe--cCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 4 22 3457888886 2333444331 111 1246789999999998876
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=7.8e-06 Score=92.66 Aligned_cols=268 Identities=11% Similarity=0.049 Sum_probs=153.0
Q ss_pred EeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCC
Q 002209 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (953)
Q Consensus 195 ~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 274 (953)
.+++||+.|+... ....|.++|+.+++........... +..+.|+ ++.|+...
T Consensus 124 ~~~~~g~~l~sg~---------~dg~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~--~~~l~s~~------------ 176 (445)
T 2ovr_B 124 CLQFCGNRIVSGS---------DDNTLKVWSAVTGKCLRTLVGHTGG----VWSSQMR--DNIIISGS------------ 176 (445)
T ss_dssp EEEEETTEEEEEE---------TTSCEEEEETTTCCEEEECCCCSSC----EEEEEEE--TTEEEEEE------------
T ss_pred EEEEcCCEEEEEE---------CCCcEEEEECCCCcEEEEEcCCCCC----EEEEEec--CCEEEEEe------------
Confidence 5778899988754 3567888999888765443322222 5677776 44666541
Q ss_pred CCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-CcccccccCCCCcEEEEEEe
Q 002209 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKYILISSI 351 (953)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDG~~l~~~~~ 351 (953)
..+.|.++|+ +++. ..+... ..+..+.| +++.|+..+.
T Consensus 177 -------------------------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~s~ 217 (445)
T 2ovr_B 177 -------------------------------------TDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSR 217 (445)
T ss_dssp -------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred -------------------------------------CCCeEEEEECCcCcEEEEECCCCCcEEEEEe--cCCEEEEEeC
Confidence 2245777888 6653 334333 56666667 4677777764
Q ss_pred cCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccc
Q 002209 352 HRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVT 430 (953)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~ 430 (953)
+ +.|.+||+..+. ...+..+. ..+..+.| ||+.++.. +
T Consensus 218 d-------------g~i~~wd~~~~~~~~~~~~~~-------------~~v~~~~~--~~~~l~~~-------------~ 256 (445)
T 2ovr_B 218 D-------------ATLRVWDIETGQCLHVLMGHV-------------AAVRCVQY--DGRRVVSG-------------A 256 (445)
T ss_dssp T-------------SEEEEEESSSCCEEEEEECCS-------------SCEEEEEE--CSSCEEEE-------------E
T ss_pred C-------------CEEEEEECCCCcEEEEEcCCc-------------ccEEEEEE--CCCEEEEE-------------c
Confidence 3 389999998544 33333321 22345566 77766555 4
Q ss_pred cCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCC
Q 002209 431 PRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510 (953)
Q Consensus 431 ~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 510 (953)
..+.+.+||+ .++.....+..+...+..+.| |++.|+....++ .+.++|+.++ +...........
T Consensus 257 ~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~----~i~i~d~~~~--~~~~~~~~~~~~----- 321 (445)
T 2ovr_B 257 YDFMVKVWDP--ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT----SIRVWDVETG--NCIHTLTGHQSL----- 321 (445)
T ss_dssp TTSCEEEEEG--GGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS----CEEEEETTTC--CEEEEECCCCSC-----
T ss_pred CCCEEEEEEC--CCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC----eEEEEECCCC--CEEEEEcCCccc-----
Confidence 4567889986 222222334444455566777 888888776543 4666676664 222222222111
Q ss_pred CCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCcccc
Q 002209 511 GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGD 590 (953)
Q Consensus 511 ~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 590 (953)
...++++++.++....+ ..|.+||+.+++.......... ....+. +
T Consensus 322 ---v~~~~~~~~~l~~~~~d---------------------g~i~vwd~~~~~~~~~~~~~~~-~~~~v~---------~ 367 (445)
T 2ovr_B 322 ---TSGMELKDNILVSGNAD---------------------STVKIWDIKTGQCLQTLQGPNK-HQSAVT---------C 367 (445)
T ss_dssp ---EEEEEEETTEEEEEETT---------------------SCEEEEETTTCCEEEEECSTTS-CSSCEE---------E
T ss_pred ---EEEEEEeCCEEEEEeCC---------------------CeEEEEECCCCcEEEEEccCCC-CCCCEE---------E
Confidence 13456677776665521 2499999988876555443211 000111 2
Q ss_pred ccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002209 591 LYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (953)
Q Consensus 591 ~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~ 622 (953)
++.+++.++.... -..+.++++.+++..
T Consensus 368 ~~~~~~~l~s~~~----dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 368 LQFNKNFVITSSD----DGTVKLWDLKTGEFI 395 (445)
T ss_dssp EEECSSEEEEEET----TSEEEEEETTTCCEE
T ss_pred EEECCCEEEEEeC----CCeEEEEECCCCcee
Confidence 2334555543332 246899998888653
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=5.4e-07 Score=98.22 Aligned_cols=253 Identities=9% Similarity=0.019 Sum_probs=130.7
Q ss_pred eEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCC-CCCCCCCCCCCCCCceeecCCCccccchhhhhh
Q 002209 220 RVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL-RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDL 298 (953)
Q Consensus 220 ~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (953)
.|+++|+++++...-...+.. - .+.+||||+.+|++.... +..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-----P-~i~~spDg~~lyVan~~~~r~~------------------------------ 90 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-----S-LAVAGHSGSDFALASTSFARSA------------------------------ 90 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-----C-EEEECTTSSCEEEEEEEETTTT------------------------------
T ss_pred eEEEEECCCCeEEEEEeCCCC-----C-ceEECCCCCEEEEEcccccccc------------------------------
Confidence 899999999886544333321 2 689999999999872100 000
Q ss_pred cCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC--------CcccccccCCCCcEEEEEEecCCccccccCCCCCcce
Q 002209 299 LKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP--------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQV 368 (953)
Q Consensus 299 ~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~--------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i 368 (953)
..+ ....|.++|+ ++++ ..+.-+ .....+++||||++|++..... ...+
T Consensus 91 -~G~---------~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~-----------~~~v 149 (368)
T 1mda_H 91 -KGK---------RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS-----------SAAA 149 (368)
T ss_dssp -SSS---------EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS-----------SCEE
T ss_pred -cCC---------CCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCC-----------CCeE
Confidence 000 2356888998 7643 333211 2456889999999998875321 1246
Q ss_pred EE--EeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec---cC---------------------
Q 002209 369 GV--WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ---DG--------------------- 422 (953)
Q Consensus 369 ~~--~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~---~~--------------------- 422 (953)
.+ +|+.+ .+.+.........|. ....-+++++||+.+++-.+.. ++
T Consensus 150 ~V~~iD~~t--v~~i~v~~~~~~~p~------g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~ 221 (368)
T 1mda_H 150 GLSVPGASD--DQLTKSASCFHIHPG------AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY 221 (368)
T ss_dssp EEEETTTEE--EEEEECSSCCCCEEE------ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT
T ss_pred EEEEEchhh--ceEEECCCceEEccC------CCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcccccc
Confidence 66 66655 343322110000000 0111134556655433322110 00
Q ss_pred CCcccccccCCeEEEEecCCCCCCCceEEeec----------ccc---cCCeeeccCCceEEEEEecc-cC----ceEEE
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL----------DLR---YGGISWCDDSLALVYESWYK-TR----RTRTW 484 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~----------~~~---~~~~~~SpDg~~l~~~~~~~-~~----~~~l~ 484 (953)
++..+..+. +.++++|. .++..+.+... ... ...+.++|||++++++.... .. ...+.
T Consensus 222 ~~~~~~vs~-~~V~viD~---~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 222 PGMLVWAVA-SSILQGDI---PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp TTEEEECBS-SCCEEEEC---CSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred CCEEEEEcC-CEEEEEEC---CCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE
Confidence 000001122 56777774 33322222111 111 12268999999988875511 10 12455
Q ss_pred EEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCce
Q 002209 485 VISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSK 564 (953)
Q Consensus 485 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~ 564 (953)
++|+.+.. ....+.-.. ...+ +.|+|||+++++..... ...|.++|+++++.
T Consensus 298 ViD~~t~~-vv~~i~vg~--~p~g------i~~s~Dg~~l~va~~~~-------------------~~~VsVID~~t~kv 349 (368)
T 1mda_H 298 SVTASVGQ-TSGPISNGH--DSDA------IIAAQDGASDNYANSAG-------------------TEVLDIYDAASDQD 349 (368)
T ss_dssp EEESSSCC-EEECCEEEE--EECE------EEECCSSSCEEEEEETT-------------------TTEEEEEESSSCEE
T ss_pred EEECCCCe-EEEEEECCC--Ccce------EEECCCCCEEEEEccCC-------------------CCeEEEEECCCCcE
Confidence 99998852 111111110 1111 78999999888776311 12599999999887
Q ss_pred EEEec
Q 002209 565 ERIWE 569 (953)
Q Consensus 565 ~~l~~ 569 (953)
..-..
T Consensus 350 v~~I~ 354 (368)
T 1mda_H 350 QSSVE 354 (368)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 65443
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-08 Score=117.69 Aligned_cols=132 Identities=16% Similarity=0.165 Sum_probs=88.3
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCcEEEEcCCCC-C
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTP-I 723 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~-~ 723 (953)
+.|.. ...+|.|... . .++|+|||+|||.+..+...... + ....|+ +.|++|+.++|+- .
T Consensus 91 sedcl--~lnv~~P~~~--~--~~~Pv~v~iHGG~~~~g~~~~~~------~------~~~~la~~~~~vvv~~nYRlg~ 152 (537)
T 1ea5_A 91 SEDCL--YLNIWVPSPR--P--KSTTVMVWIYGGGFYSGSSTLDV------Y------NGKYLAYTEEVVLVSLSYRVGA 152 (537)
T ss_dssp CSCCC--EEEEEECSSC--C--SSEEEEEEECCSTTTCCCTTCGG------G------CTHHHHHHHTCEEEECCCCCHH
T ss_pred CCcCC--eEEEeccCCC--C--CCCeEEEEECCCcccCCCCCCCc------c------ChHHHHhcCCEEEEEeccCccc
Confidence 44554 4467788652 1 35999999999865543221100 1 123556 7899999988862 1
Q ss_pred CCCCCh-hhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccCCC
Q 002209 724 IGEGDE-EANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (953)
Q Consensus 724 ~G~G~~-~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~d 795 (953)
.|+... ......+...+.|+.++++|+.++ ...|+++|.|+|+|+||.++..++... ..+|+++|+.+|...
T Consensus 153 ~Gf~~~~~~~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 230 (537)
T 1ea5_A 153 FGFLALHGSQEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN 230 (537)
T ss_dssp HHHCCCTTCSSSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred cccccCCCCCCCcCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCcc
Confidence 232221 011112234589999999999876 237999999999999999998887742 358999999998653
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.2e-08 Score=113.88 Aligned_cols=130 Identities=22% Similarity=0.288 Sum_probs=85.7
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHH-HHHH-HcCcEEEEcCCCCCC-CCCC
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV-LLWL-ARGFAILGGPTTPII-GEGD 728 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la-~~G~~V~~~~~~~~~-G~G~ 728 (953)
+...+|.|.+.... +++|+||++|||.+..+.. ..+. +...+ ..++ ..|++|+.++|+-.. |+..
T Consensus 98 l~l~v~~P~~~~~~--~~~Pv~v~iHGGg~~~g~~--------~~~~--~~~l~~~~~~~~~~~vvv~~nYRl~~~gf~~ 165 (534)
T 1llf_A 98 LTINVVRPPGTKAG--ANLPVMLWIFGGGFEIGSP--------TIFP--PAQMVTKSVLMGKPIIHVAVNYRVASWGFLA 165 (534)
T ss_dssp CEEEEEECTTCCTT--CCEEEEEEECCSTTTSCCG--------GGSC--CHHHHHHHHHTTCCCEEEEECCCCHHHHHCC
T ss_pred eEEEEEECCCCCCC--CCceEEEEEeCCCcccCCC--------cccC--chHHHHHHHhcCCCEEEEEeCCCCCCCCCCC
Confidence 55678889764332 3599999999986554321 1111 11111 1122 368999998886321 2211
Q ss_pred hh--hhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--------CCcccEEEEcccC
Q 002209 729 EE--ANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--------PHLFCCGIARSGA 793 (953)
Q Consensus 729 ~~--~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~~~ 793 (953)
.. .....+...+.|+.++++|+.++ ...|+++|.|+|+|+||.+++.++... +.+|+++|+.+|.
T Consensus 166 ~~~~~~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~ 243 (534)
T 1llf_A 166 GDDIKAEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp SHHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred cccccccCCCchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccC
Confidence 10 01122345689999999999875 237999999999999999888777653 4679999999984
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.64 E-value=7e-08 Score=104.25 Aligned_cols=174 Identities=13% Similarity=0.084 Sum_probs=102.2
Q ss_pred HcCcEEEEcCCCCCCCCCCh-----hhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC----
Q 002209 710 ARGFAILGGPTTPIIGEGDE-----EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---- 780 (953)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~-----~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~---- 780 (953)
..+|.|+..+. .|+|.+ ............|+.+.++.+.. ..++.++||||||.+|..+|.+.
T Consensus 115 ~~~~~v~~~d~---~G~g~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~-----~~p~~l~G~S~GG~vA~~~A~~l~~~~ 186 (319)
T 2hfk_A 115 QEERDFLAVPL---PGYGTGTGTGTALLPADLDTALDAQARAILRAAG-----DAPVVLLGHAGGALLAHELAFRLERAH 186 (319)
T ss_dssp TTTCCEEEECC---TTCCBC---CBCCEESSHHHHHHHHHHHHHHHHT-----TSCEEEEEETHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEecC---CCCCCCcccccCCCCCCHHHHHHHHHHHHHHhcC-----CCCEEEEEECHHHHHHHHHHHHHHHhh
Confidence 47899999444 566654 23333456667777666655431 25799999999999999999875
Q ss_pred CCcccEEEEcccCCCCCCCC---c-----------CcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCC
Q 002209 781 PHLFCCGIARSGAYNRTLTP---F-----------GFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGT 846 (953)
Q Consensus 781 p~~~~a~v~~~~~~d~~~~~---~-----------~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~ 846 (953)
++.++.+|++++........ + .+.............|...-.......+++|+++++| .|..++
T Consensus 187 g~~v~~lvl~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvl~i~g-~D~~~~- 264 (319)
T 2hfk_A 187 GAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGRYARFLAGPRPGRSSAPVLLVRA-SEPLGD- 264 (319)
T ss_dssp SCCCSEEEEESCCCTTSCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHSCCCCCCCSCEEEEEE-SSCSSC-
T ss_pred CCCceEEEEeCCCCCCchhHHHHHHHHhhHHHHHhhccccchHHHHHHHHHHHHHHhCCCCCcCCCEEEEEc-CCCCCC-
Confidence 45689998887642211000 0 0000000000011111110000123678899999999 999887
Q ss_pred chHH-HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 847 LTMQ-SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 847 ~~~~-~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
... ...+.+. ....++++.+++ +|.....+....+.+.+.+||.+..
T Consensus 265 -~~~~~~~~~~~---~~~~~~~~~v~g-~H~~~~~e~~~~~~~~i~~~L~~~~ 312 (319)
T 2hfk_A 265 -WQEERGDWRAH---WDLPHTVADVPG-DHFTMMRDHAPAVAEAVLSWLDAIE 312 (319)
T ss_dssp -CCGGGCCCSCC---CSSCSEEEEESS-CTTHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -ccccccchhhc---CCCCCEEEEeCC-CcHHHHHHhHHHHHHHHHHHHHhcC
Confidence 544 2222111 122468888995 8974323467788888999998754
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=4.3e-06 Score=87.53 Aligned_cols=190 Identities=16% Similarity=0.124 Sum_probs=119.0
Q ss_pred CCeEEEEEeeccccCCCCcceEEEEECCCCceee-----cccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCC
Q 002209 200 GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP-----LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (953)
Q Consensus 200 G~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~-----lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 274 (953)
|.+|+|+. ...|++++++++..+. +...+.. ....++|.++++.|+++.
T Consensus 1 ~~~l~~~~----------~~~I~~~~~~g~~~~~~~~~~~~~~~~~----~~~gi~~d~~~~~ly~~d------------ 54 (267)
T 1npe_A 1 GTHLLFAQ----------TGKIERLPLERNTMKKTEAKAFLHIPAK----VIIGLAFDCVDKVVYWTD------------ 54 (267)
T ss_dssp CEEEEEEE----------EEEEEEEEESSSCBCGGGCEEEEEEEEE----EEEEEEEETTTTEEEEEE------------
T ss_pred CcEEEEEc----------CCeEEEEEecCcccccccceeeecCCCC----cEEEEEEecCCCEEEEEE------------
Confidence 56788865 3489999998865432 1111111 145788999888888761
Q ss_pred CCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeC-CC-CcccccccCCCCcEEEEEEe
Q 002209 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG-PP-AVYTSLDPSPDEKYILISSI 351 (953)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~-~~-~~~~~~~~SpDG~~l~~~~~ 351 (953)
.....|+++++ ++....+. .. .....++++|+++.|+++..
T Consensus 55 ------------------------------------~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~ 98 (267)
T 1npe_A 55 ------------------------------------ISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS 98 (267)
T ss_dssp ------------------------------------TTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET
T ss_pred ------------------------------------CCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC
Confidence 02357889998 44444333 33 46678899999888887752
Q ss_pred cCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccc
Q 002209 352 HRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTP 431 (953)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~ 431 (953)
. ...|++++.+++..+.+..... ..+..++++|++..+++. +.. ..
T Consensus 99 ~------------~~~I~~~~~~g~~~~~~~~~~~------------~~P~~i~vd~~~g~lyv~-~~~---------~~ 144 (267)
T 1npe_A 99 Q------------LDRIEVAKMDGTQRRVLFDTGL------------VNPRGIVTDPVRGNLYWT-DWN---------RD 144 (267)
T ss_dssp T------------TTEEEEEETTSCSCEEEECSSC------------SSEEEEEEETTTTEEEEE-ECC---------SS
T ss_pred C------------CCEEEEEEcCCCCEEEEEECCC------------CCccEEEEeeCCCEEEEE-ECC---------CC
Confidence 2 2378899998765444432110 234578999987655443 221 11
Q ss_pred CCeEEEEecCCCCCCCceEEeec-ccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 432 RDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 432 ~~~l~~~d~~~~~g~~~~~l~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
...|++++. ++...+.+... ......+++++|++.|+++.... .+|++++.++.
T Consensus 145 ~~~I~~~~~---dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~---~~I~~~~~~g~ 199 (267)
T 1npe_A 145 NPKIETSHM---DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT---HRAECLNPAQP 199 (267)
T ss_dssp SCEEEEEET---TSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT---TEEEEEETTEE
T ss_pred CcEEEEEec---CCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCC---CEEEEEecCCC
Confidence 357888885 55554444322 23345689999999988875433 37999998763
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.5e-05 Score=82.74 Aligned_cols=118 Identities=13% Similarity=-0.060 Sum_probs=61.1
Q ss_pred ccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCce
Q 002209 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (953)
Q Consensus 336 ~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~ 414 (953)
.+..+||| |+++...++ .+..++.+.++|.++.++. .+....... .-...+.|+||++ ++
T Consensus 142 ~~~~~pdG--i~Vs~~g~~------~g~~~g~v~vlD~~T~~v~~~~~~~~~~~----------~~~Yd~~~~p~~~-~m 202 (462)
T 2ece_A 142 TVHCGPDA--IYISALGNE------EGEGPGGILMLDHYSFEPLGKWEIDRGDQ----------YLAYDFWWNLPNE-VL 202 (462)
T ss_dssp EEEECSSC--EEEEEEEET------TSCSCCEEEEECTTTCCEEEECCSBCTTC----------CCCCCEEEETTTT-EE
T ss_pred ceeECCCe--EEEEcCCCc------CCCCCCeEEEEECCCCeEEEEEccCCCCc----------cccceEEECCCCC-EE
Confidence 45789999 544443331 2334568999999865544 443221111 1123578999998 44
Q ss_pred EEEEe------ccCCCcc-cccccCCeEEEEecCCCCCCCce-EEeec-c-cccCC--eeeccCCceEEEEEe
Q 002209 415 YWAET------QDGGDAK-VEVTPRDIIYTQQAEPVQGEGPE-ILHKL-D-LRYGG--ISWCDDSLALVYESW 475 (953)
Q Consensus 415 ~~~~~------~~~~~~~-~~~~~~~~l~~~d~~~~~g~~~~-~l~~~-~-~~~~~--~~~SpDg~~l~~~~~ 475 (953)
|..+. ..+-... ......++|.+||+ +.++.. .+.-+ . ..... ++|+|||++++....
T Consensus 203 vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~---~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e 272 (462)
T 2ece_A 203 VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL---RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMV 272 (462)
T ss_dssp EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET---TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEE
T ss_pred EEccCcCccccccccchhhhhhccCCEEEEEEC---CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEe
Confidence 44321 0110000 00023578999996 433322 22221 1 11122 356999998777654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=6e-06 Score=86.41 Aligned_cols=200 Identities=10% Similarity=0.022 Sum_probs=124.0
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
....++|+|+++.|+++.. +...|++++++++....+....... ...+++.+++..|+++..
T Consensus 37 ~~~gi~~d~~~~~ly~~d~--------~~~~I~~~~~~g~~~~~~~~~~~~~----p~~ia~d~~~~~lyv~d~------ 98 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDI--------SEPSIGRASLHGGEPTTIIRQDLGS----PEGIALDHLGRTIFWTDS------ 98 (267)
T ss_dssp EEEEEEEETTTTEEEEEET--------TTTEEEEEESSSCCCEEEECTTCCC----EEEEEEETTTTEEEEEET------
T ss_pred cEEEEEEecCCCEEEEEEC--------CCCEEEEEecCCCCcEEEEECCCCC----ccEEEEEecCCeEEEEEC------
Confidence 4567899999999888642 3568999999987655443222111 457889998888887610
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCc-eeEeC-CC-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEIG-PP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~-~~~l~-~~-~~~~~~~~SpDG~~l 346 (953)
....|++++++|. .+.+. .. .....++++|++.+|
T Consensus 99 ------------------------------------------~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~l 136 (267)
T 1npe_A 99 ------------------------------------------QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNL 136 (267)
T ss_dssp ------------------------------------------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEE
T ss_pred ------------------------------------------CCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEE
Confidence 2346788888553 33332 22 456778999988888
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (953)
+++.... ....|+++++++...+.+..... ..+..++|+||++.|++. +
T Consensus 137 yv~~~~~----------~~~~I~~~~~dg~~~~~~~~~~~------------~~P~gia~d~~~~~lyv~-d-------- 185 (267)
T 1npe_A 137 YWTDWNR----------DNPKIETSHMDGTNRRILAQDNL------------GLPNGLTFDAFSSQLCWV-D-------- 185 (267)
T ss_dssp EEEECCS----------SSCEEEEEETTSCCCEEEECTTC------------SCEEEEEEETTTTEEEEE-E--------
T ss_pred EEEECCC----------CCcEEEEEecCCCCcEEEEECCC------------CCCcEEEEcCCCCEEEEE-E--------
Confidence 8775221 12378888888765554432111 234578999998866544 2
Q ss_pred cccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 427 ~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
...+.|++++. ++...+.+........++ +.|+..|+++.+.. . +|++++.+++
T Consensus 186 ---~~~~~I~~~~~---~g~~~~~~~~~~~~P~gi--~~d~~~lyva~~~~-~--~v~~~d~~~g 239 (267)
T 1npe_A 186 ---AGTHRAECLNP---AQPGRRKVLEGLQYPFAV--TSYGKNLYYTDWKT-N--SVIAMDLAIS 239 (267)
T ss_dssp ---TTTTEEEEEET---TEEEEEEEEECCCSEEEE--EEETTEEEEEETTT-T--EEEEEETTTT
T ss_pred ---CCCCEEEEEec---CCCceEEEecCCCCceEE--EEeCCEEEEEECCC-C--eEEEEeCCCC
Confidence 22457889985 444333333222222233 45677787765443 2 7999998875
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=98.62 E-value=3.4e-08 Score=113.94 Aligned_cols=134 Identities=23% Similarity=0.308 Sum_probs=86.9
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHH-HHH-HcCcEEEEcCCCCC
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVL-LWL-ARGFAILGGPTTPI 723 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~la-~~G~~V~~~~~~~~ 723 (953)
+.|. +...+|.|.+.... .++|+|||+|||.+..+.. ..+. +...+. .++ ..|++|+.++|+..
T Consensus 102 sedc--l~l~v~~P~~~~~~--~~~Pviv~iHGGg~~~g~~--------~~~~--~~~l~~~~l~~~~~~vvv~~nYRl~ 167 (544)
T 1thg_A 102 NEDC--LYLNVFRPAGTKPD--AKLPVMVWIYGGAFVYGSS--------AAYP--GNSYVKESINMGQPVVFVSINYRTG 167 (544)
T ss_dssp CSCC--CEEEEEEETTCCTT--CCEEEEEEECCCTTCCSGG--------GGCC--SHHHHHHHHHTTCCCEEEEECCCCH
T ss_pred CCCC--eEEEEEeCCCCCCC--CCCcEEEEECCCccccCCc--------cccC--chHHHHHHhhcCCCEEEEeCCCCCC
Confidence 3454 45567888764322 3599999999987554322 1111 111111 122 25899999888642
Q ss_pred C-CCCChhh--hhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--------CCcccEEEE
Q 002209 724 I-GEGDEEA--NDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--------PHLFCCGIA 789 (953)
Q Consensus 724 ~-G~G~~~~--~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~ 789 (953)
. |+..... ....+...+.|+.++++|+.++ ...|+++|.|+|+|+||.+++.++... ..+|+++|+
T Consensus 168 ~~gf~~~~~~~~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~ 247 (544)
T 1thg_A 168 PFGFLGGDAITAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAIL 247 (544)
T ss_dssp HHHHCCSHHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEE
T ss_pred cccCCCcccccccCCCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEE
Confidence 2 2111100 0112345689999999999875 247999999999999999998887752 357999999
Q ss_pred cccC
Q 002209 790 RSGA 793 (953)
Q Consensus 790 ~~~~ 793 (953)
.+|.
T Consensus 248 ~Sg~ 251 (544)
T 1thg_A 248 QSGG 251 (544)
T ss_dssp ESCC
T ss_pred eccc
Confidence 9985
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=3.2e-06 Score=95.55 Aligned_cols=212 Identities=10% Similarity=0.058 Sum_probs=122.2
Q ss_pred EeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCC
Q 002209 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (953)
Q Consensus 195 ~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 274 (953)
.+++||+.|+... ....|.++|+.+++........... +..+.| |++.|+...
T Consensus 138 ~~~~d~~~l~~g~---------~dg~i~iwd~~~~~~~~~~~~h~~~----v~~l~~--~~~~l~sg~------------ 190 (435)
T 1p22_A 138 CLQYDDQKIVSGL---------RDNTIKIWDKNTLECKRILTGHTGS----VLCLQY--DERVIITGS------------ 190 (435)
T ss_dssp EEECCSSEEEEEE---------SSSCEEEEESSSCCEEEEECCCSSC----EEEEEC--CSSEEEEEE------------
T ss_pred EEEECCCEEEEEe---------CCCeEEEEeCCCCeEEEEEcCCCCc----EEEEEE--CCCEEEEEc------------
Confidence 5566999998855 2567888899888765544333322 556666 788887661
Q ss_pred CCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-CcccccccCCCCcEEEEEEe
Q 002209 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKYILISSI 351 (953)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDG~~l~~~~~ 351 (953)
..+.|.++|+ +|+. ..+... ..+..+.|++ ..|+..+.
T Consensus 191 -------------------------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~ 231 (435)
T 1p22_A 191 -------------------------------------SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSK 231 (435)
T ss_dssp -------------------------------------TTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEET
T ss_pred -------------------------------------CCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeC
Confidence 2246778888 6654 334333 6677888874 46666663
Q ss_pred cCCccccccCCCCCcceEEEeccCceEEEe-ccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccc
Q 002209 352 HRPYSFIVPCGRFPRQVGVWTTDGIFVREL-CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVT 430 (953)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l-~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~ 430 (953)
+ +.|.+||+..+....+ .... +....+..+.| ||+.++.. +
T Consensus 232 d-------------g~i~vwd~~~~~~~~~~~~~~----------~~~~~v~~~~~--~~~~l~s~-------------~ 273 (435)
T 1p22_A 232 D-------------RSIAVWDMASPTDITLRRVLV----------GHRAAVNVVDF--DDKYIVSA-------------S 273 (435)
T ss_dssp T-------------SCEEEEECSSSSCCEEEEEEC----------CCSSCEEEEEE--ETTEEEEE-------------E
T ss_pred C-------------CcEEEEeCCCCCCceeeeEec----------CCCCcEEEEEe--CCCEEEEE-------------e
Confidence 3 3899999985432211 1110 11122345666 67665554 4
Q ss_pred cCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCC
Q 002209 431 PRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510 (953)
Q Consensus 431 ~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 510 (953)
..+.+.+||+ .++.....+..+...+..+.| +++.|+....++ .|.++|+.++ +...........+
T Consensus 274 ~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg----~i~iwd~~~~--~~~~~~~~h~~~v---- 339 (435)
T 1p22_A 274 GDRTIKVWNT--STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN----TIRLWDIECG--ACLRVLEGHEELV---- 339 (435)
T ss_dssp TTSEEEEEET--TTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTS----CEEEEETTTC--CEEEEECCCSSCE----
T ss_pred CCCeEEEEEC--CcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCC----eEEEEECCCC--CEEEEEeCCcCcE----
Confidence 4568999996 233223344445555556666 567777765443 4666676664 3333333332222
Q ss_pred CCCCeEeccCCCEEEEEe
Q 002209 511 GSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 511 ~~p~~~~SpDG~~l~~~~ 528 (953)
.....||++|+...
T Consensus 340 ----~~~~~~~~~l~sg~ 353 (435)
T 1p22_A 340 ----RCIRFDNKRIVSGA 353 (435)
T ss_dssp ----EEEECCSSEEEEEE
T ss_pred ----EEEEecCCEEEEEe
Confidence 22334788777665
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-06 Score=91.63 Aligned_cols=125 Identities=14% Similarity=0.128 Sum_probs=69.4
Q ss_pred CCCCceecCC----CCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecC
Q 002209 110 PLPALSFSPQ----RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF 185 (953)
Q Consensus 110 ~~~~~~~SPD----G~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~ 185 (953)
.+..+++||| |++++..... ..++.+ +..++..-. . ...+..|.+|++..+|.. ...+..+
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~--~~v~~l--~~g~lv~ss--~-------~g~d~~V~~~~~s~dG~~--~~s~~~~ 177 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNI--KAVLGL--TKRRLVSSS--G-------TLSDQQVEVMTFAEDGGG--KENQFLM 177 (356)
T ss_dssp EEEEECC------CCEEEEEEEEE--EEEEEE--TTTEEEEEE--S-------SSTTCEEEEEEECTTSCE--EEEEEEC
T ss_pred ceEEEEECCCccccccEEEeCCCe--EEEEec--CCCcEEEec--c-------cCCCCcEEEEEECCCCce--eeeeccC
Confidence 5678899999 9999886542 111111 000000000 0 001357899999666532 2233333
Q ss_pred CCCCcccceEecc---CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 186 PDGAKLNFVTWSQ---DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 186 ~~~~~~~~~~wSP---DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
+ ..+...+||| ||+.|+-.+ .+..|.++|+++|+..+........ ...+...+|+|||+.++..
T Consensus 178 ~--~~v~~l~fs~~~g~~~~LaSgS---------~D~TIkIWDl~TGk~l~tL~g~~~~-v~~v~~vafSpdG~~lvs~ 244 (356)
T 2w18_A 178 P--PEETILTFAEVQGMQEALLGTT---------IMNNIVIWNLKTGQLLKKMHIDDSY-QASVCHKAYSEMGLLFIVL 244 (356)
T ss_dssp C--CSSCEEEEEEEETSTTEEEEEE---------TTSEEEEEETTTCCEEEEEECCC----CCCEEEEEEETTEEEEEE
T ss_pred C--CceeeEEeeccCCCCceEEEec---------CCCcEEEEECCCCcEEEEEcCCCcc-eeeeEEEEECCCCCEEEEe
Confidence 3 3577889999 778887754 3678999999998864433221111 0113456899999988765
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.4e-06 Score=91.33 Aligned_cols=191 Identities=9% Similarity=-0.011 Sum_probs=111.6
Q ss_pred CCCeEEEEEeeccccCCCCcceEEEEECCCCcee-ecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCC
Q 002209 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPL 277 (953)
Q Consensus 199 DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 277 (953)
++++|+.+.. ....|.++|+++++.. .+..... ...+++++|| .|+++.
T Consensus 52 ~~~~lyv~~~--------~~~~v~viD~~t~~~~~~i~~~~~------p~~i~~~~~g-~lyv~~--------------- 101 (328)
T 3dsm_A 52 RDGIGWIVVN--------NSHVIFAIDINTFKEVGRITGFTS------PRYIHFLSDE-KAYVTQ--------------- 101 (328)
T ss_dssp ETTEEEEEEG--------GGTEEEEEETTTCCEEEEEECCSS------EEEEEEEETT-EEEEEE---------------
T ss_pred ECCEEEEEEc--------CCCEEEEEECcccEEEEEcCCCCC------CcEEEEeCCC-eEEEEE---------------
Confidence 5666666542 2468999999988864 3422222 4578898999 566551
Q ss_pred CCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeCCCC------cccccccCCCCcEEEEE
Q 002209 278 GPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPPA------VYTSLDPSPDEKYILIS 349 (953)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~~~~------~~~~~~~SpDG~~l~~~ 349 (953)
. ....|+++|+ +++.. .+..+. ....+++ ++++|+++
T Consensus 102 ------------------------~---------~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~ 146 (328)
T 3dsm_A 102 ------------------------I---------WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVN 146 (328)
T ss_dssp ------------------------B---------SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEE
T ss_pred ------------------------C---------CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEE
Confidence 0 1246888898 77654 333222 4556666 66777666
Q ss_pred EecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002209 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (953)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (953)
... ....|.++|+++++.. .+... ..+..+.++|||+ +++. ...+......
T Consensus 147 ~~~-----------~~~~v~viD~~t~~~~~~i~~g--------------~~p~~i~~~~dG~-l~v~-~~~~~~~~~~- 198 (328)
T 3dsm_A 147 CWS-----------YQNRILKIDTETDKVVDELTIG--------------IQPTSLVMDKYNK-MWTI-TDGGYEGSPY- 198 (328)
T ss_dssp ECT-----------TCCEEEEEETTTTEEEEEEECS--------------SCBCCCEECTTSE-EEEE-BCCBCTTCSS-
T ss_pred cCC-----------CCCEEEEEECCCCeEEEEEEcC--------------CCccceEEcCCCC-EEEE-ECCCccCCcc-
Confidence 411 1348999999865543 33221 1234688999997 4333 2111000000
Q ss_pred cccCCeEEEEecCCCCCCCce-EEeec-ccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 429 VTPRDIIYTQQAEPVQGEGPE-ILHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 429 ~~~~~~l~~~d~~~~~g~~~~-~l~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
....+.|+++|. .+++.. .+.-. ......++|+|||++|++... .++++|++++
T Consensus 199 ~~~~~~v~~id~---~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~------~v~~~d~~t~ 254 (328)
T 3dsm_A 199 GYEAPSLYRIDA---ETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN------DIWRMPVEAD 254 (328)
T ss_dssp CBCCCEEEEEET---TTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS------SEEEEETTCS
T ss_pred ccCCceEEEEEC---CCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc------EEEEEECCCC
Confidence 011368999995 434333 23221 124567999999999887632 5899999875
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=5.7e-08 Score=113.16 Aligned_cols=115 Identities=18% Similarity=0.120 Sum_probs=78.6
Q ss_pred CCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEEcCCC-CCCCCCCh-------hhhhhhHHH
Q 002209 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTT-PIIGEGDE-------EANDRFVEQ 738 (953)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~-~~~G~G~~-------~~~~~~~~~ 738 (953)
.++|||||+|||.+..+... .. .+. ...|++ .|++|+.++|+ +..|+... ......+..
T Consensus 139 ~~~PV~v~iHGGg~~~g~~~--------~~-~~~---~~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~ 206 (585)
T 1dx4_A 139 NGLPILIWIYGGGFMTGSAT--------LD-IYN---ADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNV 206 (585)
T ss_dssp SSEEEEEEECCSTTTCCCTT--------CG-GGC---CHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCH
T ss_pred CCCCEEEEECCCcccCCCCC--------CC-CCC---chhhhccCCEEEEEecccccchhhcccccccccccCCCCCCcc
Confidence 35899999999875543221 11 011 234554 79999998887 33333221 011112344
Q ss_pred HHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccCC
Q 002209 739 LVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAY 794 (953)
Q Consensus 739 ~~~D~~~~~~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~ 794 (953)
.+.|+.++++|+.++- ..|+++|.|+|+|+||.++..++... ..+|+++|+.+|..
T Consensus 207 gl~D~~~al~wv~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 207 GLWDQALAIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHHHHHHHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred cHHHHHHHHHHHHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 5889999999998862 36899999999999999998887753 35899999999864
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.2e-06 Score=91.53 Aligned_cols=231 Identities=11% Similarity=0.050 Sum_probs=127.9
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCC-ccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD-IYL 242 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~-~~~ 242 (953)
.|.++|..+ + .....+. .+......+++||| +|+.+.. ....|+++|+++++.......+. ...
T Consensus 65 ~v~viD~~t-~--~~~~~i~---~~~~p~~i~~~~~g-~lyv~~~--------~~~~v~~iD~~t~~~~~~i~~g~~~~~ 129 (328)
T 3dsm_A 65 VIFAIDINT-F--KEVGRIT---GFTSPRYIHFLSDE-KAYVTQI--------WDYRIFIINPKTYEITGYIECPDMDME 129 (328)
T ss_dssp EEEEEETTT-C--CEEEEEE---CCSSEEEEEEEETT-EEEEEEB--------SCSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred EEEEEECcc-c--EEEEEcC---CCCCCcEEEEeCCC-eEEEEEC--------CCCeEEEEECCCCeEEEEEEcCCcccc
Confidence 578988743 2 2223443 23456778899998 5544321 25689999999987653222121 000
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
......+++ +++.|+++.. . ....|.++|+
T Consensus 130 ~~~p~~i~~--~~~~lyv~~~--------------------------------------~---------~~~~v~viD~~ 160 (328)
T 3dsm_A 130 SGSTEQMVQ--YGKYVYVNCW--------------------------------------S---------YQNRILKIDTE 160 (328)
T ss_dssp TCBCCCEEE--ETTEEEEEEC--------------------------------------T---------TCCEEEEEETT
T ss_pred CCCcceEEE--ECCEEEEEcC--------------------------------------C---------CCCEEEEEECC
Confidence 001335566 4555655410 0 1346889998
Q ss_pred CCcee-EeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002209 322 DGTVK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 322 ~g~~~-~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
+++.. .+........+.++|||+ ++++....... .+.......|+++|.+++++......+.. ..
T Consensus 161 t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~~~--~~~~~~~~~v~~id~~t~~v~~~~~~~~g-----------~~ 226 (328)
T 3dsm_A 161 TDKVVDELTIGIQPTSLVMDKYNK-MWTITDGGYEG--SPYGYEAPSLYRIDAETFTVEKQFKFKLG-----------DW 226 (328)
T ss_dssp TTEEEEEEECSSCBCCCEECTTSE-EEEEBCCBCTT--CSSCBCCCEEEEEETTTTEEEEEEECCTT-----------CC
T ss_pred CCeEEEEEEcCCCccceEEcCCCC-EEEEECCCccC--CccccCCceEEEEECCCCeEEEEEecCCC-----------CC
Confidence 77543 343335567889999998 44444221000 00001124799999986665432221110 13
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCce--E-EeecccccCCeeeccCCceEEEEEecc
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE--I-LHKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~--~-l~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
+..++|+|||+.+++. .. .++++|. ++++.. . +.........++++|++..|+.+...+
T Consensus 227 p~~la~~~d~~~lyv~-------------~~--~v~~~d~---~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~ 288 (328)
T 3dsm_A 227 PSEVQLNGTRDTLYWI-------------NN--DIWRMPV---EADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAID 288 (328)
T ss_dssp CEEEEECTTSCEEEEE-------------SS--SEEEEET---TCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTT
T ss_pred ceeEEEecCCCEEEEE-------------cc--EEEEEEC---CCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccc
Confidence 4679999999876665 22 7889985 333321 1 111123345689999877777764110
Q ss_pred -cCceEEEEEcCCC
Q 002209 478 -TRRTRTWVISPGS 490 (953)
Q Consensus 478 -~~~~~l~~~d~~~ 490 (953)
.....|+++++++
T Consensus 289 y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 289 YQQQGIVYRYSPQG 302 (328)
T ss_dssp SSSEEEEEEECTTC
T ss_pred cccCCEEEEECCCC
Confidence 1124788888773
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.60 E-value=4.4e-06 Score=89.51 Aligned_cols=218 Identities=9% Similarity=0.085 Sum_probs=120.1
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeec-ccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL-FQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-t~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
.+....++||+..|++... ...|++++.+ |+.+.+ ...........+..+++.+||+..+.. ......
T Consensus 72 ~~~~i~~~~~~g~l~v~~~---------~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~-~~~~~~ 140 (314)
T 1pjx_A 72 IPAGCQCDRDANQLFVADM---------RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA-PAGEVA 140 (314)
T ss_dssp CEEEEEECSSSSEEEEEET---------TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEE-CBCBCT
T ss_pred CCceEEEecCCCcEEEEEC---------CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEe-cCcccc
Confidence 4667889999334544331 2379999998 777665 432211001125578899999755433 110000
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccC----CCC
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPS----PDE 343 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~S----pDG 343 (953)
+. +...... .....|++++.+|+...+... .....++|+ |||
T Consensus 141 -~~-------------------------~~~~~~~-------~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg 187 (314)
T 1pjx_A 141 -PA-------------------------DYTRSMQ-------EKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRP 187 (314)
T ss_dssp -TS-------------------------CCCBTTS-------SSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCE
T ss_pred -cc-------------------------ccccccc-------CCCCeEEEECCCCCEEEeccCCCCcceEEEecccCCCC
Confidence 00 0000000 023568888876655554333 445678899 999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEecc-CceEE---EeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVR---ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~---~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~ 419 (953)
+.|+++... ...|++|+++ .+... .+...+... ...+..+++++||+ +|...
T Consensus 188 ~~l~v~~~~------------~~~i~~~~~~~~g~~~~~~~~~~~~~~~---------~~~p~~i~~d~~G~--l~v~~- 243 (314)
T 1pjx_A 188 YQLIVAETP------------TKKLWSYDIKGPAKIENKKVWGHIPGTH---------EGGADGMDFDEDNN--LLVAN- 243 (314)
T ss_dssp EEEEEEETT------------TTEEEEEEEEETTEEEEEEEEEECCCCS---------SCEEEEEEEBTTCC--EEEEE-
T ss_pred CEEEEEECC------------CCeEEEEECCCCCccccceEEEECCCCC---------CCCCCceEECCCCC--EEEEE-
Confidence 988776522 2378999876 33322 111111100 01234688999995 33311
Q ss_pred ccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
...+.|++++. .++.....+.........++|+|||+.|+++...+ ..|+.++++.
T Consensus 244 ----------~~~~~i~~~d~--~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~---~~l~~~~~~~ 299 (314)
T 1pjx_A 244 ----------WGSSHIEVFGP--DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN---NAVWKFEWQR 299 (314)
T ss_dssp ----------ETTTEEEEECT--TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT---TEEEEEECSS
T ss_pred ----------cCCCEEEEEcC--CCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCC---CeEEEEeCCC
Confidence 12457888884 22433444443334566789999999887765433 2688888765
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-08 Score=114.45 Aligned_cols=140 Identities=18% Similarity=0.141 Sum_probs=85.4
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEEcCCCC-
Q 002209 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTP- 722 (953)
Q Consensus 645 ~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~- 722 (953)
.+.|. +...+|.|..... ...++|+|||+|||.+..+..... .+..........|+. .|++|+.++|+-
T Consensus 76 ~sedc--l~lnv~~P~~~~~-~~~~~PV~v~iHGGg~~~Gs~~~~------~~~~~~~~~~~~la~~~~vvvV~~nYRLg 146 (579)
T 2bce_A 76 GNEDC--LYLNIWVPQGRKE-VSHDLPVMIWIYGGAFLMGASQGA------NFLSNYLYDGEEIATRGNVIVVTFNYRVG 146 (579)
T ss_dssp SCSCC--CEEEEEEEECSSS-CCCSEEEEEECCCCSEEEC-------------CTTGGGCCHHHHHHHTCEEEEECCCCH
T ss_pred CCCCC--CEEEEEECCCCCC-CCCCCeEEEEECCCcccCCCCCcc------ccccccccChHHHhcCCCEEEEEeCCccc
Confidence 34565 4456778865321 123589999999986543322100 000000000234554 579999988862
Q ss_pred CCCCCChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh--CCCcccEEEEcccC
Q 002209 723 IIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGA 793 (953)
Q Consensus 723 ~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~ 793 (953)
..|+.............+.|+.+|++|+.++ ...|+++|.|+|+|+||.++..++.. ...+|+++|+.+|.
T Consensus 147 ~~Gfl~~~~~~~pgn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~ 222 (579)
T 2bce_A 147 PLGFLSTGDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp HHHHCCCSSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred cccCCcCCCCCCCCccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCC
Confidence 2232211100111123478999999999875 24799999999999999999888764 34689999999875
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-06 Score=96.68 Aligned_cols=104 Identities=6% Similarity=0.039 Sum_probs=67.8
Q ss_pred CcccccccCCC-CcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPD-EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpD-G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..+..++|+|+ ++.|+..+.+ +.|.+||+..+....... .....+..++|+|||
T Consensus 150 ~~V~~v~~~p~~~~~las~s~D-------------g~v~iwD~~~~~~~~~~~------------~~~~~v~~v~wspdg 204 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVCLAD-------------GSIAVLQVTETVKVCATL------------PSTVAVTSVCWSPKG 204 (434)
T ss_dssp GSEEEEEECSSCTTEEEEEETT-------------SCEEEEEESSSEEEEEEE------------CGGGCEEEEEECTTS
T ss_pred CceEEEEECCCCCCEEEEEECC-------------CeEEEEEcCCCcceeecc------------CCCCceeEEEEcCCC
Confidence 66888999998 6777766644 389999998653221111 111345689999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc-------cccCCeeeccCCceEEEEEec
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-------LRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~-------~~~~~~~~SpDg~~l~~~~~~ 476 (953)
+.|+.. +..+.|.+||. .+.....+.... ..+..+.|++++..++.....
T Consensus 205 ~~lasg-------------s~dg~v~iwd~---~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 205 KQLAVG-------------KQNGTVVQYLP---TLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp SCEEEE-------------ETTSCEEEECT---TCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred CEEEEE-------------cCCCcEEEEcc---CCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 988776 44567899986 332222332221 256678999999887655443
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-07 Score=94.67 Aligned_cols=163 Identities=13% Similarity=0.030 Sum_probs=90.8
Q ss_pred HcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCcccE
Q 002209 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFCC 786 (953)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~---p~~~~a 786 (953)
..+|.|+.++. .|++. .+.++.+.++.+ . ...++.++||||||.++..++.+. ++.++.
T Consensus 46 ~~~~~v~~~d~---~g~~~----------~~~~~~~~i~~~---~--~~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~ 107 (244)
T 2cb9_A 46 NHKAAVYGFHF---IEEDS----------RIEQYVSRITEI---Q--PEGPYVLLGYSAGGNLAFEVVQAMEQKGLEVSD 107 (244)
T ss_dssp TTTSEEEEECC---CCSTT----------HHHHHHHHHHHH---C--SSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCceEEEEcC---CCHHH----------HHHHHHHHHHHh---C--CCCCEEEEEECHhHHHHHHHHHHHHHcCCCccE
Confidence 46899999665 44432 234444444333 1 135799999999999999998864 567888
Q ss_pred EEEcccCCCCCCCC-cCcccc----cch-hhh----hHHHHHhcCc-ccccCCCCCcEEEEEeC--CCCCCCCchHHHHH
Q 002209 787 GIARSGAYNRTLTP-FGFQNE----DRT-LWE----ATSTYVEMSP-FMSANKLKKPILLVHGE--EDNNSGTLTMQSDR 853 (953)
Q Consensus 787 ~v~~~~~~d~~~~~-~~~~~~----~~~-~~~----~~~~~~~~sp-~~~~~~i~~P~Li~~G~--~D~~v~~~~~~~~~ 853 (953)
+|++++........ ...... ... ... ....+..+.. ......+++|+++++|+ .|. ++ +.....
T Consensus 108 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvl~i~g~~~~D~-~~--~~~~~~ 184 (244)
T 2cb9_A 108 FIIVDAYKKDQSITADTENDDSAAYLPEAVRETVMQKKRCYQEYWAQLINEGRIKSNIHFIEAGIQTET-SG--AMVLQK 184 (244)
T ss_dssp EEEESCCCCCSCCCCC-------CCSCHHHHHHHTHHHHHHHHHHHHCCCCSCBSSEEEEEECSBCSCC-CH--HHHTTS
T ss_pred EEEEcCCCCcccccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCEEEEEccCcccc-cc--ccchhH
Confidence 88877653210000 000000 000 000 0011111111 12346788999999999 886 33 333222
Q ss_pred HHHHHHhCCCcEEEEEeCCCCcc-CCCcccHHHHHHHHHHHHHHh
Q 002209 854 FFNALKGHGALCRLVILPFESHG-YAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~-~~~~~~~~~~~~~i~~fl~~~ 897 (953)
+.+. ...+++++.+|+ +|. +...+....+.+.+.+||.+.
T Consensus 185 w~~~---~~~~~~~~~i~g-gH~~~~~~~~~~~~~~~i~~~L~~~ 225 (244)
T 2cb9_A 185 WQDA---AEEGYAEYTGYG-AHKDMLEGEFAEKNANIILNILDKI 225 (244)
T ss_dssp SGGG---BSSCEEEEECSS-BGGGTTSHHHHHHHHHHHHHHHHTC
T ss_pred HHHh---cCCCCEEEEecC-ChHHHcChHHHHHHHHHHHHHHhcC
Confidence 2111 123589999997 893 223455667777788887654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-06 Score=98.29 Aligned_cols=151 Identities=13% Similarity=0.130 Sum_probs=92.4
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCC-----ce------eecccCCCccccccccceEEecC-Ce
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-----KA------RPLFQSPDIYLNAIFDNFVWVNN-ST 256 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g-----~~------~~lt~~~~~~~~~~~~~~~wspD-g~ 256 (953)
..+...+|||||++|+..... +.....|.++|++++ +. .++... ....+..++|+|+ ++
T Consensus 93 ~~v~~l~~spdg~~lav~~~s-----gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----h~~~V~~v~~~p~~~~ 163 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMS-----SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD----AGGMVIDMKWNPTVPS 163 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEE-----TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS----GGGSEEEEEECSSCTT
T ss_pred CcccEEEEcCCCCEEEEEEec-----cCCCceEEEEEccccccCCcCCcceeeeeeccCC----CCCceEEEEECCCCCC
Confidence 358889999999999863210 234667888887654 11 111111 1223778999998 67
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCC-Cc
Q 002209 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-AV 333 (953)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~-~~ 333 (953)
.|+... ..+.|.++|+ ++.... .... ..
T Consensus 164 ~las~s-------------------------------------------------~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 164 MVAVCL-------------------------------------------------ADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp EEEEEE-------------------------------------------------TTSCEEEEEESSSEEEEEEECGGGC
T ss_pred EEEEEE-------------------------------------------------CCCeEEEEEcCCCcceeeccCCCCc
Confidence 777551 2245667787 663322 2222 57
Q ss_pred ccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002209 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (953)
Q Consensus 334 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i 413 (953)
+..++|||||++|+..+.++ .|.+||+++...+.+........ .....+..+.|++++..+
T Consensus 195 v~~v~wspdg~~lasgs~dg-------------~v~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~v~w~~~~~~l 255 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNG-------------TVVQYLPTLQEKKVIPCPPFYES------DHPVRVLDVLWIGTYVFA 255 (434)
T ss_dssp EEEEEECTTSSCEEEEETTS-------------CEEEECTTCCEEEEECCCTTCCT------TSCEEEEEEEEEETTEEE
T ss_pred eeEEEEcCCCCEEEEEcCCC-------------cEEEEccCCcccccccCCcccCC------CCceeEEEEEEecCceEE
Confidence 88999999999999887443 89999998554444433221100 001234679999988654
Q ss_pred eEE
Q 002209 414 LYW 416 (953)
Q Consensus 414 ~~~ 416 (953)
+..
T Consensus 256 ~~~ 258 (434)
T 2oit_A 256 IVY 258 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-05 Score=89.83 Aligned_cols=225 Identities=8% Similarity=-0.080 Sum_probs=121.1
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce-eecc---cCCC
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLF---QSPD 239 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt---~~~~ 239 (953)
.|++++..+ +....+... ..... ++|+|||+.|+.... .+...||+++.+++.. +.+. ....
T Consensus 153 ~I~~id~~~----g~~~~~~~~--~~~~~-ia~~~~g~~l~~~d~-------~~~~~I~~~d~~~~~~~~~~g~~~~~~~ 218 (409)
T 3hrp_A 153 RVRLISVDD----NKVTTVHPG--FKGGK-PAVTKDKQRVYSIGW-------EGTHTVYVYMKASGWAPTRIGQLGSTFS 218 (409)
T ss_dssp EEEEEETTT----TEEEEEEET--CCBCB-CEECTTSSEEEEEBS-------STTCEEEEEEGGGTTCEEEEEECCTTSC
T ss_pred cEEEEECCC----CEEEEeecc--CCCCc-eeEecCCCcEEEEec-------CCCceEEEEEcCCCceeEEeeeccchhc
Confidence 578888732 333333321 22334 999999998777542 1233899999887654 2231 1011
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEE
Q 002209 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (953)
Q Consensus 240 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 319 (953)
.. ...++++|++..|++.. ....|+++
T Consensus 219 ~~----p~~iav~p~~g~lyv~d-------------------------------------------------~~~~I~~~ 245 (409)
T 3hrp_A 219 GK----IGAVALDETEEWLYFVD-------------------------------------------------SNKNFGRF 245 (409)
T ss_dssp SC----CCBCEECTTSSEEEEEC-------------------------------------------------TTCEEEEE
T ss_pred CC----cEEEEEeCCCCeEEEEE-------------------------------------------------CCCcEEEE
Confidence 11 45788999655666550 22468888
Q ss_pred Ec-CCceeEe----CCC-Ccc--c-ccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 320 SL-DGTVKEI----GPP-AVY--T-SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 320 ~~-~g~~~~l----~~~-~~~--~-~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
+. ++....+ ... ... . .++|+|++..|+++... ...|++++.++. ...+.........
T Consensus 246 d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~------------~~~I~~~~~~g~-~~~~~g~~~~~g~ 312 (409)
T 3hrp_A 246 NVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN------------LSSVYKITPDGE-CEWFCGSATQKTV 312 (409)
T ss_dssp ETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT------------TTEEEEECTTCC-EEEEEECTTCCSC
T ss_pred ECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC------------CCEEEEEecCCC-EEEEEeCCCCCCc
Confidence 88 6655444 222 112 2 78999987777766522 247889988876 3333222100000
Q ss_pred C--ccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec--------------
Q 002209 391 P--IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-------------- 454 (953)
Q Consensus 391 p--~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~-------------- 454 (953)
. .........+..++++|||+ +|+++. .....|+++++ ..+....+...
T Consensus 313 ~dg~~~~~~~~~P~gia~d~dG~--lyvad~----------~~~~~I~~~~~---~~G~v~~~~g~~~~~g~~~g~~~~~ 377 (409)
T 3hrp_A 313 QDGLREEALFAQPNGMTVDEDGN--FYIVDG----------FKGYCLRKLDI---LDGYVSTVAGQVDVASQIDGTPLEA 377 (409)
T ss_dssp BCEEGGGCBCSSEEEEEECTTCC--EEEEET----------TTTCEEEEEET---TTTEEEEEEECTTCBSCCCBSTTTC
T ss_pred CCCcccccEeCCCeEEEEeCCCC--EEEEeC----------CCCCEEEEEEC---CCCEEEEEeCCCCCCCcCCCChhce
Confidence 0 00001113356799999997 444322 03457888884 33444444322
Q ss_pred -ccccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 455 -DLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 455 -~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
......+++++||. |+++...+ .+|+.++
T Consensus 378 ~~~~P~giavd~~g~-lyVad~~n---~~Ir~i~ 407 (409)
T 3hrp_A 378 TFNYPYDICYDGEGG-YWIAEAWG---KAIRKYA 407 (409)
T ss_dssp CBSSEEEEEECSSSE-EEEEESTT---CEEEEEE
T ss_pred EeCCceEEEEcCCCC-EEEEECCC---CeEEEEE
Confidence 01234578888854 44443322 2565554
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.9e-07 Score=101.39 Aligned_cols=86 Identities=17% Similarity=0.080 Sum_probs=66.9
Q ss_pred HHHH-cCcEEEEcCCCCCCCCCChhhhh--h----------hHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHH
Q 002209 707 LWLA-RGFAILGGPTTPIIGEGDEEAND--R----------FVEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAFM 772 (953)
Q Consensus 707 ~la~-~G~~V~~~~~~~~~G~G~~~~~~--~----------~~~~~~~D~~~~~~~l~~~~-~~d~~~i~l~G~S~GG~~ 772 (953)
.+|+ .|+.|+. .+.+|+|+|.... . ..++.++|+...++++.... .....++.++||||||.+
T Consensus 63 ~lA~~~~~~Vi~---~DhRg~G~S~p~~~~~~~~~~~l~~lt~~q~~~Dl~~~~~~l~~~~~~~~~~p~il~GhS~GG~l 139 (446)
T 3n2z_B 63 DVAEELKAMLVF---AEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAENQPVIAIGGSYGGML 139 (446)
T ss_dssp HHHHHHTEEEEE---ECCTTSTTCCTTGGGGGSCTTTSTTCSHHHHHHHHHHHHHHHHHHSTTGGGCCEEEEEETHHHHH
T ss_pred HHHHHhCCcEEE---EecCCCCCCCCCCccccccchhhccCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEeCHHHHH
Confidence 4554 5889999 5667888884311 1 25788999999999998752 223458999999999999
Q ss_pred HHHHHHhCCCcccEEEEcccCCC
Q 002209 773 TANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 773 a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
|++++.++|+++.++|+.+++..
T Consensus 140 A~~~~~~yP~~v~g~i~ssapv~ 162 (446)
T 3n2z_B 140 AAWFRMKYPHMVVGALAASAPIW 162 (446)
T ss_dssp HHHHHHHCTTTCSEEEEETCCTT
T ss_pred HHHHHHhhhccccEEEEeccchh
Confidence 99999999999999998776543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-06 Score=94.73 Aligned_cols=287 Identities=9% Similarity=-0.073 Sum_probs=131.9
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccc-cCCCCcceEEEEECCCCceeecccCC-Ccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAE-DSSSSKLRVWVADVDTGKARPLFQSP-DIY 241 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~-~~~~~~~~l~~~d~~~g~~~~lt~~~-~~~ 241 (953)
.+.++|..+ .+ .+..++.+... .+.+||||++|+.+...... ..+.....|.++|+.+++...-...+ ..+
T Consensus 47 ~vsvID~~t----~~--v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGC----GV--TLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEETTT----TE--EEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred eEEEEECCC----Ce--EEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence 578888743 22 22223333334 79999999999887532100 01122567999999998764432222 000
Q ss_pred c--cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEE
Q 002209 242 L--NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (953)
Q Consensus 242 ~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 319 (953)
. ......+++||||++++++.......... .+.+...-..+...... .+.......++.....+.+..+
T Consensus 120 ~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V--------~~iD~~tv~~i~v~~~~-~~~p~g~~~~~~~~~dg~~~~v 190 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGL--------SVPGASDDQLTKSASCF-HIHPGAAATHYLGSCPASLAAS 190 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEECSSSCEEEE--------EETTTEEEEEEECSSCC-CCEEEETTEEECCCCTTSCEEE
T ss_pred cccCCCcceEEEcCCCCEEEEEccCCCCeEEE--------EEEchhhceEEECCCce-EEccCCCeEEEEEcCCCCEEEE
Confidence 0 00134889999999999872211000000 00000000000000000 0000000001111123344455
Q ss_pred Ec-C-----CceeEeC---CCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 320 SL-D-----GTVKEIG---PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 320 ~~-~-----g~~~~l~---~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
++ + |+..... -.-. ..+..++|++.++|++. +.+++.|+.++..+.+.........
T Consensus 191 d~~~~~~~~~~v~~~~t~~i~vg-~~P~~~~~~~~~~~vs~--------------~~V~viD~~~~~~~v~~~~~~~~~~ 255 (368)
T 1mda_H 191 DLAAAPAAAGIVGAQCTGAQNCS-SQAAQANYPGMLVWAVA--------------SSILQGDIPAAGATMKAAIDGNESG 255 (368)
T ss_dssp ECCSSCCCCEECCCCSCTTSCBC-SCCEEETTTTEEEECBS--------------SCCEEEECCSSCCEEECCCCSSCTH
T ss_pred ECccccccCCeEEEEeeeeeeCC-CCccccccCCEEEEEcC--------------CEEEEEECCCCcceEEEEEEecccc
Confidence 55 3 3221100 0000 01112777777777763 3788888875443333322111000
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCce
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLA 469 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~~ 469 (953)
.........+...++++|||+++++......+. . . ...+.+.++|+ ...+. ..+.-+ ....++.|+|||++
T Consensus 256 ~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~-~-~--~~~~~~~ViD~---~t~~vv~~i~vg-~~p~gi~~s~Dg~~ 327 (368)
T 1mda_H 256 RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS-C-L--AAAENTSSVTA---SVGQTSGPISNG-HDSDAIIAAQDGAS 327 (368)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECSSC-T-T--SCEEEEEEEES---SSCCEEECCEEE-EEECEEEECCSSSC
T ss_pred ccccccccCcceeeEEcCCCCEEEEEeccccCc-c-c--ccCCCEEEEEC---CCCeEEEEEECC-CCcceEEECCCCCE
Confidence 000000012223378999999866652211000 0 0 00124558885 33332 223222 24677999999999
Q ss_pred EEEEEecccCceEEEEEcCCCC
Q 002209 470 LVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
++++.+.... .|.++|+.+.
T Consensus 328 l~va~~~~~~--~VsVID~~t~ 347 (368)
T 1mda_H 328 DNYANSAGTE--VLDIYDAASD 347 (368)
T ss_dssp EEEEEETTTT--EEEEEESSSC
T ss_pred EEEEccCCCC--eEEEEECCCC
Confidence 8888762223 7999999885
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.51 E-value=5.5e-06 Score=87.79 Aligned_cols=147 Identities=11% Similarity=-0.020 Sum_probs=73.5
Q ss_pred cceEEEEEc-CCce-eEeCCC----CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCC
Q 002209 313 TTQLVLVSL-DGTV-KEIGPP----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL 386 (953)
Q Consensus 313 ~~~l~~~~~-~g~~-~~l~~~----~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~ 386 (953)
...|.++|+ +|+. +.+..+ ..+...+|||||+.++..+.+.. ....-.+.....|.+||.+++....+.....
T Consensus 202 D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~-~w~laSGs~D~tIklWd~~tgk~l~v~~~~~ 280 (356)
T 2w18_A 202 MNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA-KESESLRSPVFQLIVINPKTTLSVGVMLYCL 280 (356)
T ss_dssp TSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-------------CCEEEEEEETTTTEEEEEEEECC
T ss_pred CCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC-cceeeccCCCcEEEEEECCCCEEEEEEEeec
Confidence 356778898 8863 445432 23344579999999876653211 1111123345688999998665432211000
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccC-Ceeecc
Q 002209 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYG-GISWCD 465 (953)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~-~~~~Sp 465 (953)
|. +.... -+..+.+|..++-. +..+.|.+||+ .++.....+..+...+. .++|||
T Consensus 281 ----p~---Gh~~~--~lsg~~sg~~lASg-------------S~DgTIkIWDl--~tGk~l~tL~gH~~~vvs~vafSP 336 (356)
T 2w18_A 281 ----PP---GQAGR--FLEGDVKDHCAAAI-------------LTSGTIAIWDL--LLGQCTALLPPVSDQHWSFVKWSG 336 (356)
T ss_dssp ----CT---TCCCC--EEEEEEETTEEEEE-------------ETTSCEEEEET--TTCSEEEEECCC--CCCCEEEECS
T ss_pred ----cC---CCcce--eEccccCCCEEEEE-------------cCCCcEEEEEC--CCCcEEEEecCCCCCeEEEEEECC
Confidence 00 00000 01111112222211 33557899997 33333344544444344 489999
Q ss_pred CCceEEEEEecccCceEEEEE
Q 002209 466 DSLALVYESWYKTRRTRTWVI 486 (953)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~ 486 (953)
||++|+..+.+++ .+||.+
T Consensus 337 DG~~LaSGS~D~T--IklWd~ 355 (356)
T 2w18_A 337 TDSHLLAGQKDGN--IFVYHY 355 (356)
T ss_dssp SSSEEEEECTTSC--EEEEEE
T ss_pred CCCEEEEEECCCc--EEEecC
Confidence 9999998876553 367754
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.1e-08 Score=113.27 Aligned_cols=128 Identities=18% Similarity=0.137 Sum_probs=82.9
Q ss_pred EEEEEEcCCCCCCC-CCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHc-CcEEEEcCCCCC-CCCCC
Q 002209 652 LSATLYLPPGYDPS-KDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-GFAILGGPTTPI-IGEGD 728 (953)
Q Consensus 652 ~~~~l~~P~~~~~~-~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G~~V~~~~~~~~-~G~G~ 728 (953)
+...+|.|...... ...++|+|||+|||.+..+.. ..+. ...|+++ |++|+.++|+-. .|+..
T Consensus 112 L~l~v~~P~~~~~~~~~~~~Pv~v~iHGGg~~~g~~--------~~~~------~~~la~~~~~vvv~~~YRl~~~Gfl~ 177 (574)
T 3bix_A 112 LYLNIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTG--------NLYD------GSVLASYGNVIVITVNYRLGVLGFLS 177 (574)
T ss_dssp CEEEEEEEC--------CCEEEEEECCCSSSSSCCG--------GGSC------CHHHHHHHTCEEEEECCCCHHHHHCC
T ss_pred CEEEEEECCCCCcCCCCCCCcEEEEECCCcccCCCC--------CccC------chhhhccCCEEEEEeCCcCcccccCc
Confidence 45678888753211 123589999999986554322 1121 1245654 699999888621 12211
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCC---CcccEEEEcccC
Q 002209 729 EEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGA 793 (953)
Q Consensus 729 ~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~ 793 (953)
.......+...+.|+.++++|+.++ ...|+++|.|+|+|+||.++..++.... .+|+.+|+.+|.
T Consensus 178 ~~~~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg~ 248 (574)
T 3bix_A 178 TGDQAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSGT 248 (574)
T ss_dssp CSSSSCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESCC
T ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcCC
Confidence 1111111245689999999999885 2379999999999999999998887543 469999998874
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.50 E-value=5.8e-07 Score=96.25 Aligned_cols=106 Identities=16% Similarity=0.100 Sum_probs=72.6
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCC-CCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSP-NEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~ 748 (953)
.|.||++||...... ..+. ..| ......|+++||.|+.+ +..|+|.+............++.++++
T Consensus 8 ~~~vVlvHG~~~~~~------~~~~~~~w----~~l~~~L~~~G~~V~~~---d~~g~g~s~~~~~~~~~l~~~i~~~l~ 74 (320)
T 1ys1_X 8 RYPIILVHGLTGTDK------YAGVLEYW----YGIQEDLQQRGATVYVA---NLSGFQSDDGPNGRGEQLLAYVKTVLA 74 (320)
T ss_dssp SSCEEEECCTTCCSE------ETTTEESS----TTHHHHHHHTTCCEEEC---CCCSSCCSSSTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCcc------ccchHHHH----HHHHHHHHhCCCEEEEE---cCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 567899999532110 0000 112 23566788999999994 446777664433334555555555554
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCC
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (953)
.+ +.+++.|+||||||.++..++.++|++++++|.+++..
T Consensus 75 ~~------~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p~ 114 (320)
T 1ys1_X 75 AT------GATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPH 114 (320)
T ss_dssp HH------CCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred Hh------CCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCCC
Confidence 43 34689999999999999999999999999999998754
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.49 E-value=8.5e-06 Score=87.27 Aligned_cols=246 Identities=13% Similarity=0.082 Sum_probs=126.8
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecC-CeEEEEEecCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN-STLLVCTIPLLRGD 268 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD-g~~l~~~~~~~~~~ 268 (953)
....++|++||+ |++..... .........|+++++.+++.+.+...........+..+.+++| |+.++..
T Consensus 19 ~~~~~~~~~~g~-l~~~~~~~-~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~------- 89 (314)
T 1pjx_A 19 GAEGPVFDKNGD-FYIVAPEV-EVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD------- 89 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTC-EETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-------
T ss_pred CccCceECCCCC-EEEEEecc-ccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-------
Confidence 456799999995 55541000 0001124579999988888765543100000011557889999 7644432
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEe-CCC------CcccccccCC
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEI-GPP------AVYTSLDPSP 341 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l-~~~------~~~~~~~~Sp 341 (953)
....|++++.+|+.+.+ ... ..+..++++|
T Consensus 90 -------------------------------------------~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~ 126 (314)
T 1pjx_A 90 -------------------------------------------MRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY 126 (314)
T ss_dssp -------------------------------------------TTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT
T ss_pred -------------------------------------------CCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECC
Confidence 11257778776665555 321 3466789999
Q ss_pred CCcEEEEEEecCC---ccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeec----cCCCCce
Q 002209 342 DEKYILISSIHRP---YSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR----SDKPSTL 414 (953)
Q Consensus 342 DG~~l~~~~~~~~---~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ws----pDg~~i~ 414 (953)
||+..+ +..... ..+..........|+.++.+ +..+.+.... .....++|+ |||+.++
T Consensus 127 ~g~l~v-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~-------------~~~~~i~~~~~~d~dg~~l~ 191 (314)
T 1pjx_A 127 EGNLWI-TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF-------------QFPNGIAVRHMNDGRPYQLI 191 (314)
T ss_dssp TSCEEE-EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE-------------SSEEEEEEEECTTSCEEEEE
T ss_pred CCCEEE-EecCcccccccccccccCCCCeEEEECCC-CCEEEeccCC-------------CCcceEEEecccCCCCCEEE
Confidence 997544 432210 00000000112368888776 3333332110 122468899 9997554
Q ss_pred EEEEeccCCCcccccccCCeEEEEecCCCCCCCce---EEeecc----cccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE---ILHKLD----LRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~---~l~~~~----~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
+. + ...+.|++++. ...++.. .+.... .....+++++||+. +++...+ ..|++++
T Consensus 192 v~-~-----------~~~~~i~~~~~--~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l-~v~~~~~---~~i~~~d 253 (314)
T 1pjx_A 192 VA-E-----------TPTKKLWSYDI--KGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL-LVANWGS---SHIEVFG 253 (314)
T ss_dssp EE-E-----------TTTTEEEEEEE--EETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE-EEEEETT---TEEEEEC
T ss_pred EE-E-----------CCCCeEEEEEC--CCCCccccceEEEECCCCCCCCCCceEECCCCCE-EEEEcCC---CEEEEEc
Confidence 43 1 12457888875 1122211 121111 33456889999964 4433222 2688999
Q ss_pred CCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 488 PGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.+++. ....+ ........+ +.++|||++|+...
T Consensus 254 ~~~g~-~~~~~-~~~~~~~~~------i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 254 PDGGQ-PKMRI-RCPFEKPSN------LHFKPQTKTIFVTE 286 (314)
T ss_dssp TTCBS-CSEEE-ECSSSCEEE------EEECTTSSEEEEEE
T ss_pred CCCCc-EeEEE-eCCCCCcee------EEECCCCCEEEEEe
Confidence 88542 22222 222122222 67899998776664
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.49 E-value=4.7e-07 Score=98.13 Aligned_cols=170 Identities=11% Similarity=0.004 Sum_probs=94.8
Q ss_pred HcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---CCCcccE
Q 002209 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH---APHLFCC 786 (953)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~---~p~~~~a 786 (953)
..+|.|+.++ ..|+|.+............++.+.+..+. ...++.++||||||.++..++.+ +|++++.
T Consensus 125 ~~~~~v~~~d---~~g~~~~~~~~~~~~~~a~~~~~~i~~~~-----~~~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~ 196 (329)
T 3tej_A 125 DPQWSIIGIQ---SPRPNGPMQTAANLDEVCEAHLATLLEQQ-----PHGPYYLLGYSLGGTLAQGIAARLRARGEQVAF 196 (329)
T ss_dssp CTTCEEEEEC---CCTTTSHHHHCSSHHHHHHHHHHHHHHHC-----SSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCeEEEee---CCCCCCCCCCCCCHHHHHHHHHHHHHHhC-----CCCCEEEEEEccCHHHHHHHHHHHHhcCCcccE
Confidence 4689999954 45666654433344555655555544331 12589999999999999999998 9999999
Q ss_pred EEEcccCCCCC----CC-CcCccccc--------------------chhhhh-HHHHHhc-C--cccccCCCCCcEEEEE
Q 002209 787 GIARSGAYNRT----LT-PFGFQNED--------------------RTLWEA-TSTYVEM-S--PFMSANKLKKPILLVH 837 (953)
Q Consensus 787 ~v~~~~~~d~~----~~-~~~~~~~~--------------------~~~~~~-~~~~~~~-s--p~~~~~~i~~P~Li~~ 837 (953)
++++.+..... .. ...+.... ...... ...+... . .......+.+|++++.
T Consensus 197 lvl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~l~~ 276 (329)
T 3tej_A 197 LGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGSTSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFV 276 (329)
T ss_dssp EEEESCCCTHHHHTC-----CCCCTHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEE
T ss_pred EEEeCCCCCCccccccccccccChhhHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCCCcCCCeEEEE
Confidence 99887653210 00 00000000 000000 0011100 0 0011245678999999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC-CCcccHHHHHHHHHHHH
Q 002209 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY-AARESIMHVLWETDRWL 894 (953)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~-~~~~~~~~~~~~i~~fl 894 (953)
|+.|..++ ......+. ..-..++++.+++ +|.. ...+....+...+.+||
T Consensus 277 ~~~d~~~~--~~~~~~w~----~~~~~~~~~~v~g-~H~~~~~~~~~~~ia~~l~~~L 327 (329)
T 3tej_A 277 AERTLQEG--MSPERAWS----PWIAELDIYRQDC-AHVDIISPGTFEKIGPIIRATL 327 (329)
T ss_dssp EGGGCCTT--CCHHHHHT----TTEEEEEEEEESS-CGGGGGSTTTHHHHHHHHHHHH
T ss_pred eccCCCCC--CCchhhHH----HhcCCcEEEEecC-ChHHhCCChHHHHHHHHHHHHh
Confidence 99998776 54333332 2223578888985 7863 23333344444555554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.1e-05 Score=82.02 Aligned_cols=195 Identities=10% Similarity=-0.007 Sum_probs=107.5
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
....++++|||+ |+++.+ .....|++++..++....+....... ...+++++||+ |+++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~----p~~i~~~~~g~-l~v~~------- 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSE-------GMYGRVVKLATGSTGTTVLPFNGLYQ----PQGLAVDGAGT-VYVTD------- 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEEC-------SSSCEEEEECC-----EECCCCSCCS----CCCEEECTTCC-EEEEE-------
T ss_pred CccceEECCCCC-EEEEcc-------CCCCcEEEecCCCcccceEeeCCcCC----cceeEECCCCC-EEEEc-------
Confidence 456678999997 544232 13568999998776554432211111 45788999998 55440
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC--CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDG~~l 346 (953)
....|++++. ++....+... .....++++|||+ |
T Consensus 85 ------------------------------------------~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~-l 121 (270)
T 1rwi_B 85 ------------------------------------------FNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-V 121 (270)
T ss_dssp ------------------------------------------TTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCC-E
T ss_pred ------------------------------------------CCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCC-E
Confidence 1235778887 4444434322 4567889999997 4
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (953)
+++... .+.|++++..+......... ....+..+++++||+ +|+.+.
T Consensus 122 ~v~~~~------------~~~i~~~~~~~~~~~~~~~~------------~~~~p~~i~~~~~g~--l~v~~~------- 168 (270)
T 1rwi_B 122 YVADRG------------NNRVVKLAAGSKTQTVLPFT------------GLNDPDGVAVDNSGN--VYVTDT------- 168 (270)
T ss_dssp EEEEGG------------GTEEEEECTTCCSCEECCCC------------SCCSCCCEEECTTCC--EEEEEG-------
T ss_pred EEEECC------------CCEEEEEECCCceeEeeccc------------cCCCceeEEEeCCCC--EEEEEC-------
Confidence 444311 12677776543322211110 012345789999996 444221
Q ss_pred cccccCCeEEEEecCCCCCCCceEEeecc-cccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 427 ~~~~~~~~l~~~d~~~~~g~~~~~l~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
..+.|++++. ++.......... .....+++++|| .|+++...+ ..|++++.++.
T Consensus 169 ----~~~~i~~~~~---~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~---~~v~~~~~~~~ 223 (270)
T 1rwi_B 169 ----DNNRVVKLEA---ESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNT---NQVVKLLAGST 223 (270)
T ss_dssp ----GGTEEEEECT---TTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTT---SCEEEECTTCS
T ss_pred ----CCCEEEEEec---CCCceEeecccCCCCceEEEECCCC-CEEEEECCC---CcEEEEcCCCC
Confidence 2357888885 444333322111 334568999999 555554332 26888888764
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=98.45 E-value=6e-07 Score=91.68 Aligned_cols=156 Identities=10% Similarity=0.054 Sum_probs=84.3
Q ss_pred cEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC---CcccEEEE
Q 002209 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIA 789 (953)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~ 789 (953)
|.|+.++. .|+|.. ..|+.+.++.+. ...++.++|||+||.++..++.+.+ +.++.+|+
T Consensus 43 ~~v~~~d~---~g~~~~----------~~~~~~~i~~~~-----~~~~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl 104 (230)
T 1jmk_C 43 YKLCAFDF---IEEEDR----------LDRYADLIQKLQ-----PEGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIM 104 (230)
T ss_dssp EEEEEECC---CCSTTH----------HHHHHHHHHHHC-----CSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEecC---CCHHHH----------HHHHHHHHHHhC-----CCCCeEEEEECHhHHHHHHHHHHHHHcCCCccEEEE
Confidence 99999555 455432 234444444431 1257999999999999999987653 56888888
Q ss_pred cccCCCCCCCCcC---ccc----------ccc-----hhhhhH----HHHHhcCc-ccccCCCCCcEEEEEeCCCCCCCC
Q 002209 790 RSGAYNRTLTPFG---FQN----------EDR-----TLWEAT----STYVEMSP-FMSANKLKKPILLVHGEEDNNSGT 846 (953)
Q Consensus 790 ~~~~~d~~~~~~~---~~~----------~~~-----~~~~~~----~~~~~~sp-~~~~~~i~~P~Li~~G~~D~~v~~ 846 (953)
+++........+. ... ... ...... ..+..+.. ......+++|+++++|++|..++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~- 183 (230)
T 1jmk_C 105 VDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSEAVKHGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIP- 183 (230)
T ss_dssp ESCCEECCCC--------CCHHHHHHHTTTCSGGGSHHHHHHHHHHHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCC-
T ss_pred ECCCCCCcccccccccHHHHHHHHHhcChhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccEEEEEeCCCCCCc-
Confidence 7654321100000 000 000 000000 01111111 12346788999999999999875
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEeCCCCc--cCCCcccHHHHHHHHHHHH
Q 002209 847 LTMQSDRFFNALKGHGALCRLVILPFESH--GYAARESIMHVLWETDRWL 894 (953)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H--~~~~~~~~~~~~~~i~~fl 894 (953)
. ....+.+ .....++++.+++ +| .+ ..+....+.+.+.+||
T Consensus 184 -~-~~~~w~~---~~~~~~~~~~i~g-~H~~~~-~~~~~~~~~~~i~~~l 226 (230)
T 1jmk_C 184 -E-WLASWEE---ATTGAYRMKRGFG-THAEML-QGETLDRNAGILLEFL 226 (230)
T ss_dssp -T-TEECSGG---GBSSCEEEEECSS-CGGGTT-SHHHHHHHHHHHHHHH
T ss_pred -c-ccchHHH---hcCCCeEEEEecC-ChHHHc-CcHhHHHHHHHHHHHH
Confidence 2 2222211 1223578999998 99 54 3344444555555554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.45 E-value=3.6e-05 Score=80.30 Aligned_cols=193 Identities=8% Similarity=-0.047 Sum_probs=112.6
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.....+++|||+ |+++. . ...|++++.+++....+....... ...+++.+||+ |+++.
T Consensus 68 ~p~~i~~~~~g~-l~v~~-------~--~~~i~~~d~~~~~~~~~~~~~~~~----p~~i~~~~~g~-l~v~~------- 125 (270)
T 1rwi_B 68 QPQGLAVDGAGT-VYVTD-------F--NNRVVTLAAGSNNQTVLPFDGLNY----PEGLAVDTQGA-VYVAD------- 125 (270)
T ss_dssp SCCCEEECTTCC-EEEEE-------T--TTEEEEECTTCSCCEECCCCSCSS----EEEEEECTTCC-EEEEE-------
T ss_pred CcceeEECCCCC-EEEEc-------C--CCEEEEEeCCCceEeeeecCCcCC----CcceEECCCCC-EEEEE-------
Confidence 567789999998 55532 1 458999998887655443221111 45788889997 44430
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC--CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDG~~l 346 (953)
.....|++++. +......... .....++++|||+ |
T Consensus 126 -----------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l 163 (270)
T 1rwi_B 126 -----------------------------------------RGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-V 163 (270)
T ss_dssp -----------------------------------------GGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-E
T ss_pred -----------------------------------------CCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-E
Confidence 02245777766 3333322222 4567889999997 4
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (953)
.++... ...|++++.++........... ..+..+++++|| .+ |+.+
T Consensus 164 ~v~~~~------------~~~i~~~~~~~~~~~~~~~~~~------------~~p~~i~~d~~g-~l-~v~~-------- 209 (270)
T 1rwi_B 164 YVTDTD------------NNRVVKLEAESNNQVVLPFTDI------------TAPWGIAVDEAG-TV-YVTE-------- 209 (270)
T ss_dssp EEEEGG------------GTEEEEECTTTCCEEECCCSSC------------CSEEEEEECTTC-CE-EEEE--------
T ss_pred EEEECC------------CCEEEEEecCCCceEeecccCC------------CCceEEEECCCC-CE-EEEE--------
Confidence 444321 2378899988765443222110 234578999998 33 3322
Q ss_pred cccccCCeEEEEecCCCCCCCceEEee-cccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 427 VEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 427 ~~~~~~~~l~~~d~~~~~g~~~~~l~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
...+.|++++. ++.....+.. .......+++++||+ |+++...+ . +|.+++...
T Consensus 210 ---~~~~~v~~~~~---~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~-~--~v~~~~~~~ 264 (270)
T 1rwi_B 210 ---HNTNQVVKLLA---GSTTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGN-D--RVVKLTSLE 264 (270)
T ss_dssp ---TTTSCEEEECT---TCSCCEECCCCSCSCEEEEEECTTCC-EEEEEGGG-T--EEEEECCCG
T ss_pred ---CCCCcEEEEcC---CCCcceeeccCCCCCceeEEECCCCC-EEEEECCC-C--EEEEEcCCC
Confidence 12446888884 4444333322 123456789999996 55554332 3 688887665
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.43 E-value=6.3e-05 Score=83.14 Aligned_cols=188 Identities=11% Similarity=0.031 Sum_probs=120.7
Q ss_pred cceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 313 TTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
...|+++++ ++....+... .....++|+++++.|+++... ...|+.++++++..+.+.....
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~------------~~~I~r~~~~g~~~~~~~~~~~---- 158 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT------------LDRILRANLNGSNVEEVVSTGL---- 158 (386)
T ss_dssp BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCCEEEEECSSC----
T ss_pred CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCC------------CCcEEEEecCCCCcEEEEeCCC----
Confidence 356888998 5555555544 667789999988888877522 2479999999876655543211
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec-ccccCCeeeccCCce
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLA 469 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~-~~~~~~~~~SpDg~~ 469 (953)
..+..+++.+.+..|++. +. ....|+++++ +|...+.+... ......+++.|++..
T Consensus 159 --------~~p~glavd~~~g~lY~~-d~-----------~~~~I~~~~~---dg~~~~~l~~~~l~~P~giavdp~~g~ 215 (386)
T 3v65_B 159 --------ESPGGLAVDWVHDKLYWT-DS-----------GTSRIEVANL---DGAHRKVLLWQSLEKPRAIALHPMEGT 215 (386)
T ss_dssp --------SCCCCEEEETTTTEEEEE-ET-----------TTTEEEECBT---TSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred --------CCccEEEEEeCCCeEEEE-cC-----------CCCeEEEEeC---CCCceEEeecCCCCCCcEEEEEcCCCe
Confidence 123467888777655443 22 2457888885 66555555432 234567899999999
Q ss_pred EEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCC
Q 002209 470 LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEG 549 (953)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (953)
|+++.+... .+|+++++++. ....+.........+ ++++|+++.|++...
T Consensus 216 ly~td~~~~--~~I~r~~~dG~--~~~~~~~~~~~~PnG------lavd~~~~~lY~aD~-------------------- 265 (386)
T 3v65_B 216 IYWTDWGNT--PRIEASSMDGS--GRRIIADTHLFWPNG------LTIDYAGRRMYWVDA-------------------- 265 (386)
T ss_dssp EEEEECSSS--CEEEEEETTSC--SCEEEECSSCSCEEE------EEEEGGGTEEEEEET--------------------
T ss_pred EEEeccCCC--CEEEEEeCCCC--CcEEEEECCCCCeee------EEEeCCCCEEEEEEC--------------------
Confidence 998865542 48999999874 334443322221122 788988888887752
Q ss_pred CCCeEEEEECCCCceEEEec
Q 002209 550 NIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 550 ~~~~L~~~d~~~~~~~~l~~ 569 (953)
....|+++|+++...+.+..
T Consensus 266 ~~~~I~~~d~dG~~~~~~~~ 285 (386)
T 3v65_B 266 KHHVIERANLDGSHRKAVIS 285 (386)
T ss_dssp TTTEEEEECTTSCSCEEEEC
T ss_pred CCCEEEEEeCCCCeeEEEEE
Confidence 12358899988765555543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.6e-05 Score=85.00 Aligned_cols=201 Identities=11% Similarity=0.029 Sum_probs=120.6
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
....++|+|||+ |+++.. ....|+++++++++...+...... .. ++|+|+|+.|+++..
T Consensus 132 ~P~~la~d~~g~-lyv~d~--------~~~~I~~id~~~g~~~~~~~~~~~-----~~-ia~~~~g~~l~~~d~------ 190 (409)
T 3hrp_A 132 YMWGIAAVGNNT-VLAYQR--------DDPRVRLISVDDNKVTTVHPGFKG-----GK-PAVTKDKQRVYSIGW------ 190 (409)
T ss_dssp CEEEEEECSTTE-EEEEET--------TTTEEEEEETTTTEEEEEEETCCB-----CB-CEECTTSSEEEEEBS------
T ss_pred CceEEEEeCCCC-EEEEec--------CCCcEEEEECCCCEEEEeeccCCC-----Cc-eeEecCCCcEEEEec------
Confidence 456778999997 554321 356899999998887766543321 33 899999998887610
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEe----C-CCCcccccccCCC
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEI----G-PPAVYTSLDPSPD 342 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l----~-~~~~~~~~~~SpD 342 (953)
. +...|++++. ++. .+.+ . .......++++|+
T Consensus 191 --------------------------------~---------~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~ 229 (409)
T 3hrp_A 191 --------------------------------E---------GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDET 229 (409)
T ss_dssp --------------------------------S---------TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTT
T ss_pred --------------------------------C---------CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCC
Confidence 0 1126888888 443 3344 2 2256678999997
Q ss_pred CcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCcc-ceeeccCCCCceEEEEecc
Q 002209 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMR-SINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 343 G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~-~~~wspDg~~i~~~~~~~~ 421 (953)
+.+|++.. . .+.|+++|.+++....+........ ....+. .++|+|++..+++. +
T Consensus 230 ~g~lyv~d-~------------~~~I~~~d~~~~~~~~~~~~~~~g~-------~~~~P~~~ia~~p~~g~lyv~-d--- 285 (409)
T 3hrp_A 230 EEWLYFVD-S------------NKNFGRFNVKTQEVTLIKQLELSGS-------LGTNPGPYLIYYFVDSNFYMS-D--- 285 (409)
T ss_dssp SSEEEEEC-T------------TCEEEEEETTTCCEEEEEECCCCSC-------CCCSSCCEEEEETTTTEEEEE-E---
T ss_pred CCeEEEEE-C------------CCcEEEEECCCCCEEEEecccccCC-------CCCCccccEEEeCCCCEEEEE-e---
Confidence 66777743 1 2379999998766554422111000 001123 79999976655443 2
Q ss_pred CCCcccccccCCeEEEEecCCCCCCCceEEeecc---------------cccCCeeeccCCceEEEEEecccCceEEEEE
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD---------------LRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~---------------~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~ 486 (953)
.....|++++. ++. ...+.... ....++++++||+ |+++..... .+|+++
T Consensus 286 --------~~~~~I~~~~~---~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~--~~I~~~ 350 (409)
T 3hrp_A 286 --------QNLSSVYKITP---DGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKG--YCLRKL 350 (409)
T ss_dssp --------TTTTEEEEECT---TCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTT--CEEEEE
T ss_pred --------CCCCEEEEEec---CCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCC--CEEEEE
Confidence 23457888884 433 33332221 1234589999998 555533032 379999
Q ss_pred cCCCC
Q 002209 487 SPGSK 491 (953)
Q Consensus 487 d~~~~ 491 (953)
++.++
T Consensus 351 ~~~~G 355 (409)
T 3hrp_A 351 DILDG 355 (409)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 96554
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=3.9e-07 Score=102.40 Aligned_cols=108 Identities=11% Similarity=-0.137 Sum_probs=76.7
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEEcCCCCCCCCCChhhh--hhhHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~~ 746 (953)
.|+||++||+... ....+.......|++ .||.|+.+ |.+|+|.+... ........+|+.+.
T Consensus 70 ~p~vvliHG~~~~-------------~~~~w~~~l~~~l~~~~~~~Vi~~---D~~G~G~S~~~~~~~~~~~~~~dl~~l 133 (452)
T 1bu8_A 70 RKTRFIVHGFIDK-------------GEDGWLLDMCKKMFQVEKVNCICV---DWRRGSRTEYTQASYNTRVVGAEIAFL 133 (452)
T ss_dssp SEEEEEECCSCCT-------------TCTTHHHHHHHHHHTTCCEEEEEE---ECHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCC-------------CCchHHHHHHHHHHhhCCCEEEEE---echhcccCchhHhHhhHHHHHHHHHHH
Confidence 6899999996421 101111112345555 49999994 45676665422 12234567788888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
+++|.++..++.+++.|+||||||.+|+.++.++|+++++++.+.|.
T Consensus 134 i~~L~~~~g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa 180 (452)
T 1bu8_A 134 VQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPA 180 (452)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred HHHHHHhcCCCccceEEEEEChhHHHHHHHHHhcccccceEEEecCC
Confidence 99987654455689999999999999999999999999999998775
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.7e-05 Score=82.18 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=69.4
Q ss_pred ceEEEEEcCCc-eeEeCC--C-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCccc
Q 002209 314 TQLVLVSLDGT-VKEIGP--P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAED 389 (953)
Q Consensus 314 ~~l~~~~~~g~-~~~l~~--~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~ 389 (953)
..|++++.+|+ ...+.. . .....++++|||+ |+++... ...|++|+.++.....+.....
T Consensus 142 ~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~------------~~~i~~~~~~g~~~~~~~~~g~--- 205 (286)
T 1q7f_A 142 MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR------------AHCVKVFNYEGQYLRQIGGEGI--- 205 (286)
T ss_dssp TEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGG------------GTEEEEEETTCCEEEEESCTTT---
T ss_pred CEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC-EEEEECC------------CCEEEEEcCCCCEEEEEccCCc---
Confidence 45777777553 333321 2 4567889999998 4444311 2379999998776655543110
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCC-eEEEEecCCCCCCCceEEeeccc--ccCCeeeccC
Q 002209 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRD-IIYTQQAEPVQGEGPEILHKLDL--RYGGISWCDD 466 (953)
Q Consensus 390 ~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~-~l~~~d~~~~~g~~~~~l~~~~~--~~~~~~~SpD 466 (953)
...+..+++++||+ +++. . ...+ .|.+++. ++.....+..... ....++++||
T Consensus 206 --------~~~p~~i~~d~~G~-l~v~-~-----------~~~~~~i~~~~~---~g~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 206 --------TNYPIGVGINSNGE-ILIA-D-----------NHNNFNLTIFTQ---DGQLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp --------SCSEEEEEECTTCC-EEEE-E-----------CSSSCEEEEECT---TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred --------cCCCcEEEECCCCC-EEEE-e-----------CCCCEEEEEECC---CCCEEEEEcccCCCCcceeEEECCC
Confidence 12345789999995 3332 1 1233 7888884 5444444433322 2346899999
Q ss_pred CceEEEEE
Q 002209 467 SLALVYES 474 (953)
Q Consensus 467 g~~l~~~~ 474 (953)
|+ |+++.
T Consensus 262 g~-l~vs~ 268 (286)
T 1q7f_A 262 GS-VVLAS 268 (286)
T ss_dssp TE-EEEEE
T ss_pred Cc-EEEEC
Confidence 97 44443
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-06 Score=92.15 Aligned_cols=118 Identities=14% Similarity=-0.040 Sum_probs=76.2
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhh
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA 731 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~ 731 (953)
+...++.|.. .+.. ..+.||++||.... ....|.......|.++||.|+.++. .|+|.+.
T Consensus 50 L~~~i~~p~~-~~~~--~~~pVVLvHG~~~~-------------~~~~w~~~l~~~L~~~Gy~V~a~Dl---pG~G~~~- 109 (316)
T 3icv_A 50 LDAGLTCQGA-SPSS--VSKPILLVPGTGTT-------------GPQSFDSNWIPLSAQLGYTPCWISP---PPFMLND- 109 (316)
T ss_dssp HHHTEEETTB-BTTB--CSSEEEEECCTTCC-------------HHHHHTTTHHHHHHHTTCEEEEECC---TTTTCSC-
T ss_pred HhhhEeCCCC-CCCC--CCCeEEEECCCCCC-------------cHHHHHHHHHHHHHHCCCeEEEecC---CCCCCCc-
Confidence 4445556643 2222 24568889995211 0001111345678889999999555 4555432
Q ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCcccEEEEcccCCC
Q 002209 732 NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFCCGIARSGAYN 795 (953)
Q Consensus 732 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~~~~d 795 (953)
.....+++.+.++.+.+... .+++.|+||||||.++.+++.++ +++++.+|++++...
T Consensus 110 ----~~~~~~~la~~I~~l~~~~g--~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~ 170 (316)
T 3icv_A 110 ----TQVNTEYMVNAITTLYAGSG--NNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 170 (316)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTT--SCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred ----HHHHHHHHHHHHHHHHHHhC--CCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCCC
Confidence 23345566777777766532 36899999999999998877765 589999999998755
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-05 Score=91.66 Aligned_cols=260 Identities=13% Similarity=0.012 Sum_probs=131.5
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEe-c-cCCCeEEEEEeecc--------c-cCCCCcceEEEEECCCCcee
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTW-S-QDGKHLAFSIRIDA--------E-DSSSSKLRVWVADVDTGKAR 232 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~w-S-PDG~~laf~~~~~~--------~-~~~~~~~~l~~~d~~~g~~~ 232 (953)
.|.+.|+.+ .+...+..++.+......++ + ||+++|+...+... . ........+-++|.++.+..
T Consensus 113 rVavIdl~t----~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~ 188 (595)
T 1fwx_A 113 RVARVRCDV----MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVA 188 (595)
T ss_dssp EEEEEETTT----TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEE
T ss_pred EEEEEECCC----ceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEE
Confidence 467888744 44444445665555666666 5 99999855432110 0 01223557889999987643
Q ss_pred -ecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCc-cccch-hhhhhcCCcchhhhhh
Q 002209 233 -PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRD-IIQVR-TFQDLLKDEYDEDLFD 309 (953)
Q Consensus 233 -~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~d~~~~~ 309 (953)
++.-..+ ...++.+|||++++++.......... . .....+... ....+ ..... -.+++..
T Consensus 189 ~qI~Vgg~------pd~~~~spdGk~~~vt~~~se~~~~i-~------~~~~~~~d~v~V~~~~~~~~~---v~~Gk~~- 251 (595)
T 1fwx_A 189 WQVLVSGN------LDNCDADYEGKWAFSTSYNSEKGMTL-P------EMTAAEMDHIVVFNIAEIEKA---IAAGDYQ- 251 (595)
T ss_dssp EEEEESSC------CCCEEECSSSSEEEEEESCTTCCSSH-H------HHTCCSEEEEEEEEHHHHHHH---HHHTCSE-
T ss_pred EEEEeCCC------ccceEECCCCCEEEEEecCcccCcch-h------hccccccceEEEeeccceeEe---ccCCCee-
Confidence 3322122 44788999999999885432221000 0 000000000 00000 00000 0111111
Q ss_pred hhccceEEEEEc-C--Cce--eEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE---Ee
Q 002209 310 YYATTQLVLVSL-D--GTV--KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR---EL 381 (953)
Q Consensus 310 ~~~~~~l~~~~~-~--g~~--~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~---~l 381 (953)
.-+.+.++|. + ++. ..+..+.....+.+|||||+++.+.. ....+.++|++..+.. .|
T Consensus 252 --~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~------------~s~~VsVid~~~~~~~~~~~l 317 (595)
T 1fwx_A 252 --ELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGK------------LSPTVTVLDVTRFDAVFYENA 317 (595)
T ss_dssp --EETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECT------------TSSBEEEEEGGGHHHHHHSCC
T ss_pred --EECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCC------------CCCeEEEEECccccccccccc
Confidence 1134778888 5 432 34443355678899999999887752 2348999999843100 00
Q ss_pred ccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCC----CCCC-ceEEeecc-
Q 002209 382 CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV----QGEG-PEILHKLD- 455 (953)
Q Consensus 382 ~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~----~g~~-~~~l~~~~- 455 (953)
.... ..........+++.++|+||| .+|.+... .+++..|+++.. .|.+ ...+..-+
T Consensus 318 ~~~~----~v~~~v~vG~gP~h~aF~~dG--~aY~t~~l-----------dsqV~kwdi~~a~~~~~g~~~~~vi~kidV 380 (595)
T 1fwx_A 318 DPRS----AVVAEPELGLGPLHTAFDGRG--NAYTSLFL-----------DSQVVKWNIEDAIRAYAGEKVDPIKDKLDV 380 (595)
T ss_dssp CGGG----GEEECCBCCSCEEEEEECTTS--EEEEEETT-----------TTEEEEEEHHHHHHHHHTCSCCCEEEEEEC
T ss_pred Cccc----ceEEEcCCCCCcceEEECCCC--eEEEEEec-----------CCcEEEEEhhHhhhhhcccccceeEEEeec
Confidence 0000 000000122467789999999 46764443 346777775210 1111 11221111
Q ss_pred -------cccCCeeeccCCceEEEEEe
Q 002209 456 -------LRYGGISWCDDSLALVYESW 475 (953)
Q Consensus 456 -------~~~~~~~~SpDg~~l~~~~~ 475 (953)
....+...+|||++|+....
T Consensus 381 ~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 381 HYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp SSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred ccccccceeccceEeCCCCCEEEEcCC
Confidence 11134678999999877653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-05 Score=86.74 Aligned_cols=121 Identities=13% Similarity=0.086 Sum_probs=67.3
Q ss_pred cccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 333 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
....++++||+..|+++... ...|.+|+.+ |...+.+..... ...+..++|+| |
T Consensus 197 ~p~gia~d~~~g~l~v~d~~------------~~~I~~~~~~~G~~~~~~~~~~~-----------~~~~~~~~~~p-g- 251 (329)
T 3fvz_A 197 VPHSLALVPHLDQLCVADRE------------NGRIQCFKTDTKEFVREIKHASF-----------GRNVFAISYIP-G- 251 (329)
T ss_dssp CEEEEEEETTTTEEEEEETT------------TTEEEEEETTTCCEEEEECCTTT-----------TTCEEEEEEET-T-
T ss_pred CCcEEEEECCCCEEEEEECC------------CCEEEEEECCCCcEEEEEecccc-----------CCCcceeeecC-C-
Confidence 35678999996667666522 3479999998 655555543211 12345678888 3
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE-Ee---ecccccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-LH---KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~-l~---~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
++|..+.. . .........+++++. ..++... +. ........++++||| .|+.+...+ . +|++++
T Consensus 252 -~~~~~~g~---~-~v~~~~~~~v~~~~~---~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~-~--~I~~~~ 319 (329)
T 3fvz_A 252 -FLFAVNGK---P-YFGDQEPVQGFVMNF---SSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHT-N--TVWKFT 319 (329)
T ss_dssp -EEEEEECC---C-CTTCSCCCCEEEEET---TTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSS-C--CEEEEE
T ss_pred -EEEEeCCC---E-EeccCCCcEEEEEEc---CCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCC-C--EEEEEe
Confidence 44443211 1 111133457888885 3343332 22 122234568999999 555554332 2 577766
Q ss_pred CCC
Q 002209 488 PGS 490 (953)
Q Consensus 488 ~~~ 490 (953)
+++
T Consensus 320 ~~~ 322 (329)
T 3fvz_A 320 LTE 322 (329)
T ss_dssp EEE
T ss_pred CCc
Confidence 554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.8e-05 Score=81.97 Aligned_cols=201 Identities=8% Similarity=0.044 Sum_probs=111.8
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCC-ccccccccceEEe-cCCeEEEEEecCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD-IYLNAIFDNFVWV-NNSTLLVCTIPLLRG 267 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~-~~~~~~~~~~~ws-pDg~~l~~~~~~~~~ 267 (953)
....++++|||+ |+++.. ....|++++.++...+.+..... .........++++ ++|+.++...
T Consensus 31 ~p~~v~~~~~g~-l~v~~~--------~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~----- 96 (286)
T 1q7f_A 31 EPSGVAVNAQND-IIVADT--------NNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER----- 96 (286)
T ss_dssp CEEEEEECTTCC-EEEEEG--------GGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC-----
T ss_pred CCceEEECCCCC-EEEEEC--------CCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcC-----
Confidence 456778999997 444321 25679999988654444422110 0000113467774 6665444320
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCc-eeEeCCC--CcccccccCCCCc
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEIGPP--AVYTSLDPSPDEK 344 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~-~~~l~~~--~~~~~~~~SpDG~ 344 (953)
. ....|++++.+|+ .+.+... .....++++|||+
T Consensus 97 ----------------------------------~---------~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~ 133 (286)
T 1q7f_A 97 ----------------------------------S---------PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR 133 (286)
T ss_dssp ----------------------------------G---------GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSC
T ss_pred ----------------------------------C---------CCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCC
Confidence 0 1245777777554 3334322 4567889999997
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
|+++... ...|++|+.++...+.+..... ...+..++++|||+ +|.++
T Consensus 134 -l~v~~~~------------~~~i~~~~~~g~~~~~~~~~~~-----------~~~p~~i~~~~~g~--l~v~~------ 181 (286)
T 1q7f_A 134 -IIVVECK------------VMRVIIFDQNGNVLHKFGCSKH-----------LEFPNGVVVNDKQE--IFISD------ 181 (286)
T ss_dssp -EEEEETT------------TTEEEEECTTSCEEEEEECTTT-----------CSSEEEEEECSSSE--EEEEE------
T ss_pred -EEEEECC------------CCEEEEEcCCCCEEEEeCCCCc-----------cCCcEEEEECCCCC--EEEEE------
Confidence 4444311 2379999988766555432110 12345789999997 34422
Q ss_pred cccccccCCeEEEEecCCCCCCCceEEeec--ccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~--~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
...+.|++++. ++.....+... ......+++++||+ |+++...+. .+|.+++.++
T Consensus 182 -----~~~~~i~~~~~---~g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~--~~i~~~~~~g 238 (286)
T 1q7f_A 182 -----NRAHCVKVFNY---EGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNN--FNLTIFTQDG 238 (286)
T ss_dssp -----GGGTEEEEEET---TCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSS--CEEEEECTTS
T ss_pred -----CCCCEEEEEcC---CCCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCC--EEEEEECCCC
Confidence 22457888884 44333333222 12345689999996 444433221 2688888665
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.7e-07 Score=101.05 Aligned_cols=108 Identities=11% Similarity=-0.061 Sum_probs=75.9
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHc-CcEEEEcCCCCCCCCCChhhh--hhhHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-GFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~~ 746 (953)
.|+||++||.... ....+.......|+++ ||.|+.+| ..|+|.+... ........+|+.++
T Consensus 70 ~p~vvliHG~~~~-------------~~~~w~~~~~~~l~~~~~~~Vi~~D---~~g~G~S~~~~~~~~~~~~~~dl~~~ 133 (452)
T 1w52_X 70 RKTHFVIHGFRDR-------------GEDSWPSDMCKKILQVETTNCISVD---WSSGAKAEYTQAVQNIRIVGAETAYL 133 (452)
T ss_dssp SCEEEEECCTTCC-------------SSSSHHHHHHHHHHTTSCCEEEEEE---CHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCC-------------CCchHHHHHHHHHHhhCCCEEEEEe---cccccccccHHHHHhHHHHHHHHHHH
Confidence 5889999996311 1011112234455554 99999954 4566665322 12234556788888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
+++|.+...++.+++.|+||||||.+|+.++.++|++++.++...|.
T Consensus 134 i~~L~~~~g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa 180 (452)
T 1w52_X 134 IQQLLTELSYNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPA 180 (452)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred HHHHHHhcCCCcccEEEEEeCHHHHHHHHHHHhcccceeeEEecccc
Confidence 88887543345679999999999999999999999999999998775
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.36 E-value=7.6e-05 Score=82.49 Aligned_cols=180 Identities=11% Similarity=0.081 Sum_probs=117.8
Q ss_pred cceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhh
Q 002209 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (953)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (953)
...|+++++++++...+...... ...++|.+.+..|+++..
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~~~~-----~~gl~~d~~~~~ly~~D~---------------------------------- 135 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNNLEN-----AIALDFHHRRELVFWSDV---------------------------------- 135 (386)
T ss_dssp BSCEEEECTTSCCCEEEECSCSC-----EEEEEEETTTTEEEEEET----------------------------------
T ss_pred CccceeeccCCCcEEEEecCCCc-----cEEEEEecCCCeEEEEeC----------------------------------
Confidence 45799999998776655443222 557899988878887610
Q ss_pred hcCCcchhhhhhhhccceEEEEEc-CCceeEe-CCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc
Q 002209 298 LLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI-GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (953)
Q Consensus 298 ~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l-~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 374 (953)
....|+++++ ++..+.+ ... .....+++.+.+..|+++... ...|++++++
T Consensus 136 --------------~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~------------~~~I~~~~~d 189 (386)
T 3v65_B 136 --------------TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG------------TSRIEVANLD 189 (386)
T ss_dssp --------------TTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETT------------TTEEEECBTT
T ss_pred --------------CCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCC------------CCeEEEEeCC
Confidence 2357889998 4444443 333 456678888888888877522 2378888888
Q ss_pred CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec
Q 002209 375 GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL 454 (953)
Q Consensus 375 g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~ 454 (953)
|+..+.+..... ..++.+++.|++..| ||++.. ....|++++. +|...+.+...
T Consensus 190 g~~~~~l~~~~l------------~~P~giavdp~~g~l-y~td~~----------~~~~I~r~~~---dG~~~~~~~~~ 243 (386)
T 3v65_B 190 GAHRKVLLWQSL------------EKPRAIALHPMEGTI-YWTDWG----------NTPRIEASSM---DGSGRRIIADT 243 (386)
T ss_dssp SCSCEEEECSSC------------SCEEEEEEETTTTEE-EEEECS----------SSCEEEEEET---TSCSCEEEECS
T ss_pred CCceEEeecCCC------------CCCcEEEEEcCCCeE-EEeccC----------CCCEEEEEeC---CCCCcEEEEEC
Confidence 766555443211 234578899877654 553321 1357999985 66555555433
Q ss_pred -ccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 455 -DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 455 -~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
.....+++|+|+++.|+++.... .+|+.++.++.
T Consensus 244 ~~~~PnGlavd~~~~~lY~aD~~~---~~I~~~d~dG~ 278 (386)
T 3v65_B 244 HLFWPNGLTIDYAGRRMYWVDAKH---HVIERANLDGS 278 (386)
T ss_dssp SCSCEEEEEEEGGGTEEEEEETTT---TEEEEECTTSC
T ss_pred CCCCeeeEEEeCCCCEEEEEECCC---CEEEEEeCCCC
Confidence 23356799999999999885433 38999998874
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00016 Score=78.57 Aligned_cols=188 Identities=11% Similarity=0.031 Sum_probs=119.2
Q ss_pred cceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 313 TTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
...|+++++ +.....+... .....++|+++++.|+++... ...|+.++++++..+.+.....
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~------------~~~I~r~~~~g~~~~~~~~~~~---- 115 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT------------LDRILRANLNGSNVEEVVSTGL---- 115 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCSCEEEECSSC----
T ss_pred ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEecc------------CCceEEEecCCCCceEEEeCCC----
Confidence 356888888 4455555444 667788999988888877522 2479999998876555433211
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec-ccccCCeeeccCCce
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLA 469 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~-~~~~~~~~~SpDg~~ 469 (953)
..+..+++.+.+..|++. + ...+.|+++++ +|...+.+... ......+++.|++..
T Consensus 116 --------~~p~glavd~~~g~ly~~-d-----------~~~~~I~~~~~---dG~~~~~l~~~~l~~P~~iavdp~~g~ 172 (349)
T 3v64_C 116 --------ESPGGLAVDWVHDKLYWT-D-----------SGTSRIEVANL---DGAHRKVLLWQSLEKPRAIALHPMEGT 172 (349)
T ss_dssp --------SCCCEEEEETTTTEEEEE-E-----------TTTTEEEEEET---TSCSCEEEECTTCSCEEEEEEETTTTE
T ss_pred --------CCccEEEEecCCCeEEEE-c-----------CCCCeEEEEcC---CCCceEEEEeCCCCCcceEEEecCcCe
Confidence 123467888776655443 2 22457888885 66555555432 234567899999999
Q ss_pred EEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCC
Q 002209 470 LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEG 549 (953)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (953)
|+++.+... .+|+++++++. ..+.+.........+ ++++|+++.|++...
T Consensus 173 ly~td~~~~--~~I~r~~~dG~--~~~~~~~~~~~~PnG------la~d~~~~~lY~aD~-------------------- 222 (349)
T 3v64_C 173 IYWTDWGNT--PRIEASSMDGS--GRRIIADTHLFWPNG------LTIDYAGRRMYWVDA-------------------- 222 (349)
T ss_dssp EEEEECSSS--CEEEEEETTSC--SCEESCCSSCSCEEE------EEEETTTTEEEEEET--------------------
T ss_pred EEEeccCCC--CEEEEEeCCCC--CcEEEEECCCCCcce------EEEeCCCCEEEEEEC--------------------
Confidence 998876542 48999999874 334433222211112 788998888887752
Q ss_pred CCCeEEEEECCCCceEEEec
Q 002209 550 NIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 550 ~~~~L~~~d~~~~~~~~l~~ 569 (953)
....|+++|+++...+.+..
T Consensus 223 ~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 223 KHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp TTTEEEEEETTSCSCEEEEC
T ss_pred CCCEEEEEeCCCCceEEEEe
Confidence 12358999988765555443
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=6.8e-05 Score=81.00 Aligned_cols=235 Identities=6% Similarity=-0.025 Sum_probs=121.3
Q ss_pred ceEEEEEc-CCceeEeCC-C--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc--eEEEeccCCCc
Q 002209 314 TQLVLVSL-DGTVKEIGP-P--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FVRELCDLPLA 387 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~-~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~--~~~~l~~~~~~ 387 (953)
..|+++|. +|+...... . .....++++|||+ |+++... ...|++|+.+++ ....+......
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~------------~~~v~~~~~~g~~~~~~~~~~~~~~ 135 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTDVA------------LHQVFKLDPHSKEGPLLILGRSMQP 135 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEETT------------TTEEEEECTTCSSCCSEEESBTTBC
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEECC------------CCEEEEEeCCCCeEEEEEecccCCC
Confidence 57889998 787654432 2 4567889999999 4444311 237999998876 33433221100
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc----------cc
Q 002209 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD----------LR 457 (953)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~----------~~ 457 (953)
. ........+..++++|++..+++. +. .....|++++. +|.....+.... ..
T Consensus 136 g----~~~~~~~~P~~ia~~~~~g~lyv~-d~----------~~~~~I~~~~~---~g~~~~~~~~~g~~~~~~~~~~~~ 197 (329)
T 3fvz_A 136 G----SDQNHFCQPTDVAVEPSTGAVFVS-DG----------YCNSRIVQFSP---SGKFVTQWGEESSGSSPRPGQFSV 197 (329)
T ss_dssp C----CSTTCCSSEEEEEECTTTCCEEEE-EC----------SSCCEEEEECT---TSCEEEEECEECCSSSCCTTEESC
T ss_pred C----CCccccCCCcEEEEeCCCCeEEEE-eC----------CCCCeEEEEcC---CCCEEEEeccCCCCCCCCCcccCC
Confidence 0 000111245679999943334443 21 02457888874 444333332111 11
Q ss_pred cCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeec-C-CCccccCCCCCCCeEeccCCCEEEEEeeeccCCC
Q 002209 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD-R-SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEG 535 (953)
Q Consensus 458 ~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~ 535 (953)
..+++++||+..|+++...+ .+|.+++.+++ +...... . .....+. +.++| |. ++...+.
T Consensus 198 p~gia~d~~~g~l~v~d~~~---~~I~~~~~~~G--~~~~~~~~~~~~~~~~~------~~~~p-g~--~~~~~g~---- 259 (329)
T 3fvz_A 198 PHSLALVPHLDQLCVADREN---GRIQCFKTDTK--EFVREIKHASFGRNVFA------ISYIP-GF--LFAVNGK---- 259 (329)
T ss_dssp EEEEEEETTTTEEEEEETTT---TEEEEEETTTC--CEEEEECCTTTTTCEEE------EEEET-TE--EEEEECC----
T ss_pred CcEEEEECCCCEEEEEECCC---CEEEEEECCCC--cEEEEEeccccCCCcce------eeecC-CE--EEEeCCC----
Confidence 45689999966676664333 37888888754 2222221 1 1111111 56777 32 2222110
Q ss_pred cEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEE
Q 002209 536 TYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQS 615 (953)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~ 615 (953)
++ ........+++||..+++....+..... .+.... ..++++|| .+++..... ..|++++
T Consensus 260 --~~------v~~~~~~~v~~~~~~~g~~~~~~~~~~~-~~~~p~-------~ia~~~dG-~lyvad~~~---~~I~~~~ 319 (329)
T 3fvz_A 260 --PY------FGDQEPVQGFVMNFSSGEIIDVFKPVRK-HFDMPH-------DIVASEDG-TVYIGDAHT---NTVWKFT 319 (329)
T ss_dssp --CC------TTCSCCCCEEEEETTTCCEEEEECCSSS-CCSSEE-------EEEECTTS-EEEEEESSS---CCEEEEE
T ss_pred --EE------eccCCCcEEEEEEcCCCeEEEEEcCCCC-ccCCee-------EEEECCCC-CEEEEECCC---CEEEEEe
Confidence 11 1111234599999988887766542211 111111 24678888 555544432 2466666
Q ss_pred CC
Q 002209 616 WP 617 (953)
Q Consensus 616 ~~ 617 (953)
+.
T Consensus 320 ~~ 321 (329)
T 3fvz_A 320 LT 321 (329)
T ss_dssp EE
T ss_pred CC
Confidence 43
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.2e-06 Score=90.55 Aligned_cols=103 Identities=15% Similarity=-0.009 Sum_probs=69.5
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~ 749 (953)
.|.||++||...... . .+...| ......|.++||.|+.++. .|+|.+.. .......|+.++++.
T Consensus 7 ~~~vvlvHG~~~~~~-----~-~~~~~~----~~~~~~L~~~G~~v~~~d~---~g~g~s~~---~~~~~~~~i~~~~~~ 70 (285)
T 1ex9_A 7 KYPIVLAHGMLGFDN-----I-LGVDYW----FGIPSALRRDGAQVYVTEV---SQLDTSEV---RGEQLLQQVEEIVAL 70 (285)
T ss_dssp SSCEEEECCTTCCSE-----E-TTEESS----TTHHHHHHHTTCCEEEECC---CSSSCHHH---HHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCCCcc-----c-cccccH----HHHHHHHHhCCCEEEEEeC---CCCCCchh---hHHHHHHHHHHHHHH
Confidence 577899999532110 0 000112 2345678899999999554 57776531 234445555554444
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCC
Q 002209 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (953)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (953)
+ +.+++.|+||||||.++..++.++|+.++++|.+++..
T Consensus 71 ~------~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p~ 109 (285)
T 1ex9_A 71 S------GQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPH 109 (285)
T ss_dssp H------CCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred h------CCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCCC
Confidence 3 34689999999999999999999999999999998853
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00022 Score=76.43 Aligned_cols=188 Identities=11% Similarity=0.074 Sum_probs=114.8
Q ss_pred cceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC----ceEEEeccCCC
Q 002209 313 TTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG----IFVRELCDLPL 386 (953)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g----~~~~~l~~~~~ 386 (953)
...|.++++ +++...+... .....++|+++++.|+++... ...|+.+++++ +....+....
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~------------~~~I~~~~~~g~~~~~~~~~~~~~~- 75 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------------QRMICSTQLDRAHGVSSYDTVISRD- 75 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT------------TTEEEEEEC--------CEEEECSS-
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECC------------CCcEEEEECCCCCCCcccEEEEeCC-
Confidence 356889999 5555444433 667789999998888887632 24788898886 3323222111
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee-cccccCCeeecc
Q 002209 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCD 465 (953)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~-~~~~~~~~~~Sp 465 (953)
...+..+++.+.+..| ||++. ..+.|.++++ +|...+.+.. .......++..|
T Consensus 76 -----------~~~p~glavd~~~~~l-y~~d~-----------~~~~I~~~~~---~g~~~~~~~~~~~~~P~~iavdp 129 (316)
T 1ijq_A 76 -----------IQAPDGLAVDWIHSNI-YWTDS-----------VLGTVSVADT---KGVKRKTLFRENGSKPRAIVVDP 129 (316)
T ss_dssp -----------CSCCCEEEEETTTTEE-EEEET-----------TTTEEEEEET---TSSSEEEEEECTTCCEEEEEEET
T ss_pred -----------CCCcCEEEEeecCCeE-EEEEC-----------CCCEEEEEeC---CCCceEEEEECCCCCcceEEeCC
Confidence 0223567888766654 44322 2457888885 6655555543 234456789999
Q ss_pred CCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCC
Q 002209 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGA 545 (953)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~ 545 (953)
+++.|+++.+... .+|+++++++. ..+.+.........+ ++++++++.|++....
T Consensus 130 ~~g~ly~~d~~~~--~~I~~~~~dG~--~~~~~~~~~~~~P~g------la~d~~~~~lY~~D~~--------------- 184 (316)
T 1ijq_A 130 VHGFMYWTDWGTP--AKIKKGGLNGV--DIYSLVTENIQWPNG------ITLDLLSGRLYWVDSK--------------- 184 (316)
T ss_dssp TTTEEEEEECSSS--CEEEEEETTSC--CEEEEECSSCSCEEE------EEEETTTTEEEEEETT---------------
T ss_pred CCCEEEEEccCCC--CeEEEEcCCCC--CeEEEEECCCCCceE------EEEeccCCEEEEEECC---------------
Confidence 9888888865432 38999998873 333333222211112 7889998888877521
Q ss_pred CCCCCCCeEEEEECCCCceEEEec
Q 002209 546 TPEGNIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 546 ~~~~~~~~L~~~d~~~~~~~~l~~ 569 (953)
...|+++|+++...+.+..
T Consensus 185 -----~~~I~~~d~dg~~~~~~~~ 203 (316)
T 1ijq_A 185 -----LHSISSIDVNGGNRKTILE 203 (316)
T ss_dssp -----TTEEEEEETTSCSCEEEEE
T ss_pred -----CCeEEEEecCCCceEEEee
Confidence 2359999998766655543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00017 Score=75.59 Aligned_cols=182 Identities=13% Similarity=0.023 Sum_probs=106.0
Q ss_pred CCCcceEEEEECCCCceeecccCCC-ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccch
Q 002209 215 SSSKLRVWVADVDTGKARPLFQSPD-IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVR 293 (953)
Q Consensus 215 ~~~~~~l~~~d~~~g~~~~lt~~~~-~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (953)
+.+...|+++|.++|+...-...+. .. ...+.++|||++|+ +
T Consensus 11 ~~~~~~v~~~d~~tG~~~w~~~~~~~~~----~~~~~~~pdG~ilv-s-------------------------------- 53 (276)
T 3no2_A 11 GSGWNKIAIINKDTKEIVWEYPLEKGWE----CNSVAATKAGEILF-S-------------------------------- 53 (276)
T ss_dssp CTTCSEEEEEETTTTEEEEEEECCTTCC----CCEEEECTTSCEEE-E--------------------------------
T ss_pred eCCCCEEEEEECCCCeEEEEeCCCccCC----CcCeEECCCCCEEE-e--------------------------------
Confidence 3357889999997777543322222 11 45778999999777 4
Q ss_pred hhhhhcCCcchhhhhhhhccceEEEEEcCCc-eeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEE
Q 002209 294 TFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (953)
Q Consensus 294 ~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~-~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~ 370 (953)
....++.+|.+|+ ...+..+ ..+.+..++|||+.|+..... ...++.
T Consensus 54 ------------------~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~------------~~~v~~ 103 (276)
T 3no2_A 54 ------------------YSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGH------------PSTILE 103 (276)
T ss_dssp ------------------CBSEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST------------TEEEEE
T ss_pred ------------------CCCCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecCC------------CCEEEE
Confidence 1123445555443 2233222 345567899999988876531 126777
Q ss_pred EeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE
Q 002209 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (953)
Q Consensus 371 ~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~ 450 (953)
++.+|+....+....... .....++.++..+||+.++.. ...+.|+.+|. +| +...
T Consensus 104 vd~~Gk~l~~~~~~~~~~-------~~~~~~~~v~~~~~G~~lv~~-------------~~~~~v~~~d~---~G-~~~w 159 (276)
T 3no2_A 104 VNMKGEVLSKTEFETGIE-------RPHAQFRQINKNKKGNYLVPL-------------FATSEVREIAP---NG-QLLN 159 (276)
T ss_dssp ECTTSCEEEEEEECCSCS-------SGGGSCSCCEECTTSCEEEEE-------------TTTTEEEEECT---TS-CEEE
T ss_pred EeCCCCEEEEEeccCCCC-------cccccccCceECCCCCEEEEe-------------cCCCEEEEECC---CC-CEEE
Confidence 788777666554321100 000123456788999855433 33567888885 54 4332
Q ss_pred EeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 451 LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 451 l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
-.............++|+.|+..... .+|+.+|++++
T Consensus 160 ~~~~~~~~~~~~~~~~g~~~v~~~~~----~~v~~~d~~tG 196 (276)
T 3no2_A 160 SVKLSGTPFSSAFLDNGDCLVACGDA----HCFVQLNLESN 196 (276)
T ss_dssp EEECSSCCCEEEECTTSCEEEECBTT----SEEEEECTTTC
T ss_pred EEECCCCccceeEcCCCCEEEEeCCC----CeEEEEeCcCC
Confidence 22222334456778899877654322 27999999865
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.30 E-value=3.5e-05 Score=87.31 Aligned_cols=209 Identities=12% Similarity=0.041 Sum_probs=112.8
Q ss_pred cccceEecc-----CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEE-e-cCCeEEEEEe
Q 002209 190 KLNFVTWSQ-----DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW-V-NNSTLLVCTI 262 (953)
Q Consensus 190 ~~~~~~wSP-----DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w-s-pDg~~l~~~~ 262 (953)
...+|..|. ||++|+... ..+..|.++|+++.+..+++..+.... ...+++ + ||++++++..
T Consensus 86 d~hh~~~s~t~g~~DG~~lfVnd--------~~~~rVavIdl~t~~~~~ii~ip~g~~---phg~~~~~~p~~~~v~~~~ 154 (595)
T 1fwx_A 86 DLHHVHMSFTEGKYDGRFLFMND--------KANTRVARVRCDVMKCDAILEIPNAKG---IHGLRPQKWPRSNYVFCNG 154 (595)
T ss_dssp CBCCEEEEEETTEEEEEEEEEEE--------TTTTEEEEEETTTTEEEEEEECSSCCS---EEEEEECCSSBCSEEEEEE
T ss_pred CCCccccCCCCCCcCCCEEEEEc--------CCCCEEEEEECCCceEeeEEeCCCCCC---CcceeeeecCCCcEEEEec
Confidence 345588887 998776632 236789999999998777555443211 446666 5 9999998772
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCCCcccccccC
Q 002209 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPPAVYTSLDPS 340 (953)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~~~~~~~~~S 340 (953)
...... .++++.+. + .++ ..+.+..+|. +.++ .++.-++....++.|
T Consensus 155 ~~~~p~--------------~~dg~~l~------~--~~~---------~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~s 203 (595)
T 1fwx_A 155 EDETPL--------------VNDGTNME------D--VAN---------YVNVFTAVDADKWEVAWQVLVSGNLDNCDAD 203 (595)
T ss_dssp CSCEES--------------SCSSSSTT------C--GGG---------EEEEEEEEETTTTEEEEEEEESSCCCCEEEC
T ss_pred cccccc--------------CCCCcccc------c--ccc---------cCceEEEEECCCCeEEEEEEeCCCccceEEC
Confidence 110000 01111000 0 011 2355777888 6543 333322456778899
Q ss_pred CCCcEEEEEEecCCccccc--cCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002209 341 PDEKYILISSIHRPYSFIV--PCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (953)
Q Consensus 341 pDG~~l~~~~~~~~~~~~~--~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~ 418 (953)
|||+++++++...+..... ........+.+.+.. +...+.+||+... .
T Consensus 204 pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~---------------------------~~~~~v~~Gk~~~-i-- 253 (595)
T 1fwx_A 204 YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA---------------------------EIEKAIAAGDYQE-L-- 253 (595)
T ss_dssp SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH---------------------------HHHHHHHHTCSEE-E--
T ss_pred CCCCEEEEEecCcccCcchhhccccccceEEEeecc---------------------------ceeEeccCCCeeE-E--
Confidence 9999998888443210000 000000112222111 1223566776422 1
Q ss_pred eccCCCcccccccCCeEEEEecCCCC--CCC-ceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 419 TQDGGDAKVEVTPRDIIYTQQAEPVQ--GEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~d~~~~~--g~~-~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
+.+-++|. .+ +.. ...+.- .....++.+||||++++.+.... ..+.++|.++
T Consensus 254 --------------~~V~VID~--~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s---~~VsVid~~~ 308 (595)
T 1fwx_A 254 --------------NGVKVVDG--RKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLS---PTVTVLDVTR 308 (595)
T ss_dssp --------------TTEEEEEC--SGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTS---SBEEEEEGGG
T ss_pred --------------CcEEEEeC--cccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCC---CeEEEEECcc
Confidence 24778885 22 222 223332 23456789999999988765433 2677888764
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00023 Score=76.21 Aligned_cols=219 Identities=7% Similarity=0.004 Sum_probs=130.6
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC----CceeecccCCC
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT----GKARPLFQSPD 239 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~----g~~~~lt~~~~ 239 (953)
.|+..++.. .....+ .+.......+.|+++++.|+++.. ....|+++++++ +....+.....
T Consensus 11 ~I~~i~~~~----~~~~~~--~~~~~~p~g~~~d~~~~~ly~~D~--------~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 11 EVRKMTLDR----SEYTSL--IPNLRNVVALDTEVASNRIYWSDL--------SQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp SEEEEETTS----CCCEEE--ECSCSSEEEEEEETTTTEEEEEET--------TTTEEEEEEC--------CEEEECSSC
T ss_pred eEEEEECCC----cceEeh--hcCCCceEEEEEEeCCCEEEEEEC--------CCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 677777732 222222 222235678999999988888642 356899999887 33333322111
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEE
Q 002209 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (953)
Q Consensus 240 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 319 (953)
.. ...+++.+.++.|+++.. ....|.++
T Consensus 77 ~~----p~glavd~~~~~ly~~d~------------------------------------------------~~~~I~~~ 104 (316)
T 1ijq_A 77 QA----PDGLAVDWIHSNIYWTDS------------------------------------------------VLGTVSVA 104 (316)
T ss_dssp SC----CCEEEEETTTTEEEEEET------------------------------------------------TTTEEEEE
T ss_pred CC----cCEEEEeecCCeEEEEEC------------------------------------------------CCCEEEEE
Confidence 11 346777777777776610 23467788
Q ss_pred EcCC-ceeEeCC-C-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccc
Q 002209 320 SLDG-TVKEIGP-P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNS 396 (953)
Q Consensus 320 ~~~g-~~~~l~~-~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~ 396 (953)
+++| ..+.+.. . .....+++.|++.+|+++.... ...|++++++|...+.+.....
T Consensus 105 ~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~-----------~~~I~~~~~dG~~~~~~~~~~~---------- 163 (316)
T 1ijq_A 105 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----------PAKIKKGGLNGVDIYSLVTENI---------- 163 (316)
T ss_dssp ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS-----------SCEEEEEETTSCCEEEEECSSC----------
T ss_pred eCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC-----------CCeEEEEcCCCCCeEEEEECCC----------
Confidence 8855 3333332 3 5667889999888888775221 1379999999877665543211
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc---cccCCeeeccCCceEEEE
Q 002209 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD---LRYGGISWCDDSLALVYE 473 (953)
Q Consensus 397 ~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~---~~~~~~~~SpDg~~l~~~ 473 (953)
..+..++|+|+++.|++. + ...+.|+++++ +|...+.+.... ....++++ |+..|+++
T Consensus 164 --~~P~gla~d~~~~~lY~~-D-----------~~~~~I~~~d~---dg~~~~~~~~~~~~~~~P~giav--~~~~ly~~ 224 (316)
T 1ijq_A 164 --QWPNGITLDLLSGRLYWV-D-----------SKLHSISSIDV---NGGNRKTILEDEKRLAHPFSLAV--FEDKVFWT 224 (316)
T ss_dssp --SCEEEEEEETTTTEEEEE-E-----------TTTTEEEEEET---TSCSCEEEEECTTTTSSEEEEEE--ETTEEEEE
T ss_pred --CCceEEEEeccCCEEEEE-E-----------CCCCeEEEEec---CCCceEEEeecCCccCCcEEEEE--ECCEEEEE
Confidence 234579999998766554 2 22458999996 666655554321 22334555 45677776
Q ss_pred EecccCceEEEEEcCCCC
Q 002209 474 SWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 474 ~~~~~~~~~l~~~d~~~~ 491 (953)
.+.. .+|++++..++
T Consensus 225 d~~~---~~V~~~~~~~g 239 (316)
T 1ijq_A 225 DIIN---EAIFSANRLTG 239 (316)
T ss_dssp ETTT---TEEEEEETTTC
T ss_pred ECCC---CeEEEEeCCCC
Confidence 5433 37888887654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00017 Score=78.43 Aligned_cols=180 Identities=11% Similarity=0.088 Sum_probs=117.5
Q ss_pred cceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhh
Q 002209 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (953)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (953)
...|+.+++++.+...+...... ...++|.+.+..|+++.
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~-----~~~l~~d~~~~~ly~~D----------------------------------- 91 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLEN-----AIALDFHHRRELVFWSD----------------------------------- 91 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSC-----EEEEEEETTTTEEEEEE-----------------------------------
T ss_pred ccceEEEeCCCCeeEEeecCCCc-----eEEEEEeccccEEEEEe-----------------------------------
Confidence 34689999988776655433221 45789998888888761
Q ss_pred hcCCcchhhhhhhhccceEEEEEc-CCceeEe-CCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc
Q 002209 298 LLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI-GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (953)
Q Consensus 298 ~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l-~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 374 (953)
.....|+++++ ++..+.+ ... .....+++.+.++.|+++... ...|++.+++
T Consensus 92 -------------~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~------------~~~I~~~~~d 146 (349)
T 3v64_C 92 -------------VTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG------------TSRIEVANLD 146 (349)
T ss_dssp -------------TTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEEEETT
T ss_pred -------------ccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCC------------CCeEEEEcCC
Confidence 02357889998 4444443 333 455678888888888877622 2378999998
Q ss_pred CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee-
Q 002209 375 GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK- 453 (953)
Q Consensus 375 g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~- 453 (953)
|+..+.+..... ..++.+++.|++.. +||++.. ....|++++. +|...+.+..
T Consensus 147 G~~~~~l~~~~l------------~~P~~iavdp~~g~-ly~td~~----------~~~~I~r~~~---dG~~~~~~~~~ 200 (349)
T 3v64_C 147 GAHRKVLLWQSL------------EKPRAIALHPMEGT-IYWTDWG----------NTPRIEASSM---DGSGRRIIADT 200 (349)
T ss_dssp SCSCEEEECTTC------------SCEEEEEEETTTTE-EEEEECS----------SSCEEEEEET---TSCSCEESCCS
T ss_pred CCceEEEEeCCC------------CCcceEEEecCcCe-EEEeccC----------CCCEEEEEeC---CCCCcEEEEEC
Confidence 876555443211 23457889997764 4553321 1357999985 6655555533
Q ss_pred cccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 454 LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 454 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
......+++|+|+++.|+++.... .+|+.++.++.
T Consensus 201 ~~~~PnGla~d~~~~~lY~aD~~~---~~I~~~~~dG~ 235 (349)
T 3v64_C 201 HLFWPNGLTIDYAGRRMYWVDAKH---HVIERANLDGS 235 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTT---TEEEEEETTSC
T ss_pred CCCCcceEEEeCCCCEEEEEECCC---CEEEEEeCCCC
Confidence 233356799999999999885433 38999998874
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.25 E-value=2e-06 Score=96.03 Aligned_cols=108 Identities=13% Similarity=-0.117 Sum_probs=73.0
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHH-HHcCcEEEEcCCCCCCCCCChhhhh--hhHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW-LARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~~ 746 (953)
.|+||++||.... ....|.......| +..+|.|+++|. .|+|.+.... ........++.+.
T Consensus 69 ~p~vvliHG~~~s-------------~~~~w~~~l~~~ll~~~~~~VI~vD~---~g~g~s~y~~~~~~~~~v~~~la~l 132 (449)
T 1hpl_A 69 RKTRFIIHGFIDK-------------GEESWLSTMCQNMFKVESVNCICVDW---KSGSRTAYSQASQNVRIVGAEVAYL 132 (449)
T ss_dssp SEEEEEECCCCCT-------------TCTTHHHHHHHHHHHHCCEEEEEEEC---HHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCC-------------CCccHHHHHHHHHHhcCCeEEEEEeC---CcccCCccHHHHHHHHHHHHHHHHH
Confidence 6899999995311 0111111123344 457899999554 5666553211 1233455677788
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
+++|.+...++.+++.|+||||||.+|+.++.++|++++.++...|+
T Consensus 133 l~~L~~~~g~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa 179 (449)
T 1hpl_A 133 VGVLQSSFDYSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPA 179 (449)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred HHHHHHhcCCCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCcc
Confidence 88886443345689999999999999999999999999999988765
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0035 Score=73.42 Aligned_cols=228 Identities=12% Similarity=0.018 Sum_probs=130.6
Q ss_pred ccceEEEEEc-CCcee--EeC-CC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCC
Q 002209 312 ATTQLVLVSL-DGTVK--EIG-PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL 386 (953)
Q Consensus 312 ~~~~l~~~~~-~g~~~--~l~-~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~ 386 (953)
....|..+++ .+... .+. .+ .....++|.+.+..|+++... ...|+.++++|+....+.....
T Consensus 324 ~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~------------~~~I~r~~~~g~~~~~v~~~~~ 391 (619)
T 3s94_A 324 RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDE------------VRAIRRSFIDGSGSQFVVTAQI 391 (619)
T ss_dssp ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCSCEEEECSSC
T ss_pred cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCC------------CCeEEEEEcCCCccEEEEECCC
Confidence 3456777777 33221 121 11 445667888877778777522 2378888888765544433211
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec-ccccCCeeecc
Q 002209 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCD 465 (953)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~-~~~~~~~~~Sp 465 (953)
..+..+++.+.++.| ||++ ...+.|.+.++ +|...+.+... ......+++.|
T Consensus 392 ------------~~p~GlAvD~~~~~l-Y~tD-----------~~~~~I~v~~~---~G~~~~~l~~~~l~~P~~iavdp 444 (619)
T 3s94_A 392 ------------AHPDGIAVDWVARNL-YWTD-----------TGTDRIEVTRL---NGTMRKILISEDLEEPRAIVLDP 444 (619)
T ss_dssp ------------SCCCEEEEETTTTEE-EEEE-----------TTTTEEEEEET---TSCSCEEEECTTCCSEEEEEEET
T ss_pred ------------CCcCceEEecccCcE-EEEe-----------CCCCcEEEEeC---CCCeEEEEEECCCCCeeeEEEEc
Confidence 223467777666654 5532 23567888885 66655555432 23456688999
Q ss_pred CCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCC
Q 002209 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGA 545 (953)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~ 545 (953)
....|+++.+... .+|+.+++++. ....+.........+ ++++++++.|++...
T Consensus 445 ~~G~ly~tD~g~~--~~I~r~~~dG~--~~~~l~~~~l~~P~G------lalD~~~~~LY~aD~---------------- 498 (619)
T 3s94_A 445 MVGYMYWTDWGEI--PKIERAALDGS--DRVVLVNTSLGWPNG------LALDYDEGKIYWGDA---------------- 498 (619)
T ss_dssp TTTEEEEEECSSS--CEEEEEETTSC--SCEEEECSSCSCEEE------EEEETTTTEEEEEET----------------
T ss_pred CCCcEEEecCCCC--CEEEEEccCCC--ccEEEEeCCCCCCee------eEEcccCCEEEEEEC----------------
Confidence 8788888876542 48999999874 334444332222122 677777777777642
Q ss_pred CCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEE
Q 002209 546 TPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQI 624 (953)
Q Consensus 546 ~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~L 624 (953)
....|..+++++...+.+...... ....+..++..++++-+ ....|++++..+|+.+.+
T Consensus 499 ----~~~~I~~~~~dG~~~~~~~~~~l~-------------~P~glav~~~~ly~tD~---~~~~I~~~~k~~g~~~~~ 557 (619)
T 3s94_A 499 ----KTDKIEVMNTDGTGRRVLVEDKIP-------------HIFGFTLLGDYVYWTDW---QRRSIERVHKRSAEREVI 557 (619)
T ss_dssp ----TTTEEEEEESSSCCCEEEEECCCC-------------SSCCEEEETTEEEEECT---TSSCEEEEESSSCCEEEE
T ss_pred ----CCCEEEEEecCCCceEEEeccCCC-------------CcEEEEEECCEEEEeec---CCCeEEEEEcCCCceEEE
Confidence 123588888877666555432211 11223334555554332 234677888777754443
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00021 Score=75.43 Aligned_cols=191 Identities=14% Similarity=0.113 Sum_probs=106.3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccC-CCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQS-PDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~-~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
.+....++|||+ |++... +...|++++.+ ++...+... ... ....+.+.+||+..+.. .
T Consensus 58 ~~~~i~~~~~g~-l~v~~~--------~~~~i~~~~~~-g~~~~~~~~~~~~----~~~~i~~~~~g~l~v~~-~----- 117 (299)
T 2z2n_A 58 KVMCLTISSDGE-VWFTEN--------AANKIGRITKK-GIIKEYTLPNPDS----APYGITEGPNGDIWFTE-M----- 117 (299)
T ss_dssp CEEEEEECTTSC-EEEEET--------TTTEEEEECTT-SCEEEEECSSTTC----CEEEEEECTTSCEEEEE-T-----
T ss_pred ceeeEEECCCCC-EEEeCC--------CCCeEEEECCC-CcEEEEeCCCcCC----CceeeEECCCCCEEEEe-c-----
Confidence 567788899987 444321 24579999987 444433211 111 14567788888654432 0
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCC--C-CcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP--P-AVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~--~-~~~~~~~~SpDG~~ 345 (953)
....|++++.+|+...+.. . .....++++|||+
T Consensus 118 -------------------------------------------~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~- 153 (299)
T 2z2n_A 118 -------------------------------------------NGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNA- 153 (299)
T ss_dssp -------------------------------------------TTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSC-
T ss_pred -------------------------------------------CCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCC-
Confidence 1245777777655444322 2 4567788999996
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
|.++... ...|++++. ++....+.... . ...+..+++++||+ +|+..
T Consensus 154 l~v~~~~------------~~~i~~~~~-~g~~~~~~~~~-~----------~~~~~~i~~~~~g~--l~v~~------- 200 (299)
T 2z2n_A 154 LWFTENQ------------NNAIGRITE-SGDITEFKIPT-P----------ASGPVGITKGNDDA--LWFVE------- 200 (299)
T ss_dssp EEEEETT------------TTEEEEECT-TCCEEEEECSS-T----------TCCEEEEEECTTSS--EEEEE-------
T ss_pred EEEEeCC------------CCEEEEEcC-CCcEEEeeCCC-C----------CCcceeEEECCCCC--EEEEc-------
Confidence 4444311 237888888 44444331110 0 12345688999986 34321
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEee--cccccCCeeeccCCceEEEEEecccCceEEEEEcCC
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~--~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
...+.|++++. + ++...+.. .......+.++++|+ |+++.... ..|+.++.+
T Consensus 201 ----~~~~~i~~~~~---~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~---~~i~~~d~~ 254 (299)
T 2z2n_A 201 ----IIGNKIGRITT---S-GEITEFKIPTPNARPHAITAGAGID-LWFTEWGA---NKIGRLTSN 254 (299)
T ss_dssp ----TTTTEEEEECT---T-CCEEEEECSSTTCCEEEEEECSTTC-EEEEETTT---TEEEEEETT
T ss_pred ----cCCceEEEECC---C-CcEEEEECCCCCCCceeEEECCCCC-EEEeccCC---ceEEEECCC
Confidence 12457888873 3 33333321 123445688999987 55543222 268888874
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00017 Score=75.48 Aligned_cols=79 Identities=15% Similarity=0.001 Sum_probs=47.5
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
.|+++|.++ | ....++.. ........+.++|||+.|+ .. ...|+.+|.++....++.......
T Consensus 16 ~v~~~d~~t-G--~~~w~~~~-~~~~~~~~~~~~pdG~ilv-s~----------~~~V~~~d~~G~~~W~~~~~~~~~-- 78 (276)
T 3no2_A 16 KIAIINKDT-K--EIVWEYPL-EKGWECNSVAATKAGEILF-SY----------SKGAKMITRDGRELWNIAAPAGCE-- 78 (276)
T ss_dssp EEEEEETTT-T--EEEEEEEC-CTTCCCCEEEECTTSCEEE-EC----------BSEEEEECTTSCEEEEEECCTTCE--
T ss_pred EEEEEECCC-C--eEEEEeCC-CccCCCcCeEECCCCCEEE-eC----------CCCEEEECCCCCEEEEEcCCCCcc--
Confidence 678888633 3 22233321 1112467788999998666 21 346899998554455554321111
Q ss_pred ccccceEEecCCeEEEEE
Q 002209 244 AIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~ 261 (953)
+..+.+++||+.|+..
T Consensus 79 --~~~~~~~~dG~~lv~~ 94 (276)
T 3no2_A 79 --MQTARILPDGNALVAW 94 (276)
T ss_dssp --EEEEEECTTSCEEEEE
T ss_pred --ccccEECCCCCEEEEe
Confidence 5577899999988865
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.20 E-value=2.5e-06 Score=91.64 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=63.7
Q ss_pred hHHHHHHHcCcE---EEEcCCCCCCCCCChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHH
Q 002209 703 TSVLLWLARGFA---ILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLL 777 (953)
Q Consensus 703 ~~~~~la~~G~~---V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a 777 (953)
.....|+++||. |+.+++ .|+|.+.... ......++++.+.++.+.+.. ..+++.|+||||||.++..++
T Consensus 72 ~l~~~L~~~Gy~~~~V~~~D~---~g~G~S~~~~~~~~~~~~~~~l~~~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a 146 (342)
T 2x5x_A 72 SVYAELKARGYNDCEIFGVTY---LSSSEQGSAQYNYHSSTKYAIIKTFIDKVKAYT--GKSQVDIVAHSMGVSMSLATL 146 (342)
T ss_dssp CHHHHHHHTTCCTTSEEEECC---SCHHHHTCGGGCCBCHHHHHHHHHHHHHHHHHH--TCSCEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEEEeC---CCCCccCCccccCCHHHHHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHH
Confidence 346678889998 998554 5555542221 112445667777777776542 236899999999999999999
Q ss_pred HhC--CCcccEEEEcccCCC
Q 002209 778 AHA--PHLFCCGIARSGAYN 795 (953)
Q Consensus 778 ~~~--p~~~~a~v~~~~~~d 795 (953)
.++ |++++++|++++...
T Consensus 147 ~~~~~p~~V~~lVlla~p~~ 166 (342)
T 2x5x_A 147 QYYNNWTSVRKFINLAGGIR 166 (342)
T ss_dssp HHHTCGGGEEEEEEESCCTT
T ss_pred HHcCchhhhcEEEEECCCcc
Confidence 988 889999999987643
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00038 Score=77.14 Aligned_cols=225 Identities=11% Similarity=0.070 Sum_probs=132.9
Q ss_pred cceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc----eEEEeccCCC
Q 002209 313 TTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI----FVRELCDLPL 386 (953)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~----~~~~l~~~~~ 386 (953)
...|.++++ .+....+... .....++|+++++.|+++... ...|+.+++++. ....+.....
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~------------~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------------QRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEEC------CCCEEEECSSC
T ss_pred cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecC------------CCeEEEEEcccCCCCCcceEEEeCCC
Confidence 357888998 4445555444 677789999988888887622 237888888763 2222222110
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee-cccccCCeeecc
Q 002209 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCD 465 (953)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~-~~~~~~~~~~Sp 465 (953)
..+..+++.+.+..| ||++. ..+.|.++++ +|...+.+.. .......+++.|
T Consensus 159 ------------~~p~glavD~~~~~l-Y~~d~-----------~~~~I~~~~~---~g~~~~~l~~~~~~~P~~iavdp 211 (400)
T 3p5b_L 159 ------------QAPDGLAVDWIHSNI-YWTDS-----------VLGTVSVADT---KGVKRKTLFRENGSKPRAIVVDP 211 (400)
T ss_dssp ------------SCEEEEEEETTTTEE-EEEET-----------TTTEEEEECT---TTCSEEEEEECSSCCEEEEEEET
T ss_pred ------------CCcccEEEEecCCce-EEEEC-----------CCCeEEEEeC---CCCceEEEEeCCCCCcceEEEec
Confidence 223457777655544 55332 2457888885 6665555544 233456789999
Q ss_pred CCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCC
Q 002209 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGA 545 (953)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~ 545 (953)
.+..|+++.+... .+|+++++++. ..+.+.........+ ++++++++.|++...
T Consensus 212 ~~g~ly~td~~~~--~~I~~~~~dG~--~~~~~~~~~l~~P~g------lavd~~~~~lY~aD~---------------- 265 (400)
T 3p5b_L 212 VHGFMYWTDWGTP--AKIKKGGLNGV--DIYSLVTENIQWPNG------ITLDLLSGRLYWVDS---------------- 265 (400)
T ss_dssp TTTEEEEEECSSS--CCEEEEETTSC--SCEEEECSSCSCEEE------EEEETTTTEEEEEET----------------
T ss_pred ccCeEEEEeCCCC--CEEEEEeCCCC--ccEEEEECCCCceEE------EEEEeCCCEEEEEEC----------------
Confidence 9889998876432 37999999874 334443322222122 788988888887742
Q ss_pred CCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCC
Q 002209 546 TPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (953)
Q Consensus 546 ~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~ 620 (953)
....|+++|++++..+.+....... .....++.++..++++-+. ...|++++..+|+
T Consensus 266 ----~~~~I~~~d~dG~~~~~~~~~~~~l-----------~~P~gl~v~~~~lywtd~~---~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 266 ----KLHSISSIDVNGGNRKTILEDEKRL-----------AHPFSLAVFEDKVFWTDII---NEAIFSANRLTGS 322 (400)
T ss_dssp ----TTTEEEEEETTSCCCEEEEECSSTT-----------SSEEEEEEETTEEEEEESS---SCSEEEEESSSCC
T ss_pred ----CCCEEEEEeCCCCccEEEEeCCCCC-----------CCCEEEEEeCCEEEEecCC---CCeEEEEEcCCCC
Confidence 1235999999877766665432210 0111233455666665532 2347777755554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00048 Score=76.37 Aligned_cols=180 Identities=14% Similarity=0.000 Sum_probs=116.5
Q ss_pred cceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhh
Q 002209 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (953)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (953)
...|++++++++....+...... ...++|.+.+..||++..
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~~~-----~~~l~~d~~~~~lywsD~---------------------------------- 131 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSDL---------------------------------- 131 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSCSC-----EEEEEEETTTTEEEEEET----------------------------------
T ss_pred cceeEEEccCCcceeEeccccCc-----ceEEeeeeccCceEEEec----------------------------------
Confidence 46899999998776655433221 457899988888887610
Q ss_pred hcCCcchhhhhhhhccceEEEEEcCC-----ceeEe-CCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEE
Q 002209 298 LLKDEYDEDLFDYYATTQLVLVSLDG-----TVKEI-GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (953)
Q Consensus 298 ~~~~~~d~~~~~~~~~~~l~~~~~~g-----~~~~l-~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~ 370 (953)
....|++++++| ....+ ... .....+++.+.++.|+++... ...|++
T Consensus 132 --------------~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~------------~~~I~~ 185 (400)
T 3p5b_L 132 --------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSV 185 (400)
T ss_dssp --------------TTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETT------------TTEEEE
T ss_pred --------------CCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECC------------CCeEEE
Confidence 224677888743 22333 323 556677888877788777522 247889
Q ss_pred EeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE
Q 002209 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (953)
Q Consensus 371 ~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~ 450 (953)
.+++|+..+.+..... ..++.++..|.+.. +||++. .....|+++++ +|...+.
T Consensus 186 ~~~~g~~~~~l~~~~~------------~~P~~iavdp~~g~-ly~td~----------~~~~~I~~~~~---dG~~~~~ 239 (400)
T 3p5b_L 186 ADTKGVKRKTLFRENG------------SKPRAIVVDPVHGF-MYWTDW----------GTPAKIKKGGL---NGVDIYS 239 (400)
T ss_dssp ECTTTCSEEEEEECSS------------CCEEEEEEETTTTE-EEEEEC----------SSSCCEEEEET---TSCSCEE
T ss_pred EeCCCCceEEEEeCCC------------CCcceEEEecccCe-EEEEeC----------CCCCEEEEEeC---CCCccEE
Confidence 9999877665544221 23467889887654 455332 12357889885 6666655
Q ss_pred Eeecc-cccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 451 LHKLD-LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 451 l~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
+.... ....++++++++++|+++.... .+|+.++.++.
T Consensus 240 ~~~~~l~~P~glavd~~~~~lY~aD~~~---~~I~~~d~dG~ 278 (400)
T 3p5b_L 240 LVTENIQWPNGITLDLLSGRLYWVDSKL---HSISSIDVNGG 278 (400)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTT---TEEEEEETTSC
T ss_pred EEECCCCceEEEEEEeCCCEEEEEECCC---CEEEEEeCCCC
Confidence 54332 4456799999999999885432 38999999874
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.18 E-value=3.4e-06 Score=94.24 Aligned_cols=107 Identities=11% Similarity=-0.075 Sum_probs=71.2
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEEcCCCCCCCCCChhhh--hhhHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~~ 746 (953)
.|+||++||.... ....|.......|++ .+|.|+++|. .|+|.+... .........|+.+.
T Consensus 70 ~p~vvliHG~~~s-------------~~~~w~~~l~~~ll~~~~~~VI~vD~---~g~g~s~y~~~~~~~~~~a~~l~~l 133 (450)
T 1rp1_A 70 KKTRFIIHGFIDK-------------GEENWLLDMCKNMFKVEEVNCICVDW---KKGSQTSYTQAANNVRVVGAQVAQM 133 (450)
T ss_dssp SEEEEEECCCCCT-------------TCTTHHHHHHHHHTTTCCEEEEEEEC---HHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEccCCCC-------------CCcchHHHHHHHHHhcCCeEEEEEeC---ccccCCcchHHHHHHHHHHHHHHHH
Confidence 6899999995311 110111112334454 4899999555 455443211 11234456778888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
+++|.+...++.+++.|+||||||.+|+.++.++|+ ++.++...|+
T Consensus 134 l~~L~~~~g~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa 179 (450)
T 1rp1_A 134 LSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPV 179 (450)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCC
T ss_pred HHHHHHhcCCChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCcc
Confidence 888864433456799999999999999999999998 9999887765
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=2.5e-06 Score=94.68 Aligned_cols=166 Identities=14% Similarity=0.144 Sum_probs=102.5
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCc---EEEEcCCCCCCCCCChh---------------h
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF---AILGGPTTPIIGEGDEE---------------A 731 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~---~V~~~~~~~~~G~G~~~---------------~ 731 (953)
.|.||++||..... ..| ......|+++|| .|+.+++ .|+|.+. +
T Consensus 22 ~ppVVLlHG~g~s~-----------~~w----~~la~~La~~Gy~~~~Via~Dl---pG~G~S~~~~~Dv~~~G~~~~~G 83 (484)
T 2zyr_A 22 FRPVVFVHGLAGSA-----------GQF----ESQGMRFAANGYPAEYVKTFEY---DTISWALVVETDMLFSGLGSEFG 83 (484)
T ss_dssp CCCEEEECCTTCCG-----------GGG----HHHHHHHHHTTCCGGGEEEECC---CHHHHHHHTTTSTTTTTGGGHHH
T ss_pred CCEEEEECCCCCCH-----------HHH----HHHHHHHHHcCCCcceEEEEEC---CCCCccccccccccccccccccc
Confidence 56789999953111 111 245667888999 6888444 5666430 0
Q ss_pred -------------------hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC---CcccEEEE
Q 002209 732 -------------------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIA 789 (953)
Q Consensus 732 -------------------~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~ 789 (953)
........+.++.+.++.+.+.. ..+++.|+||||||.+++.++.++| ++++++|+
T Consensus 84 ~n~~p~id~~~l~~v~~~~~~~~~~~~~~dla~~L~~ll~~l--g~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVl 161 (484)
T 2zyr_A 84 LNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAES--GADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLIL 161 (484)
T ss_dssp HHHGGGSCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEE
T ss_pred cccccccccccccccccccccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEE
Confidence 00123345667777777776653 2368999999999999999999987 48999999
Q ss_pred cccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCC--CCCchHHHHHHHHHHHhCCCcEEE
Q 002209 790 RSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNN--SGTLTMQSDRFFNALKGHGALCRL 867 (953)
Q Consensus 790 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~--v~~~~~~~~~~~~~l~~~g~~~~~ 867 (953)
+++..+.. + | ...++|.+.|..|.. |.. +.. .++. ..+.
T Consensus 162 Iapp~~~d----------------------~-p------~g~~~L~ilG~~d~~p~V~~-pss------~L~~---ga~~ 202 (484)
T 2zyr_A 162 LDGVWGVD----------------------A-P------EGIPTLAVFGNPKALPALGL-PEE------KVVY---NATN 202 (484)
T ss_dssp ESCCCSEE----------------------C-C------TTSCEEEEEECGGGSCCSSC-CSS------CCEE---TSEE
T ss_pred ECCccccc----------------------c-C------cCCHHHHHhCCCCcCCcccC-hhH------hcCC---CceE
Confidence 99865410 0 0 235677777766531 110 111 1210 1256
Q ss_pred EEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 868 VILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 868 ~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
+++++++|... ..+ ..+++.+.+||..
T Consensus 203 v~i~~a~H~~l-l~d-p~v~~~Vl~fL~~ 229 (484)
T 2zyr_A 203 VYFNNMTHVQL-CTS-PETFAVMFEFING 229 (484)
T ss_dssp EEETTCCHHHH-HHC-HHHHHHHHHHHHS
T ss_pred EEECCCCcccc-ccC-HHHHHHHHHHhcc
Confidence 67799999753 222 3556678888874
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0003 Score=75.24 Aligned_cols=224 Identities=8% Similarity=-0.009 Sum_probs=130.9
Q ss_pred cceEEEEEcCCc---eeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCc
Q 002209 313 TTQLVLVSLDGT---VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLA 387 (953)
Q Consensus 313 ~~~l~~~~~~g~---~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~ 387 (953)
...|.++++++. ...+... .....++|.+.++.|+++... .+.|+.++++++.. ..+....
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~------------~~~I~r~~~~g~~~~~~~~~~~-- 77 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVS------------EEAIKRTEFNKTESVQNVVVSG-- 77 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETT------------TTEEEEEETTSSSCCCEEEEEC--
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECC------------CCcEEEEEccCCCceEEEEcCC--
Confidence 357888998432 2222222 445678899988888777522 24788888886632 1111111
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe-ecccccCCeeeccC
Q 002209 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDD 466 (953)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~-~~~~~~~~~~~SpD 466 (953)
...+..+++.+.+..| ||++. ..+.|.++++ +|...+.+. ........+++.|+
T Consensus 78 ----------l~~p~glavd~~~g~l-y~~d~-----------~~~~I~~~~~---dG~~~~~l~~~~~~~P~giavdp~ 132 (318)
T 3sov_A 78 ----------LLSPDGLACDWLGEKL-YWTDS-----------ETNRIEVSNL---DGSLRKVLFWQELDQPRAIALDPS 132 (318)
T ss_dssp ----------CSCCCEEEEETTTTEE-EEEET-----------TTTEEEEEET---TSCSCEEEECSSCSSEEEEEEEGG
T ss_pred ----------CCCccEEEEEcCCCeE-EEEEC-----------CCCEEEEEEC---CCCcEEEEEeCCCCCccEEEEeCC
Confidence 0123467787766554 45322 2457888885 665555554 33334567889998
Q ss_pred CceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCC
Q 002209 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGAT 546 (953)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (953)
+..|+++.+... .+|+++++++. ..+.+.........+ ++++++++.|++...
T Consensus 133 ~g~ly~td~~~~--~~I~r~~~dG~--~~~~~~~~~l~~Png------lavd~~~~~lY~aD~----------------- 185 (318)
T 3sov_A 133 SGFMYWTDWGEV--PKIERAGMDGS--SRFIIINSEIYWPNG------LTLDYEEQKLYWADA----------------- 185 (318)
T ss_dssp GTEEEEEECSSS--CEEEEEETTSC--SCEEEECSSCSCEEE------EEEETTTTEEEEEET-----------------
T ss_pred CCEEEEEecCCC--CEEEEEEcCCC--CeEEEEECCCCCccE------EEEeccCCEEEEEEC-----------------
Confidence 888888865432 48999999874 334443322211112 789999988888752
Q ss_pred CCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCe
Q 002209 547 PEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (953)
Q Consensus 547 ~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~ 621 (953)
....|+++|+++...+.+...... ....+..++..++++-. ....|+.++..+|+.
T Consensus 186 ---~~~~I~~~d~dG~~~~~~~~~~~~-------------~P~glav~~~~lywtd~---~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 186 ---KLNFIHKSNLDGTNRQAVVKGSLP-------------HPFALTLFEDILYWTDW---STHSILACNKYTGEG 241 (318)
T ss_dssp ---TTTEEEEEETTSCSCEEEECSCCS-------------CEEEEEEETTEEEEEET---TTTEEEEEETTTCCS
T ss_pred ---CCCEEEEEcCCCCceEEEecCCCC-------------CceEEEEeCCEEEEEec---CCCeEEEEECCCCCc
Confidence 123599999987666655532211 01122334556666533 234677788766643
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0013 Score=69.11 Aligned_cols=191 Identities=16% Similarity=0.119 Sum_probs=106.8
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..+.++|||+ |++... ....|++++.+ ++...+...... ..+..+++.+||+..+.. .
T Consensus 16 ~~~~i~~d~~g~-l~v~~~--------~~~~v~~~d~~-~~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~-~------ 75 (299)
T 2z2n_A 16 GPYGITVSDKGK-VWITQH--------KANMISCINLD-GKITEYPLPTPD---AKVMCLTISSDGEVWFTE-N------ 75 (299)
T ss_dssp CEEEEEECTTSC-EEEEET--------TTTEEEEECTT-CCEEEEECSSTT---CCEEEEEECTTSCEEEEE-T------
T ss_pred CccceEECCCCC-EEEEec--------CCCcEEEEcCC-CCeEEecCCccc---CceeeEEECCCCCEEEeC-C------
Confidence 567788899997 444321 24579999988 665544321110 115578888998755432 0
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCC--C-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP--P-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~--~-~~~~~~~~SpDG~~l 346 (953)
....|++++.+|+.+.+.. . .....++++|||+.
T Consensus 76 ------------------------------------------~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l- 112 (299)
T 2z2n_A 76 ------------------------------------------AANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDI- 112 (299)
T ss_dssp ------------------------------------------TTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCE-
T ss_pred ------------------------------------------CCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCE-
Confidence 1245777777555444332 2 45667889999964
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (953)
.++... ...|++++.++. ...+.... . ...+..+++++||+ +++. .
T Consensus 113 ~v~~~~------------~~~i~~~d~~g~-~~~~~~~~-~----------~~~~~~i~~~~~g~-l~v~-~-------- 158 (299)
T 2z2n_A 113 WFTEMN------------GNRIGRITDDGK-IREYELPN-K----------GSYPSFITLGSDNA-LWFT-E-------- 158 (299)
T ss_dssp EEEETT------------TTEEEEECTTCC-EEEEECSS-T----------TCCEEEEEECTTSC-EEEE-E--------
T ss_pred EEEecC------------CceEEEECCCCC-EEEecCCC-C----------CCCCceEEEcCCCC-EEEE-e--------
Confidence 343311 237888888443 33322110 0 02345788999984 3332 1
Q ss_pred cccccCCeEEEEecCCCCCCCceEEe--ecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 427 VEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 427 ~~~~~~~~l~~~d~~~~~g~~~~~l~--~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
...+.+++++. + ++...+. ........+.++++|+ |+++.... ..|++++.
T Consensus 159 ---~~~~~i~~~~~---~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~---~~i~~~~~ 211 (299)
T 2z2n_A 159 ---NQNNAIGRITE---S-GDITEFKIPTPASGPVGITKGNDDA-LWFVEIIG---NKIGRITT 211 (299)
T ss_dssp ---TTTTEEEEECT---T-CCEEEEECSSTTCCEEEEEECTTSS-EEEEETTT---TEEEEECT
T ss_pred ---CCCCEEEEEcC---C-CcEEEeeCCCCCCcceeEEECCCCC-EEEEccCC---ceEEEECC
Confidence 12357888873 3 3443331 1222345678899987 44443222 27899998
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00051 Score=73.43 Aligned_cols=143 Identities=11% Similarity=0.042 Sum_probs=89.7
Q ss_pred ceEEEEEcCCc---eeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCccc
Q 002209 314 TQLVLVSLDGT---VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAED 389 (953)
Q Consensus 314 ~~l~~~~~~g~---~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~ 389 (953)
..|++++++|. ...+... .....+++.+.+..|+++... ...|++++++|+..+.+.....
T Consensus 57 ~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~------------~~~I~~~~~dG~~~~~l~~~~~--- 121 (318)
T 3sov_A 57 EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSE------------TNRIEVSNLDGSLRKVLFWQEL--- 121 (318)
T ss_dssp TEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETT------------TTEEEEEETTSCSCEEEECSSC---
T ss_pred CcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECC------------CCEEEEEECCCCcEEEEEeCCC---
Confidence 56888888332 2223222 455677888878888777522 2478899998876555543211
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec-ccccCCeeeccCCc
Q 002209 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSL 468 (953)
Q Consensus 390 ~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~-~~~~~~~~~SpDg~ 468 (953)
..++.++..|++.. +||++. .....|++++. +|...+.+... -....+++|+++++
T Consensus 122 ---------~~P~giavdp~~g~-ly~td~----------~~~~~I~r~~~---dG~~~~~~~~~~l~~Pnglavd~~~~ 178 (318)
T 3sov_A 122 ---------DQPRAIALDPSSGF-MYWTDW----------GEVPKIERAGM---DGSSRFIIINSEIYWPNGLTLDYEEQ 178 (318)
T ss_dssp ---------SSEEEEEEEGGGTE-EEEEEC----------SSSCEEEEEET---TSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred ---------CCccEEEEeCCCCE-EEEEec----------CCCCEEEEEEc---CCCCeEEEEECCCCCccEEEEeccCC
Confidence 23457888887654 455332 12457999985 66555555332 23446799999999
Q ss_pred eEEEEEecccCceEEEEEcCCCCCCCcEEee
Q 002209 469 ALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (953)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 499 (953)
.|+++.... .+|+.++.++. ..+.+.
T Consensus 179 ~lY~aD~~~---~~I~~~d~dG~--~~~~~~ 204 (318)
T 3sov_A 179 KLYWADAKL---NFIHKSNLDGT--NRQAVV 204 (318)
T ss_dssp EEEEEETTT---TEEEEEETTSC--SCEEEE
T ss_pred EEEEEECCC---CEEEEEcCCCC--ceEEEe
Confidence 999885432 38999999874 334443
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.2e-05 Score=73.65 Aligned_cols=64 Identities=17% Similarity=0.068 Sum_probs=45.4
Q ss_pred HcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
+++|.|+.+ +..|+|.+...........+|+.+.++.+ +.+++.++||||||.+++.++.++|.
T Consensus 40 ~~~~~v~~~---d~~G~G~s~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~ 103 (131)
T 2dst_A 40 PEGYAFYLL---DLPGYGRTEGPRMAPEELAHFVAGFAVMM------NLGAPWVLLRGLGLALGPHLEALGLR 103 (131)
T ss_dssp CTTSEEEEE---CCTTSTTCCCCCCCHHHHHHHHHHHHHHT------TCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred hCCcEEEEE---CCCCCCCCCCCCCCHHHHHHHHHHHHHHc------CCCccEEEEEChHHHHHHHHHhcCCc
Confidence 345999994 44677776443322455556655555543 34589999999999999999999975
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00011 Score=87.60 Aligned_cols=227 Identities=10% Similarity=0.027 Sum_probs=131.8
Q ss_pred cceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC----ceEEEeccCCC
Q 002209 313 TTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG----IFVRELCDLPL 386 (953)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g----~~~~~l~~~~~ 386 (953)
...|+++++ +++...+... .....++|++++..|+++... ...|+++++++ .....+....
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~------------~~~I~~~~~~g~~~~~~~~~~i~~~- 451 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------------QRMICSTQLDRAHGVSSYDTVISRD- 451 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTT------------TTSBEEEESCCCCC-CCCCCBCCSC-
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecC------------CCeEEEEecCCCCCCcceEEEEeCC-
Confidence 356888888 5555555444 667789999988888776522 24788888876 2211111100
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec-ccccCCeeecc
Q 002209 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCD 465 (953)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~-~~~~~~~~~Sp 465 (953)
...+..+++.+.+..|++. + ...+.|+++++ ++...+.+... ......+++.|
T Consensus 452 -----------~~~P~glavD~~~g~LY~t-D-----------~~~~~I~v~d~---dg~~~~~l~~~~~~~P~giavDp 505 (699)
T 1n7d_A 452 -----------IQAPDGLAVDWIHSNIYWT-D-----------SVLGTVSVADT---KGVKRKTLFREQGSKPRAIVVDP 505 (699)
T ss_dssp -----------C--CCCEECCCSSSBCEEC-C-----------TTTSCEEEEBS---SSCCEEEECCCSSCCCCCEECCS
T ss_pred -----------CCCcceEEEEeeCCcEEEE-e-----------ccCCeEEEEec---CCCceEEEEeCCCCCcceEEEcc
Confidence 0123467777666655443 1 22457888885 66555555332 34456789999
Q ss_pred CCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCC
Q 002209 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGA 545 (953)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~ 545 (953)
++++|+++.+... .+|+++++++. ..+.+.........+ ++|+|++++|++...
T Consensus 506 ~~g~ly~td~~~~--~~I~~~~~dG~--~~~~l~~~~l~~PnG------lavd~~~~~LY~aD~---------------- 559 (699)
T 1n7d_A 506 VHGFMYWTDWGTP--AKIKKGGLNGV--DIYSLVTENIQWPNG------ITLDLLSGRLYWVDS---------------- 559 (699)
T ss_dssp SSSCCEECCCSSS--CCEEBCCSSSC--CCCEESCSSCSSCCC------EEECTTTCCEEEEET----------------
T ss_pred CCCcEEEcccCCC--CeEEEEeCCCC--CeeEEEeCCCCCccE------EEEeccCCEEEEEec----------------
Confidence 9888888764332 37999988874 223332222111111 889999988888752
Q ss_pred CCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002209 546 TPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (953)
Q Consensus 546 ~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~ 622 (953)
....|+++|+++...+.+...... ......++.++..++++-+. ...|++++..+|+..
T Consensus 560 ----~~~~I~~~d~dG~~~~~~~~~~~~-----------~~~P~glavd~~~lywtd~~---~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 560 ----KLHSISSIDVNGGNRKTILEDEKR-----------LAHPFSLAVFEDKVFWTDII---NEAIFSANRLTGSDV 618 (699)
T ss_dssp ----TTTEEEEECSSSSCCEEECCCSSS-----------CSSCCCCEEETTEEEEECST---TTCEEEEETTTEEEE
T ss_pred ----CCCeEEEEccCCCceEEEEecCCc-----------CCCceEeEEECCEEEEEeCC---CCeEEEEEccCCCce
Confidence 123588999887655555432211 01122345566666655432 346888887666543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0013 Score=78.97 Aligned_cols=225 Identities=11% Similarity=0.060 Sum_probs=132.1
Q ss_pred cceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc----eEEEeccCCC
Q 002209 313 TTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI----FVRELCDLPL 386 (953)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~----~~~~l~~~~~ 386 (953)
...|.++++ .+....+... .....++|++.+..|+++... ...|+.+++++. ....+....
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~------------~~~I~~~~l~g~~~~~~~~~vi~~~- 469 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------------QRMICSTQLDRAHGVSSYDTVISRD- 469 (791)
T ss_dssp BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT------------TTEEEEEEC--------CEEEECSS-
T ss_pred ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeecc------------ceeEEEEeccCCCCCcceeEEEecC-
Confidence 346778888 4455555444 666788899888888777522 237888888863 222222211
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee-cccccCCeeecc
Q 002209 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCD 465 (953)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~-~~~~~~~~~~Sp 465 (953)
...+..+++.+.++.| ||++ ...+.|+++++ +|...+.+.. .......+++.|
T Consensus 470 -----------l~~P~GLAvD~~~~~L-Y~tD-----------~~~~~I~v~~l---dG~~~~~l~~~~l~~P~gIaVDp 523 (791)
T 3m0c_C 470 -----------IQAPDGLAVDWIHSNI-YWTD-----------SVLGTVSVADT---KGVKRKTLFRENGSKPRAIVVDP 523 (791)
T ss_dssp -----------CSCCCEEEEETTTTEE-EEEE-----------TTTTEEEEEET---TSSSEEEEEECTTCCEEEEEEET
T ss_pred -----------CCCcceeeeeecCCcE-EEEe-----------cCCCeEEEEeC---CCCeEEEEEeCCCCCcceEEEec
Confidence 1234568888877655 5533 23458899986 6666555543 333456789999
Q ss_pred CCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCC
Q 002209 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGA 545 (953)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~ 545 (953)
.+..|+++.+... .+|+++++++. ..+.+.........+ +++.+++..|++...
T Consensus 524 ~~g~LYwtD~g~~--~~I~~~~~dG~--~~~~lv~~~l~~P~G------LavD~~~~~LYwaD~---------------- 577 (791)
T 3m0c_C 524 VHGFMYWTDWGTP--AKIKKGGLNGV--DIYSLVTENIQWPNG------ITLDLLSGRLYWVDS---------------- 577 (791)
T ss_dssp TTTEEEEEECSSS--CEEEEEETTSC--CEEEEECSSCSCEEE------EEEETTTTEEEEEET----------------
T ss_pred CCCCEEEecCCCC--CeEEEEecCCC--ceEEEEeCCCCCceE------EEEecCCCeEEEEeC----------------
Confidence 9889999876542 38999999874 334444322222122 677777777777642
Q ss_pred CCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCC
Q 002209 546 TPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (953)
Q Consensus 546 ~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~ 620 (953)
....|+++++++...+.+...... ......++.++++|+++-+. ...|++++..+|+
T Consensus 578 ----~~~~I~~~d~dG~~~~~v~~~~~~-----------l~~P~glav~~~~lYwtD~~---~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 578 ----KLHSISSIDVNGGNRKTILEDEKR-----------LAHPFSLAVFEDKVFWTDII---NEAIFSANRLTGS 634 (791)
T ss_dssp ----TTTEEEEEETTSCSCEEEEECTTT-----------TSSEEEEEEETTEEEEEETT---TTEEEEEETTTCC
T ss_pred ----CCCcEEEEecCCCceEEEecCCCc-----------cCCCCEEEEeCCEEEEEECC---CCEEEEEeCCCCc
Confidence 123589999988777766544321 00112234445555554432 3457777755553
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0012 Score=79.34 Aligned_cols=180 Identities=14% Similarity=-0.006 Sum_probs=116.0
Q ss_pred cceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhh
Q 002209 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (953)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (953)
...|+.+++++++...+...... ...++|.+.+..||++..
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~~~~~-----~~gl~~d~~~~~lY~sD~---------------------------------- 443 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSDL---------------------------------- 443 (791)
T ss_dssp BSSEEEECTTSCCCEEEECSCSS-----EEEEEEETTTTEEEEEET----------------------------------
T ss_pred ccceeEeeccCCcceeeecCCCc-----eEEEeecccCCeeEEeec----------------------------------
Confidence 45688888887766555443221 457888887777777610
Q ss_pred hcCCcchhhhhhhhccceEEEEEcCC-----ceeEeCC-C-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEE
Q 002209 298 LLKDEYDEDLFDYYATTQLVLVSLDG-----TVKEIGP-P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (953)
Q Consensus 298 ~~~~~~d~~~~~~~~~~~l~~~~~~g-----~~~~l~~-~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~ 370 (953)
....|++++++| ....+.. . .....+++.+.|+.|+++... ...|++
T Consensus 444 --------------~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~------------~~~I~v 497 (791)
T 3m0c_C 444 --------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSV 497 (791)
T ss_dssp --------------TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEE
T ss_pred --------------cceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecC------------CCeEEE
Confidence 224677888743 2233332 3 566778888889888877522 348999
Q ss_pred EeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE
Q 002209 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (953)
Q Consensus 371 ~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~ 450 (953)
.+++|+..+.|..... ..++.+++.|.+.. +||++. .....|+++++ +|...+.
T Consensus 498 ~~ldG~~~~~l~~~~l------------~~P~gIaVDp~~g~-LYwtD~----------g~~~~I~~~~~---dG~~~~~ 551 (791)
T 3m0c_C 498 ADTKGVKRKTLFRENG------------SKPRAIVVDPVHGF-MYWTDW----------GTPAKIKKGGL---NGVDIYS 551 (791)
T ss_dssp EETTSSSEEEEEECTT------------CCEEEEEEETTTTE-EEEEEC----------SSSCEEEEEET---TSCCEEE
T ss_pred EeCCCCeEEEEEeCCC------------CCcceEEEecCCCC-EEEecC----------CCCCeEEEEec---CCCceEE
Confidence 9999887766654221 23467889887654 556432 12357888886 7666655
Q ss_pred Eeecc-cccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 451 LHKLD-LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 451 l~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
+.... ....++++.+++++|+++.... .+|+++++++.
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~~~---~~I~~~d~dG~ 590 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDSKL---HSISSIDVNGG 590 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTT---TEEEEEETTSC
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeCCC---CcEEEEecCCC
Confidence 54433 3456789999999998885332 38999999884
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0025 Score=67.07 Aligned_cols=193 Identities=13% Similarity=0.067 Sum_probs=107.2
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....+++||+ |++.. .+...|++++.+ |+...+...... .....+++.++|+..+..
T Consensus 63 ~~~~i~~~~~g~-l~v~~--------~~~~~v~~~d~~-g~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~-------- 121 (300)
T 2qc5_A 63 KVMCLIVSSLGD-IWFTE--------NGANKIGKLSKK-GGFTEYPLPQPD---SGPYGITEGLNGDIWFTQ-------- 121 (300)
T ss_dssp CEEEEEECTTSC-EEEEE--------TTTTEEEEECTT-SCEEEEECSSTT---CCEEEEEECSTTCEEEEE--------
T ss_pred cceeEEECCCCC-EEEEe--------cCCCeEEEECCC-CCeEEecCCCCC---CCCccceECCCCCEEEEc--------
Confidence 466778889986 44432 124579999988 555443221111 114567788888754432
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEe--CCC-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEI--GPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l--~~~-~~~~~~~~SpDG~~l 346 (953)
.....|++++.+|+...+ ... .....+++++||+ |
T Consensus 122 -----------------------------------------~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~-l 159 (300)
T 2qc5_A 122 -----------------------------------------LNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA-L 159 (300)
T ss_dssp -----------------------------------------TTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSS-E
T ss_pred -----------------------------------------cCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCC-E
Confidence 022457777776654433 212 4567788999998 5
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (953)
.++... ...|++++.++.. ..+.. +.. ...+..+.+++||+ + |+..
T Consensus 160 ~v~~~~------------~~~i~~~~~~g~~-~~~~~-~~~----------~~~~~~i~~d~~g~-l-~v~~-------- 205 (300)
T 2qc5_A 160 WFTENQ------------NNSIGRITNTGKL-EEYPL-PTN----------AAAPVGITSGNDGA-L-WFVE-------- 205 (300)
T ss_dssp EEEETT------------TTEEEEECTTCCE-EEEEC-SST----------TCCEEEEEECTTSS-E-EEEE--------
T ss_pred EEEecC------------CCeEEEECCCCcE-EEeeC-CCC----------CCCcceEEECCCCC-E-EEEc--------
Confidence 444311 2368888885433 33221 100 02345688889884 3 3321
Q ss_pred cccccCCeEEEEecCCCCCCCceEEee--cccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 427 VEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 427 ~~~~~~~~l~~~d~~~~~g~~~~~l~~--~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
...+.|++++. + ++...+.. .......+.++++|+ |+++.... ..|+.++.++
T Consensus 206 ---~~~~~i~~~~~---~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~---~~i~~~~~~g 260 (300)
T 2qc5_A 206 ---IMGNKIGRITT---T-GEISEYDIPTPNARPHAITAGKNSE-IWFTEWGA---NQIGRITNDN 260 (300)
T ss_dssp ---TTTTEEEEECT---T-CCEEEEECSSTTCCEEEEEECSTTC-EEEEETTT---TEEEEECTTS
T ss_pred ---cCCCEEEEEcC---C-CcEEEEECCCCCCCceEEEECCCCC-EEEeccCC---CeEEEECCCC
Confidence 12346888873 3 33333321 223345688999987 55554222 2788898843
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.05 Score=63.60 Aligned_cols=124 Identities=6% Similarity=-0.115 Sum_probs=71.8
Q ss_pred cCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcE
Q 002209 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTY 537 (953)
Q Consensus 458 ~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~ 537 (953)
...+.|.+.+..|+++.... .+|+++++++. ....+.........+ +++.+.++.|++...
T Consensus 351 ~~~ld~d~~~~~ly~sD~~~---~~I~r~~~~g~--~~~~v~~~~~~~p~G------lAvD~~~~~lY~tD~-------- 411 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDDEV---RAIRRSFIDGS--GSQFVVTAQIAHPDG------IAVDWVARNLYWTDT-------- 411 (619)
T ss_dssp EEEEEEETTTTEEEEEETTT---TEEEEEETTSC--SCEEEECSSCSCCCE------EEEETTTTEEEEEET--------
T ss_pred cEEEEEEcCCCeEEEEeCCC---CeEEEEEcCCC--ccEEEEECCCCCcCc------eEEecccCcEEEEeC--------
Confidence 34578888888888875432 37999998874 333333222111111 556655666665531
Q ss_pred EEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECC
Q 002209 538 ILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWP 617 (953)
Q Consensus 538 ~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 617 (953)
+ ...|.+.+++++..+.|....- ..... .++.|....++++-+.. .+.|++.+++
T Consensus 412 ------~------~~~I~v~~~~G~~~~~l~~~~l----~~P~~-------iavdp~~G~ly~tD~g~--~~~I~r~~~d 466 (619)
T 3s94_A 412 ------G------TDRIEVTRLNGTMRKILISEDL----EEPRA-------IVLDPMVGYMYWTDWGE--IPKIERAALD 466 (619)
T ss_dssp ------T------TTEEEEEETTSCSCEEEECTTC----CSEEE-------EEEETTTTEEEEEECSS--SCEEEEEETT
T ss_pred ------C------CCcEEEEeCCCCeEEEEEECCC----CCeee-------EEEEcCCCcEEEecCCC--CCEEEEEccC
Confidence 1 2358888887766555543221 11111 35667667788776543 4678988887
Q ss_pred CCCeeEEe
Q 002209 618 DKKSCQIT 625 (953)
Q Consensus 618 ~g~~~~Lt 625 (953)
+...+.|.
T Consensus 467 G~~~~~l~ 474 (619)
T 3s94_A 467 GSDRVVLV 474 (619)
T ss_dssp SCSCEEEE
T ss_pred CCccEEEE
Confidence 66555554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0011 Score=70.45 Aligned_cols=238 Identities=13% Similarity=0.073 Sum_probs=121.6
Q ss_pred eecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 182 l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
+..++.+.....++|+|||+ |+++.. ....|++++.+++... ....+.. ...+++++||+ |+++
T Consensus 25 ~~~~p~~~~pegia~~~~g~-lyv~d~--------~~~~I~~~d~~g~~~~-~~~~~~~-----p~gia~~~dG~-l~va 88 (306)
T 2p4o_A 25 ITSFPVNTFLENLASAPDGT-IFVTNH--------EVGEIVSITPDGNQQI-HATVEGK-----VSGLAFTSNGD-LVAT 88 (306)
T ss_dssp EEEECTTCCEEEEEECTTSC-EEEEET--------TTTEEEEECTTCCEEE-EEECSSE-----EEEEEECTTSC-EEEE
T ss_pred eEeCCCCCCcceEEECCCCC-EEEEeC--------CCCeEEEECCCCceEE-EEeCCCC-----ceeEEEcCCCc-EEEE
Confidence 33344444566789999997 555431 2568999998875433 2222221 55788999998 4444
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC---Cccccc
Q 002209 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP---AVYTSL 337 (953)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~---~~~~~~ 337 (953)
... . ....|++++. +|+.+.+... .....+
T Consensus 89 d~~--------------------------------------~--------~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~ 122 (306)
T 2p4o_A 89 GWN--------------------------------------A--------DSIPVVSLVKSDGTVETLLTLPDAIFLNGI 122 (306)
T ss_dssp EEC--------------------------------------T--------TSCEEEEEECTTSCEEEEEECTTCSCEEEE
T ss_pred ecc--------------------------------------C--------CcceEEEEcCCCCeEEEEEeCCCccccCcc
Confidence 100 0 1124777787 7776554321 122233
Q ss_pred ccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEec-cCCCcccCCccccccccCccceeeccCCCCceEE
Q 002209 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELC-DLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (953)
Q Consensus 338 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~-~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~ 416 (953)
+..+++ .+++.. . ..+.||++|.+++..+... ........+. ........+ +|||+.+++.
T Consensus 123 ~~~~~~-~~~v~d-~-----------~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~---~~~~~pngi--s~dg~~lyv~ 184 (306)
T 2p4o_A 123 TPLSDT-QYLTAD-S-----------YRGAIWLIDVVQPSGSIWLEHPMLARSNSE---SVFPAANGL--KRFGNFLYVS 184 (306)
T ss_dssp EESSSS-EEEEEE-T-----------TTTEEEEEETTTTEEEEEEECGGGSCSSTT---CCSCSEEEE--EEETTEEEEE
T ss_pred cccCCC-cEEEEE-C-----------CCCeEEEEeCCCCcEeEEEECCcccccccc---CCCCcCCCc--CcCCCEEEEE
Confidence 334444 343332 1 1237888888754322110 1000000000 000122234 8998765554
Q ss_pred EEeccCCCcccccccCCeEEEEecCCCCC-CC---ceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCC
Q 002209 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQG-EG---PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKD 492 (953)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~g-~~---~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~ 492 (953)
+ ...+.|+++++ ++ ++ .+.+.. ......+++++||+ |+.+ .... .+|++++.++
T Consensus 185 -d-----------~~~~~I~~~~~---~~~g~~~~~~~~~~-~~~P~gi~vd~dG~-l~va-~~~~--~~V~~~~~~G-- 242 (306)
T 2p4o_A 185 -N-----------TEKMLLLRIPV---DSTDKPGEPEIFVE-QTNIDDFAFDVEGN-LYGA-THIY--NSVVRIAPDR-- 242 (306)
T ss_dssp -E-----------TTTTEEEEEEB---CTTSCBCCCEEEEE-SCCCSSEEEBTTCC-EEEE-CBTT--CCEEEECTTC--
T ss_pred -e-----------CCCCEEEEEEe---CCCCCCCccEEEec-cCCCCCeEECCCCC-EEEE-eCCC--CeEEEECCCC--
Confidence 2 23468899986 32 22 222222 23456789999996 4444 3322 3688898764
Q ss_pred CCcEEee--cCCCccccCCCCCCCeEec---cCCCEEEEEe
Q 002209 493 VAPRILF--DRSSEDVYSDPGSPMMRRT---STGTYVIAKI 528 (953)
Q Consensus 493 ~~~~~~~--~~~~~~~~~~~~~p~~~~S---pDG~~l~~~~ 528 (953)
+...+. ........+ +.|+ ||+++|+...
T Consensus 243 -~~~~~~~~~~~~~~p~~------~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 243 -STTIIAQAEQGVIGSTA------VAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp -CEEEEECGGGTCTTEEE------EEECCSTTTTTEEEEEE
T ss_pred -CEEEEeecccccCCceE------EEEecccCCCCEEEEEC
Confidence 222221 111111111 6677 7888877665
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00046 Score=70.86 Aligned_cols=198 Identities=10% Similarity=0.013 Sum_probs=114.2
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
.....|+||| +|+.+.. ..+...|.++|+++|+..+-...+.. ......+.+|+.|+.+.
T Consensus 23 ~~Gl~~~~dg-~Lyvstg------~~~~s~v~~iD~~tg~v~~~i~l~~~-----~fgeGi~~~g~~lyv~t-------- 82 (266)
T 2iwa_A 23 TQGLVYAEND-TLFESTG------LYGRSSVRQVALQTGKVENIHKMDDS-----YFGEGLTLLNEKLYQVV-------- 82 (266)
T ss_dssp EEEEEECSTT-EEEEEEC------STTTCEEEEEETTTCCEEEEEECCTT-----CCEEEEEEETTEEEEEE--------
T ss_pred cccEEEeCCC-eEEEECC------CCCCCEEEEEECCCCCEEEEEecCCC-----cceEEEEEeCCEEEEEE--------
Confidence 3567899996 5555431 23467999999999987654333322 11223444567777661
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCCCcccccccCCCCcEEEE
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPPAVYTSLDPSPDEKYILI 348 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~~~~~~~~~SpDG~~l~~ 348 (953)
.....++++|. +++. ..+..+ ......+++||++|+.
T Consensus 83 ----------------------------------------~~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~v 121 (266)
T 2iwa_A 83 ----------------------------------------WLKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYG 121 (266)
T ss_dssp ----------------------------------------TTCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEE
T ss_pred ----------------------------------------ecCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEE
Confidence 03357889998 7643 344322 1234568899999876
Q ss_pred EEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
+. . .+.|+++|.++.+ .+.+.-... ..|. .....+.|. ||+ +|...
T Consensus 122 s~-g------------s~~l~viD~~t~~v~~~I~Vg~~--~~p~------~~~nele~~-dg~--lyvn~--------- 168 (266)
T 2iwa_A 122 SD-G------------TSILYEIDPHTFKLIKKHNVKYN--GHRV------IRLNELEYI-NGE--VWANI--------- 168 (266)
T ss_dssp EC-S------------SSEEEEECTTTCCEEEEEECEET--TEEC------CCEEEEEEE-TTE--EEEEE---------
T ss_pred EC-C------------CCeEEEEECCCCcEEEEEEECCC--Cccc------ccceeEEEE-CCE--EEEec---------
Confidence 53 1 2389999998643 444432110 0111 112346677 663 44421
Q ss_pred ccccCCeEEEEecCCCCCCCc-eEEeecc-------------cccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 428 EVTPRDIIYTQQAEPVQGEGP-EILHKLD-------------LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~-~~l~~~~-------------~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
...+.|.++|. ..++. ..+.-.. ....+++|+||+++++.+.... .+|+.+++..
T Consensus 169 --~~~~~V~vID~---~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~---~~v~~i~l~~ 237 (266)
T 2iwa_A 169 --WQTDCIARISA---KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW---PKLFEIKLHL 237 (266)
T ss_dssp --TTSSEEEEEET---TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC---SEEEEEEEEE
T ss_pred --CCCCeEEEEEC---CCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC---CeEEEEEEec
Confidence 23568999995 44443 3342211 1235799999999987765332 3788887654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00026 Score=84.42 Aligned_cols=180 Identities=13% Similarity=-0.063 Sum_probs=110.5
Q ss_pred cceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhh
Q 002209 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (953)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (953)
...|+++++++++...+...... ...++|.+++..||++.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~-----p~gla~d~~~~~Ly~sD----------------------------------- 424 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSD----------------------------------- 424 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTT-----CCCCEEETTTTEEEECC-----------------------------------
T ss_pred ccceEEEeCCCCcceeeeccCcc-----eEEEccccccCeEEEEe-----------------------------------
Confidence 35788899988776655433221 45789999888888660
Q ss_pred hcCCcchhhhhhhhccceEEEEEcCC-----ceeEeC-CC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEE
Q 002209 298 LLKDEYDEDLFDYYATTQLVLVSLDG-----TVKEIG-PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (953)
Q Consensus 298 ~~~~~~d~~~~~~~~~~~l~~~~~~g-----~~~~l~-~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~ 370 (953)
. ....|++++++| ....+. .. .....+++.+.++.|+++.. ....|++
T Consensus 425 ----~---------~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~------------~~~~I~v 479 (699)
T 1n7d_A 425 ----L---------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS------------VLGTVSV 479 (699)
T ss_dssp ----T---------TTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCT------------TTSCEEE
T ss_pred ----c---------CCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEec------------cCCeEEE
Confidence 0 224577777733 222222 22 34556778877777766531 1347899
Q ss_pred EeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE
Q 002209 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (953)
Q Consensus 371 ~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~ 450 (953)
++++++..+.+..... ..++.+++.|++..|++. +. .....|+++++ +|...+.
T Consensus 480 ~d~dg~~~~~l~~~~~------------~~P~giavDp~~g~ly~t-d~----------~~~~~I~~~~~---dG~~~~~ 533 (699)
T 1n7d_A 480 ADTKGVKRKTLFREQG------------SKPRAIVVDPVHGFMYWT-DW----------GTPAKIKKGGL---NGVDIYS 533 (699)
T ss_dssp EBSSSCCEEEECCCSS------------CCCCCEECCSSSSCCEEC-CC----------SSSCCEEBCCS---SSCCCCE
T ss_pred EecCCCceEEEEeCCC------------CCcceEEEccCCCcEEEc-cc----------CCCCeEEEEeC---CCCCeeE
Confidence 9998877665543211 234578899987765443 21 12357888875 5555544
Q ss_pred Eee-cccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 451 LHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 451 l~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
+.. ......+++|+|++++|+++.... .+|+++++++.
T Consensus 534 l~~~~l~~PnGlavd~~~~~LY~aD~~~---~~I~~~d~dG~ 572 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLLSGRLYWVDSKL---HSISSIDVNGG 572 (699)
T ss_dssp ESCSSCSSCCCEEECTTTCCEEEEETTT---TEEEEECSSSS
T ss_pred EEeCCCCCccEEEEeccCCEEEEEecCC---CeEEEEccCCC
Confidence 432 233456799999999998876432 37999999873
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0034 Score=73.66 Aligned_cols=189 Identities=12% Similarity=0.056 Sum_probs=123.6
Q ss_pred CeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002209 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (953)
Q Consensus 201 ~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (953)
..|+|+. ...|..+++++.....+...... .. ...++|.+++..||++..
T Consensus 7 ~~Ll~s~----------~~~I~~i~l~~~~~~~~~~~~~~--~~-~~~l~~d~~~~~lywtD~----------------- 56 (628)
T 4a0p_A 7 AFLLFSR----------RADIRRISLETNNNNVAIPLTGV--KE-ASALDFDVTDNRIYWTDI----------------- 56 (628)
T ss_dssp CEEEEEE----------TTEEEEEESSCTTCEEECCCCSC--SC-EEEEEEETTTTEEEEEET-----------------
T ss_pred cEEEEEe----------CCcEEEEECCCCCcceEEEcCCC--Cc-eEEEEEECCCCEEEEEEC-----------------
Confidence 3678864 56899999998654433222221 11 447889998888887610
Q ss_pred eeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCC-ceeEe-CCC-CcccccccCCCCcEEEEEEecCCccc
Q 002209 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEI-GPP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (953)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g-~~~~l-~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~ 357 (953)
....|++++++| ..+.+ ..+ .....+++.+.++.|+++...
T Consensus 57 -------------------------------~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~----- 100 (628)
T 4a0p_A 57 -------------------------------SLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTG----- 100 (628)
T ss_dssp -------------------------------TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT-----
T ss_pred -------------------------------CCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECC-----
Confidence 235788888844 33333 333 456678888888888777521
Q ss_pred cccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEE
Q 002209 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (953)
Q Consensus 358 ~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~ 437 (953)
...|++.+++|+..+.+..... ..++.++..|... .+||++. .....|++
T Consensus 101 -------~~~I~v~~~dG~~~~~l~~~~l------------~~P~~iavdp~~G-~lY~tD~----------g~~~~I~r 150 (628)
T 4a0p_A 101 -------TNRIEVSKLDGQHRQVLVWKDL------------DSPRALALDPAEG-FMYWTEW----------GGKPKIDR 150 (628)
T ss_dssp -------TTEEEEEETTSTTCEEEECSSC------------CCEEEEEEETTTT-EEEEEEC----------SSSCEEEE
T ss_pred -------CCEEEEEecCCCcEEEEEeCCC------------CCcccEEEccCCC-eEEEeCC----------CCCCEEEE
Confidence 2479999999876655543211 2346788988654 4566432 12458999
Q ss_pred EecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 438 ~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
+++ +|...+.+...-....++++++++++|+++.... .+|+.+++++.
T Consensus 151 ~~~---dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~---~~I~~~d~dG~ 198 (628)
T 4a0p_A 151 AAM---DGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDT---NLIESSNMLGL 198 (628)
T ss_dssp EET---TSCSCEEEECSCSSEEEEEEETTTTEEEEEETTT---TEEEEEETTSC
T ss_pred EeC---CCCceEEEECCCCCcceEEEccccCEEEEEECCC---CEEEEEcCCCC
Confidence 886 7777766655444556789999999998875432 37999999885
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=97.86 E-value=2.4e-05 Score=82.55 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=45.4
Q ss_pred cEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCccc---E
Q 002209 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFC---C 786 (953)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~---p~~~~---a 786 (953)
+.|+.++.. +. ...........|+.+.++.+ . ...++.++||||||.+|..++.+. |+.+. .
T Consensus 49 ~~v~~~d~~---~~----~~~~~~~~~a~~~~~~i~~~---~--~~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~ 116 (283)
T 3tjm_A 49 IPTYGLQCT---RA----APLDSIHSLAAYYIDCIRQV---Q--PEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNS 116 (283)
T ss_dssp SCEEEECCC---TT----SCCSCHHHHHHHHHHHHTTT---C--CSSCCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCE
T ss_pred ceEEEEecC---CC----CCCCCHHHHHHHHHHHHHHh---C--CCCCEEEEEECHhHHHHHHHHHHHHHcCCCCCccce
Confidence 888886662 21 11123455555555544322 1 125899999999999999999865 67788 8
Q ss_pred EEEcccC
Q 002209 787 GIARSGA 793 (953)
Q Consensus 787 ~v~~~~~ 793 (953)
+|++++.
T Consensus 117 lvlid~~ 123 (283)
T 3tjm_A 117 LFLFDGS 123 (283)
T ss_dssp EEEESCC
T ss_pred EEEEcCC
Confidence 8887754
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0022 Score=69.44 Aligned_cols=180 Identities=13% Similarity=0.053 Sum_probs=92.1
Q ss_pred cceEEEEEc-CCc-eeEeCCC-------CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEE-ec
Q 002209 313 TTQLVLVSL-DGT-VKEIGPP-------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LC 382 (953)
Q Consensus 313 ~~~l~~~~~-~g~-~~~l~~~-------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~-l~ 382 (953)
...|+++|+ +|+ .+.+..+ .....++++|++..++++.... .....|+++|++++.... +.
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~---------~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP---------DDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS---------GGGCEEEEEETTTCCEEEECT
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc---------CCCCeEEEEECCCCCEEEEec
Confidence 357889998 786 3433221 2346788998877666654210 012378999998555444 32
Q ss_pred cCCCccc--CCccccc--------------cccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCC
Q 002209 383 DLPLAED--IPIAFNS--------------VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE 446 (953)
Q Consensus 383 ~~~~~~~--~p~~~~~--------------~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~ 446 (953)
.++.... .....++ ...+...++|||||+.+++. + .....+|.++.+....+
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~-~-----------~~~~~l~~~~~~~~~~~ 230 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLS-P-----------MHSTSMYRIKSADLSNL 230 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEE-E-----------SSCSEEEEEEHHHHTCT
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEE-e-----------CCCCeEEEEEHHHhcCC
Confidence 2111100 0000111 01234679999999877665 1 11337888873111111
Q ss_pred Cc--------eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCC-CccccCCCCCCCeEe
Q 002209 447 GP--------EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS-SEDVYSDPGSPMMRR 517 (953)
Q Consensus 447 ~~--------~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~ 517 (953)
.. ...........++++++||+ |+++.... .+|++++..++ +...+...+ .....+ +++
T Consensus 231 ~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~~~---~~V~~~d~~~G--~~~~~~~~~~~~~p~~------va~ 298 (343)
T 2qe8_A 231 QLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLAH---SAIGVITSADR--AYKLLVTDEKLSWTDS------FNF 298 (343)
T ss_dssp TCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEGGG---TEEEEEETTTT--EEEEEEECGGGSCEEE------EEE
T ss_pred CCChhhhhcceEecccCCCCceEEECCCCC-EEEEccCC---CeEEEEECCCC--CEEEEEECCceecCCe------eEE
Confidence 10 01112233456799999986 45443332 27899998333 333333221 111111 678
Q ss_pred ccCCCEEE
Q 002209 518 TSTGTYVI 525 (953)
Q Consensus 518 SpDG~~l~ 525 (953)
++||+.++
T Consensus 299 ~~~g~l~v 306 (343)
T 2qe8_A 299 GSDGYLYF 306 (343)
T ss_dssp CTTSCEEE
T ss_pred CCCCcEEE
Confidence 88876433
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00097 Score=68.42 Aligned_cols=176 Identities=9% Similarity=-0.008 Sum_probs=99.4
Q ss_pred ccceEEEEEc-CCceeE-eCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcc
Q 002209 312 ATTQLVLVSL-DGTVKE-IGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAE 388 (953)
Q Consensus 312 ~~~~l~~~~~-~g~~~~-l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~ 388 (953)
+.+.|..+|+ +|+... +.-+.......++++|++|+..... .+.++++|.++.+ .+.+...
T Consensus 42 ~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~------------~~~v~viD~~t~~v~~~i~~g---- 105 (266)
T 2iwa_A 42 GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL------------KNIGFIYDRRTLSNIKNFTHQ---- 105 (266)
T ss_dssp TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT------------CSEEEEEETTTTEEEEEEECC----
T ss_pred CCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec------------CCEEEEEECCCCcEEEEEECC----
Confidence 3467999999 886543 3222222222345567777666522 3489999998644 3344321
Q ss_pred cCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc--c---ccCCeee
Q 002209 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--L---RYGGISW 463 (953)
Q Consensus 389 ~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~--~---~~~~~~~ 463 (953)
. ......++||+.++.. ++.+.|+++|. .+......+.-+. . ..+.+.|
T Consensus 106 -~----------~~g~glt~Dg~~l~vs-------------~gs~~l~viD~--~t~~v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 106 -M----------KDGWGLATDGKILYGS-------------DGTSILYEIDP--HTFKLIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp -S----------SSCCEEEECSSSEEEE-------------CSSSEEEEECT--TTCCEEEEEECEETTEECCCEEEEEE
T ss_pred -C----------CCeEEEEECCCEEEEE-------------CCCCeEEEEEC--CCCcEEEEEEECCCCcccccceeEEE
Confidence 0 1235578899876654 33568999984 3333333332211 1 2345677
Q ss_pred ccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCC------------C-ccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS------------S-EDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 464 SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~------------~-~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
. || +|+...+. .. .|.++|+.++. .....+.. . ....+ ++++|||+.++....
T Consensus 160 ~-dg-~lyvn~~~-~~--~V~vID~~tg~--V~~~I~~~g~~~~~~~~~~~~~~v~nG------Ia~~~~~~~lfVTgk- 225 (266)
T 2iwa_A 160 I-NG-EVWANIWQ-TD--CIARISAKDGT--LLGWILLPNLRKKLIDEGFRDIDVLNG------IAWDQENKRIFVTGK- 225 (266)
T ss_dssp E-TT-EEEEEETT-SS--EEEEEETTTCC--EEEEEECHHHHHHHHHTTCTTCCCEEE------EEEETTTTEEEEEET-
T ss_pred E-CC-EEEEecCC-CC--eEEEEECCCCc--EEEEEECCCcccccccccccccCceEE------EEEcCCCCEEEEECC-
Confidence 7 76 45544433 23 79999999863 22222211 0 01112 789999988776652
Q ss_pred ccCCCcEEEEecCCCCCCCCCCeEEEEECCCC
Q 002209 531 ENDEGTYILLNGNGATPEGNIPFLDLFDINTG 562 (953)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~ 562 (953)
..+.|+++++...
T Consensus 226 -------------------~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 226 -------------------LWPKLFEIKLHLV 238 (266)
T ss_dssp -------------------TCSEEEEEEEEEC
T ss_pred -------------------CCCeEEEEEEecc
Confidence 2457888887554
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.001 Score=72.06 Aligned_cols=68 Identities=9% Similarity=0.000 Sum_probs=38.0
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCc--cccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI--YLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~--~~~~~~~~~~wspDg~~l~~~ 261 (953)
.+..+.++|||+ |+++.. .. .......|+++|+++|+..+....+.. ........+++++++..++++
T Consensus 68 ~p~gv~~d~~g~-L~v~D~-g~--~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvt 137 (343)
T 2qe8_A 68 TVLGIKSDGNGI-VWMLDN-GN--QSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYIS 137 (343)
T ss_dssp CEEEEEECSSSE-EEEEEC-HH--HHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEE
T ss_pred EeeEEEEcCCCc-EEEEcC-CC--CcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEE
Confidence 566778999986 444321 10 001146899999998874332222211 001114578888876677665
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.011 Score=61.91 Aligned_cols=193 Identities=16% Similarity=0.112 Sum_probs=106.6
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
....+.+++||+ |++.. .....|++++.+ ++...+...... .....+++.++|+..+.. .
T Consensus 21 ~p~~i~~d~~g~-l~v~~--------~~~~~v~~~~~~-~~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~-~------ 80 (300)
T 2qc5_A 21 GPYGITSSEDGK-VWFTQ--------HKANKISSLDQS-GRIKEFEVPTPD---AKVMCLIVSSLGDIWFTE-N------ 80 (300)
T ss_dssp CEEEEEECTTSC-EEEEE--------TTTTEEEEECTT-SCEEEEECSSTT---CCEEEEEECTTSCEEEEE-T------
T ss_pred CcceeeECCCCC-EEEEc--------CCCCeEEEECCC-CceEEEECCCCC---CcceeEEECCCCCEEEEe-c------
Confidence 456678899987 44432 125689999988 665543221110 114577788888744432 0
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCC--C-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP--P-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~--~-~~~~~~~~SpDG~~l 346 (953)
....|++++.+|+.+.+.. . .....++++++|+..
T Consensus 81 ------------------------------------------~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~ 118 (300)
T 2qc5_A 81 ------------------------------------------GANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIW 118 (300)
T ss_dssp ------------------------------------------TTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEE
T ss_pred ------------------------------------------CCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEE
Confidence 2245777777555443332 2 456678889999743
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (953)
++... ...|+.++.++ ....+.. +.. ...+..+++.+||+ +|+..
T Consensus 119 -v~~~~------------~~~i~~~~~~g-~~~~~~~-~~~----------~~~~~~i~~d~~g~--l~v~~-------- 163 (300)
T 2qc5_A 119 -FTQLN------------GDRIGKLTADG-TIYEYDL-PNK----------GSYPAFITLGSDNA--LWFTE-------- 163 (300)
T ss_dssp -EEETT------------TTEEEEECTTS-CEEEEEC-SST----------TCCEEEEEECTTSS--EEEEE--------
T ss_pred -EEccC------------CCeEEEECCCC-CEEEccC-CCC----------CCCceeEEECCCCC--EEEEe--------
Confidence 33311 23688888873 3333221 100 02345788999997 33321
Q ss_pred cccccCCeEEEEecCCCCCCCceEEee--cccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 427 VEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 427 ~~~~~~~~l~~~d~~~~~g~~~~~l~~--~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
.....|++++. + ++...+.. .......+.++++|+ |+++... .. .|++++.++
T Consensus 164 ---~~~~~i~~~~~---~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~-~~--~i~~~~~~g 218 (300)
T 2qc5_A 164 ---NQNNSIGRITN---T-GKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIM-GN--KIGRITTTG 218 (300)
T ss_dssp ---TTTTEEEEECT---T-CCEEEEECSSTTCCEEEEEECTTSS-EEEEETT-TT--EEEEECTTC
T ss_pred ---cCCCeEEEECC---C-CcEEEeeCCCCCCCcceEEECCCCC-EEEEccC-CC--EEEEEcCCC
Confidence 12347888873 3 33333321 122345678889885 4444332 22 688998843
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0023 Score=65.20 Aligned_cols=210 Identities=15% Similarity=0.153 Sum_probs=114.1
Q ss_pred eeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEE
Q 002209 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (953)
Q Consensus 180 ~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~ 259 (953)
+.|.+.. ...+..+|.||+++|+.+.+ +...|+.+|+++...+++.-.+... .+.+++.++|++++
T Consensus 20 ~~l~g~~--~~lSGla~~~~~~~L~aV~d--------~~~~I~~ld~~g~v~~~i~l~g~~D----~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 20 KEIAGIT--NNISSLTWSAQSNTLFSTIN--------KPAAIVEMTTNGDLIRTIPLDFVKD----LETIEYIGDNQFVI 85 (255)
T ss_dssp EECTTCC--SCEEEEEEETTTTEEEEEEE--------TTEEEEEEETTCCEEEEEECSSCSS----EEEEEECSTTEEEE
T ss_pred eECCCcc--cCcceeEEeCCCCEEEEEEC--------CCCeEEEEeCCCCEEEEEecCCCCC----hHHeEEeCCCEEEE
Confidence 4444443 25888999999988887664 3678999999844444442211111 66888998887444
Q ss_pred EEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CCce---eEe------
Q 002209 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTV---KEI------ 328 (953)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g~~---~~l------ 328 (953)
.. + +...|+++++ .++. ..+
T Consensus 86 s~----------------------------------------E---------~~~~l~~~~v~~~~~i~~~~~~~~~~~~ 116 (255)
T 3qqz_A 86 SD----------------------------------------E---------RDYAIYVISLTPNSEVKILKKIKIPLQE 116 (255)
T ss_dssp EE----------------------------------------T---------TTTEEEEEEECTTCCEEEEEEEECCCSS
T ss_pred EE----------------------------------------C---------CCCcEEEEEcCCCCeeeeeeeecccccc
Confidence 22 1 1134445544 2211 111
Q ss_pred -CCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEe--ccCceEEEeccCCCcccCCccccccccCcccee
Q 002209 329 -GPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWT--TDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (953)
Q Consensus 329 -~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d--~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (953)
..+.+...++|+|++++|..+..+.+ ..|+.++ +.+...+.+......... ......+++
T Consensus 117 ~~~N~g~EGLA~d~~~~~L~va~E~~p-----------~~i~~~~g~~~~~~l~i~~~~~~~~~~------~~~d~S~l~ 179 (255)
T 3qqz_A 117 SPTNCGFEGLAYSRQDHTFWFFKEKNP-----------IEVYKVNGLLSSNELHISKDKALQRQF------TLDDVSGAE 179 (255)
T ss_dssp CCCSSCCEEEEEETTTTEEEEEEESSS-----------EEEEEEESTTCSSCCEEEECHHHHHTC------CSSCCCEEE
T ss_pred ccccCCcceEEEeCCCCEEEEEECcCC-----------ceEEEEcccccCCceeeecchhhcccc------ccCCceeEE
Confidence 11255678999999999988875542 2555555 111111211110000000 012345788
Q ss_pred eccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc----------cccCCeeeccCCceEEEEEe
Q 002209 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD----------LRYGGISWCDDSLALVYESW 475 (953)
Q Consensus 406 wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~----------~~~~~~~~SpDg~~l~~~~~ 475 (953)
+.|....++... +....|..+|. +|. +.....-. ....+++|.++|+ |+.+++
T Consensus 180 ~dp~tg~lliLS------------~~s~~L~~~d~---~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE 242 (255)
T 3qqz_A 180 FNQQKNTLLVLS------------HESRALQEVTL---VGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSE 242 (255)
T ss_dssp EETTTTEEEEEE------------TTTTEEEEECT---TCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEET
T ss_pred EcCCCCeEEEEE------------CCCCeEEEEcC---CCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcC
Confidence 888776665552 23456777774 443 33321111 1345689999997 555543
Q ss_pred cccCceEEEEEcCCC
Q 002209 476 YKTRRTRTWVISPGS 490 (953)
Q Consensus 476 ~~~~~~~l~~~d~~~ 490 (953)
.+ .+|++....
T Consensus 243 ~n----~~y~f~~~~ 253 (255)
T 3qqz_A 243 PN----RFYRFTPQS 253 (255)
T ss_dssp TT----EEEEEEC--
T ss_pred Cc----eEEEEEecC
Confidence 32 688876543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0057 Score=71.73 Aligned_cols=220 Identities=11% Similarity=0.060 Sum_probs=134.6
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
.|...++.. .....+..++.-.......|.+++..|+++.. ....|++++++++....+...+...
T Consensus 16 ~I~~i~l~~----~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~--------~~~~I~r~~~~g~~~~~v~~~g~~~-- 81 (628)
T 4a0p_A 16 DIRRISLET----NNNNVAIPLTGVKEASALDFDVTDNRIYWTDI--------SLKTISRAFMNGSALEHVVEFGLDY-- 81 (628)
T ss_dssp EEEEEESSC----TTCEEECCCCSCSCEEEEEEETTTTEEEEEET--------TTTEEEEEETTSCSCEEEECSSCSC--
T ss_pred cEEEEECCC----CCcceEEEcCCCCceEEEEEECCCCEEEEEEC--------CCCeEEEEECCCCCcEEEEeCCCCC--
Confidence 677777732 11111111222124667899999888888642 3578999999987655554322111
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCC
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG 323 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g 323 (953)
...++..+.++.||++. .....|.+++++|
T Consensus 82 --P~GlAvD~~~~~LY~tD------------------------------------------------~~~~~I~v~~~dG 111 (628)
T 4a0p_A 82 --PEGMAVDWLGKNLYWAD------------------------------------------------TGTNRIEVSKLDG 111 (628)
T ss_dssp --CCEEEEETTTTEEEEEE------------------------------------------------TTTTEEEEEETTS
T ss_pred --cceEEEEeCCCEEEEEE------------------------------------------------CCCCEEEEEecCC
Confidence 34677776777787661 0335788889855
Q ss_pred c-eeEeC-CC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002209 324 T-VKEIG-PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 324 ~-~~~l~-~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
. .+.+. .. .....+++.|...+|+++.... ...|+..+++|+..+.+... . ..
T Consensus 112 ~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~-----------~~~I~r~~~dG~~~~~l~~~-~------------~~ 167 (628)
T 4a0p_A 112 QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG-----------KPKIDRAAMDGSERTTLVPN-V------------GR 167 (628)
T ss_dssp TTCEEEECSSCCCEEEEEEETTTTEEEEEECSS-----------SCEEEEEETTSCSCEEEECS-C------------SS
T ss_pred CcEEEEEeCCCCCcccEEEccCCCeEEEeCCCC-----------CCEEEEEeCCCCceEEEECC-C------------CC
Confidence 3 33333 33 5667889999777787765211 23899999998876665431 1 23
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCc
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 480 (953)
+..++++++++.| ||++. ..+.|+.+++ +|+..+.+........++++ ++..|+++.+..
T Consensus 168 P~GlalD~~~~~L-Y~aD~-----------~~~~I~~~d~---dG~~~~v~~~~l~~P~glav--~~~~ly~tD~~~--- 227 (628)
T 4a0p_A 168 ANGLTIDYAKRRL-YWTDL-----------DTNLIESSNM---LGLNREVIADDLPHPFGLTQ--YQDYIYWTDWSR--- 227 (628)
T ss_dssp EEEEEEETTTTEE-EEEET-----------TTTEEEEEET---TSCSCEEEEECCSCEEEEEE--ETTEEEEEETTT---
T ss_pred cceEEEccccCEE-EEEEC-----------CCCEEEEEcC---CCCceEEeeccCCCceEEEE--ECCEEEEecCCC---
Confidence 3578999988765 55332 3457899986 66555544433223334555 345777776543
Q ss_pred eEEEEEcCCCC
Q 002209 481 TRTWVISPGSK 491 (953)
Q Consensus 481 ~~l~~~d~~~~ 491 (953)
..|+.++..++
T Consensus 228 ~~I~~~dk~tg 238 (628)
T 4a0p_A 228 RSIERANKTSG 238 (628)
T ss_dssp TEEEEEETTTC
T ss_pred CEEEEEECCCC
Confidence 37899987665
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0049 Score=65.93 Aligned_cols=145 Identities=12% Similarity=0.039 Sum_probs=77.9
Q ss_pred eEEEEEc-CCceeEeCCC------CcccccccCC-CCcEEEEEEecCCccc-----cccCCCCCcceEEEeccCceEEEe
Q 002209 315 QLVLVSL-DGTVKEIGPP------AVYTSLDPSP-DEKYILISSIHRPYSF-----IVPCGRFPRQVGVWTTDGIFVREL 381 (953)
Q Consensus 315 ~l~~~~~-~g~~~~l~~~------~~~~~~~~Sp-DG~~l~~~~~~~~~~~-----~~~~~~~~~~i~~~d~~g~~~~~l 381 (953)
.|++++. +|+.+.+... .....+++.| ||+ |.++.....+.. ........+.|+.+|.+++..+.+
T Consensus 102 ~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 102 HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 3667776 4554444321 2345688999 895 555432210000 000011234688888876665543
Q ss_pred ccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCC---CCceEEeeccccc
Q 002209 382 CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG---EGPEILHKLDLRY 458 (953)
Q Consensus 382 ~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g---~~~~~l~~~~~~~ 458 (953)
...- ..+..++|+|||+.+++. + .....|+++++ ++ +..+.+....+ .
T Consensus 181 ~~~~-------------~~p~gia~~~dg~~lyv~-d-----------~~~~~I~~~~~---~~~~~~~~~~~~~~~g-P 231 (322)
T 2fp8_A 181 LKEL-------------HVPGGAEVSADSSFVLVA-E-----------FLSHQIVKYWL---EGPKKGTAEVLVKIPN-P 231 (322)
T ss_dssp EEEE-------------SCCCEEEECTTSSEEEEE-E-----------GGGTEEEEEES---SSTTTTCEEEEEECSS-E
T ss_pred ccCC-------------ccCcceEECCCCCEEEEE-e-----------CCCCeEEEEEC---CCCcCCccceEEeCCC-C
Confidence 2210 123468999999865544 2 22457888886 33 23333333233 5
Q ss_pred CCeeeccCCceEEEEEecc-------cCceEEEEEcCCC
Q 002209 459 GGISWCDDSLALVYESWYK-------TRRTRTWVISPGS 490 (953)
Q Consensus 459 ~~~~~SpDg~~l~~~~~~~-------~~~~~l~~~d~~~ 490 (953)
..+.+.+||+ |+.+.... .....|+.++.++
T Consensus 232 ~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G 269 (322)
T 2fp8_A 232 GNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFG 269 (322)
T ss_dssp EEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTS
T ss_pred CCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCC
Confidence 5688999997 44444331 1124788898765
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0063 Score=67.96 Aligned_cols=136 Identities=7% Similarity=0.058 Sum_probs=79.6
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce--eecccCCCcc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIY 241 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~ 241 (953)
.|+++++.. +..+.+. +.......++|++||++|+++... .+.....++.++.+++-. +.+.....
T Consensus 160 ~I~~id~~~----~~v~~~~--~~~~~P~~ia~d~~G~~lyvad~~----~~~~~~~v~~~~~~g~~~~~~~l~~~~~-- 227 (430)
T 3tc9_A 160 PTRLIDFEK----EYVSTVY--SGLSKVRTICWTHEADSMIITNDQ----NNNDRPNNYILTRESGFKVITELTKGQN-- 227 (430)
T ss_dssp EEEEEETTT----TEEEEEE--CCCSCEEEEEECTTSSEEEEEECC----SCTTSEEEEEEEGGGTSCSEEEEEECSS--
T ss_pred cEEEEECCC----CEEEEEe--cCCCCcceEEEeCCCCEEEEEeCC----CCcccceEEEEeCCCceeeeeeeccCCC--
Confidence 567777632 3333332 223357789999999988775531 122234567677665432 22222111
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 321 (953)
...+++.|++..|+++. ....+|++++.
T Consensus 228 ----p~giavdp~~g~lyv~d------------------------------------------------~~~~~V~~~~~ 255 (430)
T 3tc9_A 228 ----CNGAETHPINGELYFNS------------------------------------------------WNAGQVFRYDF 255 (430)
T ss_dssp ----CCCEEECTTTCCEEEEE------------------------------------------------TTTTEEEEEET
T ss_pred ----ceEEEEeCCCCEEEEEE------------------------------------------------CCCCEEEEEEC
Confidence 34778889554566551 03357889998
Q ss_pred -CCceeEeC-CC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC
Q 002209 322 -DGTVKEIG-PP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (953)
Q Consensus 322 -~g~~~~l~-~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g 375 (953)
++....+. .. .....++|+|||++|+++... ...|++++.++
T Consensus 256 ~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~------------~~~I~~~~~d~ 301 (430)
T 3tc9_A 256 TTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN------------QHYILRSDYDW 301 (430)
T ss_dssp TTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT------------TTEEEEEEEET
T ss_pred CCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC------------CCEEEEEeCCc
Confidence 55542332 21 346678999999988777522 23788888774
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0041 Score=66.04 Aligned_cols=93 Identities=8% Similarity=0.058 Sum_probs=54.1
Q ss_pred CCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ceE---EEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002209 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFV---RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (953)
Q Consensus 340 SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~---~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~ 415 (953)
+|||++|+++... ...|+++++++ +.. +.+... ..+..+++++||+ + |
T Consensus 175 s~dg~~lyv~d~~------------~~~I~~~~~~~~g~~~~~~~~~~~--------------~~P~gi~vd~dG~-l-~ 226 (306)
T 2p4o_A 175 KRFGNFLYVSNTE------------KMLLLRIPVDSTDKPGEPEIFVEQ--------------TNIDDFAFDVEGN-L-Y 226 (306)
T ss_dssp EEETTEEEEEETT------------TTEEEEEEBCTTSCBCCCEEEEES--------------CCCSSEEEBTTCC-E-E
T ss_pred CcCCCEEEEEeCC------------CCEEEEEEeCCCCCCCccEEEecc--------------CCCCCeEECCCCC-E-E
Confidence 8999988877622 34788998874 221 111110 2345789999995 3 4
Q ss_pred EEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec---ccccCCeeec---cCCceEEEEEe
Q 002209 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL---DLRYGGISWC---DDSLALVYESW 475 (953)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~---~~~~~~~~~S---pDg~~l~~~~~ 475 (953)
..+. ..+.|.+++. + ++...+... .....+++|+ ||+++|+.+..
T Consensus 227 va~~-----------~~~~V~~~~~---~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 227 GATH-----------IYNSVVRIAP---D-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EECB-----------TTCCEEEECT---T-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred EEeC-----------CCCeEEEECC---C-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 4221 2457888873 4 443333111 1234567888 88888777654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0055 Score=65.52 Aligned_cols=128 Identities=11% Similarity=0.061 Sum_probs=69.8
Q ss_pred ccccccCC-CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeecc-CCC
Q 002209 334 YTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS-DKP 411 (953)
Q Consensus 334 ~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wsp-Dg~ 411 (953)
...+++++ +| .|++.... ..++++|.+++..+.+...... .+ ...+..+++.+ ||+
T Consensus 82 p~gi~~~~~~g-~l~v~d~~-------------~~i~~~d~~~g~~~~~~~~~~~--~~------~~~p~~i~~d~~~G~ 139 (322)
T 2fp8_A 82 TYDISYNLQNN-QLYIVDCY-------------YHLSVVGSEGGHATQLATSVDG--VP------FKWLYAVTVDQRTGI 139 (322)
T ss_dssp EEEEEEETTTT-EEEEEETT-------------TEEEEECTTCEECEEEESEETT--EE------CSCEEEEEECTTTCC
T ss_pred CceEEEcCCCC-cEEEEECC-------------CCEEEEeCCCCEEEEecccCCC--Cc------ccccceEEEecCCCE
Confidence 45577887 55 45555311 2578888877665555331100 00 01234688999 884
Q ss_pred CceEEEEeccCCCc---c---cccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEE
Q 002209 412 STLYWAETQDGGDA---K---VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (953)
Q Consensus 412 ~i~~~~~~~~~~~~---~---~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 485 (953)
+|+.+....-.. . ......+.|++++. ++++.+.+.........++|+|||+.|+++.... .+|++
T Consensus 140 --l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~---~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~---~~I~~ 211 (322)
T 2fp8_A 140 --VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP---STKETTLLLKELHVPGGAEVSADSSFVLVAEFLS---HQIVK 211 (322)
T ss_dssp --EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET---TTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGG---TEEEE
T ss_pred --EEEECCcccccccccceehcccCCCceEEEEeC---CCCEEEEeccCCccCcceEECCCCCEEEEEeCCC---CeEEE
Confidence 344332110000 0 00012357888884 4444444433334456789999999888775432 37999
Q ss_pred EcCCCC
Q 002209 486 ISPGSK 491 (953)
Q Consensus 486 ~d~~~~ 491 (953)
+++++.
T Consensus 212 ~~~~~~ 217 (322)
T 2fp8_A 212 YWLEGP 217 (322)
T ss_dssp EESSST
T ss_pred EECCCC
Confidence 988763
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00038 Score=76.86 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=32.3
Q ss_pred CcEEEEEeChHHHHHHHHHHh--------------------------CCCcccEEEEcccCCC
Q 002209 759 SKIAVGGHSYGAFMTANLLAH--------------------------APHLFCCGIARSGAYN 795 (953)
Q Consensus 759 ~~i~l~G~S~GG~~a~~~a~~--------------------------~p~~~~a~v~~~~~~d 795 (953)
+++.|+||||||.++..++.. +|++++.+|++++...
T Consensus 151 ~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~~V~slv~i~tP~~ 213 (431)
T 2hih_A 151 HPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNMVTSITTIATPHN 213 (431)
T ss_dssp BCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCSCEEEEEEESCCTT
T ss_pred CCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCcccceeEEEEECCCCC
Confidence 689999999999999998876 6889999999987543
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00068 Score=73.71 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=31.3
Q ss_pred CCcEEEEEeChHHHHHHHHHHh-------------------CC------CcccEEEEcccCCC
Q 002209 758 PSKIAVGGHSYGAFMTANLLAH-------------------AP------HLFCCGIARSGAYN 795 (953)
Q Consensus 758 ~~~i~l~G~S~GG~~a~~~a~~-------------------~p------~~~~a~v~~~~~~d 795 (953)
.+++.|+||||||.++..++.+ +| ++++.+|++++...
T Consensus 103 ~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~~~V~sLV~i~tP~~ 165 (387)
T 2dsn_A 103 GGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGHHFVLSVTTIATPHD 165 (387)
T ss_dssp TCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCCCEEEEEEESCCTT
T ss_pred CCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCccccccccceeEEEEECCCCC
Confidence 4689999999999999999872 35 68999999887543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.028 Score=62.66 Aligned_cols=158 Identities=8% Similarity=0.080 Sum_probs=94.0
Q ss_pred cccceEecc-CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 190 KLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 190 ~~~~~~wSP-DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
....++|+| ++..|+++.. ...|+++|++++....+...... ...++|+++|+.|+++......
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~---------~~~I~~id~~~~~v~~~~~~~~~-----P~~ia~d~~G~~lyvad~~~~~- 202 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGE---------QHPTRLIDFEKEYVSTVYSGLSK-----VRTICWTHEADSMIITNDQNNN- 202 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEB---------TEEEEEEETTTTEEEEEECCCSC-----EEEEEECTTSSEEEEEECCSCT-
T ss_pred CCCEEEECCCCCCeEEEEeC---------CCcEEEEECCCCEEEEEecCCCC-----cceEEEeCCCCEEEEEeCCCCc-
Confidence 456788998 5666666432 17899999998877666442221 4578999999988877110000
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCce---eEeCCCCcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTV---KEIGPPAVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~---~~l~~~~~~~~~~~SpDG~~ 345 (953)
....++.++.+|.. +.+........++++|++.+
T Consensus 203 -------------------------------------------~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~ 239 (430)
T 3tc9_A 203 -------------------------------------------DRPNNYILTRESGFKVITELTKGQNCNGAETHPINGE 239 (430)
T ss_dssp -------------------------------------------TSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCC
T ss_pred -------------------------------------------ccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCE
Confidence 01123444443322 22222244567889995556
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
|+++... ...|++++.+++....+...+.. ..++.++|+|||+.+++. +
T Consensus 240 lyv~d~~------------~~~V~~~~~~~~~~~~~~~~~~~-----------~~P~gia~~pdG~~lyv~-d------- 288 (430)
T 3tc9_A 240 LYFNSWN------------AGQVFRYDFTTQETTPLFTIQDS-----------GWEFHIQFHPSGNYAYIV-V------- 288 (430)
T ss_dssp EEEEETT------------TTEEEEEETTTTEEEEEEECSSS-----------SCCEEEEECTTSSEEEEE-E-------
T ss_pred EEEEECC------------CCEEEEEECCCCcEEEEEEcCCC-----------CcceeEEEcCCCCEEEEE-E-------
Confidence 7666522 24799999987766444322110 234679999999855444 2
Q ss_pred ccccccCCeEEEEec
Q 002209 426 KVEVTPRDIIYTQQA 440 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~ 440 (953)
.....|++++.
T Consensus 289 ----~~~~~I~~~~~ 299 (430)
T 3tc9_A 289 ----VNQHYILRSDY 299 (430)
T ss_dssp ----TTTTEEEEEEE
T ss_pred ----CCCCEEEEEeC
Confidence 22457777764
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0094 Score=60.35 Aligned_cols=194 Identities=10% Similarity=0.127 Sum_probs=108.5
Q ss_pred cceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002209 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (953)
Q Consensus 192 ~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~ 271 (953)
....|+ || +|+.+.. ..+...|.++|+++|+..+-...+.. ...-..+++|+.|+...
T Consensus 46 qGL~~~-~~-~LyestG------~~g~S~v~~vD~~Tgkv~~~~~l~~~-----~FgeGit~~g~~ly~lt--------- 103 (262)
T 3nol_A 46 EGFFYR-NG-YFYESTG------LNGRSSIRKVDIESGKTLQQIELGKR-----YFGEGISDWKDKIVGLT--------- 103 (262)
T ss_dssp EEEEEE-TT-EEEEEEE------ETTEEEEEEECTTTCCEEEEEECCTT-----CCEEEEEEETTEEEEEE---------
T ss_pred ceEEEE-CC-EEEEECC------CCCCceEEEEECCCCcEEEEEecCCc-----cceeEEEEeCCEEEEEE---------
Confidence 456787 65 5555442 23467899999999987544333332 11223455677887651
Q ss_pred CCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCCCcccccccCCCCcEEEEE
Q 002209 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPPAVYTSLDPSPDEKYILIS 349 (953)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~~~~~~~~~SpDG~~l~~~ 349 (953)
.....++++|. +++. ..+.-+. ....+++||++|+.+
T Consensus 104 ---------------------------------------w~~~~v~v~D~~t~~~~~ti~~~~--eG~glt~dg~~L~~S 142 (262)
T 3nol_A 104 ---------------------------------------WKNGLGFVWNIRNLRQVRSFNYDG--EGWGLTHNDQYLIMS 142 (262)
T ss_dssp ---------------------------------------SSSSEEEEEETTTCCEEEEEECSS--CCCCEEECSSCEEEC
T ss_pred ---------------------------------------eeCCEEEEEECccCcEEEEEECCC--CceEEecCCCEEEEE
Confidence 03357889998 7643 3443322 445777899987766
Q ss_pred EecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002209 350 SIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (953)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (953)
.. ...|+++|.++. ..+.+.-.. ...|. .....+.|. ||+ +|...
T Consensus 143 dG-------------s~~i~~iDp~T~~v~~~I~V~~--~g~~~------~~lNELe~~-~G~--lyan~---------- 188 (262)
T 3nol_A 143 DG-------------TPVLRFLDPESLTPVRTITVTA--HGEEL------PELNELEWV-DGE--IFANV---------- 188 (262)
T ss_dssp CS-------------SSEEEEECTTTCSEEEEEECEE--TTEEC------CCEEEEEEE-TTE--EEEEE----------
T ss_pred CC-------------CCeEEEEcCCCCeEEEEEEecc--CCccc------cccceeEEE-CCE--EEEEE----------
Confidence 41 237999998853 334433311 00111 111235676 674 44411
Q ss_pred cccCCeEEEEecCCCCCCCceEEeec------------ccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 429 VTPRDIIYTQQAEPVQGEGPEILHKL------------DLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 429 ~~~~~~l~~~d~~~~~g~~~~~l~~~------------~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
...+.|.++|. .+|.-...+.-. ....++++|+|++++|+.+... ..+||.+.+
T Consensus 189 -w~~~~I~vIDp--~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~---Wp~~~ev~~ 254 (262)
T 3nol_A 189 -WQTNKIVRIDP--ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL---WPKVFEITL 254 (262)
T ss_dssp -TTSSEEEEECT--TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT---CSEEEEEEE
T ss_pred -ccCCeEEEEEC--CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC---CCceEEEEE
Confidence 23457888884 443322333221 0123569999999998877532 236666543
|
| >1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0029 Score=63.83 Aligned_cols=152 Identities=15% Similarity=0.092 Sum_probs=85.1
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCC-CCcccCCCCCCCCcc---chHHHHHHHcCcE
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDA-AGQVRGSPNEFPRIG---STSVLLWLARGFA 714 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~la~~G~~ 714 (953)
.-.+.+....|..+..|++.... ++. ..|++|+++|||..+.-. .....-||..+..-+ ......|.+. ..
T Consensus 21 sGy~~v~~~~~~~lFywf~es~~-~~~---~~Pl~lwlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~sW~~~-an 95 (255)
T 1whs_A 21 SGYITVDEGAGRSLFYLLQEAPE-DAQ---PAPLVLWLNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKV-AN 95 (255)
T ss_dssp EEEEEEETTTTEEEEEEEECCCG-GGC---SCCEEEEECCTTTBCTTTTHHHHTSSSEEECGGGCCEEECTTCGGGT-SE
T ss_pred EEEEECCCCCCcEEEEEEEEecC-CCC---CCCEEEEECCCCchHHHHHHHHhccCCeEecCCCCeeeeCccccccc-CC
Confidence 34566665567888888875432 222 379999999999776543 111112222221000 0000012222 45
Q ss_pred EEEcCCCCCCCCCChhhhhh----hHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEeChHHHHHHHHHHhC-----C-Cc
Q 002209 715 ILGGPTTPIIGEGDEEANDR----FVEQLVACAEAAVEEVVR-RGVAHPSKIAVGGHSYGAFMTANLLAHA-----P-HL 783 (953)
Q Consensus 715 V~~~~~~~~~G~G~~~~~~~----~~~~~~~D~~~~~~~l~~-~~~~d~~~i~l~G~S~GG~~a~~~a~~~-----p-~~ 783 (953)
|+..|..-..|+........ .......|+..+++...+ .+.....++.|+|.||||..+..+|..- + -.
T Consensus 96 vlfiDqPvGtGfSy~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yi~GESYgG~yvp~la~~i~~~n~~~in 175 (255)
T 1whs_A 96 VLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVIN 175 (255)
T ss_dssp EEEECCSTTSTTCEESSGGGGGSCCHHHHHHHHHHHHHHHHHHCGGGTTCEEEEEEEETHHHHHHHHHHHHHHHTCSSCE
T ss_pred EEEEecCCCCccCCCcCccccccCCHHHHHHHHHHHHHHHHHhCHHhcCCCEEEEecCCccccHHHHHHHHHHcCCcccc
Confidence 55544322334433222211 234566777777765444 4455567899999999999987777521 1 24
Q ss_pred ccEEEEcccCCC
Q 002209 784 FCCGIARSGAYN 795 (953)
Q Consensus 784 ~~a~v~~~~~~d 795 (953)
++++++..|+.|
T Consensus 176 LkGi~ign~~~d 187 (255)
T 1whs_A 176 LKGFMVGNGLID 187 (255)
T ss_dssp EEEEEEEEECCB
T ss_pred cceEEecCCccC
Confidence 788998888765
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.013 Score=63.71 Aligned_cols=83 Identities=13% Similarity=0.027 Sum_probs=52.2
Q ss_pred ccceEEEEEc-CCceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE---EEeccCCCc
Q 002209 312 ATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV---RELCDLPLA 387 (953)
Q Consensus 312 ~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~---~~l~~~~~~ 387 (953)
..+.|+++++ ++....+. ..++.++|||+| +++...+ +.+.+|+.++++. +.+...+..
T Consensus 144 ~dG~L~v~dl~~~~~~~~~--~~Vs~v~WSpkG--~~vg~~d-------------g~i~~~~~~~~~~~~k~~I~~Pp~~ 206 (388)
T 1xip_A 144 SVNDLSALDLRTKSTKQLA--QNVTSFDVTNSQ--LAVLLKD-------------RSFQSFAWRNGEMEKQFEFSLPSEL 206 (388)
T ss_dssp TTSEEEEEETTTCCEEEEE--ESEEEEEECSSE--EEEEETT-------------SCEEEEEEETTEEEEEEEECCCHHH
T ss_pred CCCCEEEEEccCCcccccc--CCceEEEEcCCc--eEEEEcC-------------CcEEEEcCCCccccccceecCCccc
Confidence 3468889999 67655443 478899999999 4444422 3788899988774 344332211
Q ss_pred c-cCCccccccccCccceeeccCCCCceEE
Q 002209 388 E-DIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (953)
Q Consensus 388 ~-~~p~~~~~~~~~~~~~~wspDg~~i~~~ 416 (953)
. .. +....+.++.|.++++.++.+
T Consensus 207 ~~~~-----~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 207 EELP-----VEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp HTSC-----TTTSEEEEEEESSSSEEEEEE
T ss_pred cccc-----CCCeeEEEEEEecCCeEEEEE
Confidence 0 00 011345679999999866544
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.089 Score=53.44 Aligned_cols=115 Identities=14% Similarity=0.200 Sum_probs=71.0
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
..++.++|+||++.|+.+.+. +..|+.+|+++...+.+..... .....+++.+||.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~------------~~~I~~ld~~g~v~~~i~l~g~------------~D~EGIa~~~~g~ 82 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINK------------PAAIVEMTTNGDLIRTIPLDFV------------KDLETIEYIGDNQ 82 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEET------------TEEEEEEETTCCEEEEEECSSC------------SSEEEEEECSTTE
T ss_pred cCcceeEEeCCCCEEEEEECC------------CCeEEEEeCCCCEEEEEecCCC------------CChHHeEEeCCCE
Confidence 567889999999988877744 2378899998766666543111 1124577887774
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE---e------ecccccCCeeeccCCceEEEEEecccCceE
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL---H------KLDLRYGGISWCDDSLALVYESWYKTRRTR 482 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l---~------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 482 (953)
++.++. ..+.++++++ ...+....+ . .......+++|+|++++|+.+..+.. ..
T Consensus 83 --~~vs~E-----------~~~~l~~~~v--~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p--~~ 145 (255)
T 3qqz_A 83 --FVISDE-----------RDYAIYVISL--TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP--IE 145 (255)
T ss_dssp --EEEEET-----------TTTEEEEEEE--CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS--EE
T ss_pred --EEEEEC-----------CCCcEEEEEc--CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC--ce
Confidence 333222 2346777765 122221211 1 11223467999999999888776653 37
Q ss_pred EEEEc
Q 002209 483 TWVIS 487 (953)
Q Consensus 483 l~~~d 487 (953)
||.++
T Consensus 146 i~~~~ 150 (255)
T 3qqz_A 146 VYKVN 150 (255)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 89887
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.016 Score=58.64 Aligned_cols=167 Identities=10% Similarity=0.052 Sum_probs=90.1
Q ss_pred ccceEEEEEc-CCceeE-eCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcc
Q 002209 312 ATTQLVLVSL-DGTVKE-IGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAE 388 (953)
Q Consensus 312 ~~~~l~~~~~-~g~~~~-l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~ 388 (953)
+.+.|.++|+ +|++.. +.-+..+..-.++++|++|...... .+.++++|.++. ..+++....
T Consensus 63 g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~------------~~~v~v~D~~t~~~~~ti~~~~--- 127 (262)
T 3nol_A 63 GRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK------------NGLGFVWNIRNLRQVRSFNYDG--- 127 (262)
T ss_dssp TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------------SSEEEEEETTTCCEEEEEECSS---
T ss_pred CCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee------------CCEEEEEECccCcEEEEEECCC---
Confidence 4578999999 886433 3222333233356678888666422 348999999854 344444311
Q ss_pred cCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee--ccccc---CCeee
Q 002209 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRY---GGISW 463 (953)
Q Consensus 389 ~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~--~~~~~---~~~~~ 463 (953)
.....++||+.++.. ++.+.|+.+|. .+......+.- ....+ +.+.|
T Consensus 128 -------------eG~glt~dg~~L~~S-------------dGs~~i~~iDp--~T~~v~~~I~V~~~g~~~~~lNELe~ 179 (262)
T 3nol_A 128 -------------EGWGLTHNDQYLIMS-------------DGTPVLRFLDP--ESLTPVRTITVTAHGEELPELNELEW 179 (262)
T ss_dssp -------------CCCCEEECSSCEEEC-------------CSSSEEEEECT--TTCSEEEEEECEETTEECCCEEEEEE
T ss_pred -------------CceEEecCCCEEEEE-------------CCCCeEEEEcC--CCCeEEEEEEeccCCccccccceeEE
Confidence 134567888765443 34568999984 33333333322 12222 23667
Q ss_pred ccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCC-C-ccc---cCCCCCCC-eEeccCCCEEEEEe
Q 002209 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS-S-EDV---YSDPGSPM-MRRTSTGTYVIAKI 528 (953)
Q Consensus 464 SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~-~~~---~~~~~~p~-~~~SpDG~~l~~~~ 528 (953)
. ||+ |+...+.. . .|.++|+.++ +.....+.. . ... ......+. ++++|+++.|+...
T Consensus 180 ~-~G~-lyan~w~~-~--~I~vIDp~tG--~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 180 V-DGE-IFANVWQT-N--KIVRIDPETG--KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp E-TTE-EEEEETTS-S--EEEEECTTTC--BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred E-CCE-EEEEEccC-C--eEEEEECCCC--cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 6 674 66554443 2 7999999986 332222221 0 000 00000111 78888888777665
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.03 Score=60.50 Aligned_cols=235 Identities=11% Similarity=-0.013 Sum_probs=0.0
Q ss_pred ceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCC----CCC
Q 002209 114 LSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP----DGA 189 (953)
Q Consensus 114 ~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~----~~~ 189 (953)
++|+|||+ |.++... +.|++++ + +....+..++ ...
T Consensus 36 ia~~pdG~-l~V~e~~---------------------------------g~I~~i~--~----g~~~~~~~~~v~~~g~~ 75 (352)
T 2ism_A 36 LAFLPDGG-MLIAERP---------------------------------GRIRLFR--E----GRLSTYAELSVYHRGES 75 (352)
T ss_dssp EEECTTSC-EEEEETT---------------------------------TEEEEEE--T----TEEEEEEECCCCCSTTC
T ss_pred EEEcCCCe-EEEEeCC---------------------------------CeEEEEE--C----CCccEeecceEeecCCC
Q ss_pred cccceEeccC---CCeEEEEEeeccccCCCCc---ceEEEEECCCC---ceeecccCCC--ccccccccceEEecCCeEE
Q 002209 190 KLNFVTWSQD---GKHLAFSIRIDAEDSSSSK---LRVWVADVDTG---KARPLFQSPD--IYLNAIFDNFVWVNNSTLL 258 (953)
Q Consensus 190 ~~~~~~wSPD---G~~laf~~~~~~~~~~~~~---~~l~~~d~~~g---~~~~lt~~~~--~~~~~~~~~~~wspDg~~l 258 (953)
.....+|+|| +.+|+++.. .... ..|++++.+++ +.+.+...-. .........++|.||| .|
T Consensus 76 ~p~gia~~pdf~~~g~lYv~~~------~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~L 148 (352)
T 2ism_A 76 GLLGLALHPRFPQEPYVYAYRT------VAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-ML 148 (352)
T ss_dssp SEEEEEECTTTTTSCEEEEEEE------ECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CE
T ss_pred CceeEEECCCCCCCCEEEEEEe------cCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CE
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhcc---------------ceEEEEEcCC
Q 002209 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYAT---------------TQLVLVSLDG 323 (953)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---------------~~l~~~~~~g 323 (953)
+++ .. +.|++++.+|
T Consensus 149 yv~--------------------------------------------------~G~~~~~~~~~d~~~~~g~I~ri~~dG 178 (352)
T 2ism_A 149 YVT--------------------------------------------------TGEVYERELAQDLASLGGKILRLTPEG 178 (352)
T ss_dssp EEE--------------------------------------------------CCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred EEE--------------------------------------------------ECCCCCCccccCCCCCceEEEEEcCCC
Q ss_pred --------------ceeEeCCC-CcccccccCC-CCcEEEEEEecCCccccccCCCCCcceEEEeccCce-----EEEec
Q 002209 324 --------------TVKEIGPP-AVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-----VRELC 382 (953)
Q Consensus 324 --------------~~~~l~~~-~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-----~~~l~ 382 (953)
....+..+ .+...++|+| +| ++|+.+..... ..++.
T Consensus 179 ~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g-----------------------~l~v~d~g~~~~~~~~~dei~ 235 (352)
T 2ism_A 179 EPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTG-----------------------ELFSSEHGPSGEQGYGHDEVN 235 (352)
T ss_dssp SBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTC-----------------------CEEEEEECC------CCCEEE
T ss_pred CCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCC-----------------------CEEEEEcCCCCCCCCCCeEEE
Q ss_pred cCCCcc----------------cCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCC
Q 002209 383 DLPLAE----------------DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE 446 (953)
Q Consensus 383 ~~~~~~----------------~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~ 446 (953)
...... ..|...-.....+..++| .+|+.++-- .....|+++++ ++.
T Consensus 236 ~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~-------------~~~~~v~~v~~---~~~ 298 (352)
T 2ism_A 236 LIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAG-------------LRGQALLRLVL---EGE 298 (352)
T ss_dssp EECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEE-------------TTTTEEEEEEE---EEE
T ss_pred EeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEE-------------CCCCEEEEEEE---CCC
Q ss_pred C-------ceEEeecccccCCeeeccCCceEEEEEecccCce-------EEEEE
Q 002209 447 G-------PEILHKLDLRYGGISWCDDSLALVYESWYKTRRT-------RTWVI 486 (953)
Q Consensus 447 ~-------~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~-------~l~~~ 486 (953)
. ...+.........+++.||| .|+++.+...++. +||++
T Consensus 299 ~~~~~~~~~~~~~~~~~rp~~v~~~pdG-~lyv~~~~~~g~g~~~~~~~~i~ri 351 (352)
T 2ism_A 299 RGRWRVLRVETALSGFGRLREVQVGPDG-ALYVTTSNRDGRGQVRPGDDRVLRL 351 (352)
T ss_dssp TTEEEEEEEEEEEESSCCEEEEEECTTS-CEEEEECSTTTTSCCCTTCSCEEEE
T ss_pred CcceeecchheecccCCCeeEEEECCCC-cEEEEEeCCCCCCCCCCCCCEEEEe
|
| >4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0038 Score=70.30 Aligned_cols=59 Identities=29% Similarity=0.303 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCC
Q 002209 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (953)
Q Consensus 736 ~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (953)
.++.+.|+...++++.........+++++|.||||.+|+++-.++|+.|.|+++-+++.
T Consensus 105 ~eQALaD~a~fi~~~k~~~~~~~~pwI~~GGSY~G~LaAW~R~kYP~lv~ga~ASSApv 163 (472)
T 4ebb_A 105 VEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPV 163 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCCT
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCEEEEccCccchhhHHHHhhCCCeEEEEEecccce
Confidence 67889999999999988755556799999999999999999999999999999887753
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.051 Score=54.47 Aligned_cols=132 Identities=12% Similarity=0.105 Sum_probs=75.0
Q ss_pred ccceEEEEEc-CCceeE-eCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcc
Q 002209 312 ATTQLVLVSL-DGTVKE-IGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAE 388 (953)
Q Consensus 312 ~~~~l~~~~~-~g~~~~-l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~ 388 (953)
+.+.|..+|+ +|++.. +.-+..+......++|++|...... .+.++++|.++.+ .+.+....
T Consensus 41 g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~------------~~~v~v~D~~tl~~~~ti~~~~--- 105 (243)
T 3mbr_X 41 GRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR------------NHEGFVYDLATLTPRARFRYPG--- 105 (243)
T ss_dssp TSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------------SSEEEEEETTTTEEEEEEECSS---
T ss_pred CCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee------------CCEEEEEECCcCcEEEEEeCCC---
Confidence 5578999999 886543 3222333333445567777666422 3489999998544 34443311
Q ss_pred cCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe--ecccc---cCCeee
Q 002209 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLR---YGGISW 463 (953)
Q Consensus 389 ~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~--~~~~~---~~~~~~ 463 (953)
.....++||+.++.. ++.+.|+++|. .+....+.+. ..... .+.+.|
T Consensus 106 -------------~Gwglt~dg~~L~vS-------------dgs~~l~~iDp--~t~~~~~~I~V~~~g~~~~~lNeLe~ 157 (243)
T 3mbr_X 106 -------------EGWALTSDDSHLYMS-------------DGTAVIRKLDP--DTLQQVGSIKVTAGGRPLDNLNELEW 157 (243)
T ss_dssp -------------CCCEEEECSSCEEEE-------------CSSSEEEEECT--TTCCEEEEEECEETTEECCCEEEEEE
T ss_pred -------------CceEEeeCCCEEEEE-------------CCCCeEEEEeC--CCCeEEEEEEEccCCcccccceeeEE
Confidence 134566788766554 34568999984 3333333332 21111 223455
Q ss_pred ccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 464 CDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 464 SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
. +|+ |+...+.. . .|.++|+.++
T Consensus 158 ~-~G~-lyanvw~s-~--~I~vIDp~tG 180 (243)
T 3mbr_X 158 V-NGE-LLANVWLT-S--RIARIDPASG 180 (243)
T ss_dssp E-TTE-EEEEETTT-T--EEEEECTTTC
T ss_pred e-CCE-EEEEECCC-C--eEEEEECCCC
Confidence 4 565 55444433 2 7999999986
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.11 Score=57.81 Aligned_cols=134 Identities=10% Similarity=0.009 Sum_probs=73.6
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce--eecccCCCcc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIY 241 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~ 241 (953)
.|+.++..+ +....+. ........++|+|||+ |+++.. . .......++.++..++.. ..+.....
T Consensus 163 ~I~~id~~~----g~v~~~~--~~~~~P~giavd~dG~-lyVad~-~---~~~~~~gv~~~~~~~~~~~~~~~~~~~~-- 229 (433)
T 4hw6_A 163 AFRHVDFVN----QYVDIKT--TNIGQCADVNFTLNGD-MVVVDD-Q---SSDTNTGIYLFTRASGFTERLSLCNARG-- 229 (433)
T ss_dssp CEEEEETTT----TEEEEEC--CCCSCEEEEEECTTCC-EEEEEC-C---SCTTSEEEEEECGGGTTCCEEEEEECSS--
T ss_pred CEEEEECCC----CEEEEee--cCCCCccEEEECCCCC-EEEEcC-C---CCcccceEEEEECCCCeeccccccccCC--
Confidence 567777632 3333332 2223567889999999 655432 1 111233466666554332 11211111
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 321 (953)
...+++.|++..|+++. .....|++++.
T Consensus 230 ----P~giavd~~~G~lyv~d------------------------------------------------~~~~~V~~~d~ 257 (433)
T 4hw6_A 230 ----AKTCAVHPQNGKIYYTR------------------------------------------------YHHAMISSYDP 257 (433)
T ss_dssp ----BCCCEECTTTCCEEECB------------------------------------------------TTCSEEEEECT
T ss_pred ----CCEEEEeCCCCeEEEEE------------------------------------------------CCCCEEEEEEC
Confidence 34677888444566540 02357888888
Q ss_pred -CCce-eEeCC-C--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc
Q 002209 322 -DGTV-KEIGP-P--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (953)
Q Consensus 322 -~g~~-~~l~~-~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 374 (953)
+|.. +.+.. . .....++|+|||++|+++... ...|+.++.+
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~------------~~~I~~~~~d 303 (433)
T 4hw6_A 258 ATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG------------KHCIYRVDYN 303 (433)
T ss_dssp TTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT------------TTEEEEEEBC
T ss_pred CCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC------------CCEEEEEeCC
Confidence 6765 33321 1 222358999999988777622 2378887776
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 953 | ||||
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 8e-20 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 6e-18 | |
| d2gzsa1 | 265 | c.69.1.38 (A:41-305) Enterobactin and salmochelin | 1e-17 | |
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 4e-17 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 5e-14 | |
| d1wb4a1 | 273 | c.69.1.2 (A:803-1075) Feruloyl esterase domain of | 4e-13 | |
| d1l7aa_ | 318 | c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill | 2e-12 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 5e-12 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 7e-12 | |
| d1jjfa_ | 255 | c.69.1.2 (A:) Feruloyl esterase domain of the cell | 8e-11 | |
| d3c8da2 | 246 | c.69.1.2 (A:151-396) Enterochelin esterase, cataly | 1e-10 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 2e-10 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 2e-10 | |
| d1pv1a_ | 299 | c.69.1.34 (A:) Hypothetical esterase YJL068C {Bake | 5e-10 | |
| d1lnsa3 | 405 | c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopep | 1e-09 | |
| d2jbwa1 | 360 | c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine h | 1e-07 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 2e-06 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 7e-05 | |
| d1ju3a2 | 347 | c.69.1.21 (A:5-351) Bacterial cocaine esterase N-t | 2e-04 | |
| d1jjia_ | 311 | c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeogl | 2e-04 | |
| d1dina_ | 233 | c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas | 8e-04 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 0.001 | |
| d1thta_ | 302 | c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase | 0.002 | |
| d1k32a2 | 281 | b.68.7.1 (A:39-319) Tricorn protease N-terminal do | 0.002 | |
| d1vkha_ | 263 | c.69.1.32 (A:) Putative serine hydrolase Ydr428c { | 0.003 |
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.9 bits (216), Expect = 8e-20
Identities = 38/257 (14%), Positives = 72/257 (28%), Gaps = 19/257 (7%)
Query: 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL 707
D L + P + + P L + +F S ++
Sbjct: 11 DDYNLPMQILKPATFTDTT--HYPLLLVVDGT--------PGSQSVAEKFE--VSWETVM 58
Query: 708 WLARGFAILGGPTTPIIGEGDE---EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVG 764
+ G ++ +G + E R AV +++ +++AV
Sbjct: 59 VSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVF 118
Query: 765 GHSYGAFMTANLLAHAP----HLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEM 820
G YG +++ +L F CG A S + L F L + EM
Sbjct: 119 GKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDNRAYEM 178
Query: 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880
+ + + + + L A L I P ESH + +
Sbjct: 179 TKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSS 238
Query: 881 ESIMHVLWETDRWLQKY 897
H+ + +
Sbjct: 239 SLKQHLYRSIINFFVEC 255
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 82.6 bits (202), Expect = 6e-18
Identities = 46/263 (17%), Positives = 87/263 (33%), Gaps = 17/263 (6%)
Query: 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFP 698
+ + + + + + LPP +D SK P L Y G + + F
Sbjct: 3 SKKLDFIILNETKFWYQMILPPHFDKSK--KYPLLLDVYAG--------PCSQKADTVFR 52
Query: 699 RIGSTSVLLWLARGFA---ILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGV 755
+ + L G + + N R V A + + G
Sbjct: 53 --LNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGF 110
Query: 756 AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT--LTPFGFQNEDRTLWEA 813
+IA+ G SYG ++T+ +L +F CGIA + + + + E
Sbjct: 111 VDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPED 170
Query: 814 TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873
+ S MS + K + + + QS + AL G + + E
Sbjct: 171 NLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 230
Query: 874 SHGYAARESIMHVLWETDRWLQK 896
HG A+ + H+ ++++
Sbjct: 231 DHGIASSTAHQHIYTHMSHFIKQ 253
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Score = 82.0 bits (201), Expect = 1e-17
Identities = 30/258 (11%), Positives = 57/258 (22%), Gaps = 22/258 (8%)
Query: 640 ELIKYQRKDGV-QLSATLYLPPGYDPSKDGPLPCLFWSYPG-EFKSKDAAGQVRGSPNEF 697
+ DG +P P+ P L+ D + S
Sbjct: 14 SATSFDSVDGTRHYRVWTAVPNTTAPAS--GYPILYMLDGNAVMDRLDDELLKQLSEKTP 71
Query: 698 PRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQ--------LVACAEAAVEE 749
P I + L TP + + + +
Sbjct: 72 PVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPK 131
Query: 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRT 809
V + + + GHSYG + + + + S + R +
Sbjct: 132 VEQGLNIDRQRRGLWGHSYGGLFVLDSWLSSSYFRSY-YSASPSLGRGYDALLSRVTAVE 190
Query: 810 LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869
+ + ++ + + E + + LK G
Sbjct: 191 PLQFCTKHLAIM-------EGSATQGDNRETHAV--GVLSKIHTTLTILKDKGVNAVFWD 241
Query: 870 LPFESHGYAARESIMHVL 887
P HG S L
Sbjct: 242 FPNLGHGPMFNASFRQAL 259
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 81.3 bits (199), Expect = 4e-17
Identities = 36/290 (12%), Positives = 76/290 (26%), Gaps = 34/290 (11%)
Query: 628 PHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFW--------SYPG 679
L +++ + + G ++ L +P ++ LPC+ +P
Sbjct: 45 RMESH-LKTVEAYDVTFSGYRGQRIKGWLLVPKL----EEEKLPCVVQYIGYNGGRGFPH 99
Query: 680 EFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQL 739
++ + G + + + + + G + + ++
Sbjct: 100 DWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRV 159
Query: 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN---- 795
A AVE +I + G S G + + A + +
Sbjct: 160 FTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRRA 219
Query: 796 RTLTPFGFQNEDR--------TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTL 847
L E T A + K P L G DN
Sbjct: 220 VQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNI--CP 277
Query: 848 TMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
+N G + I P+ +H + + ++L+K
Sbjct: 278 PSTVFAAYNYYAGP---KEIRIYPYNNHEGGGSFQAVEQV----KFLKKL 320
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 71.4 bits (173), Expect = 5e-14
Identities = 32/278 (11%), Positives = 65/278 (23%), Gaps = 32/278 (11%)
Query: 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR 699
I Y KDG ++ + G DG P + Y G + +PN
Sbjct: 8 VQIFYPSKDGTKIPMFIVHKKGIKL--DGSHPAFLYGYGG--------FNISITPNYSVS 57
Query: 700 IGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPS 759
+ A + G AA + +
Sbjct: 58 RLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKR 117
Query: 760 KIAVGGHSYGAFMTANLLAHAPHLFCCGIA------------RSGAYNRTLTPFGFQNED 807
GG + G + C G T +
Sbjct: 118 LTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQH 177
Query: 808 RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNAL-------KG 860
S + + + +LL+ + D+ + S +F L +
Sbjct: 178 FEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVV--PLHSLKFIATLQYIVGRSRK 235
Query: 861 HGALCRLVILPFESHGYAARES-IMHVLWETDRWLQKY 897
+ + HG + ++ + + ++ +
Sbjct: 236 QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARC 273
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Score = 68.3 bits (165), Expect = 4e-13
Identities = 37/253 (14%), Positives = 63/253 (24%), Gaps = 9/253 (3%)
Query: 627 FPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDA 686
+ +P PQ + K Y +G S +YLP GYDP+K + + G
Sbjct: 17 YLNPCPQAGRIVK--ETYTGING-TKSLNVYLPYGYDPNK--KYNIFYLMHGGGENENTI 71
Query: 687 AGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAA 746
N L L G E + + A
Sbjct: 72 FSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQNFYQEFRQNVIPFVESKYSTYA 131
Query: 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE 806
+ A GG + G T ++ + + SG Y +P N
Sbjct: 132 ESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGNSPQDKANS 191
Query: 807 DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR 866
+ +A + I + + F
Sbjct: 192 IAEAINRSGLSKREYFVFAATG-SEDIAYANMNPQIEA---MKALPHFDYTSDFSKGNFY 247
Query: 867 LVILPFESHGYAA 879
++ P +H +
Sbjct: 248 FLVAPGATHWWGY 260
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Score = 67.1 bits (162), Expect = 2e-12
Identities = 42/291 (14%), Positives = 81/291 (27%), Gaps = 42/291 (14%)
Query: 628 PHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAA 687
P YP ++ + Y+ +++ +P +GP P + +
Sbjct: 46 PVDYP-ADGVKVYRLTYKSFGNARITGWYAVPDK-----EGPHPAIVKYHGYNASYDGEI 99
Query: 688 GQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE-------GDEEANDRFVEQLV 740
++ + G L RG + G G + + + +
Sbjct: 100 HEMV----NWALHGYA-TFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVY 154
Query: 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL-- 798
A A+E + ++I V G S G +T A + N
Sbjct: 155 LDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAI 214
Query: 799 ------------TPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGT 846
+ F T +A T A+++K P+L+ G D T
Sbjct: 215 DVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKV--T 272
Query: 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
+N L+ L + + H Y E + ++
Sbjct: 273 PPSTVFAAYNHLETKK---ELKVYRYFGHEYIP-----AFQTEKLAFFKQI 315
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 64.9 bits (156), Expect = 5e-12
Identities = 40/263 (15%), Positives = 75/263 (28%), Gaps = 23/263 (8%)
Query: 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR 699
L+ + DG ++ + P P + + G S +
Sbjct: 13 RLVWVESFDGSRVPTYVLESGR----APTPGPTVVLVHGG--------PFAEDSDSWDTF 60
Query: 700 IGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPS 759
L A ++ + + + R S
Sbjct: 61 A----ASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS 116
Query: 760 KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG-----AYNRTLTPFGFQNEDRTLWEAT 814
++ + G+SYG +MT L P LF G+A + ++ +
Sbjct: 117 ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSR 176
Query: 815 STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874
SP +++K+P+ L+H + D+ T R L G I+P
Sbjct: 177 EIMRSRSPINHVDRIKEPLALIHPQNDSR--TPLKPLLRLMGELLARGKTFEAHIIPDAG 234
Query: 875 HGYAARESIMHVLWETDRWLQKY 897
H E + +L +L
Sbjct: 235 HAINTMEDAVKILLPAVFFLATQ 257
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 65.5 bits (159), Expect = 7e-12
Identities = 20/130 (15%), Positives = 36/130 (27%), Gaps = 12/130 (9%)
Query: 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN--------RTLTPFGFQNEDRT 809
P+ ++V G + G +M A L +F G T + T
Sbjct: 10 PNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITT 69
Query: 810 LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG--HGALCRL 867
++ AN ++ I + G D ++ L + A
Sbjct: 70 PTANMKSWSGNQIASVANLGQRKIYMWTGSSDTT--VGPNVMNQLKAQLGNFDNSANVSY 127
Query: 868 VILPFESHGY 877
V H +
Sbjct: 128 VTTTGAVHTF 137
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Score = 61.2 bits (147), Expect = 8e-11
Identities = 36/270 (13%), Positives = 65/270 (24%), Gaps = 30/270 (11%)
Query: 625 TDFPHPYPQLASLQKELIKYQ-RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKS 683
+ + + Q I Y A +YLPPGY K L+ +
Sbjct: 8 SGYDQVRNGVPRGQVVNISYFSTATNSTRPARVYLPPGYSKDK--KYSVLYLLHGIGGSE 65
Query: 684 KDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACA 743
D + + P I +G E + L+
Sbjct: 66 NDWFEGGGRANVIADN-LIAEGKIKPLIIVTPNTNAAGPGIADGYENFTKDLLNSLIPYI 124
Query: 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGF 803
E+ A+ G S G + N+ F S A
Sbjct: 125 ES-----NYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAP--------- 170
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA 863
+ + +A + K + + G D+ G R +
Sbjct: 171 -------NTYPNERLFPDGGKAAREKLKLLFIACGTNDSLIG----FGQRVHEYCVANNI 219
Query: 864 LCRLVILPFESHGYAA-RESIMHVLWETDR 892
++ H + + + + L D
Sbjct: 220 NHVYWLIQGGGHDFNVWKPGLWNFLQMADE 249
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Score = 60.3 bits (145), Expect = 1e-10
Identities = 32/273 (11%), Positives = 62/273 (22%), Gaps = 38/273 (13%)
Query: 623 QITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFK 682
P + + E +K R+ ++ P +
Sbjct: 6 DCPQAPEIPAKEIIWKSERLKNSRR------VWIFTTGDVTA---EERPLAVLLDGEFWA 56
Query: 683 SKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVAC 742
V S ++ +L + N F +
Sbjct: 57 QSMPVWPVLTSLTHRQQLPPAVY---------VLIDAIDTTHRAHELPCNADFWLAVQQE 107
Query: 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 802
V+ + + V G S+G H P F C +++SG+Y
Sbjct: 108 LLPLVKVIAPFSDR-ADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRG-- 164
Query: 803 FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
+ +E + I+L G + + + + L
Sbjct: 165 --------GQQEGVLLEKLKAGEVSAEGLRIVLEAGIREPM---IMRANQALYAQLHPIK 213
Query: 863 ALCRLVILPFESHGYAA-RESIMHVLWETDRWL 894
+ H R +M L L
Sbjct: 214 ESIFWRQVD-GGHDALCWRGGLMQGL----IDL 241
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 61.7 bits (148), Expect = 2e-10
Identities = 25/205 (12%), Positives = 53/205 (25%), Gaps = 23/205 (11%)
Query: 626 DFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKD 685
F K + +DGV+L + LP G P + P
Sbjct: 12 PFVAADAS-NDYIKREVMIPMRDGVKLHTVIVLPKG-----AKNAPIVLTRTP----YDA 61
Query: 686 AAGQVRGSPNEFPRIGSTSVLLWLARGFAIL-------GGPTTPIIGEGDEEA-NDRFVE 737
+ R + + S +++ G+ + G + +
Sbjct: 62 SGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEV 121
Query: 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG----- 792
A ++ +V+ K+ + G SY F L + + S
Sbjct: 122 DHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGW 181
Query: 793 AYNRTLTPFGFQNEDRTLWEATSTY 817
+ F+ + + +
Sbjct: 182 MGDDWFNYGAFRQVNFDYFTGQLSK 206
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 61.7 bits (148), Expect = 2e-10
Identities = 22/175 (12%), Positives = 44/175 (25%), Gaps = 16/175 (9%)
Query: 630 PYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQ 689
P Q K + +DGV+L + +P P L P +
Sbjct: 19 PTDQQRDYIKREVMVPMRDGVKLYTVIVIPKN-----ARNAPILLTRTP---YNAKGRAN 70
Query: 690 VRGSPNEFPRIGSTSVLLWLARGFAIL--------GGPTTPIIGEGDEEANDRFVEQLVA 741
+ + +++ G+ + G ++ +
Sbjct: 71 RVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETT 130
Query: 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796
A V+ +V ++ + G SY F L S +
Sbjct: 131 DAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDG 185
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (143), Expect = 5e-10
Identities = 40/256 (15%), Positives = 80/256 (31%), Gaps = 29/256 (11%)
Query: 649 GVQLSATLYLPPGY---DPSKDGPLPCLFW------------SYPGEFKSKDAAGQVRGS 693
++ +YLP Y D ++ +P +F+ D G
Sbjct: 25 KTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVF 84
Query: 694 PNEFPRIGSTSVLLWLARGFAILGG---PTTPIIGEGDEEANDRFVEQLVACAEAAVEEV 750
P+ PR + + F G T + D ++L ++ +
Sbjct: 85 PDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKN 144
Query: 751 VRRGVAHPSKIAVGGHS---YGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED 807
+ +A+ GHS YGA L ++ + A + N + P+G +
Sbjct: 145 GDVKLDFLDNVAITGHSMGGYGAICGY-LKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFK 203
Query: 808 RTLWEATSTYVEMSPFMSANKLKKP----ILLVHGEEDNNSGTLTMQSDRFFNALK--GH 861
L E + + P + ++ IL+ G+ D ++ + A+K
Sbjct: 204 GYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLEEH-LKPELLLEAVKATSW 262
Query: 862 GALCRLVILPFESHGY 877
+ + H Y
Sbjct: 263 QDYVEIKKVHGFDHSY 278
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Score = 58.8 bits (141), Expect = 1e-09
Identities = 36/294 (12%), Positives = 71/294 (24%), Gaps = 63/294 (21%)
Query: 663 DPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAIL----- 716
+ + V +P F + S+ + RGFA +
Sbjct: 86 EEKTSHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGV 145
Query: 717 --GGPTTPIIGEGDEEANDRF--VEQLVACAEAAVEEVVRRGVAHP---SKIAVGGHSYG 769
++ ++ L A A + K+A+ G SY
Sbjct: 146 GTRSSDGFQTSGDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYL 205
Query: 770 AFMTANLLAHAPHLFCCGIARSGAYNRT-------------------------------- 797
M +A +G +
Sbjct: 206 GTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNL 265
Query: 798 --------------LTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNN 843
DR + + + + ++ +K+K +L+VHG +D N
Sbjct: 266 DGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWN 325
Query: 844 SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
Q+ F+ AL G + +H Y + + +
Sbjct: 326 VT--PEQAYNFWKALP-EGHAKHAFLHR-GAHIYMNSWQSIDFSETINAYFVAK 375
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 52.7 bits (125), Expect = 1e-07
Identities = 42/252 (16%), Positives = 68/252 (26%), Gaps = 41/252 (16%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
+ +P G GP P + + E ++ + L L RG A
Sbjct: 122 VRIPEG-----PGPHPAVIMLGGL-----------ESTKEESFQMEN----LVLDRGMAT 161
Query: 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775
P GE E A V+ + + I V G S G
Sbjct: 162 AT-FDGPGQGEMFEYKRIA--GDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALK 218
Query: 776 LLAHAPHLFCCGIARSGAYN---------RTLTPFGFQNEDRTLWEA-TSTYVEMSPFMS 825
A P I+ G + T + + ++ TL EA + +
Sbjct: 219 SAACEPR-LAACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDV 277
Query: 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH 885
+++ P ++HG D D + LV+ H
Sbjct: 278 LSQIACPTYILHGVHDE---VPLSFVDTVLELVPAEHL--NLVVEKDGDHCCHNLGIRPR 332
Query: 886 VLWETDRWLQKY 897
+ E WL
Sbjct: 333 L--EMADWLYDV 342
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 48.0 bits (113), Expect = 2e-06
Identities = 36/258 (13%), Positives = 71/258 (27%), Gaps = 34/258 (13%)
Query: 660 PGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSP-NEFPRIGSTSVLLWLARGFAILGG 718
S P L+ G D +G +P E+ SV++ + +
Sbjct: 24 KVQFQSGGANSPALYLLD-GLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSD 82
Query: 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA 778
P G+ + + P+ AV G S A L
Sbjct: 83 WYQPACGKAGCQTYK----WETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAI 138
Query: 779 HAPHLFCCGIARSGAYNRTLTP------------FGFQNEDRTLWEATSTYVEMSPFMSA 826
+ P F A SG + + G++ D + + P ++
Sbjct: 139 YHPQQFVYAGAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNV 198
Query: 827 NKLKK---PILLVHGEEDNNS------------GTLTMQSDRFFNALKGHGALCRLVILP 871
KL + + G + G + + +F +A G + P
Sbjct: 199 GKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFP 258
Query: 872 FE-SHGYAARESIMHVLW 888
+H + + ++ +
Sbjct: 259 DSGTHSWEYWGAQLNAMK 276
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.4 bits (101), Expect = 7e-05
Identities = 20/167 (11%), Positives = 41/167 (24%), Gaps = 15/167 (8%)
Query: 691 RGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEV 750
P+ + + + + LA + P D + + + +
Sbjct: 37 NAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMYTNWEQDGSKQWDTFLSAELPDWL 96
Query: 751 VRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP---------- 800
P A G + G + L A P F + SG + T
Sbjct: 97 AANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAGMQ 156
Query: 801 --FGFQNEDRTLWEATSTYVEMSPFMSANKLKK---PILLVHGEEDN 842
G + P++ A+ L + + +
Sbjct: 157 QFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPG 203
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 20/150 (13%)
Query: 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVL 706
+DGV+L+ LY P DGP+P L P ST+ L
Sbjct: 13 RDGVRLAVDLYRPDA-----DGPVPVLLVRNPY-----------DKFDVFAWSTQSTNWL 56
Query: 707 LWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGH 766
++ G+A++ G E A AE + ++ + + + G
Sbjct: 57 EFVRDGYAVV---IQDTRGLFASEGEFVPHVDDEADAEDTLSWILEQAWCDG-NVGMFGV 112
Query: 767 SYGAFMTANLLAHAPHLFCCGIARSGAYNR 796
SY + +
Sbjct: 113 SYLGVTQWQAAVSGVGGLKAIAPSMASADL 142
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 40/266 (15%), Positives = 64/266 (24%), Gaps = 51/266 (19%)
Query: 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR 711
+ +Y P L + + G F ST V
Sbjct: 68 IRVRVYQQ-------KPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVV------ 114
Query: 712 GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAF 771
+ E V + E + PSKI VGG S G
Sbjct: 115 ---------SVDYRLAPEHKFPAAVYDCYDATKWVAENAEELRID-PSKIFVGGDSAGGN 164
Query: 772 MTANLLAHAPHLFCCGIARS---------------------GAYNRTLTPFGFQNEDRTL 810
+ A + A I G + + +E
Sbjct: 165 LAAAVSIMARDSGEDFIKHQILIYPVVNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFS 224
Query: 811 WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 870
E S + + P L++ E D L + + F L+ G +V
Sbjct: 225 REEDKFNPLASVIFADLENLPPALIITAEYD----PLRDEGEVFGQMLRRAGVEASIVRY 280
Query: 871 PFESHGYAARESIMHVLWETDRWLQK 896
HG+ + VL + +
Sbjct: 281 RGVLHGFI---NYYPVLKAARDAINQ 303
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Score = 39.6 bits (91), Expect = 8e-04
Identities = 33/252 (13%), Positives = 59/252 (23%), Gaps = 55/252 (21%)
Query: 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCL-----FWSYPGEFKSK----DAAGQV 690
E I Q DG A + P P P + + + G
Sbjct: 4 EGISIQSYDGHTFGALVGSPAK------APAPVIVIAQEIFGVNAFMRETVSWLVDQGYA 57
Query: 691 RGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEV 750
P+ + R + L + + +E V EAA+
Sbjct: 58 AVCPDLYARQAPGTA----------LDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYA 107
Query: 751 VRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTL 810
+ + K+ + G+ G + + A
Sbjct: 108 RHQPYS-NGKVGLVGYCLGGALAFLVAAKGYVDRAV------------------------ 142
Query: 811 WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 870
++K P L G +D+ S + G L ++
Sbjct: 143 --GYYGVGLEKQLNKVPEVKHPALFHMGGQDHFV---PAPSRQLITEGFGANPLLQVHWY 197
Query: 871 PFESHGYAARES 882
H +A S
Sbjct: 198 EEAGHSFARTSS 209
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.5 bits (91), Expect = 0.001
Identities = 20/156 (12%), Positives = 36/156 (23%), Gaps = 27/156 (17%)
Query: 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-- 800
+ P+ A G S L A+ P F + SG N + +
Sbjct: 98 TREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWP 157
Query: 801 ----------FGFQNEDRTLWEATSTYVEMSPFMSANKLKK---PILLVHGEEDNNS--- 844
G+ + + P + +L I + G +
Sbjct: 158 TLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGG 217
Query: 845 ---------GTLTMQSDRFFNALKGHGALCRLVILP 871
G + F + G + P
Sbjct: 218 DNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFP 253
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Score = 39.1 bits (90), Expect = 0.002
Identities = 30/265 (11%), Positives = 54/265 (20%), Gaps = 54/265 (20%)
Query: 647 KDGVQLSATLYLPPGYDPSKDGPLPCL--FWSYPGEFKSKDAAGQVRGSPNEFPRIGSTS 704
+G +L P P K+ + F F G
Sbjct: 12 NNGQELHVWETPPKENVPFKNNTILIASGFARRMDHFAGLAEYLSTNG----------FH 61
Query: 705 VLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVG 764
V + + G ++ G DE L + I +
Sbjct: 62 VFRYDSLHH---VGLSS---GSIDEFTMTTGKNSLCTVYHWLQTK-------GTQNIGLI 108
Query: 765 GHSYGAFMTANLLAHAPHL--FCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYV---- 818
S A A + L + + GF + E +
Sbjct: 109 AASLSA-RVAYEVISDLELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGH 167
Query: 819 ------------------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860
S P++ D+ + ++
Sbjct: 168 KLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDW--VKQEEVYDMLAHIR- 224
Query: 861 HGALCRLVILPFESHGYAARESIMH 885
C+L L SH ++
Sbjct: 225 -TGHCKLYSLLGSSHDLGENLVVLR 248
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 38.6 bits (88), Expect = 0.002
Identities = 31/250 (12%), Positives = 66/250 (26%), Gaps = 24/250 (9%)
Query: 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDN------FVWV 252
G + F D +W D+ +G R + + + NA F +
Sbjct: 11 HGDRIIFVCCDD----------LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVM 60
Query: 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYA 312
S+L + G+ + + + + D + + + +
Sbjct: 61 RGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSS 120
Query: 313 TTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWT 372
T L V DG T + + + I ++ P+ G +
Sbjct: 121 MTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVN 180
Query: 373 TDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPR 432
+ + + + V G R ++ DG D + + T
Sbjct: 181 SGAFK-------KIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLR-KHTSF 232
Query: 433 DIIYTQQAEP 442
Y +
Sbjct: 233 TDYYPRHLNT 242
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.003
Identities = 12/137 (8%), Positives = 32/137 (23%), Gaps = 2/137 (1%)
Query: 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800
A + + G + ++
Sbjct: 113 VGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFT 172
Query: 801 FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860
+ ++E + V + ++ + LVH D Q++ + L+
Sbjct: 173 RLAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDEL--LTLRQTNCLISCLQD 230
Query: 861 HGALCRLVILPFESHGY 877
+ +L + H
Sbjct: 231 YQLSFKLYLDDLGLHND 247
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 953 | |||
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.96 | |
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 99.96 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.95 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.91 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.89 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.89 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.88 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.88 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.88 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.86 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.86 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.85 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.85 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.84 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.84 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.83 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.82 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.81 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.8 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.8 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.8 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.78 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.78 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.77 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.77 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.77 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.77 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.77 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.76 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.76 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.76 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.75 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.73 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.73 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.72 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.71 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.7 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.69 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.69 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.68 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.67 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.67 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.67 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.67 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.67 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.66 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.65 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.64 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.63 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.62 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.61 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.61 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.61 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.6 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.6 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.59 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.59 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.59 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.58 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.58 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.58 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.58 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.57 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.57 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.57 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.56 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.55 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.54 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.54 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.54 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.53 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.53 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.52 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.52 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.5 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.5 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.5 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.49 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.49 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 99.49 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.49 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.48 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.48 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.47 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.46 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.46 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.46 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.46 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.45 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.44 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.44 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.44 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.41 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.38 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.38 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.36 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.36 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.35 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 99.32 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.32 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.31 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.3 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.25 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.24 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.24 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.22 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.2 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.2 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 99.09 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.05 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 99.05 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 98.98 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.89 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.86 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.85 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 98.84 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 98.83 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.8 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.79 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 98.77 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 98.72 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.71 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.63 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.62 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.6 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 98.6 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.6 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.6 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 98.57 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 98.55 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.54 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.53 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.51 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.5 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.49 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.45 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.44 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.43 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.43 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.43 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.38 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.36 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.35 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.32 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.31 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.29 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.27 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.26 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.25 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 98.22 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 98.19 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.19 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.18 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.16 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.15 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.12 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 98.09 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.08 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.81 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.79 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.78 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 97.76 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.73 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.63 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 97.57 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 97.32 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.32 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.19 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.13 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 97.11 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.07 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 96.92 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 96.13 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.44 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 95.32 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 95.18 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.44 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 93.79 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.2 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 93.13 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 91.87 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 90.43 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 90.24 | |
| d1lgya_ | 265 | Triacylglycerol lipase {Rhizopus niveus [TaxId: 48 | 90.13 | |
| d1tiaa_ | 271 | Triacylglycerol lipase {Penicillium camembertii [T | 88.74 | |
| d1uwca_ | 261 | Feruloyl esterase A {Aspergillus niger [TaxId: 506 | 88.68 | |
| d1tiba_ | 269 | Triacylglycerol lipase {Thermomyces lanuginosus, f | 88.57 | |
| d3tgla_ | 265 | Triacylglycerol lipase {Rhizomucor miehei [TaxId: | 88.35 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 87.75 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 86.76 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 83.47 |
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.96 E-value=5.1e-29 Score=260.74 Aligned_cols=249 Identities=21% Similarity=0.262 Sum_probs=197.6
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
|+.|.+.|...+|.++.+.|++|++++++|+ +|+||++||||.... .. ..+. .......++++||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~lP~~~~~~kk--~P~iv~~HGGp~~~~------~~--~~~~--~~~~~~~~a~~g~~V~ 68 (258)
T d2bgra2 1 MPSKKLDFIILNETKFWYQMILPPHFDKSKK--YPLLLDVYAGPCSQK------AD--TVFR--LNWATYLASTENIIVA 68 (258)
T ss_dssp CCEEEEEEEEETTEEEEEEEEECTTCCTTSC--EEEEEECCCCTTCCC------CC--CCCC--CSHHHHHHHTTCCEEE
T ss_pred CCceeEEEEEeCCcEEEEEEEECCCcCCCCC--eeEEEEEcCCCCccc------CC--CccC--cCHHHHHHhcCCcEEE
Confidence 4678999999999999999999999987664 999999999853211 11 1111 1122335678999999
Q ss_pred EcCCCCCCCCCChhh---hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 717 GGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
.+++++..+.|..+. ...+....+.|+.++++++.+++.+|+++|+++|+|+||.+++.++..+|+++++++..++.
T Consensus 69 ~~d~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~ 148 (258)
T d2bgra2 69 SFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPV 148 (258)
T ss_dssp EECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCC
T ss_pred eecccccCCcchHHHHhhhhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeecc
Confidence 999988776665433 23345667888999999999999999999999999999999999999999999999988876
Q ss_pred CCCCCCCcCcc---cccchhhhhHHHHHhcCcccccCCCC-CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEE
Q 002209 794 YNRTLTPFGFQ---NEDRTLWEATSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869 (953)
Q Consensus 794 ~d~~~~~~~~~---~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~ 869 (953)
........... ......+...+.+...+++..+.+++ +|+|++||++|.+|| +.++.+++++|++.|+++++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~hG~~D~~Vp--~~~s~~~~~~l~~~g~~~~~~~ 226 (258)
T d2bgra2 149 SRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVH--FQQSAQISKALVDVGVDFQAMW 226 (258)
T ss_dssp CCGGGSBHHHHHHHHCCCSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSC--THHHHHHHHHHHHHTCCCEEEE
T ss_pred cccccccccccchhcccccchhhHHHhhcccccccccccccCChheeeecCCCccc--HHHHHHHHHHHHHCCCCEEEEE
Confidence 55322211100 01122344566778889998888875 799999999999999 9999999999999999999999
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 870 LPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 870 ~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
||+++|++...+....+.+.+.+||+++|.
T Consensus 227 ~~g~~H~~~~~~~~~~~~~~i~~fl~~~l~ 256 (258)
T d2bgra2 227 YTDEDHGIASSTAHQHIYTHMSHFIKQCFS 256 (258)
T ss_dssp ETTCCTTCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred ECCCCCCCCCCccHHHHHHHHHHHHHHHhc
Confidence 999999987777788899999999999984
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.96 E-value=8.7e-29 Score=259.14 Aligned_cols=242 Identities=19% Similarity=0.228 Sum_probs=196.6
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
...+.++|++.||.+|+++++.|++. +++.|+||++|||++.... ..| ......|+++||+|+
T Consensus 10 ~~~~~v~~~s~dG~~i~~~l~~p~~~----~~~~Pviv~~HGG~~~~~~---------~~~----~~~~~~la~~G~~v~ 72 (260)
T d2hu7a2 10 AGSRLVWVESFDGSRVPTYVLESGRA----PTPGPTVVLVHGGPFAEDS---------DSW----DTFAASLAAAGFHVV 72 (260)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTS----CSSEEEEEEECSSSSCCCC---------SSC----CHHHHHHHHHTCEEE
T ss_pred CceEEEEEECCCCCEEEEEEEeCCCC----CCCceEEEEECCCCccCCC---------ccc----cHHHHHHHhhccccc
Confidence 35688999999999999999999752 2468999999997643211 112 234677899999999
Q ss_pred EcCCCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 717 GGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
.+|+++..|+|.+.... .+....+.|+.++++|+.++. +.++++|+|+|+||.+++.+++.+|+.+++++..+|+
T Consensus 73 ~~d~r~~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~ 150 (260)
T d2hu7a2 73 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASV 150 (260)
T ss_dssp EECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCC
T ss_pred cceeeeccccccccccccccccchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccc
Confidence 99988877777764432 334577899999999999875 5679999999999999999999999999999999998
Q ss_pred CCCCCCC----cCcc-cccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002209 794 YNRTLTP----FGFQ-NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (953)
Q Consensus 794 ~d~~~~~----~~~~-~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (953)
.+..... ..+. ......+.+.+.+...+|+.+++++++|+||+||++|.+|| +.++.+++++|+..+++++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~liihG~~D~~vp--~~~~~~~~~~l~~~~~~~~~~ 228 (260)
T d2hu7a2 151 VDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTP--LKPLLRLMGELLARGKTFEAH 228 (260)
T ss_dssp CCHHHHHHTCCHHHHHHHHHHHCSCHHHHHHTCGGGCGGGCCSCEEEEEETTCSSSC--SHHHHHHHHHHHHTTCCEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccchhhcccccCCCceeeecccCceec--HHHHHHHHHHHHHCCCCeEEE
Confidence 7632110 0000 01122234567788899999999999999999999999999 999999999999999999999
Q ss_pred EeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 869 ILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 869 ~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
+||+++|++...++...+++.+.+||++|++
T Consensus 229 ~~~g~~H~~~~~e~~~~~~~~~~~fl~~hl~ 259 (260)
T d2hu7a2 229 IIPDAGHAINTMEDAVKILLPAVFFLATQRE 259 (260)
T ss_dssp EETTCCSSCCBHHHHHHHHHHHHHHHHHHHH
T ss_pred EECcCCCCCCChHhHHHHHHHHHHHHHHHhc
Confidence 9999999998778888999999999999985
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=7e-29 Score=259.62 Aligned_cols=239 Identities=16% Similarity=0.170 Sum_probs=180.4
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.||.+|++++++|++++.+++ +|+||++||||+... ..+.|.. ......|+++||+|+++|++|+.++
T Consensus 10 ~dg~~l~~~l~~P~~~~~~~k--~Pviv~~HGGp~~~~--------~~~~~~~--~~~~~~la~~G~~vv~~d~rGs~~~ 77 (258)
T d1xfda2 10 IDDYNLPMQILKPATFTDTTH--YPLLLVVDGTPGSQS--------VAEKFEV--SWETVMVSSHGAVVVKCDGRGSGFQ 77 (258)
T ss_dssp ETTEEECCBEEBCSSCCSSSC--EEEEEECCCCTTCCC--------CCCCCCC--SHHHHHHHTTCCEEECCCCTTCSSS
T ss_pred eCCeEEEEEEEECCCcCCCCc--eeEEEEEcCCccccC--------cCCCcCc--chHHHHHhcCCcEEEEecccccccc
Confidence 499999999999999877664 999999999864211 1112221 1234568899999999999887777
Q ss_pred CChhhh---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC----cccEEEEcccCCCCCCC
Q 002209 727 GDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGIARSGAYNRTLT 799 (953)
Q Consensus 727 G~~~~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~~~~d~~~~ 799 (953)
|..+.. .+++...+.|++++++++.+++.+|++||+++|+|+||++|++++...++ .+++.+...++......
T Consensus 78 g~~~~~~~~~~~g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T d1xfda2 78 GTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLY 157 (258)
T ss_dssp HHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSS
T ss_pred chhHhhhhhccchhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeecc
Confidence 765332 33455779999999999999999999999999999999999998876654 57777777776543221
Q ss_pred CcCc-ccccchhhhhHHHHHhcCcccccCCC-CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002209 800 PFGF-QNEDRTLWEATSTYVEMSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (953)
Q Consensus 800 ~~~~-~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (953)
.... .........+...+...++...+.++ +.|+|++||+.|.+|| ++++.+++++|++.++++++++||+++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~p~Li~hG~~D~~vp--~~~s~~~~~~l~~~~~~~~~~~~p~~~H~~ 235 (258)
T d1xfda2 158 ASAFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIH--FQHTAELITQLIRGKANYSLQIYPDESHYF 235 (258)
T ss_dssp BHHHHHHHHCCCSSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSC--HHHHHHHHHHHHHTTCCCEEEEETTCCSSC
T ss_pred ccccccccccccccchHHhhccchhhhhhhhhcccccccccCCCCCcC--HHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Confidence 1000 00001111122334455666666665 6899999999999999 999999999999999999999999999998
Q ss_pred CCcccHHHHHHHHHHHHHHhcc
Q 002209 878 AARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 878 ~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
........+++.+++||+++++
T Consensus 236 ~~~~~~~~~~~~~~~f~~~~~~ 257 (258)
T d1xfda2 236 TSSSLKQHLYRSIINFFVECFR 257 (258)
T ss_dssp CCHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCcCHHHHHHHHHHHHHHhhC
Confidence 7766777888999999999885
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.91 E-value=8.5e-23 Score=215.70 Aligned_cols=249 Identities=15% Similarity=0.187 Sum_probs=179.0
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
+++|+|+|++.||.+|+++|++|+++++++ ++|+||++|||++..+.. .+.......++..|++++
T Consensus 5 y~~e~v~~~s~DG~~i~~~l~~P~~~~~~~--~~P~iv~~HGG~~~~~~~------------~~~~~~~~~~~~~~~~~~ 70 (280)
T d1qfma2 5 YQTVQIFYPSKDGTKIPMFIVHKKGIKLDG--SHPAFLYGYGGFNISITP------------NYSVSRLIFVRHMGGVLA 70 (280)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTCCCSS--CSCEEEECCCCTTCCCCC------------CCCHHHHHHHHHHCCEEE
T ss_pred CEEEEEEEECCCCCEEEEEEEEcCCCCCCC--CeEEEEEECCCCcccCCC------------Ccchhhhhhhcccceeee
Confidence 357889999999999999999999887655 599999999987543321 111223445567788888
Q ss_pred EcCCCCCCCCCChhh---hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 717 GGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
...+++....+.... ..........+...++.+...+...+...++++|+|.||.++..++...++.+++++...++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~ 150 (280)
T d1qfma2 71 VANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGV 150 (280)
T ss_dssp EECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCC
T ss_pred ccccccccccchhhhhcccccccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccc
Confidence 866654444333221 12334556677777777777787788899999999999999999999999999999999988
Q ss_pred CCCCCCCcC-ccc------ccchhhhhHHHHHhcCcc------cccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHH-
Q 002209 794 YNRTLTPFG-FQN------EDRTLWEATSTYVEMSPF------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK- 859 (953)
Q Consensus 794 ~d~~~~~~~-~~~------~~~~~~~~~~~~~~~sp~------~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~- 859 (953)
.+....... ... .....+.....+...+|. ..+.....|+|++||++|.+|| +.++++++++|+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~pP~LiihG~~D~~Vp--~~~s~~l~~aL~~ 228 (280)
T d1qfma2 151 MDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVV--PLHSLKFIATLQY 228 (280)
T ss_dssp CCTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSC--THHHHHHHHHHHH
T ss_pred cchhhhccccccccceecccCCCcccccccccccccccccchhhhcccCCCceEEeecccCCCCC--HHHHHHHHHHHHH
Confidence 775332110 000 111122233333444444 4444445699999999999999 999999999995
Q ss_pred ------hCCCcEEEEEeCCCCccCCCccc-HHHHHHHHHHHHHHhccCC
Q 002209 860 ------GHGALCRLVILPFESHGYAARES-IMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 860 ------~~g~~~~~~~~~~~~H~~~~~~~-~~~~~~~i~~fl~~~l~~~ 901 (953)
+.++++++++||++||++....+ ..+.+.++++||++||+..
T Consensus 229 ~g~~~~~~~~~~~l~~~~~~gHgf~~~~~~~~~~~~~~~~fl~k~L~~~ 277 (280)
T d1qfma2 229 IVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNID 277 (280)
T ss_dssp HTTTSTTCCSCEEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhhcCCCcEEEEEeCcCCCCCCCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 44789999999999999864433 3466678999999999864
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.89 E-value=2.2e-22 Score=219.57 Aligned_cols=235 Identities=19% Similarity=0.159 Sum_probs=168.4
Q ss_pred CCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcE
Q 002209 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (953)
Q Consensus 635 ~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (953)
.....|+++++. +|..|+++++.|++ .++.|+||++||... ...........|+++||+
T Consensus 102 ~~~~~e~v~ip~-dg~~l~g~l~~P~~-----~~~~P~Vi~~hG~~~---------------~~e~~~~~~~~l~~~G~~ 160 (360)
T d2jbwa1 102 LSPPAERHELVV-DGIPMPVYVRIPEG-----PGPHPAVIMLGGLES---------------TKEESFQMENLVLDRGMA 160 (360)
T ss_dssp SSSCEEEEEEEE-TTEEEEEEEECCSS-----SCCEEEEEEECCSSC---------------CTTTTHHHHHHHHHTTCE
T ss_pred CCCCeEEeecCc-CCcccceEEEecCC-----CCCceEEEEeCCCCc---------------cHHHHHHHHHHHHhcCCE
Confidence 345678899985 78999999999976 346999999999421 111122456678999999
Q ss_pred EEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCC
Q 002209 715 ILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (953)
Q Consensus 715 V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (953)
|+.+|+ +|+|.+............++..+++++..+..+|++||+|+|+||||++++.+++..| +++++|+.+|+.
T Consensus 161 vl~~D~---~G~G~s~~~~~~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~p-ri~a~V~~~~~~ 236 (360)
T d2jbwa1 161 TATFDG---PGQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP-RLAACISWGGFS 236 (360)
T ss_dssp EEEECC---TTSGGGTTTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCS
T ss_pred EEEEcc---ccccccCccccccccHHHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCC-CcceEEEEcccc
Confidence 999554 5777664332221223345567788999999999999999999999999999999996 699999999987
Q ss_pred CCCCCCcCcccc---------cchhhh-hHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc
Q 002209 795 NRTLTPFGFQNE---------DRTLWE-ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (953)
Q Consensus 795 d~~~~~~~~~~~---------~~~~~~-~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (953)
+........... .....+ ........+....+.+|++|+|++||++|. || +.++.++++++... +
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-vp--~~~~~~l~~~~~~~--~ 311 (360)
T d2jbwa1 237 DLDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VP--LSFVDTVLELVPAE--H 311 (360)
T ss_dssp CSTTGGGSCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SC--THHHHHHHHHSCGG--G
T ss_pred cHHHHhhhhhhhhHHHHHhccCCchHHHHHHHHhhcchhhhHhhCCCCEEEEEeCCCC-cC--HHHHHHHHHhcCCC--C
Confidence 743221110000 000000 112234456667788999999999999997 68 89999999987543 5
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccCC
Q 002209 865 CRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 865 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (953)
++++++++++|... .........+.+||.++|...
T Consensus 312 ~~l~~~~~g~H~~~--~~~~~~~~~i~dWl~~~L~~g 346 (360)
T d2jbwa1 312 LNLVVEKDGDHCCH--NLGIRPRLEMADWLYDVLVAG 346 (360)
T ss_dssp EEEEEETTCCGGGG--GGTTHHHHHHHHHHHHHHTSS
T ss_pred eEEEEECCCCcCCC--cChHHHHHHHHHHHHHHhccC
Confidence 78889999999653 334566778999999998643
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=1.5e-22 Score=218.70 Aligned_cols=236 Identities=15% Similarity=0.112 Sum_probs=169.3
Q ss_pred cCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCc
Q 002209 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (953)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (953)
...++.+.++|++.||.+|++++++|++. .+++|+||++||++.... + ......|+++||
T Consensus 50 ~~~~~~~~v~~~s~dG~~l~~~l~~P~~~----~~~~P~Vv~~hG~~~~~~------------~----~~~~~~~a~~G~ 109 (322)
T d1vlqa_ 50 LKTVEAYDVTFSGYRGQRIKGWLLVPKLE----EEKLPCVVQYIGYNGGRG------------F----PHDWLFWPSMGY 109 (322)
T ss_dssp CSSEEEEEEEEECGGGCEEEEEEEEECCS----CSSEEEEEECCCTTCCCC------------C----GGGGCHHHHTTC
T ss_pred CCCeEEEEEEEECCCCcEEEEEEEeccCC----CCCccEEEEecCCCCCcC------------c----HHHHHHHHhCCC
Confidence 44456788999999999999999999763 235999999999642210 1 122346899999
Q ss_pred EEEEcCCCCCCCCCCh------------------------hhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChH
Q 002209 714 AILGGPTTPIIGEGDE------------------------EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYG 769 (953)
Q Consensus 714 ~V~~~~~~~~~G~G~~------------------------~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~G 769 (953)
+|+.+|+++..+.+.. .....+....+.|+..+++++..++.+|++|++++|+|+|
T Consensus 110 ~v~~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~G 189 (322)
T d1vlqa_ 110 ICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQG 189 (322)
T ss_dssp EEEEECCTTCCCSSSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHH
T ss_pred EEEEeeccccCCCCCCccccccccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccc
Confidence 9999776544221111 0011234566889999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcccEEEEcccCCCCCCCC------cCcccc-------cchhhhhHHHHHhcCcccccCCCCCcEEEE
Q 002209 770 AFMTANLLAHAPHLFCCGIARSGAYNRTLTP------FGFQNE-------DRTLWEATSTYVEMSPFMSANKLKKPILLV 836 (953)
Q Consensus 770 G~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~------~~~~~~-------~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~ 836 (953)
|++++.+++..| +|+++++.++..+..... ..+... ........+.+..++|+.++.++++|+|++
T Consensus 190 G~~a~~~~~~~~-~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~i~~P~Lv~ 268 (322)
T d1vlqa_ 190 GGIALAVSALSK-KAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFS 268 (322)
T ss_dssp HHHHHHHHHHCS-SCCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEE
T ss_pred hHHHHHHHhcCC-CccEEEEeCCccccHHHHHhhccccchhhHHhhhhcCcchhhhHHHHhhhhhHHHHHhcCCCCEEEE
Confidence 999999999885 689998887765421100 000000 000011223445578999999999999999
Q ss_pred EeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 837 HGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 837 ~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
||++|.+|| ++++.++++++ +.++++++||+++|.... ....+..++||+++|+
T Consensus 269 ~G~~D~~vp--~~~~~~~~~~~---~~~~~l~~~p~~~H~~~~----~~~~~~~~~~l~~~l~ 322 (322)
T d1vlqa_ 269 VGLMDNICP--PSTVFAAYNYY---AGPKEIRIYPYNNHEGGG----SFQAVEQVKFLKKLFE 322 (322)
T ss_dssp EETTCSSSC--HHHHHHHHHHC---CSSEEEEEETTCCTTTTH----HHHHHHHHHHHHHHHC
T ss_pred EeCCCCCcC--HHHHHHHHHHC---CCCeEEEEECCCCCCCcc----ccCHHHHHHHHHHHhC
Confidence 999999999 99888777765 557999999999997632 2333556899999873
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.88 E-value=3.4e-22 Score=218.71 Aligned_cols=336 Identities=14% Similarity=0.094 Sum_probs=210.2
Q ss_pred CCCceecC-CCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 111 LPALSFSP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 111 ~~~~~~SP-DG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.....||| ||+++||.+.. +|++|++.. +..+++ +++.
T Consensus 5 ~~~~~fSP~dG~~~a~~~~g----------------------------------~v~v~d~~~----~~~~~~---~~~~ 43 (360)
T d1k32a3 5 KFAEDFSPLDGDLIAFVSRG----------------------------------QAFIQDVSG----TYVLKV---PEPL 43 (360)
T ss_dssp GGEEEEEECGGGCEEEEETT----------------------------------EEEEECTTS----SBEEEC---SCCS
T ss_pred hhcccccCCCCCEEEEEECC----------------------------------eEEEEECCC----CcEEEc---cCCC
Confidence 34567999 99999999874 789999843 455554 3445
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..++|||||++|++.... ....|+++|+++++.++++..... +..++|+|||+.|++..
T Consensus 44 ~v~~~~~spDg~~l~~~~~~-------~g~~v~v~d~~~~~~~~~~~~~~~-----v~~~~~spdg~~l~~~~------- 104 (360)
T d1k32a3 44 RIRYVRRGGDTKVAFIHGTR-------EGDFLGIYDYRTGKAEKFEENLGN-----VFAMGVDRNGKFAVVAN------- 104 (360)
T ss_dssp CEEEEEECSSSEEEEEEEET-------TEEEEEEEETTTCCEEECCCCCCS-----EEEEEECTTSSEEEEEE-------
T ss_pred CEEEEEECCCCCEEEEEEcC-------CCCEEEEEECCCCcEEEeeCCCce-----EEeeeecccccccceec-------
Confidence 78999999999999997742 245799999999999988765543 67899999999999771
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC--CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDG~~l 346 (953)
....++.+++ +++...+... ..+..++|||||++|
T Consensus 105 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 142 (360)
T d1k32a3 105 ------------------------------------------DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFI 142 (360)
T ss_dssp ------------------------------------------TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEE
T ss_pred ------------------------------------------cccccccccccccceeeeeecccccccchhhccceeee
Confidence 3356888888 7765555433 667889999999999
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (953)
++......... .......+++|++.+++...++.... ....+.|||||+.|++...
T Consensus 143 a~~~~~~~~~~---~~~~~~~~~v~d~~~~~~~~~~~~~~-------------~~~~~~~spdg~~l~~~s~-------- 198 (360)
T d1k32a3 143 AYGFPLKHGET---DGYVMQAIHVYDMEGRKIFAATTENS-------------HDYAPAFDADSKNLYYLSY-------- 198 (360)
T ss_dssp EEEEEECSSTT---CSCCEEEEEEEETTTTEEEECSCSSS-------------BEEEEEECTTSCEEEEEES--------
T ss_pred eeeccccccce---eeccccceeeeccccCceeeeccccc-------------ccccccccCCCCEEEEEeC--------
Confidence 99876543211 11223478899999888777766432 2246889999999888721
Q ss_pred cccccCCeEEEEecCC-----CCCCCceEEeecccccCCeeeccCCceEEEEEecc-cCceEEEEEcCCCCCCCcEEeec
Q 002209 427 VEVTPRDIIYTQQAEP-----VQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK-TRRTRTWVISPGSKDVAPRILFD 500 (953)
Q Consensus 427 ~~~~~~~~l~~~d~~~-----~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~l~~~d~~~~~~~~~~~~~ 500 (953)
+..+.+++... ..+.+...+.........+.|++|++.++...... ....+++.++..++ ....+..
T Consensus 199 -----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 271 (360)
T d1k32a3 199 -----RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG--DYRMIIP 271 (360)
T ss_dssp -----CCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB--CEEEEEE
T ss_pred -----CCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcC--ceeEeee
Confidence 22222232100 01111222333334445678999998766443211 12235666666553 2222221
Q ss_pred CCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeE
Q 002209 501 RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTV 580 (953)
Q Consensus 501 ~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~ 580 (953)
....... +.+..++....+.. . ......|++||+++++...+... +.
T Consensus 272 ~~~~~~~-------~~~~~~~~~~~~~~--------------~----~~~~~~i~~~d~~~~~~~~~~~~--------v~ 318 (360)
T d1k32a3 272 LESSILI-------YSVPVHGEFAAYYQ--------------G----APEKGVLLKYDVKTRKVTEVKNN--------LT 318 (360)
T ss_dssp CSSEEEE-------EECCCCCSHHHHHH--------------C----CCCCEEEEEEETTTCCEEEEEEE--------EE
T ss_pred cCCCceE-------EEEEecCCCeeEEE--------------e----cCCCCEEEEEECCCCeEEEecCC--------cC
Confidence 1100000 11222221111110 0 11234699999999887655421 11
Q ss_pred eeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeE
Q 002209 581 ALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (953)
Q Consensus 581 ~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~ 623 (953)
..+|||||++|++.... ..|++++..+|+...
T Consensus 319 -------~~~~SpDG~~l~~~~~D----g~i~v~d~~~~~~~~ 350 (360)
T d1k32a3 319 -------DLRLSADRKTVMVRKDD----GKIYTFPLEKPEDER 350 (360)
T ss_dssp -------EEEECTTSCEEEEEETT----SCEEEEESSCTTSCE
T ss_pred -------EEEECCCCCEEEEEECC----CeEEEEECCCCCcce
Confidence 24799999999876554 359999998876544
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=4.5e-22 Score=214.35 Aligned_cols=232 Identities=16% Similarity=0.151 Sum_probs=169.7
Q ss_pred cCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCc
Q 002209 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (953)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (953)
.+...++.++|++.||.+|++++++|++ .++.|+||++||+.... ......+..|+++||
T Consensus 51 ~~~~~~~~v~~~~~dg~~i~~~l~~P~~-----~~~~P~vv~~HG~~~~~---------------~~~~~~~~~la~~Gy 110 (318)
T d1l7aa_ 51 ADGVKVYRLTYKSFGNARITGWYAVPDK-----EGPHPAIVKYHGYNASY---------------DGEIHEMVNWALHGY 110 (318)
T ss_dssp CSSEEEEEEEEEEGGGEEEEEEEEEESS-----CSCEEEEEEECCTTCCS---------------GGGHHHHHHHHHTTC
T ss_pred CCCeEEEEEEEECCCCcEEEEEEEecCC-----CCCceEEEEecCCCCCc---------------cchHHHHHHHHHCCC
Confidence 3455678999999999999999999986 45699999999963211 112345667899999
Q ss_pred EEEEcCCCCCCCCCChhhh--------------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHH
Q 002209 714 AILGGPTTPIIGEGDEEAN--------------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMT 773 (953)
Q Consensus 714 ~V~~~~~~~~~G~G~~~~~--------------------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a 773 (953)
+|+++|++ |+|.+... .......+.|...+++++..++.+|+++++++|+|+||.++
T Consensus 111 ~vi~~D~r---G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~ 187 (318)
T d1l7aa_ 111 ATFGMLVR---GQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLT 187 (318)
T ss_dssp EEEEECCT---TTSSSCCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHH
T ss_pred EEEEEeeC---CCCCCCCCcccchhhhhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHH
Confidence 99996664 44444211 11244567899999999999999999999999999999999
Q ss_pred HHHHHhCCCcccEEEEcccCCCCCCC------CcCcc------cccchhhh---hHHHHHhcCcccccCCCCCcEEEEEe
Q 002209 774 ANLLAHAPHLFCCGIARSGAYNRTLT------PFGFQ------NEDRTLWE---ATSTYVEMSPFMSANKLKKPILLVHG 838 (953)
Q Consensus 774 ~~~a~~~p~~~~a~v~~~~~~d~~~~------~~~~~------~~~~~~~~---~~~~~~~~sp~~~~~~i~~P~Li~~G 838 (953)
+.++...+ .++++++..|....... ..... ......+. ........++...+.++++|+||+||
T Consensus 188 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G 266 (318)
T d1l7aa_ 188 IAAAALSD-IPKAAVADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIG 266 (318)
T ss_dssp HHHHHHCS-CCSEEEEESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEE
T ss_pred HHHhhcCc-ccceEEEeccccccHHHHhhcccccccchhhhhhhccccccccccccccccccccccccccCCCCEEEEEE
Confidence 99999995 47777766664331100 00000 00011111 12223345667788899999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
++|.+|| ++++.++++++ +.++++++||+++|.+. .+..+++++||++||+
T Consensus 267 ~~D~~vp--~~~~~~~~~~l---~~~~~l~~~~~~gH~~~-----~~~~~~~~~fl~~~Lk 317 (318)
T d1l7aa_ 267 LIDKVTP--PSTVFAAYNHL---ETKKELKVYRYFGHEYI-----PAFQTEKLAFFKQILK 317 (318)
T ss_dssp TTCSSSC--HHHHHHHHHHC---CSSEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHC
T ss_pred CCCCCcC--HHHHHHHHHHc---CCCcEEEEECCCCCCCc-----HHHHHHHHHHHHHhCC
Confidence 9999999 99999998876 45689999999999763 4567889999999996
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1e-20 Score=213.36 Aligned_cols=356 Identities=10% Similarity=0.019 Sum_probs=204.8
Q ss_pred ceEEEEccCCCCCCceeeeecCCC-CC-cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPD-GA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~-~~-~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (953)
+|+++++.+ ++.+.|..... .. .+..+.|||||++|+|..+....-..+....+|++|+.+++.++|+......
T Consensus 38 ~i~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~ 113 (465)
T d1xfda1 38 TVRLWNVET----NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN 113 (465)
T ss_dssp CEEEBCGGG----CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS
T ss_pred cEEEEECCC----CCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCc
Confidence 678888864 33333321211 11 5667889999999999875432222345678999999999998886543311
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 321 (953)
..+..+.|||||+.|+|+ ...+||.++.
T Consensus 114 --~~l~~~~wSPDG~~iafv--------------------------------------------------~~~nl~~~~~ 141 (465)
T d1xfda1 114 --AKLQYAGWGPKGQQLIFI--------------------------------------------------FENNIYYCAH 141 (465)
T ss_dssp --CCCSBCCBCSSTTCEEEE--------------------------------------------------ETTEEEEESS
T ss_pred --cccceeeeccCCceEEEE--------------------------------------------------ecceEEEEec
Confidence 114568999999999998 3356888887
Q ss_pred -CCceeEeCCC--Cc------------------ccccccCCCCcEEEEEEecCCcc--ccc----------------cCC
Q 002209 322 -DGTVKEIGPP--AV------------------YTSLDPSPDEKYILISSIHRPYS--FIV----------------PCG 362 (953)
Q Consensus 322 -~g~~~~l~~~--~~------------------~~~~~~SpDG~~l~~~~~~~~~~--~~~----------------~~~ 362 (953)
++...+++.. .. ...+.|||||++|||.+.+...- +.. |..
T Consensus 142 ~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~ 221 (465)
T d1xfda1 142 VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA 221 (465)
T ss_dssp SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred CCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecccc
Confidence 6666666543 11 12456999999999998654210 000 001
Q ss_pred CC---CcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEe
Q 002209 363 RF---PRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQ 439 (953)
Q Consensus 363 ~~---~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d 439 (953)
.. ...++++|++++..+.+...+.... ........+.|+||++.++++.++. .....++++|
T Consensus 222 G~~np~~~l~v~d~~~~~~~~~~~~~~~~~------~~~~y~~~~~W~~d~~~~~~~~nR~---------q~~~~i~~~d 286 (465)
T d1xfda1 222 GSENPSISLHVIGLNGPTHDLEMMPPDDPR------MREYYITMVKWATSTKVAVTWLNRA---------QNVSILTLCD 286 (465)
T ss_dssp TSCCCEEEEEEEESSSSCCCEECCCCCCGG------GSSEEEEEEEESSSSEEEEEEEETT---------SCEEEEEEEE
T ss_pred CCCCCceeEEEEecCCCcEEEEEeccCcCc------cccceeeeeEEcCCCeEEEEEEccc---------cccceEEEEc
Confidence 11 1257778887554333222111000 0011234688999998555554433 2234678888
Q ss_pred cCCCCCCCceEEeec--cc----ccCCeeeccCCceEEEEEe-cccCceEEEEEcCCCC-----CCCcEEeecCCCcccc
Q 002209 440 AEPVQGEGPEILHKL--DL----RYGGISWCDDSLALVYESW-YKTRRTRTWVISPGSK-----DVAPRILFDRSSEDVY 507 (953)
Q Consensus 440 ~~~~~g~~~~~l~~~--~~----~~~~~~~SpDg~~l~~~~~-~~~~~~~l~~~d~~~~-----~~~~~~~~~~~~~~~~ 507 (953)
+ .+++.+.+... +. ....+.|++||+.++|... ...+..++|.+.+.+. ....+.++.......
T Consensus 287 ~---~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~- 362 (465)
T d1xfda1 287 A---TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT- 362 (465)
T ss_dssp T---TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE-
T ss_pred C---CCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEE-
Confidence 5 55665555322 21 1245899999998877532 2223345666643221 012233443322210
Q ss_pred CCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEE-EeccCcccceeeeEeeccCC
Q 002209 508 SDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKER-IWESDKEKYYETTVALMSDQ 586 (953)
Q Consensus 508 ~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~ 586 (953)
. .+.|..+++.|+|.. +...| ...|||.++++++..++ |+..... . ...
T Consensus 363 ~-----i~~~d~~~~~vyF~a--------------~~~~p--~~~hly~v~l~g~~~~~~lt~~~~~----~-----~~~ 412 (465)
T d1xfda1 363 K-----ILAYDEKGNKIYFLS--------------TEDLP--RRRQLYSANTVGNFNRQCLSCDLVE----N-----CTY 412 (465)
T ss_dssp E-----EEEEETTTTEEEEEE--------------SSSCT--TCCEEEEECSSTTCCCBCSSTTSSS----S-----CCC
T ss_pred E-----EEEEcCCCCEEEEEE--------------eCCCC--CceEEEEEECCCCCcceeeccccCC----C-----CCE
Confidence 0 034555555555544 43322 24589999998775544 4432211 0 112
Q ss_pred ccccccccCCEEEEEEecCCCCceEEEEECCCCCee-EEe
Q 002209 587 TEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC-QIT 625 (953)
Q Consensus 587 ~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~-~Lt 625 (953)
+..+||||+++++..++++..|. +.+++..+++.. .|+
T Consensus 413 ~~~~~S~~~~y~v~~~s~~~~P~-~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 413 FSASFSHSMDFFLLKCEGPGVPM-VTVHNTTDKKKMFDLE 451 (465)
T ss_dssp CEEEECTTSSEEEEECCSSSSCC-EEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCEEEEEeecCCCCe-EEEEECCCCCEEEEEc
Confidence 34679999999999999998776 556666666654 444
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.86 E-value=5e-20 Score=209.98 Aligned_cols=359 Identities=11% Similarity=-0.002 Sum_probs=207.3
Q ss_pred ceEEEEccCCCCCCceeeee-cC--C-CCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCC
Q 002209 164 GIGIHQLFPDGKLGQEIEIQ-GF--P-DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD 239 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~-~~--~-~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 239 (953)
+|++||+.+ ++.+.+. .. . ....+..+.|||||++|||..+.......+....+|++|+++++..+++..+.
T Consensus 37 ~~~~~~~~t----~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~ 112 (470)
T d2bgra1 37 NILVFNAEY----GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPN 112 (470)
T ss_dssp CEEEEETTT----CCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCT
T ss_pred cEEEEECCC----CCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCc
Confidence 679999854 4443332 11 1 12257889999999999998764433334557789999999999998887766
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEE
Q 002209 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (953)
Q Consensus 240 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 319 (953)
. +..+.|||||+.|+|. ...+||++
T Consensus 113 ~-----~~~~~~SPDG~~ia~~--------------------------------------------------~~~~l~~~ 137 (470)
T d2bgra1 113 N-----TQWVTWSPVGHKLAYV--------------------------------------------------WNNDIYVK 137 (470)
T ss_dssp T-----EEEEEECSSTTCEEEE--------------------------------------------------ETTEEEEE
T ss_pred c-----ccccccccCcceeeEe--------------------------------------------------ecccceEE
Confidence 4 6689999999999987 23467788
Q ss_pred Ec-CCceeEeCCC--------------------CcccccccCCCCcEEEEEEecCCccc--cc-----------------
Q 002209 320 SL-DGTVKEIGPP--------------------AVYTSLDPSPDEKYILISSIHRPYSF--IV----------------- 359 (953)
Q Consensus 320 ~~-~g~~~~l~~~--------------------~~~~~~~~SpDG~~l~~~~~~~~~~~--~~----------------- 359 (953)
++ +|+..+++.. +....+.|||||++|+|.+.+..... ..
T Consensus 138 ~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~ 217 (470)
T d2bgra1 138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP 217 (470)
T ss_dssp SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred ECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeec
Confidence 87 6766665532 12244679999999999986543100 00
Q ss_pred -c---CCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeE
Q 002209 360 -P---CGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDII 435 (953)
Q Consensus 360 -~---~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l 435 (953)
+ ...-...+++|+++++....+.... ....+............+.|+++++.++++.++..+ ...-.+
T Consensus 218 ~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~-------~~~~~~ 289 (470)
T d2bgra1 218 YPKAGAVNPTVKFFVVNTDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN-------YSVMDI 289 (470)
T ss_dssp CCBTTSCCCEEEEEEEEGGGCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT-------EEEEEE
T ss_pred cccccccCCcceEEEEECCCcceeeecccc-ccCCccccCCCCceEEEEEEcCCCceeEEEeeccCC-------ceEEEE
Confidence 0 0011123555555533221111100 000000000011122458899999866665443211 001134
Q ss_pred EEEecCCCCCCCceEEee------c-c-----cccCCeeeccCCceE-EEEEecccCceEEEEEcCCCCCCCcEEeecCC
Q 002209 436 YTQQAEPVQGEGPEILHK------L-D-----LRYGGISWCDDSLAL-VYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (953)
Q Consensus 436 ~~~d~~~~~g~~~~~l~~------~-~-----~~~~~~~~SpDg~~l-~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 502 (953)
+.+|. .++....+.. . . .....+.|++++... ++.+..+ +..+||.++.+++ ....++...
T Consensus 290 ~~~d~---~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~d-g~~~ly~~~~~g~--~~~~lt~g~ 363 (470)
T d2bgra1 290 CDYDE---SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEE-GYRHICYFQIDKK--DCTFITKGT 363 (470)
T ss_dssp EEEET---TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTT-SCEEEEEEETTCS--CCEESCCSS
T ss_pred EEecC---CCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccC-cCceeEEEeccCC--ceeeeccCC
Confidence 44442 3333332210 0 0 112346788877654 4444443 4578999998874 566666544
Q ss_pred CccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCC-ceEEEeccCcccceeeeEe
Q 002209 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTG-SKERIWESDKEKYYETTVA 581 (953)
Q Consensus 503 ~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~-~~~~l~~~~~~~~~~~~~~ 581 (953)
... . -.+++|++.++|..... +..| ...|||.+++.++ +.++|+......
T Consensus 364 ~~v-~-------~~~~~d~~~iyf~a~~~------------~~~p--~~~~ly~v~~~g~~~~~~lt~~~~~~------- 414 (470)
T d2bgra1 364 WEV-I-------GIEALTSDYLYYISNEY------------KGMP--GGRNLYKIQLSDYTKVTCLSCELNPE------- 414 (470)
T ss_dssp SCE-E-------EEEEECSSEEEEEESCG------------GGCT--TCBEEEEEETTCTTCEEESSTTTSTT-------
T ss_pred eeE-E-------EEEEECCCEEEEEEecC------------CCCc--ceEEEEEEECCCCCceeEecccccCC-------
Confidence 332 1 12567778887776322 1111 2447999999875 456665422110
Q ss_pred eccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCe-eEEec
Q 002209 582 LMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS-CQITD 626 (953)
Q Consensus 582 ~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~-~~Lt~ 626 (953)
.......+|||||++++.+++++..|. +.+++..+|+. +.|++
T Consensus 415 -~~~~~s~~fSpdgky~~~~~s~~~~P~-~~l~~~~~g~~v~~le~ 458 (470)
T d2bgra1 415 -RCQYYSVSFSKEAKYYQLRCSGPGLPL-YTLHSSVNDKGLRVLED 458 (470)
T ss_dssp -TBCBEEEEECTTSSEEEEEECSBSSCE-EEEEETTTTEEEEEEEC
T ss_pred -CCCEEEEEECCCCCEEEEEecCCCCCe-EEEEECCCCCEEEEEec
Confidence 001124679999999999999999887 45667677765 55553
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.3e-19 Score=204.35 Aligned_cols=357 Identities=12% Similarity=0.072 Sum_probs=216.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCC-
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG- 188 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~- 188 (953)
.+...+|||||++|+|..+. ....+-++.+.+||+|+.+ +..+.|......
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~------------------------~~~~r~s~~~~~~i~d~~~----~~~~~l~~~~~~~ 113 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNV------------------------EPIYQHSYTGYYVLSKIPH----GDPQSLDPPEVSN 113 (465)
T ss_dssp TCSEEEECTTSSEEEEEESC------------------------CCCSSSCCCSEEEEEESSS----CCCEECCCTTCCS
T ss_pred ccceeEECCCCCeEEEEEcc------------------------cceeEeeccccEEEEEccC----CceeeccCccCCc
Confidence 34567899999999998763 1112223345889999965 455566433222
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc--ccc------------cccceEEecC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY--LNA------------IFDNFVWVNN 254 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~--~~~------------~~~~~~wspD 254 (953)
..+..|.|||||++|||++ +.+||+++..+++..++|..+... .++ .-..+-||||
T Consensus 114 ~~l~~~~wSPDG~~iafv~----------~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPD 183 (465)
T d1xfda1 114 AKLQYAGWGPKGQQLIFIF----------ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD 183 (465)
T ss_dssp CCCSBCCBCSSTTCEEEEE----------TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT
T ss_pred cccceeeeccCCceEEEEe----------cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCC
Confidence 2567899999999999987 568999999999888888654321 111 0124669999
Q ss_pred CeEEEEEecCCCCCC----CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeC
Q 002209 255 STLLVCTIPLLRGDP----PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG 329 (953)
Q Consensus 255 g~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~ 329 (953)
|+.|+|...+..... +... ....+..... ..+.-+. -....+|+++++ ++..+...
T Consensus 184 gk~iaf~~~D~s~V~~~~~~~~~-~~~~p~~~~~---------------~Yp~~G~---~np~~~l~v~d~~~~~~~~~~ 244 (465)
T d1xfda1 184 GTRLAYAAINDSRVPIMELPTYT-GSIYPTVKPY---------------HYPKAGS---ENPSISLHVIGLNGPTHDLEM 244 (465)
T ss_dssp SSEEEEEEEECTTSCEEEECCCS-SSSSCCCEEE---------------ECCBTTS---CCCEEEEEEEESSSSCCCEEC
T ss_pred CCeEEEEEecccccceeeccccc-ccccceeeee---------------eccccCC---CCCceeEEEEecCCCcEEEEE
Confidence 999999854433221 0000 0000111000 0000000 002357999999 55444332
Q ss_pred CC--------CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCc
Q 002209 330 PP--------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (953)
Q Consensus 330 ~~--------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~ 401 (953)
.+ ..+..+.|+|||+.+++..++... ...+.++|..++..+.+..... ..+.+ ...
T Consensus 245 ~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~---------~~~i~~~d~~tg~~~~~~~e~~----~~wv~---~~~ 308 (465)
T d1xfda1 245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQN---------VSILTLCDATTGVCTKKHEDES----EAWLH---RQN 308 (465)
T ss_dssp CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSC---------EEEEEEEETTTCCEEEEEEEEC----SSCCC---CCC
T ss_pred eccCcCccccceeeeeEEcCCCeEEEEEEccccc---------cceEEEEcCCCCcEEEEEEEcC----CceEe---ccC
Confidence 21 124568899999877666654321 1268888998877776654211 11111 112
Q ss_pred cceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecC----CCCCCCceEEeecccccCCe-eeccCCceEEEEEec
Q 002209 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAE----PVQGEGPEILHKLDLRYGGI-SWCDDSLALVYESWY 476 (953)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~----~~~g~~~~~l~~~~~~~~~~-~~SpDg~~l~~~~~~ 476 (953)
..+.|+|||+.++|..... .+++++++.+.+. ...++..+.||.+++.+..+ .|.++++.|+|.++.
T Consensus 309 ~~p~~~~dg~~~~fi~~se--------~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~ 380 (465)
T d1xfda1 309 EEPVFSKDGRKFFFIRAIP--------QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE 380 (465)
T ss_dssp CCCEECTTSCSEEEEEEEC--------CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS
T ss_pred CceeEccCCCeeEEEEeee--------ecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeC
Confidence 3578999999988762211 1446677766431 12455667899998887764 799999999998865
Q ss_pred c-cCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEE
Q 002209 477 K-TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLD 555 (953)
Q Consensus 477 ~-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 555 (953)
+ ..+.+||.++++++. ....++..... .++...++|||||++++....+. +.|...
T Consensus 381 ~~p~~~hly~v~l~g~~-~~~~lt~~~~~----~~~~~~~~~S~~~~y~v~~~s~~------------------~~P~~~ 437 (465)
T d1xfda1 381 DLPRRRQLYSANTVGNF-NRQCLSCDLVE----NCTYFSASFSHSMDFFLLKCEGP------------------GVPMVT 437 (465)
T ss_dssp SCTTCCEEEEECSSTTC-CCBCSSTTSSS----SCCCCEEEECTTSSEEEEECCSS------------------SSCCEE
T ss_pred CCCCceEEEEEECCCCC-cceeeccccCC----CCCEEEEEECCCCCEEEEEeecC------------------CCCeEE
Confidence 4 345689999998852 33333322111 11222378999999988776432 244577
Q ss_pred EEECCCCceEEEecc
Q 002209 556 LFDINTGSKERIWES 570 (953)
Q Consensus 556 ~~d~~~~~~~~l~~~ 570 (953)
+++..+++.......
T Consensus 438 ~~~~~~~~~~~~Le~ 452 (465)
T d1xfda1 438 VHNTTDKKKMFDLET 452 (465)
T ss_dssp EEETTTCCEEEEEEC
T ss_pred EEECCCCCEEEEEcC
Confidence 777777766555443
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.85 E-value=1.6e-20 Score=186.61 Aligned_cols=209 Identities=13% Similarity=0.087 Sum_probs=154.1
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
+.+.+++...+| ++.+.+..|.... ..+.+++|++|+.+..++.. ...+....+..|+++||.|+.
T Consensus 7 ~~~~l~i~gp~G-~l~~~~~~p~~~~---~~~~~~~vl~Hph~~~GG~~----------~~~~~~~la~~l~~~G~~vlr 72 (218)
T d2fuka1 7 ESAALTLDGPVG-PLDVAVDLPEPDV---AVQPVTAIVCHPLSTEGGSM----------HNKVVTMAARALRELGITVVR 72 (218)
T ss_dssp SCEEEEEEETTE-EEEEEEECCCTTS---CCCSEEEEEECSCTTTTCST----------TCHHHHHHHHHHHTTTCEEEE
T ss_pred CceEEEEeCCCc-cEEEEEEcCCCCC---CCCCcEEEEECCCCCCCcCC----------CChHHHHHHHHHHHcCCeEEE
Confidence 346788998888 7999999986422 23467889999764322111 111112356678899999999
Q ss_pred cCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC
Q 002209 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~ 797 (953)
+ +++|+|.+.+........++|+.++++|+.++. +.++++++|+||||.+++.++.+. .++++|+++|..+..
T Consensus 73 f---d~RG~G~S~g~~~~~~~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~--~~~~lil~ap~~~~~ 145 (218)
T d2fuka1 73 F---NFRSVGTSAGSFDHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRW 145 (218)
T ss_dssp E---CCTTSTTCCSCCCTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTB
T ss_pred e---ecCCCccCCCccCcCcchHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhccc--ccceEEEeCCcccch
Confidence 4 456788876654455678899999999998874 357999999999999999988875 378999998865421
Q ss_pred CCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002209 798 LTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (953)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (953)
. .. ..++.+|+|++||++|.+|| ++++.++++++. .+++++++||++|.|
T Consensus 146 ~---------------------~~----~~~~~~P~Lvi~G~~D~~vp--~~~~~~l~~~~~---~~~~l~~i~ga~H~f 195 (218)
T d2fuka1 146 D---------------------FS----DVQPPAQWLVIQGDADEIVD--PQAVYDWLETLE---QQPTLVRMPDTSHFF 195 (218)
T ss_dssp C---------------------CT----TCCCCSSEEEEEETTCSSSC--HHHHHHHHTTCS---SCCEEEEETTCCTTC
T ss_pred h---------------------hh----ccccccceeeEecCCCcCcC--HHHHHHHHHHcc---CCceEEEeCCCCCCC
Confidence 0 00 12356899999999999999 998888876554 347899999999988
Q ss_pred CCcccHHHHHHHHHHHHHHhcc
Q 002209 878 AARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 878 ~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
.. ....+.+.+.+|+.+||.
T Consensus 196 ~~--~~~~l~~~~~~~v~~~l~ 215 (218)
T d2fuka1 196 HR--KLIDLRGALQHGVRRWLP 215 (218)
T ss_dssp TT--CHHHHHHHHHHHHGGGCS
T ss_pred CC--CHHHHHHHHHHHHHHhcC
Confidence 64 335677889999999884
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.4e-19 Score=189.37 Aligned_cols=235 Identities=15% Similarity=0.134 Sum_probs=166.6
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
+|||.|. || ...++|+..+ ..+..|+|||||++|||++. ..+...+|+++.+++..++++.....
T Consensus 20 ~l~i~d~--dG--~~~~~l~~~~--~~~~sP~wSPDGk~IAf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--- 84 (269)
T d2hqsa1 20 ELRVSDY--DG--YNQFVVHRSP--QPLMSPAWSPDGSKLAYVTF------ESGRSALVIQTLANGAVRQVASFPRH--- 84 (269)
T ss_dssp EEEEEET--TS--CSCEEEEEES--SCEEEEEECTTSSEEEEEEC------TTSSCEEEEEETTTCCEEEEECCSSC---
T ss_pred EEEEEcC--CC--CCcEEEecCC--CceeeeEECCCCCEEEEEEe------eccCcceeeeecccCceeEEeeeecc---
Confidence 7999997 55 5667776433 45789999999999999875 44677899999999998888876553
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~ 322 (953)
...+.|||||+.|++..... +...++.... .
T Consensus 85 --~~~~~~spdg~~i~~~~~~~----------------------------------------------~~~~~~~~~~~~ 116 (269)
T d2hqsa1 85 --NGAPAFSPDGSKLAFALSKT----------------------------------------------GSLNLYVMDLAS 116 (269)
T ss_dssp --EEEEEECTTSSEEEEEECTT----------------------------------------------SSCEEEEEETTT
T ss_pred --cccceecCCCCeeeEeeecC----------------------------------------------Cccceeeccccc
Confidence 45789999999999872110 2233444444 4
Q ss_pred CceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCc
Q 002209 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (953)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~ 401 (953)
......... .....+.++++++.+++.+.... ..+|++.+++++...+++.... ..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~~~i~~~~~~~~~~~~~~~~~~-------------~~ 173 (269)
T d2hqsa1 117 GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG----------RPQVYKVNINGGAPQRITWEGS-------------QN 173 (269)
T ss_dssp CCEEECCCCSSCEEEEEECTTSSEEEEEECTTS----------SCEEEEEETTSSCCEECCCSSS-------------EE
T ss_pred ccceeeeeccccccccccccccccceecccccC----------CceEeeeecccccceeeecccc-------------cc
Confidence 444444444 55567789999999999885431 2378899998877776665432 12
Q ss_pred cceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCce
Q 002209 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (953)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 481 (953)
..+.|||||+.++|.... .+...+++++. .++. ..++........+.|||||++|+|.+..+ ...
T Consensus 174 ~~~~~spdg~~~~~~~~~----------~~~~~i~~~~~---~~~~-~~~~~~~~~~~~p~~SPDG~~i~f~s~~~-~~~ 238 (269)
T d2hqsa1 174 QDADVSSDGKFMVMVSSN----------GGQQHIAKQDL---ATGG-VQVLSSTFLDETPSLAPNGTMVIYSSSQG-MGS 238 (269)
T ss_dssp EEEEECTTSSEEEEEEEC----------SSCEEEEEEET---TTCC-EEECCCSSSCEEEEECTTSSEEEEEEEET-TEE
T ss_pred cccccccccceeEEEeec----------CCceeeeEeec---cccc-ceEeecCccccceEECCCCCEEEEEEcCC-CCc
Confidence 457899999998887322 23446788874 4444 44555555566799999999999998765 346
Q ss_pred EEEEEcCCCCCCCcEEeecC
Q 002209 482 RTWVISPGSKDVAPRILFDR 501 (953)
Q Consensus 482 ~l~~~d~~~~~~~~~~~~~~ 501 (953)
+||+++++++ ..+.++..
T Consensus 239 ~l~~~~~dg~--~~~~lt~~ 256 (269)
T d2hqsa1 239 VLNLVSTDGR--FKARLPAT 256 (269)
T ss_dssp EEEEEETTSC--CEEECCCS
T ss_pred EEEEEECCCC--CEEEEeCC
Confidence 8999999985 45566554
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.84 E-value=4.9e-19 Score=201.66 Aligned_cols=357 Identities=15% Similarity=0.045 Sum_probs=214.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++|||.++. ....+.+..+++||||+.+ ++.++++..+ .
T Consensus 63 ~i~~~~~SpDg~~i~~~~~~------------------------~~~~r~s~~~~~~l~d~~~----~~~~~l~~~~--~ 112 (470)
T d2bgra1 63 SINDYSISPDGQFILLEYNY------------------------VKQWRHSYTASYDIYDLNK----RQLITEERIP--N 112 (470)
T ss_dssp CCCEEEECTTSSEEEEEEEE------------------------EECSSSCEEEEEEEEETTT----TEECCSSCCC--T
T ss_pred ccceeEECCCCCEEEEEECC------------------------cceeeeccCceEEEEECCC----CcccccccCC--c
Confidence 46788999999999998863 1222334556899999954 5556665544 4
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc--cc------------ccccceEEecCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY--LN------------AIFDNFVWVNNS 255 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~--~~------------~~~~~~~wspDg 255 (953)
.+..|.|||||++|||.+ +.+||+++..+|+..+++...... .+ .....+.|||||
T Consensus 113 ~~~~~~~SPDG~~ia~~~----------~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDG 182 (470)
T d2bgra1 113 NTQWVTWSPVGHKLAYVW----------NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 182 (470)
T ss_dssp TEEEEEECSSTTCEEEEE----------TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS
T ss_pred cccccccccCcceeeEee----------cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCC
Confidence 688999999999999976 458999999999988887644321 00 012346799999
Q ss_pred eEEEEEecCCCCCCCC----CC-CCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeC
Q 002209 256 TLLVCTIPLLRGDPPK----KP-LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG 329 (953)
Q Consensus 256 ~~l~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~ 329 (953)
+.|+|...+....... .. .....+.... ......+. ......++++++ ++....+.
T Consensus 183 k~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~---------------~~~~~~g~---~~~~~~~~v~~~~~~~~~~~~ 244 (470)
T d2bgra1 183 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVR---------------VPYPKAGA---VNPTVKFFVVNTDSLSSVTNA 244 (470)
T ss_dssp SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEE---------------EECCBTTS---CCCEEEEEEEEGGGCCSSSCC
T ss_pred CccceeEecCCcCceEEEEeeccCCCCCCeeee---------------eccccccc---cCCcceEEEEECCCcceeeec
Confidence 9999985443322100 00 0000000000 00000000 013356788888 55432221
Q ss_pred C------------C-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCC-cccc
Q 002209 330 P------------P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP-IAFN 395 (953)
Q Consensus 330 ~------------~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p-~~~~ 395 (953)
. . ..+..+.|+++++.+++...+..... ...++.+|..++..+.+.......... .+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~-------~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~ 317 (470)
T d2bgra1 245 TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYS-------VMDICDYDESSGRWNCLVARQHIEMSTTGWVG 317 (470)
T ss_dssp CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEE-------EEEEEEEETTTTEEEECGGGCEEEECSSSCSS
T ss_pred cccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCce-------EEEEEEecCCCCcEEEEEEEeeeeeeccceee
Confidence 1 1 23456889999987777654431111 012334444456665554322111111 1111
Q ss_pred ccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEe
Q 002209 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (953)
Q Consensus 396 ~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~ 475 (953)
. .....+.|+++++..+++.... ++..+||+++. +++..+.++.+.+.+..+ +++|++.|+|.+.
T Consensus 318 ~--~~~~~~~~~~~~~~~~~~~s~~---------dg~~~ly~~~~---~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~ 382 (470)
T d2bgra1 318 R--FRPSEPHFTLDGNSFYKIISNE---------EGYRHICYFQI---DKKDCTFITKGTWEVIGI-EALTSDYLYYISN 382 (470)
T ss_dssp S--SSCCCCEECTTSSEEEEEEECT---------TSCEEEEEEET---TCSCCEESCCSSSCEEEE-EEECSSEEEEEES
T ss_pred c--ccCCCceeeecCCCcEEEEecc---------CcCceeEEEec---cCCceeeeccCCeeEEEE-EEECCCEEEEEEe
Confidence 1 1123577888888776664333 34668999995 788889999888777665 6778889988875
Q ss_pred cc---cCceEEEEEcCCCCCCCcEEeecCC---CccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCC
Q 002209 476 YK---TRRTRTWVISPGSKDVAPRILFDRS---SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEG 549 (953)
Q Consensus 476 ~~---~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (953)
.. ....+||.++++++ .....++... ...+++ ++|||||++++....+.
T Consensus 383 ~~~~~p~~~~ly~v~~~g~-~~~~~lt~~~~~~~~~~~s------~~fSpdgky~~~~~s~~------------------ 437 (470)
T d2bgra1 383 EYKGMPGGRNLYKIQLSDY-TKVTCLSCELNPERCQYYS------VSFSKEAKYYQLRCSGP------------------ 437 (470)
T ss_dssp CGGGCTTCBEEEEEETTCT-TCEEESSTTTSTTTBCBEE------EEECTTSSEEEEEECSB------------------
T ss_pred cCCCCcceEEEEEEECCCC-CceeEecccccCCCCCEEE------EEECCCCCEEEEEecCC------------------
Confidence 32 23458999999875 3445554221 111222 78999999998887433
Q ss_pred CCCeEEEEECCCCceEEEeccC
Q 002209 550 NIPFLDLFDINTGSKERIWESD 571 (953)
Q Consensus 550 ~~~~L~~~d~~~~~~~~l~~~~ 571 (953)
+.|...+++..+|+..++++..
T Consensus 438 ~~P~~~l~~~~~g~~v~~le~n 459 (470)
T d2bgra1 438 GLPLYTLHSSVNDKGLRVLEDN 459 (470)
T ss_dssp SSCEEEEEETTTTEEEEEEECC
T ss_pred CCCeEEEEECCCCCEEEEEecc
Confidence 2445778888888877776543
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.84 E-value=2.4e-20 Score=190.29 Aligned_cols=207 Identities=16% Similarity=0.109 Sum_probs=150.6
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEc
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (953)
.|.|+|++.||.++.+++..|.+ +++|+||++|++.. ........+..|+++||.|+.+
T Consensus 3 ~e~v~~~~~dg~~~~a~~~~P~~------~~~P~vl~~h~~~G---------------~~~~~~~~a~~lA~~Gy~vl~p 61 (233)
T d1dina_ 3 TEGISIQSYDGHTFGALVGSPAK------APAPVIVIAQEIFG---------------VNAFMRETVSWLVDQGYAAVCP 61 (233)
T ss_dssp CTTCCEECTTSCEECEEEECCSS------SSEEEEEEECCTTB---------------SCHHHHHHHHHHHHTTCEEEEE
T ss_pred ceEEEEEcCCCCEEEEEEECCCC------CCceEEEEeCCCCC---------------CCHHHHHHHHHHHhcCCcceee
Confidence 46788999999999999999963 36999999997421 1111124567899999999998
Q ss_pred CCCCCCCCCChhhh--------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcc
Q 002209 719 PTTPIIGEGDEEAN--------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (953)
Q Consensus 719 ~~~~~~G~G~~~~~--------------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 784 (953)
|.++..+.+..... .........|+.++++++.+.+. +..||+++|+|+||.+++.++.+. .+
T Consensus 62 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~~-~~~~i~~~G~s~Gg~~a~~~a~~~--~~ 138 (233)
T d1dina_ 62 DLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY-SNGKVGLVGYCLGGALAFLVAAKG--YV 138 (233)
T ss_dssp CGGGGTSTTCBCCTTSHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTT-EEEEEEEEEETHHHHHHHHHHHHT--CS
T ss_pred eeccCCCcCcccChHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCC-CCCceEEEEecccccceeeccccc--cc
Confidence 87654443322110 01134557899999999988764 457999999999999999998775 36
Q ss_pred cEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc
Q 002209 785 CCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (953)
Q Consensus 785 ~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (953)
.++++..+.. . .+++..+.++++|+|++||++|..|| .+....+++.++ .+.+
T Consensus 139 ~~~~~~~~~~--------~----------------~~~~~~~~~i~~Pvl~~~G~~D~~vp--~e~~~~~~~~~~-~~~~ 191 (233)
T d1dina_ 139 DRAVGYYGVG--------L----------------EKQLNKVPEVKHPALFHMGGQDHFVP--APSRQLITEGFG-ANPL 191 (233)
T ss_dssp SEEEEESCSC--------G----------------GGGGGGGGGCCSCEEEEEETTCTTSC--HHHHHHHHHHHT-TCTT
T ss_pred ceeccccccc--------c----------------ccchhhhhccCCcceeeecccccCCC--HHHHHHHHHHHh-cCCC
Confidence 6666655421 0 12334455788999999999999998 888777777664 5788
Q ss_pred EEEEEeCCCCccCCCc-------ccHHHHHHHHHHHHHH
Q 002209 865 CRLVILPFESHGYAAR-------ESIMHVLWETDRWLQK 896 (953)
Q Consensus 865 ~~~~~~~~~~H~~~~~-------~~~~~~~~~i~~fl~~ 896 (953)
+++++|||++|+|... ...+..++++++||.+
T Consensus 192 ~~~~~y~ga~HgF~~~~~~~y~~~aa~~a~~r~~~ffa~ 230 (233)
T d1dina_ 192 LQVHWYEEAGHSFARTSSSGYVASAAALANERTLDFLAP 230 (233)
T ss_dssp EEEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGG
T ss_pred EEEEEECCCCcCCCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 9999999999998521 2234567888899865
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=6.5e-19 Score=184.23 Aligned_cols=254 Identities=15% Similarity=0.150 Sum_probs=177.1
Q ss_pred CeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002209 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (953)
Q Consensus 201 ~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (953)
.+|||++..+ .+.+..+||++|.+|+..++|+..+.. +.+++|||||+.|+|....
T Consensus 4 ~~iay~~~~~---~~~~~~~l~i~d~dG~~~~~l~~~~~~-----~~sP~wSPDGk~IAf~~~~---------------- 59 (269)
T d2hqsa1 4 TRIAYVVQTN---GGQFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFE---------------- 59 (269)
T ss_dssp CEEEEEEECS---SSSCCEEEEEEETTSCSCEEEEEESSC-----EEEEEECTTSSEEEEEECT----------------
T ss_pred CeEEEEEEeC---CCCceEEEEEEcCCCCCcEEEecCCCc-----eeeeEECCCCCEEEEEEee----------------
Confidence 6899988743 344456899999999999999876653 5689999999999998211
Q ss_pred eeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCcccc
Q 002209 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (953)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~ 358 (953)
. ....++.++. ++..++++.. +....+.|||||++|++.......
T Consensus 60 ----------------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~--- 106 (269)
T d2hqsa1 60 ----------------------S--------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGS--- 106 (269)
T ss_dssp ----------------------T--------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSS---
T ss_pred ----------------------c--------cCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCc---
Confidence 0 3356888898 7777777766 777789999999999998854311
Q ss_pred ccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEE
Q 002209 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (953)
Q Consensus 359 ~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (953)
..+..+............... ....+.|+++++.+++.... .+...+++.
T Consensus 107 -------~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~----------~g~~~i~~~ 156 (269)
T d2hqsa1 107 -------LNLYVMDLASGQIRQVTDGRS-------------NNTEPTWFPDSQNLAFTSDQ----------AGRPQVYKV 156 (269)
T ss_dssp -------CEEEEEETTTCCEEECCCCSS-------------CEEEEEECTTSSEEEEEECT----------TSSCEEEEE
T ss_pred -------cceeecccccccceeeeeccc-------------cccccccccccccceecccc----------cCCceEeee
Confidence 123333333333333332221 11346789999877766221 234578888
Q ss_pred ecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEec
Q 002209 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (953)
Q Consensus 439 d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~S 518 (953)
++ +++....++........+.|||||+.+++.....+ ...+++++..++ . ..++.....+ . . +.||
T Consensus 157 ~~---~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~-~~~i~~~~~~~~--~-~~~~~~~~~~-~----~--p~~S 222 (269)
T d2hqsa1 157 NI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG-QQHIAKQDLATG--G-VQVLSSTFLD-E----T--PSLA 222 (269)
T ss_dssp ET---TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS-CEEEEEEETTTC--C-EEECCCSSSC-E----E--EEEC
T ss_pred ec---ccccceeeecccccccccccccccceeEEEeecCC-ceeeeEeecccc--c-ceEeecCccc-c----c--eEEC
Confidence 85 66666777777777778999999999999877654 468999998874 2 3333322221 1 1 6799
Q ss_pred cCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcc
Q 002209 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKE 573 (953)
Q Consensus 519 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~ 573 (953)
|||++|+|..... ....||+++++++..++|+...+.
T Consensus 223 PDG~~i~f~s~~~------------------~~~~l~~~~~dg~~~~~lt~~~g~ 259 (269)
T d2hqsa1 223 PNGTMVIYSSSQG------------------MGSVLNLVSTDGRFKARLPATDGQ 259 (269)
T ss_dssp TTSSEEEEEEEET------------------TEEEEEEEETTSCCEEECCCSSSE
T ss_pred CCCCEEEEEEcCC------------------CCcEEEEEECCCCCEEEEeCCCCc
Confidence 9999999987432 234699999999999999987754
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.82 E-value=1.2e-19 Score=188.05 Aligned_cols=207 Identities=15% Similarity=0.089 Sum_probs=149.3
Q ss_pred ceEEEEEEcCCC-cEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 638 QKELIKYQRKDG-VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 638 ~~~~~~~~~~dg-~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
....+++....+ ....++||+|.+.. ++++|+||++||+... ... ...++..|+++||+|+
T Consensus 22 ~~~~~~~~~~~~~g~~~~~ly~P~~~~---~g~~P~Vv~~HG~~g~-----------~~~----~~~~a~~lA~~Gy~V~ 83 (260)
T d1jfra_ 22 ATSQTSVSSLVASGFGGGTIYYPTSTA---DGTFGAVVISPGFTAY-----------QSS----IAWLGPRLASQGFVVF 83 (260)
T ss_dssp CEEEEEECTTTCSSSCCEEEEEESCCT---TCCEEEEEEECCTTCC-----------GGG----TTTHHHHHHTTTCEEE
T ss_pred ceeEEEeccCCcCcccCEEEEEcCCCC---CCCccEEEEECCCCCC-----------HHH----HHHHHHHHHhCCCEEE
Confidence 344455543322 12457899997622 3469999999995211 111 1235678999999999
Q ss_pred EcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEccc
Q 002209 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR----GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~----~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (953)
.++++ |.+.. ......|+.++++++.+. +.+|.+||+++|||+||.+++.++...+ +++|+|+++|
T Consensus 84 ~~d~~---~~~~~------~~~~~~d~~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~-~~~A~v~~~~ 153 (260)
T d1jfra_ 84 TIDTN---TTLDQ------PDSRGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRT-SLKAAIPLTG 153 (260)
T ss_dssp EECCS---STTCC------HHHHHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESC
T ss_pred EEeeC---CCcCC------chhhHHHHHHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhc-cchhheeeec
Confidence 97664 33222 134456778888888774 5689999999999999999999999985 6999998887
Q ss_pred CCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC
Q 002209 793 AYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (953)
Q Consensus 793 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 872 (953)
... .....++++|+|++||+.|.++| +++..+.+.+....+.+++++.++|
T Consensus 154 ~~~---------------------------~~~~~~~~~P~l~i~G~~D~~vp--~~~~~~~~~~~~~~~~~~~~~~i~g 204 (260)
T d1jfra_ 154 WNT---------------------------DKTWPELRTPTLVVGADGDTVAP--VATHSKPFYESLPGSLDKAYLELRG 204 (260)
T ss_dssp CCS---------------------------CCCCTTCCSCEEEEEETTCSSSC--TTTTHHHHHHHSCTTSCEEEEEETT
T ss_pred ccc---------------------------cccccccccceeEEecCCCCCCC--HHHHHHHHHHhcccCCCEEEEEECC
Confidence 532 12234678999999999999998 8775555555555678899999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHHhccCCC
Q 002209 873 ESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 873 ~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (953)
++|.+....+ ..+.+.+++||++||+...
T Consensus 205 a~H~~~~~~~-~~~~~~~~~wl~~~L~~d~ 233 (260)
T d1jfra_ 205 ASHFTPNTSD-TTIAKYSISWLKRFIDSDT 233 (260)
T ss_dssp CCTTGGGSCC-HHHHHHHHHHHHHHHSCCG
T ss_pred CccCCCCCCh-HHHHHHHHHHHHHHhcCch
Confidence 9998754333 5667788999999997653
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.81 E-value=5.4e-19 Score=187.54 Aligned_cols=226 Identities=11% Similarity=0.040 Sum_probs=149.7
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCC
Q 002209 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT 720 (953)
Q Consensus 641 ~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~ 720 (953)
.-.++..||..+++|.+.|++..+. +.|+||++||... .......++.+|+++||.|+++|+
T Consensus 6 ~h~~~~~dg~~l~~w~~~p~~~~~~---~~~~Vvi~HG~~~---------------~~~~~~~~a~~L~~~G~~Vi~~D~ 67 (302)
T d1thta_ 6 AHVLRVNNGQELHVWETPPKENVPF---KNNTILIASGFAR---------------RMDHFAGLAEYLSTNGFHVFRYDS 67 (302)
T ss_dssp EEEEEETTTEEEEEEEECCCTTSCC---CSCEEEEECTTCG---------------GGGGGHHHHHHHHTTTCCEEEECC
T ss_pred eeEEEcCCCCEEEEEEecCcCCCCC---CCCEEEEeCCCcc---------------hHHHHHHHHHHHHHCCCEEEEecC
Confidence 3446778999999999999763332 4789999999521 111224567889999999999555
Q ss_pred CCCCCC-CChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC
Q 002209 721 TPIIGE-GDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (953)
Q Consensus 721 ~~~~G~-G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~ 797 (953)
+|+ |.+.+. .........|+.+++++|.+++ .++++|+||||||.+++.+|.. ..++++|+.+|+.+..
T Consensus 68 ---rGh~G~S~g~~~~~~~~~~~~dl~~vi~~l~~~~---~~~i~lvG~SmGG~ial~~A~~--~~v~~li~~~g~~~~~ 139 (302)
T d1thta_ 68 ---LHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD--LELSFLITAVGVVNLR 139 (302)
T ss_dssp ---CBCC--------CCCHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT--SCCSEEEEESCCSCHH
T ss_pred ---CCCCCCCCCcccCCCHHHHHHHHHHHHHhhhccC---CceeEEEEEchHHHHHHHHhcc--cccceeEeecccccHH
Confidence 454 555432 2335677899999999998764 4689999999999999888754 3589999999876521
Q ss_pred C---------CC-cCc---cccc----chhhhh---HHHHHh-c----CcccccCCCCCcEEEEEeCCCCCCCCchHHHH
Q 002209 798 L---------TP-FGF---QNED----RTLWEA---TSTYVE-M----SPFMSANKLKKPILLVHGEEDNNSGTLTMQSD 852 (953)
Q Consensus 798 ~---------~~-~~~---~~~~----~~~~~~---~~~~~~-~----sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~ 852 (953)
. .. ... .... ...... .+.+.. . ++...+.++++|+|++||++|..|| ++.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~V~--~~~~~ 217 (302)
T d1thta_ 140 DTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVK--QEEVY 217 (302)
T ss_dssp HHHHHHHSSCGGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSC--HHHHH
T ss_pred HHHHHHHhhccchhhhhhccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEeCCCCccC--HHHHH
Confidence 1 00 000 0000 000000 000100 0 2345678899999999999999999 99999
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCccc-HHHHHHHHHHHHHH
Q 002209 853 RFFNALKGHGALCRLVILPFESHGYAARES-IMHVLWETDRWLQK 896 (953)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~-~~~~~~~i~~fl~~ 896 (953)
++++.++. .++++++++|++|.+..... ...+++.+..+...
T Consensus 218 ~l~~~i~s--~~~kl~~~~g~~H~l~e~~~~~~~~~~~~~~~~~~ 260 (302)
T d1thta_ 218 DMLAHIRT--GHCKLYSLLGSSHDLGENLVVLRNFYQSVTKAAIA 260 (302)
T ss_dssp HHHTTCTT--CCEEEEEETTCCSCTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC--CCceEEEecCCCcccccChHHHHHHHHHHHHHHhh
Confidence 99887753 35899999999999853221 23345555555443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.80 E-value=2.6e-18 Score=180.68 Aligned_cols=258 Identities=12% Similarity=0.070 Sum_probs=168.1
Q ss_pred eEeccC--CCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002209 194 VTWSQD--GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (953)
Q Consensus 194 ~~wSPD--G~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~ 271 (953)
+.+||| |++|+|++ ..+||++|+++|+.++||..+.. ...+.|||||++|+|.......
T Consensus 4 ~~~sPdi~G~~v~f~~----------~~dl~~~d~~~g~~~~Lt~~~~~-----~~~p~~SPDG~~iaf~~~~~~~---- 64 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVC----------CDDLWEHDLKSGSTRKIVSNLGV-----INNARFFPDGRKIAIRVMRGSS---- 64 (281)
T ss_dssp CCEEEEEETTEEEEEE----------TTEEEEEETTTCCEEEEECSSSE-----EEEEEECTTSSEEEEEEEESTT----
T ss_pred cccCCCCCCCEEEEEe----------CCcEEEEECCCCCEEEEecCCCc-----ccCEEECCCCCEEEEEEeeCCC----
Confidence 467999 99999986 34799999999999999987653 5689999999999998221100
Q ss_pred CCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-C-------cccccccCCC
Q 002209 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-A-------VYTSLDPSPD 342 (953)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~-------~~~~~~~SpD 342 (953)
+ ...+||++++ +|+.++|+.. . ....+.||||
T Consensus 65 --------------------------------~-------~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spd 105 (281)
T d1k32a2 65 --------------------------------L-------NTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPD 105 (281)
T ss_dssp --------------------------------C-------CEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTT
T ss_pred --------------------------------C-------CceEEEEEEecCCceEEeeecCCCccCccccccccccCCC
Confidence 0 2357999999 8899998754 1 2346789999
Q ss_pred CcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 343 G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
|+.|+|+....+.. ....+++++.+++..+...... ....|.+|+..+++.......
T Consensus 106 g~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~ 162 (281)
T d1k32a2 106 GNLIISTDAMQPFS-------SMTCLYRVENDGINFVPLNLGP----------------ATHILFADGRRVIGRNTFELP 162 (281)
T ss_dssp CCEEEEECTTSSST-------TCCEEEEEEGGGTEEEECCSCS----------------CSEEEEETTEEEEEESCSCCT
T ss_pred CCEEEEEEccCCCc-------cceeeeeecCCCceeEEecCCc----------------cceeeecCCCeEEEeeccccc
Confidence 99999987543221 1225667777777665544321 235688888877776332221
Q ss_pred CCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCC
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 502 (953)
...... ........... .......++........+.++++ .+++..... ...+||.++++++ +.+.++...
T Consensus 163 ~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~l~~~d~~g~--~~~~lt~~~ 233 (281)
T d1k32a2 163 HWKGYR-GGTRGKIWIEV---NSGAFKKIVDMSTHVSSPVIVGH--RIYFITDID-GFGQIYSTDLDGK--DLRKHTSFT 233 (281)
T ss_dssp TSTTCC-STTCCEEEEEE---ETTEEEEEECCSSCCEEEEEETT--EEEEEECTT-SSCEEEEEETTSC--SCEECCCCC
T ss_pred eeeeec-cCCcceeeeec---cccceeeccCCccccceeeeecc--ccceecccc-cccceEEEeCCCC--ceEEeecCC
Confidence 111111 11112222221 22334444555555556777766 455554443 3468999999985 566666533
Q ss_pred CccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccC
Q 002209 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (953)
Q Consensus 503 ~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~ 571 (953)
... ...|||||+.|+|... ..||++|+++++.++|...+
T Consensus 234 ~~~--------~~~~SpDG~~I~f~~~----------------------~~l~~~d~~~g~~~~i~~~~ 272 (281)
T d1k32a2 234 DYY--------PRHLNTDGRRILFSKG----------------------GSIYIFNPDTEKIEKIEIGD 272 (281)
T ss_dssp SSC--------EEEEEESSSCEEEEET----------------------TEEEEECTTTCCEEECCCCC
T ss_pred Ccc--------cccCcCCCCEEEEEeC----------------------CEEEEEECCCCCEEEeccCC
Confidence 211 1469999999999752 13999999999999997655
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.80 E-value=4.8e-19 Score=192.79 Aligned_cols=237 Identities=22% Similarity=0.201 Sum_probs=167.2
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
+.+.++.+||.+|.+.+|+|++ .+|+|+||+.||..... ..... .+ ....+.|+++||+||..|
T Consensus 6 ~~v~ipmrDGv~L~~~vy~P~~-----~~~~P~il~~~pyg~~~----~~~~~---~~----~~~~~~~a~~GY~vv~~d 69 (347)
T d1ju3a2 6 SNVMVPMRDGVRLAVDLYRPDA-----DGPVPVLLVRNPYDKFD----VFAWS---TQ----STNWLEFVRDGYAVVIQD 69 (347)
T ss_dssp EEEEEECTTSCEEEEEEEEECC-----SSCEEEEEEEESSCTTC----CHHHH---TT----SCCTHHHHHTTCEEEEEE
T ss_pred eCeEEECCCCCEEEEEEEEcCC-----CCCEEEEEEEcCCCCcc----ccCcC---cc----cHHHHHHHHCCCEEEEEe
Confidence 5689999999999999999975 34699999999731000 00000 00 112457899999999955
Q ss_pred CCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC
Q 002209 720 TTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (953)
Q Consensus 720 ~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~ 799 (953)
. +|.|.|.+..........|..++++|+.++++.| .||+++|+|+||++++.+|+..|..++|+|+.++..|....
T Consensus 70 ~---RG~g~S~G~~~~~~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~~ 145 (347)
T d1ju3a2 70 T---RGLFASEGEFVPHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRA 145 (347)
T ss_dssp C---TTSTTCCSCCCTTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCC
T ss_pred e---CCccccCCccccccchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhhh
Confidence 5 5666665543444455678889999999999987 69999999999999999999998999999999998875321
Q ss_pred CcCccc-----ccchhh---------------------------------------------------------------
Q 002209 800 PFGFQN-----EDRTLW--------------------------------------------------------------- 811 (953)
Q Consensus 800 ~~~~~~-----~~~~~~--------------------------------------------------------------- 811 (953)
.+.+.. .....|
T Consensus 146 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (347)
T d1ju3a2 146 PWYGPGGALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHP 225 (347)
T ss_dssp CCSCTTCCCCHHHHHHHHHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTCC
T ss_pred hhhhcCCccchhhHHHHHHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhcc
Confidence 111000 000000
Q ss_pred hhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC------------
Q 002209 812 EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA------------ 879 (953)
Q Consensus 812 ~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~------------ 879 (953)
...+.+.+.++...+.++++|+|+++|..|..+ ..+.++|++++. +.+.++++-|. +|....
T Consensus 226 ~~~~~w~~~~~~~~~~~i~vP~L~i~G~~D~~~----~~~~~~~~~~~~-~~~~~liigpw-~H~~~~~~~~~~~~g~~~ 299 (347)
T d1ju3a2 226 DNDESWQSISLFERLGGLATPALITAGWYDGFV----GESLRTFVAVKD-NADARLVVGPW-SHSNLTGRNADRKFGIAA 299 (347)
T ss_dssp SCCHHHHTTCCHHHHTTCCCCEEEEEEEECTTH----HHHHHHHHHHTT-TSCEEEEEEEE-ESSCCSSEETTEECCGGG
T ss_pred cchhhhhcCCHHHHhhcCCCCEEEeccccCCCc----chhHHHHHHhhc-cCCceEEEcCc-cccCcccccCCCCCCccc
Confidence 001234445677788999999999999999764 457888888865 56788888886 564321
Q ss_pred cccHHHHHHHHHHHHHHhccCCC
Q 002209 880 RESIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 880 ~~~~~~~~~~i~~fl~~~l~~~~ 902 (953)
..........+++||++||+...
T Consensus 300 ~~~~~~~~~~~l~wfD~~LKg~~ 322 (347)
T d1ju3a2 300 TYPIQEATTMHKAFFDRHLRGET 322 (347)
T ss_dssp SCCHHHHHHHHHHHHHHHTSCCT
T ss_pred cccHHHHHHHHHHHHHHHhCCCC
Confidence 11245677788999999998654
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.80 E-value=6.9e-18 Score=169.48 Aligned_cols=211 Identities=17% Similarity=0.169 Sum_probs=161.3
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCC
Q 002209 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (953)
Q Consensus 642 ~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~ 721 (953)
+.|++.+| +|.+++..|+. .+.|++|++||.|...+.. ....-...+..|+++||.++. +
T Consensus 3 v~i~g~~G-~Le~~~~~~~~------~~~~~~l~~Hp~p~~GG~~----------~~~~~~~~a~~l~~~G~~~lr---f 62 (218)
T d2i3da1 3 VIFNGPAG-RLEGRYQPSKE------KSAPIAIILHPHPQFGGTM----------NNQIVYQLFYLFQKRGFTTLR---F 62 (218)
T ss_dssp EEEEETTE-EEEEEEECCSS------TTCCEEEEECCCGGGTCCT----------TSHHHHHHHHHHHHTTCEEEE---E
T ss_pred EEEeCCCc-cEEEEEeCCCC------CCCCEEEEECCCcCcCCcC----------CcHHHHHHHHHHHhcCeeEEE---E
Confidence 56888888 89998765432 2468999999976443321 111112345678899999999 6
Q ss_pred CCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCc
Q 002209 722 PIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF 801 (953)
Q Consensus 722 ~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~ 801 (953)
+++|.|.+.+..+.+..+.+|..++++|+..+... ..++.++|+|+||.+++.++.+.+ ...+++++++.....
T Consensus 63 n~RG~g~S~G~~~~~~~e~~d~~aa~~~~~~~~~~-~~~~~~~g~S~G~~~a~~~a~~~~-~~~~~~~~~~~~~~~---- 136 (218)
T d2i3da1 63 NFRSIGRSQGEFDHGAGELSDAASALDWVQSLHPD-SKSCWVAGYSFGAWIGMQLLMRRP-EIEGFMSIAPQPNTY---- 136 (218)
T ss_dssp CCTTSTTCCSCCCSSHHHHHHHHHHHHHHHHHCTT-CCCEEEEEETHHHHHHHHHHHHCT-TEEEEEEESCCTTTS----
T ss_pred ecCccCCCccccccchhHHHHHHHHHhhhhccccc-ccceeEEeeehHHHHHHHHHHhhc-cccceeecccccccc----
Confidence 66788888776666788899999999999988643 357999999999999999998884 467777776653311
Q ss_pred CcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHh-CCCcEEEEEeCCCCccCCCc
Q 002209 802 GFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG-HGALCRLVILPFESHGYAAR 880 (953)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~H~~~~~ 880 (953)
+...+..+..|.|++||+.|.+++ ..+..++++.++. ++...+++++||++|.|.
T Consensus 137 --------------------~~~~~~~~~~p~l~i~g~~D~~~~--~~~~~~l~~~~~~~~~~~~~~~vi~gAdHfF~-- 192 (218)
T d2i3da1 137 --------------------DFSFLAPCPSSGLIINGDADKVAP--EKDVNGLVEKLKTQKGILITHRTLPGANHFFN-- 192 (218)
T ss_dssp --------------------CCTTCTTCCSCEEEEEETTCSSSC--HHHHHHHHHHHTTSTTCCEEEEEETTCCTTCT--
T ss_pred --------------------chhhccccCCCceeeecccceecC--hHHHHHHHHHHhhccCCCccEEEeCCCCCCCc--
Confidence 112334457899999999999998 9999999999886 466789999999999885
Q ss_pred ccHHHHHHHHHHHHHHhccCCC
Q 002209 881 ESIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 881 ~~~~~~~~~i~~fl~~~l~~~~ 902 (953)
.....+.+.+.+||+++|....
T Consensus 193 g~~~~l~~~v~~~l~~~l~~~~ 214 (218)
T d2i3da1 193 GKVDELMGECEDYLDRRLNGEL 214 (218)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHHHhcCCCC
Confidence 3457888999999999996543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.78 E-value=1.9e-17 Score=173.98 Aligned_cols=262 Identities=13% Similarity=0.112 Sum_probs=166.2
Q ss_pred CceecCC--CCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 113 ALSFSPQ--RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 113 ~~~~SPD--G~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
.+.+||| |++|||++.+ +||++|+.+ ++.++|+..+ ..
T Consensus 3 ~~~~sPdi~G~~v~f~~~~----------------------------------dl~~~d~~~----g~~~~Lt~~~--~~ 42 (281)
T d1k32a2 3 NLLLNPDIHGDRIIFVCCD----------------------------------DLWEHDLKS----GSTRKIVSNL--GV 42 (281)
T ss_dssp CCCEEEEEETTEEEEEETT----------------------------------EEEEEETTT----CCEEEEECSS--SE
T ss_pred CcccCCCCCCCEEEEEeCC----------------------------------cEEEEECCC----CCEEEEecCC--Cc
Confidence 4578999 9999999874 799999943 6678887533 46
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc--cccccceEEecCCeEEEEEecCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL--NAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~--~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
+..|+|||||++|||+...+ ......+||++++.+|+.++||..+.... ......+.|+|||+.|+|+.......
T Consensus 43 ~~~p~~SPDG~~iaf~~~~~---~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 119 (281)
T d1k32a2 43 INNARFFPDGRKIAIRVMRG---SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFS 119 (281)
T ss_dssp EEEEEECTTSSEEEEEEEES---TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSST
T ss_pred ccCEEECCCCCEEEEEEeeC---CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCc
Confidence 88999999999999988643 23335689999999999999987653211 01134678999999999882110000
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCcccccccCCCCcEEE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYIL 347 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~ 347 (953)
....++.++. ++..+..... .....|++||+.++
T Consensus 120 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 154 (281)
T d1k32a2 120 -------------------------------------------SMTCLYRVENDGINFVPLNLG--PATHILFADGRRVI 154 (281)
T ss_dssp -------------------------------------------TCCEEEEEEGGGTEEEECCSC--SCSEEEEETTEEEE
T ss_pred -------------------------------------------cceeeeeecCCCceeEEecCC--ccceeeecCCCeEE
Confidence 1234556677 5555554432 23456788888888
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
+............... .....+..........++.... ....+.|++|. +++..+
T Consensus 155 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~--~~~~~~--------- 209 (281)
T d1k32a2 155 GRNTFELPHWKGYRGG-TRGKIWIEVNSGAFKKIVDMST-------------HVSSPVIVGHR--IYFITD--------- 209 (281)
T ss_dssp EESCSCCTTSTTCCST-TCCEEEEEEETTEEEEEECCSS-------------CCEEEEEETTE--EEEEEC---------
T ss_pred EeeccccceeeeeccC-CcceeeeeccccceeeccCCcc-------------ccceeeeeccc--cceecc---------
Confidence 8764432211111111 1123333334444444443321 12345666653 444411
Q ss_pred ccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEee
Q 002209 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 499 (953)
.....+||++++ ++++.++|+.... .....|||||++|+|... . +||++|++++ +.+.+.
T Consensus 210 -~~~~~~l~~~d~---~g~~~~~lt~~~~-~~~~~~SpDG~~I~f~~~---~--~l~~~d~~~g--~~~~i~ 269 (281)
T d1k32a2 210 -IDGFGQIYSTDL---DGKDLRKHTSFTD-YYPRHLNTDGRRILFSKG---G--SIYIFNPDTE--KIEKIE 269 (281)
T ss_dssp -TTSSCEEEEEET---TSCSCEECCCCCS-SCEEEEEESSSCEEEEET---T--EEEEECTTTC--CEEECC
T ss_pred -cccccceEEEeC---CCCceEEeecCCC-cccccCcCCCCEEEEEeC---C--EEEEEECCCC--CEEEec
Confidence 134568999996 8888888876532 234579999999999753 2 6999999986 445553
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.78 E-value=4.1e-18 Score=182.68 Aligned_cols=237 Identities=19% Similarity=0.167 Sum_probs=152.6
Q ss_pred CCCceEEEEEEcCCCc-EEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cC
Q 002209 635 ASLQKELIKYQRKDGV-QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RG 712 (953)
Q Consensus 635 ~~~~~~~~~~~~~dg~-~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G 712 (953)
..+..+.+++++.+|. .+.+++|+|++. .++.|+|||+|||.+..+.. .. .......++. .|
T Consensus 46 ~~v~~~~~~~~~~~g~~~i~~~~~~P~~~----~~~~Pvvv~iHGGG~~~g~~--------~~----~~~~~~~la~~~G 109 (317)
T d1lzla_ 46 DGVSLRELSAPGLDGDPEVKIRFVTPDNT----AGPVPVLLWIHGGGFAIGTA--------ES----SDPFCVEVARELG 109 (317)
T ss_dssp TTEEEEEEEECCSTTCCCEEEEEEEESSC----CSCEEEEEEECCSTTTSCCG--------GG----GHHHHHHHHHHHC
T ss_pred CCceEEEEEEecCCCCceEEEEEECCCCC----CCCCcEEEEecCcccccccc--------cc----cchHHHhHHhhcC
Confidence 4456788899988886 699999999752 34699999999985443211 11 1234445554 69
Q ss_pred cEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCCC----ccc
Q 002209 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFC 785 (953)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~ 785 (953)
|+|+.++|+.... ..+...++|+.++++|+.++ ..+|++||+|+|+|+||++++.++.+.++ ...
T Consensus 110 ~~V~~vdYrl~pe--------~~~~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~ 181 (317)
T d1lzla_ 110 FAVANVEYRLAPE--------TTFPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVA 181 (317)
T ss_dssp CEEEEECCCCTTT--------SCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCC
T ss_pred Ccccccccccccc--------ccccccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhccccccc
Confidence 9999988853322 22356678888888888654 34899999999999999999998875321 123
Q ss_pred EEEEcccCCCCCCCCcCcc-cccchhhh------hHHHHH--------------hcCcccccC-CCCCcEEEEEeCCCCC
Q 002209 786 CGIARSGAYNRTLTPFGFQ-NEDRTLWE------ATSTYV--------------EMSPFMSAN-KLKKPILLVHGEEDNN 843 (953)
Q Consensus 786 a~v~~~~~~d~~~~~~~~~-~~~~~~~~------~~~~~~--------------~~sp~~~~~-~i~~P~Li~~G~~D~~ 843 (953)
..+...+..+.......+. ......+. ....+. ..+|..... ....|+||+||+.|..
T Consensus 182 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~li~~g~~D~l 261 (317)
T d1lzla_ 182 FQFLEIPELDDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELDPL 261 (317)
T ss_dssp EEEEESCCCCTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGCSCCTTCCCEEEEEETTCTT
T ss_pred ccccccccccccccccccccccccchhhhhhhHHHHhhhccccccCCCCchhccccCchhhhhccCCCCeEEEECCCCCC
Confidence 3333333222111100000 00000000 000000 011111111 2247999999999943
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC---cccHHHHHHHHHHHHHHhcc
Q 002209 844 SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA---RESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 844 v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~---~~~~~~~~~~i~~fl~~~l~ 899 (953)
..++++++++|++.|+++++++|||++|++.. .........++++||.++|+
T Consensus 262 ----~~~~~~~~~~L~~~G~~v~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~l~r~Lr 316 (317)
T d1lzla_ 262 ----RDEGIEYALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 316 (317)
T ss_dssp ----HHHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHHHHHCCCCEEEEEECcCccCCcccCCchHHHHHHHHHHHHHHHHhC
Confidence 68899999999999999999999999998742 22344667889999999985
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.77 E-value=1.8e-18 Score=188.16 Aligned_cols=243 Identities=13% Similarity=0.028 Sum_probs=162.5
Q ss_pred cCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCc
Q 002209 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (953)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (953)
...+..+..++++.||..|.+.+|.|++. +++.|+|||+|||.|..+. .. .......++.++++||
T Consensus 74 ~~~v~~~~~~i~~~dg~~i~~~iy~P~~~----~~~~Pviv~~HGGG~~~gs--------~~--~~~~~~~~~~la~~g~ 139 (358)
T d1jkma_ 74 RDDVETSTETILGVDGNEITLHVFRPAGV----EGVLPGLVYTHGGGMTILT--------TD--NRVHRRWCTDLAAAGS 139 (358)
T ss_dssp CCCEEEEEEEEECTTSCEEEEEEEEETTC----CSCEEEEEEECCSTTTSSC--------SS--SHHHHHHHHHHHHTTC
T ss_pred CCCccEEEEEEeCCCCCEEEEEEEecCCC----CCCCCeEEEecCCeeeecc--------cc--ccccchHHHHHHhhhh
Confidence 34566788899999999999999999862 3469999999998543221 11 0011234667889999
Q ss_pred EEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHh-----CCCcccEE
Q 002209 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAH-----APHLFCCG 787 (953)
Q Consensus 714 ~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~-----~p~~~~a~ 787 (953)
+|+.++|+...+. .++..+...++|+.++++|+.++ ...|.+||+|+|.|.||++++.++.. ....+.+.
T Consensus 140 ~VvsvdYRla~~~----~pe~~~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~ 215 (358)
T d1jkma_ 140 VVVMVDFRNAWTA----EGHHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGV 215 (358)
T ss_dssp EEEEEECCCSEET----TEECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEE
T ss_pred eeeeeeecccccc----cccCCCchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCcccccc
Confidence 9999888643221 12233467899999999999875 34678899999999999999887754 12457888
Q ss_pred EEcccCCCCCCCCcCccc----------ccchh-hhhHHHH-H--------hcCccccc-------CCCCCcEEEEEeCC
Q 002209 788 IARSGAYNRTLTPFGFQN----------EDRTL-WEATSTY-V--------EMSPFMSA-------NKLKKPILLVHGEE 840 (953)
Q Consensus 788 v~~~~~~d~~~~~~~~~~----------~~~~~-~~~~~~~-~--------~~sp~~~~-------~~i~~P~Li~~G~~ 840 (953)
++.+|+.+.......+.. ..... ......+ . ..+|.... -+--.|+||++|+.
T Consensus 216 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~ 295 (358)
T d1jkma_ 216 YASIPYISGGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNEL 295 (358)
T ss_dssp EEESCCCCCCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETT
T ss_pred ccccceeccccCccchhhcccccchhcccccccchhhhhhHHhhcCCccCCccCccccccccchhhccCCCCEEEEECCC
Confidence 888887664332111000 00000 0000001 0 01121111 01135999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCC---C---cccHHHHHHHHHHHHHHhc
Q 002209 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA---A---RESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~---~---~~~~~~~~~~i~~fl~~~l 898 (953)
|.. ..++.+++++|++.|+++++++|+|++|+|. . .+..+...+.|..|+.++.
T Consensus 296 D~l----~~e~~~~~~~L~~aGv~v~~~~~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~~ 355 (358)
T d1jkma_ 296 DPL----RDEGIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 355 (358)
T ss_dssp CTT----HHHHHHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CCC----HHHHHHHHHHHHHCCCcEEEEEECCCccchhhhccccCCHHHHHHHHHHHHHHHHHH
Confidence 954 6789999999999999999999999999862 1 1233456778888887654
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=4.2e-18 Score=174.43 Aligned_cols=220 Identities=18% Similarity=0.148 Sum_probs=141.0
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
+.|++++ .| +......|.+ +.|+||++||..... ..+ ...+..|+++||+|+.
T Consensus 4 ~~~~~~l---~g--~~~~~~~p~~-------~~~~vl~lHG~~~~~-----------~~~----~~~~~~la~~G~~V~~ 56 (238)
T d1ufoa_ 4 RTERLTL---AG--LSVLARIPEA-------PKALLLALHGLQGSK-----------EHI----LALLPGYAERGFLLLA 56 (238)
T ss_dssp EEEEEEE---TT--EEEEEEEESS-------CCEEEEEECCTTCCH-----------HHH----HHTSTTTGGGTEEEEE
T ss_pred EEEEEEE---CC--EEEEecCCCC-------CCeEEEEeCCCCCCH-----------HHH----HHHHHHHHHCCCEEEE
Confidence 3555555 45 3445555643 379999999953110 001 1223457889999999
Q ss_pred cCCCCCCCCCChhhh------hhhHH----HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEE
Q 002209 718 GPTTPIIGEGDEEAN------DRFVE----QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~------~~~~~----~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (953)
+|.+ |+|.+... ..+.. ....++.++...+...+.++.++++++|+|+||++++.+++++|+ ++++
T Consensus 57 ~D~~---g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~-~~~~ 132 (238)
T d1ufoa_ 57 FDAP---RHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFR-PRGV 132 (238)
T ss_dssp CCCT---TSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEETHHHHHHHHHHHTTCC-CSCE
T ss_pred ecCC---CCCCCcccccccccchhhhhhhhhHHhHHHHHHHHhhhccccCCceEEEEEecccHHHHHHHHhcCcc-hhhe
Confidence 6664 44444211 11122 222333333334444455778899999999999999999999976 5555
Q ss_pred EEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCC-CCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCC--c
Q 002209 788 IARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK-LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA--L 864 (953)
Q Consensus 788 v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~--~ 864 (953)
++..+......... ...........+...++..+..+ .+.|+|++||++|..|| ++++.++++++++.+. .
T Consensus 133 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~ 206 (238)
T d1ufoa_ 133 LAFIGSGFPMKLPQ----GQVVEDPGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVP--LARMEKTLEALRPHYPEGR 206 (238)
T ss_dssp EEESCCSSCCCCCT----TCCCCCHHHHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTT--HHHHHHHHHHHGGGCTTCC
T ss_pred eeeeeecccccccc----ccccccccccchhhhhhhhhhhhhcCCCeEEEEcCCCCccC--HHHHHHHHHHHHhcCCCce
Confidence 55544433211111 11111122333445666655544 47899999999999999 9999999999998775 4
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 865 CRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 865 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
+++..++|+||.+. .+.++.+.+||++||.
T Consensus 207 ~~~~~~~g~gH~~~-----~~~~~~~~~f~~~~l~ 236 (238)
T d1ufoa_ 207 LARFVEEGAGHTLT-----PLMARVGLAFLEHWLE 236 (238)
T ss_dssp EEEEEETTCCSSCC-----HHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCccC-----HHHHHHHHHHHHHHhc
Confidence 78889999999875 3446778899999985
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.77 E-value=1.9e-18 Score=188.30 Aligned_cols=301 Identities=11% Similarity=0.030 Sum_probs=189.8
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCC
Q 002209 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (953)
Q Consensus 109 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~ 188 (953)
..+..++|||||++|++.+.+ .. ..|++||+.+ ++.+++... .
T Consensus 43 ~~v~~~~~spDg~~l~~~~~~-------------------------~g------~~v~v~d~~~----~~~~~~~~~--~ 85 (360)
T d1k32a3 43 LRIRYVRRGGDTKVAFIHGTR-------------------------EG------DFLGIYDYRT----GKAEKFEEN--L 85 (360)
T ss_dssp SCEEEEEECSSSEEEEEEEET-------------------------TE------EEEEEEETTT----CCEEECCCC--C
T ss_pred CCEEEEEECCCCCEEEEEEcC-------------------------CC------CEEEEEECCC----CcEEEeeCC--C
Confidence 357789999999999998874 11 1479999854 455555432 2
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+...+|||||++|++... ...++++++++++..++....... +..++|+|||++|++........
T Consensus 86 ~~v~~~~~spdg~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~spdg~~la~~~~~~~~~ 152 (360)
T d1k32a3 86 GNVFAMGVDRNGKFAVVAND---------RFEIMTVDLETGKPTVIERSREAM----ITDFTISDNSRFIAYGFPLKHGE 152 (360)
T ss_dssp CSEEEEEECTTSSEEEEEET---------TSEEEEEETTTCCEEEEEECSSSC----CCCEEECTTSCEEEEEEEECSST
T ss_pred ceEEeeeecccccccceecc---------ccccccccccccceeeeeeccccc----ccchhhccceeeeeeeccccccc
Confidence 46888999999999999663 668999999999887776544432 56899999999999873322111
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l 346 (953)
........++++++ +++...++.. .....+.|||||++|
T Consensus 153 ---------------------------------------~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l 193 (360)
T d1k32a3 153 ---------------------------------------TDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNL 193 (360)
T ss_dssp ---------------------------------------TCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEE
T ss_pred ---------------------------------------eeeccccceeeeccccCceeeecccccccccccccCCCCEE
Confidence 00013356788898 8888887776 667788999999999
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCc--------eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGI--------FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~--------~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~ 418 (953)
++.+.+. .+.+|+.... ....+... ......+.|++|++.++...
T Consensus 194 ~~~s~~~-------------~~~~~d~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~s~~~~~~~~~~- 246 (360)
T d1k32a3 194 YYLSYRS-------------LDPSPDRVVLNFSFEVVSKPFVIPLI-------------PGSPNPTKLVPRSMTSEAGE- 246 (360)
T ss_dssp EEEESCC-------------CCCEECSSSSCEECCSCBEEEEEESS-------------TTCCCGGGCCCGGGSCCCCC-
T ss_pred EEEeCCC-------------ceEcccccccceeeccccceEEEecc-------------cCccccceECCCcCcccccc-
Confidence 9988543 3445554321 11111111 12234567889887654320
Q ss_pred eccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEe
Q 002209 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (953)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 498 (953)
.+. ......++.+++ .++....+...+.....+.++.++....+..... ....|+++|+.++ +...+
T Consensus 247 -~~~------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~--~~~~~ 313 (360)
T d1k32a3 247 -YDL------NDMYKRSSPINV---DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP-EKGVLLKYDVKTR--KVTEV 313 (360)
T ss_dssp -CCC------TTGGGGCEECSC---CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCC-CCEEEEEEETTTC--CEEEE
T ss_pred -eee------cccccceeeccc---CcCceeEeeecCCCceEEEEEecCCCeeEEEecC-CCCEEEEEECCCC--eEEEe
Confidence 000 011234666654 5556666655554444455555544322211111 2247888888875 33333
Q ss_pred ecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEec
Q 002209 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~ 569 (953)
... +.. ++|||||++|++...+. .|++||+++++.++...
T Consensus 314 ~~~----v~~------~~~SpDG~~l~~~~~Dg---------------------~i~v~d~~~~~~~~~~~ 353 (360)
T d1k32a3 314 KNN----LTD------LRLSADRKTVMVRKDDG---------------------KIYTFPLEKPEDERTVE 353 (360)
T ss_dssp EEE----EEE------EEECTTSCEEEEEETTS---------------------CEEEEESSCTTSCEECC
T ss_pred cCC----cCE------EEECCCCCEEEEEECCC---------------------eEEEEECCCCCcceEEE
Confidence 321 222 78999999999887322 39999998887655443
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.77 E-value=3.5e-18 Score=187.27 Aligned_cols=248 Identities=15% Similarity=0.159 Sum_probs=161.4
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
..+.+.++.+||++|.+.+|+|++ .+++|+||+.|+...... .................+.|+++||+|+.
T Consensus 23 ~~~~v~i~~rDG~~L~~~v~~P~~-----~~~~P~il~~~pYg~~~~----~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~ 93 (381)
T d1mpxa2 23 IKREVMIPMRDGVKLHTVIVLPKG-----AKNAPIVLTRTPYDASGR----TERLASPHMKDLLSAGDDVFVEGGYIRVF 93 (381)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETT-----CCSEEEEEEEESSCHHHH----TCSSCCSSHHHHSCGGGHHHHHTTCEEEE
T ss_pred eEEEEEEECCCCCEEEEEEEEeCC-----CCCccEEEEEccCCCCCc----ccccccccccccchhHHHHHHhCCCEEEE
Confidence 346789999999999999999976 346999999986210000 00000000000111234679999999999
Q ss_pred cCCCCCCCCCChhhh-----------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccE
Q 002209 718 GPTTPIIGEGDEEAN-----------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~-----------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (953)
+|.+|. |.|.+. .......+.|..++++|+.++..++..||+++|+|+||++++.+|+..|+.++|
T Consensus 94 ~d~RG~---g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a 170 (381)
T d1mpxa2 94 QDVRGK---YGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKV 170 (381)
T ss_dssp EECTTS---TTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEE
T ss_pred EecCcc---CCCCCceeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccce
Confidence 776554 333221 111234689999999999999878889999999999999999999999999999
Q ss_pred EEEcccCCCCCCCCcCccc-----c---------------------cchhhhh---------------------------
Q 002209 787 GIARSGAYNRTLTPFGFQN-----E---------------------DRTLWEA--------------------------- 813 (953)
Q Consensus 787 ~v~~~~~~d~~~~~~~~~~-----~---------------------~~~~~~~--------------------------- 813 (953)
+|+.+|+.|.......+.. . ....+..
T Consensus 171 ~v~~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (381)
T d1mpxa2 171 AVPESPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTE 250 (381)
T ss_dssp EEEESCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHH
T ss_pred eeeeccccccccccccccCchhhhccHHHHHhhhhhccccchhhhhhhhhHHHHHhcccccccchhhccccchHHHHHhh
Confidence 9999998875322111000 0 0000000
Q ss_pred ----HHHHHhcCccc--ccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHh---CCCcEEEEEeCCCCccCC------
Q 002209 814 ----TSTYVEMSPFM--SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG---HGALCRLVILPFESHGYA------ 878 (953)
Q Consensus 814 ----~~~~~~~sp~~--~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~---~g~~~~~~~~~~~~H~~~------ 878 (953)
...+...++.. ...++++|+|+++|..|..+. ..+...++.++. .+.+.++++-|. +|...
T Consensus 251 ~~~~d~~w~~~s~~~~~~~~~i~vP~l~i~G~~d~~~~---~~~~~~~~~~~~~~~~~~~~~LviGPw-~H~~~~~~~~~ 326 (381)
T d1mpxa2 251 HAAYDAFWQEQALDKVMARTPLKVPTMWLQGLWDQEDM---WGAIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSA 326 (381)
T ss_dssp TCSSCHHHHTTCHHHHHHTSCCCSCEEEEEETTCSSCS---SHHHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSE
T ss_pred CCCccchhhhcCchhhhhhccccCceEEEeccccCCcc---ccHHHHHHHHHHhccccCCceEEEecC-cCCCCccCCCc
Confidence 01122233332 345689999999999998764 445666666653 457889999997 77421
Q ss_pred -------CcccHHHHHHHHHHHHHHhccCC
Q 002209 879 -------ARESIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 879 -------~~~~~~~~~~~i~~fl~~~l~~~ 901 (953)
...........+++||++||+..
T Consensus 327 ~~~~~~~~~~~~~~~~~~~l~wFD~~LKg~ 356 (381)
T d1mpxa2 327 LGALNFEGDTARQFRHDVLRPFFDQYLVDG 356 (381)
T ss_dssp ETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred CCccccccchhhhhHHHHHHHHHHHHhCCC
Confidence 11122334556789999999864
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.77 E-value=1.7e-17 Score=165.17 Aligned_cols=190 Identities=15% Similarity=0.095 Sum_probs=136.8
Q ss_pred EEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChh----
Q 002209 655 TLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE---- 730 (953)
Q Consensus 655 ~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~---- 730 (953)
.++.|.. +.+.|+||++||+.. ....+ ..... ....++.|+.++.....+.+...
T Consensus 4 ~i~~~~~-----~~~~P~vi~lHG~g~-----------~~~~~----~~~~~-~l~~~~~vv~p~~~~~~~~~~~~~~~~ 62 (202)
T d2h1ia1 4 HVFQKGK-----DTSKPVLLLLHGTGG-----------NELDL----LPLAE-IVDSEASVLSVRGNVLENGMPRFFRRL 62 (202)
T ss_dssp EEEECCS-----CTTSCEEEEECCTTC-----------CTTTT----HHHHH-HHHTTSCEEEECCSEEETTEEESSCEE
T ss_pred ccCCCCC-----CCCCCEEEEECCCCC-----------CHHHH----HHHHH-HhccCCceeeecccccCCCCccccccC
Confidence 3566643 345899999999521 11112 12333 34468888886542211111110
Q ss_pred h----hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccc
Q 002209 731 A----NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE 806 (953)
Q Consensus 731 ~----~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~ 806 (953)
. .........+++...++++.++..+|+++|+++|+|+||.+++.++.++|+.+.++++.+|.....
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~--------- 133 (202)
T d2h1ia1 63 AEGIFDEEDLIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRR--------- 133 (202)
T ss_dssp ETTEECHHHHHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCS---------
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCcc---------
Confidence 0 111234456778888888888888999999999999999999999999999999999998864321
Q ss_pred cchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHH
Q 002209 807 DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886 (953)
Q Consensus 807 ~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~ 886 (953)
+.........|++++||++|.+|| ++++++++++|+..|.+++++.||+ ||.+. ...
T Consensus 134 ---------------~~~~~~~~~~~~~i~~G~~D~~vp--~~~~~~~~~~l~~~g~~~~~~~~~g-gH~~~-----~~~ 190 (202)
T d2h1ia1 134 ---------------GMQLANLAGKSVFIAAGTNDPICS--SAESEELKVLLENANANVTMHWENR-GHQLT-----MGE 190 (202)
T ss_dssp ---------------SCCCCCCTTCEEEEEEESSCSSSC--HHHHHHHHHHHHTTTCEEEEEEESS-TTSCC-----HHH
T ss_pred ---------------cccccccccchhhcccccCCCccC--HHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHH
Confidence 112223456899999999999999 9999999999999999999999997 89874 345
Q ss_pred HHHHHHHHHHh
Q 002209 887 LWETDRWLQKY 897 (953)
Q Consensus 887 ~~~i~~fl~~~ 897 (953)
++.+.+||++.
T Consensus 191 ~~~~~~wl~k~ 201 (202)
T d2h1ia1 191 VEKAKEWYDKA 201 (202)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77899999875
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.76 E-value=4.4e-18 Score=175.32 Aligned_cols=195 Identities=16% Similarity=0.159 Sum_probs=143.4
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCC
Q 002209 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT 720 (953)
Q Consensus 641 ~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~ 720 (953)
.+.|-..+.. ...||+|++ .+.|+||++|||+|..++. ..+ ...+..|+++||+|+.++|
T Consensus 41 dv~Yg~~~~~--~lDiy~P~~------~~~P~vv~iHGG~w~~g~~--------~~~----~~~a~~l~~~G~~Vv~~~Y 100 (261)
T d2pbla1 41 NLSYGEGDRH--KFDLFLPEG------TPVGLFVFVHGGYWMAFDK--------SSW----SHLAVGALSKGWAVAMPSY 100 (261)
T ss_dssp EEESSSSTTC--EEEEECCSS------SCSEEEEEECCSTTTSCCG--------GGC----GGGGHHHHHTTEEEEEECC
T ss_pred CcCCCCCcCe--EEEEeccCC------CCCCeEEEECCCCCccCCh--------hHh----hhHHHHHhcCCceeecccc
Confidence 4444333333 345888864 2589999999997654321 111 1235678999999999888
Q ss_pred CCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC------CcccEEEEcccCC
Q 002209 721 TPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP------HLFCCGIARSGAY 794 (953)
Q Consensus 721 ~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p------~~~~a~v~~~~~~ 794 (953)
+-.. ...+...++|+.++++|+.++. ++||+|+|||+||+++++++.... ..+++++.++|++
T Consensus 101 Rl~p--------~~~~p~~~~d~~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (261)
T d2pbla1 101 ELCP--------EVRISEITQQISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLS 169 (261)
T ss_dssp CCTT--------TSCHHHHHHHHHHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCC
T ss_pred cccc--------cccCchhHHHHHHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhcccccc
Confidence 6332 2235778999999999998874 479999999999999988775532 2478999999988
Q ss_pred CCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 002209 795 NRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874 (953)
Q Consensus 795 d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 874 (953)
+...... .........+.+.+...||+.++.+..+|+||+||++|..++ ..++++++++++ ++.+++|+++
T Consensus 170 ~~~~~~~--~~~~~~~~~~~~~~~~~SP~~~~~~~~~P~li~~G~~D~~~~--~~qs~~~~~~l~-----~~~~~~~~~~ 240 (261)
T d2pbla1 170 DLRPLLR--TSMNEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAERPAF--LDQAIWLVEAWD-----ADHVIAFEKH 240 (261)
T ss_dssp CCGGGGG--STTHHHHCCCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHH--HHHHHHHHHHHT-----CEEEEETTCC
T ss_pred ccchhhh--hhhcccccCCHHHHHHhCchhhcccCCCeEEEEEecCCCchH--HHHHHHHHHHhC-----CCceEeCCCC
Confidence 7543221 111222334567778899999999999999999999999877 899999999985 3678899999
Q ss_pred c
Q 002209 875 H 875 (953)
Q Consensus 875 H 875 (953)
|
T Consensus 241 H 241 (261)
T d2pbla1 241 H 241 (261)
T ss_dssp T
T ss_pred c
Confidence 9
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.76 E-value=4.2e-18 Score=181.60 Aligned_cols=225 Identities=17% Similarity=0.098 Sum_probs=154.3
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCcEEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAIL 716 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~ 716 (953)
.++.++++..+| .+.+.+|.|+. +.|+|||+|||.+..+ +...+ ......++ +.||+|+
T Consensus 55 ~~~~~~i~~~~g-~i~~~iy~P~~-------~~P~il~iHGGg~~~g--------~~~~~----~~~~~~l~~~~g~~Vv 114 (311)
T d1jjia_ 55 RVEDRTIKGRNG-DIRVRVYQQKP-------DSPVLVYYHGGGFVIC--------SIESH----DALCRRIARLSNSTVV 114 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEEESSS-------SEEEEEEECCSTTTSC--------CTGGG----HHHHHHHHHHHTSEEE
T ss_pred eEEEEEEeCCCC-cEEEEEEcCCC-------CceEEEEEcCCCCccC--------Chhhh----hhhhhhhhhcCCcEEE
Confidence 467788888777 79999999953 3699999999865432 22111 23344554 4699999
Q ss_pred EcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC----CCcccEEEE
Q 002209 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA----PHLFCCGIA 789 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~----p~~~~a~v~ 789 (953)
.++|+...++ .++..++|+.++++|+.++ ..+|++||+|+|+|+||++++.++... .....+.++
T Consensus 115 ~v~Yrlap~~--------~~p~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l 186 (311)
T d1jjia_ 115 SVDYRLAPEH--------KFPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQIL 186 (311)
T ss_dssp EEECCCTTTS--------CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred Eecccccccc--------ccchhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeee
Confidence 9888644332 3456788999999998775 458899999999999999998776532 235788888
Q ss_pred cccCCCCCCCCcCccc-------ccchhhhhHHH----------HHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHH
Q 002209 790 RSGAYNRTLTPFGFQN-------EDRTLWEATST----------YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSD 852 (953)
Q Consensus 790 ~~~~~d~~~~~~~~~~-------~~~~~~~~~~~----------~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~ 852 (953)
++|..+.......... ........... ....+|+....+...|+||+||+.|.. ..++.
T Consensus 187 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~l----~d~~~ 262 (311)
T d1jjia_ 187 IYPVVNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIITAEYDPL----RDEGE 262 (311)
T ss_dssp ESCCCCSSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTCCCEEEEEEEECTT----HHHHH
T ss_pred ecceeeeccCcccccccccccccccHHHhhhhhhhcccccccccccccchhhcccccCCCEEEEEcCCCCC----hHHHH
Confidence 8888774432111000 00000000000 011356655555567999999999954 57899
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCc----ccHHHHHHHHHHHH
Q 002209 853 RFFNALKGHGALCRLVILPFESHGYAAR----ESIMHVLWETDRWL 894 (953)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~fl 894 (953)
+++++|++.|+++++++|+|++|+|... +...++++++.+||
T Consensus 263 ~~~~~L~~~Gv~v~~~~~~g~~H~F~~~~~~~~~a~~a~~~i~~fl 308 (311)
T d1jjia_ 263 VFGQMLRRAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALL 308 (311)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEECCCCCccccCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999987422 23456677777776
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.76 E-value=2.6e-17 Score=181.81 Aligned_cols=195 Identities=20% Similarity=0.202 Sum_probs=142.8
Q ss_pred chHHHHHHHcCcEEEEcCCCCCCCCCChhhhh-hhHHHHHHHHHHHHHHHHHcCCCCC--------------CcEEEEEe
Q 002209 702 STSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVVRRGVAHP--------------SKIAVGGH 766 (953)
Q Consensus 702 ~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~~~~~l~~~~~~d~--------------~~i~l~G~ 766 (953)
.....+|+.+||+|+..|. +|.|.|.+.. .+...+.+|..++|+||..+..++. .||+++|.
T Consensus 126 ~~~~~~~~~~GYavv~~D~---RG~g~S~G~~~~~~~~e~~D~~~~IeWl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G~ 202 (405)
T d1lnsa3 126 YSLNDYFLTRGFASIYVAG---VGTRSSDGFQTSGDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGK 202 (405)
T ss_dssp CHHHHHHHTTTCEEEEECC---TTSTTSCSCCCTTSHHHHHHHHHHHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEEE
T ss_pred ccchHHHHhCCCEEEEECC---CCCCCCCCccccCChhhhhhHHHHHHHHHhcccccccccccccccccccCCeeEEEec
Confidence 3456789999999999555 5666665532 3346788999999999986543222 48999999
Q ss_pred ChHHHHHHHHHHhCCCcccEEEEcccCCCCCC---------CCcCccccc----------c----h--------------
Q 002209 767 SYGAFMTANLLAHAPHLFCCGIARSGAYNRTL---------TPFGFQNED----------R----T-------------- 809 (953)
Q Consensus 767 S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~---------~~~~~~~~~----------~----~-------------- 809 (953)
||||++++.+|+..|+.++|+|+.+++.|+.. ....+.... . .
T Consensus 203 SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (405)
T d1lnsa3 203 SYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLA 282 (405)
T ss_dssp THHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCccccccchhhhhhhhhhccccccccccchhhhchhhhhhccc
Confidence 99999999999999889999999998876310 000110000 0 0
Q ss_pred ---------hhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc
Q 002209 810 ---------LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880 (953)
Q Consensus 810 ---------~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 880 (953)
.....+.+.+.+++..+.+|++|+|+++|..|..|+ +.++.++|++++. +.+.++++.|+ +|.....
T Consensus 283 ~~~~~~~~~~~~~d~~w~~~s~~~~~~~I~vP~L~i~Gw~D~~v~--~~~~~~~y~al~~-~~~~~Lilgpw-~H~~~~~ 358 (405)
T d1lnsa3 283 EMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVT--PEQAYNFWKALPE-GHAKHAFLHRG-AHIYMNS 358 (405)
T ss_dssp HHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSC--THHHHHHHHHSCT-TCCEEEEEESC-SSCCCTT
T ss_pred hhhhhhhhccccchhhhhhcChhhhhhcCCCCEEEEEeccCCCCC--HHHHHHHHHHHHh-CCCcEEEEeCC-CCCCCcc
Confidence 000123456678889999999999999999999998 8999999999964 56789988886 8975433
Q ss_pred ccHHHHHHHHHHHHHHhccCCCC
Q 002209 881 ESIMHVLWETDRWLQKYCVSNTA 903 (953)
Q Consensus 881 ~~~~~~~~~i~~fl~~~l~~~~~ 903 (953)
.....+.+.+++||++||+..+.
T Consensus 359 ~~~~d~~~~~~~wFD~~LkG~~n 381 (405)
T d1lnsa3 359 WQSIDFSETINAYFVAKLLDRDL 381 (405)
T ss_dssp BSSCCHHHHHHHHHHHHHTTCCC
T ss_pred cccchHHHHHHHHHHHHhCCCCC
Confidence 33345577889999999987543
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.75 E-value=5.4e-17 Score=167.95 Aligned_cols=208 Identities=18% Similarity=0.113 Sum_probs=134.1
Q ss_pred CCceEEEEEEcC-CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcC--
Q 002209 636 SLQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG-- 712 (953)
Q Consensus 636 ~~~~~~~~~~~~-dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G-- 712 (953)
...++.++|.+. +|.++.+++|+|+++++++ ++|+|+++||+....... .................+
T Consensus 19 ~g~~~~~~~~S~~~g~~~~~~v~lP~~y~~~~--~~Pvvv~lHG~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 88 (255)
T d1jjfa_ 19 RGQVVNISYFSTATNSTRPARVYLPPGYSKDK--KYSVLYLLHGIGGSENDW--------FEGGGRANVIADNLIAEGKI 88 (255)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEECTTCCTTS--CBCEEEEECCTTCCTTTT--------TTTTTCHHHHHHHHHHTTSS
T ss_pred ceEEEEEEEEecCCCCEEEEEEEeCCCCCCCC--CCcEEEEEecCCCChHHh--------hhhhHHHHHHHHHHHhhccC
Confidence 346788888764 6889999999999998766 499999999964322111 111111111122233332
Q ss_pred --cEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHc--CCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEE
Q 002209 713 --FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR--GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (953)
Q Consensus 713 --~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~--~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (953)
+.+......... .........+....+.++ +.++.++ ..+|+++++++|+|+||++++.++.++|++|++++
T Consensus 89 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l---i~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~ 164 (255)
T d1jjfa_ 89 KPLIIVTPNTNAAG-PGIADGYENFTKDLLNSL---IPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIG 164 (255)
T ss_dssp CCCEEEEECCCCCC-TTCSCHHHHHHHHHHHTH---HHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEE
T ss_pred Ccceeeeccccccc-ccccccccchHHHHHHHH---HHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEE
Confidence 344443221111 111111122233444444 4444443 34788999999999999999999999999999999
Q ss_pred EcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002209 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (953)
Q Consensus 789 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (953)
+++|..+...... ....+.........|++|.||+.|..++ .+++++++|+++|+++++.
T Consensus 165 ~~sg~~~~~~~~~----------------~~~~~~~~~~~~~~~~~i~~G~~D~~~~----~~~~~~~~L~~~g~~~~~~ 224 (255)
T d1jjfa_ 165 PISAAPNTYPNER----------------LFPDGGKAAREKLKLLFIACGTNDSLIG----FGQRVHEYCVANNINHVYW 224 (255)
T ss_dssp EESCCTTSCCHHH----------------HCTTTTHHHHHHCSEEEEEEETTCTTHH----HHHHHHHHHHHTTCCCEEE
T ss_pred EEccCcCCccccc----------------ccccHHHHhhccCCcceEEeCCCCCCch----HHHHHHHHHHHCCCCEEEE
Confidence 9998654321100 0011112222345799999999998754 5778999999999999999
Q ss_pred EeCCCCccC
Q 002209 869 ILPFESHGY 877 (953)
Q Consensus 869 ~~~~~~H~~ 877 (953)
++++++|.+
T Consensus 225 ~~~~ggH~~ 233 (255)
T d1jjfa_ 225 LIQGGGHDF 233 (255)
T ss_dssp EETTCCSSH
T ss_pred EECCCCcCH
Confidence 999999976
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=5.2e-16 Score=167.74 Aligned_cols=270 Identities=10% Similarity=0.010 Sum_probs=175.1
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCC
Q 002209 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (953)
Q Consensus 108 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~ 187 (953)
...+..++|||||++||..+++ .|.|||+...+.......+....+
T Consensus 51 ~~~V~~v~fs~~g~~latg~dg----------------------------------~V~iWd~~~~~~~~~~~~~~~~~h 96 (337)
T d1gxra_ 51 GEVVCAVTISNPTRHVYTGGKG----------------------------------CVKVWDISHPGNKSPVSQLDCLNR 96 (337)
T ss_dssp SSCCCEEEECSSSSEEEEECBS----------------------------------EEEEEETTSTTCCSCSEEEECSCT
T ss_pred CCcEEEEEECCCCCEEEEEECC----------------------------------EEEEEEccCCcccceeEEeeecCC
Confidence 3468889999999999987642 578999965332222222221222
Q ss_pred CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecc--cCCCccccccccceEEecCCeEEEEEecCC
Q 002209 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLF--QSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (953)
Q Consensus 188 ~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt--~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 265 (953)
...+...+|||||+.|+.... ...|.++|+.....+... ..... .+....|+||+..++...
T Consensus 97 ~~~I~~v~~s~dg~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~s~~--- 160 (337)
T d1gxra_ 97 DNYIRSCKLLPDGCTLIVGGE---------ASTLSIWDLAAPTPRIKAELTSSAP----ACYALAISPDSKVCFSCC--- 160 (337)
T ss_dssp TSBEEEEEECTTSSEEEEEES---------SSEEEEEECCCC--EEEEEEECSSS----CEEEEEECTTSSEEEEEE---
T ss_pred CCcEEEEEEcCCCCEEEEeec---------ccccccccccccccccccccccccc----cccccccccccccccccc---
Confidence 236889999999999887542 457777787654432211 11111 156788999999888651
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC--CcccccccCCC
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPD 342 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpD 342 (953)
....+..+++ +++....... ..+..++|+++
T Consensus 161 ----------------------------------------------~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 194 (337)
T d1gxra_ 161 ----------------------------------------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND 194 (337)
T ss_dssp ----------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred ----------------------------------------------cccccccccccccccccccccccccccccccccc
Confidence 2245667787 6654444332 66788999999
Q ss_pred CcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 343 G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
|+.++....+ +.+.+||+..+......... ..+..++|+|+++.++..
T Consensus 195 ~~~~~~~~~d-------------~~v~i~d~~~~~~~~~~~~~-------------~~i~~l~~~~~~~~l~~~------ 242 (337)
T d1gxra_ 195 GTKLWTGGLD-------------NTVRSWDLREGRQLQQHDFT-------------SQIFSLGYCPTGEWLAVG------ 242 (337)
T ss_dssp SSEEEEEETT-------------SEEEEEETTTTEEEEEEECS-------------SCEEEEEECTTSSEEEEE------
T ss_pred cccccccccc-------------ccccccccccceeecccccc-------------cceEEEEEccccccccee------
Confidence 9999988744 38999999865433222211 234578999999877665
Q ss_pred CCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCC
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 502 (953)
...+.+.++++ ..++......+...+..+.|+|||+.|+..+.++ .|.+++..++ +...... .
T Consensus 243 -------~~d~~i~i~d~---~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg----~i~iwd~~~~--~~~~~~~-~ 305 (337)
T d1gxra_ 243 -------MESSNVEVLHV---NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN----LLNAWRTPYG--ASIFQSK-E 305 (337)
T ss_dssp -------ETTSCEEEEET---TSSCEEEECCCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTC--CEEEEEE-C
T ss_pred -------ccccccccccc---cccccccccccccccceEEECCCCCEEEEEeCCC----eEEEEECCCC--CEEEEcc-C
Confidence 34567889986 4445444555566678899999999988766443 4666677664 3232222 2
Q ss_pred CccccCCCCCCCeEeccCCCEEEEEe
Q 002209 503 SEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 503 ~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
...+.. +.|||||++|+...
T Consensus 306 ~~~v~~------~~~s~d~~~l~t~s 325 (337)
T d1gxra_ 306 SSSVLS------CDISVDDKYIVTGS 325 (337)
T ss_dssp SSCEEE------EEECTTSCEEEEEE
T ss_pred CCCEEE------EEEeCCCCEEEEEe
Confidence 222333 78999999988765
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.73 E-value=2.2e-17 Score=176.23 Aligned_cols=233 Identities=17% Similarity=0.132 Sum_probs=151.9
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcC-cEE
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG-FAI 715 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G-~~V 715 (953)
..++.+++.. +|.++.+.+|+|++. ++++|+|||+|||.+..+. ... .......++.+| +.|
T Consensus 44 ~~~~~~~~~~-~g~~i~~~~y~P~~~----~~~~Pvvv~iHGGg~~~g~--------~~~----~~~~~~~~a~~~~~~v 106 (308)
T d1u4na_ 44 AEVREFDMDL-PGRTLKVRMYRPEGV----EPPYPALVYYHGGGWVVGD--------LET----HDPVCRVLAKDGRAVV 106 (308)
T ss_dssp SEEEEEEEEE-TTEEEEEEEEECTTC----CSSEEEEEEECCSTTTSCC--------TTT----THHHHHHHHHHHTSEE
T ss_pred CcEEEEEEec-CCceEEEEEEecccc----CCCCCEEEEEecCeeeeec--------ccc----ccchhhhhhhcccccc
Confidence 3466777775 788999999999864 2359999999998654321 111 123455666665 567
Q ss_pred EEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCCC----cccEEE
Q 002209 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGI 788 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~a~v 788 (953)
+.++|+-. +...+...++|+..+++|+.++ ..+|++||+|+|+|+||++++.++....+ .+.+..
T Consensus 107 ~~v~Yrl~--------p~~~~p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~ 178 (308)
T d1u4na_ 107 FSVDYRLA--------PEHKFPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQL 178 (308)
T ss_dssp EEECCCCT--------TTSCTTHHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEE
T ss_pred cccccccc--------cccccccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCccccc
Confidence 77777422 2223466788999999999875 35899999999999999999988875432 345555
Q ss_pred EcccCCCCCCCCcCcc--c----ccchhhhh---HHHH---------HhcCcccccCCC-CCcEEEEEeCCCCCCCCchH
Q 002209 789 ARSGAYNRTLTPFGFQ--N----EDRTLWEA---TSTY---------VEMSPFMSANKL-KKPILLVHGEEDNNSGTLTM 849 (953)
Q Consensus 789 ~~~~~~d~~~~~~~~~--~----~~~~~~~~---~~~~---------~~~sp~~~~~~i-~~P~Li~~G~~D~~v~~~~~ 849 (953)
..++..+......... . ........ ...+ ...++....... ..|+||+||+.|.. ..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~d~~~~Pp~li~~g~~D~l----~~ 254 (308)
T d1u4na_ 179 LIYPSTGYDPAHPPASIEENAEGYLLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPL----RD 254 (308)
T ss_dssp EESCCCCCCTTSCCHHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTCCCEEEEEEEECTT----HH
T ss_pred ccccccccccccccchhhhccccccccchhhhhhhhcccCccccccchhhhhhhchhhcCCCCeeEEecCcCCc----hH
Confidence 5655544222111000 0 00000000 0000 011222222222 25899999999954 57
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHhc
Q 002209 850 QSDRFFNALKGHGALCRLVILPFESHGYAA----RESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 850 ~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~fl~~~l 898 (953)
++..++++|++.|+++++++|||++|+|.. .......++.+.+||++.|
T Consensus 255 ~~~~~~~~L~~~G~~v~~~~~~g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 255 VGKLYAEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999998742 2234578888999998876
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.72 E-value=7.4e-17 Score=177.15 Aligned_cols=242 Identities=15% Similarity=0.114 Sum_probs=152.4
Q ss_pred CCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEE
Q 002209 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (953)
Q Consensus 636 ~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (953)
.++.|+..+++.||..|..+.+........+.++.|+||++||.+..+..+..++ .....+..|+++||.|
T Consensus 24 ~y~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~~~~~~~~---------~~~sla~~L~~~Gy~V 94 (377)
T d1k8qa_ 24 GYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNL---------PNNSLAFILADAGYDV 94 (377)
T ss_dssp TCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSC---------TTTCHHHHHHHTTCEE
T ss_pred CCCceEEEEEcCCCCEEEEEEecCCCCCCccCCCCCeEEEECCCccchhHHhhcC---------ccchHHHHHHHCCCEE
Confidence 4567889999999988877644221111223345799999999653322111000 0123567899999999
Q ss_pred EEcCCCCCCCCCChhhhh------------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc
Q 002209 716 LGGPTTPIIGEGDEEAND------------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL 783 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~------------~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~ 783 (953)
++ .|.+|+|.+..+. .+......|+.++++++.+... .+++.++||||||.+++.++..+|+.
T Consensus 95 ~~---~D~rG~G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~g--~~~v~lvGhS~GG~ia~~~a~~~p~~ 169 (377)
T d1k8qa_ 95 WL---GNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTG--QDKLHYVGHSQGTTIGFIAFSTNPKL 169 (377)
T ss_dssp EE---CCCTTSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHHC--CSCEEEEEETHHHHHHHHHHHHCHHH
T ss_pred EE---EcCCCCCCCCCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHHcC--CCCEEEEEecchHHHHHHHHHhhhhh
Confidence 99 5557777774321 1234557799999999877632 36899999999999999999999987
Q ss_pred ccEEEEcc---cCCCCCCCCc--C-------------------ccc-------------c--c--------------chh
Q 002209 784 FCCGIARS---GAYNRTLTPF--G-------------------FQN-------------E--D--------------RTL 810 (953)
Q Consensus 784 ~~a~v~~~---~~~d~~~~~~--~-------------------~~~-------------~--~--------------~~~ 810 (953)
++.+++.. +......... . ... . . ...
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (377)
T d1k8qa_ 170 AKRIKTFYALAPVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTM 249 (377)
T ss_dssp HTTEEEEEEESCCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGG
T ss_pred hhhceeEeeccccccccchhhHHHHHHhcchhhhhhhhhhhhccchhHHHHhhhhhhcchhhhhHHHHhhhhhhcCCCcc
Confidence 66555433 2211000000 0 000 0 0 000
Q ss_pred -h--hhHHHHHh-----------------------------------------cCcccccCCCCCcEEEEEeCCCCCCCC
Q 002209 811 -W--EATSTYVE-----------------------------------------MSPFMSANKLKKPILLVHGEEDNNSGT 846 (953)
Q Consensus 811 -~--~~~~~~~~-----------------------------------------~sp~~~~~~i~~P~Li~~G~~D~~v~~ 846 (953)
+ .....+.. ..+...+.++++|+|+++|+.|.+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~vPvL~i~G~~D~~~~- 328 (377)
T d1k8qa_ 250 NLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLAD- 328 (377)
T ss_dssp GSCGGGHHHHHTTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSC-
T ss_pred cccHHHhhhhhhcccccchHHHHHHHHHHHhcCcchhccchhhhhhhhhhcccCchhhhHhhCCCCEEEEEeCCCCccC-
Confidence 0 00000000 01122356789999999999999998
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHH
Q 002209 847 LTMQSDRFFNALKGHGALCRLVILPFESHG--YAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~fl~~ 896 (953)
++..+++.+.++. .+++++++++||. +...+..+.++..|++||++
T Consensus 329 -~~~~~~l~~~lp~---~~~~~~i~~~GH~d~~~~~~a~~~v~~~I~~fl~~ 376 (377)
T d1k8qa_ 329 -PHDVDLLLSKLPN---LIYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGT 376 (377)
T ss_dssp -HHHHHHHHTTCTT---EEEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHT
T ss_pred -HHHHHHHHHHCCC---CeEEEEeCCCCCcchhhccchHHHHHHHHHHHHhc
Confidence 8888877766643 3678899999996 22345577889999999974
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.71 E-value=3.3e-17 Score=168.42 Aligned_cols=228 Identities=11% Similarity=-0.003 Sum_probs=143.8
Q ss_pred cCCCceEEEEEEcC-CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcC
Q 002209 634 LASLQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG 712 (953)
Q Consensus 634 ~~~~~~~~~~~~~~-dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G 712 (953)
....+++.+++.+. .|.++.+++|+|+++++. ++|+||++||+++... . ........+.++|
T Consensus 10 ~~~~~~~~~~~~S~~lg~~~~~~v~~P~~~~~~---~~Pvvv~lhG~~~~~~-------------~-~~~~~l~~l~~~~ 72 (246)
T d3c8da2 10 APEIPAKEIIWKSERLKNSRRVWIFTTGDVTAE---ERPLAVLLDGEFWAQS-------------M-PVWPVLTSLTHRQ 72 (246)
T ss_dssp CCSSCCEEEEEEETTTTEEEEEEEEEC-----C---CCCEEEESSHHHHHHT-------------S-CCHHHHHHHHHTT
T ss_pred CCCCCcEEEEEECCCCCCEEEEEEEECCCCCCC---CCCEEEEeCCcchhcc-------------C-cHHHHHHHHHHhC
Confidence 33456778888875 488999999999987542 4999999999642210 0 0112344566655
Q ss_pred ----cEEEEcCCCCCCCCCCh-hhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEE
Q 002209 713 ----FAILGGPTTPIIGEGDE-EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (953)
Q Consensus 713 ----~~V~~~~~~~~~G~G~~-~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (953)
++++.++.......... .....+.....+++...++... ...+|+++++|+|+||||++|+.++.++|++|+++
T Consensus 73 ~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~v~~~~-~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a~ 151 (246)
T d3c8da2 73 QLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVIA-PFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCV 151 (246)
T ss_dssp SSCSCEEEEECCCSHHHHHHHSSSCHHHHHHHHHTHHHHHHHHS-CCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEE
T ss_pred CCCceEEeecccccccccccccCccHHHHHHHHHHhhhHHHHhc-ccccCccceEEEecCchhHHHhhhhccCCchhcEE
Confidence 44554333110000000 0012233333344444333321 23468899999999999999999999999999999
Q ss_pred EEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEE
Q 002209 788 IARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRL 867 (953)
Q Consensus 788 v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~ 867 (953)
++++|.++....... ....+....+.....+...|+++.+|+.|..+ ..++++|+++|+++|+++++
T Consensus 152 ~~~sg~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~G~~D~~~---~~~~~~l~~~L~~~g~~~~~ 218 (246)
T d3c8da2 152 LSQSGSYWWPHRGGQ----------QEGVLLEKLKAGEVSAEGLRIVLEAGIREPMI---MRANQALYAQLHPIKESIFW 218 (246)
T ss_dssp EEESCCTTTTCTTSS----------SCCHHHHHHHTTSSCCCSCEEEEEEESSCHHH---HHHHHHHHHHTGGGTTSEEE
T ss_pred EcCCcccccccCCcc----------chHHHHHHhhhhhhhccCCCeEEEecCCCcch---hHHHHHHHHHHHHCCCCEEE
Confidence 999998764322111 11112333455666777899999999999865 57889999999999999999
Q ss_pred EEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 868 VILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 868 ~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
+++|| ||.+. .+...+...+.||-+
T Consensus 219 ~~~~G-gH~~~---~W~~~l~~~l~~l~~ 243 (246)
T d3c8da2 219 RQVDG-GHDAL---CWRGGLMQGLIDLWQ 243 (246)
T ss_dssp EEESC-CSCHH---HHHHHHHHHHHHHHG
T ss_pred EEeCC-CCChH---HHHHHHHHHHHHHHH
Confidence 99998 89762 234444445555544
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=2.8e-17 Score=171.23 Aligned_cols=207 Identities=12% Similarity=0.049 Sum_probs=142.6
Q ss_pred CceEEEEEEcCCCc-EEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEE
Q 002209 637 LQKELIKYQRKDGV-QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (953)
Q Consensus 637 ~~~~~~~~~~~dg~-~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (953)
...+.++|++.+|. ++.+++++|+++++++ ++|+|+++||++.... . ......+..+.+|++|
T Consensus 11 ~~~~~~~~~s~dg~~~~~~~v~~P~~~~~~~--~yPvi~~lhG~~~~~~------------~--~~~~~~~~~~~~~~~v 74 (265)
T d2gzsa1 11 YHFSATSFDSVDGTRHYRVWTAVPNTTAPAS--GYPILYMLDGNAVMDR------------L--DDELLKQLSEKTPPVI 74 (265)
T ss_dssp EEEEEEEEECTTSSCEEEEEEEEESSCCCTT--CEEEEEESSHHHHHHH------------C--CHHHHHHHTTSCCCEE
T ss_pred ceeEEEEEEcCCCCEEEEEEEEcCCCCCCCC--CceEEEEecCcchhhh------------H--HHHHHHHHHhcCCCeE
Confidence 34678899999985 7999999999988765 4999999999642110 0 0011123344689998
Q ss_pred EEcCCCCCCCCCChhhhhh----------------------hHH-HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHH
Q 002209 716 LGGPTTPIIGEGDEEANDR----------------------FVE-QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFM 772 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~----------------------~~~-~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~ 772 (953)
+.+.+.+..+++....... ... .......+++.++.++..+|+++++|+|+||||++
T Consensus 75 V~v~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~ 154 (265)
T d2gzsa1 75 VAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLF 154 (265)
T ss_dssp EEEEESSSSSCCHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHH
T ss_pred EEecCCCCCcCcccccccccccccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHH
Confidence 8755544433322110000 001 11112234556676777789999999999999999
Q ss_pred HHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCC--------CCCC
Q 002209 773 TANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEE--------DNNS 844 (953)
Q Consensus 773 a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~--------D~~v 844 (953)
++.++.+. +.|.++++.+|... |.....+...++.........|+++.+|+. |..+
T Consensus 155 a~~~~~~~-~~f~~~~a~s~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~ 218 (265)
T d2gzsa1 155 VLDSWLSS-SYFRSYYSASPSLG---------------RGYDALLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVG 218 (265)
T ss_dssp HHHHHHHC-SSCSEEEEESGGGS---------------TTHHHHHHHHHTSCTTTTTTCEEEEEECCC-----------C
T ss_pred HHHHHHcC-cccCEEEEECCccc---------------ccchhhhhccccccccccCCCcEEEEcCCcccccccccccch
Confidence 99988776 67888888887543 223334444556666677788999999977 6677
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002209 845 GTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (953)
Q Consensus 845 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (953)
+ +.++++++++|+++|+++++.+|||++|+.
T Consensus 219 ~--~~~~~~l~~~L~~~g~~~~~~~~pG~~Hg~ 249 (265)
T d2gzsa1 219 V--LSKIHTTLTILKDKGVNAVFWDFPNLGHGP 249 (265)
T ss_dssp H--HHHHHHHHHHHHHTTCCEEEEECTTCCHHH
T ss_pred h--HHHHHHHHHHHHHCCCCEEEEEcCCCCcch
Confidence 7 889999999999999999999999999974
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.3e-15 Score=154.26 Aligned_cols=134 Identities=17% Similarity=0.164 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHH
Q 002209 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTY 817 (953)
Q Consensus 738 ~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 817 (953)
...+.+...++.+.+. .+|.+||+|+|+|+||.+|+.++.++|+.|+++|+++|...... .+.
T Consensus 91 ~~~~~l~~li~~~~~~-~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~---~~~------------- 153 (229)
T d1fj2a_ 91 QAAENIKALIDQEVKN-GIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRA---SFP------------- 153 (229)
T ss_dssp HHHHHHHHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGG---GSC-------------
T ss_pred HHHHHHHHHhhhhhhc-CCCccceeeeecccchHHHHHHHHhhccccCccccccccccccc---ccc-------------
Confidence 3344444445544444 48899999999999999999999999999999999988432100 000
Q ss_pred HhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHh--CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG--HGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 818 ~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~--~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
..+ ....+.++|+|++||++|.+|| ++.+++.++.|++ .+.+++++.|+++||.+. .+..+.+.+||+
T Consensus 154 --~~~-~~~~~~~~Pvli~hG~~D~~vp--~~~~~~~~~~L~~~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~wL~ 223 (229)
T d1fj2a_ 154 --QGP-IGGANRDISILQCHGDCDPLVP--LMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSC-----QQEMMDVKQFID 223 (229)
T ss_dssp --SSC-CCSTTTTCCEEEEEETTCSSSC--HHHHHHHHHHHHHHSCGGGEEEEEETTCCSSCC-----HHHHHHHHHHHH
T ss_pred --ccc-cccccccCceeEEEcCCCCeeC--HHHHHHHHHHHHhcCCCCceEEEEeCCCCCccC-----HHHHHHHHHHHH
Confidence 001 1112346899999999999999 9999999999987 467899999999999875 344678999999
Q ss_pred Hhc
Q 002209 896 KYC 898 (953)
Q Consensus 896 ~~l 898 (953)
++|
T Consensus 224 ~~L 226 (229)
T d1fj2a_ 224 KLL 226 (229)
T ss_dssp HHS
T ss_pred hHC
Confidence 987
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.69 E-value=8.1e-16 Score=153.36 Aligned_cols=179 Identities=15% Similarity=0.112 Sum_probs=124.8
Q ss_pred CCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCCh--------hhhhhhHHHH
Q 002209 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE--------EANDRFVEQL 739 (953)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~--------~~~~~~~~~~ 739 (953)
++.|+||++||.... .+.+ ......++ .++.++.++.......+.. ..........
T Consensus 21 ~~~p~vv~lHG~g~~-----------~~~~----~~l~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (209)
T d3b5ea1 21 ESRECLFLLHGSGVD-----------ETTL----VPLARRIA-PTATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAE 84 (209)
T ss_dssp SCCCEEEEECCTTBC-----------TTTT----HHHHHHHC-TTSEEEEECCSEEETTEEESSCEEETTEECHHHHHHH
T ss_pred CCCCEEEEEcCCCCC-----------HHHH----HHHHHHhc-cCcEEEeeccCcCcccCccccccCCccccchhhHHHH
Confidence 358999999995311 1122 12333444 4677777544211111100 0111223455
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHh
Q 002209 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819 (953)
Q Consensus 740 ~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 819 (953)
+.++.+.++.+.++..+|.+||+|+|+|+||++++.++.++|++|+++|+++|.....
T Consensus 85 ~~~l~~~l~~~~~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~---------------------- 142 (209)
T d3b5ea1 85 TAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD---------------------- 142 (209)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS----------------------
T ss_pred HHHHHHHHHHHHHHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCccccc----------------------
Confidence 6777777888888777899999999999999999999999999999999999853211
Q ss_pred cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 820 ~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
+.......++|+|++||++|.+++ ..+.++.+.|++.|.+++++++++ +|.+. ....+.+.+||.
T Consensus 143 --~~~~~~~~~~p~~~~~G~~D~~~~---~~~~~~~~~l~~~G~~v~~~~~~g-gH~i~-----~~~~~~~~~wl~ 207 (209)
T d3b5ea1 143 --HVPATDLAGIRTLIIAGAADETYG---PFVPALVTLLSRHGAEVDARIIPS-GHDIG-----DPDAAIVRQWLA 207 (209)
T ss_dssp --SCCCCCCTTCEEEEEEETTCTTTG---GGHHHHHHHHHHTTCEEEEEEESC-CSCCC-----HHHHHHHHHHHH
T ss_pred --cccccccccchheeeeccCCCccC---HHHHHHHHHHHHCCCCeEEEEECC-CCCCC-----HHHHHHHHHHhC
Confidence 111123346899999999999985 567889999999999999999998 79985 233456778874
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.68 E-value=3.1e-16 Score=172.12 Aligned_cols=254 Identities=15% Similarity=0.136 Sum_probs=160.7
Q ss_pred CCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCC--CccchHHHHHHHcC
Q 002209 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFP--RIGSTSVLLWLARG 712 (953)
Q Consensus 635 ~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~la~~G 712 (953)
.....+.+.++.+||++|.+.+|+|++ .+++|+||+.|+..... .....+.... .........|+++|
T Consensus 24 ~~~~~~~v~ipmrDG~~L~~~v~~P~~-----~~~~P~il~~tpY~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~G 93 (385)
T d2b9va2 24 RDYIKREVMVPMRDGVKLYTVIVIPKN-----ARNAPILLTRTPYNAKG-----RANRVPNALTMREVLPQGDDVFVEGG 93 (385)
T ss_dssp CSEEEEEEEEECTTSCEEEEEEEEETT-----CCSEEEEEEEESSCHHH-----HTCSSTTCSSHHHHSCGGGHHHHHTT
T ss_pred CCCeEeEEEEECCCCCEEEEEEEEcCC-----CCceeEEEEEccCCCCC-----ccccCCcccccccccchHHHHHHhCC
Confidence 334467799999999999999999975 34699999987521000 0000000110 01123356799999
Q ss_pred cEEEEcCCCCCCCCCChhhh--------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcc
Q 002209 713 FAILGGPTTPIIGEGDEEAN--------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (953)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~--------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 784 (953)
|+|+.++.+|..+.+..+.. ..+...+..|..++++|+.+++..+..||+++|+||||++++.+|+..|+.+
T Consensus 94 y~vv~~d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l 173 (385)
T d2b9va2 94 YIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPAL 173 (385)
T ss_dssp CEEEEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTE
T ss_pred cEEEEEcCCcccCCCCceeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcc
Confidence 99999766544332221110 1123356899999999999997677789999999999999999999998999
Q ss_pred cEEEEcccCCCCCCCCcCccc--------------------------ccchhhhh-------------------------
Q 002209 785 CCGIARSGAYNRTLTPFGFQN--------------------------EDRTLWEA------------------------- 813 (953)
Q Consensus 785 ~a~v~~~~~~d~~~~~~~~~~--------------------------~~~~~~~~------------------------- 813 (953)
+|+|+.++..+.......+.. .....+..
T Consensus 174 ~a~~~~~~~~d~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 253 (385)
T d2b9va2 174 KVAAPESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRM 253 (385)
T ss_dssp EEEEEEEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHH
T ss_pred eEEEEecccccccccccccCCchhccccHHHHHhhhhhcccCccccccchHHHHHHHHhccccccchhcccchhhhhhhh
Confidence 999999887664321100000 00000000
Q ss_pred ------HHHHHhcCcccc--cCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhC--CCcEEEEEeCCCCccCCC----
Q 002209 814 ------TSTYVEMSPFMS--ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH--GALCRLVILPFESHGYAA---- 879 (953)
Q Consensus 814 ------~~~~~~~sp~~~--~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~--g~~~~~~~~~~~~H~~~~---- 879 (953)
.+.+...++... ..++.+|+|++.|..|... ...+.+.++.++.. +.+.++++-|. +|....
T Consensus 254 ~~~p~~d~~w~~~s~~~~~~~~~i~vP~l~~~g~~dd~~---~~g~~~~~~~l~~~~~~~~~~LiiGPw-~H~~~~~~~~ 329 (385)
T d2b9va2 254 HAHPAYDAFWQGQALDKILAQRKPTVPMLWEQGLWDQED---MWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGS 329 (385)
T ss_dssp HHCCSSSHHHHTTCHHHHHHHHCCCSCEEEEEETTCSSC---SSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCS
T ss_pred ccCcccchhhhhcChhHHHhhccccCceEEEEecccCCc---ccchHHHHHHHHhhccCCCcEEEEeCC-cCCCcccccc
Confidence 011222233222 2356789999999887653 45667788888765 45688988886 674311
Q ss_pred --------cc-cHHHHHHHHHHHHHHhccCCC
Q 002209 880 --------RE-SIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 880 --------~~-~~~~~~~~i~~fl~~~l~~~~ 902 (953)
.+ ....+.+.+++||++||+...
T Consensus 330 ~~g~~~~~~~~~~~~~~~~~l~WFD~~LKG~~ 361 (385)
T d2b9va2 330 TLGPLEFEGDTAHQYRRDVFRPFFDEYLKPGS 361 (385)
T ss_dssp EETTEECSSCHHHHHHHHTHHHHHHHHHSTTC
T ss_pred cccccccCcccchhhHHHHHHHHHHHHcCCCC
Confidence 11 123345567999999998654
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.8e-17 Score=163.79 Aligned_cols=191 Identities=15% Similarity=0.072 Sum_probs=126.9
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|..++.....|.. ....|.||++||...... .|.. ......|+++||.|+++| .+|+
T Consensus 13 v~G~~i~y~~~~~~~-----~~~~~~vvllHG~~~~~~-----------~w~~--~~~~~~la~~gy~via~D---~~G~ 71 (208)
T d1imja_ 13 VQGQALFFREALPGS-----GQARFSVLLLHGIRFSSE-----------TWQN--LGTLHRLAQAGYRAVAID---LPGL 71 (208)
T ss_dssp ETTEEECEEEEECSS-----SCCSCEEEECCCTTCCHH-----------HHHH--HTHHHHHHHTTCEEEEEC---CTTS
T ss_pred ECCEEEEEEEecCCC-----CCCCCeEEEECCCCCChh-----------HHhh--hHHHHHHHHcCCeEEEee---cccc
Confidence 489999988888753 223677899999632110 0100 012456889999999955 4677
Q ss_pred CChhhhhh---hH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcC
Q 002209 727 GDEEANDR---FV-EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 802 (953)
Q Consensus 727 G~~~~~~~---~~-~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~ 802 (953)
|.+..... +. .....++.+.++.+ +.+++.|+||||||.+++.++.++|++++++|+++|......
T Consensus 72 G~S~~~~~~~~~~~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~~~~---- 141 (208)
T d1imja_ 72 GHSKEAAAPAPIGELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI---- 141 (208)
T ss_dssp GGGTTSCCSSCTTSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGGS----
T ss_pred cCCCCCCcccccchhhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCccccccc----
Confidence 77754321 11 11122333333332 346889999999999999999999999999999987532100
Q ss_pred cccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCccc
Q 002209 803 FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES 882 (953)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 882 (953)
......++++|+|++||++|..+| .. .+. ++ .-...++.+++++||... .++
T Consensus 142 -------------------~~~~~~~i~~P~Lii~G~~D~~~~--~~--~~~---~~-~~~~~~~~~i~~~gH~~~-~~~ 193 (208)
T d1imja_ 142 -------------------NAANYASVKTPALIVYGDQDPMGQ--TS--FEH---LK-QLPNHRVLIMKGAGHPCY-LDK 193 (208)
T ss_dssp -------------------CHHHHHTCCSCEEEEEETTCHHHH--HH--HHH---HT-TSSSEEEEEETTCCTTHH-HHC
T ss_pred -------------------ccccccccccccccccCCcCcCCc--HH--HHH---HH-hCCCCeEEEECCCCCchh-hhC
Confidence 011234678999999999998765 33 222 22 234578999999999742 456
Q ss_pred HHHHHHHHHHHHHH
Q 002209 883 IMHVLWETDRWLQK 896 (953)
Q Consensus 883 ~~~~~~~i~~fl~~ 896 (953)
.+.+.+.+.+||+.
T Consensus 194 p~~~~~~l~~Fl~~ 207 (208)
T d1imja_ 194 PEEWHTGLLDFLQG 207 (208)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 77888999999874
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=9.1e-17 Score=167.10 Aligned_cols=193 Identities=14% Similarity=0.128 Sum_probs=121.0
Q ss_pred CCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHH
Q 002209 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAV 747 (953)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~ 747 (953)
.+.|+|||+|||.|..... ....+..+.......++++||.|+.++|+...+. .++..++|+.+++
T Consensus 29 ~~~~~vv~iHGGg~~~~~~------~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~--------~~~~~~~d~~~~~ 94 (263)
T d1vkha_ 29 NTREAVIYIHGGAWNDPEN------TPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEI--------TNPRNLYDAVSNI 94 (263)
T ss_dssp TCCEEEEEECCSTTTCTTC------CGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTS--------CTTHHHHHHHHHH
T ss_pred CCCcEEEEECCCCccCCCC------CcchHHHHHHHHHHHHHhCCeEEEEeccccCcch--------hhhHHHHhhhhhh
Confidence 3579999999985432211 0011111111223344578999999888643322 2346788999999
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----------------cccEEEEcccCCCCCCCCcCccc-----
Q 002209 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-----------------LFCCGIARSGAYNRTLTPFGFQN----- 805 (953)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----------------~~~a~v~~~~~~d~~~~~~~~~~----- 805 (953)
+|+.+.. +..+|+|+|+|+||++++.++...++ .+.+.+...+.++.......+..
T Consensus 95 ~~l~~~~--~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (263)
T d1vkha_ 95 TRLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFT 172 (263)
T ss_dssp HHHHHHH--TCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHH
T ss_pred hcccccc--cccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhhccccchhh
Confidence 9998874 56799999999999999998875532 23444444444331100000000
Q ss_pred -----ccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 002209 806 -----EDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (953)
Q Consensus 806 -----~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (953)
.....|..............+.++..|+|++||++|.+|| ++++.+++++|++.|++++++++++++|...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp--~~~s~~l~~~L~~~g~~~~~~~~~~~~H~~~ 248 (263)
T d1vkha_ 173 RLAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLT--LRQTNCLISCLQDYQLSFKLYLDDLGLHNDV 248 (263)
T ss_dssp HHHCTTCGGGCCCCHHHHHHHHHHHHHHHTCEEEEEEETTCSSCC--THHHHHHHHHHHHTTCCEEEEEECCCSGGGG
T ss_pred hcccccccccccccccccCccccccccccCCCeeeeecCCCcccC--HHHHHHHHHHHHHCCCCEEEEEECCCCchhh
Confidence 0000000000000000112234567999999999999999 9999999999999999999999999999753
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=4e-16 Score=164.40 Aligned_cols=243 Identities=14% Similarity=0.088 Sum_probs=158.0
Q ss_pred CCceEEEEEEcC-CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCcc--chHHHHHHHcC
Q 002209 636 SLQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIG--STSVLLWLARG 712 (953)
Q Consensus 636 ~~~~~~~~~~~~-dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~G 712 (953)
.++++.+++.+. .|.++...++.|. +++|+|+++||+.... ....+. ......+.+.|
T Consensus 6 ~~~v~~~~~~s~~~~r~~~~~v~~p~-------~~~Pvl~llhG~~~~~------------d~~~~~~~~~~~~~~~~~~ 66 (288)
T d1sfra_ 6 GLPVEYLQVPSPSMGRDIKVQFQSGG-------ANSPALYLLDGLRAQD------------DFSGWDINTPAFEWYDQSG 66 (288)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEECCS-------TTBCEEEEECCTTCCS------------SSCHHHHHCCHHHHHTTSS
T ss_pred CCEEEEEEEECCCCCcEEEEEEeCCC-------CCceEEEEcCCCCCCC------------cchhhhhhccHHHHHHhCC
Confidence 445677777654 6778888888763 2599999999953110 111110 12344567789
Q ss_pred cEEEEcCCCCCCCCCChhhhh------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccE
Q 002209 713 FAILGGPTTPIIGEGDEEAND------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (953)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~------~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (953)
++|+.++......++....+. ........-+.+.+.+|.++..+|++|++|+|+||||++|+.++.++|++|++
T Consensus 67 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~a 146 (288)
T d1sfra_ 67 LSVVMPVGGQSSFYSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVY 146 (288)
T ss_dssp CEEEEECCCTTCTTCBCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEE
T ss_pred CEEEEeccCCCCCCccccCcccccccccchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccE
Confidence 999997764433222211110 00111222344567777788789999999999999999999999999999999
Q ss_pred EEEcccCCCCCCCCcCccc----------ccchhh--hhHHHHHhcCcccccCCC---CCcEEEEEeCCCCCCCCc----
Q 002209 787 GIARSGAYNRTLTPFGFQN----------EDRTLW--EATSTYVEMSPFMSANKL---KKPILLVHGEEDNNSGTL---- 847 (953)
Q Consensus 787 ~v~~~~~~d~~~~~~~~~~----------~~~~~~--~~~~~~~~~sp~~~~~~i---~~P~Li~~G~~D~~v~~~---- 847 (953)
+++++|.++.......... .....+ .+...+...+|...+.+. +.++++.+|+.|..++..
T Consensus 147 v~~~Sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~ 226 (288)
T d1sfra_ 147 AGAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLP 226 (288)
T ss_dssp EEEESCCSCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHH
T ss_pred EEEecCcccccccccchhhhhhhhhcccccHhhhcCCcchhhhHhcCHHHHHHHhhhcCCeEEEEeCCCCCCCccccccc
Confidence 9999998774432210000 000001 111234456666555443 468999999999876510
Q ss_pred --------hHHHHHHHHHHHhCCCcEEEEEeCCC-CccCCCcccHHHHHHHHHHHHHHhccC
Q 002209 848 --------TMQSDRFFNALKGHGALCRLVILPFE-SHGYAARESIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 848 --------~~~~~~~~~~l~~~g~~~~~~~~~~~-~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (953)
..+++++.++|++.|++..+..+++. +|.+. .+...+..++.||.+.|+.
T Consensus 227 ~~~~e~~~~~~~~~l~~~l~~~g~~~~~~~~~~~G~H~w~---~w~~~l~~~l~~l~~alg~ 285 (288)
T d1sfra_ 227 AKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFPDSGTHSWE---YWGAQLNAMKPDLQRALGA 285 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHTC
T ss_pred cchhHHHHHHHHHHHHHHHHHCCCCeEEEEECCCCccChh---HHHHHHHHHHHHHHHhcCC
Confidence 15678899999999999999999865 69763 2345566788999998864
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.67 E-value=1.7e-16 Score=166.82 Aligned_cols=217 Identities=19% Similarity=0.165 Sum_probs=140.3
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
|...+|.+++...+-.+. ..|+||++||++.... .| ......++++||.|++ +|.
T Consensus 6 ~~~~~g~~i~y~~~g~~~-------~~~~iv~lHG~~g~~~-----------~~----~~~~~~~~~~~~~vi~---~D~ 60 (290)
T d1mtza_ 6 YAKVNGIYIYYKLCKAPE-------EKAKLMTMHGGPGMSH-----------DY----LLSLRDMTKEGITVLF---YDQ 60 (290)
T ss_dssp EEEETTEEEEEEEECCSS-------CSEEEEEECCTTTCCS-----------GG----GGGGGGGGGGTEEEEE---ECC
T ss_pred eEEECCEEEEEEEcCCCC-------CCCeEEEECCCCCchH-----------HH----HHHHHHHHHCCCEEEE---EeC
Confidence 444699999877765321 2578999999752211 11 1223356788999999 555
Q ss_pred CCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC-
Q 002209 724 IGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT- 799 (953)
Q Consensus 724 ~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~- 799 (953)
+|+|.|.... ......++|+.+.++.+.. .+++.++||||||.+++.++.++|++++++|+.+++......
T Consensus 61 ~G~G~S~~~~~~~~~~~~~~~~l~~ll~~l~~-----~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 135 (290)
T d1mtza_ 61 FGCGRSEEPDQSKFTIDYGVEEAEALRSKLFG-----NEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTV 135 (290)
T ss_dssp TTSTTSCCCCGGGCSHHHHHHHHHHHHHHHHT-----TCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHH
T ss_pred CCCccccccccccccccchhhhhhhhhccccc-----ccccceecccccchhhhhhhhcChhhheeeeecccccCcccch
Confidence 6888775421 2345667777777666532 358999999999999999999999999999998875321000
Q ss_pred ----------C-------------cCcccc-c-------------------chhhhhHHH------HH------------
Q 002209 800 ----------P-------------FGFQNE-D-------------------RTLWEATST------YV------------ 818 (953)
Q Consensus 800 ----------~-------------~~~~~~-~-------------------~~~~~~~~~------~~------------ 818 (953)
. ..+... . ......... +.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (290)
T d1mtza_ 136 KEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITG 215 (290)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHSSHHHHHTCSBTTBCCS
T ss_pred hhhhhhhhhhhHHHHHHHHHhhhhccccchhHHHHHHHHhhhhhcccccchHHHHHHHHHHhhhhhhhhhcchhHHhHhh
Confidence 0 000000 0 000000000 00
Q ss_pred ---hcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 819 ---EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 819 ---~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
..+......++++|+|+++|++|..+ +..+..+.+.++. .++++++++||... .++.+.+.+.|.+||.
T Consensus 216 ~~~~~~~~~~~~~i~~P~l~i~G~~D~~~---~~~~~~~~~~~~~----~~~~~~~~~gH~~~-~e~p~~~~~~i~~FL~ 287 (290)
T d1mtza_ 216 TIKDWDITDKISAIKIPTLITVGEYDEVT---PNVARVIHEKIAG----SELHVFRDCSHLTM-WEDREGYNKLLSDFIL 287 (290)
T ss_dssp TTTTCBCTTTGGGCCSCEEEEEETTCSSC---HHHHHHHHHHSTT----CEEEEETTCCSCHH-HHSHHHHHHHHHHHHH
T ss_pred hhhcccHHHHhhcccceEEEEEeCCCCCC---HHHHHHHHHHCCC----CEEEEECCCCCchH-HhCHHHHHHHHHHHHH
Confidence 01122334567899999999999875 4566777666543 48899999999763 5667888999999999
Q ss_pred Hhc
Q 002209 896 KYC 898 (953)
Q Consensus 896 ~~l 898 (953)
+|+
T Consensus 288 ~h~ 290 (290)
T d1mtza_ 288 KHL 290 (290)
T ss_dssp TCC
T ss_pred HhC
Confidence 875
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.67 E-value=2.8e-15 Score=158.45 Aligned_cols=212 Identities=14% Similarity=0.072 Sum_probs=136.7
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|.+++...+-+++ .|.||++||.+.. ...|.......|+++||.|+++ |.+|+
T Consensus 7 ~g~~~i~y~~~G~~~--------~p~vvl~HG~~~~--------------~~~~~~~~~~~l~~~g~~vi~~---D~~G~ 61 (297)
T d1q0ra_ 7 SGDVELWSDDFGDPA--------DPALLLVMGGNLS--------------ALGWPDEFARRLADGGLHVIRY---DHRDT 61 (297)
T ss_dssp ETTEEEEEEEESCTT--------SCEEEEECCTTCC--------------GGGSCHHHHHHHHTTTCEEEEE---CCTTS
T ss_pred ECCEEEEEEEecCCC--------CCEEEEECCCCcC--------------hhHHHHHHHHHHHhCCCEEEEE---eCCCC
Confidence 477888877774432 5789999996421 1122234456788899999994 55678
Q ss_pred CChhhhh-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC--
Q 002209 727 GDEEAND-----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-- 799 (953)
Q Consensus 727 G~~~~~~-----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~-- 799 (953)
|.+.... .......+|+.+.++.+ +.+++.++||||||.+++.+|.++|++++++|++++.......
T Consensus 62 G~S~~~~~~~~~~~~~~~~~d~~~ll~~l------~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~~~~~~~~ 135 (297)
T d1q0ra_ 62 GRSTTRDFAAHPYGFGELAADAVAVLDGW------GVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDA 135 (297)
T ss_dssp TTSCCCCTTTSCCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHH
T ss_pred cccccccccccccccchhhhhhccccccc------cccceeeccccccchhhhhhhcccccceeeeEEEccccccccchh
Confidence 8774321 13455666766665553 3468999999999999999999999999999998765321100
Q ss_pred -----------CcCcccccc----------------------------------hhhhh-------HHHHHh--------
Q 002209 800 -----------PFGFQNEDR----------------------------------TLWEA-------TSTYVE-------- 819 (953)
Q Consensus 800 -----------~~~~~~~~~----------------------------------~~~~~-------~~~~~~-------- 819 (953)
......... ..+.. ...+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (297)
T d1q0ra_ 136 NIERVMRGEPTLDGLPGPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEP 215 (297)
T ss_dssp HHHHHHHTCCCSSCSCCCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCC
T ss_pred hhHHHhhhhhhhhhhhhhhHHHHHHHHHhccccchhhHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhccccchhh
Confidence 000000000 00000 000000
Q ss_pred ----------cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHH
Q 002209 820 ----------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889 (953)
Q Consensus 820 ----------~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~ 889 (953)
.+....+.+|++|+|+++|++|..+| +..++++.+.++ ..+++++|++||.+. .+..+.+.+.
T Consensus 216 ~~~~~~~~~~~~~~~~l~~i~~Pvlvi~G~~D~~~~--~~~~~~~~~~~p----~~~~~~i~~~gH~~~-~e~p~~~~~~ 288 (297)
T d1q0ra_ 216 YAHYSLTLPPPSRAAELREVTVPTLVIQAEHDPIAP--APHGKHLAGLIP----TARLAEIPGMGHALP-SSVHGPLAEV 288 (297)
T ss_dssp CGGGGCCCCCGGGGGGGGGCCSCEEEEEETTCSSSC--TTHHHHHHHTST----TEEEEEETTCCSSCC-GGGHHHHHHH
T ss_pred hhhhhhhhccccchhhhhccCCceEEEEeCCCCCCC--HHHHHHHHHhCC----CCEEEEECCCCCcch-hhCHHHHHHH
Confidence 01123456789999999999999998 888877766553 368999999999874 5666666666
Q ss_pred HHHHHHH
Q 002209 890 TDRWLQK 896 (953)
Q Consensus 890 i~~fl~~ 896 (953)
|.+||+.
T Consensus 289 i~~~l~~ 295 (297)
T d1q0ra_ 289 ILAHTRS 295 (297)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666654
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.66 E-value=3e-15 Score=155.96 Aligned_cols=214 Identities=14% Similarity=0.164 Sum_probs=133.6
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
+++.||.+++...+ + . -|.||++||.+... ..| ......|+++||.|+++ +.
T Consensus 3 ~~t~dG~~l~y~~~---G-----~--g~~ivlvHG~~~~~-----------~~~----~~~~~~l~~~g~~vi~~---D~ 54 (274)
T d1a8qa_ 3 CTTRDGVEIFYKDW---G-----Q--GRPVVFIHGWPLNG-----------DAW----QDQLKAVVDAGYRGIAH---DR 54 (274)
T ss_dssp EECTTSCEEEEEEE---C-----S--SSEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEEE---CC
T ss_pred EECcCCCEEEEEEE---C-----C--CCeEEEECCCCCCH-----------HHH----HHHHHHHHHCCCEEEEE---eC
Confidence 57789998886654 1 1 35688899963211 111 23455688899999994 44
Q ss_pred CCCCChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH-hCCCcccEEEEcccCCCCCCCC
Q 002209 724 IGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA-HAPHLFCCGIARSGAYNRTLTP 800 (953)
Q Consensus 724 ~G~G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~~~~d~~~~~ 800 (953)
+|+|.+.... ........|+.+.++.+ ..+++.++||||||.+++.+++ +.|+++++++.+++........
T Consensus 55 ~G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~~~~~~~ 128 (274)
T d1a8qa_ 55 RGHGHSTPVWDGYDFDTFADDLNDLLTDL------DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKS 128 (274)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCC
T ss_pred CCCcccccccccccchhhHHHHHHHHHHh------hhhhhcccccccccchHHHHHHHhhhccceeEEEEeccCccchhh
Confidence 6777764432 23455566766666544 2468999999999998887655 5588999999887643211100
Q ss_pred ----cCccccc------------chhh--------------------------------------hhHHHHHhcCccccc
Q 002209 801 ----FGFQNED------------RTLW--------------------------------------EATSTYVEMSPFMSA 826 (953)
Q Consensus 801 ----~~~~~~~------------~~~~--------------------------------------~~~~~~~~~sp~~~~ 826 (953)
....... ...+ .....+...+....+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (274)
T d1a8qa_ 129 DKNPDGVPDEVFDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDL 208 (274)
T ss_dssp SSCTTSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHH
T ss_pred hhccchhhHHHHHHHHhhhhhhhHHHhhhhhhhhhhccccchhhhhhHHHHHHHhhhccchhhhhhHHHHhhccchHHHH
Confidence 0000000 0000 000111222333456
Q ss_pred CCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC-cccHHHHHHHHHHHHHH
Q 002209 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA-RESIMHVLWETDRWLQK 896 (953)
Q Consensus 827 ~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~-~~~~~~~~~~i~~fl~~ 896 (953)
.++++|+|+++|++|..++ ++...+....+- ..+++++++++||.... .++.+.+.+.+.+||++
T Consensus 209 ~~i~~Pvlii~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~i~~~gH~~~~~~~~p~~~~~~i~~FL~k 274 (274)
T d1a8qa_ 209 KKFDIPTLVVHGDDDQVVP--IDATGRKSAQII---PNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLNK 274 (274)
T ss_dssp TTCCSCEEEEEETTCSSSC--GGGTHHHHHHHS---TTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHTC
T ss_pred HhccceeeeeccCCCCCcC--HHHHHHHHHHhC---CCCEEEEECCCCCcccccccCHHHHHHHHHHHHCc
Confidence 7899999999999999988 776544443332 13589999999997542 35567788889999864
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.65 E-value=4.5e-15 Score=154.57 Aligned_cols=215 Identities=14% Similarity=0.181 Sum_probs=138.9
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC
Q 002209 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (953)
Q Consensus 643 ~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (953)
++++.||.+|+...+-|++ .|.||++||.+... ..| ......|+++||.|+++|.
T Consensus 2 ~i~~~dG~~l~y~~~G~~~--------~~~vv~lHG~~~~~-----------~~~----~~~~~~l~~~g~~vi~~D~-- 56 (275)
T d1a88a_ 2 TVTTSDGTNIFYKDWGPRD--------GLPVVFHHGWPLSA-----------DDW----DNQMLFFLSHGYRVIAHDR-- 56 (275)
T ss_dssp EEECTTSCEEEEEEESCTT--------SCEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEEECC--
T ss_pred EEEecCCCEEEEEEecCCC--------CCeEEEECCCCCCH-----------HHH----HHHHHHHHhCCCEEEEEec--
Confidence 4678899999999987653 36788999964211 111 2345678899999999554
Q ss_pred CCCCCChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCh-HHHHHHHHHHhCCCcccEEEEcccCCCCCCC
Q 002209 723 IIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSY-GAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (953)
Q Consensus 723 ~~G~G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~-GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~ 799 (953)
+|+|.+.... .......+|+.+.++.+ +.+++.++|||+ ||.+++.++.++|++++.+|++++.......
T Consensus 57 -~G~G~s~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~ 129 (275)
T d1a88a_ 57 -RGHGRSDQPSTGHDMDTYAADVAALTEAL------DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVK 129 (275)
T ss_dssp -TTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBC
T ss_pred -ccccccccccccccccccccccccccccc------cccccccccccccccchhhcccccCcchhhhhhhhccccccccc
Confidence 5777764322 23566677888877765 235778888886 5666677788999999999998764321100
Q ss_pred C-c---Ccc-------------------------------ccc----c----hhhh------------hHHHHHhcCccc
Q 002209 800 P-F---GFQ-------------------------------NED----R----TLWE------------ATSTYVEMSPFM 824 (953)
Q Consensus 800 ~-~---~~~-------------------------------~~~----~----~~~~------------~~~~~~~~sp~~ 824 (953)
. . ... ... . ..+. ....+...+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (275)
T d1a88a_ 130 SDTNPDGLPLEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTD 209 (275)
T ss_dssp BTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHH
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhH
Confidence 0 0 000 000 0 0000 001111222233
Q ss_pred ccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 825 ~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
.+.++++|+|+++|++|..+| .....+.+.++- ..+++++++++||... .++.+.+.+.|.+||+
T Consensus 210 ~l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 274 (275)
T d1a88a_ 210 DLKRIDVPVLVAHGTDDQVVP--YADAAPKSAELL---ANATLKSYEGLPHGML-STHPEVLNPDLLAFVK 274 (275)
T ss_dssp HHHHCCSCEEEEEETTCSSSC--STTTHHHHHHHS---TTEEEEEETTCCTTHH-HHCHHHHHHHHHHHHH
T ss_pred HHHhhccccceeecCCCCCcC--HHHHHHHHHHhC---CCCEEEEECCCCCchH-HhCHHHHHHHHHHHHc
Confidence 456789999999999999998 766555444332 2478999999999764 4667888899999986
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.64 E-value=2.3e-14 Score=152.67 Aligned_cols=239 Identities=13% Similarity=0.066 Sum_probs=151.1
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
...+++||||+.|||.... .+.+|++.. + ...+.++++. ..
T Consensus 20 ~~~~a~~~~g~~l~~~~~~----------------------------------~v~i~~~~~-~--~~~~~~~~H~--~~ 60 (311)
T d1nr0a1 20 AVVLGNTPAGDKIQYCNGT----------------------------------SVYTVPVGS-L--TDTEIYTEHS--HQ 60 (311)
T ss_dssp CCCCEECTTSSEEEEEETT----------------------------------EEEEEETTC-S--SCCEEECCCS--SC
T ss_pred eEEEEEcCCCCEEEEEeCC----------------------------------EEEEEECCC-C--ceeEEEcCCC--CC
Confidence 3467899999999998763 678999843 2 2233444433 47
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceee--cccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP--LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~--lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
+....|||||++||... ....|.++++.+++... ...... ..+..++|+|||+.|+.....
T Consensus 61 v~~~~~sp~g~~latg~---------~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~v~~s~d~~~l~~~~~~---- 123 (311)
T d1nr0a1 61 TTVAKTSPSGYYCASGD---------VHGNVRIWDTTQTTHILKTTIPVFS----GPVKDISWDSESKRIAAVGEG---- 123 (311)
T ss_dssp EEEEEECTTSSEEEEEE---------TTSEEEEEESSSTTCCEEEEEECSS----SCEEEEEECTTSCEEEEEECC----
T ss_pred EEEEEEeCCCCeEeccc---------cCceEeeeeeecccccccccccccc----Ccccccccccccccccccccc----
Confidence 89999999999998754 25578888887765321 111112 227789999999988866210
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCC-CcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDG~~ 345 (953)
....+.++++ +++ ...+... ..+..++|+|||+.
T Consensus 124 -------------------------------------------~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~ 160 (311)
T d1nr0a1 124 -------------------------------------------RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF 160 (311)
T ss_dssp -------------------------------------------SSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSC
T ss_pred -------------------------------------------cccccccccccccccccccccccccccccccccccee
Confidence 1112334455 443 3334433 66788999999998
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
++.+... .+.|.+||+.+.+....... ....+..+.|+|||+.++..
T Consensus 161 ~l~sgs~------------d~~i~i~d~~~~~~~~~~~~------------~~~~i~~v~~~p~~~~l~~~--------- 207 (311)
T d1nr0a1 161 RIISGSD------------DNTVAIFEGPPFKFKSTFGE------------HTKFVHSVRYNPDGSLFAST--------- 207 (311)
T ss_dssp EEEEEET------------TSCEEEEETTTBEEEEEECC------------CSSCEEEEEECTTSSEEEEE---------
T ss_pred eeccccc------------cccccccccccccccccccc------------ccccccccccCccccccccc---------
Confidence 6554322 23799999987654433221 11234678999999976655
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEe-------ecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILH-------KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~-------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
+..+.+.+|+. .++.....+. .+...+..++|||||++|+..+.++ .|.++|..++
T Consensus 208 ----~~d~~v~~~d~--~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg----~v~iwd~~t~ 270 (311)
T d1nr0a1 208 ----GGDGTIVLYNG--VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK----TIKIWNVATL 270 (311)
T ss_dssp ----ETTSCEEEEET--TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTT
T ss_pred ----ccccccccccc--ccccccccccccccccccccccccccccCCCCCEEEEEeCCC----eEEEEECCCC
Confidence 34567888885 2222222221 1234466789999999988765433 4666677664
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.63 E-value=5.9e-15 Score=146.43 Aligned_cols=110 Identities=22% Similarity=0.230 Sum_probs=91.8
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEE
Q 002209 756 AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILL 835 (953)
Q Consensus 756 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li 835 (953)
+|.++++++|+|+||.+++.++..+|+.+.++++.++...... .........|+++
T Consensus 93 ~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~i 148 (203)
T d2r8ba1 93 YQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP------------------------KISPAKPTRRVLI 148 (203)
T ss_dssp HTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC------------------------CCCCCCTTCEEEE
T ss_pred CCCceEEEEEecCHHHHHHHHHHhhhhcccceeeecccccccc------------------------ccccccccchhhc
Confidence 5788999999999999999999999999999999998643111 0111234679999
Q ss_pred EEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 836 ~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
+||++|.+|| ++++++++++|++.|+++++++|++ ||.+. ...++.+.+||.+|
T Consensus 149 ~hG~~D~~vp--~~~~~~~~~~L~~~g~~v~~~~~~g-gH~~~-----~~~~~~~~~wl~~~ 202 (203)
T d2r8ba1 149 TAGERDPICP--VQLTKALEESLKAQGGTVETVWHPG-GHEIR-----SGEIDAVRGFLAAY 202 (203)
T ss_dssp EEETTCTTSC--HHHHHHHHHHHHHHSSEEEEEEESS-CSSCC-----HHHHHHHHHHHGGG
T ss_pred cccCCCCccc--HHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHHHHHHHHHHHhc
Confidence 9999999999 9999999999999999999999997 79975 23467788998765
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.7e-13 Score=147.63 Aligned_cols=286 Identities=13% Similarity=0.116 Sum_probs=176.0
Q ss_pred eeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceee-cccCCCccccccccceEEecCCeEEE
Q 002209 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP-LFQSPDIYLNAIFDNFVWVNNSTLLV 259 (953)
Q Consensus 181 ~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wspDg~~l~ 259 (953)
.+..+.+...+...+|||||++|+... +..|.+||+..+.... +...........+..++|+|||+.|+
T Consensus 44 ~~~~~~H~~~V~~v~fs~~g~~latg~----------dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~ 113 (337)
T d1gxra_ 44 QINTLNHGEVVCAVTISNPTRHVYTGG----------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLI 113 (337)
T ss_dssp EEEEECCSSCCCEEEECSSSSEEEEEC----------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEE
T ss_pred EEEECCCCCcEEEEEECCCCCEEEEEE----------CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEE
Confidence 333343445789999999999998732 3368888887654322 11111111122267899999999988
Q ss_pred EEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC--ce-eEeCCC-Ccc
Q 002209 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--TV-KEIGPP-AVY 334 (953)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g--~~-~~l~~~-~~~ 334 (953)
... ..+.|.++|+ .. +. ..+... ..+
T Consensus 114 s~~-------------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v 144 (337)
T d1gxra_ 114 VGG-------------------------------------------------EASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEE-------------------------------------------------SSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred Eee-------------------------------------------------cccccccccccccccccccccccccccc
Confidence 661 1234556666 32 22 223333 566
Q ss_pred cccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCce
Q 002209 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (953)
Q Consensus 335 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~ 414 (953)
....|+||+..++....+ ..+.+|++.+++........ ...+..++|+++++.++
T Consensus 145 ~~~~~~~~~~~l~s~~~d-------------~~i~~~~~~~~~~~~~~~~~------------~~~v~~l~~s~~~~~~~ 199 (337)
T d1gxra_ 145 YALAISPDSKVCFSCCSD-------------GNIAVWDLHNQTLVRQFQGH------------TDGASCIDISNDGTKLW 199 (337)
T ss_dssp EEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEECCC------------SSCEEEEEECTTSSEEE
T ss_pred cccccccccccccccccc-------------cccccccccccccccccccc------------ccccccccccccccccc
Confidence 778899999999877633 37999999876544332211 12345789999998777
Q ss_pred EEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCC
Q 002209 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVA 494 (953)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~ 494 (953)
.. +..+.+.++++ ..++..........+..++|+|+++.|+....++ .+.+++..++ +
T Consensus 200 ~~-------------~~d~~v~i~d~---~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~----~i~i~d~~~~--~ 257 (337)
T d1gxra_ 200 TG-------------GLDNTVRSWDL---REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESS----NVEVLHVNKP--D 257 (337)
T ss_dssp EE-------------ETTSEEEEEET---TTTEEEEEEECSSCEEEEEECTTSSEEEEEETTS----CEEEEETTSS--C
T ss_pred cc-------------ccccccccccc---ccceeecccccccceEEEEEcccccccceecccc----cccccccccc--c
Confidence 65 44567889986 3333333334556677899999999988765443 4556666654 2
Q ss_pred cEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCccc
Q 002209 495 PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEK 574 (953)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~ 574 (953)
.. ........+.. +.|+|||++|+....+ ..|++||+.+++..........
T Consensus 258 ~~-~~~~~~~~i~~------v~~s~~g~~l~s~s~D---------------------g~i~iwd~~~~~~~~~~~~~~~- 308 (337)
T d1gxra_ 258 KY-QLHLHESCVLS------LKFAYCGKWFVSTGKD---------------------NLLNAWRTPYGASIFQSKESSS- 308 (337)
T ss_dssp EE-EECCCSSCEEE------EEECTTSSEEEEEETT---------------------SEEEEEETTTCCEEEEEECSSC-
T ss_pred cc-cccccccccce------EEECCCCCEEEEEeCC---------------------CeEEEEECCCCCEEEEccCCCC-
Confidence 22 22222222222 7899999998876532 2499999998887655544332
Q ss_pred ceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEEC
Q 002209 575 YYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSW 616 (953)
Q Consensus 575 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~ 616 (953)
+.. .+|+||++.|+.. +.. ..|++|++
T Consensus 309 ----v~~-------~~~s~d~~~l~t~-s~D---~~I~vWdl 335 (337)
T d1gxra_ 309 ----VLS-------CDISVDDKYIVTG-SGD---KKATVYEV 335 (337)
T ss_dssp ----EEE-------EEECTTSCEEEEE-ETT---SCEEEEEE
T ss_pred ----EEE-------EEEeCCCCEEEEE-eCC---CeEEEEEE
Confidence 222 4689999876643 322 23666653
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.61 E-value=3.3e-15 Score=151.47 Aligned_cols=182 Identities=12% Similarity=0.073 Sum_probs=118.2
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
..+..|+++||.|++ ++.+|+|.+.... ........+...++..+.... .++++++|||+||.+++.++.++
T Consensus 29 ~l~~~L~~~G~~v~~---~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~G~S~Gg~~~~~~~~~~ 102 (242)
T d1tqha_ 29 MLGRFLESKGYTCHA---PIYKGHGVPPEELVHTGPDDWWQDVMNGYEFLKNKG---YEKIAVAGLSLGGVFSLKLGYTV 102 (242)
T ss_dssp HHHHHHHHTTCEEEE---CCCTTSSSCHHHHTTCCHHHHHHHHHHHHHHHHHHT---CCCEEEEEETHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCEEEE---EeCCCCccccccccccchhHHHHHHHHHHhhhhhcc---cCceEEEEcchHHHHhhhhcccC
Confidence 456678899999999 5556888775432 233455566666666665543 46899999999999999999999
Q ss_pred CCcccEEEEcccCCCCCCCCcCccc----------ccchhhh-----------------hHHHHHhcCcccccCCCCCcE
Q 002209 781 PHLFCCGIARSGAYNRTLTPFGFQN----------EDRTLWE-----------------ATSTYVEMSPFMSANKLKKPI 833 (953)
Q Consensus 781 p~~~~a~v~~~~~~d~~~~~~~~~~----------~~~~~~~-----------------~~~~~~~~sp~~~~~~i~~P~ 833 (953)
|.... ++..++....... ..+.. ....... .............+..+++|+
T Consensus 103 ~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (242)
T d1tqha_ 103 PIEGI-VTMCAPMYIKSEE-TMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIADVRDHLDLIYAPT 180 (242)
T ss_dssp CCSCE-EEESCCSSCCCHH-HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHTGGGCCSCE
T ss_pred ccccc-ccccccccccchh-HHHHHHHHHHHHHhhhccchhhhHHHHHhhhhhhccchhhcccccccccccccceecccc
Confidence 76433 3322222211000 00000 0000000 000000111234456789999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 834 Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
|+++|++|..+| ++.+.++++.++. ..+++++++++||.....+..+.+.+.+.+||++
T Consensus 181 lii~g~~D~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~Fl~~ 239 (242)
T d1tqha_ 181 FVVQARHDEMIN--PDSANIIYNEIES--PVKQIKWYEQSGHVITLDQEKDQLHEDIYAFLES 239 (242)
T ss_dssp EEEEETTCSSSC--TTHHHHHHHHCCC--SSEEEEEETTCCSSGGGSTTHHHHHHHHHHHHHH
T ss_pred ceeecccCCccC--HHHHHHHHHHcCC--CCcEEEEECCCCCcCccccCHHHHHHHHHHHHHh
Confidence 999999999998 9999999887743 4579999999999875445678899999999986
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.61 E-value=9.2e-15 Score=153.08 Aligned_cols=211 Identities=18% Similarity=0.139 Sum_probs=130.7
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCC
Q 002209 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (953)
Q Consensus 648 dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G 727 (953)
++.++++...-+++ .|+||++||.+... ..+..|. .....| ++||.|++ ++.+|+|
T Consensus 12 ~~~~~h~~~~G~~~--------~p~ivllHG~~~~~-----------~~~~~~~-~~~~~L-~~~~~vi~---~D~~G~G 67 (281)
T d1c4xa_ 12 GTLASHALVAGDPQ--------SPAVVLLHGAGPGA-----------HAASNWR-PIIPDL-AENFFVVA---PDLIGFG 67 (281)
T ss_dssp TTSCEEEEEESCTT--------SCEEEEECCCSTTC-----------CHHHHHG-GGHHHH-HTTSEEEE---ECCTTST
T ss_pred CCEEEEEEEEecCC--------CCEEEEECCCCCCC-----------cHHHHHH-HHHHHH-hCCCEEEE---EeCCCCc
Confidence 55678877765432 58999999953110 0111111 112333 56999999 5556888
Q ss_pred Chhhhh-------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC
Q 002209 728 DEEAND-------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800 (953)
Q Consensus 728 ~~~~~~-------~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~ 800 (953)
.+.... .+....+.|+.+.++.+ . .+++.++||||||.+++.+|.++|++++++|++++........
T Consensus 68 ~S~~~~~~~~~~~~~~~~~~~~i~~~i~~~---~---~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~~~~~~~~ 141 (281)
T d1c4xa_ 68 QSEYPETYPGHIMSWVGMRVEQILGLMNHF---G---IEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNAR 141 (281)
T ss_dssp TSCCCSSCCSSHHHHHHHHHHHHHHHHHHH---T---CSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSC
T ss_pred cccccccccccchhhHHHhhhhcccccccc---c---cccceeccccccccccccccccccccccceEEeccccCccccc
Confidence 774321 11223344444444333 2 3589999999999999999999999999999988753211000
Q ss_pred -------------------------cCccccc-chhhh----------h-------HHHHHh--------cCcccccCCC
Q 002209 801 -------------------------FGFQNED-RTLWE----------A-------TSTYVE--------MSPFMSANKL 829 (953)
Q Consensus 801 -------------------------~~~~~~~-~~~~~----------~-------~~~~~~--------~sp~~~~~~i 829 (953)
+.+.... ..... . ...+.. ..+...+.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 221 (281)
T d1c4xa_ 142 PPELARLLAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRL 221 (281)
T ss_dssp CHHHHHHHTGGGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTC
T ss_pred hhHHHHHHHhhhhcccchhhhhhhhhcccccccchhhhHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccchhhhhhh
Confidence 0000000 00000 0 000000 1122345778
Q ss_pred CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 830 ~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
++|+|+++|++|..+| ++.++++.+.++ ..+++++|++||... .+..+.+.+.+.+||.
T Consensus 222 ~~P~lii~G~~D~~~~--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 280 (281)
T d1c4xa_ 222 PHDVLVFHGRQDRIVP--LDTSLYLTKHLK----HAELVVLDRCGHWAQ-LERWDAMGPMLMEHFR 280 (281)
T ss_dssp CSCEEEEEETTCSSSC--THHHHHHHHHCS----SEEEEEESSCCSCHH-HHSHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCCCcC--HHHHHHHHHHCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHhC
Confidence 9999999999999998 888888776653 368999999999763 5667788888999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.61 E-value=2e-13 Score=145.17 Aligned_cols=246 Identities=9% Similarity=0.061 Sum_probs=157.0
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
....++++|||+.|+|.. ...+++++++.++..++....... +..++|+|||++|+...
T Consensus 19 ~~~~~a~~~~g~~l~~~~----------~~~v~i~~~~~~~~~~~~~~H~~~----v~~~~~sp~g~~latg~------- 77 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCN----------GTSVYTVPVGSLTDTEIYTEHSHQ----TTVAKTSPSGYYCASGD------- 77 (311)
T ss_dssp CCCCCEECTTSSEEEEEE----------TTEEEEEETTCSSCCEEECCCSSC----EEEEEECTTSSEEEEEE-------
T ss_pred CeEEEEEcCCCCEEEEEe----------CCEEEEEECCCCceeEEEcCCCCC----EEEEEEeCCCCeEeccc-------
Confidence 445678999999999965 346899999887665554332222 78999999999998661
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-e--eEeCCC-CcccccccCCCCc
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-V--KEIGPP-AVYTSLDPSPDEK 344 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~--~~l~~~-~~~~~~~~SpDG~ 344 (953)
..+.|.++++ +++ . ..+... ..+..++|+|||+
T Consensus 78 ------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 115 (311)
T d1nr0a1 78 ------------------------------------------VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK 115 (311)
T ss_dssp ------------------------------------------TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred ------------------------------------------cCceEeeeeeeccccccccccccccCcccccccccccc
Confidence 2245667777 442 1 223333 6788899999999
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
+|+..+... ...+.+|+.+.+.. ..+..+ ...+..++|+|||+.++...
T Consensus 116 ~l~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~h-------------~~~v~~v~~~~~~~~~l~sg------ 165 (311)
T d1nr0a1 116 RIAAVGEGR-----------ERFGHVFLFDTGTSNGNLTGQ-------------ARAMNSVDFKPSRPFRIISG------ 165 (311)
T ss_dssp EEEEEECCS-----------SCSEEEEETTTCCBCBCCCCC-------------SSCEEEEEECSSSSCEEEEE------
T ss_pred ccccccccc-----------ccccccccccccccccccccc-------------ccccccccccccceeeeccc------
Confidence 998887332 22567888875432 222221 13456789999998644331
Q ss_pred CcccccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCC
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 502 (953)
+..+.|.+||+ ..++. ..+..+...+..+.|+|||+.|+....++ .+.+++...+ .........
T Consensus 166 ------s~d~~i~i~d~---~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~----~v~~~d~~~~--~~~~~~~~~ 230 (311)
T d1nr0a1 166 ------SDDNTVAIFEG---PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG----TIVLYNGVDG--TKTGVFEDD 230 (311)
T ss_dssp ------ETTSCEEEEET---TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTTC--CEEEECBCT
T ss_pred ------ccccccccccc---cccccccccccccccccccccCccccccccccccc----cccccccccc--ccccccccc
Confidence 23457889986 33332 22344456677899999999988776543 3445555553 222222211
Q ss_pred C-------ccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEecc
Q 002209 503 S-------EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570 (953)
Q Consensus 503 ~-------~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~ 570 (953)
. ..+.. ++|+|||++|+....+. .|++||+.+++..+.+..
T Consensus 231 ~~~~~~h~~~V~~------~~~s~~~~~l~tgs~Dg---------------------~v~iwd~~t~~~~~~l~~ 278 (311)
T d1nr0a1 231 SLKNVAHSGSVFG------LTWSPDGTKIASASADK---------------------TIKIWNVATLKVEKTIPV 278 (311)
T ss_dssp TSSSCSSSSCEEE------EEECTTSSEEEEEETTS---------------------EEEEEETTTTEEEEEEEC
T ss_pred ccccccccccccc------cccCCCCCEEEEEeCCC---------------------eEEEEECCCCcEEEEEEC
Confidence 1 11222 78999999998765321 499999999987654443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.60 E-value=3.2e-14 Score=150.23 Aligned_cols=269 Identities=12% Similarity=0.106 Sum_probs=157.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCC--C
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP--D 187 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~--~ 187 (953)
.+..++|||||++|+..+.+ +.|.+||+.+ ++.... +. +
T Consensus 14 ~V~~l~~s~dg~~l~s~s~D---------------------------------g~v~vWd~~~----~~~~~~--~~~~h 54 (299)
T d1nr0a2 14 AITALSSSADGKTLFSADAE---------------------------------GHINSWDIST----GISNRV--FPDVH 54 (299)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SCEEEEETTT----CCEEEC--SSCSC
T ss_pred CcEEEEECCCCCEEEEEcCC---------------------------------CeEEEEECCC----CcEEEE--EcCCC
Confidence 46788999999999987765 3679999854 232222 22 2
Q ss_pred CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 188 ~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
...+....|+|||+.++. . ....+.+++..+........... .....+..+.|+|||+.++..
T Consensus 55 ~~~v~~v~~~~~g~~~~~-~---------~d~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~g~~~~~~------ 117 (299)
T d1nr0a2 55 ATMITGIKTTSKGDLFTV-S---------WDDHLKVVPAGGSGVDSSKAVAN-KLSSQPLGLAVSADGDIAVAA------ 117 (299)
T ss_dssp SSCEEEEEECTTSCEEEE-E---------TTTEEEEECSSSSSSCTTSCCEE-ECSSCEEEEEECTTSSCEEEE------
T ss_pred CCcEEEEEeeccceeecc-c---------ceeeEEEeccCCccccccccccc-ccccccccccccccccccccc------
Confidence 236888999999975443 2 14567777766543221111100 011124578899999877755
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCCCcccccccCCCCcEEE
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYIL 347 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~~~~~~SpDG~~l~ 347 (953)
....+.+++. ++...+........++|+|||+.|+
T Consensus 118 --------------------------------------------~~~~i~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~ 152 (299)
T d1nr0a2 118 --------------------------------------------CYKHIAIYSH-GKLTEVPISYNSSCVALSNDKQFVA 152 (299)
T ss_dssp --------------------------------------------ESSEEEEEET-TEEEEEECSSCEEEEEECTTSCEEE
T ss_pred --------------------------------------------cccccccccc-ccccccccccccccccccccccccc
Confidence 1123334443 2222222224456688999999998
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
....+ +.+.+||+.++....+..... ...+..++|+||++.++..
T Consensus 153 ~g~~d-------------g~i~~~d~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~l~~~----------- 197 (299)
T d1nr0a2 153 VGGQD-------------SKVHVYKLSGASVSEVKTIVH-----------PAEITSVAFSNNGAFLVAT----------- 197 (299)
T ss_dssp EEETT-------------SEEEEEEEETTEEEEEEEEEC-----------SSCEEEEEECTTSSEEEEE-----------
T ss_pred ccccc-------------ccccccccccccccccccccc-----------ccccccccccccccccccc-----------
Confidence 87644 389999998776554332111 1234678999999877655
Q ss_pred ccccCCeEEEEecCCCCCCCc---eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCc
Q 002209 428 EVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~---~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 504 (953)
+..+.+++|++ .++... ..+..+...+..++|+|||+.|+..+.++ .+.++++.++.............
T Consensus 198 --~~d~~i~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg----~i~iwd~~~~~~~~~~~~~~~~~ 269 (299)
T d1nr0a2 198 --DQSRKVIPYSV--ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN----SVIVWNMNKPSDHPIIIKGAHAM 269 (299)
T ss_dssp --ETTSCEEEEEG--GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTCTTSCCEEETTSSTT
T ss_pred --ccccccccccc--cccccccccccccccccccccccccccccceEEEcCCC----EEEEEECCCCCcceEEEecCCCC
Confidence 44567889986 222111 11233345567789999999998876544 34555555542233333222111
Q ss_pred cccCCCCCCCeEeccCCCEEEEEe
Q 002209 505 DVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 505 ~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.... ..+++++++|+...
T Consensus 270 ~~v~------~~~~~~~~~l~s~s 287 (299)
T d1nr0a2 270 SSVN------SVIWLNETTIVSAG 287 (299)
T ss_dssp SCEE------EEEEEETTEEEEEE
T ss_pred CcEE------EEEECCCCEEEEEe
Confidence 1111 23566777777654
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.60 E-value=1.9e-14 Score=149.17 Aligned_cols=214 Identities=14% Similarity=0.122 Sum_probs=135.1
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC
Q 002209 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (953)
Q Consensus 643 ~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (953)
+|.+.||.+|+...+- . -|.||++||++... ..| ......|+++||.|+++ +
T Consensus 2 ~f~~~dG~~l~y~~~G--------~--g~~vv~lHG~~~~~-----------~~~----~~~~~~l~~~g~~vi~~---D 53 (271)
T d1va4a_ 2 TFVAKDGTQIYFKDWG--------S--GKPVLFSHGWLLDA-----------DMW----EYQMEYLSSRGYRTIAF---D 53 (271)
T ss_dssp EEECTTSCEEEEEEES--------S--SSEEEEECCTTCCG-----------GGG----HHHHHHHHTTTCEEEEE---C
T ss_pred EEEeECCeEEEEEEEc--------C--CCeEEEECCCCCCH-----------HHH----HHHHHHHHhCCCEEEEE---e
Confidence 5777899999765541 1 34578899964211 011 23455678899999994 4
Q ss_pred CCCCCChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHH-HHHHhCCCcccEEEEcccCCCCCCC
Q 002209 723 IIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA-NLLAHAPHLFCCGIARSGAYNRTLT 799 (953)
Q Consensus 723 ~~G~G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~-~~a~~~p~~~~a~v~~~~~~d~~~~ 799 (953)
.+|+|.+.... ........|+.+.++.+ +.+++.++|||+||.+++ .++.++|++++.++.+++.......
T Consensus 54 ~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~~~~~~ 127 (271)
T d1va4a_ 54 RRGFGRSDQPWTGNDYDTFADDIAQLIEHL------DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQ 127 (271)
T ss_dssp CTTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBC
T ss_pred ccccccccccccccccccccccceeeeeec------CCCcceeeccccccccccccccccccceeeEEEeeccccccccc
Confidence 56777774422 23455566666655544 346889999999887664 5567789999999988765432111
Q ss_pred CcCccccc------c-----------hh----------------hh--------------------hHHHHHhcCccccc
Q 002209 800 PFGFQNED------R-----------TL----------------WE--------------------ATSTYVEMSPFMSA 826 (953)
Q Consensus 800 ~~~~~~~~------~-----------~~----------------~~--------------------~~~~~~~~sp~~~~ 826 (953)
...+.... . .. .+ ....+...+....+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 207 (271)
T d1va4a_ 128 KPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDM 207 (271)
T ss_dssp BTTBTTSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHH
T ss_pred chhhhhhhhhhHHHHHHHHhhhhhhhhhhhhcchhhcccchhhhhhhHHHHHHhhhhhhhhhhhhhcccccchhhhhhhh
Confidence 10000000 0 00 00 00111122233345
Q ss_pred CCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 827 ~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
.+++.|+|+++|++|..+| +..+.++++.+.. .++++++|++||... .++.+.+.+.+.+||++
T Consensus 208 ~~i~~Pvl~i~g~~D~~~~--~~~~~~~~~~~~~---~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fL~k 271 (271)
T d1va4a_ 208 AKIDVPTLVIHGDGDQIVP--FETTGKVAAELIK---GAELKVYKDAPHGFA-VTHAQQLNEDLLAFLKR 271 (271)
T ss_dssp HHCCSCEEEEEETTCSSSC--GGGTHHHHHHHST---TCEEEEETTCCTTHH-HHTHHHHHHHHHHHHTC
T ss_pred hhcccceeecccCCCCCCC--HHHHHHHHHHhCC---CCEEEEECCCCCchH-HhCHHHHHHHHHHHHCc
Confidence 6789999999999999998 8888777766532 258889999999763 45677888888998863
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.59 E-value=3.1e-14 Score=147.87 Aligned_cols=213 Identities=16% Similarity=0.169 Sum_probs=134.4
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC
Q 002209 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (953)
Q Consensus 643 ~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (953)
+|++.||.+++.... + . -|.||++||.+... ..| ......|+++||.|+++|
T Consensus 2 ~f~~~dG~~i~y~~~---G-----~--g~pvvllHG~~~~~-----------~~~----~~~~~~l~~~~~~vi~~D--- 53 (273)
T d1a8sa_ 2 TFTTRDGTQIYYKDW---G-----S--GQPIVFSHGWPLNA-----------DSW----ESQMIFLAAQGYRVIAHD--- 53 (273)
T ss_dssp EEECTTSCEEEEEEE---S-----C--SSEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEEEC---
T ss_pred EEEeeCCcEEEEEEE---C-----C--CCeEEEECCCCCCH-----------HHH----HHHHHHHHhCCCEEEEEe---
Confidence 578899999977654 1 1 34577899964211 111 234556888999999954
Q ss_pred CCCCCChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH-HHHhCCCcccEEEEcccCCCCCCC
Q 002209 723 IIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN-LLAHAPHLFCCGIARSGAYNRTLT 799 (953)
Q Consensus 723 ~~G~G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~-~a~~~p~~~~a~v~~~~~~d~~~~ 799 (953)
.+|+|.+.... .......+|+.+.++.+ +.++..++|||+||.+++. ++.+.|+++++++++++.......
T Consensus 54 ~~G~G~S~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~~~~~~ 127 (273)
T d1a8sa_ 54 RRGHGRSSQPWSGNDMDTYADDLAQLIEHL------DLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLK 127 (273)
T ss_dssp CTTSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBC
T ss_pred chhcCccccccccccccchHHHHHHHHHhc------CccceeeeeeccCCccchhhhhhhhhhccceeEEEecccccccc
Confidence 46777764432 23455666766665553 2357889999998865555 555678999999888764321110
Q ss_pred Cc----Cccc-------------------------------ccc--------hhhh------------hHHHHHhcCccc
Q 002209 800 PF----GFQN-------------------------------EDR--------TLWE------------ATSTYVEMSPFM 824 (953)
Q Consensus 800 ~~----~~~~-------------------------------~~~--------~~~~------------~~~~~~~~sp~~ 824 (953)
.. .... ... ..+. ....+...+...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (273)
T d1a8sa_ 128 TEANPGGLPMEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTE 207 (273)
T ss_dssp CSSCTTSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHH
T ss_pred cccccccchhhhhhhHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHHhhcccchhhhhhhHHHhhhhhhhH
Confidence 00 0000 000 0000 001112233344
Q ss_pred ccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 825 ~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
.+.++++|+|+++|++|..+| .+.+.++.+.+.. .++++++|++||... .++.+.+.+.|.+||+
T Consensus 208 ~~~~i~~Pvlii~g~~D~~~~--~~~~~~~~~~~~~---~~~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 272 (273)
T d1a8sa_ 208 DLKKIDVPTLVVHGDADQVVP--IEASGIASAALVK---GSTLKIYSGAPHGLT-DTHKDQLNADLLAFIK 272 (273)
T ss_dssp HHHTCCSCEEEEEETTCSSSC--STTTHHHHHHHST---TCEEEEETTCCSCHH-HHTHHHHHHHHHHHHH
T ss_pred HHHhhccceEEEecCCCCCCC--HHHHHHHHHHhCC---CCEEEEECCCCCchH-HhCHHHHHHHHHHHcC
Confidence 567889999999999999998 7777777665532 258889999999763 5667788889999985
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.59 E-value=8.3e-15 Score=153.54 Aligned_cols=175 Identities=11% Similarity=0.096 Sum_probs=117.2
Q ss_pred HHHHHcCcEEEEcCCCCCCCCCChhhh---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 706 LLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 706 ~~la~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
..++++||.|+++ +.+|+|.+... ........+|+.+.++.+ +.+++.++||||||.+++.++.++|+
T Consensus 54 ~~~~~~g~~v~~~---D~~G~G~S~~~~~~~~~~~~~~~~i~~li~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~ 124 (283)
T d2rhwa1 54 GPFVDAGYRVILK---DSPGFNKSDAVVMDEQRGLVNARAVKGLMDAL------DIDRAHLVGNAMGGATALNFALEYPD 124 (283)
T ss_dssp HHHHHTTCEEEEE---CCTTSTTSCCCCCSSCHHHHHHHHHHHHHHHH------TCCCEEEEEETHHHHHHHHHHHHCGG
T ss_pred HHHHHCCCEEEEE---eCCCCcccccccccccccchhhhhcccccccc------cccccccccccchHHHHHHHHHHhhh
Confidence 3567899999994 55677776432 222334456666665554 23589999999999999999999999
Q ss_pred cccEEEEcccCCCC-C-CCCcCccc----------cc---------------c--------hhhh----hHHHH------
Q 002209 783 LFCCGIARSGAYNR-T-LTPFGFQN----------ED---------------R--------TLWE----ATSTY------ 817 (953)
Q Consensus 783 ~~~a~v~~~~~~d~-~-~~~~~~~~----------~~---------------~--------~~~~----~~~~~------ 817 (953)
+++++|++++..-. . ........ .. . ..+. .....
T Consensus 125 ~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (283)
T d2rhwa1 125 RIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLIS 204 (283)
T ss_dssp GEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGGCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hcceEEEeCCCcCCcchhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHhhcccccCcHHHHHHHHHHhhhhhhhhhhhhhh
Confidence 99999998764211 0 00000000 00 0 0000 00000
Q ss_pred ------HhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHH
Q 002209 818 ------VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETD 891 (953)
Q Consensus 818 ------~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 891 (953)
...+....+.++++|+|+++|++|..+| ++.+.++.+.+. .+++++++++||... .++.+.+.+.+.
T Consensus 205 ~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~ 277 (283)
T d2rhwa1 205 AQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVP--LDHGLKLLWNID----DARLHVFSKCGHWAQ-WEHADEFNRLVI 277 (283)
T ss_dssp HHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSC--THHHHHHHHHSS----SEEEEEESSCCSCHH-HHTHHHHHHHHH
T ss_pred hhhhhccccchHHHHhhCCCCEEEEEeCCCCCcC--HHHHHHHHHhCC----CCEEEEECCCCCchH-HhCHHHHHHHHH
Confidence 0112344566789999999999999998 888888877663 368999999999753 566778888899
Q ss_pred HHHHH
Q 002209 892 RWLQK 896 (953)
Q Consensus 892 ~fl~~ 896 (953)
+||++
T Consensus 278 ~FLk~ 282 (283)
T d2rhwa1 278 DFLRH 282 (283)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99875
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=7.7e-15 Score=156.90 Aligned_cols=215 Identities=15% Similarity=0.089 Sum_probs=137.1
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC
Q 002209 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (953)
Q Consensus 643 ~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (953)
.++..||.+|+..-+ + . -|+||++||.+... ..| ......|+++||.|++ .|
T Consensus 15 ~v~~~~g~~i~y~~~---G-----~--gp~vlllHG~~~~~-----------~~~----~~~~~~L~~~g~~vi~---~D 66 (322)
T d1zd3a2 15 YVTVKPRVRLHFVEL---G-----S--GPAVCLCHGFPESW-----------YSW----RYQIPALAQAGYRVLA---MD 66 (322)
T ss_dssp EEEEETTEEEEEEEE---C-----C--SSEEEEECCTTCCG-----------GGG----TTHHHHHHHTTCEEEE---EE
T ss_pred EEEECCCCEEEEEEE---c-----C--CCeEEEECCCCCCH-----------HHH----HHHHHHHHHCCCEEEE---ec
Confidence 345568988886654 2 1 37899999964221 112 2346678899999999 45
Q ss_pred CCCCCChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC
Q 002209 723 IIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (953)
Q Consensus 723 ~~G~G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~ 798 (953)
.+|+|.+.... ........|+.+.++.+ +.+++.++||||||.+++.+|.++|++++++|++++......
T Consensus 67 ~~G~G~S~~~~~~~~~~~~~~~~~i~~l~~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~ 140 (322)
T d1zd3a2 67 MKGYGESSAPPEIEEYCMEVLCKEMVTFLDKL------GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPAN 140 (322)
T ss_dssp CTTSTTSCCCSCGGGGSHHHHHHHHHHHHHHH------TCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCCCC
T ss_pred cccccccccccccccccccccchhhhhhhhcc------cccccccccccchHHHHHHHHHhCCccccceEEEcccccccc
Confidence 56777774421 12345555555555543 346899999999999999999999999999998864321100
Q ss_pred CCc----------------------------------------------C-----------cc-c---c---cchhhh-h
Q 002209 799 TPF----------------------------------------------G-----------FQ-N---E---DRTLWE-A 813 (953)
Q Consensus 799 ~~~----------------------------------------------~-----------~~-~---~---~~~~~~-~ 813 (953)
... . .. . . .....+ .
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
T d1zd3a2 141 PNMSPLESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEE 220 (322)
T ss_dssp SSSCHHHHHHTCGGGHHHHHTTSTTHHHHHHHHTHHHHHHHHSCCTTSCCCCTTSHHHHTSSSTTSCSSCCCCTTCCHHH
T ss_pred cccchhhhhhccchhhhHHhhhccchhhhhhhhhHHHHHHHHhhccchhhhhHHHHhhhhccccccccchhhhhhccHHH
Confidence 000 0 00 0 0 000000 0
Q ss_pred H----HH------------------HHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC
Q 002209 814 T----ST------------------YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP 871 (953)
Q Consensus 814 ~----~~------------------~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~ 871 (953)
. .. .....+.....++++|+|+++|++|..++ ++...++.+.+ ...++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvl~i~G~~D~~~~--~~~~~~~~~~~----~~~~~~~i~ 294 (322)
T d1zd3a2 221 IQFYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLV--PQMSQHMEDWI----PHLKRGHIE 294 (322)
T ss_dssp HHHHHHHHHHHTTHHHHHTTSCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSC--GGGGTTGGGTC----TTCEEEEET
T ss_pred HHHHHHHHhhcccccccccccccccccccchhhhcccCCCCEEEEEeCCCCCCC--HHHHHHHHHhC----CCCEEEEEC
Confidence 0 00 00112223446789999999999999998 77766654443 235888999
Q ss_pred CCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 872 FESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 872 ~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
++||... .+..+.+.+.+.+||+.+-
T Consensus 295 ~~gH~~~-~e~p~~v~~~i~~FL~~~~ 320 (322)
T d1zd3a2 295 DCGHWTQ-MDKPTEVNQILIKWLDSDA 320 (322)
T ss_dssp TCCSCHH-HHSHHHHHHHHHHHHHHHT
T ss_pred CCCCchH-HhCHHHHHHHHHHHHhhcC
Confidence 9999763 5667788899999999864
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.58 E-value=1.2e-14 Score=148.84 Aligned_cols=197 Identities=10% Similarity=-0.011 Sum_probs=128.0
Q ss_pred cEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhh---hHHHHHHHHHHHH
Q 002209 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR---FVEQLVACAEAAV 747 (953)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~---~~~~~~~D~~~~~ 747 (953)
|.||++||.+... ..| ...+..|+++||.|++ +|.+|+|.+..... .......|+...
T Consensus 3 ~~vvllHG~~~~~-----------~~w----~~~~~~L~~~g~~vi~---~Dl~G~G~S~~~~~~~~~~~~~~~~~~~~- 63 (258)
T d1xkla_ 3 KHFVLVHGACHGG-----------WSW----YKLKPLLEAAGHKVTA---LDLAASGTDLRKIEELRTLYDYTLPLMEL- 63 (258)
T ss_dssp CEEEEECCTTCCG-----------GGG----TTHHHHHHHTTCEEEE---CCCTTSTTCCCCGGGCCSHHHHHHHHHHH-
T ss_pred CcEEEECCCCCCH-----------HHH----HHHHHHHHhCCCEEEE---ecCCCCCCCCCCCCCCcchHHHHHHHhhh-
Confidence 4688899964221 112 2346678899999999 56678888754322 233334443333
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCc------------------------Cc
Q 002209 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF------------------------GF 803 (953)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~------------------------~~ 803 (953)
+.... ...++.++|||+||.+++.++.++|++++.+|.+++......... ..
T Consensus 64 --~~~~~--~~~~~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (258)
T d1xkla_ 64 --MESLS--ADEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGS 139 (258)
T ss_dssp --HHTSC--SSSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSC
T ss_pred --hhccc--ccccccccccchhHHHHHHHhhhhccccceEEEecccCCCcccchHHHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 32222 235899999999999999999999999999999876532110000 00
Q ss_pred cccc------chh-----------hhh--------------HHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHH
Q 002209 804 QNED------RTL-----------WEA--------------TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSD 852 (953)
Q Consensus 804 ~~~~------~~~-----------~~~--------------~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~ 852 (953)
.... ... .+. ...+...........+++|+|+++|++|..+| ++..+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~ 217 (258)
T d1xkla_ 140 PEEPLTSMFFGPKFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIP--EEFQR 217 (258)
T ss_dssp TTSCCEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTT--HHHHH
T ss_pred hhhhcccccccHHHHHHHhhhcccHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccccceeEeeecCCCCCC--HHHHH
Confidence 0000 000 000 01112223334455678999999999999998 88888
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 853 RFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
.+.+.+.. +++++++++||.. ..+..+.+.+.+.+|+++|
T Consensus 218 ~~~~~~~~----~~~~~i~~~gH~~-~~e~P~~~~~~l~e~~~k~ 257 (258)
T d1xkla_ 218 WQIDNIGV----TEAIEIKGADHMA-MLCEPQKLCASLLEIAHKY 257 (258)
T ss_dssp HHHHHHCC----SEEEEETTCCSCH-HHHSHHHHHHHHHHHHHHC
T ss_pred HHHHHCCC----CEEEEECCCCCch-HHhCHHHHHHHHHHHHHhc
Confidence 88777643 4889999999975 3567888999999999886
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.58 E-value=6.2e-15 Score=153.02 Aligned_cols=213 Identities=15% Similarity=0.130 Sum_probs=133.1
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCC
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (953)
+.||.+++.... + + -|.||++||.+... ..+..+. ... ...++||.|+++ +.+|
T Consensus 8 ~~dg~~l~y~~~---G-----~--g~~vvllHG~~~~~-----------~~~~~~~-~~~-~~l~~~~~v~~~---D~~G 61 (268)
T d1j1ia_ 8 NAGGVETRYLEA---G-----K--GQPVILIHGGGAGA-----------ESEGNWR-NVI-PILARHYRVIAM---DMLG 61 (268)
T ss_dssp EETTEEEEEEEE---C-----C--SSEEEEECCCSTTC-----------CHHHHHT-TTH-HHHTTTSEEEEE---CCTT
T ss_pred EECCEEEEEEEE---c-----C--CCeEEEECCCCCCc-----------cHHHHHH-HHH-HHHhcCCEEEEE---cccc
Confidence 458998875432 2 1 25688899963110 0110111 112 234679999994 5567
Q ss_pred CCChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC---
Q 002209 726 EGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP--- 800 (953)
Q Consensus 726 ~G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~--- 800 (953)
+|.+... .........|+.+.++.+ . + ..++.++|||+||.+++.++.++|++++++|++++..-.....
T Consensus 62 ~G~S~~~~~~~~~~~~~~~~~~~i~~l---~-~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~ 136 (268)
T d1j1ia_ 62 FGKTAKPDIEYTQDRRIRHLHDFIKAM---N-F-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDL 136 (268)
T ss_dssp STTSCCCSSCCCHHHHHHHHHHHHHHS---C-C-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC-----
T ss_pred cccccCCccccccccccccchhhHHHh---h-h-cccceeeeccccccccchhhccChHhhheeeecCCCccccccchhh
Confidence 7776432 223455566666655443 2 2 2579999999999999999999999999999987642211000
Q ss_pred -----cCccc-----------------cc---chhhh-------------hHHHHHh----cCcccccCCCCCcEEEEEe
Q 002209 801 -----FGFQN-----------------ED---RTLWE-------------ATSTYVE----MSPFMSANKLKKPILLVHG 838 (953)
Q Consensus 801 -----~~~~~-----------------~~---~~~~~-------------~~~~~~~----~sp~~~~~~i~~P~Li~~G 838 (953)
..+.. .. ...+. ....+.. ......+.++++|+|+++|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G 216 (268)
T d1j1ia_ 137 RPIINYDFTREGMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQG 216 (268)
T ss_dssp -----CCSCHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEE
T ss_pred hhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhhhHhhCCCCEEEEEe
Confidence 00000 00 00000 0000111 1112346788999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
++|..+| ++.+.++.+.+. .++++++|++||... .++.+.+.+.+.+||.+
T Consensus 217 ~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~FL~~ 267 (268)
T d1j1ia_ 217 KDDKVVP--VETAYKFLDLID----DSWGYIIPHCGHWAM-IEHPEDFANATLSFLSL 267 (268)
T ss_dssp TTCSSSC--HHHHHHHHHHCT----TEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHH
T ss_pred CCCCCCC--HHHHHHHHHhCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHHcC
Confidence 9999998 888888777663 369999999999763 56678899999999976
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.58 E-value=5.3e-15 Score=144.53 Aligned_cols=161 Identities=12% Similarity=-0.087 Sum_probs=100.9
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
..+..|+++||.|+++++ .|.|... .+|... .+.+.......++.|+||||||.+++.++.++|.
T Consensus 21 ~l~~~L~~~G~~v~~~d~---p~~~~~~---------~~~~~~---~l~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~~~ 85 (186)
T d1uxoa_ 21 WLKKRLLADGVQADILNM---PNPLQPR---------LEDWLD---TLSLYQHTLHENTYLVAHSLGCPAILRFLEHLQL 85 (186)
T ss_dssp HHHHHHHHTTCEEEEECC---SCTTSCC---------HHHHHH---HHHTTGGGCCTTEEEEEETTHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCCEEEEecc---CCCCcch---------HHHHHH---HHHHHHhccCCCcEEEEechhhHHHHHHHHhCCc
Confidence 456778999999999666 4554431 222233 3333323345799999999999999999999986
Q ss_pred cc--cEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHh
Q 002209 783 LF--CCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (953)
Q Consensus 783 ~~--~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~ 860 (953)
.. .+++..++.............. ..+ ..+.....++..|+|++||++|.+|| +++++++++.+.
T Consensus 86 ~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~~~~p~lvi~g~~D~~vp--~~~~~~l~~~~~- 152 (186)
T d1uxoa_ 86 RAALGGIILVSGFAKSLPTLQMLDEF--TQG--------SFDHQKIIESAKHRAVIASKDDQIVP--FSFSKDLAQQID- 152 (186)
T ss_dssp SSCEEEEEEETCCSSCCTTCGGGGGG--TCS--------CCCHHHHHHHEEEEEEEEETTCSSSC--HHHHHHHHHHTT-
T ss_pred cceeeEEeecccccccchhhhhhhhh--hcc--------cccccccccCCCCEEEEecCCCCCCC--HHHHHHHHHHcC-
Confidence 44 3344444433221111000000 000 00111112245899999999999999 999999988772
Q ss_pred CCCcEEEEEeCCCCccCCCc--ccHHHHHHHHHHHHH
Q 002209 861 HGALCRLVILPFESHGYAAR--ESIMHVLWETDRWLQ 895 (953)
Q Consensus 861 ~g~~~~~~~~~~~~H~~~~~--~~~~~~~~~i~~fl~ 895 (953)
.+++++|++||..... .....+++.+.+||.
T Consensus 153 ----~~~~~~~~~gH~~~~~~~~~~~~~~~~l~~~~~ 185 (186)
T d1uxoa_ 153 ----AALYEVQHGGHFLEDEGFTSLPIVYDVLTSYFS 185 (186)
T ss_dssp ----CEEEEETTCTTSCGGGTCSCCHHHHHHHHHHHH
T ss_pred ----CEEEEeCCCCCcCccccCcccHHHHHHHHHHHc
Confidence 4899999999965321 233567777777775
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.58 E-value=1.3e-14 Score=151.22 Aligned_cols=245 Identities=15% Similarity=0.187 Sum_probs=148.0
Q ss_pred ceEEEEEEcC-CCcEEEEEEEcCCCCCCC---CCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCc
Q 002209 638 QKELIKYQRK-DGVQLSATLYLPPGYDPS---KDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (953)
Q Consensus 638 ~~~~~~~~~~-dg~~~~~~l~~P~~~~~~---~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (953)
+..++++.+. -|.++...+|+|+++... +++++|||+++||.... .+.|...+ .......+.|+
T Consensus 13 ~~~~~s~~S~~l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~-----------~~~w~~~~-~~~~~~~~~~~ 80 (299)
T d1pv1a_ 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCT-----------PDNASEKA-FWQFQADKYGF 80 (299)
T ss_dssp EEEEEEEECSSSSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCC-----------HHHHHHHS-CHHHHHHHHTC
T ss_pred EEEEEEEECcccCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCC-----------HHHHHHhh-hHHHHHHHcCC
Confidence 4566677655 478899999999988532 34579999999995311 11111111 12334556899
Q ss_pred EEEEcCCCCC-------------CCCCChhh----------hhhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEEe
Q 002209 714 AILGGPTTPI-------------IGEGDEEA----------NDRFVEQLVACAEAAVEEVVRR----GVAHPSKIAVGGH 766 (953)
Q Consensus 714 ~V~~~~~~~~-------------~G~G~~~~----------~~~~~~~~~~D~~~~~~~l~~~----~~~d~~~i~l~G~ 766 (953)
+|+.+..... .|.+.++. ...+....++++...|+..-.. ...+.++.+|+|+
T Consensus 81 ~vv~~~~~p~~~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~ 160 (299)
T d1pv1a_ 81 AIVFPDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGH 160 (299)
T ss_dssp EEEECCSSCCSTTSCCCTTCCSSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEE
T ss_pred ceecCCCcccccccCCcccccccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEee
Confidence 9998542111 01111111 1123344555555555443211 1123468999999
Q ss_pred ChHHHHHHHHHHh--CCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCC---C-CCcEEEEEeCC
Q 002209 767 SYGAFMTANLLAH--APHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK---L-KKPILLVHGEE 840 (953)
Q Consensus 767 S~GG~~a~~~a~~--~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~---i-~~P~Li~~G~~ 840 (953)
||||+.|+.++.+ +|++|.++++.+|+.+.....+..........+....+...++...+.+ . ..++++.+|++
T Consensus 161 SmGG~gAl~~al~~~~p~~f~~~~s~s~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~G~~ 240 (299)
T d1pv1a_ 161 SMGGYGAICGYLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDS 240 (299)
T ss_dssp THHHHHHHHHHHHTGGGTCCSEEEEESCCCCSTTSHHHHHHHHHHSCC----CGGGCHHHHGGGSCCCTTCCEEEECCTT
T ss_pred cccHHHHHHHHHHhcCCCceEEEeeccCcCCcccccchhhhhhhhcccchhhhhhcCHHHHHHHhhccCCcceeEecCCC
Confidence 9999999999986 4799999999999877544322211111111111222233444433332 2 35688889999
Q ss_pred CCCCCCchH-HHHHHHHHHHhCCCc--EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 841 DNNSGTLTM-QSDRFFNALKGHGAL--CRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 841 D~~v~~~~~-~~~~~~~~l~~~g~~--~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
|...+ .. ..+.+.++++.++.+ +++...||.+|.+. .+...+...+.|+.++|+
T Consensus 241 D~~~~--~~~~~~~f~~~~~~~g~~~~~~~~~~~G~~Hsw~---yW~~~i~~~l~f~a~~lg 297 (299)
T d1pv1a_ 241 DPFLE--EHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYY---FVSTFVPEHAEFHARNLG 297 (299)
T ss_dssp CTTTT--TTCCTHHHHHHHTTSTTTTSEEEECCTTCCSSHH---HHHHHHHHHHHHHHHHTT
T ss_pred Ccchh--hhhcHHHHHHHHHhcCCCcceEEEecCCCCcCHH---HHHHHHHHHHHHHHHhcC
Confidence 98764 32 357788999888765 77878888889862 345667777899998875
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.57 E-value=3.6e-14 Score=147.71 Aligned_cols=197 Identities=13% Similarity=0.087 Sum_probs=123.3
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh--hhHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAV 747 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~~~ 747 (953)
-|.||++||.+... ..| ......|+++||.|+++| .+|+|.+.... ......++|+.+.+
T Consensus 23 G~~ivllHG~~~~~-----------~~~----~~~~~~l~~~g~~vi~~D---~~G~G~S~~~~~~~~~~~~~~dl~~~l 84 (277)
T d1brta_ 23 GQPVVLIHGFPLSG-----------HSW----ERQSAALLDAGYRVITYD---RRGFGQSSQPTTGYDYDTFAADLNTVL 84 (277)
T ss_dssp SSEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEEEC---CTTSTTSCCCSSCCSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCH-----------HHH----HHHHHHHHhCCCEEEEEe---CCCCCcccccccccchhhhhhhhhhhh
Confidence 46688999964211 111 234556888999999954 46777774322 23566777877777
Q ss_pred HHHHHcCCCCCCcEEEEEeChHH-HHHHHHHHhCCCcccEEEEcccCCCCCCCC----cCcccc------------cch-
Q 002209 748 EEVVRRGVAHPSKIAVGGHSYGA-FMTANLLAHAPHLFCCGIARSGAYNRTLTP----FGFQNE------------DRT- 809 (953)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG-~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~----~~~~~~------------~~~- 809 (953)
+.+ +.+++.++|||||| .++..++.++|++++++|+++++....... ...... ...
T Consensus 85 ~~l------~~~~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (277)
T d1brta_ 85 ETL------DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYA 158 (277)
T ss_dssp HHH------TCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHH
T ss_pred hcc------CcccccccccccchhhhhHHHHHhhhcccceEEEecCCCcccccchhhhhhhhhhhHHHHHHHhhhccchh
Confidence 665 23589999999996 456667778899999999987653211100 000000 000
Q ss_pred ----hhhh-----------------H------------HHHHh-----cCcccccCCCCCcEEEEEeCCCCCCCCchHHH
Q 002209 810 ----LWEA-----------------T------------STYVE-----MSPFMSANKLKKPILLVHGEEDNNSGTLTMQS 851 (953)
Q Consensus 810 ----~~~~-----------------~------------~~~~~-----~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~ 851 (953)
.+.. . ..+.. .+....+.++++|+|+++|++|..++ ++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~--~~~~ 236 (277)
T d1brta_ 159 FYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLP--IENT 236 (277)
T ss_dssp HHHHHHHHHTTHHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEETTCSSSC--GGGT
T ss_pred hhhhccccccccchhhhhhhhHHHhhhhhcccchhhhhhhhhhhhhhhhhHHHHHHhcCccceeEeecCCCCcC--HHHH
Confidence 0000 0 00000 01123356678999999999999988 7765
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
.+.+.+.- ...+++++|++||... .++.+.+.+.|.+||++
T Consensus 237 ~~~~~~~~---~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fL~k 277 (277)
T d1brta_ 237 ARVFHKAL---PSAEYVEVEGAPHGLL-WTHAEEVNTALLAFLAK 277 (277)
T ss_dssp HHHHHHHC---TTSEEEEETTCCTTHH-HHTHHHHHHHHHHHHHC
T ss_pred HHHHHHhC---CCCEEEEECCCCCchH-HhCHHHHHHHHHHHHCc
Confidence 55444331 2358899999999763 56778888999999874
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.57 E-value=9.9e-15 Score=155.71 Aligned_cols=121 Identities=14% Similarity=-0.010 Sum_probs=83.6
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
+.-.++..||.+++...+-.++ -|.||++||++... ..+ .....+++.||.|++
T Consensus 12 ~~~~i~~~dg~~i~y~~~G~~~--------g~pvvllHG~~g~~-----------~~~-----~~~~~~l~~~~~Vi~-- 65 (313)
T d1azwa_ 12 QQGSLKVDDRHTLYFEQCGNPH--------GKPVVMLHGGPGGG-----------CND-----KMRRFHDPAKYRIVL-- 65 (313)
T ss_dssp EEEEEECSSSCEEEEEEEECTT--------SEEEEEECSTTTTC-----------CCG-----GGGGGSCTTTEEEEE--
T ss_pred CCCEEEeCCCcEEEEEEecCCC--------CCEEEEECCCCCCc-----------cch-----HHHhHHhhcCCEEEE--
Confidence 4445677899999877774321 35578899975221 111 112233568999999
Q ss_pred CCCCCCCCChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 720 TTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 720 ~~~~~G~G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
.|.+|+|.|.... ........|+...++.+ ..+++.|+||||||.+++.++.++|+++++++..++.
T Consensus 66 -~D~rG~G~S~~~~~~~~~~~~~~~~dl~~~~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~ 136 (313)
T d1azwa_ 66 -FDQRGSGRSTPHADLVDNTTWDLVADIERLRTHL------GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF 136 (313)
T ss_dssp -ECCTTSTTSBSTTCCTTCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred -EeccccCCCCccccccchhHHHHHHHHHHHHHhh------ccccceeEEecCCcHHHHHHHHHhhhceeeeeEeccc
Confidence 5556888885421 12455666666666654 2358999999999999999999999999999988764
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.57 E-value=6e-15 Score=157.08 Aligned_cols=214 Identities=12% Similarity=0.041 Sum_probs=134.6
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCC
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (953)
+.+|.+++..-.-++ ...|+||++||.+.... .| ......|+++||.|++ .+.+|
T Consensus 30 ~~~g~~~~y~~~G~~-------~~~p~llllHG~~~~~~-----------~~----~~~~~~l~~~~~~vi~---~Dl~G 84 (310)
T d1b6ga_ 30 GYPGLRAHYLDEGNS-------DAEDVFLCLHGEPTWSY-----------LY----RKMIPVFAESGARVIA---PDFFG 84 (310)
T ss_dssp TCTTCEEEEEEEECT-------TCSCEEEECCCTTCCGG-----------GG----TTTHHHHHHTTCEEEE---ECCTT
T ss_pred CCCCEEEEEEEecCC-------CCCCEEEEECCCCCchH-----------HH----HHHHHHhhccCceEEE---eeecC
Confidence 458888876554332 23689999999643211 11 1234578899999999 55578
Q ss_pred CCChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC-
Q 002209 726 EGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP- 800 (953)
Q Consensus 726 ~G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~- 800 (953)
+|.+.... ......++|+.+.++.+ +.+++.|+||||||.+++.+|.++|++++++|++++..-.....
T Consensus 85 ~G~S~~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~~~~~~~~~ 158 (310)
T d1b6ga_ 85 FGKSDKPVDEEDYTFEFHRNFLLALIERL------DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQ 158 (310)
T ss_dssp STTSCEESCGGGCCHHHHHHHHHHHHHHH------TCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTC
T ss_pred ccccccccccccccccccccchhhhhhhc------cccccccccceecccccccchhhhccccceEEEEcCccCCCcccc
Confidence 88875431 13556666666666554 24689999999999999999999999999999987653211000
Q ss_pred -----cCccc-cc----------------chh---------hhhHHHHHh-------------------c----------
Q 002209 801 -----FGFQN-ED----------------RTL---------WEATSTYVE-------------------M---------- 820 (953)
Q Consensus 801 -----~~~~~-~~----------------~~~---------~~~~~~~~~-------------------~---------- 820 (953)
+.... .. ... ......|.. .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (310)
T d1b6ga_ 159 PAFSAFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDIST 238 (310)
T ss_dssp THHHHTTTSSTTTHHHHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHH
T ss_pred hhHHHHhhcchhhhhhhhhhhccchhhhhhhhhhccCccccHHHHHHHHhhcchhhhhhcchhhhhhhhhhhhhhhhhhh
Confidence 00000 00 000 000000100 0
Q ss_pred -CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 821 -SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 821 -sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
.......++++|+|+++|++|..++ +....++.+.+... .++++++++||.. ..+..+.+.+.+.+|++.
T Consensus 239 ~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~~~~---~~~~~i~~~GH~~-~~e~pe~v~~~i~~Fl~~ 309 (310)
T d1b6ga_ 239 EAISFWQNDWNGQTFMAIGMKDKLLG--PDVMYPMKALINGC---PEPLEIADAGHFV-QEFGEQVAREALKHFAET 309 (310)
T ss_dssp HHHHHHHHTCCSEEEEEEETTCSSSS--HHHHHHHHHHSTTC---CCCEEETTCCSCG-GGGHHHHHHHHHHHHHHT
T ss_pred hhhHHhhcccCCCeEEEEeCCCCCCC--HHHHHHHHHhcCCC---ccEEEECCCcCch-hhhCHHHHHHHHHHHHhC
Confidence 0001124678999999999999988 77777776655443 3677899999965 355566677777788763
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.56 E-value=1.1e-14 Score=151.37 Aligned_cols=212 Identities=12% Similarity=0.071 Sum_probs=131.0
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCC
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (953)
..+|.+++...+ + + -|.||++||.+... ..+..+.. .. ..+++||.|++ ++.+|
T Consensus 9 ~~~G~~~~Y~~~---G-----~--G~pvvllHG~~~~~-----------~~~~~~~~-~~-~~l~~~~~vi~---~Dl~G 62 (271)
T d1uk8a_ 9 LAAGVLTNYHDV---G-----E--GQPVILIHGSGPGV-----------SAYANWRL-TI-PALSKFYRVIA---PDMVG 62 (271)
T ss_dssp EETTEEEEEEEE---C-----C--SSEEEEECCCSTTC-----------CHHHHHTT-TH-HHHTTTSEEEE---ECCTT
T ss_pred EECCEEEEEEEE---e-----e--CCeEEEECCCCCCc-----------cHHHHHHH-HH-HHHhCCCEEEE---EeCCC
Confidence 458888876554 1 1 25678899953211 11111111 12 22357999999 55567
Q ss_pred CCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCc-
Q 002209 726 EGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF- 801 (953)
Q Consensus 726 ~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~- 801 (953)
+|.+.... ........++...++.+ +.+++.++||||||.+++.++.++|++++++|+.++.........
T Consensus 63 ~G~S~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~ 136 (271)
T d1uk8a_ 63 FGFTDRPENYNYSKDSWVDHIIGIMDAL------EIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEG 136 (271)
T ss_dssp STTSCCCTTCCCCHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHH
T ss_pred CCCccccccccccccccchhhhhhhhhh------cCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhh
Confidence 88774322 22333444443333332 346899999999999999999999999999998876532111000
Q ss_pred -----Cccc----------------cc--chhhh----------hHHHHH-------------hcCcccccCCCCCcEEE
Q 002209 802 -----GFQN----------------ED--RTLWE----------ATSTYV-------------EMSPFMSANKLKKPILL 835 (953)
Q Consensus 802 -----~~~~----------------~~--~~~~~----------~~~~~~-------------~~sp~~~~~~i~~P~Li 835 (953)
.+.. .. ..... ..+.+. .......+.++++|+|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~li 216 (271)
T d1uk8a_ 137 LNAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLI 216 (271)
T ss_dssp HHHHHTCCSCHHHHHHHHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHTTCCSCEEE
T ss_pred hhhhhhccchhHHHHHHHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHHhhccceeE
Confidence 0000 00 00000 000111 11222345788999999
Q ss_pred EEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 836 ~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
++|++|..+| +..+..+.+.+. .++++++|++||.. ..++.+.+.+.|.+||++
T Consensus 217 i~G~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~-~~e~p~~~~~~i~~Fl~e 270 (271)
T d1uk8a_ 217 IHGREDQVVP--LSSSLRLGELID----RAQLHVFGRCGHWT-QIEQTDRFNRLVVEFFNE 270 (271)
T ss_dssp EEETTCSSSC--HHHHHHHHHHCT----TEEEEEESSCCSCH-HHHTHHHHHHHHHHHHHT
T ss_pred EecCCCCCcC--HHHHHHHHHhCC----CCEEEEECCCCCch-HHHCHHHHHHHHHHHHhc
Confidence 9999999998 888877776653 36899999999975 356778888999999975
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.55 E-value=2.1e-13 Score=136.55 Aligned_cols=118 Identities=20% Similarity=0.177 Sum_probs=91.8
Q ss_pred cCCCCCCcEEEEEeChHHHHHHHHHHh-CCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCC
Q 002209 753 RGVAHPSKIAVGGHSYGAFMTANLLAH-APHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKK 831 (953)
Q Consensus 753 ~~~~d~~~i~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~ 831 (953)
...+|++|++++|+|+||++++.++.. .+..+.++|++++.......... ......++
T Consensus 100 ~~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~---------------------~~~~~~~~ 158 (218)
T d1auoa_ 100 RTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFGDELE---------------------LSASQQRI 158 (218)
T ss_dssp HTTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCCTTCC---------------------CCHHHHTC
T ss_pred HhCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCcccccccc---------------------cchhccCC
Confidence 345899999999999999999988764 45679999998875321110000 00011257
Q ss_pred cEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 832 PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 832 P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
|+|++||+.|.+|| ++.++++++.|++.|.+++++.|+ .+|.+. .+.+..+.+||.+.|+
T Consensus 159 pvl~~hG~~D~vvp--~~~~~~~~~~L~~~g~~~~~~~~~-~gH~i~-----~~~~~~i~~wl~~~lg 218 (218)
T d1auoa_ 159 PALCLHGQYDDVVQ--NAMGRSAFEHLKSRGVTVTWQEYP-MGHEVL-----PQEIHDIGAWLAARLG 218 (218)
T ss_dssp CEEEEEETTCSSSC--HHHHHHHHHHHHTTTCCEEEEEES-CSSSCC-----HHHHHHHHHHHHHHHC
T ss_pred CEEEEecCCCCccC--HHHHHHHHHHHHHCCCCEEEEEEC-CCCccC-----HHHHHHHHHHHHHhcC
Confidence 99999999999999 999999999999999999999998 589875 3456789999998874
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.54 E-value=3e-14 Score=148.55 Aligned_cols=209 Identities=15% Similarity=0.113 Sum_probs=126.3
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCcc--chHHHHHHH----
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIG--STSVLLWLA---- 710 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~---- 710 (953)
-.++.+++++.+| +..+++|+|++|++++ ++|+|+++||+...... .+...+ ......+.+
T Consensus 25 g~v~~~~~~~~~~-~r~~~vylP~~y~~~k--~yPvl~~lhG~~g~~~~----------~~~~~~~~~~~~~~~~~~~~~ 91 (273)
T d1wb4a1 25 GRIVKETYTGING-TKSLNVYLPYGYDPNK--KYNIFYLMHGGGENENT----------IFSNDVKLQNILDHAIMNGEL 91 (273)
T ss_dssp CEEEEEEEEETTE-EEEEEEEECTTCCTTS--CCEEEEEECCTTCCTTS----------TTSTTTCHHHHHHHHHHHTSS
T ss_pred CeEEEEEEecCCC-eEEEEEEeCCCCCCCC--CceEEEEEeCCCCCcch----------hhhhccchhHHHHhhhhhhcc
Confidence 4678899999887 5699999999998665 59999999997532211 111111 111122222
Q ss_pred cCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHH---------HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC
Q 002209 711 RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEA---------AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP 781 (953)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~---------~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p 781 (953)
..++|+.++..+..+.+.... .....+... .+..+.....+|+++++|+|+|+||++|+.++.++|
T Consensus 92 ~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~p 166 (273)
T d1wb4a1 92 EPLIVVTPTFNGGNCTAQNFY-----QEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCL 166 (273)
T ss_dssp CCEEEEECCSCSTTCCTTTHH-----HHHHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHT
T ss_pred CCceeeccccCCCCCccccch-----hcccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCC
Confidence 468888877765554444321 111111111 112222334478999999999999999999999999
Q ss_pred CcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHH--
Q 002209 782 HLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK-- 859 (953)
Q Consensus 782 ~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~-- 859 (953)
++|+++++++|.+....... ............ ........++++.+|+.|.. ......+.+.+.
T Consensus 167 d~f~a~~~~sg~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~ 232 (273)
T d1wb4a1 167 DYVAYFMPLSGDYWYGNSPQ------DKANSIAEAINR----SGLSKREYFVFAATGSEDIA----YANMNPQIEAMKAL 232 (273)
T ss_dssp TTCCEEEEESCCCCBSSSHH------HHHHHHHHHHHH----HTCCTTSCEEEEEEETTCTT----HHHHHHHHHHHHTS
T ss_pred CcceEEEEeCcccccCCCcc------cccccchhhhhh----hhhcccceEEEEecCCCCcc----cccchhHHHHHHHH
Confidence 99999999998754322110 000000011111 11223345677778887754 444445544443
Q ss_pred --------hCCCcEEEEEeCCCCccC
Q 002209 860 --------GHGALCRLVILPFESHGY 877 (953)
Q Consensus 860 --------~~g~~~~~~~~~~~~H~~ 877 (953)
..++.+.+..+++++|.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ggH~w 258 (273)
T d1wb4a1 233 PHFDYTSDFSKGNFYFLVAPGATHWW 258 (273)
T ss_dssp TTCCBBSCTTTCCEEEEEETTCCSSH
T ss_pred HHHHHHHHhcCCCEEEEEECCCccCH
Confidence 335678888999999965
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.54 E-value=2.2e-14 Score=147.05 Aligned_cols=179 Identities=9% Similarity=-0.041 Sum_probs=115.9
Q ss_pred HHHHHHHcCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002209 704 SVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
.+..|+++||.|++ .|.+|+|.+.... .......+|+.+.+ .+.. ..+++.|+||||||.+++.++.++
T Consensus 21 ~~~~L~~~g~~Via---~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~~---~~~~--~~~~~~lvGhS~Gg~ia~~~a~~~ 92 (256)
T d3c70a1 21 LKPLLEALGHKVTA---LDLAASGVDPRQIEEIGSFDEYSEPLLTFL---EALP--PGEKVILVGESCGGLNIAIAADKY 92 (256)
T ss_dssp HHHHHHHTTCEEEE---ECCTTSTTCSCCGGGCCSHHHHTHHHHHHH---HHSC--TTCCEEEEEETTHHHHHHHHHHHH
T ss_pred HHHHHHhCCCEEEE---EcCCCCCCCCCCCCCCCCHHHHHHHhhhhh---hhhc--cccceeecccchHHHHHHHHhhcC
Confidence 45678889999999 4556888775432 22444455544443 3332 246899999999999999999999
Q ss_pred CCcccEEEEcccCCCCCCCCcCc--------------------cc--------ccchhh------------hhH------
Q 002209 781 PHLFCCGIARSGAYNRTLTPFGF--------------------QN--------EDRTLW------------EAT------ 814 (953)
Q Consensus 781 p~~~~a~v~~~~~~d~~~~~~~~--------------------~~--------~~~~~~------------~~~------ 814 (953)
|++++++|.+++........... .. ...... ...
T Consensus 93 p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (256)
T d3c70a1 93 CEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPEEYELAKMLT 172 (256)
T ss_dssp GGGEEEEEEESCCCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHHHHHHHTSTTSCHHHHHHHHHHC
T ss_pred chhhhhhheeccccCCcccchhhHhhhhhhhhhhhhhhHHHhhhccccccchhhhhhhhhhhhhhhhcchhhHHHhhhhh
Confidence 99999999987653211100000 00 000000 000
Q ss_pred -------HHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHH
Q 002209 815 -------STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVL 887 (953)
Q Consensus 815 -------~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~ 887 (953)
..............+++|+++++|++|..+| ++..+++.+.+. ..++++++++||.. ..++.+++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~p----~~~~~~i~~agH~~-~~e~P~~~~ 245 (256)
T d3c70a1 173 RKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFL--PEFQLWQIENYK----PDKVYKVEGGDHKL-QLTKTKEIA 245 (256)
T ss_dssp CCBCCCHHHHTTSCCCCTTTGGGSCEEEEECTTCSSSC--HHHHHHHHHHSC----CSEEEECCSCCSCH-HHHSHHHHH
T ss_pred hhhhHHHhhhhhcchhhhhhccccceeEEeecCCCCCC--HHHHHHHHHHCC----CCEEEEECCCCCch-HHhCHHHHH
Confidence 0000111122334457899999999999998 877777766553 34889999999976 356778888
Q ss_pred HHHHHHHHHh
Q 002209 888 WETDRWLQKY 897 (953)
Q Consensus 888 ~~i~~fl~~~ 897 (953)
+.+.+|+++|
T Consensus 246 ~~l~~~~~~~ 255 (256)
T d3c70a1 246 EILQEVADTY 255 (256)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 8899998875
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.54 E-value=1.7e-13 Score=149.80 Aligned_cols=257 Identities=12% Similarity=0.121 Sum_probs=153.6
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCC
Q 002209 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (953)
Q Consensus 109 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~ 188 (953)
.++..++|||||++||+...+ +.|.||++.. ++......+.++ .
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~---------------------------------~~i~iw~~~~-~~~~~~~~l~gH--~ 51 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNN---------------------------------HEVHIYEKSG-NKWVQVHELKEH--N 51 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSS---------------------------------SEEEEEEEET-TEEEEEEEEECC--S
T ss_pred CCeEEEEECCCCCEEEEEeCC---------------------------------CEEEEEECCC-CCEEEEEEecCC--C
Confidence 357889999999999988764 3678999853 211122233332 2
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+....|||||++|+.... +..|+++++++++..+...... .+..+..+.|+|||+.|+....+
T Consensus 52 ~~V~~l~fsp~~~~l~s~s~---------D~~i~vWd~~~~~~~~~~~~~~--~~~~v~~i~~~p~~~~l~~~s~d---- 116 (371)
T d1k8kc_ 52 GQVTGVDWAPDSNRIVTCGT---------DRNAYVWTLKGRTWKPTLVILR--INRAARCVRWAPNEKKFAVGSGS---- 116 (371)
T ss_dssp SCEEEEEEETTTTEEEEEET---------TSCEEEEEEETTEEEEEEECCC--CSSCEEEEEECTTSSEEEEEETT----
T ss_pred CCEEEEEECCCCCEEEEEEC---------CCeEEEEeeccccccccccccc--ccccccccccccccccceeeccc----
Confidence 46899999999999887542 3466667776665433321111 11226789999999999876210
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc--eeEeCC-C-CcccccccCCCC
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGP-P-AVYTSLDPSPDE 343 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~--~~~l~~-~-~~~~~~~~SpDG 343 (953)
+.-.+|.++. ... ...... . ..+..++|+|||
T Consensus 117 -------------------------------------------~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 153 (371)
T d1k8kc_ 117 -------------------------------------------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 153 (371)
T ss_dssp -------------------------------------------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred -------------------------------------------Ccceeeeeecccccccccccccccccccccccccccc
Confidence 2223444444 221 112222 2 567789999999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEecc-CCCcccCC-----ccccccccCccceeeccCCCCceEEE
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD-LPLAEDIP-----IAFNSVRKGMRSINWRSDKPSTLYWA 417 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~-~~~~~~~p-----~~~~~~~~~~~~~~wspDg~~i~~~~ 417 (953)
++|+..+.+. .+.+|+........... .......+ .........+..++|+|||+.++..
T Consensus 154 ~~l~s~s~D~-------------~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~- 219 (371)
T d1k8kc_ 154 VLLAAGSCDF-------------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV- 219 (371)
T ss_dssp SEEEEEETTS-------------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE-
T ss_pred cceeccccCc-------------EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccc-
Confidence 9998877443 78899886432211110 00000000 0111222345678999999987665
Q ss_pred EeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
+..+.+.+||+ ..+.....+..+...+.++.|+|||+.|+.. .++ ...+|.++...
T Consensus 220 ------------~~d~~i~iwd~--~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~--~~~~~~~~~~~ 275 (371)
T d1k8kc_ 220 ------------SHDSTVCLADA--DKKMAVATLASETLPLLAVTFITESSLVAAG-HDC--FPVLFTYDSAA 275 (371)
T ss_dssp ------------ETTTEEEEEEG--GGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTS--SCEEEEEETTT
T ss_pred ------------ccCCcceEEee--ecccceeeeecccccceeeeecCCCCEEEEE-cCC--ceEEEEeeCCC
Confidence 34567899996 2333333445555567789999999877643 232 23677777554
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.53 E-value=8.7e-13 Score=147.03 Aligned_cols=324 Identities=13% Similarity=0.061 Sum_probs=168.9
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCC-CC
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD-GA 189 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~-~~ 189 (953)
+..++|||||++|+....+ +.|.+||+.+ ++.....++..... ..
T Consensus 64 ~~~vafSPDGk~l~~~~~d---------------------------------~~v~vwd~~t-~~~~~~~~i~~~~~~~~ 109 (426)
T d1hzua2 64 VHISRMSASGRYLLVIGRD---------------------------------ARIDMIDLWA-KEPTKVAEIKIGIEARS 109 (426)
T ss_dssp EEEEEECTTSCEEEEEETT---------------------------------SEEEEEETTS-SSCEEEEEEECCSEEEE
T ss_pred eeEEEECCCCCEEEEEeCC---------------------------------CCEEEEEccC-CceeEEEEEeCCCCCcc
Confidence 4578999999999776654 2678999854 21111222321111 11
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..+.|||||++|+.... ....+.++|.++++...+....... +....+.+++...++......
T Consensus 110 ~~~s~~~spDG~~l~v~~~--------~~~~v~i~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~s~d~--- 174 (426)
T d1hzua2 110 VESSKFKGYEDRYTIAGAY--------WPPQFAIMDGETLEPKQIVSTRGMT----VDTQTYHPEPRVAAIIASHEH--- 174 (426)
T ss_dssp EEECCSTTCTTTEEEEEEE--------ESSEEEEEETTTCCEEEEEECCEEC----SSSCCEESCCCEEEEEECSSS---
T ss_pred eEEeeeecCCCCEEEEeec--------CCCeEEEEcCCccceeEEeeccCCC----ccceeecCCCceeEEEECCCC---
Confidence 4567889999999887553 2467888999988876554433221 334455555543332210000
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc---eeEeCCCCcccccccCCCCcE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPPAVYTSLDPSPDEKY 345 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~---~~~l~~~~~~~~~~~SpDG~~ 345 (953)
..+.. .......++.++. ++. ...+........+.|+|||++
T Consensus 175 ---------~~~~~-------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 220 (426)
T d1hzua2 175 ---------PEFIV-------------------------NVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRY 220 (426)
T ss_dssp ---------SEEEE-------------------------EETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCE
T ss_pred ---------CEEEE-------------------------ecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcE
Confidence 00000 0002345556665 442 233333356678899999999
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
++..... ...+.+++...+............ . ......+..++...++....
T Consensus 221 ~~~a~~~------------~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~------ 272 (426)
T d1hzua2 221 FMTAANN------------SNKVAVIDSKDRRLSALVDVGKTP---H-------PGRGANFVHPKYGPVWSTSH------ 272 (426)
T ss_dssp EEEEETT------------CSEEEEEETTTTEEEEEEECSSCC---C-------CSCCEEEEETTTEEEEEEEC------
T ss_pred EEeeeec------------ccceeeeecccccEEEEeccCCcc---c-------ccceeeeecCCCCceEEecc------
Confidence 8877632 236778888765554433221110 0 00122333333222222111
Q ss_pred ccccccCCeEEEEecCCC-----CCCCceEEeecccccCCeeeccCCceEEEEEecc---cCceEEEEEcCCCCCCCcEE
Q 002209 426 KVEVTPRDIIYTQQAEPV-----QGEGPEILHKLDLRYGGISWCDDSLALVYESWYK---TRRTRTWVISPGSKDVAPRI 497 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~-----~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~---~~~~~l~~~d~~~~~~~~~~ 497 (953)
.....+.+++.... .+.....+..+...+..++|||||++|+...... .....|.++|+.++......
T Consensus 273 ----~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~ 348 (426)
T d1hzua2 273 ----LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV 348 (426)
T ss_dssp ----TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred ----CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence 11223334332000 1122234555556678899999999998643211 00124666777765322222
Q ss_pred eec-------CCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEecc
Q 002209 498 LFD-------RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570 (953)
Q Consensus 498 ~~~-------~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~ 570 (953)
+.. .....+.. ++|||||+++++.....+ .....|.+||.+|++.......
T Consensus 349 ~~~~~~~~~~~~~~rv~~------~~fSpDGk~i~vs~~~~~----------------~~~~~i~v~D~~T~k~~~~i~~ 406 (426)
T d1hzua2 349 LPIAEWADLGEGAKRVVQ------PEYNKRGDEVWFSVWNGK----------------NDSSALVVVDDKTLKLKAVVKD 406 (426)
T ss_dssp ECHHHHHCCCSSCCCEEE------EEECSSSSEEEEEECCCT----------------TSCCEEEEEETTTTEEEEEECC
T ss_pred eccchhcccCCCCccEEE------EEECCCCCEEEEEEecCC----------------CCCCeEEEEECCCCeEEEEECC
Confidence 211 01111111 579999999987653211 1123499999999987765544
Q ss_pred C
Q 002209 571 D 571 (953)
Q Consensus 571 ~ 571 (953)
.
T Consensus 407 ~ 407 (426)
T d1hzua2 407 P 407 (426)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.53 E-value=6e-13 Score=145.83 Aligned_cols=281 Identities=14% Similarity=0.084 Sum_probs=163.3
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeee-----
Q 002209 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQ----- 183 (953)
Q Consensus 109 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~----- 183 (953)
..+..++|||||++||..+++ .|.||++.+ +. ....+.
T Consensus 63 ~~V~~l~fs~dg~~lasg~d~----------------------------------~i~iW~~~~-~~--~~~~~~~~~~~ 105 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGCNK----------------------------------TTQVYRVSD-GS--LVARLSDDSAA 105 (388)
T ss_dssp SCCCEEEECTTSSEEEEECBS----------------------------------CEEEEETTT-CC--EEEEECC----
T ss_pred CcEEEEEECCCCCEEEEEeCC----------------------------------eEEEEEecc-cc--eEeeecccccc
Confidence 368899999999999886542 567787743 21 111110
Q ss_pred -----------cCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEe
Q 002209 184 -----------GFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV 252 (953)
Q Consensus 184 -----------~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~ws 252 (953)
.......+...+|||||+.|+.... ...|.+++...++........... +..+.|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~---------dg~v~i~~~~~~~~~~~~~~h~~~----v~~~~~~ 172 (388)
T d1erja_ 106 NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE---------DRLIRIWDIENRKIVMILQGHEQD----IYSLDYF 172 (388)
T ss_dssp -------------CCCCBEEEEEECTTSSEEEEEET---------TSCEEEEETTTTEEEEEECCCSSC----EEEEEEC
T ss_pred cccccccccccccCCCCCEEEEEECCCCCcceeccc---------cccccccccccccccccccccccc----ccccccc
Confidence 0111225778899999999887552 457888898887765544332222 6788999
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeC-C
Q 002209 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG-P 330 (953)
Q Consensus 253 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~-~ 330 (953)
+++..++... ..+.+.+++. +....... .
T Consensus 173 ~~~~~~~~~~-------------------------------------------------~~~~i~~~d~~~~~~~~~~~~ 203 (388)
T d1erja_ 173 PSGDKLVSGS-------------------------------------------------GDRTVRIWDLRTGQCSLTLSI 203 (388)
T ss_dssp TTSSEEEEEE-------------------------------------------------TTSEEEEEETTTTEEEEEEEC
T ss_pred cccccccccc-------------------------------------------------cceeeeeeecccccccccccc
Confidence 9998888661 2234566676 44333222 2
Q ss_pred C-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeecc
Q 002209 331 P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRS 408 (953)
Q Consensus 331 ~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wsp 408 (953)
. .......+++||+.|+..+.+ +.|.+|+...+. ...+...... ..+....+..+.|+|
T Consensus 204 ~~~~~~~~~~~~~~~~l~~~~~d-------------~~i~i~~~~~~~~~~~~~~~~~~------~~~h~~~v~~l~~s~ 264 (388)
T d1erja_ 204 EDGVTTVAVSPGDGKYIAAGSLD-------------RAVRVWDSETGFLVERLDSENES------GTGHKDSVYSVVFTR 264 (388)
T ss_dssp SSCEEEEEECSTTCCEEEEEETT-------------SCEEEEETTTCCEEEEEC------------CCCSSCEEEEEECT
T ss_pred ccccccccccCCCCCeEEEEcCC-------------CeEEEeecccCccceeecccccc------ccCCCCCEEEEEECC
Confidence 2 223333455688888877643 379999998543 3333221100 012223456799999
Q ss_pred CCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc------------eEEeecccccCCeeeccCCceEEEEEec
Q 002209 409 DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP------------EILHKLDLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 409 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~------------~~l~~~~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
||+.++.. +..+.+.+|++ ..+... .....+...+..++|+|||+.|+.++.+
T Consensus 265 ~~~~l~s~-------------~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d 329 (388)
T d1erja_ 265 DGQSVVSG-------------SLDRSVKLWNL--QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329 (388)
T ss_dssp TSSEEEEE-------------ETTSEEEEEEC-----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT
T ss_pred CCCEEEEE-------------ECCCcEEEEec--cCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCC
Confidence 99977655 34557788875 111111 1112234456678999999998877654
Q ss_pred ccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 477 KTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 477 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
+ .|+++|+.++ +...........+....-.....|+|||++|+...
T Consensus 330 g----~i~vwd~~~~--~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s 375 (388)
T d1erja_ 330 R----GVLFWDKKSG--NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375 (388)
T ss_dssp S----EEEEEETTTC--CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred C----EEEEEECCCC--cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence 3 5667777765 33333333332222100011135899999888765
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.52 E-value=1.8e-14 Score=151.37 Aligned_cols=210 Identities=15% Similarity=0.122 Sum_probs=132.7
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|.+++...+-|++ .|+||++||.+... ..|. .....| ++||.|+++| .+|+
T Consensus 14 ~~g~~i~y~~~G~~~--------~p~lvllHG~~~~~-----------~~~~----~~~~~L-~~~~~vi~~d---~~G~ 66 (291)
T d1bn7a_ 14 VLGERMHYVDVGPRD--------GTPVLFLHGNPTSS-----------YLWR----NIIPHV-APSHRCIAPD---LIGM 66 (291)
T ss_dssp ETTEEEEEEEESCSS--------SSCEEEECCTTCCG-----------GGGT----TTHHHH-TTTSCEEEEC---CTTS
T ss_pred ECCEEEEEEEeCCCC--------CCeEEEECCCCCCH-----------HHHH----HHHHHH-hcCCEEEEEe---CCCC
Confidence 488999877765432 46688999964221 1121 123344 5699999954 4677
Q ss_pred CChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC-cC-
Q 002209 727 GDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-FG- 802 (953)
Q Consensus 727 G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~-~~- 802 (953)
|.+..+ .......++|+.++++.+ +.+++.|+||||||.+++.++.++|+++++++++++........ +.
T Consensus 67 G~S~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~~~~~~~~~~~~ 140 (291)
T d1bn7a_ 67 GKSDKPDLDYFFDDHVRYLDAFIEAL------GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPE 140 (291)
T ss_dssp TTSCCCSCCCCHHHHHHHHHHHHHHT------TCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEECCCBCSGGGSCH
T ss_pred ccccccccccchhHHHHHHhhhhhhh------ccccccccccccccchhHHHHHhCCcceeeeeeeccccCCccchhhhh
Confidence 777432 223455666666665553 34689999999999999999999999999999876543211000 00
Q ss_pred --------c--cc--------cc------------c-hhhhhHHHHH-----------------hcC-------------
Q 002209 803 --------F--QN--------ED------------R-TLWEATSTYV-----------------EMS------------- 821 (953)
Q Consensus 803 --------~--~~--------~~------------~-~~~~~~~~~~-----------------~~s------------- 821 (953)
+ .. .. . ........+. ...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T d1bn7a_ 141 FARETFQAFRTADVGRELIIDQNAFIEGVLPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNEIPIAGEPANIVALVE 220 (291)
T ss_dssp HHHHHHHHHTSTTHHHHHHTTSCHHHHTHHHHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHH
T ss_pred hhhhHHHHHhhhhhHHHhhhhhhhhHHhhhhhhccccchHHHHHHHHHHhcchhhhHHHHHHHHHhhhhhhhchhhhhhh
Confidence 0 00 00 0 0000000000 000
Q ss_pred -cccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 822 -PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 822 -p~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
....+.++++|+|+++|++|..+| +..+.++.+.++ ..++++++++||.. ..+..+.+.+.+.+||+.
T Consensus 221 ~~~~~~~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~----~~~~~~i~~~gH~~-~~e~p~~v~~~i~~fL~~ 289 (291)
T d1bn7a_ 221 AYMNWLHQSPVPKLLFWGTPGVLIP--PAEAARLAESLP----NCKTVDIGPGLHYL-QEDNPDLIGSEIARWLPG 289 (291)
T ss_dssp HHHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHHHST----TEEEEEEEEESSCG-GGTCHHHHHHHHHHHSGG
T ss_pred hhhhhhhcCCCCEEEEEeCCCCCcC--HHHHHHHHHHCC----CCEEEEECCCCCch-HHhCHHHHHHHHHHHHHh
Confidence 012235678999999999999998 888888777664 36899999999976 356677888888888753
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.52 E-value=1.3e-13 Score=143.53 Aligned_cols=196 Identities=15% Similarity=0.121 Sum_probs=119.9
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh--hhHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAV 747 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~~~ 747 (953)
-|.||++||.+.... .| ...+..|+++||.|++ ++.+|+|.+.... .......+|+.+.+
T Consensus 23 g~~illlHG~~~~~~-----------~~----~~~~~~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~di~~~i 84 (279)
T d1hkha_ 23 GQPVVLIHGYPLDGH-----------SW----ERQTRELLAQGYRVIT---YDRRGFGGSSKVNTGYDYDTFAADLHTVL 84 (279)
T ss_dssp SEEEEEECCTTCCGG-----------GG----HHHHHHHHHTTEEEEE---ECCTTSTTSCCCSSCCSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHH-----------HH----HHHHHHHHHCCCEEEE---EechhhCCccccccccchhhhhhhhhhhh
Confidence 467889999642110 11 2345567899999999 5556777774321 23566677777777
Q ss_pred HHHHHcCCCCCCcEEEEEeChHH-HHHHHHHHhCCCcccEEEEcccCCCCCCCC----cCccccc-----------ch--
Q 002209 748 EEVVRRGVAHPSKIAVGGHSYGA-FMTANLLAHAPHLFCCGIARSGAYNRTLTP----FGFQNED-----------RT-- 809 (953)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG-~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~----~~~~~~~-----------~~-- 809 (953)
+.+ +.+++.|+|||||| .++..++.++|+++++++++++........ ....... ..
T Consensus 85 ~~l------~~~~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
T d1hkha_ 85 ETL------DLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAW 158 (279)
T ss_dssp HHH------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHH
T ss_pred hhc------CcCccccccccccccchhhhhccccccccceeEEeeccCCccccchhhhhhhhHHHHHHHHHhhhhhhhhh
Confidence 665 33589999999996 556666777899999999987643211100 0000000 00
Q ss_pred ---hhhh-------------H-------HHHHhcC-----------------cccccCCCCCcEEEEEeCCCCCCCCchH
Q 002209 810 ---LWEA-------------T-------STYVEMS-----------------PFMSANKLKKPILLVHGEEDNNSGTLTM 849 (953)
Q Consensus 810 ---~~~~-------------~-------~~~~~~s-----------------p~~~~~~i~~P~Li~~G~~D~~v~~~~~ 849 (953)
.... . ....... .+..+.++++|+|+++|++|..++ .+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~ 236 (279)
T d1hkha_ 159 FTDFYKNFYNLDENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILP--ID 236 (279)
T ss_dssp HHHHHHHHHTHHHHBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSC--TT
T ss_pred hhhhhhhhcccchhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhcccccchhhhcccCCceEEEEcCCCCccC--HH
Confidence 0000 0 0000000 012234467999999999999987 65
Q ss_pred HH-HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 850 QS-DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 850 ~~-~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
.. +.+.+.+. .++++++|++||... .+..+.+.+.|.+||++
T Consensus 237 ~~~~~~~~~~p----~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~k 279 (279)
T d1hkha_ 237 ATARRFHQAVP----EADYVEVEGAPHGLL-WTHADEVNAALKTFLAK 279 (279)
T ss_dssp TTHHHHHHHCT----TSEEEEETTCCTTHH-HHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHHCc
Confidence 44 44434332 257889999999763 56677888899999864
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.50 E-value=1.6e-12 Score=139.49 Aligned_cols=306 Identities=10% Similarity=-0.029 Sum_probs=171.8
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCce-eeeecCCCCCcc
Q 002209 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE-IEIQGFPDGAKL 191 (953)
Q Consensus 113 ~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~-~~l~~~~~~~~~ 191 (953)
.|+||+||++|++...+ +.|.|||+.+ ++. +.+. ++.+...
T Consensus 1 g~a~~~~~~~l~~~~~~---------------------------------~~v~v~D~~t----~~~~~t~~-~~~~~~p 42 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTNYP---------------------------------NNLHVVDVAS----DTVYKSCV-MPDKFGP 42 (346)
T ss_dssp CCCCCTTCEEEEEEETT---------------------------------TEEEEEETTT----TEEEEEEE-CSSCCSS
T ss_pred CccCCCCCcEEEEEcCC---------------------------------CEEEEEECCC----CCEEEEEE-cCCCCCc
Confidence 37899999999998875 3789999954 332 2222 4444467
Q ss_pred cceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc--ccccccceEEecCCeEEEEEecCCCCCC
Q 002209 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY--LNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 192 ~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
....|||||++|+.+.. ....|+++|+.+++........... .......++|+|||+.+++........
T Consensus 43 ~~l~~spDG~~l~v~~~--------~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~- 113 (346)
T d1jmxb_ 43 GTAMMAPDNRTAYVLNN--------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL- 113 (346)
T ss_dssp CEEEECTTSSEEEEEET--------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEEC-
T ss_pred ceEEECCCCCEEEEEEC--------CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcce-
Confidence 78999999998876532 2568999999998765432222110 011134788999999998772110000
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEe----CCCCcccccccCCCCc
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI----GPPAVYTSLDPSPDEK 344 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l----~~~~~~~~~~~SpDG~ 344 (953)
.. ........+.+++. +++.... ..+.......+++||+
T Consensus 114 ------------------------------~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T d1jmxb_ 114 ------------------------------ND------HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157 (346)
T ss_dssp ------------------------------SS------CEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred ------------------------------ee------eeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence 00 00002345667776 6543221 1224455667788887
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEE------
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA------ 417 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~------ 417 (953)
.++... ++.+|++..++. +.+... ...+...|+|++..++...
T Consensus 158 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (346)
T d1jmxb_ 158 LYVAGP----------------DIYKMDVKTGKYTVALPLR--------------NWNRKGYSAPDVLYFWPHQSPRHEF 207 (346)
T ss_dssp EEEESS----------------SEEEECTTTCCEEEEECST--------------TCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred EEEeCC----------------cceEEEccCCCEEEEEecC--------------CCccceEEeccccEEEEEecCCCce
Confidence 554322 677888875443 333221 1224456777776543210
Q ss_pred -----E-e-ccCCCcccccccCCeEEEEecCCCCCCCceE--EeecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 418 -----E-T-QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI--LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 418 -----~-~-~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~--l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
. . ...............+.++++ ..+.... +...........+++++..+++.... .+.++|.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~d~ 279 (346)
T d1jmxb_ 208 SMLYTIARFKDDKQDPATADLLYGYLSVDL---KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-----RLAKYDL 279 (346)
T ss_dssp EEEEEEEEC-------CCCEEEEEEEEEET---TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEES-----EEEEEET
T ss_pred EeeeeeeeeccCceeEeeccCCceEEEEEC---CCCceEEEEeecccceeEEEEEeCCCCEEEEecCC-----eEEEEEC
Confidence 0 0 000000011122335677775 3333322 23344455567889999988876432 5778888
Q ss_pred CCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
.++ +........ ..+.. ++|||||++|+....+ ..|.+||..+++...-.
T Consensus 280 ~~~--~~~~~~~~~-~~~~~------va~s~DG~~l~v~~~d---------------------~~v~v~D~~t~~~i~~i 329 (346)
T d1jmxb_ 280 KQR--KLIKAANLD-HTYYC------VAFDKKGDKLYLGGTF---------------------NDLAVFNPDTLEKVKNI 329 (346)
T ss_dssp TTT--EEEEEEECS-SCCCE------EEECSSSSCEEEESBS---------------------SEEEEEETTTTEEEEEE
T ss_pred CCC--cEEEEEcCC-CCEEE------EEEcCCCCEEEEEeCC---------------------CcEEEEECccCCEEEEE
Confidence 775 222222211 11222 8899999999876432 24999999988766443
Q ss_pred c
Q 002209 569 E 569 (953)
Q Consensus 569 ~ 569 (953)
.
T Consensus 330 ~ 330 (346)
T d1jmxb_ 330 K 330 (346)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.50 E-value=2.8e-12 Score=134.64 Aligned_cols=266 Identities=15% Similarity=0.081 Sum_probs=164.4
Q ss_pred ceEEEEccCCCCCCc-eeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 164 GIGIHQLFPDGKLGQ-EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~-~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
.|.|||+.+ ++ .+.+ +.+......+|||||++|+.+.. ....|.++|+.+++..........
T Consensus 13 ~v~v~D~~t----~~~~~~i---~~g~~p~~va~spdG~~l~v~~~--------~~~~i~v~d~~t~~~~~~~~~~~~-- 75 (301)
T d1l0qa2 13 NISVIDVTS----NKVTATI---PVGSNPMGAVISPDGTKVYVANA--------HSNDVSIIDTATNNVIATVPAGSS-- 75 (301)
T ss_dssp EEEEEETTT----TEEEEEE---ECSSSEEEEEECTTSSEEEEEEG--------GGTEEEEEETTTTEEEEEEECSSS--
T ss_pred EEEEEECCC----CeEEEEE---ECCCCceEEEEeCCCCEEEEEEC--------CCCEEEEEECCCCceeeeeecccc--
Confidence 578999854 32 2233 33345677899999999876542 256899999998876554333322
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
...+.|++||+.+++... ....+.+++.
T Consensus 76 ---~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~ 104 (301)
T d1l0qa2 76 ---PQGVAVSPDGKQVYVTNM------------------------------------------------ASSTLSVIDTT 104 (301)
T ss_dssp ---EEEEEECTTSSEEEEEET------------------------------------------------TTTEEEEEETT
T ss_pred ---cccccccccccccccccc------------------------------------------------ccceeeecccc
Confidence 457889999998886611 2234566777
Q ss_pred CCcee-EeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002209 322 DGTVK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 322 ~g~~~-~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
+++.. .+..........|+|||+.+++.... ...+.+++............. .+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~-------------~~ 159 (301)
T d1l0qa2 105 SNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG------------DKTVSVINTVTKAVINTVSVG-------------RS 159 (301)
T ss_dssp TTEEEEEEECSSSEEEEEECTTSSEEEEEETT------------TTEEEEEETTTTEEEEEEECC-------------SS
T ss_pred cceeeeeccccccceEEEeecCCCeeeeeecc------------ccceeeeeccccceeeecccC-------------CC
Confidence 66433 33333556678999999999887632 236788888765543322211 22
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCc
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 480 (953)
+..+.|+||++.++... .....+.+++. ...+.............+.|++||+.++....... .
T Consensus 160 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~-~ 223 (301)
T d1l0qa2 160 PKGIAVTPDGTKVYVAN------------FDSMSISVIDT---VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKY-F 223 (301)
T ss_dssp EEEEEECTTSSEEEEEE------------TTTTEEEEEET---TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSS-C
T ss_pred ceEEEeeccccceeeec------------ccccccccccc---cceeeeecccccCCcceeeccccccccccccccce-e
Confidence 35688999998765541 11234555553 33333333334444567899999999877654332 2
Q ss_pred eEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECC
Q 002209 481 TRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN 560 (953)
Q Consensus 481 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~ 560 (953)
..|+++|+.++ +........ ..... ++|||||++|+..... ...|.+||++
T Consensus 224 ~~v~v~D~~t~--~~~~~~~~~-~~~~~------va~spdg~~l~va~~~--------------------~~~i~v~D~~ 274 (301)
T d1l0qa2 224 NTVSMIDTGTN--KITARIPVG-PDPAG------IAVTPDGKKVYVALSF--------------------CNTVSVIDTA 274 (301)
T ss_dssp CEEEEEETTTT--EEEEEEECC-SSEEE------EEECTTSSEEEEEETT--------------------TTEEEEEETT
T ss_pred eeeeeeecCCC--eEEEEEcCC-CCEEE------EEEeCCCCEEEEEECC--------------------CCeEEEEECC
Confidence 47899998875 222222211 11222 7899999988655421 1259999999
Q ss_pred CCceEEE
Q 002209 561 TGSKERI 567 (953)
Q Consensus 561 ~~~~~~l 567 (953)
+++....
T Consensus 275 t~~~~~~ 281 (301)
T d1l0qa2 275 TNTITAT 281 (301)
T ss_dssp TTEEEEE
T ss_pred CCeEEEE
Confidence 9876543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.50 E-value=8.2e-12 Score=135.94 Aligned_cols=316 Identities=9% Similarity=-0.057 Sum_probs=163.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+...++||||+++++.... ..... ..+|++|..+ | ....+ ++.+
T Consensus 22 p~~~~a~spdg~~~~~~~~~----------------------~~~~~------~~v~v~D~~t-g--~~~~~---~~~~- 66 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLPA----------------------HHSAI------IQQWVLDAGS-G--SILGH---VNGG- 66 (373)
T ss_pred CccccccCCCCCEEEEEccc----------------------ccCCC------ceEEEEECCC-C--CEEEE---EeCC-
Confidence 45677899999999776542 01111 3689999743 2 12222 3222
Q ss_pred cccceEeccCCCeEEEEEeecc-ccCCCCcceEEEEECCCCceeecccCCCcccc---ccccceEEecCCeEEEEEecCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDA-EDSSSSKLRVWVADVDTGKARPLFQSPDIYLN---AIFDNFVWVNNSTLLVCTIPLL 265 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~-~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~---~~~~~~~wspDg~~l~~~~~~~ 265 (953)
....+.|||||++|++...... .........|+++|+.+++.......+..... .....+.|++||+.+++....
T Consensus 67 ~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~- 145 (373)
T d2madh_ 67 FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA- 145 (373)
T ss_pred CCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc-
Confidence 3447899999999999764321 11112345789999999887654433321100 002357899999988765110
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCcccccccCCCCc
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEK 344 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~ 344 (953)
....+..++. +++..... .....+.++|||+
T Consensus 146 ----------------------------------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~g~ 177 (373)
T d2madh_ 146 ----------------------------------------------AGPAVGLVVQGGSSDDQLL--SSPTCYHIHPGAP 177 (373)
T ss_pred ----------------------------------------------CCCceEEeeccCCeEEEEe--ccceeEEEecCCC
Confidence 1122334444 33322221 2345678999999
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
.++++... .+.+.+|+.++.............. ..........+++++..+ +.
T Consensus 178 ~~~v~~~~------------dg~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~-------- 230 (373)
T d2madh_ 178 STFYLLCA------------QGGLAKTDHAGGAAGAGLVGAMLTA------AQNLLTQPAQANKSGRIV-WP-------- 230 (373)
T ss_pred cEEEEEcC------------CCeEEEEEcCCceeeEEEeeecccc------CccceeeeEEECCCceEE-Ee--------
Confidence 88766532 2478889888655443222111000 000011223444444322 11
Q ss_pred cccccccCCeEEEEecC--------CC--CCCCceEEeecccccCCeeeccCCceEEEEEeccc------CceEEEEEcC
Q 002209 425 AKVEVTPRDIIYTQQAE--------PV--QGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT------RRTRTWVISP 488 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~--------~~--~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~------~~~~l~~~d~ 488 (953)
...+.+++++.. +. .................+++++|++.+++....+. ....++++|.
T Consensus 231 -----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 305 (373)
T d2madh_ 231 -----VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred -----cCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEEC
Confidence 111223333320 00 11111111111223345789999998876543221 1236778887
Q ss_pred CCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
.++ +........ ..... +.|||||++++|..... ...|++||+.+++..+..
T Consensus 306 ~t~--~~~~~~~~~-~~~~~------~a~spDG~~~l~vt~~~-------------------d~~v~v~D~~tg~~~~~~ 357 (373)
T d2madh_ 306 LVG--QTSSQISLG-HDVDA------ISVAQDGGPDLYALSAG-------------------TEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCC--cEEEEecCC-CCeeE------EEECCCCCEEEEEEeCC-------------------CCeEEEEECCCCCEEEEE
Confidence 775 222221111 11111 78999999877654221 124999999999876555
Q ss_pred c
Q 002209 569 E 569 (953)
Q Consensus 569 ~ 569 (953)
.
T Consensus 358 ~ 358 (373)
T d2madh_ 358 V 358 (373)
T ss_pred C
Confidence 4
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.49 E-value=2.6e-13 Score=140.43 Aligned_cols=217 Identities=12% Similarity=0.121 Sum_probs=134.1
Q ss_pred ceEEEEEEcC-CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 638 QKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 638 ~~~~~~~~~~-dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
++|++++.+. .|..++..++.|. .|+|+++||.... + ....|.... ...+..+.++++||
T Consensus 3 ~~e~~~v~s~~~~r~~~~~v~~~~---------~pvlylLhG~~g~--~-------~~~~w~~~~-~~~~~~~~~~~iVV 63 (267)
T d1r88a_ 3 PYENLMVPSPSMGRDIPVAFLAGG---------PHAVYLLDAFNAG--P-------DVSNWVTAG-NAMNTLAGKGISVV 63 (267)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCS---------SSEEEEECCSSCC--S-------SSCHHHHTS-CHHHHHTTSSSEEE
T ss_pred ceEEEEEecccCCceeeEEEECCC---------CCEEEEcCCCCCC--C-------Ccchhhhcc-HHHHHHhhCCeEEE
Confidence 4678888765 5667888887542 5999999994210 0 000111111 23455677999999
Q ss_pred EcCCCCCCCCCChh-h--hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 717 GGPTTPIIGEGDEE-A--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 717 ~~~~~~~~G~G~~~-~--~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
+++. +..++.... . ...+.....+++ +.+|.++..+|++|++|+|+||||++|+.++.++|++|+++++++|.
T Consensus 64 ~p~g-~~~~~y~~~~~~~~~~~~tfl~~eL---~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~ 139 (267)
T d1r88a_ 64 APAG-GAYSMYTNWEQDGSKQWDTFLSAEL---PDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGF 139 (267)
T ss_dssp EECC-CTTSTTSBCSSCTTCBHHHHHHTHH---HHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCC
T ss_pred EECC-CCCcCCccccccccccHHHHHHHHH---HHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCc
Confidence 9775 222222221 1 123434444444 55666777789999999999999999999999999999999999998
Q ss_pred CCCCCCCcC------c----ccccchhhh--hHHHHHhcCcccccCCC---CCcEEEEEeCCCCCCCCc---------hH
Q 002209 794 YNRTLTPFG------F----QNEDRTLWE--ATSTYVEMSPFMSANKL---KKPILLVHGEEDNNSGTL---------TM 849 (953)
Q Consensus 794 ~d~~~~~~~------~----~~~~~~~~~--~~~~~~~~sp~~~~~~i---~~P~Li~~G~~D~~v~~~---------~~ 849 (953)
++....... . .......|. ....+.+.+|...++++ ..++++.+|.+|..+... ..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~ 219 (267)
T d1r88a_ 140 LYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMG 219 (267)
T ss_dssp CCTTSHHHHHHHHHHHHHHHCCCTHHHHCCGGGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHH
T ss_pred cCCCCccchhhhhhHHhhhcCCcHhhccCCcchHhHHhcCHHHHHHhccccCceEEEEecCCCcccccchhhhhHHHhhh
Confidence 764321000 0 000000110 11223345565544433 467899999999765300 12
Q ss_pred HHHHHHHHHHhC-CCcEEEEEeCCCCccC
Q 002209 850 QSDRFFNALKGH-GALCRLVILPFESHGY 877 (953)
Q Consensus 850 ~~~~~~~~l~~~-g~~~~~~~~~~~~H~~ 877 (953)
.+.++.++++.. +.++.+...++++|.+
T Consensus 220 ~~~~~~~~l~~~~g~~~~~~~~~~G~H~W 248 (267)
T d1r88a_ 220 NSRMFYNQYRSVGGHNGHFDFPASGDNGW 248 (267)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCSSCCSSH
T ss_pred hHHHHHHHHHHcCCCcEEEEEcCCCeECh
Confidence 456677777765 4678888888889976
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.49 E-value=1.7e-12 Score=144.48 Aligned_cols=169 Identities=11% Similarity=0.060 Sum_probs=103.5
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCC-C
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG-A 189 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~-~ 189 (953)
+..++|||||++|+..+.+ +.+.+||+.+ ++.....++...... .
T Consensus 64 ~~~v~fSpDG~~l~~~s~d---------------------------------g~v~~~d~~t-~~~~~~~~i~~~~~~~~ 109 (432)
T d1qksa2 64 VHISRLSASGRYLFVIGRD---------------------------------GKVNMIDLWM-KEPTTVAEIKIGSEARS 109 (432)
T ss_dssp EEEEEECTTSCEEEEEETT---------------------------------SEEEEEETTS-SSCCEEEEEECCSEEEE
T ss_pred eeEEEECCCCCEEEEEcCC---------------------------------CCEEEEEeeC-CCceEEEEEecCCCCCC
Confidence 4578999999999877654 2678999854 211122233211111 1
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc-------cccccceEEecCCeEEEEEe
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-------NAIFDNFVWVNNSTLLVCTI 262 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~-------~~~~~~~~wspDg~~l~~~~ 262 (953)
.+..+.|||||++|+.+.. ....|.++|.++++............ ......+.+||||+.++++.
T Consensus 110 ~~~s~~~SpDG~~l~vs~~--------~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~ 181 (432)
T d1qksa2 110 IETSKMEGWEDKYAIAGAY--------WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181 (432)
T ss_dssp EEECCSTTCTTTEEEEEEE--------ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred eEEecccCCCCCEEEEEcC--------CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE
Confidence 4566788999999876543 25678999999988765543222110 00011344566666555441
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce---eEeCCCCcccccc
Q 002209 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV---KEIGPPAVYTSLD 338 (953)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~---~~l~~~~~~~~~~ 338 (953)
....++++++. +++. ..+........++
T Consensus 182 ------------------------------------------------~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~ 213 (432)
T d1qksa2 182 ------------------------------------------------KETGKILLVDYTDLNNLKTTEISAERFLHDGG 213 (432)
T ss_dssp ------------------------------------------------TTTTEEEEEETTCSSEEEEEEEECCSSEEEEE
T ss_pred ------------------------------------------------ccCCeEEEEEccCCCcceEEEEcccCccccce
Confidence 02356788887 6543 3333335567889
Q ss_pred cCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEe
Q 002209 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL 381 (953)
Q Consensus 339 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l 381 (953)
|||||+++++.+... ..+.++|.+.+.....
T Consensus 214 ~spdg~~~~va~~~~------------~~v~v~d~~~~~~~~~ 244 (432)
T d1qksa2 214 LDGSHRYFITAANAR------------NKLVVIDTKEGKLVAI 244 (432)
T ss_dssp ECTTSCEEEEEEGGG------------TEEEEEETTTTEEEEE
T ss_pred ECCCCCEEEEecccc------------ceEEEeecccceEEEE
Confidence 999999998887442 3788888887665543
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=99.49 E-value=4e-14 Score=147.53 Aligned_cols=190 Identities=14% Similarity=0.072 Sum_probs=125.9
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEE-cccCCCCCCCCcC-----cc--cccchhhhhHHHHHhcCcccc
Q 002209 754 GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA-RSGAYNRTLTPFG-----FQ--NEDRTLWEATSTYVEMSPFMS 825 (953)
Q Consensus 754 ~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~-~~~~~d~~~~~~~-----~~--~~~~~~~~~~~~~~~~sp~~~ 825 (953)
..+|++||+|+|+|+||+||+.+++.+|+.|++++. +++.--....... .. .....++...+.+...++...
T Consensus 6 y~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~~ca~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 85 (318)
T d2d81a1 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTPTANMKSWSGNQIASV 85 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSCGGGGSTTCCCCCHHHHHHHHHHBTTTBCCG
T ss_pred cCCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCchhhhcccchHHHhhcCCCCCcChhHHHHHHhhcCCcch
Confidence 458999999999999999999999999999975443 3332111111000 00 011112222222222333333
Q ss_pred cCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhC--CCcEEEEEeCCCCccCCCcc-----c-------------HHH
Q 002209 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH--GALCRLVILPFESHGYAARE-----S-------------IMH 885 (953)
Q Consensus 826 ~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~--g~~~~~~~~~~~~H~~~~~~-----~-------------~~~ 885 (953)
....+.|+||+||++|.+|| +.++.+++++++.. +.+++++.+++++|.|.... + ..+
T Consensus 86 ~~~~~~pvll~hG~~D~~Vp--p~~s~~l~~~l~~~~~~~~v~yv~~~gagH~fpT~~~g~g~~~c~~~~~pyi~~C~~d 163 (318)
T d2d81a1 86 ANLGQRKIYMWTGSSDTTVG--PNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTSPYISNCNYD 163 (318)
T ss_dssp GGGGGCEEEEEEETTCCSSC--HHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCTTCEEECSSC
T ss_pred hccCCCCEEEEecCCCCCcC--HHHHHHHHHHHHcCcCCCceEEEEeCCCCCCCCCCCCCcccccccccCChhhhcCCCc
Confidence 34456899999999999999 99999999999876 45799999999999873110 0 023
Q ss_pred HHHHHHHHHHHhccCCCC-CCCc---ccccCcccccCCCCCCCCceEEccCCCCc--ccceeeeeecc
Q 002209 886 VLWETDRWLQKYCVSNTA-DRST---DLKVSKDDESKGAPHLQNKTVAASGGGGT--EADFEHDGCHL 947 (953)
Q Consensus 886 ~~~~i~~fl~~~l~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 947 (953)
....|++||..-+..... .... .++|..... .....++..++++.+|.. ..|..|++||-
T Consensus 164 ~a~~iL~~~yg~~~~~~~~~~~~~~~~f~q~~~~~--~~~~~~~gy~YvP~~~~~~~~~~~l~v~~Hg 229 (318)
T d2d81a1 164 GAGAALKWIYGSLNARNTGTLSGSVLSFAQSGSYG--ANGMDTTGYLYVPQSCASGATVCSLHVALHG 229 (318)
T ss_dssp HHHHHHHHHHSSCCCCCCSSCSSEEEEEECCGGGC--CTTBCSEEEEEECHHHHSSSSCEEEEEEECC
T ss_pred HHHHHHHHHhcccCcccCCCCCCcccccCCccccc--CCCCccceEEEeCcccccCCCCCceEEEEec
Confidence 457889998877754322 2222 266665432 235677889999999854 56999999993
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.49 E-value=2.6e-12 Score=135.26 Aligned_cols=279 Identities=15% Similarity=0.142 Sum_probs=169.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++||..+.+ +.|.|||+.+ + .....+... ..
T Consensus 19 ~I~~l~~sp~~~~l~s~s~D---------------------------------g~i~iWd~~~-~--~~~~~~~~h--~~ 60 (317)
T d1vyhc1 19 PVTRVIFHPVFSVMVSASED---------------------------------ATIKVWDYET-G--DFERTLKGH--TD 60 (317)
T ss_dssp CEEEEEECSSSSEEEEEESS---------------------------------SCEEEEETTT-C--CCCEEECCC--SS
T ss_pred CeEEEEEcCCCCEEEEEeCC---------------------------------CeEEEEECCC-C--CEEEEEeCC--CC
Confidence 57789999999999988765 3679999854 3 223334332 24
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....|+|++..++.... ...+..++....+........... +....|+|++..++...
T Consensus 61 ~V~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------- 120 (317)
T d1vyhc1 61 SVQDISFDHSGKLLASCSA---------DMTIKLWDFQGFECIRTMHGHDHN----VSSVSIMPNGDHIVSAS------- 120 (317)
T ss_dssp CEEEEEECTTSSEEEEEET---------TSCCCEEETTSSCEEECCCCCSSC----EEEEEECSSSSEEEEEE-------
T ss_pred cEEEEeeeccccccccccc---------cccccccccccccccccccccccc----ceeeeccCCCceEEeec-------
Confidence 6889999999999888653 334555665555544333222221 55788999999888651
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDG~~l 346 (953)
....+.++++ +++. ..+... ..+..++|+|||+.|
T Consensus 121 ------------------------------------------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 158 (317)
T d1vyhc1 121 ------------------------------------------RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI 158 (317)
T ss_dssp ------------------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred ------------------------------------------cCcceeEeecccceeeeEEccCCCcceeeecccCCCEE
Confidence 2235566777 6543 333333 667788999999999
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEE-------
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE------- 418 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~------- 418 (953)
+..+.+. .+.+|+...+... .+.... ..+..+.|+|++........
T Consensus 159 ~~~~~d~-------------~v~~~~~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~~~~~~~ 212 (317)
T d1vyhc1 159 ASCSNDQ-------------TVRVWVVATKECKAELREHR-------------HVVECISWAPESSYSSISEATGSETKK 212 (317)
T ss_dssp EEEETTS-------------CEEEEETTTCCEEEEECCCS-------------SCEEEEEECCSCGGGGGGGCCSCC---
T ss_pred EEEeCCC-------------eEEEEeeccceeeEEEecCC-------------CCceEEEEeeccccceeeccccceeee
Confidence 8877443 8899998754433 333221 12234556665543221100
Q ss_pred eccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEe
Q 002209 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (953)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 498 (953)
....+......+..+.+.+++. .++.....+..+...+..+.|+|+|+.|+....++ .|.++|+.++ +....
T Consensus 213 ~~~~~~~~~~~~~d~~i~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~--~~~~~ 284 (317)
T d1vyhc1 213 SGKPGPFLLSGSRDKTIKMWDV--STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK----TLRVWDYKNK--RCMKT 284 (317)
T ss_dssp ----CCEEEEEETTSEEEEEET--TTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT----EEEEECCTTS--CCCEE
T ss_pred eccCCceeEeccCCCEEEEEEC--CCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCC----eEEEEECCCC--cEEEE
Confidence 0000000111133457888885 22222334455566677899999999998876443 5677777764 33333
Q ss_pred ecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.......+.. ++|+|||++|+...
T Consensus 285 ~~~h~~~V~~------~~~s~~~~~l~s~s 308 (317)
T d1vyhc1 285 LNAHEHFVTS------LDFHKTAPYVVTGS 308 (317)
T ss_dssp EECCSSCEEE------EEECSSSSCEEEEE
T ss_pred EcCCCCCEEE------EEEcCCCCEEEEEe
Confidence 3333333433 78999999988765
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=6.8e-14 Score=144.02 Aligned_cols=172 Identities=12% Similarity=0.041 Sum_probs=107.9
Q ss_pred HHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcc
Q 002209 705 VLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (953)
Q Consensus 705 ~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 784 (953)
...| +.||.|+++ +.+|+|.+...... .+.|+. +.+.... .+++.++||||||.+++.++.++|+.+
T Consensus 31 ~~~L-~~~~~vi~~---D~~G~G~S~~~~~~---~~~d~~---~~~~~~~---~~~~~l~GhS~Gg~ia~~~a~~~p~~~ 97 (256)
T d1m33a_ 31 DEEL-SSHFTLHLV---DLPGFGRSRGFGAL---SLADMA---EAVLQQA---PDKAIWLGWSLGGLVASQIALTHPERV 97 (256)
T ss_dssp HHHH-HTTSEEEEE---CCTTSTTCCSCCCC---CHHHHH---HHHHTTS---CSSEEEEEETHHHHHHHHHHHHCGGGE
T ss_pred HHHH-hCCCEEEEE---eCCCCCCccccccc---cccccc---ccccccc---ccceeeeecccchHHHHHHHHhCCccc
Confidence 3344 578999995 45678877443211 122322 2233222 368999999999999999999999999
Q ss_pred cEEEEcccCCCCCCCC-c-Ccccc----------------------------cc--hhhh-------------------h
Q 002209 785 CCGIARSGAYNRTLTP-F-GFQNE----------------------------DR--TLWE-------------------A 813 (953)
Q Consensus 785 ~a~v~~~~~~d~~~~~-~-~~~~~----------------------------~~--~~~~-------------------~ 813 (953)
++++++.+........ + ..... .. .... .
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (256)
T d1m33a_ 98 RALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTETARQDARALKKTVLALPMPEVDVLNGG 177 (256)
T ss_dssp EEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTHHHHHHHHHHHHHTSCCCCHHHHHHH
T ss_pred ceeeeeecccccccchhhhhhHHHHHHHHHhhhhhhhHHHHHHHhhhhhccccchhhHHHHHHHhhhhcchhhHHHHHhh
Confidence 9988876432110000 0 00000 00 0000 0
Q ss_pred HHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 002209 814 TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (953)
Q Consensus 814 ~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~f 893 (953)
...+...+....+.++++|+|+++|++|..+| ++.+.++.+.+. ..++++++++||.. ..++.+.+.+.+.+|
T Consensus 178 ~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p--~~~~~~l~~~~~----~~~~~~i~~~gH~~-~~e~p~~~~~~l~~f 250 (256)
T d1m33a_ 178 LEILKTVDLRQPLQNVSMPFLRLYGYLDGLVP--RKVVPMLDKLWP----HSESYIFAKAAHAP-FISHPAEFCHLLVAL 250 (256)
T ss_dssp HHHHHHCCCTTGGGGCCSCEEEEEETTCSSSC--GGGCC-CTTTCT----TCEEEEETTCCSCH-HHHSHHHHHHHHHHH
T ss_pred hhhhcccchHHHHHhccCCccccccccCCCCC--HHHHHHHHHHCC----CCEEEEECCCCCch-HHHCHHHHHHHHHHH
Confidence 01112233345567889999999999999998 777666654443 35899999999975 356678888888888
Q ss_pred HHH
Q 002209 894 LQK 896 (953)
Q Consensus 894 l~~ 896 (953)
+++
T Consensus 251 l~~ 253 (256)
T d1m33a_ 251 KQR 253 (256)
T ss_dssp HTT
T ss_pred HHH
Confidence 875
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.48 E-value=1e-12 Score=137.75 Aligned_cols=213 Identities=14% Similarity=0.091 Sum_probs=126.0
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
+.++++. +|.+++.... + . -|+||++||.+... ..| ......| +++|.|+++|
T Consensus 9 ~~~~~~~-~~~~l~y~~~---G-----~--gp~vv~lHG~~~~~-----------~~~----~~~~~~l-~~~~~vi~~D 61 (293)
T d1ehya_ 9 KHYEVQL-PDVKIHYVRE---G-----A--GPTLLLLHGWPGFW-----------WEW----SKVIGPL-AEHYDVIVPD 61 (293)
T ss_dssp CEEEEEC-SSCEEEEEEE---E-----C--SSEEEEECCSSCCG-----------GGG----HHHHHHH-HTTSEEEEEC
T ss_pred cceEEEE-CCEEEEEEEE---C-----C--CCeEEEECCCCCCH-----------HHH----HHHHHHH-hcCCEEEEec
Confidence 3445554 6778875543 1 1 47799999964211 011 1223334 5689999955
Q ss_pred CCCCCCCCChhhh------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 720 TTPIIGEGDEEAN------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 720 ~~~~~G~G~~~~~------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
. +|+|.+... .......+.|+.+.++.+ +.+++.|+||||||.+++.++.++|+++.++|++++.
T Consensus 62 ~---~G~G~s~~~~~~~~~~~~~~~~a~~~~~~~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 132 (293)
T d1ehya_ 62 L---RGFGDSEKPDLNDLSKYSLDKAADDQAALLDAL------GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPI 132 (293)
T ss_dssp C---TTSTTSCCCCTTCGGGGCHHHHHHHHHHHHHHT------TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCS
T ss_pred C---CcccCCccccccccccccchhhhhHHHhhhhhc------CccccccccccccccchhcccccCccccceeeeeecc
Confidence 5 577665321 122345555655554432 3468999999999999999999999999999998875
Q ss_pred CCCCC---CCcC------cc---c---------ccc----h----h---h---------hhH-----------------H
Q 002209 794 YNRTL---TPFG------FQ---N---------EDR----T----L---W---------EAT-----------------S 815 (953)
Q Consensus 794 ~d~~~---~~~~------~~---~---------~~~----~----~---~---------~~~-----------------~ 815 (953)
..... .... +. . ... . . | +.. .
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (293)
T d1ehya_ 133 QPDFGPVYFGLGHVHESWYSQFHQLDMAVEVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFN 212 (293)
T ss_dssp CTTC-----------CCHHHHHTTCHHHHHHHTSCHHHHHHHHHHHHHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHH
T ss_pred CccccchhhhhhhhhhhhhhhhhccchhhhhhccchhHHHHHHHHhhhhcccccccccHHHHHhhhhccccchhhhhhhh
Confidence 32100 0000 00 0 000 0 0 0 000 0
Q ss_pred HHHh-cCcc------cccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHH
Q 002209 816 TYVE-MSPF------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLW 888 (953)
Q Consensus 816 ~~~~-~sp~------~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~ 888 (953)
.+.. ..+. .....+++|+|+++|++|..+| .....++.+.+. .++++++++++||.. ..+..+.+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~Pvlii~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~i~~~gH~~-~~e~Pe~~~~ 286 (293)
T d1ehya_ 213 YYRANIRPDAALWTDLDHTMSDLPVTMIWGLGDTCVP--YAPLIEFVPKYY---SNYTMETIEDCGHFL-MVEKPEIAID 286 (293)
T ss_dssp HHHHHSSSSCCCCCTGGGSCBCSCEEEEEECCSSCCT--THHHHHHHHHHB---SSEEEEEETTCCSCH-HHHCHHHHHH
T ss_pred hhhhccccchhhhhhhhhhccCCceEEEEeCCCCCcC--HHHHHHHHHHhC---CCCEEEEECCCCCch-HHHCHHHHHH
Confidence 0000 0000 0123467899999999999988 777766655442 347999999999975 3556667777
Q ss_pred HHHHHH
Q 002209 889 ETDRWL 894 (953)
Q Consensus 889 ~i~~fl 894 (953)
.|.+||
T Consensus 287 ~I~~Ff 292 (293)
T d1ehya_ 287 RIKTAF 292 (293)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 777775
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.47 E-value=3e-12 Score=138.28 Aligned_cols=313 Identities=11% Similarity=0.072 Sum_probs=173.5
Q ss_pred EeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCC
Q 002209 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (953)
Q Consensus 195 ~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 274 (953)
+.||||+++++... ........+|++|+++|+......... ...++|||||+.|+++.....
T Consensus 8 a~spdg~~~~v~~~----~~~~~~~~v~v~D~~tg~~~~~~~~g~------~~~~a~SpDg~~l~v~~~~~~-------- 69 (355)
T d2bbkh_ 8 APAPDARRVYVNDP----AHFAAVTQQFVIDGEAGRVIGMIDGGF------LPNPVVADDGSFIAHASTVFS-------- 69 (355)
T ss_dssp CCCCCTTEEEEEEC----GGGCSSEEEEEEETTTTEEEEEEEECS------SCEEEECTTSSCEEEEEEEEE--------
T ss_pred eeCCCCCEEEEEec----ccCCCcCeEEEEECCCCcEEEEEECCC------CCceEEcCCCCEEEEEeCCCc--------
Confidence 45899999966532 112345689999999998655433232 336899999999987621000
Q ss_pred CCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEe-C--CC------CcccccccCCCCc
Q 002209 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI-G--PP------AVYTSLDPSPDEK 344 (953)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l-~--~~------~~~~~~~~SpDG~ 344 (953)
........+.|+++|+ +++.... . .. .....++|||||+
T Consensus 70 -------------------------------~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 118 (355)
T d2bbkh_ 70 -------------------------------RIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK 118 (355)
T ss_dssp -------------------------------ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred -------------------------------cccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCC
Confidence 0000002356888888 7754332 1 11 2345678999999
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceEEE-eccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~-l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
++++..... ...+.+|+..++.... +.........+ ......+.+++||+.+++..
T Consensus 119 ~~~v~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~dg~~~~v~~------ 175 (355)
T d2bbkh_ 119 TLLFYQFSP-----------APAVGVVDLEGKAFKRMLDVPDCYHIFP------TAPDTFFMHCRDGSLAKVAF------ 175 (355)
T ss_dssp EEEEEECSS-----------SCEEEEEETTTTEEEEEEECCSEEEEEE------EETTEEEEEETTSCEEEEEC------
T ss_pred eeEEecCCC-----------CceeeeeecCCCcEeeEEecCCcceEee------cCCcceEEEcCCCCEEEEEe------
Confidence 998876332 2367788888655433 32211111111 12234578899988655441
Q ss_pred CcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEe--ecC
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL--FDR 501 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~--~~~ 501 (953)
.....+.+.+. .... .........+.+++++..+++....+ ++++++..++. ...+ .+.
T Consensus 176 ------~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~--~~~~~~~~~ 236 (355)
T d2bbkh_ 176 ------GTEGTPEITHT---EVFH----PEDEFLINHPAYSQKAGRLVWPTYTG----KIHQIDLSSGD--AKFLPAVEA 236 (355)
T ss_dssp ------CSSSCCEEEEC---CCCS----CTTSCBCSCCEEETTTTEEEEEBTTS----EEEEEECTTSS--CEECCCEES
T ss_pred ------cCCCeEEEEec---cccc----ceecceeeeccccCCCCeEEEecCCC----eEEEEecCCCc--EEEEeccCC
Confidence 11122333332 1100 01112234567888888888775332 68888887752 2222 111
Q ss_pred CCccc----cCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCccccee
Q 002209 502 SSEDV----YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 577 (953)
Q Consensus 502 ~~~~~----~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~ 577 (953)
..... ....+...+.+++||+.++....... ..........|++||..+++..........
T Consensus 237 ~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~---- 301 (355)
T d2bbkh_ 237 LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD-----------EWRHKTASRFVVVLDAKTGERLAKFEMGHE---- 301 (355)
T ss_dssp SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC-----------TTCTTSCEEEEEEEETTTCCEEEEEEEEEE----
T ss_pred cccceEeeeeeccceEEEEEeCCCCeEEEEeccCC-----------ceeecCCCCeEEEEeCCCCcEEEEecCCCC----
Confidence 11000 00011222778999988877654321 111111234699999998877654432211
Q ss_pred eeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeE
Q 002209 578 TTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (953)
Q Consensus 578 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~ 623 (953)
. ...+|||||+.+++...... ..|+++|..+|+...
T Consensus 302 -~-------~~~a~spDG~~~l~v~~~~d--~~i~v~D~~tg~~~~ 337 (355)
T d2bbkh_ 302 -I-------DSINVSQDEKPLLYALSTGD--KTLYIHDAESGEELR 337 (355)
T ss_dssp -E-------CEEEECCSSSCEEEEEETTT--TEEEEEETTTCCEEE
T ss_pred -E-------EEEEEcCCCCeEEEEEECCC--CEEEEEECCCCCEEE
Confidence 1 12478999997776665433 579999999997543
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.46 E-value=6.8e-13 Score=140.00 Aligned_cols=216 Identities=15% Similarity=0.054 Sum_probs=131.7
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
+.-.++..||.+|+...+-+++ .|.||++||++.... .|. ....++++||.|++
T Consensus 12 ~~~~v~~~dG~~i~y~~~G~~~--------g~pvvllHG~~~~~~-----------~w~-----~~~~~l~~~~~vi~-- 65 (313)
T d1wm1a_ 12 DSGWLDTGDGHRIYWELSGNPN--------GKPAVFIHGGPGGGI-----------SPH-----HRQLFDPERYKVLL-- 65 (313)
T ss_dssp EEEEEECSSSCEEEEEEEECTT--------SEEEEEECCTTTCCC-----------CGG-----GGGGSCTTTEEEEE--
T ss_pred cCCEEEeCCCcEEEEEEecCCC--------CCeEEEECCCCCccc-----------chH-----HHHHHhhcCCEEEE--
Confidence 3444667799999888775432 356788999753221 121 11233567999999
Q ss_pred CCCCCCCCChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 720 TTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 720 ~~~~~G~G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
.|.+|+|.|.... .......+|+...++.+ +..++.++|||+||.++..++...|++++..+..++...
T Consensus 66 -~D~rG~G~S~~~~~~~~~~~~~~~~d~~~~~~~~------~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~~~ 138 (313)
T d1wm1a_ 66 -FDQRGCGRSRPHASLDNNTTWHLVADIERLREMA------GVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTL 138 (313)
T ss_dssp -ECCTTSTTCBSTTCCTTCSHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCC
T ss_pred -EeCCCcccccccccccccchhhHHHHHHhhhhcc------CCCcceeEeeecCCchhhHHHHHHhhhheeeeecccccc
Confidence 4556778774422 12334444544443332 346899999999999999999999999999988775432
Q ss_pred CCC---------C------------CcCccc-cc--------------chhhhh--------------------------
Q 002209 796 RTL---------T------------PFGFQN-ED--------------RTLWEA-------------------------- 813 (953)
Q Consensus 796 ~~~---------~------------~~~~~~-~~--------------~~~~~~-------------------------- 813 (953)
... . ...... .. ...+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (313)
T d1wm1a_ 139 RKQRLHWYYQDGASRFFPEKWERVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGE 218 (313)
T ss_dssp CHHHHHHHHTSSGGGTSHHHHHHHHTTSCTTGGGCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTTSSSSCCGGGGGGGC
T ss_pred cccccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhh
Confidence 100 0 000000 00 000000
Q ss_pred ---H-------HHHHhcC---------cccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 002209 814 ---T-------STYVEMS---------PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874 (953)
Q Consensus 814 ---~-------~~~~~~s---------p~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 874 (953)
. ....... .......+++|+|+++|++|..+| +..++++.+.+.. .++++++++|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~G~~D~~~p--~~~~~~l~~~~p~----a~~~~i~~aG 292 (313)
T d1wm1a_ 219 DDFALAFARIENHYFTHLGFLESDDQLLRNVPLIRHIPAVIVHGRYDMACQ--VQNAWDLAKAWPE----AELHIVEGAG 292 (313)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCSSTTHHHHTGGGGTTSCEEEEEETTCSSSC--HHHHHHHHHHCTT----SEEEEETTCC
T ss_pred hhHHhhhhhhhhhhhhhhcccccchhhhhhhhhhCCCCEEEEEECCCCccC--HHHHHHHHHHCCC----CEEEEECCCC
Confidence 0 0000000 011223467899999999999998 8988888887754 4899999999
Q ss_pred ccCCCcccHHHHHHHHHHHHHHhc
Q 002209 875 HGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 875 H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
|.... .+...+++++++++.
T Consensus 293 H~~~e----P~~~~~lv~a~~~f~ 312 (313)
T d1wm1a_ 293 HSYDE----PGILHQLMIATDRFA 312 (313)
T ss_dssp SSTTS----HHHHHHHHHHHHHHT
T ss_pred CCcCC----chHHHHHHHHHHHhc
Confidence 96532 345566777777753
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.46 E-value=2.1e-11 Score=135.51 Aligned_cols=83 Identities=11% Similarity=0.002 Sum_probs=52.2
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCC-Cccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP-DIYL 242 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~-~~~~ 242 (953)
.|.|||+.+ + ..... ++.+..+..++|||||++|+.... ...|.++|+++++...+.... ....
T Consensus 43 ~v~vwD~~t-~--~~~~~---l~~g~~~~~vafSPDGk~l~~~~~---------d~~v~vwd~~t~~~~~~~~i~~~~~~ 107 (426)
T d1hzua2 43 QIALVDGDS-K--KIVKV---IDTGYAVHISRMSASGRYLLVIGR---------DARIDMIDLWAKEPTKVAEIKIGIEA 107 (426)
T ss_dssp EEEEEETTT-C--SEEEE---EECCSSEEEEEECTTSCEEEEEET---------TSEEEEEETTSSSCEEEEEEECCSEE
T ss_pred EEEEEECCC-C--cEEEE---EeCCCCeeEEEECCCCCEEEEEeC---------CCCEEEEEccCCceeEEEEEeCCCCC
Confidence 679999854 2 12233 334456788999999999876431 347889999888743322111 1011
Q ss_pred cccccceEEecCCeEEEEE
Q 002209 243 NAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~ 261 (953)
...+.+++|||||++|+++
T Consensus 108 ~~~~~s~~~spDG~~l~v~ 126 (426)
T d1hzua2 108 RSVESSKFKGYEDRYTIAG 126 (426)
T ss_dssp EEEEECCSTTCTTTEEEEE
T ss_pred cceEEeeeecCCCCEEEEe
Confidence 1124477889999998866
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.46 E-value=4.7e-12 Score=133.17 Aligned_cols=239 Identities=12% Similarity=0.108 Sum_probs=145.1
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+...+|||||++|+... .+..|.++|+++++..+...... ...+..++|+|||+.++..
T Consensus 13 ~~V~~l~~s~dg~~l~s~s---------~Dg~v~vWd~~~~~~~~~~~~~h---~~~v~~v~~~~~g~~~~~~------- 73 (299)
T d1nr0a2 13 KAITALSSSADGKTLFSAD---------AEGHINSWDISTGISNRVFPDVH---ATMITGIKTTSKGDLFTVS------- 73 (299)
T ss_dssp SCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTCCEEECSSCSC---SSCEEEEEECTTSCEEEEE-------
T ss_pred CCcEEEEECCCCCEEEEEc---------CCCeEEEEECCCCcEEEEEcCCC---CCcEEEEEeeccceeeccc-------
Confidence 4689999999999988744 24578888999888665543211 1227789999999876654
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce---eEeC--CCCcccccccCCC
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV---KEIG--PPAVYTSLDPSPD 342 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~---~~l~--~~~~~~~~~~SpD 342 (953)
....+.+++. .... ..+. ....+..++|+||
T Consensus 74 -------------------------------------------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 110 (299)
T d1nr0a2 74 -------------------------------------------WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 110 (299)
T ss_dssp -------------------------------------------TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTT
T ss_pred -------------------------------------------ceeeEEEeccCCccccccccccccccccccccccccc
Confidence 1123444554 2111 1111 1144567889999
Q ss_pred CcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 343 G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
|+.++.... +.+.+|+... ...+... .....++|+||++.++..
T Consensus 111 g~~~~~~~~--------------~~i~~~~~~~--~~~~~~~--------------~~~~~~~~s~~~~~l~~g------ 154 (299)
T d1nr0a2 111 GDIAVAACY--------------KHIAIYSHGK--LTEVPIS--------------YNSSCVALSNDKQFVAVG------ 154 (299)
T ss_dssp SSCEEEEES--------------SEEEEEETTE--EEEEECS--------------SCEEEEEECTTSCEEEEE------
T ss_pred ccccccccc--------------cccccccccc--ccccccc--------------cccccccccccccccccc------
Confidence 998876652 2677887542 1211110 112458899999877665
Q ss_pred CCcccccccCCeEEEEecCCCCCCCceEE--eecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEe--
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL-- 498 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~~~l--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~-- 498 (953)
+..+.+.++|+ .+++...+ ..+...+..++|+|+++.|+.....+ .+++++..++. .....
T Consensus 155 -------~~dg~i~~~d~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~~~~~~~~~-~~~~~~~ 219 (299)
T d1nr0a2 155 -------GQDSKVHVYKL---SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR----KVIPYSVANNF-ELAHTNS 219 (299)
T ss_dssp -------ETTSEEEEEEE---ETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS----CEEEEEGGGTT-EESCCCC
T ss_pred -------ccccccccccc---cccccccccccccccccccccccccccccccccccc----ccccccccccc-ccccccc
Confidence 44567888886 44443332 34456677899999999988765443 45556655431 11000
Q ss_pred ecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEE
Q 002209 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (953)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l 567 (953)
.......+.. +.|+|+|++|+....+ ..+++||+.++....+
T Consensus 220 ~~~h~~~v~~------l~~s~~~~~l~sgs~d---------------------g~i~iwd~~~~~~~~~ 261 (299)
T d1nr0a2 220 WTFHTAKVAC------VSWSPDNVRLATGSLD---------------------NSVIVWNMNKPSDHPI 261 (299)
T ss_dssp CCCCSSCEEE------EEECTTSSEEEEEETT---------------------SCEEEEETTCTTSCCE
T ss_pred cccccccccc------ccccccccceEEEcCC---------------------CEEEEEECCCCCcceE
Confidence 1111122222 6899999999877632 1399999987765443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=1.1e-11 Score=132.24 Aligned_cols=287 Identities=12% Similarity=0.045 Sum_probs=147.8
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
.|.||++..++. .+.+..+..+..+..++|||||++|+.... .++...+|.++..++..+........
T Consensus 15 ~I~v~~~~~~~~---l~~~~~~~~~~~v~~la~spDG~~L~v~~~------~d~~i~~~~i~~~~~~~~~~~~~~~~--- 82 (333)
T d1ri6a_ 15 QIHVWNLNHEGA---LTLTQVVDVPGQVQPMVVSPDKRYLYVGVR------PEFRVLAYRIAPDDGALTFAAESALP--- 82 (333)
T ss_dssp EEEEEEECTTSC---EEEEEEEECSSCCCCEEECTTSSEEEEEET------TTTEEEEEEECTTTCCEEEEEEEECS---
T ss_pred cEEEEEEcCCCC---eEEEEEEcCCCCEeEEEEeCCCCEEEEEEC------CCCeEEEEEEeCCCCcEEEeeecccC---
Confidence 689999964332 222322333456889999999999976542 22344455555444443332221111
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~ 322 (953)
.....++|+|||++|++... ....+..++. .
T Consensus 83 ~~p~~l~~spDg~~l~v~~~------------------------------------------------~~~~v~~~~~~~ 114 (333)
T d1ri6a_ 83 GSLTHISTDHQGQFVFVGSY------------------------------------------------NAGNVSVTRLED 114 (333)
T ss_dssp SCCSEEEECTTSSEEEEEET------------------------------------------------TTTEEEEEEEET
T ss_pred CCceEEEEcCCCCEEeeccc------------------------------------------------CCCceeeecccc
Confidence 01446899999999987611 1123334444 2
Q ss_pred Cc---eeEeC-CCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccc
Q 002209 323 GT---VKEIG-PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVR 398 (953)
Q Consensus 323 g~---~~~l~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~ 398 (953)
+. ..... .......+.+||||++++...... ..+.+|+................. ...
T Consensus 115 ~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~------------~~i~~~~~~~~~~~~~~~~~~~~~------~~g 176 (333)
T d1ri6a_ 115 GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ------------DRICLFTVSDDGHLVAQDPAEVTT------VEG 176 (333)
T ss_dssp TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG------------TEEEEEEECTTSCEEEEEEEEEEC------STT
T ss_pred ccceecccccCCCccceEEEeeecceeeecccccc------------ceeeEEEeccCCcceeeeceeeee------ecC
Confidence 22 11222 225667889999999988776432 267777775322111110000000 011
Q ss_pred cCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE---Eeec------ccccCCeeeccCCce
Q 002209 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI---LHKL------DLRYGGISWCDDSLA 469 (953)
Q Consensus 399 ~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~---l~~~------~~~~~~~~~SpDg~~ 469 (953)
..++.++|+++++.++.. .. ..+...+++. ......... +... ......+.+++||++
T Consensus 177 ~~p~~i~~~~~~~~~~~~-~~-----------~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 243 (333)
T d1ri6a_ 177 AGPRHMVFHPNEQYAYCV-NE-----------LNSSVDVWEL-KDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 243 (333)
T ss_dssp CCEEEEEECTTSSEEEEE-ET-----------TTTEEEEEES-SCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred CCccEEEEeccceeEEee-cc-----------ccCceEEEee-cccccceeeeeeeeeeecCCCccccceeEEEecccCc
Confidence 234578999999855433 11 1122333332 011111111 1111 111234689999998
Q ss_pred EEEEEecccCceEEEEEcCCCCCCCcEEee-cCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCC
Q 002209 470 LVYESWYKTRRTRTWVISPGSKDVAPRILF-DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPE 548 (953)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~ 548 (953)
++...... ....+|.++.++. ...... ........+ ++|||||++|+....+.
T Consensus 244 ~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~------~a~spDGk~l~va~~~~----------------- 297 (333)
T d1ri6a_ 244 LYACDRTA-SLITVFSVSEDGS--VLSKEGFQPTETQPRG------FNVDHSGKYLIAAGQKS----------------- 297 (333)
T ss_dssp EEEEETTT-TEEEEEEECTTSC--CEEEEEEEECSSSCCC------EEECTTSSEEEEECTTT-----------------
T ss_pred eeeecccC-CeEEEEEEcCCCC--EEEEEEEeCCCCCeeE------EEEeCCCCEEEEEECCC-----------------
Confidence 87765433 3346777776653 212211 111111111 88999999987653211
Q ss_pred CCCCeEEEEECCCCceEEEe
Q 002209 549 GNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 549 ~~~~~L~~~d~~~~~~~~l~ 568 (953)
+.-.+|.+|.++|+++++.
T Consensus 298 -~~v~v~~id~~tG~l~~~~ 316 (333)
T d1ri6a_ 298 -HHISVYEIVGEQGLLHEKG 316 (333)
T ss_dssp -CEEEEEEEETTTTEEEEEE
T ss_pred -CeEEEEEEECCCCcEEEEE
Confidence 1223666788888877653
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.45 E-value=8.2e-11 Score=127.82 Aligned_cols=313 Identities=11% Similarity=0.003 Sum_probs=170.2
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.....++||||++|++... ........||++|.++++...-...+. ...++|||||+.|++.........
T Consensus 22 p~~~~a~spdg~~~~~~~~----~~~~~~~~v~v~D~~tg~~~~~~~~~~------~~~~a~SpDG~~l~va~~~~~~~~ 91 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLP----AHHSAIIQQWVLDAGSGSILGHVNGGF------LPNPVAAHSGSEFALASTSFSRIA 91 (373)
T ss_pred CccccccCCCCCEEEEEcc----cccCCCceEEEEECCCCCEEEEEeCCC------CccEEEcCCCCEEEEEeecCCccc
Confidence 4677889999999987542 223456789999999988654333222 236899999999998722111100
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeC-CC--------Cccccccc
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG-PP--------AVYTSLDP 339 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~-~~--------~~~~~~~~ 339 (953)
... ....+.++|+ +++..... .+ .....+.|
T Consensus 92 ------------------------------~~~---------~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (373)
T d2madh_ 92 ------------------------------KGK---------RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN 132 (373)
T ss_pred ------------------------------ccc---------cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEE
Confidence 000 2245777888 77554322 11 12345789
Q ss_pred CCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002209 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (953)
Q Consensus 340 SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~ 419 (953)
||||+.+++..... ...+.+++........... .+..+.++|||+.+++..
T Consensus 133 s~dg~~~~v~~~~~-----------~~~~~~~~~~~~~~~~~~~----------------~~~~~~~s~~g~~~~v~~-- 183 (373)
T d2madh_ 133 TPNNADLLFFQFAA-----------GPAVGLVVQGGSSDDQLLS----------------SPTCYHIHPGAPSTFYLL-- 183 (373)
T ss_pred EeCCCcEEEEEEcC-----------CCceEEeeccCCeEEEEec----------------cceeEEEecCCCcEEEEE--
Confidence 99999988776332 1256667766544332221 123578999998765441
Q ss_pred ccCCCcccccccCCeEEEEecCCCCCCCceEE-eec------ccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCC
Q 002209 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKL------DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKD 492 (953)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l-~~~------~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~ 492 (953)
...+.+.+++. .+++.... ... ........+++++..++.. .. ..++.++..++.
T Consensus 184 ----------~~dg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~v~~~~~~~~~ 245 (373)
T d2madh_ 184 ----------CAQGGLAKTDH---AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YS----GKILQADISAAG 245 (373)
T ss_pred ----------cCCCeEEEEEc---CCceeeEEEeeeccccCccceeeeEEECCCceEEEec-CC----ceEEEEEcCCCe
Confidence 23446777774 33332221 111 1111234556666554433 11 145555554431
Q ss_pred CCcEEeecCCCccc---cCCC-CCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 493 VAPRILFDRSSEDV---YSDP-GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 493 ~~~~~~~~~~~~~~---~~~~-~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
.......+...... ...+ ....+.+++||+.+++.... +..+.... ....+.+||..+++.....
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~~-------~~~~v~~~d~~t~~~~~~~ 314 (373)
T d2madh_ 246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE----QSAWKLHA-------AAKEVTSVTGLVGQTSSQI 314 (373)
T ss_pred EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCC----CceEEeec-------CCCeEEEEECCCCcEEEEe
Confidence 10000011000000 0000 11116789999888766421 22222111 1235899999988866554
Q ss_pred ccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeE
Q 002209 569 ESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~ 623 (953)
..... . ....|||||+.++|...... ..++++|..+|+...
T Consensus 315 ~~~~~-----~-------~~~a~spDG~~~l~vt~~~d--~~v~v~D~~tg~~~~ 355 (373)
T d2madh_ 315 SLGHD-----V-------DAISVAQDGGPDLYALSAGT--EVLHIYDAGAGDQDQ 355 (373)
T ss_pred cCCCC-----e-------eEEEECCCCCEEEEEEeCCC--CeEEEEECCCCCEEE
Confidence 43322 1 12478999998776555433 469999999987643
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.44 E-value=4.7e-12 Score=136.71 Aligned_cols=291 Identities=11% Similarity=0.001 Sum_probs=144.2
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeecc-ccCCCCcceEEEEECCCCceeecccCCCc-
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDA-EDSSSSKLRVWVADVDTGKARPLFQSPDI- 240 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~-~~~~~~~~~l~~~d~~~g~~~~lt~~~~~- 240 (953)
+.+|+||..+ ++. +..++.+ ....++|||||++|++...... ...+.....|+++|+.+++.......+..
T Consensus 28 ~~v~v~D~~t----g~~--~~~~~~g-~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~ 100 (355)
T d2bbkh_ 28 TQQFVIDGEA----GRV--IGMIDGG-FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 100 (355)
T ss_dssp EEEEEEETTT----TEE--EEEEEEC-SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CeEEEEECCC----CcE--EEEEECC-CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcc
Confidence 4789999843 322 1112222 3457899999999998664321 01112245799999999886543322211
Q ss_pred --cccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhh-h-hcCCcchhhhhhhhccceE
Q 002209 241 --YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQ-D-LLKDEYDEDLFDYYATTQL 316 (953)
Q Consensus 241 --~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~d~~~~~~~~~~~l 316 (953)
........++|+|||+.+++......... .++..........-... . ..........+.+...+..
T Consensus 101 ~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~ 170 (355)
T d2bbkh_ 101 RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV----------GVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSL 170 (355)
T ss_dssp CCCBSCCGGGEEECTTSSEEEEEECSSSCEE----------EEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCE
T ss_pred eeecCCCCceEEEecCCCeeEEecCCCCcee----------eeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCE
Confidence 00111346789999999887632211110 01111100000000000 0 0000000000011111222
Q ss_pred EEEEc--CCceeEeCCC-------CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCc
Q 002209 317 VLVSL--DGTVKEIGPP-------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLA 387 (953)
Q Consensus 317 ~~~~~--~g~~~~l~~~-------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~ 387 (953)
..+.. .+....+... ..+....+++++..+++...+ +.+++|++.++....+......
T Consensus 171 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~ 237 (355)
T d2bbkh_ 171 AKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYT-------------GKIHQIDLSSGDAKFLPAVEAL 237 (355)
T ss_dssp EEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTT-------------SEEEEEECTTSSCEECCCEESS
T ss_pred EEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCC-------------CeEEEEecCCCcEEEEeccCCc
Confidence 22222 2322222110 223456778888888877633 3889999987765544332211
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCC
Q 002209 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDS 467 (953)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg 467 (953)
............+...+++++||+.++...... ... ......+.++++|. ..++.............++|||||
T Consensus 238 ~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~--~~~-~~~~~~~~v~v~d~---~t~~~~~~~~~~~~~~~~a~spDG 311 (355)
T d2bbkh_ 238 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQR--DEW-RHKTASRFVVVLDA---KTGERLAKFEMGHEIDSINVSQDE 311 (355)
T ss_dssp CHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC--CTT-CTTSCEEEEEEEET---TTCCEEEEEEEEEEECEEEECCSS
T ss_pred ccceEeeeeeccceEEEEEeCCCCeEEEEeccC--Cce-eecCCCCeEEEEeC---CCCcEEEEecCCCCEEEEEEcCCC
Confidence 100000111123445689999998766553221 111 11133457899995 434433222233446789999999
Q ss_pred ceEEEEEecccCceEEEEEcCCCC
Q 002209 468 LALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
+.++|....... .|+++|+.++
T Consensus 312 ~~~l~v~~~~d~--~i~v~D~~tg 333 (355)
T d2bbkh_ 312 KPLLYALSTGDK--TLYIHDAESG 333 (355)
T ss_dssp SCEEEEEETTTT--EEEEEETTTC
T ss_pred CeEEEEEECCCC--EEEEEECCCC
Confidence 987776654433 7999999886
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.44 E-value=4.3e-11 Score=125.36 Aligned_cols=267 Identities=10% Similarity=0.015 Sum_probs=165.8
Q ss_pred cceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhh
Q 002209 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (953)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (953)
...|.++|+++++..+....+.. ...++|+|||++|+++.
T Consensus 11 ~~~v~v~D~~t~~~~~~i~~g~~-----p~~va~spdG~~l~v~~----------------------------------- 50 (301)
T d1l0qa2 11 SDNISVIDVTSNKVTATIPVGSN-----PMGAVISPDGTKVYVAN----------------------------------- 50 (301)
T ss_dssp TTEEEEEETTTTEEEEEEECSSS-----EEEEEECTTSSEEEEEE-----------------------------------
T ss_pred CCEEEEEECCCCeEEEEEECCCC-----ceEEEEeCCCCEEEEEE-----------------------------------
Confidence 55799999999986654443332 45789999999998661
Q ss_pred hcCCcchhhhhhhhccceEEEEEc-CCcee-EeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC
Q 002209 298 LLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (953)
Q Consensus 298 ~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g 375 (953)
. ....|.++|+ +++.. .+........+.|++||+++++.... ...+.+|+..+
T Consensus 51 ----~---------~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 105 (301)
T d1l0qa2 51 ----A---------HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMA------------SSTLSVIDTTS 105 (301)
T ss_dssp ----G---------GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT------------TTEEEEEETTT
T ss_pred ----C---------CCCEEEEEECCCCceeeeeeccccccccccccccccccccccc------------cceeeeccccc
Confidence 0 2356889999 77543 34333556788999999999887633 23788888886
Q ss_pred ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc
Q 002209 376 IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD 455 (953)
Q Consensus 376 ~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~ 455 (953)
++........ .....+.|+|||+.+++.. .....+.+++. ............
T Consensus 106 ~~~~~~~~~~-------------~~~~~~~~~~dg~~~~~~~------------~~~~~~~~~~~---~~~~~~~~~~~~ 157 (301)
T d1l0qa2 106 NTVAGTVKTG-------------KSPLGLALSPDGKKLYVTN------------NGDKTVSVINT---VTKAVINTVSVG 157 (301)
T ss_dssp TEEEEEEECS-------------SSEEEEEECTTSSEEEEEE------------TTTTEEEEEET---TTTEEEEEEECC
T ss_pred ceeeeecccc-------------ccceEEEeecCCCeeeeee------------ccccceeeeec---cccceeeecccC
Confidence 6544332211 1234688999999776651 22345667774 333333333334
Q ss_pred cccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCC
Q 002209 456 LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEG 535 (953)
Q Consensus 456 ~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~ 535 (953)
.....+.|+||++.++...... . .++..+.... ........... ..+ +.++++|+.++....+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~--~~~~~~~~~~~-~~~------~~~~~~g~~~~v~~~~~---- 221 (301)
T d1l0qa2 158 RSPKGIAVTPDGTKVYVANFDS-M--SISVIDTVTN--SVIDTVKVEAA-PSG------IAVNPEGTKAYVTNVDK---- 221 (301)
T ss_dssp SSEEEEEECTTSSEEEEEETTT-T--EEEEEETTTT--EEEEEEECSSE-EEE------EEECTTSSEEEEEEECS----
T ss_pred CCceEEEeeccccceeeecccc-c--ccccccccce--eeeecccccCC-cce------eeccccccccccccccc----
Confidence 4456689999999988775443 2 3444444442 22222211111 111 67999999887665321
Q ss_pred cEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEE
Q 002209 536 TYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQS 615 (953)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~ 615 (953)
....|++||+.+++.......... +. ..+|||||+++++..+.. ..|.++|
T Consensus 222 --------------~~~~v~v~D~~t~~~~~~~~~~~~-----~~-------~va~spdg~~l~va~~~~---~~i~v~D 272 (301)
T d1l0qa2 222 --------------YFNTVSMIDTGTNKITARIPVGPD-----PA-------GIAVTPDGKKVYVALSFC---NTVSVID 272 (301)
T ss_dssp --------------SCCEEEEEETTTTEEEEEEECCSS-----EE-------EEEECTTSSEEEEEETTT---TEEEEEE
T ss_pred --------------eeeeeeeeecCCCeEEEEEcCCCC-----EE-------EEEEeCCCCEEEEEECCC---CeEEEEE
Confidence 123599999998877654433221 11 247899999887665433 3689999
Q ss_pred CCCCCee
Q 002209 616 WPDKKSC 622 (953)
Q Consensus 616 ~~~g~~~ 622 (953)
+.+++..
T Consensus 273 ~~t~~~~ 279 (301)
T d1l0qa2 273 TATNTIT 279 (301)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 9888654
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.44 E-value=9.2e-13 Score=137.32 Aligned_cols=237 Identities=12% Similarity=0.088 Sum_probs=139.8
Q ss_pred CCceEEEEEEcC-CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcE
Q 002209 636 SLQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (953)
Q Consensus 636 ~~~~~~~~~~~~-dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (953)
.++++.+++.+. -|..|+..+. + +++|+|+++||.+.... ...|... ....+.+++.|++
T Consensus 3 ~~~v~~~~~~s~~~~r~i~~~~~-~--------~~~p~lyllhG~~g~~d---------~~~W~~~-~~~~~~~~~~~~i 63 (280)
T d1dqza_ 3 GLPVEYLQVPSASMGRDIKVQFQ-G--------GGPHAVYLLDGLRAQDD---------YNGWDIN-TPAFEEYYQSGLS 63 (280)
T ss_dssp SSCEEEEEEEETTTTEEEEEEEE-C--------CSSSEEEECCCTTCCSS---------SCHHHHH-SCHHHHHTTSSSE
T ss_pred CcEEEEEEEecccCCCcceEEee-C--------CCCCEEEECCCCCCCCc---------cchhhhc-chHHHHHHhCCcE
Confidence 356788888654 4667776663 1 13899999999421100 0011111 1234567789999
Q ss_pred EEEcCCCCCCCCCChh----------hhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcc
Q 002209 715 ILGGPTTPIIGEGDEE----------ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (953)
Q Consensus 715 V~~~~~~~~~G~G~~~----------~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 784 (953)
||+++. +..++.... ....+....++++ +.+|.++..+|+++++|+|+||||++|+.+++++|++|
T Consensus 64 vV~P~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el---~~~i~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F 139 (280)
T d1dqza_ 64 VIMPVG-GQSSFYTDWYQPSQSNGQNYTYKWETFLTREM---PAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQF 139 (280)
T ss_dssp EEEECC-CTTCTTSBCSSSCTTTTCCSCCBHHHHHHTHH---HHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTC
T ss_pred EEEECC-CCCCcCccccCCcccccCCcchhHHHHHHHHH---HHHHHHhcCCCCCceEEEEechHHHHHHHHHHhCcCce
Confidence 999875 222211110 1123334444444 45555666689999999999999999999999999999
Q ss_pred cEEEEcccCCCCCCCCcCcc----------cccchhh--hhHHHHHhcCcccccCCC---CCcEEEEEeCCCCCCCC---
Q 002209 785 CCGIARSGAYNRTLTPFGFQ----------NEDRTLW--EATSTYVEMSPFMSANKL---KKPILLVHGEEDNNSGT--- 846 (953)
Q Consensus 785 ~a~v~~~~~~d~~~~~~~~~----------~~~~~~~--~~~~~~~~~sp~~~~~~i---~~P~Li~~G~~D~~v~~--- 846 (953)
+++++++|.++......... .....++ .....+...+|...+.++ ..++++.+|..|.....
T Consensus 140 ~av~s~SG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 219 (280)
T d1dqza_ 140 PYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDN 219 (280)
T ss_dssp SEEEEESCCCCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCS
T ss_pred eEEEEecCccCcccCcchhhhhhhHhhccCCCHhhccCCcchhhhhhcCHHHHHHHhhhcCCeEEEEeCCCCCccccccc
Confidence 99999999876432211000 0000111 012234556777666554 46899999998865420
Q ss_pred ---------chHHHHHHHHHHHhCCCcEEEEEe-CCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 847 ---------LTMQSDRFFNALKGHGALCRLVIL-PFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 847 ---------~~~~~~~~~~~l~~~g~~~~~~~~-~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
....++++.+.++.++.......+ ++++|.+. .+...+..++-.+.+.|
T Consensus 220 ~~~~~~e~~~~~~~~~~~~~l~~~g~~~~~~~~~~~GgH~W~---~W~~~L~~~~p~~~~~l 278 (280)
T d1dqza_ 220 IPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSWP---YWNEQLVAMKADIQHVL 278 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHcCCCeEEEEEcCCCccCch---HHHHHHHHHhHHHHHHh
Confidence 023467788888888765444444 56689763 23334443344444433
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.41 E-value=4.3e-12 Score=138.39 Aligned_cols=232 Identities=13% Similarity=0.102 Sum_probs=136.3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+...+|||||+.||+.. .+..|.+++.++++...+....+ +...+..++|+|||++|+...
T Consensus 9 pIt~~~~s~dg~~la~~~---------~~~~i~iw~~~~~~~~~~~~l~g--H~~~V~~l~fsp~~~~l~s~s------- 70 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICP---------NNHEVHIYEKSGNKWVQVHELKE--HNGQVTGVDWAPDSNRIVTCG------- 70 (371)
T ss_dssp CCCEEEECTTSSEEEEEC---------SSSEEEEEEEETTEEEEEEEEEC--CSSCEEEEEEETTTTEEEEEE-------
T ss_pred CeEEEEECCCCCEEEEEe---------CCCEEEEEECCCCCEEEEEEecC--CCCCEEEEEECCCCCEEEEEE-------
Confidence 478899999999999854 24567888887776443322111 112278999999999988651
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee---EeCCC-CcccccccCCCCc
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK---EIGPP-AVYTSLDPSPDEK 344 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~---~l~~~-~~~~~~~~SpDG~ 344 (953)
..+.|.++++ ++... .+... ..+..+.|+|||+
T Consensus 71 ------------------------------------------~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~ 108 (371)
T d1k8kc_ 71 ------------------------------------------TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK 108 (371)
T ss_dssp ------------------------------------------TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS
T ss_pred ------------------------------------------CCCeEEEEeecccccccccccccccccccccccccccc
Confidence 1134556666 54322 22233 6688899999999
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
+|+..+.+. .+.+|+.+............ ......+..++|+|||+.++..
T Consensus 109 ~l~~~s~d~-------------~i~i~~~~~~~~~~~~~~~~--------~~~~~~v~~v~~~p~~~~l~s~-------- 159 (371)
T d1k8kc_ 109 KFAVGSGSR-------------VISICYFEQENDWWVCKHIK--------KPIRSTVLSLDWHPNSVLLAAG-------- 159 (371)
T ss_dssp EEEEEETTS-------------SEEEEEEETTTTEEEEEEEC--------TTCCSCEEEEEECTTSSEEEEE--------
T ss_pred cceeecccC-------------cceeeeeecccccccccccc--------cccccccccccccccccceecc--------
Confidence 999887443 67788776432111111000 0112344678999999876654
Q ss_pred cccccccCCeEEEEecCCCCCC-------------CceEE---eecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGE-------------GPEIL---HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~-------------~~~~l---~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
+..+.+.+|+....... ....+ ..+...+..++|+|||+.|+..+.++ .+.++|.
T Consensus 160 -----s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~----~i~iwd~ 230 (371)
T d1k8kc_ 160 -----SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS----TVCLADA 230 (371)
T ss_dssp -----ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT----EEEEEEG
T ss_pred -----ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCC----cceEEee
Confidence 23445666664100000 00111 22334456789999999988776443 4666666
Q ss_pred CCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEE
Q 002209 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (953)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~ 527 (953)
..+ ............+.. +.|+|||+.|+..
T Consensus 231 ~~~--~~~~~~~~~~~~v~s------~~fs~d~~~la~g 261 (371)
T d1k8kc_ 231 DKK--MAVATLASETLPLLA------VTFITESSLVAAG 261 (371)
T ss_dssp GGT--TEEEEEECSSCCEEE------EEEEETTEEEEEE
T ss_pred ecc--cceeeeeccccccee------eeecCCCCEEEEE
Confidence 654 222222222222333 7899999887654
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=7e-11 Score=123.99 Aligned_cols=271 Identities=11% Similarity=0.089 Sum_probs=159.1
Q ss_pred eeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEE
Q 002209 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (953)
Q Consensus 180 ~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~ 259 (953)
..|.++. ..+...+|||||+.|+..+ .+..|.++|+++++........... +..+.|+|++..++
T Consensus 11 ~~L~GH~--~~I~~l~~sp~~~~l~s~s---------~Dg~i~iWd~~~~~~~~~~~~h~~~----V~~~~~~~~~~~~~ 75 (317)
T d1vyhc1 11 YALSGHR--SPVTRVIFHPVFSVMVSAS---------EDATIKVWDYETGDFERTLKGHTDS----VQDISFDHSGKLLA 75 (317)
T ss_dssp CEEECCS--SCEEEEEECSSSSEEEEEE---------SSSCEEEEETTTCCCCEEECCCSSC----EEEEEECTTSSEEE
T ss_pred EEEcCCC--CCeEEEEEcCCCCEEEEEe---------CCCeEEEEECCCCCEEEEEeCCCCc----EEEEeeeccccccc
Confidence 3455543 4689999999999888754 2457888898888765443322222 77899999999988
Q ss_pred EEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCC-Ccccc
Q 002209 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-AVYTS 336 (953)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~-~~~~~ 336 (953)
..... ..+...+. ..+... +... .....
T Consensus 76 ~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (317)
T d1vyhc1 76 SCSAD-------------------------------------------------MTIKLWDFQGFECIRTMHGHDHNVSS 106 (317)
T ss_dssp EEETT-------------------------------------------------SCCCEEETTSSCEEECCCCCSSCEEE
T ss_pred ccccc-------------------------------------------------ccccccccccccccccccccccccee
Confidence 76211 11223333 332222 2222 55677
Q ss_pred cccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002209 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (953)
Q Consensus 337 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~ 415 (953)
..|+|+++.++....+. .+.+|++..+. ...+..+. .....++|+||++.++.
T Consensus 107 ~~~~~~~~~~~~~~~d~-------------~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~ 160 (317)
T d1vyhc1 107 VSIMPNGDHIVSASRDK-------------TIKMWEVQTGYCVKTFTGHR-------------EWVRMVRPNQDGTLIAS 160 (317)
T ss_dssp EEECSSSSEEEEEETTS-------------EEEEEETTTCCEEEEEECCS-------------SCEEEEEECTTSSEEEE
T ss_pred eeccCCCceEEeeccCc-------------ceeEeecccceeeeEEccCC-------------CcceeeecccCCCEEEE
Confidence 88999999998877443 88999998544 33343322 22356889999987665
Q ss_pred EEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCc--------------------eEEEEE
Q 002209 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSL--------------------ALVYES 474 (953)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~--------------------~l~~~~ 474 (953)
. +....+.+++. ..++. ..+......+..+.|+|++. .++...
T Consensus 161 ~-------------~~d~~v~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (317)
T d1vyhc1 161 C-------------SNDQTVRVWVV---ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 224 (317)
T ss_dssp E-------------ETTSCEEEEET---TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred E-------------eCCCeEEEEee---ccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc
Confidence 4 33456777775 22222 22333333344455555443 333332
Q ss_pred ecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeE
Q 002209 475 WYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFL 554 (953)
Q Consensus 475 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 554 (953)
.+ + .+.+++..++ +...........+.. +.|+|+|++|+....+ ..|
T Consensus 225 ~d--~--~i~~~~~~~~--~~~~~~~~~~~~v~~------~~~~~~~~~l~s~~~d---------------------g~i 271 (317)
T d1vyhc1 225 RD--K--TIKMWDVSTG--MCLMTLVGHDNWVRG------VLFHSGGKFILSCADD---------------------KTL 271 (317)
T ss_dssp TT--S--EEEEEETTTT--EEEEEEECCSSCEEE------EEECSSSSCEEEEETT---------------------TEE
T ss_pred CC--C--EEEEEECCCC--cEEEEEeCCCCCEEE------EEECCCCCEEEEEECC---------------------CeE
Confidence 22 2 4566666664 222222222222222 7899999998877532 249
Q ss_pred EEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEE
Q 002209 555 DLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILT 600 (953)
Q Consensus 555 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 600 (953)
++||+.+++.......... .+.. .+|++|++.|+.
T Consensus 272 ~iwd~~~~~~~~~~~~h~~----~V~~-------~~~s~~~~~l~s 306 (317)
T d1vyhc1 272 RVWDYKNKRCMKTLNAHEH----FVTS-------LDFHKTAPYVVT 306 (317)
T ss_dssp EEECCTTSCCCEEEECCSS----CEEE-------EEECSSSSCEEE
T ss_pred EEEECCCCcEEEEEcCCCC----CEEE-------EEEcCCCCEEEE
Confidence 9999988876555443221 1222 368899887664
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.38 E-value=9.7e-11 Score=127.79 Aligned_cols=288 Identities=13% Similarity=0.100 Sum_probs=164.1
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCC--------------ccccccccceEEecC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD--------------IYLNAIFDNFVWVNN 254 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~--------------~~~~~~~~~~~wspD 254 (953)
..+...+|||||++||... ...|.++++.+++......... ......+..++|+||
T Consensus 63 ~~V~~l~fs~dg~~lasg~----------d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 132 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGC----------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 132 (388)
T ss_dssp SCCCEEEECTTSSEEEEEC----------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred CcEEEEEECCCCCEEEEEe----------CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC
Confidence 5689999999999887632 3367888887776432211110 011122567899999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCC-
Q 002209 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP- 331 (953)
Q Consensus 255 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~- 331 (953)
|+.|+... ..+.|.+++. .++... +...
T Consensus 133 ~~~l~s~~-------------------------------------------------~dg~v~i~~~~~~~~~~~~~~h~ 163 (388)
T d1erja_ 133 GKFLATGA-------------------------------------------------EDRLIRIWDIENRKIVMILQGHE 163 (388)
T ss_dssp SSEEEEEE-------------------------------------------------TTSCEEEEETTTTEEEEEECCCS
T ss_pred CCcceecc-------------------------------------------------ccccccccccccccccccccccc
Confidence 99998661 1234666777 664333 3333
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceee-ccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINW-RSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~w-spDg 410 (953)
..+..+.|++++..++..+.+ +.+.+||..+........... ......| .+|+
T Consensus 164 ~~v~~~~~~~~~~~~~~~~~~-------------~~i~~~d~~~~~~~~~~~~~~-------------~~~~~~~~~~~~ 217 (388)
T d1erja_ 164 QDIYSLDYFPSGDKLVSGSGD-------------RTVRIWDLRTGQCSLTLSIED-------------GVTTVAVSPGDG 217 (388)
T ss_dssp SCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEECSS-------------CEEEEEECSTTC
T ss_pred ccccccccccccccccccccc-------------eeeeeeecccccccccccccc-------------ccccccccCCCC
Confidence 677889999999999887743 389999998665444332211 1123344 4566
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE-------eecccccCCeeeccCCceEEEEEecccCceEE
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-------HKLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l-------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l 483 (953)
+.++.. +..+.+.+++. .++.....+ ..+...+..+.|+|||+.|+..+.++ .+
T Consensus 218 ~~l~~~-------------~~d~~i~i~~~--~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~----~i 278 (388)
T d1erja_ 218 KYIAAG-------------SLDRAVRVWDS--ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR----SV 278 (388)
T ss_dssp CEEEEE-------------ETTSCEEEEET--TTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS----EE
T ss_pred CeEEEE-------------cCCCeEEEeec--ccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCC----cE
Confidence 655443 33456888885 222222222 12234566789999999988776443 34
Q ss_pred EEEcCCCCCCCc----------EEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCe
Q 002209 484 WVISPGSKDVAP----------RILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPF 553 (953)
Q Consensus 484 ~~~d~~~~~~~~----------~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (953)
.++++.++.... ..........+.. +.|+|||++|+....+ ..
T Consensus 279 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~s~~~~~l~sg~~d---------------------g~ 331 (388)
T d1erja_ 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS------VATTQNDEYILSGSKD---------------------RG 331 (388)
T ss_dssp EEEEC---------------CEEEEEECCSSCEEE------EEECGGGCEEEEEETT---------------------SE
T ss_pred EEEeccCCccccccccccccceeeecccccceEEE------EEECCCCCEEEEEeCC---------------------CE
Confidence 444444321110 0111111111222 7899999998877632 24
Q ss_pred EEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEEC
Q 002209 554 LDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSW 616 (953)
Q Consensus 554 L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~ 616 (953)
|++||+.+++.......... .+..+ .......|+||+..++. .+.. ..|.+|++
T Consensus 332 i~vwd~~~~~~~~~l~~H~~----~V~~~-~~~~~~~~spd~~~l~s-~s~D---g~I~iW~~ 385 (388)
T d1erja_ 332 VLFWDKKSGNPLLMLQGHRN----SVISV-AVANGSSLGPEYNVFAT-GSGD---CKARIWKY 385 (388)
T ss_dssp EEEEETTTCCEEEEEECCSS----CEEEE-EECSSCTTCTTCEEEEE-EETT---SEEEEEEE
T ss_pred EEEEECCCCcEEEEEeCCCC----CEEEE-EEecCcccCCCCCEEEE-EeCC---CEEEEEee
Confidence 99999999887665543322 12221 11223468999876653 3332 35777764
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.36 E-value=4.3e-11 Score=127.56 Aligned_cols=143 Identities=10% Similarity=0.046 Sum_probs=90.5
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..+....+.+++..++....+ +.+.+||+..+... .+..+. ..+..++|+|||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~d-------------~~v~i~d~~~~~~~~~~~~h~-------------~~i~~v~~~p~~ 238 (340)
T d1tbga_ 185 GDVMSLSLAPDTRLFVSGACD-------------ASAKLWDVREGMCRQTFTGHE-------------SDINAICFFPNG 238 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETT-------------TEEEEEETTTTEEEEEECCCS-------------SCEEEEEECTTS
T ss_pred eeEeeeccccccceeEEeecC-------------ceEEEEECCCCcEEEEEeCCC-------------CCeEEEEECCCC
Confidence 445566778888887766533 38999999865543 333221 234678999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE-Ee--ecccccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-LH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~-l~--~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
+.++.. +..+.+.++++ ....... +. .....+..+.|+|+|+.|+.+..++ .|+++|
T Consensus 239 ~~l~s~-------------s~d~~i~~~~~---~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg----~i~iwd 298 (340)
T d1tbga_ 239 NAFATG-------------SDDATCRLFDL---RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF----NCNVWD 298 (340)
T ss_dssp SEEEEE-------------ETTSCEEEEET---TTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTS----CEEEEE
T ss_pred CEEEEE-------------eCCCeEEEEee---cccccccccccccccCceEEEEECCCCCEEEEEECCC----EEEEEE
Confidence 876655 44567888886 3222222 21 2223356789999999988776543 466667
Q ss_pred CCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 488 PGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
+.++ +.......+...+.. +.|+|||++|+...
T Consensus 299 ~~~~--~~~~~~~~H~~~V~~------l~~s~d~~~l~s~s 331 (340)
T d1tbga_ 299 ALKA--DRAGVLAGHDNRVSC------LGVTDDGMAVATGS 331 (340)
T ss_dssp TTTC--CEEEEECCCSSCEEE------EEECTTSSCEEEEE
T ss_pred CCCC--cEEEEEcCCCCCEEE------EEEeCCCCEEEEEc
Confidence 7664 334444443333443 78999999988765
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.36 E-value=1.8e-10 Score=122.50 Aligned_cols=289 Identities=11% Similarity=-0.039 Sum_probs=158.7
Q ss_pred eceEEEEccCCCCCCc-eeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc
Q 002209 163 TGIGIHQLFPDGKLGQ-EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~-~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (953)
++|.|||+.+ .+ ...|.....+..+..++|||||++|+.+.. ....|+++|+++++...-.......
T Consensus 11 ~~v~v~D~~s----~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~--------~~~~v~v~D~~t~~~~~~~~~~~~~ 78 (337)
T d1pbyb_ 11 DKLVVIDTEK----MAVDKVITIADAGPTPMVPMVAPGGRIAYATVN--------KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp TEEEEEETTT----TEEEEEEECTTCTTCCCCEEECTTSSEEEEEET--------TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred CEEEEEECCC----CeEEEEEECCCCCCCccEEEECCCCCEEEEEEC--------CCCeEEEEECCCCcEEEEEecCCCc
Confidence 4789999954 22 233332222346788999999998876432 3568999999998865433222110
Q ss_pred -ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEE
Q 002209 242 -LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (953)
Q Consensus 242 -~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 320 (953)
.......++|+|||+.+++........ . .........+..+|
T Consensus 79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~-------------------------------~------~~~~~~~~~~~~~d 121 (337)
T d1pbyb_ 79 ERVKSLFGAALSPDGKTLAIYESPVRLE-------------------------------L------THFEVQPTRVALYD 121 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEEC-------------------------------S------SCEEECCCEEEEEE
T ss_pred ccccceeeEEEcCCCcEEEEeecCCcce-------------------------------e------eeccccccceeecc
Confidence 001134789999999998772110000 0 00000334667788
Q ss_pred c-CCceeEeC-CCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEE-eccCCCcccCCcccccc
Q 002209 321 L-DGTVKEIG-PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSV 397 (953)
Q Consensus 321 ~-~g~~~~l~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~-l~~~~~~~~~p~~~~~~ 397 (953)
. +++..... ....+..++|||||++++... .++.+||...+.... +......
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---------------~~~~~~d~~~~~~~~~~~~~~~~---------- 176 (337)
T d1pbyb_ 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLG---------------RDLHVMDPEAGTLVEDKPIQSWE---------- 176 (337)
T ss_dssp TTTTEEEEEEECCSSCCCEEECTTSSCEEEES---------------SSEEEEETTTTEEEEEECSTTTT----------
T ss_pred ccCCeEEEeccccCCceEEEEcCCCCEEEEEc---------------CCcceeeeecCcEEEEeecCCcc----------
Confidence 8 77544433 336677899999999998764 156778887654433 2221111
Q ss_pred ccCccceeeccCCCCce----------E--EEEeccCCCcccccccCCeEEEEecCCCCCCCceE--EeecccccCCeee
Q 002209 398 RKGMRSINWRSDKPSTL----------Y--WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI--LHKLDLRYGGISW 463 (953)
Q Consensus 398 ~~~~~~~~wspDg~~i~----------~--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~--l~~~~~~~~~~~~ 463 (953)
....++|++..+. . .....+.. ..........+.++++ ..+.... ............+
T Consensus 177 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 248 (337)
T d1pbyb_ 177 ----AETYAQPDVLAVWNQHESSGVMATPFYTARKDID-PADPTAYRTGLLTMDL---ETGEMAMREVRIMDVFYFSTAV 248 (337)
T ss_dssp ----TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC-TTSGGGEEEEEEEEET---TTCCEEEEEEEECSSCEEEEEE
T ss_pred ----ccceecCCcceeeccccccceeeeeeeeeeeccc-eeeecccCccEEEEEc---CCCcEEEEEecCCCcceEEEEe
Confidence 1122333332211 1 11111111 1111123446777875 3344332 2233334455788
Q ss_pred ccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecC
Q 002209 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGN 543 (953)
Q Consensus 464 SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~ 543 (953)
+++++.++... ..+.++|+.++ +........ ....+ +.|||||++|+....+
T Consensus 249 ~~~~~~~~~~~------~~i~v~d~~~~--~~~~~~~~~-~~~~~------~~~s~dG~~l~v~~~~------------- 300 (337)
T d1pbyb_ 249 NPAKTRAFGAY------NVLESFDLEKN--ASIKRVPLP-HSYYS------VNVSTDGSTVWLGGAL------------- 300 (337)
T ss_dssp CTTSSEEEEEE------SEEEEEETTTT--EEEEEEECS-SCCCE------EEECTTSCEEEEESBS-------------
T ss_pred cccceEEEEcc------ccEEEEECCCC--cEEEEEcCC-CCEEE------EEECCCCCEEEEEeCC-------------
Confidence 99999876542 25777888875 222222211 11122 8899999998765421
Q ss_pred CCCCCCCCCeEEEEECCCCceEEEec
Q 002209 544 GATPEGNIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 544 ~~~~~~~~~~L~~~d~~~~~~~~l~~ 569 (953)
..|.+||.++++...-..
T Consensus 301 --------~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 301 --------GDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp --------SEEEEEETTTCCEEEEEE
T ss_pred --------CcEEEEECCCCcEEEEEE
Confidence 249999999887664433
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.35 E-value=5.4e-11 Score=127.21 Aligned_cols=293 Identities=10% Similarity=-0.032 Sum_probs=160.0
Q ss_pred eEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCC
Q 002209 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (953)
Q Consensus 194 ~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 273 (953)
|++|+||++|+.... ...|.++|+++++..+-...+... ....++|+|||+.++++..
T Consensus 2 ~a~~~~~~~l~~~~~---------~~~v~v~D~~t~~~~~t~~~~~~~---~p~~l~~spDG~~l~v~~~---------- 59 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNY---------PNNLHVVDVASDTVYKSCVMPDKF---GPGTAMMAPDNRTAYVLNN---------- 59 (346)
T ss_dssp CCCCTTCEEEEEEET---------TTEEEEEETTTTEEEEEEECSSCC---SSCEEEECTTSSEEEEEET----------
T ss_pred ccCCCCCcEEEEEcC---------CCEEEEEECCCCCEEEEEEcCCCC---CcceEEECCCCCEEEEEEC----------
Confidence 789999999998653 568999999999876533322211 0458999999999987610
Q ss_pred CCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCC-------CcccccccCCCCc
Q 002209 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-------AVYTSLDPSPDEK 344 (953)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~-------~~~~~~~~SpDG~ 344 (953)
....|.++|+ +++... +... .....++|||||+
T Consensus 60 --------------------------------------~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~ 101 (346)
T d1jmxb_ 60 --------------------------------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK 101 (346)
T ss_dssp --------------------------------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS
T ss_pred --------------------------------------CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCC
Confidence 2246778888 775432 2211 2356789999999
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
++++.......... ........+.+++...+. ...+.... ...+.....+++|++ ++..
T Consensus 102 ~l~v~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-~~~~------- 161 (346)
T d1jmxb_ 102 EVYATVNPTQRLND-HYVVKPPRLEVFSTADGLEAKPVRTFP-----------MPRQVYLMRAADDGS-LYVA------- 161 (346)
T ss_dssp EEEEEEEEEEECSS-CEEECCCEEEEEEGGGGGGBCCSEEEE-----------CCSSCCCEEECTTSC-EEEE-------
T ss_pred EEEEEecCCcceee-eeccCcceEEEEecccceeeeEEEeee-----------ccCceEEEEecCCCE-EEEe-------
Confidence 99877643211000 001112356666665322 11111110 001223455666664 3222
Q ss_pred CcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEeccc----------------------Cce
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT----------------------RRT 481 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~----------------------~~~ 481 (953)
...+.++++ ..++...............++|+++.++....... ...
T Consensus 162 --------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (346)
T d1jmxb_ 162 --------GPDIYKMDV---KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 230 (346)
T ss_dssp --------SSSEEEECT---TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred --------CCcceEEEc---cCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence 123556664 22333222222233455677777776543321110 112
Q ss_pred EEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCC
Q 002209 482 RTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINT 561 (953)
Q Consensus 482 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~ 561 (953)
.+..++..++... ............. ..+++++.++++... ..+++||+.+
T Consensus 231 ~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~----------------------~~v~v~d~~~ 281 (346)
T d1jmxb_ 231 GYLSVDLKTGKTH-TQEFADLTELYFT------GLRSPKDPNQIYGVL----------------------NRLAKYDLKQ 281 (346)
T ss_dssp EEEEEETTTCCEE-EEEEEECSSCEEE------EEECSSCTTEEEEEE----------------------SEEEEEETTT
T ss_pred eEEEEECCCCceE-EEEeecccceeEE------EEEeCCCCEEEEecC----------------------CeEEEEECCC
Confidence 3555565554211 1111111111221 557777777776552 1389999999
Q ss_pred CceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002209 562 GSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (953)
Q Consensus 562 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~ 622 (953)
++..+....... + ...+|||||++++..... ..|.++|..+++..
T Consensus 282 ~~~~~~~~~~~~-----~-------~~va~s~DG~~l~v~~~d----~~v~v~D~~t~~~i 326 (346)
T d1jmxb_ 282 RKLIKAANLDHT-----Y-------YCVAFDKKGDKLYLGGTF----NDLAVFNPDTLEKV 326 (346)
T ss_dssp TEEEEEEECSSC-----C-------CEEEECSSSSCEEEESBS----SEEEEEETTTTEEE
T ss_pred CcEEEEEcCCCC-----E-------EEEEEcCCCCEEEEEeCC----CcEEEEECccCCEE
Confidence 876655443321 1 125789999988764332 46999999887654
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=99.32 E-value=3.6e-14 Score=151.36 Aligned_cols=223 Identities=12% Similarity=0.049 Sum_probs=125.1
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhh
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA 731 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~ 731 (953)
+++..+.|.+ +++.| ||++||++..+..+..+.. ....++..++++||.|+++|. +|+|.+..
T Consensus 46 ~~v~~~~p~~-----~~~~P-vvllHG~~~~~~~w~~~~~--------~~~~~~~~~~~~Gy~V~~~D~---~G~G~S~~ 108 (318)
T d1qlwa_ 46 MYVRYQIPQR-----AKRYP-ITLIHGCCLTGMTWETTPD--------GRMGWDEYFLRKGYSTYVIDQ---SGRGRSAT 108 (318)
T ss_dssp EEEEEEEETT-----CCSSC-EEEECCTTCCGGGGSSCTT--------SCCCHHHHHHHTTCCEEEEEC---TTSTTSCC
T ss_pred EEEEEECCCC-----CCCCc-EEEECCCCCCcCccccCcc--------cchhHHHHHHhCCCEEEEecC---CCCCCCCC
Confidence 5556667754 23477 4568998754332211111 112357789999999999555 57776633
Q ss_pred hhh--hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcc-cEEEEcccCCCCCC--CCcC----
Q 002209 732 NDR--FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF-CCGIARSGAYNRTL--TPFG---- 802 (953)
Q Consensus 732 ~~~--~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~-~a~v~~~~~~d~~~--~~~~---- 802 (953)
... .......++.+.+ +.-.....++++.|||+||.++..++...+... ...+..++...... ....
T Consensus 109 ~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~g~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (318)
T d1qlwa_ 109 DISAINAVKLGKAPASSL----PDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVA 184 (318)
T ss_dssp CCHHHHHHHTTSSCGGGS----CCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHH
T ss_pred ccccCCHHHHHHHHHHHH----HHHhhcccccccccccchhHHHHHHhhhcCccccceeeEeccccccccchhhhhhhHH
Confidence 211 1111111111111 111122356778899999988877766543321 11111111110000 0000
Q ss_pred ----------------cccccchhhhhHHH-------------HHhcCcccccCCCCCcEEEEEeCCCCCCCCchH----
Q 002209 803 ----------------FQNEDRTLWEATST-------------YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTM---- 849 (953)
Q Consensus 803 ----------------~~~~~~~~~~~~~~-------------~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~---- 849 (953)
........|..... +....+......+++|+|++||++|.++| ..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Lii~G~~D~~~p--~~~~~~ 262 (318)
T d1qlwa_ 185 NLSKLAIKLDGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVKPLTSIPVLVVFGDHIEEFP--RWAPRL 262 (318)
T ss_dssp HHHHHHHHHTSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCCCCGGGCGGGTTSCEEEEECSSCTTCT--TTHHHH
T ss_pred HHHHHHhhhccccchhhhcccchhhhhhhhhhhHHHHHHhhhcccccchhhhhhhccCCEEEEecCcCcccC--hhhhHH
Confidence 00000000100000 00113445566778999999999999987 53
Q ss_pred -HHHHHHHHHHhCCCcEEEEEeC-----CCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 850 -QSDRFFNALKGHGALCRLVILP-----FESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 850 -~~~~~~~~l~~~g~~~~~~~~~-----~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
.+..+++.+++.|.+++++.+| |++|......+.+++.+.|.+||+++
T Consensus 263 ~~~~~~~~~l~~~g~~~~~~~lp~~gi~G~gH~~~~e~~~~~va~~i~~wL~~~ 316 (318)
T d1qlwa_ 263 KACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRN 316 (318)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcEEEEecccccCCCcCccccCcCHHHHHHHHHHHHHhc
Confidence 3557788899999999999977 56698765566789999999999986
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.32 E-value=6.6e-10 Score=123.16 Aligned_cols=206 Identities=9% Similarity=-0.034 Sum_probs=126.2
Q ss_pred eEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCC
Q 002209 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (953)
Q Consensus 194 ~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 273 (953)
+....|.+.+.+.... ....|.++|+++++.......+.. +..++|||||++|+++.
T Consensus 24 ~~~~~~~~~~~~v~~~-------d~g~v~v~D~~t~~v~~~~~~g~~-----~~~v~fSpDG~~l~~~s----------- 80 (432)
T d1qksa2 24 QMNDWDLENLFSVTLR-------DAGQIALIDGSTYEIKTVLDTGYA-----VHISRLSASGRYLFVIG----------- 80 (432)
T ss_dssp CCSCCCGGGEEEEEET-------TTTEEEEEETTTCCEEEEEECSSC-----EEEEEECTTSCEEEEEE-----------
T ss_pred eeecCCCCcEEEEEEc-------CCCEEEEEECCCCcEEEEEeCCCC-----eeEEEECCCCCEEEEEc-----------
Confidence 4455566667665532 367899999999987655443332 66899999999998761
Q ss_pred CCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee---EeCC---C-CcccccccCCCCcE
Q 002209 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK---EIGP---P-AVYTSLDPSPDEKY 345 (953)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~---~l~~---~-~~~~~~~~SpDG~~ 345 (953)
..+.+.++|+ +++.+ .+.. + +.+.++.|||||++
T Consensus 81 --------------------------------------~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~ 122 (432)
T d1qksa2 81 --------------------------------------RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122 (432)
T ss_dssp --------------------------------------TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTE
T ss_pred --------------------------------------CCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCE
Confidence 1235677887 66432 2222 2 45567899999999
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
|+.+... .+.+.+||.++++................+ ........+.+||||+.+++..
T Consensus 123 l~vs~~~------------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~s~dg~~~~vs~-------- 181 (432)
T d1qksa2 123 AIAGAYW------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEY-HPEPRVAAILASHYRPEFIVNV-------- 181 (432)
T ss_dssp EEEEEEE------------TTEEEEEETTTCCEEEEEECCEECTTTCCE-ESCCCEEEEEECSSSSEEEEEE--------
T ss_pred EEEEcCC------------CCeEEEEeCccccceeeeccCCccccceec-cCCCceeEEEECCCCCEEEEEE--------
Confidence 9776643 248999999876655443322111000000 1112223467889888655541
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEe--ecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~--~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
...+.+++++. ...+...+. ........++|+|||++++.+..... .+.+++.+++
T Consensus 182 ----~~~~~i~~~d~---~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~---~v~v~d~~~~ 239 (432)
T d1qksa2 182 ----KETGKILLVDY---TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARN---KLVVIDTKEG 239 (432)
T ss_dssp ----TTTTEEEEEET---TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGT---EEEEEETTTT
T ss_pred ----ccCCeEEEEEc---cCCCcceEEEEcccCccccceECCCCCEEEEeccccc---eEEEeecccc
Confidence 34567888885 333322221 22233456899999999888765442 5777787764
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.31 E-value=5.1e-12 Score=129.26 Aligned_cols=194 Identities=12% Similarity=0.016 Sum_probs=110.2
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~ 749 (953)
.|+||++||.+... ..| ...+..|++.||.|+++ |.+|+|.+........... ..+...
T Consensus 16 ~P~ivllHG~~~~~-----------~~~----~~~~~~L~~~g~~vi~~---Dl~G~G~s~~~~~~~~~~~---~~~~~~ 74 (264)
T d1r3da_ 16 TPLVVLVHGLLGSG-----------ADW----QPVLSHLARTQCAALTL---DLPGHGTNPERHCDNFAEA---VEMIEQ 74 (264)
T ss_dssp BCEEEEECCTTCCG-----------GGG----HHHHHHHTTSSCEEEEE---CCTTCSSCC-------CHH---HHHHHH
T ss_pred CCeEEEeCCCCCCH-----------HHH----HHHHHHHHhCCCEEEEE---ecccccccccccccccchh---hhhhhh
Confidence 68999999964211 111 23455677889999994 5567887744332211111 111222
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcC---------------------------
Q 002209 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG--------------------------- 802 (953)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~--------------------------- 802 (953)
+........+++.++||||||.+++.++.++|+.+..++..............
T Consensus 75 ~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (264)
T d1r3da_ 75 TVQAHVTSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLS 154 (264)
T ss_dssp HHHTTCCTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cccccccccCceeeeeecchHHHHHHHHHhCchhccccccccccCCCccccchhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 22222334578999999999999999999999888877765432211000000
Q ss_pred -------cccccchhhhh-------------HHHHHhc------CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHH
Q 002209 803 -------FQNEDRTLWEA-------------TSTYVEM------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (953)
Q Consensus 803 -------~~~~~~~~~~~-------------~~~~~~~------sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~ 856 (953)
+.......... ....... .....+..+++|+|+++|++|..+. .+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~l~i~G~~D~~~~-------~~~~ 227 (264)
T d1r3da_ 155 DWYQQAVFSSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKFQ-------QLAE 227 (264)
T ss_dssp HHTTSGGGTTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHHH-------HHHH
T ss_pred hhhhhhhhcccchHHHHHHHHHHhhhhhhhhHHhhhhccccccccchhhhhccCcceEEEEeCCcHHHH-------HHHh
Confidence 00000000000 0000000 1112345678999999999996432 1222
Q ss_pred HHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 857 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
. . .+++++++++||... .++.+.+.+.|.+||+..
T Consensus 228 ~-~----~~~~~~i~~~gH~~~-~e~P~~~~~~i~~fl~~l 262 (264)
T d1r3da_ 228 S-S----GLSYSQVAQAGHNVH-HEQPQAFAKIVQAMIHSI 262 (264)
T ss_dssp H-H----CSEEEEETTCCSCHH-HHCHHHHHHHHHHHHHHH
T ss_pred c-C----CCeEEEECCCCCchH-HHCHHHHHHHHHHHHHhc
Confidence 1 1 258889999999863 567788899999999874
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=4.1e-10 Score=119.66 Aligned_cols=230 Identities=9% Similarity=0.023 Sum_probs=114.5
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
.....++|||||++|++.... ...+.+|+.+............. ...+..+.++||++
T Consensus 83 ~~p~~l~~spDg~~l~v~~~~------------~~~v~~~~~~~~~~~~~~~~~~~----------~~~~~~v~~s~d~~ 140 (333)
T d1ri6a_ 83 GSLTHISTDHQGQFVFVGSYN------------AGNVSVTRLEDGLPVGVVDVVEG----------LDGCHSANISPDNR 140 (333)
T ss_dssp SCCSEEEECTTSSEEEEEETT------------TTEEEEEEEETTEEEEEEEEECC----------CTTBCCCEECTTSS
T ss_pred CCceEEEEcCCCCEEeecccC------------CCceeeeccccccceecccccCC----------CccceEEEeeecce
Confidence 445678999999999887632 23677787775544433221111 12345688999998
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe-----ec-ccccCCeeeccCCceEEEEEecccCceEEEE
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-----KL-DLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~-----~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 485 (953)
.++.. . .....+.+++. .......... .. ......++|+++++.++...... ....++.
T Consensus 141 ~~~~~-~-----------~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~-~~~~v~~ 205 (333)
T d1ri6a_ 141 TLWVP-A-----------LKQDRICLFTV--SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN-SSVDVWE 205 (333)
T ss_dssp EEEEE-E-----------GGGTEEEEEEE--CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT-TEEEEEE
T ss_pred eeecc-c-----------cccceeeEEEe--ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecccc-CceEEEe
Confidence 76554 1 12345666664 1222211111 11 11224578999999877664433 2234555
Q ss_pred EcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceE
Q 002209 486 ISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (953)
Q Consensus 486 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~ 565 (953)
++...........................+.+++||++++...... +...++.++.+++..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 267 (333)
T d1ri6a_ 206 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA------------------SLITVFSVSEDGSVLS 267 (333)
T ss_dssp SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT------------------TEEEEEEECTTSCCEE
T ss_pred ecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccC------------------CeEEEEEEcCCCCEEE
Confidence 5544431111111111111111100111156899999887665211 1112333333333322
Q ss_pred EEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEecC
Q 002209 566 RIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDF 627 (953)
Q Consensus 566 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~ 627 (953)
........ ..-...+|||||+++++. ......-.+|.+|..+|+.+++..+
T Consensus 268 ~~~~~~~~----------~~p~~~a~spDGk~l~va-~~~~~~v~v~~id~~tG~l~~~~~~ 318 (333)
T d1ri6a_ 268 KEGFQPTE----------TQPRGFNVDHSGKYLIAA-GQKSHHISVYEIVGEQGLLHEKGRY 318 (333)
T ss_dssp EEEEEECS----------SSCCCEEECTTSSEEEEE-CTTTCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEeCCC----------CCeeEEEEeCCCCEEEEE-ECCCCeEEEEEEECCCCcEEEEEec
Confidence 22111100 011235799999987654 3322234577788888887776544
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.25 E-value=5.5e-10 Score=118.79 Aligned_cols=250 Identities=13% Similarity=0.048 Sum_probs=138.9
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccC-CCCCCceeeeecCCCCC
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP-DGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~-~g~~~~~~~l~~~~~~~ 189 (953)
+..++|+|+|+.||+...+ .+.|+.+.. .........+.++ ...
T Consensus 20 ~t~l~~~~~~~~la~~~~~----------------------------------~~~i~~~~~~~~~~~~~~~~~gh-~~~ 64 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPCGK----------------------------------SAFVRCLDDGDSKVPPVVQFTGH-GSS 64 (325)
T ss_dssp CCCCEEETTTTEEEEEETT----------------------------------EEEEEECCSSCCSSCSEEEECTT-TTS
T ss_pred eEEEEECCCCCEEEEEeCC----------------------------------CEEEEEEeCCCCCccceEEEeCC-CCC
Confidence 4578999999999998764 233433321 1111112233322 123
Q ss_pred cccceEecc--CCCeEEEEEeeccccCCCCcceEEEEECCCCcee-ecccC---CCccccccccceEEecCCeEEEEEec
Q 002209 190 KLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PLFQS---PDIYLNAIFDNFVWVNNSTLLVCTIP 263 (953)
Q Consensus 190 ~~~~~~wSP--DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~---~~~~~~~~~~~~~wspDg~~l~~~~~ 263 (953)
.+...+||| ||+.|+... .++ .|.+||...++.. .+... ........+..+.|++||+.|+....
T Consensus 65 ~v~~v~fsP~~~g~~lasgs-------~Dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 135 (325)
T d1pgua1 65 VVTTVKFSPIKGSQYLCSGD-------ESG--KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135 (325)
T ss_dssp CEEEEEECSSTTCCEEEEEE-------TTS--EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred CEEEEEEeeCCCCCEEEEEe-------CCC--CEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeec
Confidence 688899998 566766533 233 4555554433211 11000 00001122668999999999887621
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCC-CcccccccC
Q 002209 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPS 340 (953)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~S 340 (953)
. ....+.+++. +|+ ...+... ..+..++|+
T Consensus 136 ~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 168 (325)
T d1pgua1 136 G-----------------------------------------------RDNFGVFISWDSGNSLGEVSGHSQRINACHLK 168 (325)
T ss_dssp C-----------------------------------------------SSCSEEEEETTTCCEEEECCSCSSCEEEEEEC
T ss_pred c-----------------------------------------------ccceEEEEeecccccceeeeeccccccccccc
Confidence 1 1112334455 554 3344433 677889999
Q ss_pred CCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002209 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (953)
Q Consensus 341 pDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~ 419 (953)
|+++.++++... .+.+.+|+....+.. .+.... .....+..++|+||+..++...
T Consensus 169 ~~~~~~~~~~~~------------d~~v~~~d~~~~~~~~~~~~~~----------~~~~~v~~v~~~pd~~~~l~s~-- 224 (325)
T d1pgua1 169 QSRPMRSMTVGD------------DGSVVFYQGPPFKFSASDRTHH----------KQGSFVRDVEFSPDSGEFVITV-- 224 (325)
T ss_dssp SSSSCEEEEEET------------TTEEEEEETTTBEEEEEECSSS----------CTTCCEEEEEECSTTCCEEEEE--
T ss_pred ccccceEEEeec------------ccccccccccccccceeccccc----------CCCCccEEeeeccccceecccc--
Confidence 999987665532 237889998754433 222221 1113346789999876544431
Q ss_pred ccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeec---cCCceEEEEEecccCceEEEEEcCCCC
Q 002209 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWC---DDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~S---pDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
+..+.|.+||. .++.....+..+...+..+.|+ |||++|+..+.++ .|.++|+.++
T Consensus 225 ----------~~d~~i~iwd~--~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~----~i~iwd~~~~ 283 (325)
T d1pgua1 225 ----------GSDRKISCFDG--KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA----TIRVWDVTTS 283 (325)
T ss_dssp ----------ETTCCEEEEET--TTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS----EEEEEETTTT
T ss_pred ----------ccccceeeeee--ccccccccccccccccccceeeeeccCCCEEEEEeCCC----eEEEEECCCC
Confidence 33457889996 2332233445555556666777 7999988776443 3555566664
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.24 E-value=3.3e-10 Score=122.89 Aligned_cols=312 Identities=6% Similarity=-0.095 Sum_probs=166.5
Q ss_pred eEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCC
Q 002209 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (953)
Q Consensus 194 ~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 273 (953)
.+.+|||+..+.... ....+..+||++|.++++....+.... ...++|+|||+.|++........
T Consensus 25 ~a~~~~~~~~~v~~~----~~~~g~~~~~~~d~~~~~~~~~~~~~~------~~~~a~spDg~~i~~~~~~~~~~----- 89 (368)
T d1mdah_ 25 HGPGAISRRSHITLP----AYFAGTTENWVSCAGCGVTLGHSLGAF------LSLAVAGHSGSDFALASTSFARS----- 89 (368)
T ss_dssp CCCCCCTTEEEEEEC----TTTCSSEEEEEEETTTTEEEEEEEECT------TCEEEECTTSSCEEEEEEEETTT-----
T ss_pred cccCCCCcceeEEee----ccCCCcceEEEEeCCCCcEEEEEeCCC------CCcceECCCCCEEEEEcccCccc-----
Confidence 345677876544331 235567899999999999877655444 33689999999999872110000
Q ss_pred CCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eC--C------CCcccccccCCCC
Q 002209 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IG--P------PAVYTSLDPSPDE 343 (953)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~--~------~~~~~~~~~SpDG 343 (953)
.... ....|.++|. +++... +. . ......++|||||
T Consensus 90 -------------------------~~g~---------~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDG 135 (368)
T d1mdah_ 90 -------------------------AKGK---------RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS 135 (368)
T ss_dssp -------------------------TSSS---------EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTS
T ss_pred -------------------------cccc---------cCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCC
Confidence 0000 2356888888 775432 21 1 1234568999999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
|+|++.... .+.+++||+.+++.......+.... . ........+.+++||+.+++...
T Consensus 136 k~l~va~~~------------~~~v~~~d~~~~~~~~~~~~~~~~~--~---~~~~~~~~v~~~~Dg~~~~~~~~----- 193 (368)
T d1mdah_ 136 ACLLFFLFG------------SSAAAGLSVPGASDDQLTKSASCFH--I---HPGAAATHYLGSCPASLAASDLA----- 193 (368)
T ss_dssp SCEEEEECS------------SSCEEEEEETTTEEEEEEECSSCCC--C---EEEETTEEECCCCTTSCEEEECC-----
T ss_pred CEEEEEeCC------------CCeEEEEECCCCcEeEEeeccCcce--E---ccCCCceEEEEcCCCCEEEEEec-----
Confidence 999987632 2489999998766544333222110 0 00112233667777764433310
Q ss_pred CcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCC
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 503 (953)
......+.... . .............++++|..++.. . .+++.++...+ ....+.....
T Consensus 194 ------~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~g~~~~~~---~---~~v~~~~~~~~--~~~~~~~~~~ 251 (368)
T d1mdah_ 194 ------AAPAAAGIVGA---Q-----CTGAQNCSSQAAQANYPGMLVWAV---A---SSILQGDIPAA--GATMKAAIDG 251 (368)
T ss_dssp ------SSCCCCEECCC---C-----SCTTSCBCSCCEEETTTTEEEECB---S---SCCEEEECCSS--CCEEECCCCS
T ss_pred ------CCceeeeeeec---c-----cccccccceeecccccCcEEEEec---C---CCEEEEeecCC--ceEEEeeccc
Confidence 00111111110 0 001112223446677777654321 1 14666666553 2222211111
Q ss_pred cc------ccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCccccee
Q 002209 504 ED------VYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 577 (953)
Q Consensus 504 ~~------~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~ 577 (953)
.. .....+...+.++++++.++....... ........+|++||.++++....+.....
T Consensus 252 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~------------~~~~~~~~~v~v~D~~t~~~~~~~~~~~~---- 315 (368)
T d1mdah_ 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS------------RSCLAAAENTSSVTASVGQTSGPISNGHD---- 315 (368)
T ss_dssp SCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECS------------SCTTSCEEEEEEEESSSCCEEECCEEEEE----
T ss_pred ccceeeeeeecCCCceeEEEcCCCCEEEEEecCCC------------ceeecCCceEEEEECCCCcEeEEecCCCc----
Confidence 00 000112233678888887766543221 11112235699999999976543332211
Q ss_pred eeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEE
Q 002209 578 TTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQI 624 (953)
Q Consensus 578 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~L 624 (953)
. ...+|||||+.++|...... ..|+++|..+|+....
T Consensus 316 -~-------~~~a~spDG~~~ly~s~~~~--~~v~v~D~~tgk~~~~ 352 (368)
T d1mdah_ 316 -S-------DAIIAAQDGASDNYANSAGT--EVLDIYDAASDQDQSS 352 (368)
T ss_dssp -E-------CEEEECCSSSCEEEEEETTT--TEEEEEESSSCEEEEE
T ss_pred -e-------eEEEECCCCCEEEEEEeCCC--CeEEEEECCCCCEEEE
Confidence 1 12478999997776665543 4799999999976543
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.24 E-value=3.1e-11 Score=126.00 Aligned_cols=209 Identities=11% Similarity=-0.016 Sum_probs=118.7
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCC
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (953)
..+|.+++.... + + .|.||++||.+.... .|.. .... ++.+|.|+++|. +|
T Consensus 14 ~~~g~~i~y~~~---G-----~--g~~vvllHG~~~~~~-----------~~~~----~~~~-L~~~~~vi~~Dl---~G 64 (298)
T d1mj5a_ 14 EIKGRRMAYIDE---G-----T--GDPILFQHGNPTSSY-----------LWRN----IMPH-CAGLGRLIACDL---IG 64 (298)
T ss_dssp EETTEEEEEEEE---S-----C--SSEEEEECCTTCCGG-----------GGTT----TGGG-GTTSSEEEEECC---TT
T ss_pred EECCEEEEEEEE---c-----C--CCcEEEECCCCCCHH-----------HHHH----HHHH-HhcCCEEEEEeC---CC
Confidence 348888886543 1 1 467889999653211 1211 1223 346799999544 57
Q ss_pred CCChhhhh------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC
Q 002209 726 EGDEEAND------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (953)
Q Consensus 726 ~G~~~~~~------~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~ 799 (953)
+|.+.... ........+ .+..+.+.. ..+++.++||||||.+++.++.++|+++++++...+.......
T Consensus 65 ~G~S~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~~~~~~~ 139 (298)
T d1mj5a_ 65 MGDSDKLDPSGPERYAYAEHRDY---LDALWEALD--LGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEW 139 (298)
T ss_dssp STTSCCCSSCSTTSSCHHHHHHH---HHHHHHHTT--CTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCG
T ss_pred CCCCCCCccccccccccchhhhh---hcccccccc--ccccCeEEEecccchhHHHHHHHHHhhhheeeccccccccccc
Confidence 77764321 111222222 222233332 2468999999999999999999999999999887664321110
Q ss_pred C-cCccc-----------------ccc----------------h-hh-----------hhHHHHH---------------
Q 002209 800 P-FGFQN-----------------EDR----------------T-LW-----------EATSTYV--------------- 818 (953)
Q Consensus 800 ~-~~~~~-----------------~~~----------------~-~~-----------~~~~~~~--------------- 818 (953)
. +.... ... . .+ .......
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (298)
T d1mj5a_ 140 ADFPEQDRDLFQAFRSQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADV 219 (298)
T ss_dssp GGSCGGGHHHHHHHHSTTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHH
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhhhhhhhhhccchhhhhhhhhhhhhhhhcchhhhh
Confidence 0 00000 000 0 00 0000000
Q ss_pred ---hcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 819 ---EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 819 ---~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
.......+..+++|+|+++|++|..++ ....++.+.+ ...++++. ++||.. ..+..+.+.+.|.+||+
T Consensus 220 ~~~~~~~~~~~~~~~~P~l~i~g~~d~~~~---~~~~~~~~~~----p~~~~~~~-~~GH~~-~~e~P~~v~~~i~~fl~ 290 (298)
T d1mj5a_ 220 VAIARDYAGWLSESPIPKLFINAEPGALTT---GRMRDFCRTW----PNQTEITV-AGAHFI-QEDSPDEIGAAIAAFVR 290 (298)
T ss_dssp HHHHHHHHHHHTTCCSCEEEEEEEECSSSS---HHHHHHHTTC----SSEEEEEE-EESSCG-GGTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcceeEEEEecCCCCcCh---HHHHHHHHHC----CCCEEEEe-CCCCch-HHhCHHHHHHHHHHHHh
Confidence 000012245678999999999998654 4444443322 23566555 469976 46778899999999998
Q ss_pred Hh
Q 002209 896 KY 897 (953)
Q Consensus 896 ~~ 897 (953)
+.
T Consensus 291 ~~ 292 (298)
T d1mj5a_ 291 RL 292 (298)
T ss_dssp HH
T ss_pred hh
Confidence 84
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.22 E-value=2.3e-10 Score=124.12 Aligned_cols=273 Identities=8% Similarity=-0.058 Sum_probs=142.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCC---
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP--- 186 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~--- 186 (953)
....++|||||+.|++.... .....+......|++||..+ + .....+. ++
T Consensus 66 ~~~~~a~spDg~~i~~~~~~-----------------------~~~~~~g~~d~~v~v~D~~t-~--~~~~~i~-~p~~~ 118 (368)
T d1mdah_ 66 FLSLAVAGHSGSDFALASTS-----------------------FARSAKGKRTDYVEVFDPVT-F--LPIADIE-LPDAP 118 (368)
T ss_dssp TTCEEEECTTSSCEEEEEEE-----------------------ETTTTSSSEEEEEEEECTTT-C--CEEEEEE-ETTSC
T ss_pred CCCcceECCCCCEEEEEccc-----------------------CccccccccCCeEEEEECCC-C--cEeeeec-CCccc
Confidence 34568999999999998763 11111222335689999743 2 1122222 11
Q ss_pred ---CCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc---ccccceEEecCCeEEEE
Q 002209 187 ---DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN---AIFDNFVWVNNSTLLVC 260 (953)
Q Consensus 187 ---~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~---~~~~~~~wspDg~~l~~ 260 (953)
.+.....+.|||||++|++... ....++++|+++++.......+..... .....+.+++||+.+++
T Consensus 119 ~~~~g~~p~~~a~SpDGk~l~va~~--------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~ 190 (368)
T d1mdah_ 119 RFSVGPRVHIIGNCASSACLLFFLF--------GSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAAS 190 (368)
T ss_dssp SCCBSCCTTSEEECTTSSCEEEEEC--------SSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEE
T ss_pred eecccCCccceEECCCCCEEEEEeC--------CCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEE
Confidence 1224557899999999998653 245789999999887654433321100 00112344555554444
Q ss_pred EecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCCCcccccccC
Q 002209 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPS 340 (953)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~~~~~~S 340 (953)
........ .+. ... ..............++
T Consensus 191 ~~~~~~~~-----------------------------------------------~~~-~~~--~~~~~~~~~~~~~~~~ 220 (368)
T d1mdah_ 191 DLAAAPAA-----------------------------------------------AGI-VGA--QCTGAQNCSSQAAQAN 220 (368)
T ss_dssp ECCSSCCC-----------------------------------------------CEE-CCC--CSCTTSCBCSCCEEET
T ss_pred EecCCcee-----------------------------------------------eee-eec--ccccccccceeecccc
Confidence 31110000 000 000 0000001223455677
Q ss_pred CCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002209 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 341 pDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
++|..+. .. .+.+++++..++....+..................+...++++||++.++......
T Consensus 221 ~~g~~~~-~~--------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~ 285 (368)
T d1mdah_ 221 YPGMLVW-AV--------------ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH 285 (368)
T ss_dssp TTTEEEE-CB--------------SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred cCcEEEE-ec--------------CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCC
Confidence 7875443 22 12677777776555544332221110000001123445689999998766553322
Q ss_pred cCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
.. ........++++|+ .+++.............++|||||+.++|....... .|+++|+.++
T Consensus 286 ~~----~~~~~~~~v~v~D~---~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~--~v~v~D~~tg 347 (368)
T d1mdah_ 286 SR----SCLAAAENTSSVTA---SVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTE--VLDIYDAASD 347 (368)
T ss_dssp SS----CTTSCEEEEEEEES---SSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTT--EEEEEESSSC
T ss_pred Cc----eeecCCceEEEEEC---CCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCC--eEEEEECCCC
Confidence 11 11123357899996 444432222233456779999999987777665444 7999998886
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.20 E-value=1.8e-09 Score=114.57 Aligned_cols=258 Identities=12% Similarity=-0.020 Sum_probs=141.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCC--
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD-- 187 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~-- 187 (953)
.+..++|||||++|+.+... + +.|++||+.+ ++ ....+.....
T Consensus 35 ~~~~i~~spDg~~l~v~~~~------------------------~--------~~v~v~D~~t-~~--~~~~~~~~~~~~ 79 (337)
T d1pbyb_ 35 TPMVPMVAPGGRIAYATVNK------------------------S--------ESLVKIDLVT-GE--TLGRIDLSTPEE 79 (337)
T ss_dssp CCCCEEECTTSSEEEEEETT------------------------T--------TEEEEEETTT-CC--EEEEEECCBTTE
T ss_pred CccEEEECCCCCEEEEEECC------------------------C--------CeEEEEECCC-Cc--EEEEEecCCCcc
Confidence 45689999999998765442 0 2678999854 31 1222221111
Q ss_pred -CCcccceEeccCCCeEEEEEeeccc---cCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEec
Q 002209 188 -GAKLNFVTWSQDGKHLAFSIRIDAE---DSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (953)
Q Consensus 188 -~~~~~~~~wSPDG~~laf~~~~~~~---~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~ 263 (953)
+......+|||||++++........ ........+.++|..+++.......... +..++|+|||+.++...
T Consensus 80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~- 153 (337)
T d1pbyb_ 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-----ITMLAWARDGSKLYGLG- 153 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-----CCCEEECTTSSCEEEES-
T ss_pred cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCC-----ceEEEEcCCCCEEEEEc-
Confidence 1245678999999999887653211 1112356788899998876655443332 55789999999998661
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCCCcccccccCC
Q 002209 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPPAVYTSLDPSP 341 (953)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~~~~~~~~~Sp 341 (953)
..+..+|. +++... +..........++|
T Consensus 154 --------------------------------------------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 183 (337)
T d1pbyb_ 154 --------------------------------------------------RDLHVMDPEAGTLVEDKPIQSWEAETYAQP 183 (337)
T ss_dssp --------------------------------------------------SSEEEEETTTTEEEEEECSTTTTTTTBCCC
T ss_pred --------------------------------------------------CCcceeeeecCcEEEEeecCCccccceecC
Confidence 12334555 553322 22222333444555
Q ss_pred CCcEEEEEEec-----------CCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 342 DEKYILISSIH-----------RPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 342 DG~~l~~~~~~-----------~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
+|..+...... ...............+.+++...+........+. ........++|++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 252 (337)
T d1pbyb_ 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM-----------DVFYFSTAVNPAK 252 (337)
T ss_dssp BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC-----------SSCEEEEEECTTS
T ss_pred CcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC-----------CcceEEEEecccc
Confidence 55443211100 0000000001112256677776544332221111 1223456778888
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
+.++.. .+.+.+||+ ..++..........+..++|||||++|+.+... ..|.++|+.+
T Consensus 253 ~~~~~~---------------~~~i~v~d~---~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~----~~i~v~D~~t 310 (337)
T d1pbyb_ 253 TRAFGA---------------YNVLESFDL---EKNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL----GDLAAYDAET 310 (337)
T ss_dssp SEEEEE---------------ESEEEEEET---TTTEEEEEEECSSCCCEEEECTTSCEEEEESBS----SEEEEEETTT
T ss_pred eEEEEc---------------cccEEEEEC---CCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCC----CcEEEEECCC
Confidence 754322 346888996 433333333445556789999999998876432 2688889887
Q ss_pred C
Q 002209 491 K 491 (953)
Q Consensus 491 ~ 491 (953)
.
T Consensus 311 ~ 311 (337)
T d1pbyb_ 311 L 311 (337)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.20 E-value=3.2e-09 Score=112.61 Aligned_cols=68 Identities=13% Similarity=0.224 Sum_probs=49.5
Q ss_pred eeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEE
Q 002209 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (953)
Q Consensus 179 ~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l 258 (953)
.+.|.++. ..+...+|||||++|+... ....|.+||+.+++........... +..++|+|||+.|
T Consensus 48 ~~tL~GH~--~~I~~l~~s~~~~~l~sgs---------~Dg~v~iWd~~~~~~~~~~~~~~~~----v~~v~~~~~~~~l 112 (340)
T d1tbga_ 48 RRTLRGHL--AKIYAMHWGTDSRLLVSAS---------QDGKLIIWDSYTTNKVHAIPLRSSW----VMTCAYAPSGNYV 112 (340)
T ss_dssp EEEECCCS--SCEEEEEECTTSSEEEEEE---------TTTEEEEEETTTTEEEEEEECSCSC----EEEEEECTTSSEE
T ss_pred eEEECCCC--CCEEEEEECCCCCEEEEEE---------CCCceeeeecccceeEEEEeccccc----EEeeEeeccceee
Confidence 34455444 4689999999999998754 2567888899888765443333222 7789999999999
Q ss_pred EEE
Q 002209 259 VCT 261 (953)
Q Consensus 259 ~~~ 261 (953)
+..
T Consensus 113 ~~~ 115 (340)
T d1tbga_ 113 ACG 115 (340)
T ss_dssp EEE
T ss_pred eee
Confidence 876
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=2.8e-10 Score=116.51 Aligned_cols=80 Identities=11% Similarity=-0.004 Sum_probs=56.6
Q ss_pred HHHHHHHc--CcEEEEcCCCCCCCCCChhhhhh-hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002209 704 SVLLWLAR--GFAILGGPTTPIIGEGDEEANDR-FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 704 ~~~~la~~--G~~V~~~~~~~~~G~G~~~~~~~-~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
....|.+. ||.|++ .|.+|+|.+..+.. ......+|+.+.++ . .. +++.|+||||||.+++.+|.++
T Consensus 21 ~~~~l~~~~~~~~v~~---~d~~G~g~S~~~~~~~~~~~~~~l~~~l~----~--l~-~~~~lvGhS~GG~ia~~~a~~~ 90 (268)
T d1pjaa_ 21 LLEYINETHPGTVVTV---LDLFDGRESLRPLWEQVQGFREAVVPIMA----K--AP-QGVHLICYSQGGLVCRALLSVM 90 (268)
T ss_dssp HHHHHHHHSTTCCEEE---CCSSCSGGGGSCHHHHHHHHHHHHHHHHH----H--CT-TCEEEEEETHHHHHHHHHHHHC
T ss_pred HHHHHHhhCCCeEEEE---eCCCCCCCCCCccccCHHHHHHHHHHHHh----c--cC-CeEEEEccccHHHHHHHHHHHC
Confidence 44556654 899999 56678888865432 23333444333333 2 12 6899999999999999999999
Q ss_pred CC-cccEEEEcccC
Q 002209 781 PH-LFCCGIARSGA 793 (953)
Q Consensus 781 p~-~~~a~v~~~~~ 793 (953)
|+ +++.+|++++.
T Consensus 91 p~~~v~~lvl~~~~ 104 (268)
T d1pjaa_ 91 DDHNVDSFISLSSP 104 (268)
T ss_dssp TTCCEEEEEEESCC
T ss_pred CccccceEEEECCC
Confidence 98 69998888763
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.05 E-value=3.2e-08 Score=104.77 Aligned_cols=169 Identities=9% Similarity=-0.009 Sum_probs=97.6
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
+.+..++|+|||++|+..+... ...+.+|+.+.+ ....+..+. ..+..++|+|++
T Consensus 116 ~~v~~v~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~-------------~~v~~~~~~~~~ 171 (325)
T d1pgua1 116 GPISDISWDFEGRRLCVVGEGR-----------DNFGVFISWDSGNSLGEVSGHS-------------QRINACHLKQSR 171 (325)
T ss_dssp SCEEEEEECTTSSEEEEEECCS-----------SCSEEEEETTTCCEEEECCSCS-------------SCEEEEEECSSS
T ss_pred CcEEEEEECCCCCccceeeccc-----------cceEEEEeecccccceeeeecc-------------cccccccccccc
Confidence 5677899999999999887432 225667777643 344443321 234678999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEEe---ecccccCCeeeccCCceEEEEEecccCceEEEEE
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILH---KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~---~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~ 486 (953)
+.++... +..+.+.+++. ...+. ..+. .....+..++|+||+..++++...++ .|.++
T Consensus 172 ~~~~~~~------------~~d~~v~~~d~---~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~---~i~iw 233 (325)
T d1pgua1 172 PMRSMTV------------GDDGSVVFYQG---PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR---KISCF 233 (325)
T ss_dssp SCEEEEE------------ETTTEEEEEET---TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC---CEEEE
T ss_pred cceEEEe------------ecccccccccc---cccccceecccccCCCCccEEeeeccccceecccccccc---ceeee
Confidence 8765541 33457788885 22221 1121 22334567899998654444433332 35555
Q ss_pred cCCCCCCCcEEeecCCCccccCCCCCCCeEec---cCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCc
Q 002209 487 SPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT---STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (953)
Q Consensus 487 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~S---pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~ 563 (953)
|..++ +...........+.+ +.|+ |||++|+....+. .|.+||+.+++
T Consensus 234 d~~~~--~~~~~l~~~~~~v~~------~~~s~~~~dg~~l~s~s~D~---------------------~i~iwd~~~~~ 284 (325)
T d1pgua1 234 DGKSG--EFLKYIEDDQEPVQG------GIFALSWLDSQKFATVGADA---------------------TIRVWDVTTSK 284 (325)
T ss_dssp ETTTC--CEEEECCBTTBCCCS------CEEEEEESSSSEEEEEETTS---------------------EEEEEETTTTE
T ss_pred eeccc--ccccccccccccccc------ceeeeeccCCCEEEEEeCCC---------------------eEEEEECCCCC
Confidence 76664 323333322222222 3455 7898887765322 49999999888
Q ss_pred eEEEeccC
Q 002209 564 KERIWESD 571 (953)
Q Consensus 564 ~~~l~~~~ 571 (953)
..+-+...
T Consensus 285 ~~~~~~~~ 292 (325)
T d1pgua1 285 CVQKWTLD 292 (325)
T ss_dssp EEEEEECC
T ss_pred EEEEEEec
Confidence 76654433
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=99.05 E-value=7.7e-10 Score=121.02 Aligned_cols=117 Identities=8% Similarity=-0.079 Sum_probs=78.4
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcC------cEEEEcCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG------FAILGGPT 720 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G------~~V~~~~~ 720 (953)
.+|..|+..-....+ ...|.||++||.|... ..+ ......|++.| |.|+++|.
T Consensus 89 i~G~~iHf~h~~~~~------~~~~pLlLlHG~P~s~--------------~~w-~~vi~~La~~g~~~~~~f~VIaPDL 147 (394)
T d1qo7a_ 89 IEGLTIHFAALFSER------EDAVPIALLHGWPGSF--------------VEF-YPILQLFREEYTPETLPFHLVVPSL 147 (394)
T ss_dssp ETTEEEEEEEECCSC------TTCEEEEEECCSSCCG--------------GGG-HHHHHHHHHHCCTTTCCEEEEEECC
T ss_pred ECCEEEEEEEEeccC------CCCCEEEEeccccccH--------------HHH-HHHHHhhccccCCcccceeeecccc
Confidence 389999876664432 1267788899986322 111 23455678887 99999555
Q ss_pred CCCCCCCChhhhh---hh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 721 TPIIGEGDEEAND---RF-VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 721 ~~~~G~G~~~~~~---~~-~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
+|+|.|..+. .+ ......|+...++.+ + .++..++|||+||.++..+++.+|+.++++++....
T Consensus 148 ---pG~G~S~~P~~~~~y~~~~~a~~~~~l~~~l---g---~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~~ 215 (394)
T d1qo7a_ 148 ---PGYTFSSGPPLDKDFGLMDNARVVDQLMKDL---G---FGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLCA 215 (394)
T ss_dssp ---TTSTTSCCCCSSSCCCHHHHHHHHHHHHHHT---T---CTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred ---cccCCCCCCCCCCccCHHHHHHHHHHHHhhc---c---CcceEEEEecCchhHHHHHHHHhhccccceeEeeec
Confidence 6888876532 12 344444444443332 2 357889999999999999999999988888876543
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=98.98 E-value=1.2e-09 Score=104.77 Aligned_cols=153 Identities=15% Similarity=-0.009 Sum_probs=94.6
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-- 780 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-- 780 (953)
.....|+++||.|+..+. .|++.+.... ....+++.+.++.+.+.. ..+++.|+||||||.++..++.++
T Consensus 20 ~l~~~l~~~g~~~~~~~~---~~~~~~~~~~---~~~~~~l~~~i~~~~~~~--~~~~v~lvGHSmGG~va~~~~~~~~~ 91 (179)
T d1ispa_ 20 GIKSYLVSQGWSRDKLYA---VDFWDKTGTN---YNNGPVLSRFVQKVLDET--GAKKVDIVAHSMGGANTLYYIKNLDG 91 (179)
T ss_dssp HHHHHHHHTTCCGGGEEE---CCCSCTTCCH---HHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHSSG
T ss_pred HHHHHHHHcCCeEEEEec---CCcccccccc---chhhhhHHHHHHHHHHhc--CCceEEEEeecCcCHHHHHHHHHcCC
Confidence 456678899998876433 3444332221 223344445555554432 346899999999999999999876
Q ss_pred CCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHh
Q 002209 781 PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (953)
Q Consensus 781 p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~ 860 (953)
|++++.+|++++........ . ..........|++.++|..|.+|+ +..+. +.
T Consensus 92 ~~~V~~~V~l~~p~~g~~~~-~-------------------l~~~~~~~~~~~~~i~~~~D~~v~--~~~~~-----l~- 143 (179)
T d1ispa_ 92 GNKVANVVTLGGANRLTTGK-A-------------------LPGTDPNQKILYTSIYSSADMIVM--NYLSR-----LD- 143 (179)
T ss_dssp GGTEEEEEEESCCGGGTCSB-C-------------------CCCSCTTCCCEEEEEEETTCSSSC--HHHHC-----CB-
T ss_pred chhhCEEEEECCCCCCchhh-h-------------------cCCcccccCceEEEEEecCCcccC--chhhc-----CC-
Confidence 56899999988753211000 0 000112245789999999999998 65431 21
Q ss_pred CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 861 HGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 861 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
+ .+.+.+++.+|... ..+ ..+.+.+.+||+.
T Consensus 144 -~--~~~~~~~~~~H~~l-~~~-~~v~~~i~~~L~~ 174 (179)
T d1ispa_ 144 -G--ARNVQIHGVGHIGL-LYS-SQVNSLIKEGLNG 174 (179)
T ss_dssp -T--SEEEEESSCCTGGG-GGC-HHHHHHHHHHHTT
T ss_pred -C--ceEEEECCCCchhh-ccC-HHHHHHHHHHHhc
Confidence 2 25667899999643 222 3566677777653
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=1.9e-07 Score=98.86 Aligned_cols=151 Identities=9% Similarity=0.067 Sum_probs=86.8
Q ss_pred ccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEE
Q 002209 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (953)
Q Consensus 338 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~ 417 (953)
.+.++|+.++....+ ..+.+||+..+......... ........|+|+++.++..
T Consensus 166 ~~~~~~~~~~~~~~d-------------~~i~~~d~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~- 219 (355)
T d1nexb2 166 TVSGHGNIVVSGSYD-------------NTLIVWDVAQMKCLYILSGH------------TDRIYSTIYDHERKRCISA- 219 (355)
T ss_dssp EEEEETTEEEEEETT-------------SCEEEEETTTTEEEEEECCC------------SSCEEEEEEETTTTEEEEE-
T ss_pred ccccccceeeeeccc-------------ceeeeeecccccceeeeecc------------ccccccccccccceeeecc-
Confidence 456778877776633 37899999865543322211 1223467899999876665
Q ss_pred EeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEE
Q 002209 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (953)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 497 (953)
...+.+.+++. .++.....+..+...+..+.|+ ++.|+....++ .+.++|+.+. ....
T Consensus 220 ------------~~d~~i~i~d~--~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg----~i~iwd~~~~--~~~~ 277 (355)
T d1nexb2 220 ------------SMDTTIRIWDL--ENGELMYTLQGHTALVGLLRLS--DKFLVSAAADG----SIRGWDANDY--SRKF 277 (355)
T ss_dssp ------------ETTSCEEEEET--TTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTS----EEEEEETTTC--CEEE
T ss_pred ------------cccceEEeeec--cccccccccccccccccccccc--cceeeeeeccc----cccccccccc--ceec
Confidence 34557888886 2332233344555556667775 46676665433 4556676664 2222
Q ss_pred eecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceE
Q 002209 498 LFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (953)
Q Consensus 498 ~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~ 565 (953)
..... .+.. ...++++++.++... + ..|++||+.+|+..
T Consensus 278 ~~~~~--~~~~-----~~~~~~~~~~l~~g~-d---------------------~~i~vwd~~tg~~~ 316 (355)
T d1nexb2 278 SYHHT--NLSA-----ITTFYVSDNILVSGS-E---------------------NQFNIYNLRSGKLV 316 (355)
T ss_dssp EEECT--TCCC-----CCEEEECSSEEEEEE-T---------------------TEEEEEETTTCCBC
T ss_pred ccccC--CceE-----EEEEcCCCCEEEEEe-C---------------------CEEEEEECCCCCEE
Confidence 22111 1111 135678887666543 1 14999999988754
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.1e-06 Score=91.98 Aligned_cols=219 Identities=12% Similarity=0.011 Sum_probs=108.4
Q ss_pred ceEEEEEc-CCceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCC
Q 002209 314 TQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIP 391 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p 391 (953)
..+..++. +++................+....++....+ +.+.+|+...... ..+..+.
T Consensus 117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-------------~~i~~~d~~~~~~~~~~~~~~------ 177 (342)
T d2ovrb2 117 ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD-------------FMVKVWDPETETCLHTLQGHT------ 177 (342)
T ss_dssp SEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETT-------------SCEEEEEGGGTEEEEEECCCS------
T ss_pred eeEEEeecccccceeeeecccccceeeccccceeeeecCC-------------CeEEEeecccceeeEEEcCcc------
Confidence 34556666 5543333222111122334455556655533 3788999875443 3333221
Q ss_pred ccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCceE
Q 002209 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLAL 470 (953)
Q Consensus 392 ~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~~l 470 (953)
.....+++|++.++.. +..+.|.+|++ ..++. ..+..+...+. .++++++.|
T Consensus 178 ---------~~~~~~~~~~~~l~s~-------------~~dg~i~~~d~---~~~~~~~~~~~~~~~v~--~~~~~~~~l 230 (342)
T d2ovrb2 178 ---------NRVYSLQFDGIHVVSG-------------SLDTSIRVWDV---ETGNCIHTLTGHQSLTS--GMELKDNIL 230 (342)
T ss_dssp ---------SCEEEEEECSSEEEEE-------------ETTSCEEEEET---TTCCEEEEECCCCSCEE--EEEEETTEE
T ss_pred ---------cccccccCCCCEEEEE-------------eCCCeEEEeec---ccceeeeEeccccccee--EEecCCCEE
Confidence 1245677788766554 44567889996 33333 22333333333 445566777
Q ss_pred EEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCC
Q 002209 471 VYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGN 550 (953)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (953)
+..+.++ .+.+++.... +........... ......+++++++++....+
T Consensus 231 ~s~s~d~----~i~iwd~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~s~s~D-------------------- 279 (342)
T d2ovrb2 231 VSGNADS----TVKIWDIKTG--QCLQTLQGPNKH-----QSAVTCLQFNKNFVITSSDD-------------------- 279 (342)
T ss_dssp EEEETTS----CEEEEETTTC--CEEEEECSTTSC-----SSCEEEEEECSSEEEEEETT--------------------
T ss_pred EEEcCCC----EEEEEecccc--ccccccccccee-----eeceeecccCCCeeEEEcCC--------------------
Confidence 7665443 3555565553 222222221111 11114456677777665521
Q ss_pred CCeEEEEECCCCceEEEec-cCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECC
Q 002209 551 IPFLDLFDINTGSKERIWE-SDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWP 617 (953)
Q Consensus 551 ~~~L~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 617 (953)
..|++||+.+++..+-.. ......-..+. ..+|++++..++.-....+.-..++++|..
T Consensus 280 -g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~-------~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 280 -GTVKLWDLKTGEFIRNLVTLESGGSGGVVW-------RIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp -SEEEEEETTTCCEEEEEEECTTGGGTCEEE-------EEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred -CEEEEEECCCCCEEEEEecccCCCCCCCEE-------EEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 249999999887654322 11100000111 246788876555443333344567777754
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.86 E-value=2e-06 Score=94.32 Aligned_cols=253 Identities=10% Similarity=0.050 Sum_probs=138.5
Q ss_pred ceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCcc---ccccCCCCCcceEEEeccCceE--EEeccCCC
Q 002209 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYS---FIVPCGRFPRQVGVWTTDGIFV--RELCDLPL 386 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~---~~~~~~~~~~~i~~~d~~g~~~--~~l~~~~~ 386 (953)
..|+++|+ +|+.....-. ....+++|++|++.|+|+..+.+.. ...+....+..++++.+.+... ..+.....
T Consensus 151 ~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d 230 (430)
T d1qfma1 151 VTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD 230 (430)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred heeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCcccccccccccc
Confidence 46889999 8865433222 2346789999999999998654321 1112233455788887764322 22222110
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCC-----CceEEeec-ccccCC
Q 002209 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-----GPEILHKL-DLRYGG 460 (953)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~-----~~~~l~~~-~~~~~~ 460 (953)
. + .....+..|+||+.+++...... .....+|..++...... ....+... .....
T Consensus 231 ~---~-------~~~~~~~~s~d~~~l~i~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~- 291 (430)
T d1qfma1 231 E---P-------KWMGGAELSDDGRYVLLSIREGC--------DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD- 291 (430)
T ss_dssp C---T-------TCEEEEEECTTSCEEEEEEECSS--------SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-
T ss_pred C---C-------ceEEeeeccCCcceeeEEeeccC--------CccEEEEEeeCCCcccccccccceeEeecccccceE-
Confidence 0 0 11124567899987665532221 23456788875111110 11222211 11111
Q ss_pred eeeccCCceEEEEEecccCceEEEEEcCCCCCCC-cEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEE
Q 002209 461 ISWCDDSLALVYESWYKTRRTRTWVISPGSKDVA-PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYIL 539 (953)
Q Consensus 461 ~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~ 539 (953)
. ...+|..+++..+.+..+.+|..++++..... ...+.......+.. -.++..+.+|+......
T Consensus 292 ~-~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~------~~~~~~~~~lvl~~~~~-------- 356 (430)
T d1qfma1 292 Y-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE------WVACVRSNFLVLCYLHD-------- 356 (430)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEE------EEEEETTTEEEEEEEET--------
T ss_pred E-EecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceee------eEEEEECCEEEEEEEcC--------
Confidence 1 23356666666666666678999998765321 12222211111110 12333444554443221
Q ss_pred EecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002209 540 LNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (953)
Q Consensus 540 ~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g 619 (953)
..+.|+++++++++...+...+.. ++..+ +.++++..+++..++..+|+.+|.+|+.+|
T Consensus 357 ----------~~~~l~v~~~~~~~~~~~~~~~~~----sv~~~-------~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~ 415 (430)
T d1qfma1 357 ----------VKNTLQLHDLATGALLKIFPLEVG----SVVGY-------SGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (430)
T ss_dssp ----------TEEEEEEEETTTCCEEEEECCCSS----EEEEE-------ECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred ----------CEeEEEEEECCCCcEEEecCCCCc----eEeec-------cCCCCCCEEEEEEcCCCCCCeEEEEECCCC
Confidence 245799999999998887654432 11111 224556789999999999999999999988
Q ss_pred Ce
Q 002209 620 KS 621 (953)
Q Consensus 620 ~~ 621 (953)
+.
T Consensus 416 ~~ 417 (430)
T d1qfma1 416 EL 417 (430)
T ss_dssp SC
T ss_pred Cc
Confidence 64
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.85 E-value=6.4e-07 Score=95.96 Aligned_cols=64 Identities=9% Similarity=0.026 Sum_probs=39.5
Q ss_pred CCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 186 ~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
+.....+..++||||+.|+-+.. +....|.++.+++............ ...+..++||+.+++.
T Consensus 37 ~~~~~~s~la~s~d~~~ly~~~~--------~~~~~~~i~~~~~~~~~~~~~~~~~----p~~v~~~~~~~~~~v~ 100 (365)
T d1jofa_ 37 PQDEPISWMTFDHERKNIYGAAM--------KKWSSFAVKSPTEIVHEASHPIGGH----PRANDADTNTRAIFLL 100 (365)
T ss_dssp CTTCCCSEEEECTTSSEEEEEEB--------TEEEEEEEEETTEEEEEEEEECCSS----GGGGCTTSCCEEEEEE
T ss_pred cCCCCCCEEEEcCCCCEEEEEeC--------CcEEEEEEeCCCCeEEEeeecCCCC----cEEEEECCCCCEEEEE
Confidence 33335677899999998876532 3566788887665443322111111 3467788999987765
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=98.84 E-value=1.9e-09 Score=107.86 Aligned_cols=186 Identities=11% Similarity=-0.011 Sum_probs=97.5
Q ss_pred CccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHH
Q 002209 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (953)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~ 748 (953)
..++||++||.... ...| ...+..| .+|.|+.++. .|.+. .++++.+.+
T Consensus 16 ~~~~l~~lhg~~g~-----------~~~~----~~la~~L--~~~~v~~~~~---~g~~~----------~a~~~~~~i- 64 (230)
T d1jmkc_ 16 QEQIIFAFPPVLGY-----------GLMY----QNLSSRL--PSYKLCAFDF---IEEED----------RLDRYADLI- 64 (230)
T ss_dssp CSEEEEEECCTTCC-----------GGGG----HHHHHHC--TTEEEEEECC---CCSTT----------HHHHHHHHH-
T ss_pred CCCeEEEEcCCCCC-----------HHHH----HHHHHHC--CCCEEeccCc---CCHHH----------HHHHHHHHH-
Confidence 36899999996311 1112 1233334 4799998544 45543 233333433
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc---ccEEEEcccCCCCCCCCc---Cccc----------cc--chh
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL---FCCGIARSGAYNRTLTPF---GFQN----------ED--RTL 810 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~---~~a~v~~~~~~d~~~~~~---~~~~----------~~--~~~ 810 (953)
.+.. ...++.|+||||||.+|+.+|.+.|++ +..++...+......... .... .. ...
T Consensus 65 --~~~~--~~~~~~lvGhS~GG~vA~~~A~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (230)
T d1jmkc_ 65 --QKLQ--PEGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNS 140 (230)
T ss_dssp --HHHC--CSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTTTCSGGGS
T ss_pred --HHhC--CCCcEEEEeeccChHHHHHHHHhhhhhCccceeeecccccCccchhhhhhhhhhhhhhhhhhcccccccccc
Confidence 3321 236799999999999999999876644 444444333211100000 0000 00 000
Q ss_pred h-------hhH-HHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCC-Ccc
Q 002209 811 W-------EAT-STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA-ARE 881 (953)
Q Consensus 811 ~-------~~~-~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~-~~~ 881 (953)
. ... ..+...........+++|+++++|++|..++ ... ..+.+. ....++++.+++ +|... ..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~l~i~g~~D~~~~--~~~-~~w~~~---~~~~~~~~~i~g-~H~~ml~~~ 213 (230)
T d1jmkc_ 141 EAVKHGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIP--EWL-ASWEEA---TTGAYRMKRGFG-THAEMLQGE 213 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCC--TTE-ECSGGG---BSSCEEEEECSS-CGGGTTSHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccccCcceeeeecCCcccc--hhH-HHHHHh---ccCCcEEEEEcC-CChhhcCCc
Confidence 0 000 1111111223446788999999999999876 432 222221 223578889996 89743 233
Q ss_pred cHHHHHHHHHHHHHH
Q 002209 882 SIMHVLWETDRWLQK 896 (953)
Q Consensus 882 ~~~~~~~~i~~fl~~ 896 (953)
...++.+.|.+||++
T Consensus 214 ~~~~va~~I~~~L~~ 228 (230)
T d1jmkc_ 214 TLDRNAGILLEFLNT 228 (230)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhh
Confidence 345555666666653
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.83 E-value=4.2e-08 Score=103.00 Aligned_cols=179 Identities=13% Similarity=0.127 Sum_probs=112.8
Q ss_pred cCcEEEEcCCCCCCCCCChhh-----------hhhhHHHHHHHHHHHHHHHHHcCCCCCCcE-EEEEeChHHHHHHHHHH
Q 002209 711 RGFAILGGPTTPIIGEGDEEA-----------NDRFVEQLVACAEAAVEEVVRRGVAHPSKI-AVGGHSYGAFMTANLLA 778 (953)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~-----------~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i-~l~G~S~GG~~a~~~a~ 778 (953)
..|-|++++.+|. ++|-+.. ...+..-.+.|..++-..|.+.-.| +++ +|+|.||||+.|+..++
T Consensus 77 ~kyfVI~~n~lG~-~~gSs~p~s~~p~tg~~~g~~FP~iti~D~v~aq~~Ll~~LGI--~~l~~viG~SmGGmqAl~wa~ 153 (357)
T d2b61a1 77 DRYFFISSNVLGG-CKGTTGPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEHLGI--SHLKAIIGGSFGGMQANQWAI 153 (357)
T ss_dssp TTCEEEEECCTTC-SSSSSCTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHTTC--CCEEEEEEETHHHHHHHHHHH
T ss_pred CceEEEEecccCC-ccccCCcCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhCc--ceEEEEecccHHHHHHHHHHH
Confidence 5589999887654 2222111 0112123367777777777665334 466 88899999999999999
Q ss_pred hCCCcccEEEEcccCCC-------------------CCCCCcCcccc---------------------------------
Q 002209 779 HAPHLFCCGIARSGAYN-------------------RTLTPFGFQNE--------------------------------- 806 (953)
Q Consensus 779 ~~p~~~~a~v~~~~~~d-------------------~~~~~~~~~~~--------------------------------- 806 (953)
++|++++.+|++++..- .....-.|...
T Consensus 154 ~~Pd~v~~~i~i~~~a~~s~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~ 233 (357)
T d2b61a1 154 DYPDFMDNIVNLCSSIYFSAEAIGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATK 233 (357)
T ss_dssp HSTTSEEEEEEESCCSSCCHHHHHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBC
T ss_pred hhhHHHhhhcccccccccchhHHHHHHHHHHHHHcCCCCCCCCcccCCCchhHHHHHHHHHHhhccCHHHHHHHhccccc
Confidence 99999999999887421 00000000000
Q ss_pred -cchhh------h--------------hHHHH-------HhcCc-------ccccCCCCCcEEEEEeCCCCCCCCchHHH
Q 002209 807 -DRTLW------E--------------ATSTY-------VEMSP-------FMSANKLKKPILLVHGEEDNNSGTLTMQS 851 (953)
Q Consensus 807 -~~~~~------~--------------~~~~~-------~~~sp-------~~~~~~i~~P~Li~~G~~D~~v~~~~~~~ 851 (953)
....| + +...| ...++ ...+++|++|+|+|..+.|...| +++.
T Consensus 234 ~~~~~~~~~~~vesyL~~~g~kf~~rfDan~yl~l~~a~~~~D~~~~~~~l~~aL~~I~a~vLvi~~~sD~lFp--p~~~ 311 (357)
T d2b61a1 234 SDGSFWGDYFQVESYLSYQGKKFLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFK--PIDL 311 (357)
T ss_dssp TTCCTTSCCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSC--HHHH
T ss_pred cccccccchhhHHHHHHHHHHHHHhhCCHHHHHHHHHHhhhcccccccccHHHHHhhcCCCEEEEEeCCccccC--HHHH
Confidence 00000 0 00111 11111 12367899999999999999998 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCC-CccCCCcccHHHHHHHHHHHHH
Q 002209 852 DRFFNALKGHGALCRLVILPFE-SHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~-~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
+++.+.|+..++.+++++++.. ||.-. ..+.+.+.+.|.+||+
T Consensus 312 ~~~a~~l~~~~~~v~~~~I~S~~GHdaf-L~e~~~~~~~I~~fL~ 355 (357)
T d2b61a1 312 YKSKQLLEQSGVDLHFYEFPSDYGHDAF-LVDYDQFEKRIRDGLA 355 (357)
T ss_dssp HHHHHHHHHTTCEEEEEEECCTTGGGHH-HHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEECCCCCcccc-CcCHHHHHHHHHHHHc
Confidence 9999999999999999999964 77421 1223455566666664
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.80 E-value=9.6e-08 Score=100.35 Aligned_cols=106 Identities=6% Similarity=0.004 Sum_probs=63.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++||..+.+ +.|+|||+.... .....+.......
T Consensus 13 ~I~~l~fsp~~~~L~s~s~D---------------------------------g~v~iwd~~~~~--~~~~~~~~~~h~~ 57 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSWD---------------------------------GSLTVYKFDIQA--KNVDLLQSLRYKH 57 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETT---------------------------------SEEEEEEEETTT--TEEEEEEEEECSS
T ss_pred CEEEEEEeCCCCEEEEEECC---------------------------------CeEEEEEccCCC--cceEEEEecCCCC
Confidence 47789999999999998876 367999985422 1111121122334
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
.+....|+|++..++++.. ....+++++...+............ ......+.+++..++..
T Consensus 58 ~V~~v~f~~~~~~~l~sg~--------~d~~v~~w~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 118 (342)
T d1yfqa_ 58 PLLCCNFIDNTDLQIYVGT--------VQGEILKVDLIGSPSFQALTNNEAN---LGICRICKYGDDKLIAA 118 (342)
T ss_dssp CEEEEEEEESSSEEEEEEE--------TTSCEEEECSSSSSSEEECBSCCCC---SCEEEEEEETTTEEEEE
T ss_pred CEEEEEEeCCCCCEEEEcc--------cccceeeeecccccccccccccccc---ccccccccccccccccc
Confidence 6889999998776666543 2456788887766544333222211 02233455666655544
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.79 E-value=6.1e-07 Score=94.71 Aligned_cols=284 Identities=10% Similarity=0.001 Sum_probs=147.2
Q ss_pred EeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCC
Q 002209 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (953)
Q Consensus 195 ~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 274 (953)
.+++||++|+... .+..|.++|+.+++........... +..++|+||+. |+...
T Consensus 18 c~~~~~~~l~tgs---------~Dg~i~vWd~~~~~~~~~l~~H~~~----V~~l~~s~~~~-l~s~s------------ 71 (355)
T d1nexb2 18 CLQFEDNYVITGA---------DDKMIRVYDSINKKFLLQLSGHDGG----VWALKYAHGGI-LVSGS------------ 71 (355)
T ss_dssp EEEEETTEEEEEE---------TTTEEEEEETTTTEEEEEEECCSSC----EEEEEEETTTE-EEEEE------------
T ss_pred EEEECCCEEEEEe---------CCCeEEEEECCCCcEEEEEECCCCC----EEEEEEcCCCE-EEEEe------------
Confidence 4677899887644 2567888999888765443322222 77899999774 44331
Q ss_pred CCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeC-CC---CcccccccCCCCcEEEEE
Q 002209 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG-PP---AVYTSLDPSPDEKYILIS 349 (953)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~-~~---~~~~~~~~SpDG~~l~~~ 349 (953)
..+.|.+++. .++..... .. .......++++++.++..
T Consensus 72 -------------------------------------~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (355)
T d1nexb2 72 -------------------------------------TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 114 (355)
T ss_dssp -------------------------------------TTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEE
T ss_pred -------------------------------------cccccccccccccccccccccccccccccccccccccceeeee
Confidence 1234555566 44322221 11 223456678999999888
Q ss_pred EecCCccccccCCCCCcceEEEeccCceEEEeccCCCcc----cCCc----ccccc-ccCccceeeccCCCCceEEEEec
Q 002209 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE----DIPI----AFNSV-RKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~----~~p~----~~~~~-~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
+.+. .|.+|++............... ..+. ..... .....-..+.++|+.++..
T Consensus 115 ~~d~-------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---- 177 (355)
T d1nexb2 115 SRDN-------------TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG---- 177 (355)
T ss_dssp ETTS-------------EEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEE----
T ss_pred cCCC-------------cEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeee----
Confidence 7443 8999998754322111100000 0000 00000 0000112345555544333
Q ss_pred cCCCcccccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEee
Q 002209 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (953)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 499 (953)
.....+.++++ ..++. ..............|+|++..++....++ .+.+++..++ ......
T Consensus 178 ---------~~d~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~i~i~d~~~~--~~~~~~ 239 (355)
T d1nexb2 178 ---------SYDNTLIVWDV---AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT----TIRIWDLENG--ELMYTL 239 (355)
T ss_dssp ---------ETTSCEEEEET---TTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS----CEEEEETTTC--CEEEEE
T ss_pred ---------cccceeeeeec---ccccceeeeeccccccccccccccceeeecccccc----eEEeeecccc--cccccc
Confidence 33457788885 33322 22233344556688999999988776543 3556666664 223333
Q ss_pred cCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeee
Q 002209 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (953)
Q Consensus 500 ~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~ 579 (953)
......+ ..++.++++|+....+ ..+++||+.++...........
T Consensus 240 ~~h~~~v--------~~~~~~~~~l~~~~~d---------------------g~i~iwd~~~~~~~~~~~~~~~------ 284 (355)
T d1nexb2 240 QGHTALV--------GLLRLSDKFLVSAAAD---------------------GSIRGWDANDYSRKFSYHHTNL------ 284 (355)
T ss_dssp CCCSSCC--------CEEEECSSEEEEECTT---------------------SEEEEEETTTCCEEEEEECTTC------
T ss_pred ccccccc--------cccccccceeeeeecc---------------------cccccccccccceecccccCCc------
Confidence 3222222 2234455666655421 2489999987765433222211
Q ss_pred EeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002209 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (953)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~ 622 (953)
. .-..+++++. ++...+. ..++++++.+|+..
T Consensus 285 ~------~~~~~~~~~~-~l~~g~d----~~i~vwd~~tg~~~ 316 (355)
T d1nexb2 285 S------AITTFYVSDN-ILVSGSE----NQFNIYNLRSGKLV 316 (355)
T ss_dssp C------CCCEEEECSS-EEEEEET----TEEEEEETTTCCBC
T ss_pred e------EEEEEcCCCC-EEEEEeC----CEEEEEECCCCCEE
Confidence 0 0123556665 4444432 36999999888653
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=98.77 E-value=1.2e-08 Score=105.50 Aligned_cols=172 Identities=15% Similarity=0.104 Sum_probs=97.5
Q ss_pred cCcEEEEcCCCCCCCCCChhhhh-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC----C
Q 002209 711 RGFAILGGPTTPIIGEGDEEAND-----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA----P 781 (953)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~~-----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~----p 781 (953)
.++.|+..+. .|+|.+.... ...+....++.+++.... ...++.|+||||||.+|+.+|.+. +
T Consensus 87 ~~~~V~al~~---pG~~~~~~~~~~~~~~s~~~~a~~~~~~i~~~~-----~~~P~vL~GhS~GG~vA~e~A~~l~~~~g 158 (283)
T d2h7xa1 87 EERDFLAVPL---PGYGTGTGTGTALLPADLDTALDAQARAILRAA-----GDAPVVLLGHSGGALLAHELAFRLERAHG 158 (283)
T ss_dssp TTCCEEEECC---TTCCBC---CBCCEESSHHHHHHHHHHHHHHHH-----TTSCEEEEEETHHHHHHHHHHHHHHHHHS
T ss_pred CCceEEEEeC---CCCCCCCCCccccccCCHHHHHHHHHHHHHHhc-----CCCceEEEEeccchHHHHHHHHhhHHHcC
Confidence 4688998444 5666543321 234555555544443221 235799999999999999998764 4
Q ss_pred CcccEEEEcccCCCCCCCCcC-c-------------ccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCc
Q 002209 782 HLFCCGIARSGAYNRTLTPFG-F-------------QNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTL 847 (953)
Q Consensus 782 ~~~~a~v~~~~~~d~~~~~~~-~-------------~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~ 847 (953)
..+.++|++.+.......... + .............+.+.........+++|+|+++|++|..++
T Consensus 159 ~~v~~LvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~~Pvl~i~g~~d~~~~-- 236 (283)
T d2h7xa1 159 APPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGRYARFLAGPRPGRSSAPVLLVRASEPLGDW-- 236 (283)
T ss_dssp CCCSEEEEESCCCTTCCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHSCCCCCCCSCEEEEEESSCSSCC--
T ss_pred CCceEEEEecCCccccccchhhhhhhhHHHhhcccccccccHHHHHHHHHHHHHhhccccccCCCeEEEEeCCCCCCC--
Confidence 568888887654221100000 0 000000000001111111112235688999999999999987
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 848 TMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 848 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
......+.+.+ ...++++.+|| +|.....+....+.+.|.+||++
T Consensus 237 ~~~~~~w~~~~---~~~~~~~~v~G-~H~~ml~e~~~~vA~~i~~~L~~ 281 (283)
T d2h7xa1 237 QEERGDWRAHW---DLPHTVADVPG-DHFTMMRDHAPAVAEAVLSWLDA 281 (283)
T ss_dssp CGGGCCCSCCC---SSCSEEEEESS-CTTHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCCcEEEEEcC-CCcccccCCHHHHHHHHHHHHHh
Confidence 66544432222 23468888998 88643345677788889999875
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=98.72 E-value=5e-07 Score=94.78 Aligned_cols=180 Identities=14% Similarity=0.038 Sum_probs=113.2
Q ss_pred cCcEEEEcCCCCCCCCCChhhh-----------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002209 711 RGFAILGGPTTPIIGEGDEEAN-----------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (953)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~-----------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (953)
.-|-|++++.+|. |+|-+... ..+..-.+.|+.++-..|.+.-.|+ +--+|+|.||||+.|+..|.+
T Consensus 84 ~~yfVI~~n~lG~-~~~ss~~~s~~p~~~~~yg~~fP~~t~~D~v~~~~~ll~~LGI~-~l~~viG~SmGGmqAl~wA~~ 161 (362)
T d2pl5a1 84 NQYFIICSNVIGG-CKGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESLGIE-KLFCVAGGSMGGMQALEWSIA 161 (362)
T ss_dssp TTCEEEEECCTTC-SSSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHTTCS-SEEEEEEETHHHHHHHHHHHH
T ss_pred cccEEEeeccccC-cccccCccccccccccccCcCCccchhHHHHHHHHHHHHHhCcC-eeEEEeehhHHHHHHHHHHHh
Confidence 4588999777653 33322110 1111223677777777776654453 234588999999999999999
Q ss_pred CCCcccEEEEcccCCC-------------------CCCCCcCccccc--------ch-----------------------
Q 002209 780 APHLFCCGIARSGAYN-------------------RTLTPFGFQNED--------RT----------------------- 809 (953)
Q Consensus 780 ~p~~~~a~v~~~~~~d-------------------~~~~~~~~~~~~--------~~----------------------- 809 (953)
+|+.++.+|++++... .....-.|.... +.
T Consensus 162 yPd~v~~~v~ia~sa~~s~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~~ 241 (362)
T d2pl5a1 162 YPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRG 241 (362)
T ss_dssp STTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSS
T ss_pred CchHhhhhcccccccccCHHHHHHHHHHHHHHhcCCccccCCcccCChhHHHHHHHHHHHHHHcCchhhhhhhccccccc
Confidence 9999999999886421 000000000000 00
Q ss_pred -----hhh----------------hH-------HHHHhcCc------ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHH
Q 002209 810 -----LWE----------------AT-------STYVEMSP------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (953)
Q Consensus 810 -----~~~----------------~~-------~~~~~~sp------~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~ 855 (953)
.+. +. ..+...+. ...+++|+.|+|+|..+.|..+| +++.+++.
T Consensus 242 ~~~~~~~~ve~yl~~~g~k~~~rfDan~yl~l~~a~~~~Di~~~~~l~~aL~~I~AkvLvi~~~sD~lFp--p~~~~~~a 319 (362)
T d2pl5a1 242 NILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYP--PAQSREIV 319 (362)
T ss_dssp CTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSC--HHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCCHHHHHHHHhhhhcccccccccHHHHHhhCCCCEEEEEeCcccCcC--HHHHHHHH
Confidence 000 00 11111111 12367899999999999999999 99999999
Q ss_pred HHHHhCCCcEEEEEeCC-CCccCCCcccHHHHHHHHHHHHH
Q 002209 856 NALKGHGALCRLVILPF-ESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 856 ~~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
+.|+..+.++++++++. .||.-. -.+...+.+.|.+||+
T Consensus 320 ~~l~~a~~~v~~~eI~S~~GHdaF-L~e~~~~~~~I~~FL~ 359 (362)
T d2pl5a1 320 KSLEAADKRVFYVELQSGEGHDSF-LLKNPKQIEILKGFLE 359 (362)
T ss_dssp HHHHHTTCCEEEEEECCCBSSGGG-GSCCHHHHHHHHHHHH
T ss_pred HHHHhCCCCeEEEEeCCCCCcchh-ccCHHHHHHHHHHHHc
Confidence 99999999999998885 577532 2223456667777765
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.71 E-value=9.7e-07 Score=94.48 Aligned_cols=154 Identities=10% Similarity=-0.041 Sum_probs=76.2
Q ss_pred ceEEEEEc--CCceeEe-----CC-CCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce---EEEec
Q 002209 314 TQLVLVSL--DGTVKEI-----GP-PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF---VRELC 382 (953)
Q Consensus 314 ~~l~~~~~--~g~~~~l-----~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~---~~~l~ 382 (953)
..|++++. +|..... .. +.....++|+|||+++.++... ..+|.+++.+++. ...+.
T Consensus 167 d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~------------~~~V~v~~~~~~~~~~~~~~~ 234 (365)
T d1jofa_ 167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA------------GNRICEYVIDPATHMPVYTHH 234 (365)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTTCCEEEEEE
T ss_pred CEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC------------CCEEEEEEecCCCceEEEEee
Confidence 45666665 4543322 11 2566788999999977666522 3478888887432 22221
Q ss_pred cCCCcc-cCC---ccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE---ee--
Q 002209 383 DLPLAE-DIP---IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL---HK-- 453 (953)
Q Consensus 383 ~~~~~~-~~p---~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l---~~-- 453 (953)
..+... ..+ ............+.++|||+.++.. ++.+.. .....+..+.+ ...+..... ..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs-nr~~~~------~~~~~i~~~~~--~~~g~~~~~~~~~~~~ 305 (365)
T d1jofa_ 235 SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS-SRANKF------ELQGYIAGFKL--RDCGSIEKQLFLSPTP 305 (365)
T ss_dssp EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE-EEESST------TSCCEEEEEEE--CTTSCEEEEEEEEECS
T ss_pred eeccccccccccccccccccCCccceEECCCCCEEEEE-cccCCC------ccceEEEEEEe--cCCCceeeEeEeeEEE
Confidence 111100 000 0000111223458999999976543 333221 11223444443 122222221 11
Q ss_pred -cccccCCeeecc-CCceEEEEEecccCceEEEEEcCC
Q 002209 454 -LDLRYGGISWCD-DSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 454 -~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
.......++++| ||++|+.+... .....+|.++.+
T Consensus 306 ~~G~~p~~i~~~p~~G~~l~va~~~-s~~v~v~~~~~~ 342 (365)
T d1jofa_ 306 TSGGHSNAVSPCPWSDEWMAITDDQ-EGWLEIYRWKDE 342 (365)
T ss_dssp SCCTTCCCEEECTTCTTEEEEECSS-SCEEEEEEEETT
T ss_pred cCCCCccEEEecCCCCCEEEEEeCC-CCeEEEEEEeCC
Confidence 112345688998 89988777433 343456666543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.63 E-value=2.7e-06 Score=93.10 Aligned_cols=282 Identities=12% Similarity=0.053 Sum_probs=143.1
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
.....+||||++|||..+.+ +++...|+++|+++|+....+- +... ...++|++|++.|+|+.........
T Consensus 127 ~~~~~~Spd~~~la~s~d~~----G~e~~~l~v~Dl~tg~~~~~~i-~~~~----~~~~~W~~D~~~~~Y~~~~~~~~~~ 197 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSAS----GSDWVTIKFMKVDGAKELPDVL-ERVK----FSCMAWTHDGKGMFYNAYPQQDGKS 197 (430)
T ss_dssp EEEEEECTTSSEEEEEEEET----TCSCEEEEEEETTTTEEEEEEE-EEEC----SCCEEECTTSSEEEEEECCCCSSCC
T ss_pred ecceEecCCCCEEEEEeccc----cCchheeEEeccCcceeccccc-cccc----ccceEEcCCCCEEEEEEeccccCcc
Confidence 34467899999999988755 7788999999999998654321 1111 3478999999999988432211100
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC--ceeEeCCC----CcccccccCCCC
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--TVKEIGPP----AVYTSLDPSPDE 343 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g--~~~~l~~~----~~~~~~~~SpDG 343 (953)
. +...+.....++|+..+ +. +...+... .....+..|+||
T Consensus 198 ~---------------------------------~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~ 244 (430)
T d1qfma1 198 D---------------------------------GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG 244 (430)
T ss_dssp S---------------------------------SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS
T ss_pred c---------------------------------ccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCc
Confidence 0 00000002246777777 44 22333332 234456789999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
++|++.......+ ...+++.++.............. +. .... .+...+ ...+|..+++.++..
T Consensus 245 ~~l~i~~~~~~~~--------~~~~~~~d~~~~~~~~~~~~~~~---~~-~~~~-~~~~~~-~~~~~~~~~~~Tn~~--- 307 (430)
T d1qfma1 245 RYVLLSIREGCDP--------VNRLWYCDLQQESNGITGILKWV---KL-IDNF-EGEYDY-VTNEGTVFTFKTNRH--- 307 (430)
T ss_dssp CEEEEEEECSSSS--------CCEEEEEEGGGSSSSSCSSCCCE---EE-ECSS-SSCEEE-EEEETTEEEEEECTT---
T ss_pred ceeeEEeeccCCc--------cEEEEEeeCCCccccccccccee---Ee-eccc-ccceEE-EecCCceeecccCcc---
Confidence 9998776433111 12466666642111000000000 00 0000 000011 222444333332211
Q ss_pred CcccccccCCeEEEEecCCCCCC--CceEEee-cccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeec
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGE--GPEILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD 500 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~--~~~~l~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 500 (953)
..+..|+.+++ .+.. ..+.+.. .+..+..-.++-.+.+|++....+ ...+|++++++++ +...+..
T Consensus 308 ------a~~~~L~~~~~--~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~-~~~~l~v~~~~~~--~~~~~~~ 376 (430)
T d1qfma1 308 ------SPNYRLINIDF--TDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD-VKNTLQLHDLATG--ALLKIFP 376 (430)
T ss_dssp ------CTTCEEEEEET--TBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET-TEEEEEEEETTTC--CEEEEEC
T ss_pred ------cccceeEEecC--CCCccccceEEecccCcceeeeEEEEECCEEEEEEEcC-CEeEEEEEECCCC--cEEEecC
Confidence 23557888876 2222 1233432 333333233445566777665544 4468999999885 3344433
Q ss_pred CCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceE
Q 002209 501 RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (953)
Q Consensus 501 ~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~ 565 (953)
.....+.+ ++..++...+.|.. ++... .+.+|.+|+++++.+
T Consensus 377 ~~~~sv~~------~~~~~~~~~~~~~~--------------ss~~t---P~~~y~~Dl~t~~~~ 418 (430)
T d1qfma1 377 LEVGSVVG------YSGQKKDTEIFYQF--------------TSFLS---PGIIYHCDLTKEELE 418 (430)
T ss_dssp CCSSEEEE------EECCTTCSEEEEEE--------------ECSSC---CCEEEEEETTSSSCC
T ss_pred CCCceEee------ccCCCCCCEEEEEE--------------cCCCC---CCeEEEEECCCCCcc
Confidence 33222221 23334444454443 23332 345999999998654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.62 E-value=7.1e-08 Score=103.83 Aligned_cols=261 Identities=14% Similarity=0.039 Sum_probs=128.8
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeecc---c-------cCCCCcceEEEEECCCCcee-
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDA---E-------DSSSSKLRVWVADVDTGKAR- 232 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~---~-------~~~~~~~~l~~~d~~~g~~~- 232 (953)
+|.++|+.+ .+..++...+.+......++||||++++....... . ........+-.+|.++.+..
T Consensus 95 rVavIDl~t----~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~ 170 (441)
T d1qnia2 95 RVARIRLDI----MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW 170 (441)
T ss_dssp EEEEEETTT----TEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred EEEEEECCC----CcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence 568889854 55555544666667788899999998765543221 0 00011223456787776542
Q ss_pred ecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCcc----ccchhhhhhcCCcchhhhh
Q 002209 233 PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDI----IQVRTFQDLLKDEYDEDLF 308 (953)
Q Consensus 233 ~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~~~ 308 (953)
++.-... ...+.++|||++++++......... +........ ...+.... ....|++..
T Consensus 171 qI~v~~~------p~~v~~spdGk~a~vt~~nse~~~~----------id~~t~~~~d~i~v~n~p~~~--~~~~dGk~~ 232 (441)
T d1qnia2 171 QVIVDGN------LDNTDADYTGKYATSTCYNSERAVD----------LAGTMRNDRDWVVVFNVERIA--AAVKAGNFK 232 (441)
T ss_dssp EEEESSC------CCCEEECSSSSEEEEEESCTTCCSS----------HHHHTCSSBCEEEEEEHHHHH--HHHHTTCCB
T ss_pred EEecCCC------ccceEECCCCCEEEEEecCCCceEE----------EeccCcceEEEEEeCCccceE--EEecCCCEE
Confidence 3322222 5589999999999987443322210 000000000 00000000 011122211
Q ss_pred hhhccceEEEEEc---CCceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCC
Q 002209 309 DYYATTQLVLVSL---DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP 385 (953)
Q Consensus 309 ~~~~~~~l~~~~~---~g~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~ 385 (953)
.. +......++. .+..+.|..+.....+.+||||++++.+.. ....+.+||++.-. .+....
T Consensus 233 ~v-~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~------------~~~tvsv~d~~k~~--~~~~~~ 297 (441)
T d1qnia2 233 TI-GDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGK------------LSPTVSVIAIDKLD--DLFEDK 297 (441)
T ss_dssp CC-TTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECT------------TSSBEEEEEGGGHH--HHTTTS
T ss_pred Ee-CCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCC------------cCCcEEEEEeehhh--hHhhcc
Confidence 11 2223334443 234555655566778999999999987752 24489999986311 000000
Q ss_pred Cc-ccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCC----CCCCCce-E---E-----
Q 002209 386 LA-EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEP----VQGEGPE-I---L----- 451 (953)
Q Consensus 386 ~~-~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~----~~g~~~~-~---l----- 451 (953)
.. ...-........++..-+|+++|. +|.+- ....++..|+++. ..+.+.. . +
T Consensus 298 ~~~~~~~~~~~~~glgplh~~fd~~g~--~yts~-----------~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~ 364 (441)
T d1qnia2 298 IELRDTIVAEPELGLGPLHTTFDGRGN--AYTTL-----------FIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQ 364 (441)
T ss_dssp SCGGGGEEECCBCCSCEEEEEECSSSE--EEEEE-----------TTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC
T ss_pred CCcceEEEeecccccCcccceecCCce--EEEcc-----------cccceEEEeccchhhhhhccCCCceeEeccccccC
Confidence 00 000000000111222346777764 55522 2234677776410 0122111 1 1
Q ss_pred eecccccCCeeeccCCceEEEEE
Q 002209 452 HKLDLRYGGISWCDDSLALVYES 474 (953)
Q Consensus 452 ~~~~~~~~~~~~SpDg~~l~~~~ 474 (953)
..+.....+.+++||||+|+...
T Consensus 365 ~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 365 PGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp EEEEEETTTTSTTCCCCEEEEEE
T ss_pred CCCCccccccccCCCCcEEEecC
Confidence 34445567789999999999875
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.60 E-value=4.7e-07 Score=97.32 Aligned_cols=205 Identities=11% Similarity=-0.038 Sum_probs=107.6
Q ss_pred eccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCC
Q 002209 196 WSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLV 275 (953)
Q Consensus 196 wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 275 (953)
.+|||++|+... ..+..|.++|+++++..++...+... ....+.++|||+.+++.........
T Consensus 79 gtpDGr~lfV~d--------~~~~rVavIDl~t~k~~~ii~iP~g~---gphgi~~spdg~t~YV~~~~~~~v~------ 141 (441)
T d1qnia2 79 GRYDGKYLFIND--------KANTRVARIRLDIMKTDKITHIPNVQ---AIHGLRLQKVPKTNYVFCNAEFVIP------ 141 (441)
T ss_dssp TEEEEEEEEEEE--------TTTTEEEEEETTTTEEEEEEECTTCC---CEEEEEECCSSBCCEEEEEECSCEE------
T ss_pred ccCCCCEEEEEc--------CCCCEEEEEECCCCcEeeEEecCCCC---CccceEEeccCCEEEEEeccCCccc------
Confidence 479999885532 24679999999999887765544321 1557899999997765522111100
Q ss_pred CCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCCCcccccccCCCCcEEEEEEecC
Q 002209 276 PLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSIHR 353 (953)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~~~~~~~~~SpDG~~l~~~~~~~ 353 (953)
..+++.. ...+. ....+..+|. +.+ ..++.-++....+.+||||+++++++...
T Consensus 142 ------~~~dg~~------------~~~~~------~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~ns 197 (441)
T d1qnia2 142 ------QPNDGTD------------FSLDN------SYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNS 197 (441)
T ss_dssp ------SSCSSSC------------CCGGG------EEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCT
T ss_pred ------ccCcccc------------ccccc------ccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCC
Confidence 0000000 00000 1123445666 443 33343345678899999999998887432
Q ss_pred CccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccC
Q 002209 354 PYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPR 432 (953)
Q Consensus 354 ~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~ 432 (953)
+ .+..++..+. +...+.. ........++|||+.++. ...
T Consensus 198 e------------~~~~id~~t~~~~d~i~v--------------~n~p~~~~~~~dGk~~~v--------------~~~ 237 (441)
T d1qnia2 198 E------------RAVDLAGTMRNDRDWVVV--------------FNVERIAAAVKAGNFKTI--------------GDS 237 (441)
T ss_dssp T------------CCSSHHHHTCSSBCEEEE--------------EEHHHHHHHHHTTCCBCC--------------TTC
T ss_pred C------------ceEEEeccCcceEEEEEe--------------CCccceEEEecCCCEEEe--------------CCC
Confidence 1 1111122111 1111111 012235678999985432 122
Q ss_pred CeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 433 DIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 433 ~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
+.+.+.+. ..... ..+.. .....++.+||||++++.+...+. .+-++|.
T Consensus 238 ~v~vvd~~---~~~~v~~~IPv-gksPhGv~vSPDGkyl~~~~~~~~---tvsv~d~ 287 (441)
T d1qnia2 238 KVPVVDGR---GESEFTRYIPV-PKNPHGLNTSPDGKYFIANGKLSP---TVSVIAI 287 (441)
T ss_dssp CCCEEECS---SSCSSEEEECC-BSSCCCEEECTTSCEEEEECTTSS---BEEEEEG
T ss_pred CcEEEEcc---cCCceEEEEeC-CCCccCceECCCCCEEEEeCCcCC---cEEEEEe
Confidence 23333332 33233 33332 333567999999999888754432 3555554
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=98.60 E-value=2.5e-07 Score=97.67 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=47.2
Q ss_pred ccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC-CCCccCCCcccHHHHHHHHHHHHH
Q 002209 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP-FESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 825 ~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
.+++|+.|+|+|.++.|..+| +++.+++.+.++. .++.+++ ..||.-. -.+.+.+...+.+||+
T Consensus 311 aL~~I~a~~LvI~~~sD~lFP--p~~~~e~a~~l~~----a~~~~I~S~~GHDaF-L~e~~~~~~~I~~FL~ 375 (376)
T d2vata1 311 ALAMITQPALIICARSDGLYS--FDEHVEMGRSIPN----SRLCVVDTNEGHDFF-VMEADKVNDAVRGFLD 375 (376)
T ss_dssp HHTTCCSCEEEEECTTCSSSC--HHHHHHHHHHSTT----EEEEECCCSCGGGHH-HHTHHHHHHHHHHHHT
T ss_pred HHhhCCCCEEEEEeCcccCcC--HHHHHHHHHhcCC----CeEEEECCCCCcccc-ccCHHHHHHHHHHHHc
Confidence 367899999999999999998 9999999888753 5888888 4577421 1223455556666664
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.60 E-value=5.3e-06 Score=86.67 Aligned_cols=240 Identities=11% Similarity=-0.017 Sum_probs=131.2
Q ss_pred cceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002209 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (953)
Q Consensus 192 ~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~ 271 (953)
..|+|.+||+ |+|+.. ....|+++++++++........... ...+++++||+.++......
T Consensus 43 EG~~~D~~G~-Ly~~D~--------~~g~I~ri~p~g~~~~~~~~~~~~~----p~gla~~~dG~l~va~~~~~------ 103 (319)
T d2dg1a1 43 EGLNFDRQGQ-LFLLDV--------FEGNIFKINPETKEIKRPFVSHKAN----PAAIKIHKDGRLFVCYLGDF------ 103 (319)
T ss_dssp EEEEECTTSC-EEEEET--------TTCEEEEECTTTCCEEEEEECSSSS----EEEEEECTTSCEEEEECTTS------
T ss_pred EeCEECCCCC-EEEEEC--------CCCEEEEEECCCCeEEEEEeCCCCC----eeEEEECCCCCEEEEecCCC------
Confidence 4699999997 777531 3568999999987655443222211 45788999998666441000
Q ss_pred CCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC----CcccccccCCCCcEE
Q 002209 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----AVYTSLDPSPDEKYI 346 (953)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~----~~~~~~~~SpDG~~l 346 (953)
.....++.++. ++....+... .......+.|||+ |
T Consensus 104 ---------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l 143 (319)
T d2dg1a1 104 ---------------------------------------KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-F 143 (319)
T ss_dssp ---------------------------------------SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-E
T ss_pred ---------------------------------------ccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-e
Confidence 02234666666 4444443322 3345678999997 5
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (953)
.++...... ..-...++.++.+++..+.+...- .....++|+|||+.+++. +
T Consensus 144 ~vtd~~~~~------~~~~g~v~~~~~dg~~~~~~~~~~-------------~~pnGia~s~dg~~lyva-d-------- 195 (319)
T d2dg1a1 144 YFTDFRGYS------TNPLGGVYYVSPDFRTVTPIIQNI-------------SVANGIALSTDEKVLWVT-E-------- 195 (319)
T ss_dssp EEEECCCBT------TBCCEEEEEECTTSCCEEEEEEEE-------------SSEEEEEECTTSSEEEEE-E--------
T ss_pred eeccccccc------ccCcceeEEEecccceeEEEeecc-------------ceeeeeeeccccceEEEe-c--------
Confidence 555422110 111236888888877666554310 123468999999876554 2
Q ss_pred cccccCCeEEEEecCCCCCCCceEEe----ec---ccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEee
Q 002209 427 VEVTPRDIIYTQQAEPVQGEGPEILH----KL---DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (953)
Q Consensus 427 ~~~~~~~~l~~~d~~~~~g~~~~~l~----~~---~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 499 (953)
...+.|+.+++ ..++....... .. .....++++..||+ |+.+.+.. + +|++++.++. .....
T Consensus 196 ---~~~~~I~~~d~-~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~-g--~V~~~~p~G~---~l~~i 264 (319)
T d2dg1a1 196 ---TTANRLHRIAL-EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQ-G--RVLVFNKRGY---PIGQI 264 (319)
T ss_dssp ---GGGTEEEEEEE-CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETT-T--EEEEECTTSC---EEEEE
T ss_pred ---ccCCceEEEEE-cCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCC-C--EEEEECCCCc---EEEEE
Confidence 23457888886 22332222211 11 11234578888997 44444433 2 7999998762 22222
Q ss_pred cCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 500 ~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
..+....-.....-.+.|.+++..++....
T Consensus 265 ~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 265 LIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp ECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred eCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 222111000000112668887777666553
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.60 E-value=2.5e-06 Score=88.63 Aligned_cols=244 Identities=14% Similarity=0.114 Sum_probs=130.3
Q ss_pred eeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEE
Q 002209 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (953)
Q Consensus 179 ~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l 258 (953)
.+.++.++.+..+..++++|||+ |+++.. ....||.++.++. ...+...+.. ...++|++||+.+
T Consensus 18 ~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~--------~~~~I~~i~p~g~-~~~~~~~~~~-----~~gla~~~dG~l~ 82 (302)
T d2p4oa1 18 AKIITSFPVNTFLENLASAPDGT-IFVTNH--------EVGEIVSITPDGN-QQIHATVEGK-----VSGLAFTSNGDLV 82 (302)
T ss_dssp EEEEEEECTTCCEEEEEECTTSC-EEEEET--------TTTEEEEECTTCC-EEEEEECSSE-----EEEEEECTTSCEE
T ss_pred ccEEEECCCCCCcCCEEECCCCC-EEEEeC--------CCCEEEEEeCCCC-EEEEEcCCCC-----cceEEEcCCCCeE
Confidence 44556667666677899999997 555432 3568999998764 4444443332 5688999999855
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc---CCceeEeCC---CC
Q 002209 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DGTVKEIGP---PA 332 (953)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~---~g~~~~l~~---~~ 332 (953)
+... ....+++++. .+....+.. ..
T Consensus 83 v~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (302)
T d2p4oa1 83 ATGW-------------------------------------------------NADSIPVVSLVKSDGTVETLLTLPDAI 113 (302)
T ss_dssp EEEE-------------------------------------------------CTTSCEEEEEECTTSCEEEEEECTTCS
T ss_pred EEec-------------------------------------------------CCceEEEEEecccccceeeccccCCcc
Confidence 5431 1123444444 344444432 14
Q ss_pred cccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002209 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (953)
Q Consensus 333 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~ 412 (953)
....+++.+||+.++..+ ....++.++..++........+... +............+. .|+..
T Consensus 114 ~~n~i~~~~~g~~~v~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ngi~--~~~~~ 176 (302)
T d2p4oa1 114 FLNGITPLSDTQYLTADS-------------YRGAIWLIDVVQPSGSIWLEHPMLA--RSNSESVFPAANGLK--RFGNF 176 (302)
T ss_dssp CEEEEEESSSSEEEEEET-------------TTTEEEEEETTTTEEEEEEECGGGS--CSSTTCCSCSEEEEE--EETTE
T ss_pred ccceeEEccCCCEEeecc-------------ccccceeeeccCCcceeEecCCccc--eeeccCccccccccc--ccCCc
Confidence 456788999996544332 1237888888876544332221110 000000001112233 34554
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc--eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP--EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~--~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
+++. + .....++.++. ...+.. ...........++++++||+ |+++...+ .+|+++++++
T Consensus 177 l~~~-~-----------~~~~~i~~~~~--~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~~~---~~V~~i~p~G 238 (302)
T d2p4oa1 177 LYVS-N-----------TEKMLLLRIPV--DSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATHIY---NSVVRIAPDR 238 (302)
T ss_dssp EEEE-E-----------TTTTEEEEEEB--CTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECBTT---CCEEEECTTC
T ss_pred eeee-c-----------CCCCeEEeccc--cccccccccccccCCCCCcceEECCCCC-EEEEEcCC---CcEEEECCCC
Confidence 4443 1 33567888885 222221 12222334456799999997 55554433 2699998876
Q ss_pred CCCCcEEeecCCCccccCCCCCCCeEe---ccCCCEEEEEe
Q 002209 491 KDVAPRILFDRSSEDVYSDPGSPMMRR---TSTGTYVIAKI 528 (953)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~p~~~~---SpDG~~l~~~~ 528 (953)
. ...+...... +. +.-.++| ++|++.|+...
T Consensus 239 ~---~~~~~~~~~~-~~---~pt~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 239 S---TTIIAQAEQG-VI---GSTAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp C---EEEEECGGGT-CT---TEEEEEECCSTTTTTEEEEEE
T ss_pred C---EEEEEecCCC-CC---CceEEEEcCCCCCCCEEEEEC
Confidence 3 2223221110 00 0001667 67888877664
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=98.57 E-value=1.3e-07 Score=99.17 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=60.6
Q ss_pred HHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc
Q 002209 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL 783 (953)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~ 783 (953)
....|+++||.|+.++ ..|+|.+............++...++.+ +.+++.|+||||||.++..++.++|++
T Consensus 33 ~~~~L~~~G~~V~~~~---~~g~g~s~~~~~~~~~l~~~i~~~~~~~------~~~~v~lvGhS~GG~~~~~~~~~~p~~ 103 (319)
T d1cvla_ 33 IQSDLQSHGAKVYVAN---LSGFQSDDGPNGRGEQLLAYVKQVLAAT------GATKVNLIGHSQGGLTSRYVAAVAPQL 103 (319)
T ss_dssp HHHHHHHTTCCEEECC---CBCSSCTTSTTSHHHHHHHHHHHHHHHH------CCSCEEEEEETTHHHHHHHHHHHCGGG
T ss_pred HHHHHHHCCCEEEEec---CCCCCCCCCCcccHHHHHHHHHHHHHHh------CCCCEEEEeccccHHHHHHHHHHCccc
Confidence 4567899999999954 4677766544444444444443333322 347999999999999999999999999
Q ss_pred ccEEEEcccCC
Q 002209 784 FCCGIARSGAY 794 (953)
Q Consensus 784 ~~a~v~~~~~~ 794 (953)
++.+|+++++.
T Consensus 104 v~~vv~i~~p~ 114 (319)
T d1cvla_ 104 VASVTTIGTPH 114 (319)
T ss_dssp EEEEEEESCCT
T ss_pred cceEEEECCCC
Confidence 99999988753
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=98.55 E-value=3.3e-07 Score=94.35 Aligned_cols=83 Identities=13% Similarity=-0.026 Sum_probs=62.7
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
.....|+++||.|+.+++ .|+|.+. .....+++.++++++.+.-. .++|.|+||||||.++.+++.++|+
T Consensus 51 ~~~~~L~~~Gy~v~~~d~---~g~g~~d-----~~~sae~la~~i~~v~~~~g--~~kV~lVGhS~GG~~a~~~l~~~p~ 120 (317)
T d1tcaa_ 51 NWIPLSTQLGYTPCWISP---PPFMLND-----TQVNTEYMVNAITALYAGSG--NNKLPVLTWSQGGLVAQWGLTFFPS 120 (317)
T ss_dssp THHHHHHTTTCEEEEECC---TTTTCSC-----HHHHHHHHHHHHHHHHHHTT--SCCEEEEEETHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCeEEEecC---CCCCCCc-----hHhHHHHHHHHHHHHHHhcc--CCceEEEEeCchHHHHHHHHHHCCC
Confidence 456788999999999555 4444432 23445667788888877632 3689999999999999999999874
Q ss_pred ---cccEEEEcccCCC
Q 002209 783 ---LFCCGIARSGAYN 795 (953)
Q Consensus 783 ---~~~a~v~~~~~~d 795 (953)
+++.+|.+++.+.
T Consensus 121 ~~~~V~~~v~i~~~~~ 136 (317)
T d1tcaa_ 121 IRSKVDRLMAFAPDYK 136 (317)
T ss_dssp GTTTEEEEEEESCCTT
T ss_pred cchheeEEEEeCCCCC
Confidence 6888898887654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.54 E-value=9.9e-07 Score=90.67 Aligned_cols=199 Identities=12% Similarity=0.094 Sum_probs=112.3
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
+....+++|+..++... ...+.+++...++......... ....++++++.+++...+
T Consensus 83 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~------ 139 (287)
T d1pgua2 83 PKVASANNDGFTAVLTN----------DDDLLILQSFTGDIIKSVRLNS-------PGSAVSLSQNYVAVGLEE------ 139 (287)
T ss_dssp EEEEEECSSSEEEEEET----------TSEEEEEETTTCCEEEEEECSS-------CEEEEEECSSEEEEEETT------
T ss_pred eeeeeeccCCceEEEee----------cccceeeeccceeeeeeccccc-------eeeeeeccCcceeeeccc------
Confidence 45567888887766532 3467788877776554433222 245677888887766210
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCC--CcccccccCCCCcEE
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP--AVYTSLDPSPDEKYI 346 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~--~~~~~~~~SpDG~~l 346 (953)
...+..+++ +.+ ...+... ..+..++|||||++|
T Consensus 140 ------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 177 (287)
T d1pgua2 140 ------------------------------------------GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 177 (287)
T ss_dssp ------------------------------------------TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEE
T ss_pred ------------------------------------------cceeeeeeccccceeeeeeeccCCceeEEEeccCcccc
Confidence 122445555 322 2223222 567889999999999
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (953)
+....+. .|.+||+..+....... . .....+..++|+|+++..... . ..+...
T Consensus 178 ~~g~~dg-------------~i~i~d~~~~~~~~~~~-~----------~h~~~v~~~~~~p~~~~~~~~--~-~~~~~l 230 (287)
T d1pgua2 178 AAGDVMG-------------KILLYDLQSREVKTSRW-A----------FRTSKINAISWKPAEKGANEE--E-IEEDLV 230 (287)
T ss_dssp EEEETTS-------------CEEEEETTTTEEEECCS-C----------CCSSCEEEEEECCCC--------C-CSCCEE
T ss_pred ccccccc-------------cccceeecccccccccc-c----------ccccccceeeecccccccccc--c-CCCCee
Confidence 8887443 89999998665432111 0 111334678899988643322 0 011111
Q ss_pred cccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCceEEEEEecccCceEEEEE
Q 002209 427 VEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (953)
Q Consensus 427 ~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~ 486 (953)
...+....+++|++ ..+.+. ..+..+...+..+.|+||++ |+..+.++ ..++|.+
T Consensus 231 ~sgs~D~~i~iw~~--~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~--~v~iW~i 286 (287)
T d1pgua2 231 ATGSLDTNIFIYSV--KRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADA--CIKRWNV 286 (287)
T ss_dssp EEEETTSCEEEEES--SCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTS--CEEEEEE
T ss_pred EeecCCCeEEEEEC--CCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECCC--eEEEEEE
Confidence 12234567899996 233333 33345566788899999985 55554433 3477754
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.53 E-value=4.2e-06 Score=87.22 Aligned_cols=58 Identities=9% Similarity=-0.002 Sum_probs=35.8
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc-eeec---ccCCCccccccccceEEecCCe-EEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPL---FQSPDIYLNAIFDNFVWVNNST-LLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~-~~~l---t~~~~~~~~~~~~~~~wspDg~-~l~~~ 261 (953)
.+...+|||||++||..+ . +..|.+||++++. ...+ ..+.. .+..++|+|++. .|+..
T Consensus 13 ~I~~l~fsp~~~~L~s~s-------~--Dg~v~iwd~~~~~~~~~~~~~~~h~~-----~V~~v~f~~~~~~~l~sg 75 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITS-------W--DGSLTVYKFDIQAKNVDLLQSLRYKH-----PLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp CEEEEEEEGGGTEEEEEE-------T--TSEEEEEEEETTTTEEEEEEEEECSS-----CEEEEEEEESSSEEEEEE
T ss_pred CEEEEEEeCCCCEEEEEE-------C--CCeEEEEEccCCCcceEEEEecCCCC-----CEEEEEEeCCCCCEEEEc
Confidence 689999999999998865 2 3355555554432 2222 12222 277899998765 45433
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.51 E-value=7.2e-06 Score=85.35 Aligned_cols=216 Identities=9% Similarity=0.102 Sum_probs=120.6
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCc-cccccccceEEecCCeEEEEEecCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI-YLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.....++|||+.|+... ....|.+++.+++....+....+. .++. ...+++.+||+ |+++........
T Consensus 73 P~Gl~~~~dg~~l~vad---------~~~~i~~~~~~g~~~~~~~~~~~g~~~~~-pndl~~d~~G~-lyvtd~~~~~~~ 141 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVAD---------MRLGLLVVQTDGTFEEIAKKDSEGRRMQG-CNDCAFDYEGN-LWITAPAGEVAP 141 (314)
T ss_dssp EEEEEECSSSSEEEEEE---------TTTEEEEEETTSCEEECCSBCTTSCBCBC-CCEEEECTTSC-EEEEECBCBCTT
T ss_pred ceeEEEeCCCCEEEEEE---------CCCeEEEEeCCCcEEEEEeccccccccCC-CcEEEECCCCC-EEEecCccCccc
Confidence 44578999998776643 245689999988765444322221 1111 34678889996 455521111000
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccCCCCc----
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEK---- 344 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDG~---- 344 (953)
. . ...... ...+.||+++.+|+...+... .....++|+||++
T Consensus 142 ~--------------~------------~~~~~~-------~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~ 188 (314)
T d1pjxa_ 142 A--------------D------------YTRSMQ-------EKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPY 188 (314)
T ss_dssp S--------------C------------CCBTTS-------SSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEE
T ss_pred c--------------c------------ccceec-------cCCceEEEEeecCceeEeeCCcceeeeeEECCCCCccee
Confidence 0 0 000000 034678888887766665544 4445778999875
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEecc-CceEE--E-eccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVR--E-LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~--~-l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
+|+++. . ..+.|+.++++ .+... + ....+... ..++.++++.+||+ +|.+.
T Consensus 189 ~lyv~d-~-----------~~~~i~~~d~~~~g~~~~~~~~~~~~~~~---------~~~pdGiavD~~Gn--lyVa~-- 243 (314)
T d1pjxa_ 189 QLIVAE-T-----------PTKKLWSYDIKGPAKIENKKVWGHIPGTH---------EGGADGMDFDEDNN--LLVAN-- 243 (314)
T ss_dssp EEEEEE-T-----------TTTEEEEEEEEETTEEEEEEEEEECCCCS---------SCEEEEEEEBTTCC--EEEEE--
T ss_pred EEEEEe-e-----------cccceEEeeccCccccceeeEEEEccccc---------cccceeeEEecCCc--EEEEE--
Confidence 454443 1 13478888876 22222 1 11211110 01234678888886 33322
Q ss_pred cCCCcccccccCCeEEEEecCCCCCCCce-EEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~d~~~~~g~~~~-~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
...+.|++++. ++++.. .+........+++|.||++.|+.+.... .+||.+++..
T Consensus 244 ---------~~~g~I~~~dp---~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~---g~i~~~~~~~ 299 (314)
T d1pjxa_ 244 ---------WGSSHIEVFGP---DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN---NAVWKFEWQR 299 (314)
T ss_dssp ---------ETTTEEEEECT---TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT---TEEEEEECSS
T ss_pred ---------cCCCEEEEEeC---CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCC---CcEEEEECCC
Confidence 23468999984 555543 3443334556799999999887765432 3799998765
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=5.4e-06 Score=89.58 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=87.4
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..+..++||||| .|+..+.+ +.|.+||+..+.. ..+..... ..+....+..++|||||
T Consensus 185 ~~~~~v~~s~dg-~lasgs~D-------------g~i~iwd~~~~~~~~~~~~~~~-------l~~h~~~V~~l~~spdg 243 (393)
T d1sq9a_ 185 QFATSVDISERG-LIATGFNN-------------GTVQISELSTLRPLYNFESQHS-------MINNSNSIRSVKFSPQG 243 (393)
T ss_dssp CCCCEEEECTTS-EEEEECTT-------------SEEEEEETTTTEEEEEEECCC----------CCCCCEEEEEECSST
T ss_pred CcEEEEEECCCC-EEEEEeCC-------------CcEEEEeecccccccccccccc-------cccccceEEEccccccc
Confidence 446678999998 55544423 4899999986543 32222111 01222456789999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE-------------eecccccCCeeeccCCceEEEEEecc
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-------------HKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l-------------~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
+.|+.... |+ ....+.+||+ ..+.....+ ..+...+..++|||||+.|+..+.+.
T Consensus 244 ~~l~sgs~--D~--------t~~~i~lwd~--~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~ 311 (393)
T d1sq9a_ 244 SLLAIAHD--SN--------SFGCITLYET--EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 311 (393)
T ss_dssp TEEEEEEE--ET--------TEEEEEEEET--TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred ceeeeecC--CC--------Ccceeeeccc--ccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCC
Confidence 97665511 10 1124677775 222222222 13445577899999999988776554
Q ss_pred cCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEE
Q 002209 478 TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVI 525 (953)
Q Consensus 478 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~ 525 (953)
.|.++|.+++ +.......+...+.. ....+.|+|+|..++
T Consensus 312 ----~v~vWd~~~g--~~~~~l~gH~~~v~~--~~~~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 312 ----KLRFWDVKTK--ERITTLNMHCDDIEI--EEDILAVDEHGDSLA 351 (393)
T ss_dssp ----EEEEEETTTT--EEEEEEECCGGGCSS--GGGCCCBCTTSCBCS
T ss_pred ----EEEEEECCCC--CEEEEECCcCCcccC--CccEEEECCCCCEEE
Confidence 4555566665 334444444433321 112256899997654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=7.1e-07 Score=91.76 Aligned_cols=157 Identities=11% Similarity=0.063 Sum_probs=85.0
Q ss_pred eEEEEEc-CCceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCcc
Q 002209 315 QLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIA 393 (953)
Q Consensus 315 ~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~ 393 (953)
.+..++. +++....... .....+++|+++.+++...+. +.+.+|++...........+
T Consensus 102 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~------------~~v~~~~~~~~~~~~~~~~~-------- 160 (287)
T d1pgua2 102 DLLILQSFTGDIIKSVRL-NSPGSAVSLSQNYVAVGLEEG------------NTIQVFKLSDLEVSFDLKTP-------- 160 (287)
T ss_dssp EEEEEETTTCCEEEEEEC-SSCEEEEEECSSEEEEEETTT------------SCEEEEETTEEEEEEECSSC--------
T ss_pred cceeeeccceeeeeeccc-cceeeeeeccCcceeeecccc------------ceeeeeeccccceeeeeeec--------
Confidence 4556666 5543222111 122346788999988877332 25888988644332211111
Q ss_pred ccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE--EeecccccCCeeeccCCc---
Q 002209 394 FNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI--LHKLDLRYGGISWCDDSL--- 468 (953)
Q Consensus 394 ~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~--l~~~~~~~~~~~~SpDg~--- 468 (953)
....+..++|+|||+.++.. +..+.+.+|++ ..+.... +..+...+..++|+|+++
T Consensus 161 ---~~~~v~~~~~s~~~~~l~~g-------------~~dg~i~i~d~---~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 221 (287)
T d1pgua2 161 ---LRAKPSYISISPSETYIAAG-------------DVMGKILLYDL---QSREVKTSRWAFRTSKINAISWKPAEKGAN 221 (287)
T ss_dssp ---CSSCEEEEEECTTSSEEEEE-------------ETTSCEEEEET---TTTEEEECCSCCCSSCEEEEEECCCC----
T ss_pred ---cCCceeEEEeccCccccccc-------------cccccccceee---cccccccccccccccccceeeecccccccc
Confidence 11234678999999877655 44567889986 3222211 223345566788887654
Q ss_pred -------eEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCC
Q 002209 469 -------ALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGT 522 (953)
Q Consensus 469 -------~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~ 522 (953)
.|+..+.+. .++++++..+ .+.......+...+.. +.|+||++
T Consensus 222 ~~~~~~~~l~sgs~D~----~i~iw~~~~~-~~~~~~~~~h~~~V~~------v~~~~~~~ 271 (287)
T d1pgua2 222 EEEIEEDLVATGSLDT----NIFIYSVKRP-MKIIKALNAHKDGVNN------LLWETPST 271 (287)
T ss_dssp --CCSCCEEEEEETTS----CEEEEESSCT-TCCEEETTSSTTCEEE------EEEEETTE
T ss_pred cccCCCCeeEeecCCC----eEEEEECCCC-CeEEEEeCCCCCCeEE------EEECCCCE
Confidence 455443332 3555565543 2333333444444443 78899875
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.45 E-value=3.6e-06 Score=90.99 Aligned_cols=133 Identities=8% Similarity=-0.084 Sum_probs=81.3
Q ss_pred ceEEEEEc-CCceeE-------eCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEecc
Q 002209 314 TQLVLVSL-DGTVKE-------IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCD 383 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~-------l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~ 383 (953)
+.|.++|+ +++... +... ..+..++|||||++|+..+.+.. ...|.+||++.+. ...+..
T Consensus 205 g~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t----------~~~i~lwd~~~g~~~~~l~~ 274 (393)
T d1sq9a_ 205 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS----------FGCITLYETEFGERIGSLSV 274 (393)
T ss_dssp SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT----------EEEEEEEETTTCCEEEEECB
T ss_pred CcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCC----------cceeeecccccceeeeeecc
Confidence 45667777 664321 1122 56788999999999998875531 1258899998544 444443
Q ss_pred CCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccC----
Q 002209 384 LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYG---- 459 (953)
Q Consensus 384 ~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~---- 459 (953)
............++...+..++|+|||+.|+-. +....|.+||+ .+|.....+..+...+.
T Consensus 275 ~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~-------------s~D~~v~vWd~--~~g~~~~~l~gH~~~v~~~~~ 339 (393)
T d1sq9a_ 275 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA-------------GWDGKLRFWDV--KTKERITTLNMHCDDIEIEED 339 (393)
T ss_dssp C--------CCBSBSSCEEEEEECSSSSEEEEE-------------ETTSEEEEEET--TTTEEEEEEECCGGGCSSGGG
T ss_pred ccccccceeeeecccCceeeeccCCCCCeeEEE-------------CCCCEEEEEEC--CCCCEEEEECCcCCcccCCcc
Confidence 322222222333555667889999999876544 45678999997 33333334555544443
Q ss_pred CeeeccCCceEE
Q 002209 460 GISWCDDSLALV 471 (953)
Q Consensus 460 ~~~~SpDg~~l~ 471 (953)
.+.|+++|..++
T Consensus 340 ~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 340 ILAVDEHGDSLA 351 (393)
T ss_dssp CCCBCTTSCBCS
T ss_pred EEEECCCCCEEE
Confidence 478999998765
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.44 E-value=1.7e-05 Score=82.04 Aligned_cols=136 Identities=16% Similarity=0.024 Sum_probs=74.6
Q ss_pred cceEEEEEcCCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC--ceEEEeccCCCccc
Q 002209 313 TTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVRELCDLPLAED 389 (953)
Q Consensus 313 ~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g--~~~~~l~~~~~~~~ 389 (953)
..+||+++.+|+.+.+... .....++|+|||+.++..... ..+++++..+ +....+...+..
T Consensus 48 ~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-- 112 (302)
T d2p4oa1 48 VGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNA-------------DSIPVVSLVKSDGTVETLLTLPDA-- 112 (302)
T ss_dssp TTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECT-------------TSCEEEEEECTTSCEEEEEECTTC--
T ss_pred CCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCC-------------ceEEEEEecccccceeeccccCCc--
Confidence 3578899887766665544 777889999999855444322 2566666653 333344332211
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc-cc--------cCC
Q 002209 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LR--------YGG 460 (953)
Q Consensus 390 ~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~-~~--------~~~ 460 (953)
.....+.+.+||+ +|..+ .....++.++. .++......... .. ...
T Consensus 113 ---------~~~n~i~~~~~g~--~~v~~-----------~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T d2p4oa1 113 ---------IFLNGITPLSDTQ--YLTAD-----------SYRGAIWLIDV---VQPSGSIWLEHPMLARSNSESVFPAA 167 (302)
T ss_dssp ---------SCEEEEEESSSSE--EEEEE-----------TTTTEEEEEET---TTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred ---------cccceeEEccCCC--EEeec-----------cccccceeeec---cCCcceeEecCCccceeeccCccccc
Confidence 1224578889885 33321 33457777774 333322221111 00 011
Q ss_pred eeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 461 ISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 461 ~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
...+.|+..+++..... .++|.++.+..
T Consensus 168 ngi~~~~~~l~~~~~~~---~~i~~~~~~~~ 195 (302)
T d2p4oa1 168 NGLKRFGNFLYVSNTEK---MLLLRIPVDST 195 (302)
T ss_dssp EEEEEETTEEEEEETTT---TEEEEEEBCTT
T ss_pred ccccccCCceeeecCCC---CeEEecccccc
Confidence 12345677777765433 37888887664
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.43 E-value=1.4e-07 Score=107.03 Aligned_cols=131 Identities=21% Similarity=0.264 Sum_probs=85.4
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHH-HHcCcEEEEcCCCC-CCCCCCh
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW-LARGFAILGGPTTP-IIGEGDE 729 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~G~~V~~~~~~~-~~G~G~~ 729 (953)
|+..+|.|.+...++ ++|||||+|||.+..+.. ..+.... .....+ +..+++||.++||- ..|+-..
T Consensus 106 L~LnI~~P~~~~~~~--~lPV~V~ihGG~f~~G~~--------~~~~~~~-~~~~~~~~~~~vIvVt~nYRlg~~Gfl~~ 174 (544)
T d1thga_ 106 LYLNVFRPAGTKPDA--KLPVMVWIYGGAFVYGSS--------AAYPGNS-YVKESINMGQPVVFVSINYRTGPFGFLGG 174 (544)
T ss_dssp CEEEEEEETTCCTTC--CEEEEEEECCCTTCCSGG--------GGCCSHH-HHHHHHHTTCCCEEEEECCCCHHHHHCCS
T ss_pred CEEEEEECCCCCCCC--CCCEEEEeccCCCccCCC--------ccCCcch-hhhhhhhccCCeEEEecccccccccccCC
Confidence 666788897655444 599999999986543321 1111101 111223 45789999988752 1222111
Q ss_pred --hhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--------CCcccEEEEcccC
Q 002209 730 --EANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--------PHLFCCGIARSGA 793 (953)
Q Consensus 730 --~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~~~ 793 (953)
......+...+.|++.|++|+.++ -.-|+++|-|+|+|.||..+..++... ..+|+.+|+.+|.
T Consensus 175 ~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~ 251 (544)
T d1thga_ 175 DAITAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp HHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred chhhccccccHHHHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhccccccccc
Confidence 011112355789999999999875 236899999999999999888776532 1389999999974
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=1.4e-07 Score=107.20 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=86.5
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC-CCCCChh
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI-IGEGDEE 730 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~-~G~G~~~ 730 (953)
|+..+|.|.+... +.++||+||+|||.+..+ +...+. + ....+.++.+||.++||-. .|+-...
T Consensus 97 L~LnI~~P~~~~~--~~~lPV~v~ihGG~~~~g--------s~~~~~--~---~~~~~~~~vIvVt~nYRLg~~GFl~~~ 161 (532)
T d2h7ca1 97 LYLNIYTPADLTK--KNRLPVMVWIHGGGLMVG--------AASTYD--G---LALAAHENVVVVTIQYRLGIWGFFSTG 161 (532)
T ss_dssp CEEEEEECSCTTS--CCCEEEEEEECCSTTTSC--------CSTTSC--C---HHHHHHHTCEEEEECCCCHHHHHCCCS
T ss_pred CEEEEEECCCCCC--CCCcEEEEEEeCCccccc--------ccccCC--c---hhhhhcCceEEEEEeeccCCCcccccc
Confidence 5667788975433 335999999999865432 222221 1 2345788999999888632 2221110
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh--CCCcccEEEEcccCC
Q 002209 731 ANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAY 794 (953)
Q Consensus 731 ~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~ 794 (953)
.....+...+.|++.|++|+.++ -.-|+++|-|+|+|.||..+..++.. ...+|+.+|+.+|..
T Consensus 162 ~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~ 230 (532)
T d2h7ca1 162 DEHSRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVA 230 (532)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCT
T ss_pred ccccccccccHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhcccc
Confidence 11111235689999999999875 23689999999999999999887763 225899999999753
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.43 E-value=1e-07 Score=108.12 Aligned_cols=132 Identities=20% Similarity=0.274 Sum_probs=84.9
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC-CCCCChh
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI-IGEGDEE 730 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~-~G~G~~~ 730 (953)
|+..+|.|+.....+ ++|||||+|||.+..+.. ..+..........++.++++||.++||-. .|+-...
T Consensus 98 L~LnI~~P~~~~~~~--~~PVlv~ihGG~f~~g~~--------~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~ 167 (534)
T d1llfa_ 98 LTINVVRPPGTKAGA--NLPVMLWIFGGGFEIGSP--------TIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGD 167 (534)
T ss_dssp CEEEEEECTTCCTTC--CEEEEEEECCSTTTSCCG--------GGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSH
T ss_pred CEEEEEECCCCCCCC--CCeEEEEECCCccccCCC--------CCCCchhccchhhhccCCeEEEEeecCCCcccccCCc
Confidence 667788897644433 599999999986543321 11211111111234568999999888621 2221110
Q ss_pred --hhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh-----CC---CcccEEEEcccC
Q 002209 731 --ANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH-----AP---HLFCCGIARSGA 793 (953)
Q Consensus 731 --~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~-----~p---~~~~a~v~~~~~ 793 (953)
.....+...+.|++.|++|+.++ -.-|+++|.|+|+|.||..+...+.. .| .+|+.+|+.+|.
T Consensus 168 ~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs 243 (534)
T d1llfa_ 168 DIKAEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp HHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred ccccccccccchhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCc
Confidence 11112345688999999999885 23699999999999999988766642 11 269999999974
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.38 E-value=3.3e-05 Score=80.45 Aligned_cols=145 Identities=10% Similarity=0.034 Sum_probs=83.2
Q ss_pred ceEEEEEc-CCceeE-eCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 314 TQLVLVSL-DGTVKE-IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~-l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
..|++++. +++... +... .....++++|||+.++...... .....+...+..++....+......
T Consensus 61 g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~--- 128 (319)
T d2dg1a1 61 GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDF---------KSTGGIFAATENGDNLQDIIEDLST--- 128 (319)
T ss_dssp CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTS---------SSCCEEEEECTTSCSCEEEECSSSS---
T ss_pred CEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCC---------ccceeEEEEcCCCceeeeeccCCCc---
Confidence 57888888 443333 3333 5567889999998655432110 0122455556666554443322111
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceE
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l 470 (953)
...+..+++.+||+ + |+.+... ........++.++. +++..+.+...-...++++|+|||+.|
T Consensus 129 -------~~~~nd~~~d~~G~-l-~vtd~~~-----~~~~~~g~v~~~~~---dg~~~~~~~~~~~~pnGia~s~dg~~l 191 (319)
T d2dg1a1 129 -------AYCIDDMVFDSKGG-F-YFTDFRG-----YSTNPLGGVYYVSP---DFRTVTPIIQNISVANGIALSTDEKVL 191 (319)
T ss_dssp -------CCCEEEEEECTTSC-E-EEEECCC-----BTTBCCEEEEEECT---TSCCEEEEEEEESSEEEEEECTTSSEE
T ss_pred -------ccCCcceeEEeccc-e-eeccccc-----ccccCcceeEEEec---ccceeEEEeeccceeeeeeeccccceE
Confidence 12234688999996 3 3332211 11123456888874 666666665544445679999999998
Q ss_pred EEEEecccCceEEEEEcCCC
Q 002209 471 VYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~ 490 (953)
+++.... .+||+++++.
T Consensus 192 yvad~~~---~~I~~~d~~~ 208 (319)
T d2dg1a1 192 WVTETTA---NRLHRIALED 208 (319)
T ss_dssp EEEEGGG---TEEEEEEECT
T ss_pred EEecccC---CceEEEEEcC
Confidence 8875433 3788887654
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=0.00021 Score=73.90 Aligned_cols=115 Identities=10% Similarity=-0.001 Sum_probs=63.3
Q ss_pred CCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEE
Q 002209 459 GGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYI 538 (953)
Q Consensus 459 ~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~ 538 (953)
....+++|+..|+..+.++ .+.++++..+ +...........+ ..+++++++|+....+
T Consensus 179 ~~~~~~~~~~~l~s~~~dg----~i~~~d~~~~--~~~~~~~~~~~~v--------~~~~~~~~~l~s~s~d-------- 236 (342)
T d2ovrb2 179 RVYSLQFDGIHVVSGSLDT----SIRVWDVETG--NCIHTLTGHQSLT--------SGMELKDNILVSGNAD-------- 236 (342)
T ss_dssp CEEEEEECSSEEEEEETTS----CEEEEETTTC--CEEEEECCCCSCE--------EEEEEETTEEEEEETT--------
T ss_pred ccccccCCCCEEEEEeCCC----eEEEeecccc--eeeeEecccccce--------eEEecCCCEEEEEcCC--------
Confidence 3456778999888776543 3555566654 2233222222211 3466677777665521
Q ss_pred EEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002209 539 LLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (953)
Q Consensus 539 ~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 618 (953)
..|++||+...+.......... . . .....++++++.++ +.+.. ..+.++++.+
T Consensus 237 -------------~~i~iwd~~~~~~~~~~~~~~~--~--~------~~~~~~~~~~~~~~-s~s~D---g~i~iwd~~t 289 (342)
T d2ovrb2 237 -------------STVKIWDIKTGQCLQTLQGPNK--H--Q------SAVTCLQFNKNFVI-TSSDD---GTVKLWDLKT 289 (342)
T ss_dssp -------------SCEEEEETTTCCEEEEECSTTS--C--S------SCEEEEEECSSEEE-EEETT---SEEEEEETTT
T ss_pred -------------CEEEEEecccccccccccccce--e--e------eceeecccCCCeeE-EEcCC---CEEEEEECCC
Confidence 2499999988776655443221 0 0 00123445566554 33322 4699999988
Q ss_pred CCee
Q 002209 619 KKSC 622 (953)
Q Consensus 619 g~~~ 622 (953)
|+..
T Consensus 290 g~~i 293 (342)
T d2ovrb2 290 GEFI 293 (342)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 8753
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.35 E-value=9.6e-07 Score=90.33 Aligned_cols=79 Identities=18% Similarity=0.083 Sum_probs=56.4
Q ss_pred HHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc
Q 002209 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL 783 (953)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~ 783 (953)
....|.++||.|+.++. .|+|..+. ..+++.+.++.+.+.. ..+++.++||||||.++..++.++|++
T Consensus 31 i~~~L~~~G~~v~~~~~---~~~~~~~~-------~a~~l~~~i~~~~~~~--g~~~v~ligHS~GG~~~r~~~~~~p~~ 98 (285)
T d1ex9a_ 31 IPSALRRDGAQVYVTEV---SQLDTSEV-------RGEQLLQQVEEIVALS--GQPKVNLIGHSHGGPTIRYVAAVRPDL 98 (285)
T ss_dssp HHHHHHHTTCCEEEECC---CSSSCHHH-------HHHHHHHHHHHHHHHH--CCSCEEEEEETTHHHHHHHHHHHCGGG
T ss_pred HHHHHHhCCCEEEEeCC---CCCCCcHH-------HHHHHHHHHHHHHHHc--CCCeEEEEEECccHHHHHHHHHHCCcc
Confidence 46678899999999655 45654422 2223333333333321 246899999999999999999999999
Q ss_pred ccEEEEcccCC
Q 002209 784 FCCGIARSGAY 794 (953)
Q Consensus 784 ~~a~v~~~~~~ 794 (953)
++.++.++...
T Consensus 99 v~~lv~i~tPh 109 (285)
T d1ex9a_ 99 IASATSVGAPH 109 (285)
T ss_dssp EEEEEEESCCT
T ss_pred ceeEEEECCCC
Confidence 99999987653
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.32 E-value=3.2e-07 Score=102.58 Aligned_cols=128 Identities=23% Similarity=0.189 Sum_probs=84.4
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC-CCCCCC-h
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP-IIGEGD-E 729 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~-~~G~G~-~ 729 (953)
|+..+|.|.. ++ +++||+||+|||.+..+.. ..... ......++.+++||.++||- ..|+=. .
T Consensus 82 L~lni~~P~~--~~--~~lPV~v~ihGG~~~~g~~--------~~~~~---~~~~~~~~~~vVvV~~nYRlg~~GFl~~~ 146 (483)
T d1qe3a_ 82 LYVNVFAPDT--PS--QNLPVMVWIHGGAFYLGAG--------SEPLY---DGSKLAAQGEVIVVTLNYRLGPFGFLHLS 146 (483)
T ss_dssp CEEEEEEECS--SC--CSEEEEEEECCSTTTSCCT--------TSGGG---CCHHHHHHHTCEEEEECCCCHHHHSCCCT
T ss_pred CEEEEEECCC--CC--CCCceEEEEeecccccCCc--------ccccc---ccccccccCceEEEeecccccchhhcccc
Confidence 6677888964 22 3499999999986443321 11111 11223455689999988753 122210 0
Q ss_pred h-hhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccCC
Q 002209 730 E-ANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAY 794 (953)
Q Consensus 730 ~-~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~ 794 (953)
. .....+...+.|++.|++|+.+. -.-|+++|.|+|+|.||..+..++... ..+|+.+|+.+|..
T Consensus 147 ~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 217 (483)
T d1qe3a_ 147 SFDEAYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS 217 (483)
T ss_dssp TTCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence 0 01112345689999999999875 236899999999999999988877632 24899999999864
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.31 E-value=4.8e-07 Score=101.97 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=83.7
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCcEEEEcCCCC-CCCCCCh
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTP-IIGEGDE 729 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~-~~G~G~~ 729 (953)
|+..||.|+..... +++||+||+|||.+..+. ...+. + . ...++ ..+++||.++||- ..|+=..
T Consensus 81 L~LnI~~P~~~~~~--~~~PV~v~ihGG~~~~G~--------~~~~~--~-~-~~~~~~~~~vVvVt~nYRlg~~GFl~~ 146 (517)
T d1ukca_ 81 LFINVFKPSTATSQ--SKLPVWLFIQGGGYAENS--------NANYN--G-T-QVIQASDDVIVFVTFNYRVGALGFLAS 146 (517)
T ss_dssp CEEEEEEETTCCTT--CCEEEEEEECCSTTTSCC--------SCSCC--C-H-HHHHHTTSCCEEEEECCCCHHHHHCCC
T ss_pred CEEEEEeCCCCCCC--CCceEEEEEcCCccccCC--------Ccccc--c-h-hhhhhhccccceEEEEecccceeecCc
Confidence 56677888753332 359999999998655432 22222 1 1 12233 4678889877752 1222111
Q ss_pred hhhh--hhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh----CCCcccEEEEcccCCC
Q 002209 730 EAND--RFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH----APHLFCCGIARSGAYN 795 (953)
Q Consensus 730 ~~~~--~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~----~p~~~~a~v~~~~~~d 795 (953)
.... ......+.|++.|++|+.++ -.-|+++|-|+|+|.||..+...+.. ...+|+.+|+.+|...
T Consensus 147 ~~~~~~~~~N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~~ 221 (517)
T d1ukca_ 147 EKVRQNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWP 221 (517)
T ss_dssp HHHHHSSCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCC
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeecccccc
Confidence 1101 11245689999999999885 23689999999999999988765543 2238999999998643
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.29 E-value=6e-07 Score=101.95 Aligned_cols=127 Identities=20% Similarity=0.222 Sum_probs=83.6
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC----CCCCC
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP----IIGEG 727 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~----~~G~G 727 (953)
|+..||.|... .. .++||+||+|||.+..+... ... +.. ....++.+++||.++||- +...+
T Consensus 97 L~LnI~~P~~~-~~--~~lPV~v~ihGG~~~~gs~~--------~~~-~~~--~~~~~~~~vvvVt~nYRlg~~Gfl~~~ 162 (542)
T d2ha2a1 97 LYLNVWTPYPR-PA--SPTPVLIWIYGGGFYSGAAS--------LDV-YDG--RFLAQVEGAVLVSMNYRVGTFGFLALP 162 (542)
T ss_dssp CEEEEEEESSC-CS--SCEEEEEEECCSTTTCCCTT--------SGG-GCT--HHHHHHHCCEEEEECCCCHHHHHCCCT
T ss_pred CEEEEEecCCC-CC--CCCcEEEEEEECccccccCc--------ccc-cCc--hhhhhhccceeEeeeeeccceeeeccc
Confidence 56677888642 22 35999999999865433221 111 111 123346799999988862 21112
Q ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCC--CcccEEEEcccCC
Q 002209 728 DEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAP--HLFCCGIARSGAY 794 (953)
Q Consensus 728 ~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p--~~~~a~v~~~~~~ 794 (953)
.. ....+...+.|++.|++|+.++ -.-|+++|-|+|+|.||..+..++.... .+|..+|+.+|..
T Consensus 163 ~~--~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~ 232 (542)
T d2ha2a1 163 GS--REAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (542)
T ss_dssp TC--SSCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred cc--ccCCCcCCcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecccc
Confidence 11 1112234678999999999875 2368999999999999999988776432 5899999998854
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.27 E-value=3.9e-07 Score=103.27 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=84.2
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC-CCCCCChh
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP-IIGEGDEE 730 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~-~~G~G~~~ 730 (953)
++..+|.|... ..++||+||+|||.+..+..... .+. .....++.+++||.++||- ..|+-...
T Consensus 92 L~LnI~~P~~~----~~~lPV~v~ihGG~~~~g~~~~~---------~~~--~~~~~~~~~vvvVt~nYRlg~~GFl~~~ 156 (532)
T d1ea5a_ 92 LYLNIWVPSPR----PKSTTVMVWIYGGGFYSGSSTLD---------VYN--GKYLAYTEEVVLVSLSYRVGAFGFLALH 156 (532)
T ss_dssp CEEEEEECSSC----CSSEEEEEEECCSTTTCCCTTCG---------GGC--THHHHHHHTCEEEECCCCCHHHHHCCCT
T ss_pred CEEEEEeCCCC----CCCCcEEEEEEcCCcccccCCcc---------ccC--cchhhcccCccEEEEeeccccccccccc
Confidence 55567788641 23499999999986543322111 111 1223567899999988763 12221110
Q ss_pred -hhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccCCC
Q 002209 731 -ANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (953)
Q Consensus 731 -~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~d 795 (953)
.....+...+.|++.|++|+.++ -.-|+++|.|+|+|.||..+..++... ..+|+.+|+.++...
T Consensus 157 ~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~~ 227 (532)
T d1ea5a_ 157 GSQEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN 227 (532)
T ss_dssp TCSSSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred cccCCCCcccchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeeccccc
Confidence 11112234689999999999885 236899999999999999988777632 157999999987643
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.26 E-value=0.00013 Score=75.39 Aligned_cols=235 Identities=12% Similarity=0.135 Sum_probs=122.0
Q ss_pred ceEEEEEc-CCceeEeCCC------CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCC
Q 002209 314 TQLVLVSL-DGTVKEIGPP------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL 386 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~ 386 (953)
++|++++. ++....+..+ +....+.|++||+.|++.... ..+.+++.+++....+.....
T Consensus 46 g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~-------------~~i~~~~~~g~~~~~~~~~~~ 112 (314)
T d1pjxa_ 46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-------------LGLLVVQTDGTFEEIAKKDSE 112 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-------------TEEEEEETTSCEEECCSBCTT
T ss_pred CEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC-------------CeEEEEeCCCcEEEEEecccc
Confidence 57999998 7765554432 234568999999987776522 267888888766544332211
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccC-C---CcccccccCCeEEEEecCCCCCCCceEEeecccccCCee
Q 002209 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG-G---DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGIS 462 (953)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~-~---~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~ 462 (953)
..+. .++..+++.+||+ + |+++.... . .........+.+|.++. +| +...+.......++++
T Consensus 113 --g~~~------~~pndl~~d~~G~-l-yvtd~~~~~~~~~~~~~~~~~~G~v~~~~~---dg-~~~~~~~~~~~pNGi~ 178 (314)
T d1pjxa_ 113 --GRRM------QGCNDCAFDYEGN-L-WITAPAGEVAPADYTRSMQEKFGSIYCFTT---DG-QMIQVDTAFQFPNGIA 178 (314)
T ss_dssp --SCBC------BCCCEEEECTTSC-E-EEEECBCBCTTSCCCBTTSSSCEEEEEECT---TS-CEEEEEEEESSEEEEE
T ss_pred --cccc------CCCcEEEECCCCC-E-EEecCccCcccccccceeccCCceEEEEee---cC-ceeEeeCCcceeeeeE
Confidence 1111 2345688999995 3 44332110 0 00011123457888873 44 4444444433446789
Q ss_pred eccCCc----eEEEEEecccCceEEEEEcCCCCCCCc---EEeecCCCccccCCCCCC-CeEeccCCCEEEEEeeeccCC
Q 002209 463 WCDDSL----ALVYESWYKTRRTRTWVISPGSKDVAP---RILFDRSSEDVYSDPGSP-MMRRTSTGTYVIAKIKKENDE 534 (953)
Q Consensus 463 ~SpDg~----~l~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~p-~~~~SpDG~~l~~~~~~~~~~ 534 (953)
|+||+. .|+++ ..... +||.++++.. ... +.+.+...... +.| -+++..+|+..+...
T Consensus 179 ~~~d~d~~~~~lyv~-d~~~~--~i~~~d~~~~-g~~~~~~~~~~~~~~~~----~~pdGiavD~~GnlyVa~~------ 244 (314)
T d1pjxa_ 179 VRHMNDGRPYQLIVA-ETPTK--KLWSYDIKGP-AKIENKKVWGHIPGTHE----GGADGMDFDEDNNLLVANW------ 244 (314)
T ss_dssp EEECTTSCEEEEEEE-ETTTT--EEEEEEEEET-TEEEEEEEEEECCCCSS----CEEEEEEEBTTCCEEEEEE------
T ss_pred ECCCCCcceeEEEEE-eeccc--ceEEeeccCc-cccceeeEEEEcccccc----ccceeeEEecCCcEEEEEc------
Confidence 999865 45444 33323 7888776542 111 11111111100 000 034444554221111
Q ss_pred CcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEE
Q 002209 535 GTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQ 614 (953)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~ 614 (953)
+ ...|++||.++++.......+.. ...+ .+|.+|+++++++.+. ...|+++
T Consensus 245 ---------~------~g~I~~~dp~~g~~~~~i~~p~~----~~t~-------~afg~d~~~lyVt~~~---~g~i~~~ 295 (314)
T d1pjxa_ 245 ---------G------SSHIEVFGPDGGQPKMRIRCPFE----KPSN-------LHFKPQTKTIFVTEHE---NNAVWKF 295 (314)
T ss_dssp ---------T------TTEEEEECTTCBSCSEEEECSSS----CEEE-------EEECTTSSEEEEEETT---TTEEEEE
T ss_pred ---------C------CCEEEEEeCCCCEEEEEEECCCC----CEEE-------EEEeCCCCEEEEEECC---CCcEEEE
Confidence 1 23589999888776543333221 1122 4688889888776543 2468887
Q ss_pred ECCC
Q 002209 615 SWPD 618 (953)
Q Consensus 615 ~~~~ 618 (953)
++..
T Consensus 296 ~~~~ 299 (314)
T d1pjxa_ 296 EWQR 299 (314)
T ss_dssp ECSS
T ss_pred ECCC
Confidence 7643
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.25 E-value=3.6e-07 Score=104.56 Aligned_cols=135 Identities=17% Similarity=0.107 Sum_probs=82.6
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEEcCCCC-CCCCCCh
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTP-IIGEGDE 729 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~-~~G~G~~ 729 (953)
|+..||.|...... ..++|||||+|||.+..+....... ..........++. .+++||.++||- ..|+-..
T Consensus 81 L~LNI~~P~~~~~~-~~~lPV~V~iHGG~f~~Gs~~~~~~------~~~~~~dg~~la~~~~vIvVt~nYRlg~~GFl~~ 153 (579)
T d2bcea_ 81 LYLNIWVPQGRKEV-SHDLPVMIWIYGGAFLMGASQGANF------LSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLST 153 (579)
T ss_dssp CEEEEEEEECSSSC-CCSEEEEEECCCCSEEEC-------------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCC
T ss_pred CEEEEEECCCCCCC-CCCCcEEEEECCCcccCCCCCCccc------CCccccchhhhhccCCEEEEeecccccccccccc
Confidence 56678888653221 2359999999998654332211100 0000000124454 569999988752 1221111
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh--CCCcccEEEEcccC
Q 002209 730 EANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGA 793 (953)
Q Consensus 730 ~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~ 793 (953)
......+...+.|++.|++|+.++ -.-|+++|-|+|+|.||..+..++.. ...+|+.+|+.+|.
T Consensus 154 ~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs 222 (579)
T d2bcea_ 154 GDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp SSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred cccCCCccchhhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCC
Confidence 011112345689999999999875 23689999999999999998877653 23589999999975
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=2.2e-06 Score=87.33 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=43.1
Q ss_pred CcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcc
Q 002209 712 GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (953)
Q Consensus 712 G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (953)
++.|+.+ +..|+|.+. ..+..+.|...++..+ ...+++.|+||||||.+|+.+|.++|+++..++.+.
T Consensus 49 ~~~v~~~---d~~g~~~~~----~~~~~a~~~~~~~~~~-----~~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l~ 116 (286)
T d1xkta_ 49 SIPTYGL---QCTRAAPLD----SIHSLAAYYIDCIRQV-----QPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHN 116 (286)
T ss_dssp SSCEEEE---CCCTTSCCS----CHHHHHHHHHHHHHHH-----CCSSCCEEEEETHHHHHHHHHHHHHHHC------CC
T ss_pred CCeEEEE---eCCCCCCCC----CHHHHHHHHHHHHHHh-----cCCCceEEeecCCccHHHHHHHHHHHHcCCCceeEE
Confidence 7888884 445666653 2344455555444332 234689999999999999999999998877766554
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=98.19 E-value=6.8e-06 Score=82.67 Aligned_cols=165 Identities=19% Similarity=0.095 Sum_probs=90.9
Q ss_pred cCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCcccEE
Q 002209 711 RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFCCG 787 (953)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~---p~~~~a~ 787 (953)
..+.|+..+. .|++.+.......+.+++++.+.| .+. ....++.|+||||||.+|..+|.+. ...+..+
T Consensus 69 ~~~~V~al~~---pG~~~~e~~~~s~~~~a~~~~~~i---~~~--~~~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~l 140 (255)
T d1mo2a_ 69 GIAPVRAVPQ---PGYEEGEPLPSSMAAVAAVQADAV---IRT--QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGV 140 (255)
T ss_dssp TTCCEEEECC---TTSSTTCCEESSHHHHHHHHHHHH---HHT--TSSSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEE
T ss_pred CCceEEEEeC---CCcCCCCCCCCCHHHHHHHHHHHH---HHh--CCCCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEE
Confidence 3578888444 455554333333455555554443 332 1235799999999999999998754 3457788
Q ss_pred EEcccCCCCCCC----------CcCc----ccccc----hhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchH
Q 002209 788 IARSGAYNRTLT----------PFGF----QNEDR----TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTM 849 (953)
Q Consensus 788 v~~~~~~d~~~~----------~~~~----~~~~~----~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~ 849 (953)
+++.+..-.... .... ..... ......+.+..+. ...+.+|++++.+.+|.... ..
T Consensus 141 vlld~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~----~~~~~~p~l~v~a~~~~~~~--~~ 214 (255)
T d1mo2a_ 141 VLIDVYPPGHQDAMNAWLEELTATLFDRETVRMDDTRLTALGAYDRLTGQWR----PRETGLPTLLVSAGEPMGPW--PD 214 (255)
T ss_dssp EEEECSCSSHHHHHHHHHHHHHTTCC----CCCCHHHHHHHHHHHHHHHHCC----CCCCCCCEEEEECCSSSSCC--TT
T ss_pred EEECCCCCCCccchhhHHHHHHHHhhccccccCCHHHHHHHHHHHHHHhcCC----CccccceEEEeecCCCCCcc--hh
Confidence 877653210000 0000 00000 0011112223333 24578999999998775432 22
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 850 QSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 850 ~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
. .+. ......++++.+|| +|...-.+....+.+.|.+||.
T Consensus 215 ~--~w~---~~~~~~~~~~~v~G-~H~~ml~~~~~~~A~~i~~~L~ 254 (255)
T d1mo2a_ 215 D--SWK---PTWPFEHDTVAVPG-DHFTMVQEHADAIARHIDAWLG 254 (255)
T ss_dssp C--CCC---CCCCSSCEEEECCS-CCSSCSSCCHHHHHHHHHHHHT
T ss_pred h--HHH---HhCCCCcEEEEECC-CCcccccccHHHHHHHHHHHhC
Confidence 1 111 11234578889997 8863224566777788888874
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.19 E-value=1.3e-06 Score=75.70 Aligned_cols=98 Identities=17% Similarity=0.097 Sum_probs=65.1
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
|-..+|.+++....- .-|.||++||.. ..|. ...+++|.|++ .|.
T Consensus 5 ~~~~~G~~l~y~~~G----------~G~pvlllHG~~--------------~~w~--------~~L~~~yrvi~---~Dl 49 (122)
T d2dsta1 5 YLHLYGLNLVFDRVG----------KGPPVLLVAEEA--------------SRWP--------EALPEGYAFYL---LDL 49 (122)
T ss_dssp EEEETTEEEEEEEEC----------CSSEEEEESSSG--------------GGCC--------SCCCTTSEEEE---ECC
T ss_pred EEEECCEEEEEEEEc----------CCCcEEEEeccc--------------cccc--------ccccCCeEEEE---Eec
Confidence 344578888766642 246788899831 0111 11457999999 455
Q ss_pred CCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 724 IGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 724 ~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
+|+|.+..+....+...+|+.+.++.| +-++..|+||||||.+++.+++..+.
T Consensus 50 pG~G~S~~p~~s~~~~a~~i~~ll~~L------~i~~~~viG~S~Gg~ia~~laa~~~~ 102 (122)
T d2dsta1 50 PGYGRTEGPRMAPEELAHFVAGFAVMM------NLGAPWVLLRGLGLALGPHLEALGLR 102 (122)
T ss_dssp TTSTTCCCCCCCHHHHHHHHHHHHHHT------TCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred cccCCCCCcccccchhHHHHHHHHHHh------CCCCcEEEEeCccHHHHHHHHhhccc
Confidence 688888654444555666665555543 23578999999999999999987643
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.18 E-value=1.6e-06 Score=98.98 Aligned_cols=117 Identities=19% Similarity=0.129 Sum_probs=77.1
Q ss_pred CCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCcEEEEcCCCC-CCCCC---C---hh-hhhhhHH
Q 002209 667 DGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTP-IIGEG---D---EE-ANDRFVE 737 (953)
Q Consensus 667 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~-~~G~G---~---~~-~~~~~~~ 737 (953)
.+++||+||+|||.+..+... ... +. ...++ +...+||.++||- ..|+= . +. .....+.
T Consensus 136 ~~~lPV~V~ihGG~f~~Gs~~--------~~~-~~---~~~l~~~~~vVvVtinYRlg~fGFl~~~~~~~~~~~~~~~gN 203 (571)
T d1dx4a_ 136 TNGLPILIWIYGGGFMTGSAT--------LDI-YN---ADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGN 203 (571)
T ss_dssp CSSEEEEEEECCSTTTCCCTT--------CGG-GC---CHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSC
T ss_pred CCCCeEEEEEeCCCccCCCCc--------ccc-cc---hhhhhhcCCeeEEeecceeccccccccccccccccccCCCCc
Confidence 346999999999865433221 111 11 12344 4568889877752 22321 0 00 1111235
Q ss_pred HHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCC--CcccEEEEcccCCC
Q 002209 738 QLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAP--HLFCCGIARSGAYN 795 (953)
Q Consensus 738 ~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p--~~~~a~v~~~~~~d 795 (953)
..+.|++.|++|+.++ -.-|+++|-|+|+|.||..+..++.... .+|+.+|+.++...
T Consensus 204 ~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 204 VGLWDQALAIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHHHHHHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred ccchHHHHHHHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 6789999999999886 2368999999999999999987776432 47999999988643
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.16 E-value=0.00017 Score=73.89 Aligned_cols=225 Identities=9% Similarity=0.043 Sum_probs=131.7
Q ss_pred cceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002209 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (953)
Q Consensus 192 ~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~ 271 (953)
..|.|.++...|+|+-- ....|+.+|+++++.+.. ..+.. +..+++.+||+.++..
T Consensus 21 Egp~wd~~~~~l~wvDi--------~~~~I~r~d~~~g~~~~~-~~~~~-----~~~i~~~~dg~l~va~---------- 76 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNI--------LERELHELHLASGRKTVH-ALPFM-----GSALAKISDSKQLIAS---------- 76 (295)
T ss_dssp EEEEEETTTTEEEEEEG--------GGTEEEEEETTTTEEEEE-ECSSC-----EEEEEEEETTEEEEEE----------
T ss_pred eCCeEECCCCEEEEEEC--------CCCEEEEEECCCCeEEEE-ECCCC-----cEEEEEecCCCEEEEE----------
Confidence 35999998888998632 367899999999876543 22332 5578888999877744
Q ss_pred CCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC------CcccccccCCCCc
Q 002209 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP------AVYTSLDPSPDEK 344 (953)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~------~~~~~~~~SpDG~ 344 (953)
...|+++|. +|+.+.+... .......+.|+|+
T Consensus 77 -----------------------------------------~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~ 115 (295)
T d2ghsa1 77 -----------------------------------------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA 115 (295)
T ss_dssp -----------------------------------------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC
T ss_pred -----------------------------------------eCccEEeecccceeeEEeeeecCCCcccceeeEECCCCC
Confidence 135888898 8887776432 2346778999997
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
. .+....... ....-.++.+..+..+.+...- .....+.|++|++.+++. +
T Consensus 116 i-w~~~~~~~~--------~~~~g~l~~~~~g~~~~~~~~~-------------~~~Ng~~~s~d~~~l~~~-d------ 166 (295)
T d2ghsa1 116 L-WIGTMGRKA--------ETGAGSIYHVAKGKVTKLFADI-------------SIPNSICFSPDGTTGYFV-D------ 166 (295)
T ss_dssp E-EEEEEETTC--------CTTCEEEEEEETTEEEEEEEEE-------------SSEEEEEECTTSCEEEEE-E------
T ss_pred E-EEEeccccc--------cccceeEeeecCCcEEEEeecc-------------CCcceeeecCCCceEEEe-e------
Confidence 4 444433211 1123345555555555443311 112368999999976665 1
Q ss_pred cccccccCCeEEEEecCCCCC---CCceEEee---cccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEe
Q 002209 425 AKVEVTPRDIIYTQQAEPVQG---EGPEILHK---LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g---~~~~~l~~---~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 498 (953)
+..+.|+.++++...+ ++...... ..+...++....+|. |+++.+.. . +|+++++++. ....
T Consensus 167 -----t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~-g--~V~~~dp~G~---~~~~ 234 (295)
T d2ghsa1 167 -----TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGE-G--AVDRYDTDGN---HIAR 234 (295)
T ss_dssp -----TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETT-T--EEEEECTTCC---EEEE
T ss_pred -----cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeCC-C--ceEEecCCCc---EeeE
Confidence 3355788887632211 12222222 233345677888886 44444443 2 7999998763 3333
Q ss_pred ecCCCccccCCCCCCCeEe-ccCCCEEEEEe
Q 002209 499 FDRSSEDVYSDPGSPMMRR-TSTGTYVIAKI 528 (953)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~-SpDG~~l~~~~ 528 (953)
...+.....+ ++| -+|++.|+...
T Consensus 235 i~lP~~~~T~------~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 235 YEVPGKQTTC------PAFIGPDASRLLVTS 259 (295)
T ss_dssp EECSCSBEEE------EEEESTTSCEEEEEE
T ss_pred ecCCCCceEE------EEEeCCCCCEEEEEE
Confidence 3333222211 445 36777776654
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=2.1e-06 Score=96.94 Aligned_cols=128 Identities=17% Similarity=0.178 Sum_probs=83.1
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC-CCCCCh-
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI-IGEGDE- 729 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~-~G~G~~- 729 (953)
|+..+|.|.. .. +++||+||+|||.+..+... ... +.. ....++.+++||.++||-. .|+-..
T Consensus 90 L~lnI~~P~~--~~--~~~PV~v~ihGG~~~~gs~~--------~~~-~~~--~~~~~~~~vVvVt~nYRlg~~Gfl~~~ 154 (526)
T d1p0ia_ 90 LYLNVWIPAP--KP--KNATVLIWIYGGGFQTGTSS--------LHV-YDG--KFLARVERVIVVSMNYRVGALGFLALP 154 (526)
T ss_dssp CEEEEEEESS--CC--SSEEEEEEECCSTTTSCCTT--------CGG-GCT--HHHHHHHCCEEEEECCCCHHHHHCCCT
T ss_pred CEEEEEeCCC--CC--CCCceEEEEECCCcccccCc--------ccc-cCc--cccccccceeEEecccccccccccCCC
Confidence 5667788864 22 24899999999865543221 111 111 1223467999999887631 221110
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccCC
Q 002209 730 EANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAY 794 (953)
Q Consensus 730 ~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~ 794 (953)
......+...+.|++.|++|+.++ -.-|+++|-|+|+|.||..+..++... ..+|+.+|+.++..
T Consensus 155 ~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~ 224 (526)
T d1p0ia_ 155 GNPEAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 224 (526)
T ss_dssp TCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred CcccccccccccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhcccccc
Confidence 011112345789999999999875 236899999999999999987766532 24799999988754
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.12 E-value=0.00024 Score=72.60 Aligned_cols=231 Identities=12% Similarity=0.047 Sum_probs=132.9
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002209 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (953)
Q Consensus 113 ~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~ 192 (953)
.|.|.++...|.|+--. . +.|+.+|..+ ++.+.+ .++ ..+.
T Consensus 22 gp~wd~~~~~l~wvDi~--------------------------~------~~I~r~d~~~----g~~~~~-~~~--~~~~ 62 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNIL--------------------------E------RELHELHLAS----GRKTVH-ALP--FMGS 62 (295)
T ss_dssp EEEEETTTTEEEEEEGG--------------------------G------TEEEEEETTT----TEEEEE-ECS--SCEE
T ss_pred CCeEECCCCEEEEEECC--------------------------C------CEEEEEECCC----CeEEEE-ECC--CCcE
Confidence 57889888888876532 1 2567777633 333322 234 3466
Q ss_pred ceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002209 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (953)
Q Consensus 193 ~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 272 (953)
...+.+||+.++- . ...|+++|.++|+.+.+..................|+|++. ++.....
T Consensus 63 ~i~~~~dg~l~va-~----------~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw-~~~~~~~------ 124 (295)
T d2ghsa1 63 ALAKISDSKQLIA-S----------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALW-IGTMGRK------ 124 (295)
T ss_dssp EEEEEETTEEEEE-E----------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEE-EEEEETT------
T ss_pred EEEEecCCCEEEE-E----------eCccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEE-EEecccc------
Confidence 7888889865553 2 34699999999988877654332111124567788999744 4411100
Q ss_pred CCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccCCCCcEEEEEEe
Q 002209 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISSI 351 (953)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~ 351 (953)
... ....+|+++ +|+.+.+... .....++||||++.+.++..
T Consensus 125 -----------------------------~~~-------~~g~l~~~~-~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt 167 (295)
T d2ghsa1 125 -----------------------------AET-------GAGSIYHVA-KGKVTKLFADISIPNSICFSPDGTTGYFVDT 167 (295)
T ss_dssp -----------------------------CCT-------TCEEEEEEE-TTEEEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred -----------------------------ccc-------cceeEeeec-CCcEEEEeeccCCcceeeecCCCceEEEeec
Confidence 000 223444443 6666666554 45567899999999988863
Q ss_pred cCCccccccCCCCCcceEEEeccCce------EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 352 HRPYSFIVPCGRFPRQVGVWTTDGIF------VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~~~d~~g~~------~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
. .+.|+.++++... .......+. ....+..++...||. +|...
T Consensus 168 ~------------~~~I~~~~~d~~~~~~~~~~~~~~~~~~----------~~g~pdG~~vD~~Gn--lWva~------- 216 (295)
T d2ghsa1 168 K------------VNRLMRVPLDARTGLPTGKAEVFIDSTG----------IKGGMDGSVCDAEGH--IWNAR------- 216 (295)
T ss_dssp T------------TCEEEEEEBCTTTCCBSSCCEEEEECTT----------SSSEEEEEEECTTSC--EEEEE-------
T ss_pred c------------cceeeEeeecccccccccceEEEeccCc----------ccccccceEEcCCCC--EEeee-------
Confidence 2 3478888876321 111111111 112334567777775 22211
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccccCCeeec-cCCceEEEEEe
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWC-DDSLALVYESW 475 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~S-pDg~~l~~~~~ 475 (953)
...+.|++++- +|.....+.-+.....+++|- +|.+.|+.++-
T Consensus 217 ----~~~g~V~~~dp---~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 217 ----WGEGAVDRYDT---DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp ----ETTTEEEEECT---TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred ----eCCCceEEecC---CCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence 12447888883 555444454444456778885 78888887653
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.09 E-value=0.0019 Score=58.89 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=89.9
Q ss_pred ceEEEEEcC--CceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCC
Q 002209 314 TQLVLVSLD--GTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (953)
Q Consensus 314 ~~l~~~~~~--g~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p 391 (953)
..|+..++. |+..++..+..++-++..-|++.++|+.... ....+|-++|+..+.|++.|...
T Consensus 82 Hai~~~Nlk~~GEE~~i~spk~vRI~S~~yddk~vvF~Gase------------d~~~LYviegGklrkL~~vPpFs--- 146 (313)
T d2hu7a1 82 HALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATE------------DRVALYALDGGGLRELARLPGFG--- 146 (313)
T ss_dssp EEEEEEETTSTTCEEECTTSCSBEEEEEEECSSCEEEEEECS------------SCEEEEEEETTEEEEEEEESSCE---
T ss_pred eeEEEEccCCCCeeeEecCCceEEEEEeeecCceEEEecccC------------CceEEEEEeCCceeeeccCCCcc---
Confidence 458889984 9999988764444444555999999997542 36889999999999999876321
Q ss_pred ccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEE
Q 002209 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALV 471 (953)
Q Consensus 392 ~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~ 471 (953)
|. =.-.|+.|+=. .... ......++.|+ .+|..+.++..++.++....+++.+.
T Consensus 147 --FV----------tDI~~d~I~G~-g~~~--------g~~~sfF~adl---~SG~lri~tpkeGS~~~ay~~~gnKV-- 200 (313)
T d2hu7a1 147 --FV----------SDIRGDLIAGL-GFFG--------GGRVSLFTSNL---SSGGLRVFDSGEGSFSSASISPGMKV-- 200 (313)
T ss_dssp --EE----------EEEETTEEEEE-EEEE--------TTEEEEEEEET---TTEEEEEECCSSEEEEEEEECTTSCE--
T ss_pred --eE----------EeccCCeEEEE-eeec--------CCcceEEEEec---ccCCEEEecCCCCcccceeEccCcee--
Confidence 11 01113333321 0000 12234777775 67888999999999999999999885
Q ss_pred EEEecccCceEEEEEcCCCC
Q 002209 472 YESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 472 ~~~~~~~~~~~l~~~d~~~~ 491 (953)
.+.....+...+..+|+..+
T Consensus 201 ~sdyEt~gEsywit~D~~s~ 220 (313)
T d2hu7a1 201 TAGLETAREARLVTVDPRDG 220 (313)
T ss_dssp EEEEEESSCEEEEEECTTTC
T ss_pred eeccCCCCceEEEEEecccC
Confidence 33333334456667788775
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=0.0004 Score=69.69 Aligned_cols=71 Identities=20% Similarity=0.112 Sum_probs=45.8
Q ss_pred eecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCcccce
Q 002209 115 SFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFV 194 (953)
Q Consensus 115 ~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~ 194 (953)
.+++||++||..+.+ +.|.|||+.+ + ...+.+.++. ..+...
T Consensus 20 c~~~d~~~l~sgs~D---------------------------------g~i~vWd~~~-~--~~~~~l~~H~--~~V~~v 61 (293)
T d1p22a2 20 CLQYDDQKIVSGLRD---------------------------------NTIKIWDKNT-L--ECKRILTGHT--GSVLCL 61 (293)
T ss_dssp EEECCSSEEEEEESS---------------------------------SCEEEEESSS-C--CEEEEECCCS--SCEEEE
T ss_pred EEEEcCCEEEEEeCC---------------------------------CeEEEEECCC-C--cEEEEEecCC--CCEeee
Confidence 478999999988876 3679999853 2 2233443322 345554
Q ss_pred EeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeec
Q 002209 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL 234 (953)
Q Consensus 195 ~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 234 (953)
++|++.|+... ....+.++++..+.....
T Consensus 62 --~~~~~~l~s~s---------~D~~i~~~~~~~~~~~~~ 90 (293)
T d1p22a2 62 --QYDERVIITGS---------SDSTVRVWDVNTGEMLNT 90 (293)
T ss_dssp --ECCSSEEEEEE---------TTSCEEEEESSSCCEEEE
T ss_pred --ecccceeeccc---------cccccccccccccccccc
Confidence 45788877644 245778888887765443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=0.0069 Score=60.15 Aligned_cols=225 Identities=11% Similarity=0.073 Sum_probs=131.7
Q ss_pred ceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce----EEEeccCCCc
Q 002209 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLA 387 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~----~~~l~~~~~~ 387 (953)
..|.++++ +.....+..+ ..+..++|.+.+++|.++... ...|+..++++.. .+.+.....
T Consensus 10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~------------~~~I~~~~l~~~~~~~~~~~~~~~~~- 76 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------------QRMICSTQLDRAHGVSSYDTVISRDI- 76 (266)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT------------TTEEEEEEC--------CEEEECSSC-
T ss_pred CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECC------------CCEEEEEEecCCCCCcceEEEEeCCC-
Confidence 46888999 5555555444 666778888889988776422 2367777776432 112221110
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec-ccccCCeeeccC
Q 002209 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDD 466 (953)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~-~~~~~~~~~SpD 466 (953)
..+..++..+-++.| ||++. ....|.++++ +|...+.+... ......++..|.
T Consensus 77 -----------~~p~glAvD~~~~~l-Y~~d~-----------~~~~I~v~~~---~g~~~~~~~~~~~~~P~~l~vd~~ 130 (266)
T d1ijqa1 77 -----------QAPDGLAVDWIHSNI-YWTDS-----------VLGTVSVADT---KGVKRKTLFRENGSKPRAIVVDPV 130 (266)
T ss_dssp -----------SCCCEEEEETTTTEE-EEEET-----------TTTEEEEEET---TSSSEEEEEECTTCCEEEEEEETT
T ss_pred -----------CCcceEEEeeccceE-EEEec-----------CCCEEEeEec---CCceEEEEEcCCCCCcceEEEEcc
Confidence 123456666666654 45332 2457888886 66655554333 344567888898
Q ss_pred CceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCC
Q 002209 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGAT 546 (953)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (953)
...|+++.+... .+|++.++++. ....+.........+ +++.+.++.|++...
T Consensus 131 ~g~ly~~~~~~~--~~I~r~~~dGs--~~~~l~~~~~~~p~g------l~iD~~~~~lYw~d~----------------- 183 (266)
T d1ijqa1 131 HGFMYWTDWGTP--AKIKKGGLNGV--DIYSLVTENIQWPNG------ITLDLLSGRLYWVDS----------------- 183 (266)
T ss_dssp TTEEEEEECSSS--CEEEEEETTSC--CEEEEECSSCSCEEE------EEEETTTTEEEEEET-----------------
T ss_pred cCeEEEeccCCC--cceeEeccCCC--ceecccccccceeeE------EEeeccccEEEEecC-----------------
Confidence 888888865433 48999999884 444444332222111 667777888877642
Q ss_pred CCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCe
Q 002209 547 PEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (953)
Q Consensus 547 ~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~ 621 (953)
....|..+|+++...+.+...... ......++.++..++++-.. ...|+.++..+|+.
T Consensus 184 ---~~~~I~~~~~dG~~~~~~~~~~~~-----------~~~p~~lav~~~~ly~td~~---~~~I~~~~~~~g~~ 241 (266)
T d1ijqa1 184 ---KLHSISSIDVNGGNRKTILEDEKR-----------LAHPFSLAVFEDKVFWTDII---NEAIFSANRLTGSD 241 (266)
T ss_dssp ---TTTEEEEEETTSCSCEEEEECTTT-----------TSSEEEEEEETTEEEEEETT---TTEEEEEETTTCCC
T ss_pred ---CcCEEEEEECCCCCEEEEEeCCCc-----------ccccEEEEEECCEEEEEECC---CCeEEEEECCCCcc
Confidence 123588899987766655444321 00112345566777765433 35788888777653
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=0.0066 Score=60.29 Aligned_cols=209 Identities=13% Similarity=-0.007 Sum_probs=125.3
Q ss_pred cceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhh
Q 002209 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (953)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (953)
...|..+++++.+...+...... +..+.|.+.++.|+++-.
T Consensus 9 ~~~I~~~~l~~~~~~~~~~~~~~-----~~~id~d~~~~~lYw~D~---------------------------------- 49 (266)
T d1ijqa1 9 RHEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSDL---------------------------------- 49 (266)
T ss_dssp BSSEEEEETTSCCCEEEECSCSS-----EEEEEEETTTTEEEEEET----------------------------------
T ss_pred CCeEEEEECCCCcceeeeCCCCc-----eEEEEEEeCCCEEEEEEC----------------------------------
Confidence 34689999998877766543221 446778888888887610
Q ss_pred hcCCcchhhhhhhhccceEEEEEcCC-----c-eeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEE
Q 002209 298 LLKDEYDEDLFDYYATTQLVLVSLDG-----T-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (953)
Q Consensus 298 ~~~~~~d~~~~~~~~~~~l~~~~~~g-----~-~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~ 370 (953)
....|++.+++| . ...+... .....+++.+-++.|.++... ...|.+
T Consensus 50 --------------~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~------------~~~I~v 103 (266)
T d1ijqa1 50 --------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSV 103 (266)
T ss_dssp --------------TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEE
T ss_pred --------------CCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecC------------CCEEEe
Confidence 223566666622 1 2223333 455667777778888876522 347999
Q ss_pred EeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE
Q 002209 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (953)
Q Consensus 371 ~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~ 450 (953)
.+++|...+.+..... ..++.++..|... .+||++. +....|+..++ +|...+.
T Consensus 104 ~~~~g~~~~~~~~~~~------------~~P~~l~vd~~~g-~ly~~~~----------~~~~~I~r~~~---dGs~~~~ 157 (266)
T d1ijqa1 104 ADTKGVKRKTLFRENG------------SKPRAIVVDPVHG-FMYWTDW----------GTPAKIKKGGL---NGVDIYS 157 (266)
T ss_dssp EETTSSSEEEEEECTT------------CCEEEEEEETTTT-EEEEEEC----------SSSCEEEEEET---TSCCEEE
T ss_pred EecCCceEEEEEcCCC------------CCcceEEEEcccC-eEEEecc----------CCCcceeEecc---CCCceec
Confidence 9999877665544221 1234677777543 5666442 22347888885 7766666
Q ss_pred Eeec-ccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 451 LHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 451 l~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
+... -....++++.+.+++|++..... ..|+.+++++. ....+....... ..| ...+.++.+|++..
T Consensus 158 l~~~~~~~p~gl~iD~~~~~lYw~d~~~---~~I~~~~~dG~--~~~~~~~~~~~~-----~~p-~~lav~~~~ly~td 225 (266)
T d1ijqa1 158 LVTENIQWPNGITLDLLSGRLYWVDSKL---HSISSIDVNGG--NRKTILEDEKRL-----AHP-FSLAVFEDKVFWTD 225 (266)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTT---TEEEEEETTSC--SCEEEEECTTTT-----SSE-EEEEEETTEEEEEE
T ss_pred ccccccceeeEEEeeccccEEEEecCCc---CEEEEEECCCC--CEEEEEeCCCcc-----ccc-EEEEEECCEEEEEE
Confidence 6543 23456789999999999875332 37999999885 333433222111 112 34555666776664
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.78 E-value=0.0028 Score=63.00 Aligned_cols=115 Identities=10% Similarity=0.003 Sum_probs=61.8
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
.....+++.++|+.++ .... ...+.+++..+.......... ...+..++++++|+
T Consensus 98 ~~p~~iavd~~g~i~v-~d~~------------~~~~~~~~~~~~~~~~~~~~~------------~~~p~~i~~~~~g~ 152 (260)
T d1rwia_ 98 NYPEGLAVDTQGAVYV-ADRG------------NNRVVKLAAGSKTQTVLPFTG------------LNDPDGVAVDNSGN 152 (260)
T ss_dssp CSEEEEEECTTCCEEE-EEGG------------GTEEEEECTTCSSCEECCCCS------------CCSCCEEEECTTCC
T ss_pred eecccccccccceeEe-eccc------------cccccccccccceeeeeeecc------------cCCcceeeecCCCC
Confidence 4456788999997443 3211 124555655554333221111 12345788899986
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe-ecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
+ |+++ .....++.++. ++.....+. ........+++.++|+ |+++.. ... +++.++.++
T Consensus 153 -~-~v~~-----------~~~~~i~~~d~---~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~-~~~--~i~~~~~~~ 212 (260)
T d1rwia_ 153 -V-YVTD-----------TDNNRVVKLEA---ESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEH-NTN--QVVKLLAGS 212 (260)
T ss_dssp -E-EEEE-----------GGGTEEEEECT---TTCCEEECCCSSCCSEEEEEECTTCC-EEEEET-TTT--EEEEECTTC
T ss_pred -E-eeec-----------ccccccccccc---ccceeeeeeccccCCCccceeeeeee-eeeeec-CCC--EEEEEeCCC
Confidence 3 4422 22457888874 444333332 1223345678889986 444433 223 788888776
Q ss_pred C
Q 002209 491 K 491 (953)
Q Consensus 491 ~ 491 (953)
.
T Consensus 213 ~ 213 (260)
T d1rwia_ 213 T 213 (260)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.0019 Score=64.49 Aligned_cols=52 Identities=6% Similarity=0.066 Sum_probs=34.2
Q ss_pred EeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 195 ~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
.+++||++||... .+..|.++|+++++..+........ +..+ ++|++.|+..
T Consensus 20 c~~~d~~~l~sgs---------~Dg~i~vWd~~~~~~~~~l~~H~~~----V~~v--~~~~~~l~s~ 71 (293)
T d1p22a2 20 CLQYDDQKIVSGL---------RDNTIKIWDKNTLECKRILTGHTGS----VLCL--QYDERVIITG 71 (293)
T ss_dssp EEECCSSEEEEEE---------SSSCEEEEESSSCCEEEEECCCSSC----EEEE--ECCSSEEEEE
T ss_pred EEEEcCCEEEEEe---------CCCeEEEEECCCCcEEEEEecCCCC----Eeee--ecccceeecc
Confidence 4678999988754 2567888899888876554433322 4444 4578887765
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.73 E-value=0.0036 Score=62.14 Aligned_cols=227 Identities=11% Similarity=0.080 Sum_probs=129.2
Q ss_pred ccceEEEEEcCCc-eeE------eCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEecc
Q 002209 312 ATTQLVLVSLDGT-VKE------IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD 383 (953)
Q Consensus 312 ~~~~l~~~~~~g~-~~~------l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~ 383 (953)
....|.++++++. ... +..+ ..+..+++.+..++|.++... .+.|+..+++++..+.+..
T Consensus 8 ~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~------------~~~I~~~~l~g~~~~~v~~ 75 (263)
T d1npea_ 8 QTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS------------EPSIGRASLHGGEPTTIIR 75 (263)
T ss_dssp EEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT------------TTEEEEEESSSCCCEEEEC
T ss_pred CCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECC------------CCeEEEEEcccCCcEEEEE
Confidence 3456777887432 211 2112 334556777778888766422 2378888898776665543
Q ss_pred CCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec-ccccCCee
Q 002209 384 LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGIS 462 (953)
Q Consensus 384 ~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~-~~~~~~~~ 462 (953)
... ..+..+++..-+.. +||++. ....|.++++ +|...+.+... ......++
T Consensus 76 ~~~------------~~p~~iAvD~~~~~-lY~~d~-----------~~~~I~~~~~---dg~~~~~l~~~~l~~p~~l~ 128 (263)
T d1npea_ 76 QDL------------GSPEGIALDHLGRT-IFWTDS-----------QLDRIEVAKM---DGTQRRVLFDTGLVNPRGIV 128 (263)
T ss_dssp TTC------------CCEEEEEEETTTTE-EEEEET-----------TTTEEEEEET---TSCSCEEEECSSCSSEEEEE
T ss_pred ecc------------ccccEEEEeccCCe-EEEecc-----------CCCEEEEEec---CCceEEEEecccccCCcEEE
Confidence 221 12235556544554 455332 2457888885 66655555433 24456788
Q ss_pred eccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEec
Q 002209 463 WCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNG 542 (953)
Q Consensus 463 ~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~ 542 (953)
..|....|+++.... ...+|+.+++++. ....+.........+ +++.+.++.|++...
T Consensus 129 vdp~~g~ly~t~~~~-~~~~I~r~~~dG~--~~~~i~~~~~~~P~g------laiD~~~~~lYw~d~------------- 186 (263)
T d1npea_ 129 TDPVRGNLYWTDWNR-DNPKIETSHMDGT--NRRILAQDNLGLPNG------LTFDAFSSQLCWVDA------------- 186 (263)
T ss_dssp EETTTTEEEEEECCS-SSCEEEEEETTSC--CCEEEECTTCSCEEE------EEEETTTTEEEEEET-------------
T ss_pred EecccCcEEEeecCC-CCcEEEEecCCCC--Cceeeeeecccccce------EEEeecCcEEEEEeC-------------
Confidence 999988888876543 2347999999885 334443322221111 566677777776642
Q ss_pred CCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002209 543 NGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (953)
Q Consensus 543 ~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~ 622 (953)
....|...|++++..+.+...-.. ...++.+++.++++-+. ...|+.++..+|+..
T Consensus 187 -------~~~~I~~~~~~g~~~~~v~~~~~~--------------P~~lav~~~~lYwtd~~---~~~I~~~~~~~g~~~ 242 (263)
T d1npea_ 187 -------GTHRAECLNPAQPGRRKVLEGLQY--------------PFAVTSYGKNLYYTDWK---TNSVIAMDLAISKEM 242 (263)
T ss_dssp -------TTTEEEEEETTEEEEEEEEECCCS--------------EEEEEEETTEEEEEETT---TTEEEEEETTTTEEE
T ss_pred -------CCCEEEEEECCCCCeEEEECCCCC--------------cEEEEEECCEEEEEECC---CCEEEEEECCCCccc
Confidence 122478888877666555433211 12334456677665543 336888887777654
Q ss_pred E
Q 002209 623 Q 623 (953)
Q Consensus 623 ~ 623 (953)
.
T Consensus 243 ~ 243 (263)
T d1npea_ 243 D 243 (263)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.63 E-value=0.0057 Score=60.65 Aligned_cols=199 Identities=11% Similarity=0.060 Sum_probs=121.1
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
+....+.+-.++|+++.. ....|+..+++++..+.+....... ...++...-++.|+++.
T Consensus 38 ~~~ld~D~~~~~iywsd~--------~~~~I~~~~l~g~~~~~v~~~~~~~----p~~iAvD~~~~~lY~~d-------- 97 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDI--------SEPSIGRASLHGGEPTTIIRQDLGS----PEGIALDHLGRTIFWTD-------- 97 (263)
T ss_dssp EEEEEEETTTTEEEEEET--------TTTEEEEEESSSCCCEEEECTTCCC----EEEEEEETTTTEEEEEE--------
T ss_pred EEEEEEEeCCCEEEEEEC--------CCCeEEEEEcccCCcEEEEEecccc----ccEEEEeccCCeEEEec--------
Confidence 444667777888877532 3568999999987766654332111 34555554566777661
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCc-eeEe-CCC-CcccccccCCCCcEEE
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEI-GPP-AVYTSLDPSPDEKYIL 347 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~-~~~l-~~~-~~~~~~~~SpDG~~l~ 347 (953)
.....|.+.+++|. .+.+ ... .....+++.|...+|.
T Consensus 98 ----------------------------------------~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly 137 (263)
T d1npea_ 98 ----------------------------------------SQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLY 137 (263)
T ss_dssp ----------------------------------------TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEE
T ss_pred ----------------------------------------cCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEE
Confidence 02346778888553 2333 333 5667888999888888
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
++.... ....|+..+++|+..+.+..... ..+..+++.+.+++ +||++.
T Consensus 138 ~t~~~~----------~~~~I~r~~~dG~~~~~i~~~~~------------~~P~glaiD~~~~~-lYw~d~-------- 186 (263)
T d1npea_ 138 WTDWNR----------DNPKIETSHMDGTNRRILAQDNL------------GLPNGLTFDAFSSQ-LCWVDA-------- 186 (263)
T ss_dssp EEECCS----------SSCEEEEEETTSCCCEEEECTTC------------SCEEEEEEETTTTE-EEEEET--------
T ss_pred EeecCC----------CCcEEEEecCCCCCceeeeeecc------------cccceEEEeecCcE-EEEEeC--------
Confidence 775321 11258888999877666544221 12346788887775 455332
Q ss_pred ccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
..+.|..+++ +|...+.+........++++ ++.+|+++.+.. ..|+.++..++
T Consensus 187 ---~~~~I~~~~~---~g~~~~~v~~~~~~P~~lav--~~~~lYwtd~~~---~~I~~~~~~~g 239 (263)
T d1npea_ 187 ---GTHRAECLNP---AQPGRRKVLEGLQYPFAVTS--YGKNLYYTDWKT---NSVIAMDLAIS 239 (263)
T ss_dssp ---TTTEEEEEET---TEEEEEEEEECCCSEEEEEE--ETTEEEEEETTT---TEEEEEETTTT
T ss_pred ---CCCEEEEEEC---CCCCeEEEECCCCCcEEEEE--ECCEEEEEECCC---CEEEEEECCCC
Confidence 2457888885 66555555433222233444 577888886543 27999998875
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.57 E-value=0.00064 Score=67.42 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=31.0
Q ss_pred CCcEEEEEeChHHHHHHHHHHhCCC-cccEEEEcccCC
Q 002209 758 PSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAY 794 (953)
Q Consensus 758 ~~~i~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~ 794 (953)
.+++-++||||||.++-.++.+.+. .++..|++++..
T Consensus 79 ~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLgsPH 116 (279)
T d1ei9a_ 79 QQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQH 116 (279)
T ss_dssp TTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESCCT
T ss_pred ccceeEEEEccccHHHHHHHHHcCCCCcceEEEECCCC
Confidence 4589999999999999999998874 578888887653
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=97.32 E-value=0.00026 Score=72.14 Aligned_cols=109 Identities=10% Similarity=-0.128 Sum_probs=64.2
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~ 748 (953)
.|++|++||+-.. ....+.......+. ...+.|+.+|.......... .........-..+...++
T Consensus 70 ~pt~iiiHGw~~~-------------~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a~~~Y~-~a~~n~~~Vg~~ia~~i~ 135 (337)
T d1rp1a2 70 KKTRFIIHGFIDK-------------GEENWLLDMCKNMFKVEEVNCICVDWKKGSQTSYT-QAANNVRVVGAQVAQMLS 135 (337)
T ss_dssp SEEEEEECCCCCT-------------TCTTHHHHHHHHHTTTCCEEEEEEECHHHHSSCHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcCC-------------CCcchHHHHHHHHHhcCCceEEEEeeccccCcchH-HHHHHHHHHHHHHHHHHH
Confidence 6999999995211 11111122222333 45699999665211000000 001112233455666777
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
+|.+...++.+++.|+|||+||.+|..++.+. ..+..++...|+
T Consensus 136 ~l~~~~g~~~~~vhlIGhSLGAhvAG~aG~~~-~~l~rItgLDPA 179 (337)
T d1rp1a2 136 MLSANYSYSPSQVQLIGHSLGAHVAGEAGSRT-PGLGRITGLDPV 179 (337)
T ss_dssp HHHHHHCCCGGGEEEEEETHHHHHHHHHHHTS-TTCCEEEEESCC
T ss_pred HHHHhcCCChhheEEEeecHHHhhhHHHHHhh-ccccceeccCCC
Confidence 77766567889999999999999998776655 567666666654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.32 E-value=0.021 Score=56.26 Aligned_cols=132 Identities=8% Similarity=-0.022 Sum_probs=71.9
Q ss_pred ceEEEEEcCC-ceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 314 TQLVLVSLDG-TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 314 ~~l~~~~~~g-~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
..+++++..+ ........ .....++++|+|+ +.++... ...|..++.+++....+.....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~~v~~~~------------~~~i~~~d~~~~~~~~~~~~~~---- 181 (260)
T d1rwia_ 119 NRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTD------------NNRVVKLEAESNNQVVLPFTDI---- 181 (260)
T ss_dssp TEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-EEEEEGG------------GTEEEEECTTTCCEEECCCSSC----
T ss_pred ccccccccccceeeeeeecccCCcceeeecCCCC-Eeeeccc------------cccccccccccceeeeeecccc----
Confidence 3566666633 32222222 4556788999997 4333311 2268888888765444332111
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc-cccCCeeeccCCce
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCDDSLA 469 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~-~~~~~~~~SpDg~~ 469 (953)
..+..+++.+||+ +|+++. ....++.++. ++.....+.... .....+++++||.
T Consensus 182 --------~~p~gi~~d~~g~--l~vsd~-----------~~~~i~~~~~---~~~~~~~~~~~~~~~P~~i~~d~~g~- 236 (260)
T d1rwia_ 182 --------TAPWGIAVDEAGT--VYVTEH-----------NTNQVVKLLA---GSTTSTVLPFTGLNTPLAVAVDSDRT- 236 (260)
T ss_dssp --------CSEEEEEECTTCC--EEEEET-----------TTTEEEEECT---TCSCCEECCCCSCCCEEEEEECTTCC-
T ss_pred --------CCCccceeeeeee--eeeeec-----------CCCEEEEEeC---CCCeEEEEccCCCCCeEEEEEeCCCC-
Confidence 2335688889885 354332 2446777773 443333332221 2345688999986
Q ss_pred EEEEEecccCceEEEEEcCCC
Q 002209 470 LVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~ 490 (953)
|+++.+.+ .+|+.++..+
T Consensus 237 l~vad~~~---~rI~~i~~~~ 254 (260)
T d1rwia_ 237 VYVADRGN---DRVVKLTSLE 254 (260)
T ss_dssp EEEEEGGG---TEEEEECCCG
T ss_pred EEEEECCC---CEEEEEeCCC
Confidence 55543332 2788877544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.19 E-value=0.032 Score=55.57 Aligned_cols=133 Identities=6% Similarity=0.058 Sum_probs=72.5
Q ss_pred ceEEEEEcCCce-eEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 314 TQLVLVSLDGTV-KEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 314 ~~l~~~~~~g~~-~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
..|..++.+|+. ..+... .....+++.++|+.++.... ...+++++.+++..+.+......
T Consensus 93 ~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~-------------~~~~~~~~~~g~~~~~~g~~~~~--- 156 (279)
T d1q7fa_ 93 HQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECK-------------VMRVIIFDQNGNVLHKFGCSKHL--- 156 (279)
T ss_dssp CEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETT-------------TTEEEEECTTSCEEEEEECTTTC---
T ss_pred cccccccccccceeecCCCcccccceeccccCCcEEEEeec-------------cceeeEeccCCceeecccccccc---
Confidence 356666665543 333222 44567788889975554331 23677888887766554322110
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeeccc---ccCCeeeccCC
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL---RYGGISWCDDS 467 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~---~~~~~~~SpDg 467 (953)
.....++..++|+ +|+++. ....|++++. +|.....+ ...+ ...++++.++|
T Consensus 157 --------~~~~~i~~d~~g~--i~v~d~-----------~~~~V~~~d~---~G~~~~~~-g~~g~~~~P~giavD~~G 211 (279)
T d1q7fa_ 157 --------EFPNGVVVNDKQE--IFISDN-----------RAHCVKVFNY---EGQYLRQI-GGEGITNYPIGVGINSNG 211 (279)
T ss_dssp --------SSEEEEEECSSSE--EEEEEG-----------GGTEEEEEET---TCCEEEEE-SCTTTSCSEEEEEECTTC
T ss_pred --------cccceeeecccee--EEeeec-----------cccceeeeec---CCceeeee-cccccccCCcccccccCC
Confidence 1224567777775 344222 2457888884 54333333 2222 23457899999
Q ss_pred ceEEEEEecccCceEEEEEcCCC
Q 002209 468 LALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
+ |+++...+. .+|.+++.++
T Consensus 212 ~-i~Vad~~~~--~~v~~f~~~G 231 (279)
T d1q7fa_ 212 E-ILIADNHNN--FNLTIFTQDG 231 (279)
T ss_dssp C-EEEEECSSS--CEEEEECTTS
T ss_pred e-EEEEECCCC--cEEEEECCCC
Confidence 8 444433332 3677788665
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.13 E-value=0.031 Score=55.64 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=64.4
Q ss_pred ceEEEEEcCCce-eEeCC--C-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCccc
Q 002209 314 TQLVLVSLDGTV-KEIGP--P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAED 389 (953)
Q Consensus 314 ~~l~~~~~~g~~-~~l~~--~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~ 389 (953)
..+++++.+|+. ..+.. . .....+++.++|. |+++... ...|++++.+|.....+... .
T Consensus 135 ~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~------------~~~V~~~d~~G~~~~~~g~~-g--- 197 (279)
T d1q7fa_ 135 MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR------------AHCVKVFNYEGQYLRQIGGE-G--- 197 (279)
T ss_dssp TEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGG------------GTEEEEEETTCCEEEEESCT-T---
T ss_pred ceeeEeccCCceeecccccccccccceeeecccee-EEeeecc------------ccceeeeecCCceeeeeccc-c---
Confidence 345566665532 22221 1 4455677888886 4333321 23788999988776655321 1
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc--cccCCeeeccCC
Q 002209 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--LRYGGISWCDDS 467 (953)
Q Consensus 390 ~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~--~~~~~~~~SpDg 467 (953)
....+..+++.++|+ |++. +. .....|.+++. +|.-...+.... .....++..+||
T Consensus 198 -------~~~~P~giavD~~G~-i~Va-d~----------~~~~~v~~f~~---~G~~~~~~~~~~~~~~p~~vav~~dG 255 (279)
T d1q7fa_ 198 -------ITNYPIGVGINSNGE-ILIA-DN----------HNNFNLTIFTQ---DGQLISALESKVKHAQCFDVALMDDG 255 (279)
T ss_dssp -------TSCSEEEEEECTTCC-EEEE-EC----------SSSCEEEEECT---TSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred -------cccCCcccccccCCe-EEEE-EC----------CCCcEEEEECC---CCCEEEEEeCCCCCCCEeEEEEeCCC
Confidence 112345788999996 4333 21 11235777763 443233332221 234567899999
Q ss_pred ceEEEE
Q 002209 468 LALVYE 473 (953)
Q Consensus 468 ~~l~~~ 473 (953)
+ |+.+
T Consensus 256 ~-l~V~ 260 (279)
T d1q7fa_ 256 S-VVLA 260 (279)
T ss_dssp E-EEEE
T ss_pred c-EEEE
Confidence 6 4444
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.11 E-value=0.00074 Score=68.54 Aligned_cols=110 Identities=11% Similarity=-0.156 Sum_probs=65.7
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~ 748 (953)
.|++|++||.... ....+.......++ ...+.|+.+|............ .......-..+...++
T Consensus 70 ~pt~iiiHG~~~~-------------~~~~~~~~~~~a~l~~~d~NVi~VDW~~~a~~~Y~~a-~~n~~~Vg~~ia~~i~ 135 (338)
T d1bu8a2 70 RKTRFIVHGFIDK-------------GEDGWLLDMCKKMFQVEKVNCICVDWRRGSRTEYTQA-SYNTRVVGAEIAFLVQ 135 (338)
T ss_dssp SEEEEEECCSCCT-------------TCTTHHHHHHHHHHTTCCEEEEEEECHHHHSSCHHHH-HHHHHHHHHHHHHHHH
T ss_pred CceEEEeCcccCC-------------CCcccHHHHHHHHHhcCCceEEEEechhhcccchHHH-HHhHHHHHHHHHHHHH
Confidence 6999999995211 11111222233344 4569999865521100000000 0111223344455666
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
+|.....++.+++.|+|||+|+.+|..++.+.+.++..+....|+
T Consensus 136 ~l~~~~g~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA 180 (338)
T d1bu8a2 136 VLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPA 180 (338)
T ss_dssp HHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred HHHHhcCCCcceeEEEeccHHHHHHHHHHHhhccccccccccccC
Confidence 666555578899999999999999999998887677777777665
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.07 E-value=0.0094 Score=61.48 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=68.4
Q ss_pred cccceEec-----cCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecC
Q 002209 190 KLNFVTWS-----QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (953)
Q Consensus 190 ~~~~~~wS-----PDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 264 (953)
...+|..| +||++|+. . ...+.+|-++|+++-+..+++..+.... ...+...++++..++....
T Consensus 84 D~HHP~~S~TdGtyDGrylFV-N-------Dkan~RVAvIdl~~fkt~kIi~iPn~~~---~HG~r~~~~p~T~YV~~~~ 152 (459)
T d1fwxa2 84 DLHHVHMSFTEGKYDGRFLFM-N-------DKANTRVARVRCDVMKCDAILEIPNAKG---IHGLRPQKWPRSNYVFCNG 152 (459)
T ss_dssp CBCCEEEEEETTEEEEEEEEE-E-------ETTTTEEEEEETTTTEEEEEEECSSCCS---EEEEEECCSSBCSEEEEEE
T ss_pred CcCCCcccccCCccceeEEEE-E-------cCCCceEEEEECcceeeeEEEecCCCCC---CceeecccCCCeEEEEccC
Confidence 34555555 58988765 3 2347899999999999888776665321 3345556666654443111
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCCCcccccccCCC
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPPAVYTSLDPSPD 342 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~~~~~~~~~SpD 342 (953)
..... ..+++... . +... ..+.+..+|. +.+. .++.-++......+|||
T Consensus 153 e~~vP------------~pndg~~l----------~---d~~~----y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~d 203 (459)
T d1fwxa2 153 EDETP------------LVNDGTNM----------E---DVAN----YVNVFTAVDADKWEVAWQVLVSGNLDNCDADYE 203 (459)
T ss_dssp CSCEE------------SSCSSSST----------T---CGG-----EEEEEEEEETTTTEEEEEEEESSCCCCEEECSS
T ss_pred ccccc------------cCCCCccc----------c---chhh----cceEEEEEecCCceEEEEeeeCCChhccccCCC
Confidence 11000 00010000 0 0000 2234567777 5533 33333356678899999
Q ss_pred CcEEEEEEec
Q 002209 343 EKYILISSIH 352 (953)
Q Consensus 343 G~~l~~~~~~ 352 (953)
||++++++..
T Consensus 204 GK~af~TsyN 213 (459)
T d1fwxa2 204 GKWAFSTSYN 213 (459)
T ss_dssp SSEEEEEESC
T ss_pred CCEEEEEecc
Confidence 9999998844
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.13 E-value=0.46 Score=42.99 Aligned_cols=180 Identities=11% Similarity=0.018 Sum_probs=101.1
Q ss_pred CCeEEEEEeeccccCCCCcceEEEEECC-CCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCC
Q 002209 200 GKHLAFSIRIDAEDSSSSKLRVWVADVD-TGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLG 278 (953)
Q Consensus 200 G~~laf~~~~~~~~~~~~~~~l~~~d~~-~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 278 (953)
=..|.|.++ ...+.+...||++++. -|+..++....- +.-+.-.-|++.++|+...
T Consensus 66 ldfi~f~RD---V~kGkE~Hai~~~Nlk~~GEE~~i~spk~------vRI~S~~yddk~vvF~Gas-------------- 122 (313)
T d2hu7a1 66 VGRVILVRD---VSKGAEQHALFKVNTSRPGEEQRLEAVKP------MRILSGVDTGEAVVFTGAT-------------- 122 (313)
T ss_dssp BSEEEEEEE---CSTTSCCEEEEEEETTSTTCEEECTTSCS------BEEEEEEECSSCEEEEEEC--------------
T ss_pred cceEEEEee---hhcCcceeeEEEEccCCCCeeeEecCCce------EEEEEeeecCceEEEeccc--------------
Confidence 357899887 4567788899999987 367777754321 3345555788888887211
Q ss_pred CceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCC---CCcccccccCCCCcEEEEEEecCCc
Q 002209 279 PKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP---PAVYTSLDPSPDEKYILISSIHRPY 355 (953)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~---~~~~~~~~~SpDG~~l~~~~~~~~~ 355 (953)
+ ....||.++ +|+.+.|.. ...++++ .|++|+-...-.+.
T Consensus 123 -----------------------e---------d~~~LYvie-gGklrkL~~vPpFsFVtDI----~~d~I~G~g~~~g~ 165 (313)
T d2hu7a1 123 -----------------------E---------DRVALYALD-GGGLRELARLPGFGFVSDI----RGDLIAGLGFFGGG 165 (313)
T ss_dssp -----------------------S---------SCEEEEEEE-TTEEEEEEEESSCEEEEEE----ETTEEEEEEEEETT
T ss_pred -----------------------C---------CceEEEEEe-CCceeeeccCCCcceEEec----cCCeEEEEeeecCC
Confidence 0 113455444 666666543 2444443 57788755533221
Q ss_pred cccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeE
Q 002209 356 SFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDII 435 (953)
Q Consensus 356 ~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l 435 (953)
+...++.|+..+..+.++...+. +.+...+++.|. +--.+. -+...+
T Consensus 166 ---------~~sfF~adl~SG~lri~tpkeGS-------------~~~ay~~~gnKV-~sdyEt----------~gEsyw 212 (313)
T d2hu7a1 166 ---------RVSLFTSNLSSGGLRVFDSGEGS-------------FSSASISPGMKV-TAGLET----------AREARL 212 (313)
T ss_dssp ---------EEEEEEEETTTEEEEEECCSSEE-------------EEEEEECTTSCE-EEEEEE----------SSCEEE
T ss_pred ---------cceEEEEecccCCEEEecCCCCc-------------ccceeEccCcee-eeccCC----------CCceEE
Confidence 23688889988888888775432 234556676653 111111 112223
Q ss_pred EEEecCCCCCCCceEEeecccccCC-----e---eeccCCceEEEEEe
Q 002209 436 YTQQAEPVQGEGPEILHKLDLRYGG-----I---SWCDDSLALVYESW 475 (953)
Q Consensus 436 ~~~d~~~~~g~~~~~l~~~~~~~~~-----~---~~SpDg~~l~~~~~ 475 (953)
..+|. ..++..++.-+..++.+ + -+.||++.++.+..
T Consensus 213 it~D~---~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakr 257 (313)
T d2hu7a1 213 VTVDP---RDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR 257 (313)
T ss_dssp EEECT---TTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred EEEec---ccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEec
Confidence 34553 44555665444333221 3 36799987665543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.44 E-value=0.11 Score=53.41 Aligned_cols=108 Identities=10% Similarity=0.064 Sum_probs=61.7
Q ss_pred CCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002209 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 341 pDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
+|||+|+..... +..|.++|++.-+..++...|... +...+..++++++.+......
T Consensus 97 yDGrylFVNDka------------n~RVAvIdl~~fkt~kIi~iPn~~-----------~~HG~r~~~~p~T~YV~~~~e 153 (459)
T d1fwxa2 97 YDGRFLFMNDKA------------NTRVARVRCDVMKCDAILEIPNAK-----------GIHGLRPQKWPRSNYVFCNGE 153 (459)
T ss_dssp EEEEEEEEEETT------------TTEEEEEETTTTEEEEEEECSSCC-----------SEEEEEECCSSBCSEEEEEEC
T ss_pred cceeEEEEEcCC------------CceEEEEECcceeeeEEEecCCCC-----------CCceeecccCCCeEEEEccCc
Confidence 499998877522 348999999988777766655331 223355566777655553322
Q ss_pred -------cCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEE
Q 002209 421 -------DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES 474 (953)
Q Consensus 421 -------~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~ 474 (953)
++............+..+|. +..+...-..-+.....+.+++||+++++++
T Consensus 154 ~~vP~pndg~~l~d~~~y~~~~t~ID~---~tm~V~~QV~V~g~ld~~~~s~dGK~af~Ts 211 (459)
T d1fwxa2 154 DETPLVNDGTNMEDVANYVNVFTAVDA---DKWEVAWQVLVSGNLDNCDADYEGKWAFSTS 211 (459)
T ss_dssp SCEESSCSSSSTTCGG-EEEEEEEEET---TTTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred cccccCCCCccccchhhcceEEEEEec---CCceEEEEeeeCCChhccccCCCCCEEEEEe
Confidence 11111111112234556774 3333322223345667899999999988876
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.18 E-value=0.017 Score=59.79 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=18.9
Q ss_pred CcEEEEEeChHHHHHHHHHHhC
Q 002209 759 SKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 759 ~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
++|-|+||||||.-+=+++...
T Consensus 105 ~kVnLIgHS~GGld~Ryl~~~l 126 (388)
T d1ku0a_ 105 GRVHIIAHSQGGQTARMLVSLL 126 (388)
T ss_dssp CCEEEEEETTHHHHHHHHHHHH
T ss_pred CceeEeecccccHHHHHHHHHh
Confidence 5899999999999988877653
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=94.44 E-value=3 Score=42.22 Aligned_cols=135 Identities=13% Similarity=0.019 Sum_probs=76.7
Q ss_pred eEeccCCCeEEEEEeeccc--cCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002209 194 VTWSQDGKHLAFSIRIDAE--DSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (953)
Q Consensus 194 ~~wSPDG~~laf~~~~~~~--~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~ 271 (953)
..-..|||.++|-....+. ........++++|+.+++..++........ ......++.+||+++++...
T Consensus 25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~-~~~~~~~~~~~g~i~v~Gg~-------- 95 (387)
T d1k3ia3 25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD-MFCPGISMDGNGQIVVTGGN-------- 95 (387)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC-CSSCEEEECTTSCEEEECSS--------
T ss_pred EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcc-cceeEEEEecCCcEEEeecC--------
Confidence 3345688877775532211 111223457899999887655432221110 00124578899988775410
Q ss_pred CCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC---CcccccccCCCCcEEE
Q 002209 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP---AVYTSLDPSPDEKYIL 347 (953)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~---~~~~~~~~SpDG~~l~ 347 (953)
....+.++|. ++.-+.+... ......+..+||+.++
T Consensus 96 ----------------------------------------~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v 135 (387)
T d1k3ia3 96 ----------------------------------------DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT 135 (387)
T ss_dssp ----------------------------------------STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEE
T ss_pred ----------------------------------------CCcceeEecCccCcccccccccccccccceeeecCCceee
Confidence 1134567787 6655555432 2334566788999877
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEEEeccC
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDL 384 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~ 384 (953)
+...... .....++++||..+.....+...
T Consensus 136 ~GG~~~~-------~~~~~~v~~yd~~~~~W~~~~~~ 165 (387)
T d1k3ia3 136 IGGSWSG-------GVFEKNGEVYSPSSKTWTSLPNA 165 (387)
T ss_dssp ECCCCCS-------SSCCCCEEEEETTTTEEEEETTS
T ss_pred ecccccc-------ccccceeeeecCCCCceeecCCC
Confidence 7653321 22345899999998887776553
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.79 E-value=0.097 Score=56.03 Aligned_cols=146 Identities=14% Similarity=0.069 Sum_probs=82.2
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccc---hHHHHHHHcCcEEEEcCCC
Q 002209 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS---TSVLLWLARGFAILGGPTT 721 (953)
Q Consensus 645 ~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~la~~G~~V~~~~~~ 721 (953)
...++..+.-|++.... ++. ..|++|++-|||.++.-......-||.....-+. .....|.+. ..+|.+|..
T Consensus 27 ~~~~~~~lffw~~~s~~-~~~---~~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~~~~~N~~SW~~~-anllfIDqP 101 (452)
T d1ivya_ 27 KSSGSKHLHYWFVESQK-DPE---NSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLI-ANVLYLESP 101 (452)
T ss_dssp ECSTTEEEEEEEECCSS-CGG---GSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGGGS-SEEEEECCS
T ss_pred ecCCCceEEEEEEEcCC-CCC---CCCEEEEECCCCcHHHHHHHHHccCCcEEcCCCCeeccCCcchhcc-cCEEEEecC
Confidence 44567788888774432 222 3799999999998765433333334432221110 001124444 334443432
Q ss_pred CCCCCCChhhh--hhhHHHHHHHHHHHH-HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---CC-CcccEEEEcccCC
Q 002209 722 PIIGEGDEEAN--DRFVEQLVACAEAAV-EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH---AP-HLFCCGIARSGAY 794 (953)
Q Consensus 722 ~~~G~G~~~~~--~~~~~~~~~D~~~~~-~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~---~p-~~~~a~v~~~~~~ 794 (953)
-.+|+...... .........|+.+++ +++...+.....++.|+|-||||..+-.++.. .+ -.++++++.+|+.
T Consensus 102 vGtGfS~~~~~~~~~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~Gi~igng~~ 181 (452)
T d1ivya_ 102 AGVGFSYSDDKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLS 181 (452)
T ss_dssp TTSTTCEESSCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCCS
T ss_pred CCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccccceEcCCCcc
Confidence 23344332211 112344556665555 45555555556799999999999998887753 22 2478999988875
Q ss_pred C
Q 002209 795 N 795 (953)
Q Consensus 795 d 795 (953)
+
T Consensus 182 d 182 (452)
T d1ivya_ 182 S 182 (452)
T ss_dssp B
T ss_pred C
Confidence 5
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.20 E-value=2.3 Score=42.55 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=68.2
Q ss_pred ccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCC
Q 002209 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVP 276 (953)
Q Consensus 197 SPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 276 (953)
.+||+..+|+.+-. ...+...|+.++.++.+.+.+........ .....++...||+..+ +-.. ...
T Consensus 107 ~~dg~~~L~vvnH~---~~~~~ieif~~~~~~~~l~~~~~v~~~~~-~~pNDv~~~~~g~fy~-Tnd~-~~~-------- 172 (340)
T d1v04a_ 107 DDDNTVYLLVVNHP---GSSSTVEVFKFQEEEKSLLHLKTIRHKLL-PSVNDIVAVGPEHFYA-TNDH-YFI-------- 172 (340)
T ss_dssp CTTCCEEEEEEECS---TTCCEEEEEEEETTTTEEEEEEEECCTTC-SSEEEEEEEETTEEEE-EESC-SCC--------
T ss_pred cCCCcEEEEEEecc---CCCceeEEEEEeCCCCeEEEEeecCCccc-cCccceEEecCCCEEE-ecCc-cCc--------
Confidence 46787777765421 23445677887766655443322222111 1145788888887444 3110 000
Q ss_pred CCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccCCCCcEEEEEEecCCc
Q 002209 277 LGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPY 355 (953)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~ 355 (953)
....+.+.. +.-...+.++.++ .++.+.+..+ .....+++|||+++|+++...
T Consensus 173 ------------~~~~~~~e~----------~~~~~~g~v~~~~-~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~--- 226 (340)
T d1v04a_ 173 ------------DPYLKSWEM----------HLGLAWSFVTYYS-PNDVRVVAEGFDFANGINISPDGKYVYIAELL--- 226 (340)
T ss_dssp ------------SHHHHHHHH----------HTTCCCEEEEEEC-SSCEEEEEEEESSEEEEEECTTSSEEEEEEGG---
T ss_pred ------------ChhhhhhhH----------hhcCCceeEEEEc-CCceEEEcCCCCccceeEECCCCCEEEEEeCC---
Confidence 000000000 0001334555555 3444444444 667789999999999888743
Q ss_pred cccccCCCCCcceEEEeccC
Q 002209 356 SFIVPCGRFPRQVGVWTTDG 375 (953)
Q Consensus 356 ~~~~~~~~~~~~i~~~d~~g 375 (953)
...|+++++++
T Consensus 227 ---------~~~i~~y~~~~ 237 (340)
T d1v04a_ 227 ---------AHKIHVYEKHA 237 (340)
T ss_dssp ---------GTEEEEEEECT
T ss_pred ---------CCeEEEEEeCC
Confidence 24788888864
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=93.13 E-value=5.1 Score=40.39 Aligned_cols=85 Identities=5% Similarity=-0.068 Sum_probs=49.0
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
.+.+||..+ ++..+.... ..+.........+.+||+.+++- +.+...++++|+.++.-..+...+..+.
T Consensus 53 ~~~~yd~~t-~~w~~~~~~-~~~~~~~~~~~~~~~~g~i~v~G--------g~~~~~~~~yd~~~~~w~~~~~~~~~r~- 121 (387)
T d1k3ia3 53 LTSSWDPST-GIVSDRTVT-VTKHDMFCPGISMDGNGQIVVTG--------GNDAKKTSLYDSSSDSWIPGPDMQVARG- 121 (387)
T ss_dssp EEEEECTTT-CCBCCCEEE-ECSCCCSSCEEEECTTSCEEEEC--------SSSTTCEEEEEGGGTEEEECCCCSSCCS-
T ss_pred EEEEEECCC-CcEeecCCC-CCCcccceeEEEEecCCcEEEee--------cCCCcceeEecCccCccccccccccccc-
Confidence 467888854 221111111 12222233456788999876652 2334678899999887777655444321
Q ss_pred ccccceEEecCCeEEEEE
Q 002209 244 AIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~ 261 (953)
....+..+||+.+++.
T Consensus 122 --~~~~~~~~dG~v~v~G 137 (387)
T d1k3ia3 122 --YQSSATMSDGRVFTIG 137 (387)
T ss_dssp --SCEEEECTTSCEEEEC
T ss_pred --ccceeeecCCceeeec
Confidence 2245566899887765
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.87 E-value=0.36 Score=50.75 Aligned_cols=142 Identities=10% Similarity=0.027 Sum_probs=76.4
Q ss_pred CcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccc--hHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS--TSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 649 g~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
+..+..|++.... ++. ..|+||++-|||.++.-......-||.....-+. .....|.+. ..+|..|..-.+|+
T Consensus 27 ~~~lfyw~~~s~~-~~~---~~Pl~~WlnGGPG~SS~~g~~~e~GP~~i~~~~~~~~N~~sW~~~-anllfiD~PvGtGf 101 (421)
T d1wpxa1 27 DKHFFFWTFESRN-DPA---KDPVILWLNGGPGCSSLTGLFFELGPSSIGPDLKPIGNPYSWNSN-ATVIFLDQPVNVGF 101 (421)
T ss_dssp CCEEEEEEECCSS-CTT---TSCEEEEECCTTTBCTHHHHHHTTSSEEECTTSCEEECTTCGGGS-SEEEEECCSTTSTT
T ss_pred CceEEEEEEEeCC-CCC---CCCEEEEECCCCcHHHHHHHHHhcCCcEECCCCccccCCcccccc-cCEEEEecCCCCCc
Confidence 4578777764332 333 3799999999997765433333333322211000 001123333 34444443223444
Q ss_pred CChhhhh-hhHHHHHHHHHHHHHHHHH-cCCC--CCCcEEEEEeChHHHHHHHHHHh---CC---CcccEEEEcccCCC
Q 002209 727 GDEEAND-RFVEQLVACAEAAVEEVVR-RGVA--HPSKIAVGGHSYGAFMTANLLAH---AP---HLFCCGIARSGAYN 795 (953)
Q Consensus 727 G~~~~~~-~~~~~~~~D~~~~~~~l~~-~~~~--d~~~i~l~G~S~GG~~a~~~a~~---~p---~~~~a~v~~~~~~d 795 (953)
....... ..-.....|+.+++....+ .+.. ...++.|+|-||||..+-.+|.. .. -.++++++..|+.|
T Consensus 102 Sy~~~~~~~~~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGng~~d 180 (421)
T d1wpxa1 102 SYSGSSGVSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTD 180 (421)
T ss_dssp CBCSSCCCCSHHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEESCCCC
T ss_pred eecCCccccchHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecCCccc
Confidence 4322111 1123445566666654443 3332 24589999999999988777642 22 24789999998766
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.43 E-value=11 Score=38.86 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=40.9
Q ss_pred eeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccc
Q 002209 325 VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRS 403 (953)
Q Consensus 325 ~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~ 403 (953)
.+.+... .....++|.|||+.++..+ ..+.|++++.+++..+.+...+...... .-..|.-.
T Consensus 19 ~~~ia~~L~~P~~la~~pdg~llVter-------------~~G~i~~v~~~~g~~~~i~~~~~~~~~~----~ge~GLLg 81 (450)
T d1crua_ 19 KKVILSNLNKPHALLWGPDNQIWLTER-------------ATGKILRVNPESGSVKTVFQVPEIVNDA----DGQNGLLG 81 (450)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEET-------------TTCEEEEECTTTCCEEEEEECTTCCCCT----TSSCSEEE
T ss_pred EEEEECCCCCceEEEEeCCCeEEEEEe-------------cCCEEEEEECCCCcEeecccCCcccccc----CCCCceee
Confidence 3334444 5667889999998655442 1248889988877777766543221111 11234456
Q ss_pred eeeccC
Q 002209 404 INWRSD 409 (953)
Q Consensus 404 ~~wspD 409 (953)
+++.||
T Consensus 82 ia~~Pd 87 (450)
T d1crua_ 82 FAFHPD 87 (450)
T ss_dssp EEECTT
T ss_pred EEeCCC
Confidence 889887
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=90.24 E-value=9.6 Score=37.72 Aligned_cols=43 Identities=9% Similarity=-0.011 Sum_probs=29.2
Q ss_pred CCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 445 GEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 445 g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
+++.+.+...-...+++++|||++.|+++.... . +|+++++++
T Consensus 195 ~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~-~--~i~~y~~~~ 237 (340)
T d1v04a_ 195 PNDVRVVAEGFDFANGINISPDGKYVYIAELLA-H--KIHVYEKHA 237 (340)
T ss_dssp SSCEEEEEEEESSEEEEEECTTSSEEEEEEGGG-T--EEEEEEECT
T ss_pred CCceEEEcCCCCccceeEECCCCCEEEEEeCCC-C--eEEEEEeCC
Confidence 445555555555567899999999988876544 2 566666654
|
| >d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus [TaxId: 4844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizopus niveus [TaxId: 4844]
Probab=90.13 E-value=0.21 Score=48.51 Aligned_cols=42 Identities=26% Similarity=0.171 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002209 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (953)
Q Consensus 736 ~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (953)
+.....++...++.+.+... ..+|.+.|||+||.+|..++..
T Consensus 112 ~~~~~~~i~~~v~~~~~~~~--~~~i~vtGHSLGGAlA~L~a~~ 153 (265)
T d1lgya_ 112 YEQVVNDYFPVVQEQLTAHP--TYKVIVTGHSLGGAQALLAGMD 153 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHCT--TCEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCC--CceEEEEecccchHHHHHHHHH
Confidence 45556677777776665532 3589999999999999888764
|
| >d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Penicillium camembertii [TaxId: 5075]
Probab=88.74 E-value=0.24 Score=48.34 Aligned_cols=41 Identities=22% Similarity=0.215 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002209 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (953)
Q Consensus 737 ~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (953)
.....++...++.+.+... ..+|.++|||+||.+|..++..
T Consensus 117 ~~~~~~i~~~i~~~~~~~~--~~~i~iTGHSLGGAlA~L~a~~ 157 (271)
T d1tiaa_ 117 KLVRDDIIKELKEVVAQNP--NYELVVVGHSLGAAVATLAATD 157 (271)
T ss_pred HHHHHHHHHHHHHHHHhCC--CceEEEeccchHHHHHHHHHHH
Confidence 4455666677766655531 3589999999999999988765
|
| >d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Feruloyl esterase A species: Aspergillus niger [TaxId: 5061]
Probab=88.68 E-value=0.3 Score=47.30 Aligned_cols=41 Identities=27% Similarity=0.231 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002209 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (953)
Q Consensus 737 ~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (953)
.....++...++.+.++.. ..+|.+.|||+||.+|..++..
T Consensus 105 ~~i~~~i~~~i~~~~~~~~--~~~i~vTGHSLGGAlA~L~a~~ 145 (261)
T d1uwca_ 105 ISVQDQVESLVKQQASQYP--DYALTVTGHSLGASMAALTAAQ 145 (261)
T ss_dssp HHHHHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCC--CcceEEeccchhHHHHHHHHHH
Confidence 4455666777777766532 3489999999999999887764
|
| >d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
Probab=88.57 E-value=0.31 Score=47.47 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002209 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (953)
Q Consensus 737 ~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (953)
.....++...++.+.++.. .-+|.++|||+||.+|..++..
T Consensus 118 ~~~~~~v~~~v~~~~~~~~--~~~i~vtGHSLGGalA~l~a~~ 158 (269)
T d1tiba_ 118 RSVADTLRQKVEDAVREHP--DYRVVFTGHSLGGALATVAGAD 158 (269)
T ss_dssp HHHHHHHHHHHHHHHHHCT--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--CcceeeeccchHHHHHHHHHHH
Confidence 4445666666666665532 2489999999999999988874
|
| >d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei [TaxId: 4839]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizomucor miehei [TaxId: 4839]
Probab=88.35 E-value=0.34 Score=47.02 Aligned_cols=42 Identities=21% Similarity=0.149 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002209 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (953)
Q Consensus 736 ~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (953)
+.....++...+..+.++. ...+|.+.|||+||.+|..++..
T Consensus 111 ~~~v~~~i~~~i~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~~ 152 (265)
T d3tgla_ 111 YGEVQNELVATVLDQFKQY--PSYKVAVTGHSLGGATVLLCALD 152 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC--CCceEEEecccchHHHHHHHHHH
Confidence 3455566666666655543 23589999999999999988753
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=87.75 E-value=0.81 Score=48.80 Aligned_cols=125 Identities=16% Similarity=0.089 Sum_probs=66.9
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccc--hHHHHHHHcCcEEEEcCCCCCCCCCChhhh----------hhhHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS--TSVLLWLARGFAILGGPTTPIIGEGDEEAN----------DRFVE 737 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~G~~V~~~~~~~~~G~G~~~~~----------~~~~~ 737 (953)
.|++|++-|||.++.-......-||..+..-+. .....|.+. ..||.+|..-..|+...... .....
T Consensus 67 ~Pl~lWlnGGPGcSS~~g~f~E~GP~~v~~~~~l~~Np~SWn~~-an~lfIDqPvGvGfSy~~~~~~~~~~~~~~~~~~~ 145 (483)
T d1ac5a_ 67 RPLIIWLNGGPGCSSMDGALVESGPFRVNSDGKLYLNEGSWISK-GDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLE 145 (483)
T ss_dssp CCEEEEECCTTTBCTHHHHHHSSSSEEECTTSCEEECTTCGGGT-SEEEEECCSTTSTTCSSCCSSGGGSCTTSSCCSHH
T ss_pred CCEEEEECCCCcHHHHHHHHHccCCeEECCCCceeeCCCccccc-CCEEEEeCCCCcCeeecCCCCccccccccccCCHH
Confidence 599999999998764333223333333221110 001123333 44555443333454432211 01123
Q ss_pred HHHHHHHHHHH-HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-----------C-CcccEEEEcccCCC
Q 002209 738 QLVACAEAAVE-EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-----------P-HLFCCGIARSGAYN 795 (953)
Q Consensus 738 ~~~~D~~~~~~-~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-----------p-~~~~a~v~~~~~~d 795 (953)
....|+..++. |+...+.....++.|+|-||||..+-.+|..- + =.++++++..|+.+
T Consensus 146 ~~a~~~~~fl~~f~~~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~~~~inLkGi~IGNg~~d 216 (483)
T d1ac5a_ 146 DVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWID 216 (483)
T ss_dssp HHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTTSCCEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHhCcccccCCeEEeecccccchHHHHHHHHHHhccccccCCCcccceeeeecCCccC
Confidence 44555555554 34444554567999999999998887766531 1 13788888777644
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=86.76 E-value=4.5 Score=42.19 Aligned_cols=15 Identities=7% Similarity=0.452 Sum_probs=11.6
Q ss_pred cceEEecCCeEEEEE
Q 002209 247 DNFVWVNNSTLLVCT 261 (953)
Q Consensus 247 ~~~~wspDg~~l~~~ 261 (953)
..++|.|||+.++..
T Consensus 30 ~~la~~pdg~llVte 44 (450)
T d1crua_ 30 HALLWGPDNQIWLTE 44 (450)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred eEEEEeCCCeEEEEE
Confidence 378899999877643
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.47 E-value=20 Score=34.24 Aligned_cols=145 Identities=10% Similarity=0.033 Sum_probs=73.9
Q ss_pred ceEEEEEc-CC-ceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccC
Q 002209 314 TQLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDI 390 (953)
Q Consensus 314 ~~l~~~~~-~g-~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~ 390 (953)
..|.++|+ +. +.+...-+..+.-+.|-- -+.|+++. ...+|-|+++|. ++..+......-
T Consensus 83 ~~LQiFnletK~klks~~~~e~VvfWkWis-~~~L~lVT--------------~taVYHW~~~g~s~P~k~fdR~~~L-- 145 (327)
T d1utca2 83 KTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVALVT--------------DNAVYHWSMEGESQPVKMFDRHSSL-- 145 (327)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCCEEEESS-SSEEEEEC--------------SSEEEEEESSSSCCCEEEEECCGGG--
T ss_pred CeEEEEehhHhhhhceEEcCCCcEEEEecC-CCEEEEEc--------------CCceEEEcccCCCCchhhhhhcccc--
Confidence 35667788 44 444444444455556663 45687776 237999999753 344443321110
Q ss_pred CccccccccCccceeeccCCCCceEE-EEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeee--ccCC
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYW-AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW--CDDS 467 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~-~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~--SpDg 467 (953)
+ ...+-++.-++|++.++.. +...+++ ..+.-+||..+ -+..+.+.++......+.. .++-
T Consensus 146 ----~--~~QIInY~~d~~~kW~~l~GI~~~~~~-----i~G~mQLYS~e-----r~~sQ~ieGhaa~F~~~~~~g~~~~ 209 (327)
T d1utca2 146 ----A--GCQIINYRTDAKQKWLLLTGISAQQNR-----VVGAMQLYSVD-----RKVSQPIEGHAASFAQFKMEGNAEE 209 (327)
T ss_dssp ----T--TCEEEEEEECTTSCEEEEEEEEEETTE-----EEEEEEEEETT-----TTEEEEECCSEEEEEEECCTTCSSC
T ss_pred ----c--CceEEEEEECCCCCEEEEEeEecCCCc-----eeEEEEEEEec-----cCcCccccceeeeeEEEEcCCCCCC
Confidence 0 1223456778889887776 4443321 12333444433 2333445544433332222 1222
Q ss_pred ceEEEEEecccCceEEEEEcCCCC
Q 002209 468 LALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
..|+.-.+++....+|.+++++..
T Consensus 210 ~~lf~fa~r~~~~~kLhIiEig~~ 233 (327)
T d1utca2 210 STLFCFAVRGQAGGKLHIIEVGTP 233 (327)
T ss_dssp EEEEEEEEEETTEEEEEEEECSCC
T ss_pred ceEEEEEECCCCCcEEEEEEcCCC
Confidence 234433344444468999988763
|