Citrus Sinensis ID: 002260

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940------
MLRIFSCNNNSVKLLQMCINCNFGTLIFVRNWCHIHANIVSGGIMAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF
cccEEEEcccHHHHHHHHHccccccEEEEcccEEEEEcccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEccEEccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEccccEEEEEEcccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEHHHHHccccccccccccccccccEEcEEEEccccEEEEEcccccccccccEEEccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccccEEEEEEcHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccccccccccccEEEEEcccccccHHHccHHHHHHccccccccccccc
ccEEEEcccccHHHHHHHEcccccHHEEEHcHHHHHHHHHcccEEEEEccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccHHHHHHHcccHHHHcccccccccccccccccccccccHHccccccccccccccccccccccccccccccccHHHHcccccccHHcccccccccccccccccHHccccHHHHccccHHHHHcccccccccccEEEEEEEcccccccccccccccccEEccEEccccHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHHcHHHHccccccEEcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcEEEEccEEEEEcccEccccEEccccccccccccEEccccHHHcEEEccccccccccccccccccEEEccccccccEEEEcccccccEEEEcEccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEEEccccEEEEEEEcHHHcEEEEEEEccHHHHHHHHHHccccccccEccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEccHHHHHHcccHHHHHHHHHHHcccHHHcccHHHHHHcHHHHHccccccc
mlrifscnnnSVKLLQMCINCNFGTLIFVRNWCHIHANIVSGGIMAVeasskpsrvydfdddedgpavfkrntaasrqnlanpevkrpssstangqnsnapkdkttvssskvlpvkspppsqkattssakaspskspmrspvkspvrspvkspvanskessplddrlkqspqhnALAVVKKeeikdgnglksddndseddkplsarlkgnsknvnqgigaskadAAISEvnvktdpedsddevplssrfpksnagtsgakpidsdekkplaskvqqngstsretqqksssvpvkrplqkasssgassakkpkvsdtskevkVKQVTVKVekkaddddhipisqrmknsapsvkksVTNTAKATKSVSSSSNKINKKTKKVIKnsqyskstkmlpgsgdgqkkwTTLVhngvifpppylphgvkmlykgkevnltpeqEEVATMFAVMLdtdymqkpkfrENFWNDWRKLLGKNHviqnlegcdfkpiydWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKekvgnfrveppglfrgrgehpkmgklkkriqpsditinigkdvpipecpipgeswkevkhdnTVTWLAfwndpinpkefKYVFLAASsslkgqsdrEKYEKARKLKDYIHSIRAAYtkdfvsrdgtRRQIAVATYLIDKLALragnekdddeadtvgcctlkvgnvecippnklkfdflgkdsiqyVNTVEVELPVYKAIgqfqtgkkqnddLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLdgmlnkgtgdgdvAVKIDVYQRANKEVAIICNhqrtvsktHSAQMSRLTEKIEDLKGVLKDLRVDLdrakkgkpplmkdsdgkrkrnlAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGtskinyldpritvawckrhevpiekIFNKSLLAKFAwamdvdpefrf
MLRIFSCNNNSVKLLQMCINCNFGTLIFVRNWCHIHANIVSGGIMAVEASSKPSRVYDFDDDEDGPAVFKRntaasrqnlanpevkrpssstangqnsnapkdkttvssskvlpvkspppsqkattssakaspskspmrspvkspvrspvkspvanskessplddrlkqspqhnalavvkkeeikdgnglksddndseddkplsarlkgnsknvnqgigaskadaaiSEVNVktdpedsddevplssrfpksnagtsgakpidsdekkpLASKvqqngstsretqqksssvpvkrplqkasssgassakkpkvsdtskevkvkqvtvkvekkaddddhipisqrmknsapsvkksvtntakatksvssssnkinkktkkviknsqyskstkmlpgsgdGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKeeknkqeeKYMWAIVDgvkekvgnfrveppglfrgrgehpkmgklkkriqpsditinigkdvpipeCPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAAssslkgqsdrekYEKARKLKDYIHSIRaaytkdfvsrdgtrrQIAVATYLIDKLALragnekdddeaDTVGCCTLkvgnvecippnkLKFDFLGKDSIQYVNTVEVELPVYKAIGQfqtgkkqndDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIicnhqrtvskthsaqmsRLTEKIEDLKGVLKDLrvdldrakkgkpplmkdsdgkrkrnlapealerkmaqtnakiekmerdmktkedlktvalgtskinyldpRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF
MLRIFSCNNNSVKLLQMCINCNFGTLIFVRNWCHIHANIVSGGIMAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNAPKDkttvssskvlpvkspppsqkattssakaspskspMRSPVKSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQkasssgassakkpkvsDTSkevkvkqvtvkvekkADDDDHIPISQRMKNSAPSVKKSVtntakatksvssssnkinkktkkviknsQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHqeqkekkkqmsseekkalkeeknkqeekYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF
***IFSCNNNSVKLLQMCINCNFGTLIFVRNWCHIHANIVSGGIMAV******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWH****************************YMWAIVDGVKEKVGNFRVEP*GL********************DITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAA*****************KLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNE***DEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTV********************VL**********************************************************KTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDV******
*LRI***NNNSVKLLQMCINCNFGTLIFVRNWCHI**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************PGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWH************************QEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAA**************KARKLKDYIHSIRAAY************QIAVATYLIDKLALR************VGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNH***********************GVLK*********************************************************KTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF
MLRIFSCNNNSVKLLQMCINCNFGTLIFVRNWCHIHANIVSGGIMAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQN****************************************************************************************KQSPQHNALAVVKKEEIKDG***************LSARLKGNSKNVNQGIGASKADAAISE****************SSRFPK**********************************************************************VKQVTVKVEKKADDDDHIPISQRM************************************KNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQ************************EEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASS*************ARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAG********DTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRT********MSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF
MLRIFSCNNNSVKLLQMCINCNFGTLIFVRNWCHIHANIVSGGIMAVEASSKPSRVYDFDDDEDGPAVFKRN*********************************************************************************************************************************************************************************************************************************************************************************************************************************P*SGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRA******DEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGK************RNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLRIFSCNNNSVKLLQMCINCNFGTLIFVRNWCHIHANIVSGGIMAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQxxxxxxxxxxxxxxxxxxxxxxxxxxxxKPPLMKDSDGKRKRNLAxxxxxxxxxxxxxxxxxxxxxxxxxxxxKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query946 2.2.26 [Sep-21-2011]
P30181916 DNA topoisomerase 1 OS=Ar no no 0.859 0.887 0.646 0.0
P93119790 DNA topoisomerase 1 OS=Da N/A no 0.782 0.936 0.604 0.0
Q54RC3893 DNA topoisomerase 1 OS=Di yes no 0.568 0.602 0.483 1e-152
P04786769 DNA topoisomerase 1 OS=Sa yes no 0.578 0.711 0.447 1e-142
P30189972 DNA topoisomerase 1 OS=Dr yes no 0.550 0.536 0.485 1e-142
P11387765 DNA topoisomerase 1 OS=Ho yes no 0.568 0.703 0.499 1e-140
Q7YR26767 DNA topoisomerase 1 OS=Ch N/A no 0.568 0.701 0.499 1e-140
Q969P6601 DNA topoisomerase I, mito no no 0.568 0.895 0.477 1e-140
Q07050767 DNA topoisomerase 1 OS=Cr yes no 0.568 0.701 0.497 1e-139
Q9WUL0767 DNA topoisomerase 1 OS=Ra yes no 0.568 0.701 0.497 1e-139
>sp|P30181|TOP1_ARATH DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1005 bits (2599), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/873 (64%), Positives = 653/873 (74%), Gaps = 60/873 (6%)

Query: 129 AKASPSK--SPMRSPVKSP---VRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEE 183
           +KA P+   SPMRSPV SP     S   S V +S  SS       +SP  N +    K+ 
Sbjct: 46  SKAVPTTKVSPMRSPVTSPNGTTPSNKTSIVKSSMPSSSSKASPAKSPLRNDMPSTVKDR 105

Query: 184 I---KDGNGLKSDDNDSEDDKPLSARLKGN-----SKNVN--QGIGASKADAAISEVNVK 233
               KD +  K +  DSEDD+PLS+ L GN     S+ V+  Q    +  D  +   + +
Sbjct: 106 SQLQKDQSECKIEHEDSEDDRPLSSILSGNKGPTSSRQVSSPQPEKKNNGDRPLDRAS-R 164

Query: 234 TDPEDSDDEVPLSSRFPKS-NAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVP 292
              ++SDDE P+SS F K  ++G SG   + +DEKKPL  K+ QNGST +  +  +  V 
Sbjct: 165 IIKDESDDETPISSMFRKKIDSGMSGGNQLSNDEKKPLVQKLHQNGSTVK-NEVPNGKVL 223

Query: 293 VKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHI------------- 339
            KRPL+K SS+  SS KK K+S +   VK+KQ +VK  K+ DD   +             
Sbjct: 224 GKRPLEKNSSADQSSLKKAKISASPTSVKMKQDSVK--KEIDDKGRVLVSPKMKAKQLST 281

Query: 340 -------------PISQRMKNSAP----------SVKKSVTNTA---KATKSVSSSSNKI 373
                        PIS+R K+ +           +VK + T++A   KA   VS  S  +
Sbjct: 282 REDGTDDDDDDDVPISKRFKSDSSNSNTSSAKPKAVKLNSTSSAAKPKARNVVSPRSRAM 341

Query: 374 NKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNL 433
            K TKKV K+S+YS S+K  P SGDGQKKWTTLVHNGVIFPPPY PHG+K+LYKGK V+L
Sbjct: 342 TKNTKKVTKDSKYSTSSKSSPSSGDGQKKWTTLVHNGVIFPPPYKPHGIKILYKGKPVDL 401

Query: 434 TPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQE 493
           T EQEEVATMFAVM +TDY  KP+FRENFWNDWR+LLGK HVIQ L+ CDF PIY+WH E
Sbjct: 402 TIEQEEVATMFAVMRETDYYTKPQFRENFWNDWRRLLGKKHVIQKLDDCDFTPIYEWHLE 461

Query: 494 QKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMG 553
           +KEKKKQMS+EEKKALKEEK KQEEKYMWA+VDGVKEK+GNFRVEPPGLFRGRGEHPKMG
Sbjct: 462 EKEKKKQMSTEEKKALKEEKMKQEEKYMWAVVDGVKEKIGNFRVEPPGLFRGRGEHPKMG 521

Query: 554 KLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFL 613
           KLKKRI P +IT+NIGK  PIPECPI GE WKEVKHDNTVTWLAFW DPINPKEFKYVFL
Sbjct: 522 KLKKRIHPCEITLNIGKGAPIPECPIAGERWKEVKHDNTVTWLAFWADPINPKEFKYVFL 581

Query: 614 AASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRA 673
            A SSLKG SD+EKYEKAR L D+I +IR  YTK+F ++D   RQIAVATYLIDKLALRA
Sbjct: 582 GAGSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTAKDVKMRQIAVATYLIDKLALRA 641

Query: 674 GNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQ 733
           GNEKDDDEADTVGCCTLKVGNVECIPPNK+KFDFLGKDSIQYVNTVEVE  VYKAIGQFQ
Sbjct: 642 GNEKDDDEADTVGCCTLKVGNVECIPPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQ 701

Query: 734 TGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKI 793
            GK + DDLFD+LDT+KLNAHLKEL+PGLTAKVFRTYNASITLD ML++ T DGDV  KI
Sbjct: 702 AGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQKI 761

Query: 794 DVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLM 853
            VYQ+ANKEVAIICNHQRTVSKTH AQ+ +LT +IE+LK VLK+L+ +LDRAKKGKPPL 
Sbjct: 762 VVYQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPL- 820

Query: 854 KDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVA 913
           + SDGK+ R+L P A E+K+AQ +AKIEKMERDM TKEDLKTVALGTSKINYLDPRITVA
Sbjct: 821 EGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYLDPRITVA 880

Query: 914 WCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 946
           WCKRHEVPIEKIF KSLL KFAWAMDV+PE+RF
Sbjct: 881 WCKRHEVPIEKIFTKSLLEKFAWAMDVEPEYRF 913
Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: .EC: 2
>sp|P93119|TOP1_DAUCA DNA topoisomerase 1 OS=Daucus carota GN=TOP1 PE=2 SV=1 Back     alignment and function description
>sp|Q54RC3|TOP1_DICDI DNA topoisomerase 1 OS=Dictyostelium discoideum GN=top1 PE=3 SV=1 Back     alignment and function description
>sp|P04786|TOP1_YEAST DNA topoisomerase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOP1 PE=1 SV=2 Back     alignment and function description
>sp|P30189|TOP1_DROME DNA topoisomerase 1 OS=Drosophila melanogaster GN=Top1 PE=1 SV=1 Back     alignment and function description
>sp|P11387|TOP1_HUMAN DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2 Back     alignment and function description
>sp|Q7YR26|TOP1_CHLAE DNA topoisomerase 1 OS=Chlorocebus aethiops GN=TOP1 PE=2 SV=1 Back     alignment and function description
>sp|Q969P6|TOP1M_HUMAN DNA topoisomerase I, mitochondrial OS=Homo sapiens GN=TOP1MT PE=2 SV=1 Back     alignment and function description
>sp|Q07050|TOP1_CRIGR DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9WUL0|TOP1_RAT DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query946
255576254891 DNA topoisomerase type I, putative [Rici 0.918 0.975 0.715 0.0
224061073877 predicted protein [Populus trichocarpa] 0.897 0.968 0.715 0.0
187369231894 topoisomerase I [Camptotheca acuminata] 0.920 0.974 0.681 0.0
224116648860 predicted protein [Populus trichocarpa] 0.903 0.994 0.695 0.0
449463731889 PREDICTED: DNA topoisomerase 1-like [Cuc 0.920 0.979 0.671 0.0
187369229927 topoisomerase I [Ophiorrhiza japonica] 0.927 0.946 0.641 0.0
334683317925 topoisomerase I [Ophiorrhiza pseudofasci 0.927 0.948 0.645 0.0
187369225926 topoisomerase I [Ophiorrhiza pumila] 0.932 0.952 0.635 0.0
187369227926 topoisomerase I [Ophiorrhiza liukiuensis 0.932 0.952 0.635 0.0
334683313920 topoisomerase I [Ophiorrhiza pedunculata 0.920 0.946 0.646 0.0
>gi|255576254|ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus communis] gi|223531500|gb|EEF33331.1| DNA topoisomerase type I, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1213 bits (3138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/922 (71%), Positives = 739/922 (80%), Gaps = 53/922 (5%)

Query: 45  MAVEASSKPSRVYDFDDDEDGPAVFKR-NTAASRQNLANPEVKRP--SSSTANGQNSNAP 101
           MA  A++KP+     +DD+D P VFKR N + ++QN +NPEVK+P  SS  +NGQ+SNA 
Sbjct: 3   MAAPATAKPNIYEYDEDDDDMPLVFKRGNNSTTKQNQSNPEVKKPLLSSQNSNGQSSNAQ 62

Query: 102 KDKTTVSSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVKSPVRSPVKSPVANSKESS 161
           K K+TV S K  PVKSP  S KA+TSSAKASP                ++SPVANSK SS
Sbjct: 63  KGKSTVPSLKASPVKSPIGSPKASTSSAKASP----------------LRSPVANSKGSS 106

Query: 162 PLDDRLKQSPQHNALAVVK-----KEEIKDGNGLKS---------DDNDSEDDKPLSARL 207
            LD++LKQ+ + NA  VVK     K EI    GLKS         DD DSEDD PLSAR 
Sbjct: 107 SLDEQLKQASKQNASNVVKDVSSAKPEI----GLKSVKHETKSNGDDEDSEDDLPLSARR 162

Query: 208 KGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDE-VPLSSRFP-KSNAGTSGAKPIDSD 265
           KGN+ NV++ + A K          +   EDSDD+ VPL SRFP KS AGTSG KP +  
Sbjct: 163 KGNTNNVSKVVTAPK----------RVKDEDSDDDKVPLCSRFPMKSTAGTSGNKPNNIS 212

Query: 266 EKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQV 325
           EKKPL SKVQQNGSTS++ QQK+  +P KRPL KA+SS  SS KKPK+S  S   KVKQ 
Sbjct: 213 EKKPLPSKVQQNGSTSKDKQQKAPLIPTKRPLDKANSSEQSSIKKPKLSAGSTITKVKQA 272

Query: 326 TVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQ 385
           TVK E+  DD D IPI+QR K+   S  K  +   KA K VSSS  K  KK KK +KN++
Sbjct: 273 TVKAEE--DDPDDIPIAQRKKSLGSSESKLSSAKQKAIKVVSSSFKKPIKKNKKQMKNTK 330

Query: 386 YSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFA 445
           YSKSTK+ P S DGQKKWTTL+HNGVIFPPPY PHG+K+LYKG+ V+L PEQEEVATMFA
Sbjct: 331 YSKSTKVQPSSTDGQKKWTTLIHNGVIFPPPYKPHGIKILYKGRPVDLAPEQEEVATMFA 390

Query: 446 VMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEE 505
           VM DTDYMQKPKF ENFWNDWRKLLG+NHVIQ LE CDF PIY+WH+ +KEKKKQMS+EE
Sbjct: 391 VMKDTDYMQKPKFLENFWNDWRKLLGRNHVIQKLEDCDFTPIYEWHEREKEKKKQMSTEE 450

Query: 506 KKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDIT 565
           KKA KEEK +QEEKYMWAIVDGVKEKVGNFRVEPP LFRGRGEHPKMGKLKKRIQPSDIT
Sbjct: 451 KKAQKEEKLRQEEKYMWAIVDGVKEKVGNFRVEPPALFRGRGEHPKMGKLKKRIQPSDIT 510

Query: 566 INIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDR 625
           INIGKD PIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD+
Sbjct: 511 INIGKDAPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDK 570

Query: 626 EKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTV 685
           EKYEKARKLKDYIH+IRAAY KD  S+D T++QIAVATYLIDKLALRAGNEKDDDEADTV
Sbjct: 571 EKYEKARKLKDYIHNIRAAYQKDLRSKDITKKQIAVATYLIDKLALRAGNEKDDDEADTV 630

Query: 686 GCCTLKVGNVECIPPN-KLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFD 744
           GCCTLKV NVECIP +  LKFDFLGKDSI+Y NTVEV+  VY+AIG FQ GKKQ DDLFD
Sbjct: 631 GCCTLKVANVECIPGSFNLKFDFLGKDSIRYENTVEVKPEVYEAIGTFQKGKKQTDDLFD 690

Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVA 804
           KLDT KLNAHLKELMPGLTAKVFRTYNASITLD  L + T DGDVA K+ +YQRANKEVA
Sbjct: 691 KLDTTKLNAHLKELMPGLTAKVFRTYNASITLDEKLYEETEDGDVAEKVVIYQRANKEVA 750

Query: 805 IICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNL 864
           IICNHQRT+SK+H AQMS+L EKIE+LK  LK+L+ DLDRAKKGKPPL KD+DGK+KRNL
Sbjct: 751 IICNHQRTISKSHGAQMSKLIEKIEELKATLKELKTDLDRAKKGKPPL-KDADGKQKRNL 809

Query: 865 APEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEK 924
           +PE +E+K+A TN +IEKME +MKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEK
Sbjct: 810 SPENIEKKIASTNQRIEKMELNMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEK 869

Query: 925 IFNKSLLAKFAWAMDVDPEFRF 946
           IFNKSLLAKF WAMDVDP+FRF
Sbjct: 870 IFNKSLLAKFTWAMDVDPQFRF 891

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224061073|ref|XP_002300344.1| predicted protein [Populus trichocarpa] gi|222847602|gb|EEE85149.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|187369231|dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata] Back     alignment and taxonomy information
>gi|224116648|ref|XP_002317355.1| predicted protein [Populus trichocarpa] gi|222860420|gb|EEE97967.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449463731|ref|XP_004149585.1| PREDICTED: DNA topoisomerase 1-like [Cucumis sativus] gi|449503189|ref|XP_004161878.1| PREDICTED: DNA topoisomerase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|187369229|dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica] Back     alignment and taxonomy information
>gi|334683317|dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata] Back     alignment and taxonomy information
>gi|187369225|dbj|BAG31373.1| topoisomerase I [Ophiorrhiza pumila] Back     alignment and taxonomy information
>gi|187369227|dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis] Back     alignment and taxonomy information
>gi|334683313|dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query946
TAIR|locus:2173862917 TOP1BETA "DNA topoisomerase 1 0.940 0.970 0.555 6.9e-253
UNIPROTKB|Q84ZL5916 OJ1066_B03.125 "Os08g0154600 p 0.739 0.764 0.629 1.5e-249
UNIPROTKB|A8IDM1586 TOP1 "DNA topoisomerase I" [Ch 0.590 0.953 0.571 3.4e-169
FB|FBgn0004924972 Top1 "Topoisomerase 1" [Drosop 0.556 0.541 0.471 9.2e-133
UNIPROTKB|P11387765 TOP1 "DNA topoisomerase 1" [Ho 0.568 0.703 0.479 4.2e-132
UNIPROTKB|Q7YR26767 TOP1 "DNA topoisomerase 1" [Ch 0.568 0.701 0.479 1.8e-131
UNIPROTKB|F1SDV7769 TOP1 "Uncharacterized protein" 0.568 0.699 0.475 3.7e-131
UNIPROTKB|F1MN93769 TOP1 "Uncharacterized protein" 0.568 0.699 0.473 4.8e-131
UNIPROTKB|Q75CB7732 AGOS_ACL008C "ACL008Cp" [Ashby 0.522 0.674 0.454 5.7e-131
RGD|621246767 Top1 "topoisomerase (DNA) I" [ 0.568 0.701 0.477 9.9e-131
TAIR|locus:2173862 TOP1BETA "DNA topoisomerase 1 beta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2435 (862.2 bits), Expect = 6.9e-253, P = 6.9e-253
 Identities = 513/923 (55%), Positives = 611/923 (66%)

Query:    45 MAVEASSKP-----SRVYDFDDDEDGPAVFKRNT-AASRQNLANPEVKRPSSSTANGQNS 98
             MA EA  KP        Y+ +D++D P VFKRN+  A+  N  +P +     ++A G   
Sbjct:     1 MATEAFVKPVVPNGHDGYEDEDEDDIPLVFKRNSNTAATTNRPSP-INNAMRNSAIGSTK 59

Query:    99 NAPKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRSPVKSPVRSPV-------- 150
             ++P                                    ++SP++   RS V        
Sbjct:    60 SSPPMRSPLTSPNRSASSSTRSSMMKPALPSSSSVQRSTLKSPLRDD-RSVVAKERNGFG 118

Query:   151 KSP-VANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKG 209
             K+P V+ S +    DD+    P    L +  KE  K  +            K  + R +G
Sbjct:   119 KAPSVSKSDDEDSEDDK----PLSARLKLDSKEVTKQPSSSGRGSTQQAVQKS-NMRPQG 173

Query:   210 NSKNVNQGIGASKADAAISEVNVKTDPEDSDDE-VPLSSRFPK-SNAGTSGAKP-IDSDE 266
              S    + +   +A  + S V  KT    S  + V +  + P  +N   +G KP  +   
Sbjct:   174 LSDYTKKKVLDERAPMS-STVQTKTSVGTSSSKPVHIEQKRPLVNNIDRNGLKPKTEGHS 232

Query:   267 KKPLASKVQQNGSTSRETQQKSS--SVPVKRPLQXXXXXXXXXXXXXXXXDTSXXX-XXX 323
              +  A +  + GS+S ++  K    S P  RP++                +         
Sbjct:   233 SQAPAKRPLEKGSSSNQSSVKRPKLSEPA-RPVKVEQGSHISATQDAKGKNLDASKPLRA 291

Query:   324 XXXXXXXXXADDDDHIPISQRMKNSAPSVKKSVXXXXXXXXXXXXXXXXXXXXXXXXXXX 383
                      +D DDH+PI+ RMK+ + S  KS                            
Sbjct:   292 NQATVKEDNSDGDDHVPIASRMKSDS-SNNKSSSAKPSSSKMIASSSRTIAQKPNKWVKD 350

Query:   384 XQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATM 443
              +YSKS+K LP SGDGQKKW TL HNGVIFPPPY  HGVK+L++GK V+LTPEQEEVATM
Sbjct:   351 SKYSKSSKSLP-SGDGQKKWKTLQHNGVIFPPPYKRHGVKILFQGKPVDLTPEQEEVATM 409

Query:   444 FAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXX 503
             FAVM +T+Y +KPKFRENFWNDWRKLLGKNH+I++L+ CDF PIY+W+            
Sbjct:   410 FAVMRETEYYKKPKFRENFWNDWRKLLGKNHMIKSLDDCDFTPIYEWYMQEKETKKQMTA 469

Query:   504 XXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSD 563
                             YMWA++DGV+E++GNFRVEPPGLFRGRGEHPKMGKLKKRI+P D
Sbjct:   470 EEKRIVKEEKLKQEEKYMWAVLDGVRERIGNFRVEPPGLFRGRGEHPKMGKLKKRIRPCD 529

Query:   564 ITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQS 623
             ITINIGK+ PIPECPIPGE WKEVKHDNTVTWLAFW+DPINPKEFKYVFLAASSSLKGQS
Sbjct:   530 ITINIGKEAPIPECPIPGERWKEVKHDNTVTWLAFWSDPINPKEFKYVFLAASSSLKGQS 589

Query:   624 DREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEAD 683
             D+EKYEKARKL ++I SIRAAYTKDF ++D T+RQIAVATYLIDKLALRAGNEKDDDEAD
Sbjct:   590 DKEKYEKARKLHNHIGSIRAAYTKDFNNKDVTKRQIAVATYLIDKLALRAGNEKDDDEAD 649

Query:   684 TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLF 743
             TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVE  VYKAIGQFQ GK + DDLF
Sbjct:   650 TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLF 709

Query:   744 DKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEV 803
             D+LDT+KLN HLKELM GLTAKVFRTYNASITLD ML+K T DGDV  K+ VYQ+ANKEV
Sbjct:   710 DELDTSKLNTHLKELMAGLTAKVFRTYNASITLDLMLSKETRDGDVPEKVVVYQQANKEV 769

Query:   804 AIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRN 863
             AIICNHQRTVSK+H AQ+ +L  KIE+L+  +K+L +DLDRAKKG+ PLM  SDGKRKRN
Sbjct:   770 AIICNHQRTVSKSHGAQVEKLAVKIEELREQIKELNIDLDRAKKGRTPLM-GSDGKRKRN 828

Query:   864 LAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 923
             L PEALE+K+ QT  KIEKMERDM+TKED+KTVALGTSKINY+DPRITVAWCKRH+VPIE
Sbjct:   829 LTPEALEKKIMQTQGKIEKMERDMQTKEDMKTVALGTSKINYMDPRITVAWCKRHDVPIE 888

Query:   924 KIFNKSLLAKFAWAMDVDPEFRF 946
             KIFNKSLLAKFAWAMDVDPEFRF
Sbjct:   889 KIFNKSLLAKFAWAMDVDPEFRF 911
GO:0003677 "DNA binding" evidence=IEA
GO:0003917 "DNA topoisomerase type I activity" evidence=IEA;ISS;IBA
GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005694 "chromosome" evidence=IEA
GO:0006265 "DNA topological change" evidence=IEA;IC;IBA
GO:0031490 "chromatin DNA binding" evidence=IBA
GO:0016020 "membrane" evidence=IDA
GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA
GO:0002213 "defense response to insect" evidence=RCA
GO:0006633 "fatty acid biosynthetic process" evidence=RCA
UNIPROTKB|Q84ZL5 OJ1066_B03.125 "Os08g0154600 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A8IDM1 TOP1 "DNA topoisomerase I" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
FB|FBgn0004924 Top1 "Topoisomerase 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P11387 TOP1 "DNA topoisomerase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q7YR26 TOP1 "DNA topoisomerase 1" [Chlorocebus aethiops (taxid:9534)] Back     alignment and assigned GO terms
UNIPROTKB|F1SDV7 TOP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MN93 TOP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q75CB7 AGOS_ACL008C "ACL008Cp" [Ashbya gossypii ATCC 10895 (taxid:284811)] Back     alignment and assigned GO terms
RGD|621246 Top1 "topoisomerase (DNA) I" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer5.99.1.20.991
3rd Layer5.99.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query946
smart00435391 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota 0.0
pfam02919215 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomer 1e-137
cd03489212 cd03489, Topoisomer_IB_N_LdtopoI_like, Topoisomer_ 1e-132
cd00660215 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-termi 1e-128
cd03488215 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_I 1e-109
pfam01028243 pfam01028, Topoisom_I, Eukaryotic DNA topoisomeras 1e-75
cd03490217 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A s 4e-72
cd00659218 cd00659, Topo_IB_C, DNA topoisomerase IB, C-termin 4e-72
COG3569354 COG3569, COG3569, Topoisomerase IB [DNA replicatio 1e-54
pfam1437071 pfam14370, Topo_C_assoc, C-terminal topoisomerase 1e-38
pfam06070777 pfam06070, Herpes_UL32, Herpesvirus large structur 8e-05
PHA03101314 PHA03101, PHA03101, DNA topoisomerase type I; Prov 0.001
cd00659218 cd00659, Topo_IB_C, DNA topoisomerase IB, C-termin 0.002
pfam051101154 pfam05110, AF-4, AF-4 proto-oncoprotein 0.002
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota) Back     alignment and domain information 
 Score =  603 bits (1557), Expect = 0.0
 Identities = 239/394 (60%), Positives = 278/394 (70%), Gaps = 19/394 (4%)

Query: 542 LFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWND 601
           LFRGRGEHPK GKLK+RI P DITINIGKD P+PE P PG  WKEV+HDNTVTWLA W +
Sbjct: 1   LFRGRGEHPKTGKLKRRIMPEDITINIGKDAPVPE-PPPGHKWKEVRHDNTVTWLASWKE 59

Query: 602 PINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAV 661
            IN    KYVFLAASSSLKGQSDR+KYEKARKLK +I  IR  YTKD  S++   RQ A 
Sbjct: 60  NINGS-IKYVFLAASSSLKGQSDRKKYEKARKLKKHIDKIRKDYTKDLKSKEMKVRQRAT 118

Query: 662 ATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEV 721
           A YLIDKLALRAGNEK +DEADTVGCC+L+V +V   PPNK+ FDFLGKDSI+Y N VEV
Sbjct: 119 ALYLIDKLALRAGNEKGEDEADTVGCCSLRVEHVTLKPPNKVIFDFLGKDSIRYYNEVEV 178

Query: 722 ELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLN 781
           +  V+K +  F   KK  DDLFD+L+T+KLN HLKELMPGLTAKVFRTYNASITL   L 
Sbjct: 179 DKQVFKNLKIFMKPKKPGDDLFDRLNTSKLNKHLKELMPGLTAKVFRTYNASITLQEQLK 238

Query: 782 KGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRV 840
           + T  DG+VA KI  Y RAN+EVAI+CNHQRTVSKTH   M +L EKI+ LK  LK L+ 
Sbjct: 239 ELTAKDGNVAEKILAYNRANREVAILCNHQRTVSKTHEKSMEKLQEKIKALKYQLKRLKK 298

Query: 841 DLD---RAKKGKPPLMKDSDGKRKRNLAPEALE------------RKMAQTNAKIEKMER 885
            +         K  L K    +    L  E  E            +++ +   +IEK+E 
Sbjct: 299 MILLFEMISDLKRKL-KSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEV 357

Query: 886 DMKTKEDLKTVALGTSKINYLDPRITVAWCKRHE 919
               KE+ KTVALGTSKINY+DPRITVAWCK+ +
Sbjct: 358 QATDKEENKTVALGTSKINYIDPRITVAWCKKFD 391

DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras. Length = 391
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA binding fragment Back     alignment and domain information
>gnl|CDD|239571 cd03489, Topoisomer_IB_N_LdtopoI_like, Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the heterodimeric topo I from Leishmania donvanni Back     alignment and domain information
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I and heterodimeric topo I from Leishmania donvanni Back     alignment and domain information
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like : N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I Back     alignment and domain information
>gnl|CDD|216252 pfam01028, Topoisom_I, Eukaryotic DNA topoisomerase I, catalytic core Back     alignment and domain information
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB Back     alignment and domain information
>gnl|CDD|238355 cd00659, Topo_IB_C, DNA topoisomerase IB, C-terminal catalytic domain Back     alignment and domain information
>gnl|CDD|226099 COG3569, COG3569, Topoisomerase IB [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|206538 pfam14370, Topo_C_assoc, C-terminal topoisomerase domain Back     alignment and domain information
>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32 Back     alignment and domain information
>gnl|CDD|222985 PHA03101, PHA03101, DNA topoisomerase type I; Provisional Back     alignment and domain information
>gnl|CDD|238355 cd00659, Topo_IB_C, DNA topoisomerase IB, C-terminal catalytic domain Back     alignment and domain information
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 946
KOG0981759 consensus DNA topoisomerase I [Replication, recomb 100.0
smart00435391 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topois 100.0
cd03489212 Topoisomer_IB_N_LdtopoI_like Topoisomer_IB_N_Ldtop 100.0
cd03490217 Topoisomer_IB_N_1 Topoisomer_IB_N_1: A subgroup of 100.0
cd00660215 Topoisomer_IB_N Topoisomer_IB_N: N-terminal DNA bi 100.0
cd03488215 Topoisomer_IB_N_htopoI_like Topoisomer_IB_N_htopoI 100.0
PF02919215 Topoisom_I_N: Eukaryotic DNA topoisomerase I, DNA 100.0
PHA03101314 DNA topoisomerase type I; Provisional 100.0
PF01028234 Topoisom_I: Eukaryotic DNA topoisomerase I, cataly 100.0
cd00659218 Topo_IB_C DNA topoisomerase IB, C-terminal catalyt 100.0
COG3569354 Topoisomerase IB [DNA replication, recombination, 100.0
COG3569354 Topoisomerase IB [DNA replication, recombination, 100.0
PF1437071 Topo_C_assoc: C-terminal topoisomerase domain; PDB 100.0
cd00397164 DNA_BRE_C DNA breaking-rejoining enzymes, C-termin 96.66
PF00589173 Phage_integrase: Phage integrase family; InterPro: 95.58
cd00801357 INT_P4 Bacteriophage P4 integrase. P4-like integra 95.14
TIGR02224295 recomb_XerC tyrosine recombinase XerC. The phage i 94.77
PRK02436245 xerD site-specific tyrosine recombinase XerD-like 94.76
cd01193242 INT_IntI IntI (E2) integrases, site-specific tyros 94.67
cd01192177 INT_P22_C P22-like integrases, site-specific recom 94.45
cd01188188 INT_pAE1 pAE1 and related integrases, DNA breaking 94.32
cd01182162 INT_REC_C DNA breaking-rejoining enzymes, intergra 94.31
cd01194186 INT_Tn554A_C Tn544A and related transposases, DNA 94.22
cd01189191 INT_phiLC3_C phiLC3 phage and phage-related integr 93.97
cd01187299 INT_SG4 INT_SG4, DNA breaking-rejoining enzymes, i 93.69
cd01186180 INT_SG3_C INT_SG3, DNA breaking-rejoining enzymes, 93.45
PRK05084357 xerS site-specific tyrosine recombinase XerS; Revi 93.07
PRK09692413 integrase; Provisional 92.84
cd00799287 INT_Cre Cre recombinase, C-terminal catalytic doma 92.67
cd01197180 INT_FimBE_C FimB and FimE and related proteins, DN 92.57
cd01185299 INT_Tn4399 Tn4399 and related integrases, DNA brea 92.42
cd01190260 INT_SG5 INT_SG5, DNA breaking-rejoining enzymes, i 92.2
PRK00283299 xerD site-specific tyrosine recombinase XerD; Revi 92.13
TIGR02225291 recomb_XerD tyrosine recombinase XerD. The phage i 92.01
cd00796206 INT_Rci Rci recombinase, C-terminal catalytic doma 91.98
PRK09870200 tyrosine recombinase; Provisional 91.97
PHA03397363 vlf-1 very late expression factor 1; Provisional 91.79
cd01183196 INT_SG1_C INT_SG1, DNA breaking-rejoining enzymes, 91.75
PRK00236297 xerC site-specific tyrosine recombinase XerC; Revi 90.28
cd00798284 INT_XerDC XerD and XerC integrases, DNA breaking-r 90.05
cd01199205 INT_Tn1545_C Tn1545-related conjugative transposon 90.01
PRK01287358 xerC site-specific tyrosine recombinase XerC; Revi 89.84
PRK09871198 tyrosine recombinase; Provisional 89.8
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 88.89
cd00800162 INT_Lambda_C Lambda integrase, C-terminal catalyti 88.79
cd01184181 INT_SG2_C INT_SG2, DNA breaking-rejoining enzymes, 87.52
TIGR02249315 integrase_gron integron integrase. Members of this 86.36
KOG0981759 consensus DNA topoisomerase I [Replication, recomb 86.36
cd00797158 HP1_INT_C Phage HP1 integrase, C-terminal catalyti 84.08
cd01191196 INT_phiCTX_C phiCTX phage and phage-related integr 83.16
cd01195195 INT_Tn544B_C Tn544B and related transposases, DNA 82.07
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=4.4e-227  Score=1855.49  Aligned_cols=693  Identities=56%  Similarity=0.877  Sum_probs=619.4

Q ss_pred             CCCCCCCcccccccC-CCCCCCCCCCCCCCCCCCccccccccCCCCccccccCCCCCCcCCCCCCCCCCCCCCCCCCCCC
Q 002260          236 PEDSDDEVPLSSRFP-KSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVS  314 (946)
Q Consensus       236 ~dDSDDekPLssk~~-k~~~g~S~~~~~DSde~KPLask~~~Ngs~~~~~~~~~~~~~~kr~~~~~~~~~~~~~k~~~~~  314 (946)
                      ..+||++.|+|+-+. +.-+ .|...+..+++.+|+  +..++|.....+ ...+..+.+|++.+.+.+.+++.+....+
T Consensus        44 ~~~s~~~~p~s~~~~kk~~s-~s~~~~~~~ek~k~~--~~~~~~~~~~s~-~~~~~~~~~r~~kk~~~~~~~~~~e~~~~  119 (759)
T KOG0981|consen   44 KSDSDDDKPESKTKKKKKES-GSDEDDLSIEKRKPS--NDSDKGKDVKSD-KEDDKVPGKRKLKKNSKSKQSSSKEDDDS  119 (759)
T ss_pred             ccccccccchHHHhhhcccc-cCCcccCchhhcccc--cccccccccccc-ccccccccccccccccccCcccccCCccc
Confidence            478999999999998 4444 566777778888888  777788776544 35678999999999999999999999999


Q ss_pred             CCccchhhceeeeecccc-----------cCCCCCCcccccccCCCCCCCCcccccccccccccCCchhhhhhhcccccc
Q 002260          315 DTSKEVKVKQVTVKVEKK-----------ADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKN  383 (946)
Q Consensus       315 ~~~~~~~~~~~~~~~~~k-----------~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k~~~~~  383 (946)
                      ++..+++.++.+.-.-.+           +++.|     .++++ ..+..+..+.++...+..+.+ .....+.++..+.
T Consensus       120 ~~~~~~~~k~~~~~~~~~d~~~~~~~~vk~e~sd-----k~~k~-~~~~~~~~s~k~~~sk~~~~~-~~~~~~~~~~~k~  192 (759)
T KOG0981|consen  120 ESEPSVKEKDVKPVKPKKDEKGKALKKVKEEDSD-----KDKKS-DLSNVKTKSAKPSASKLPAGA-RTEPKKKKKKAKD  192 (759)
T ss_pred             ccCCCCchhhccccccccchhhhhhhhhhhcccc-----hhhhc-cccccCccccCcccccCcccC-cCCccccccccch
Confidence            999999999987332222           22222     22222 222222222122111111111 1112333444444


Q ss_pred             cccCccccCCCCCCCCccccceeeeccccCCCCCC--CCcceEEEcCeeccCChhhHHHHHHHHHhcCCCCCChhhHHhh
Q 002260          384 SQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYL--PHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN  461 (946)
Q Consensus       384 ~~~~~~~~~~~~~~~g~~KW~tLeHnGv~FpP~Y~--P~~Vk~~YdGkpv~L~p~~EEvAtf~a~ml~t~y~~k~~F~~N  461 (946)
                      +.+.++..-++..+++++||+||+||||+|||||+  ||||+|||||+||+|||+|||||||||+||+|+|+++++||+|
T Consensus       193 e~e~~~kww~~e~~d~~~KW~tLeH~G~iFaPPYeplP~~Vk~~YdGkpv~L~~eaEEvAtfyA~mle~ey~tk~vF~~N  272 (759)
T KOG0981|consen  193 EEEDKWKWWEEEKGDDGVKWTTLEHNGPIFAPPYEPLPSGVKFYYDGKPVDLTPEAEEVATFYAAMLEHEYATKEVFRKN  272 (759)
T ss_pred             hhhhhhhhcccccCCCccceeeeeecCcccCCCCcCCCCCceEEeCCccccCCHHHHHHHHHHHHHHhcchhccHHHHHH
Confidence            43332222234556677799999999999999999  8999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhC--CCCCccccCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccccEEEEcCceeeecCcccCC
Q 002260          462 FWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEP  539 (946)
Q Consensus       462 Ff~D~r~~l~--~~~~I~~~~kcDF~~I~~~~~~~ke~kk~~skeEKk~~K~ek~~~e~~yg~~~vDG~kekVGNFrvEP  539 (946)
                      ||+|||++|+  ++++|++|++||||+||+||++|+|+||+||+|||+++|+|+++++++|||||||||+|+||||||||
T Consensus       273 Ff~Dwrk~m~~~~~~~Ik~l~kCDFt~i~~yf~~~~E~rK~mskEEK~~iKeEkek~ee~y~~cilDG~kEkigNFriEP  352 (759)
T KOG0981|consen  273 FFNDWRKVMTVEEREVIKDLSKCDFTPIFEYFKEQKEKRKQMSKEEKLKIKEEKEKLEEKYGWCILDGHKEKIGNFRIEP  352 (759)
T ss_pred             HHHHHHHHhhhhhhhhhccccccCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCeEEecCcHhhhcccccCC
Confidence            9999999999  57999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCCCCCCCCCCCCCCCCchhhhccCCCCCCCCCCCCCCcceeeeCCCCcEEEEEecCCCCcceeeeeccCCchh
Q 002260          540 PGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSL  619 (946)
Q Consensus       540 PGLfRGRG~hPk~G~lKkRV~PedvtiNi~k~a~IPp~P~pGhaWkdV~hD~~vhwlAtg~DaigRkQYkYv~L~ahs~w  619 (946)
                      ||||||||+||+||+||+||+|+|||||||++++||+ |||||.|++|+|||+|||||+|+|+|+ ++++||||+|+|++
T Consensus       353 PgLFRGRG~HPKmG~lKrRI~Pedi~iN~gkda~iP~-pppGhkWkEVrHDNTVTWLa~W~e~i~-~~~KYi~L~~~Ssl  430 (759)
T KOG0981|consen  353 PGLFRGRGEHPKMGKLKRRIMPEDITINCGKDAPIPE-PPPGHKWKEVRHDNTVTWLASWTENIN-GSFKYIMLNPSSSL  430 (759)
T ss_pred             CccccCCCCCCcccchhcccchhheEEecCCCCCCCC-CCCCCcccccccCCeeeeeeecccccC-CceeEEEecCcccc
Confidence            9999999999999999999999999999999999999 889999999999999999999999999 69999999999999


Q ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHhhccccCCcccccCCCceeeccCCCCceEEcC
Q 002260          620 KGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIP  699 (946)
Q Consensus       620 k~~rD~~Kferar~L~~~Lp~IR~~y~kDLksk~~~~RqlAvAlyLIDklALRvGnEKy~~endTvG~cTLR~eHVkl~~  699 (946)
                      +|++|++|||+||+|..+|+.||++|++||++++|..||+|||+||||+||||+|||+++++||||||||||++||+|+|
T Consensus       431 KGesD~~KyE~ARrLk~~Id~IR~~Y~~d~ksk~m~~RQravAlY~IDklALRAGnEKdedeADTVGCCsLrvehV~l~p  510 (759)
T KOG0981|consen  431 KGESDKEKYETARRLKKYIDKIRATYTKDFKSKEMKVRQRAVALYFIDKLALRAGNEKDEDEADTVGCCSLRVEHVTLHP  510 (759)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccCcccccccccccceeeeeeeeEeeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC-----eEEEEeeCCCCeEEEEEEeeChhHHHHHHhhhcCCCCCCccCccCChhHHHHHHHhhCCCCccceecccchHH
Q 002260          700 PN-----KLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASI  774 (946)
Q Consensus       700 ~~-----~V~FdFlGKdgir~~~tV~VD~~V~knLk~f~k~K~Pgd~LFd~Ldss~LN~yLkelm~glTAKdFRTynASv  774 (946)
                      ++     +|.|||||||||||+|+|+|+++||+||..|++++.|||+|||+|+|+.||+||++||+|||||||||||||+
T Consensus       511 ~~~~~e~vv~FDFLGKDSIrYyN~VeVek~VyKnl~~F~~~K~~~ddLFDrLdt~~LN~hL~~lM~GLTAKVFRTYNASi  590 (759)
T KOG0981|consen  511 PNKGKEFVVEFDFLGKDSIRYYNEVEVEKRVYKNLKIFMEGKKPGDDLFDRLDTSSLNKHLQELMDGLTAKVFRTYNASI  590 (759)
T ss_pred             ccccccceEEeeccCccceeeeeeccccHHHHHHHHHHhcCCCccchhhhhhchHHHHHHHHHHhccchhhhhhhcchhh
Confidence            65     5599999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002260          775 TLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLM  853 (946)
Q Consensus       775 ta~~~L~~~~~-~~s~~eK~~~yn~AnreVAilCNHQRaV~K~~~~~m~kl~~ki~~lk~~~~~~~~~l~~~k~~~~~~~  853 (946)
                      |||++|..++. .+++++|++.||+|||+|||||||||+|||+|++||++|+++|+++++||.+++.+|.++++++.+. 
T Consensus       591 TlqeqL~~lt~p~~~v~~KIl~YnrANr~VAIlCNHQR~v~K~h~~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~-  669 (759)
T KOG0981|consen  591 TLQEQLDKLTNPDGNVAAKILSYNRANRTVAILCNHQRAVSKTHEKSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQ-  669 (759)
T ss_pred             HHHHHHHhccCCCccHHHHHHHHhhccceeeeeecccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-
Confidence            99999999998 7899999999999999999999999999999999999999999999999999999999999998766 


Q ss_pred             CCcccccccCCCHHHHHHHHHHHHHHHHHHhhccccccccceeeeccccccccCccceeeecccccCCchhhccHhHHhh
Q 002260          854 KDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAK  933 (946)
Q Consensus       854 ~~~~~~~~~~~~~e~~~k~i~~~~~~i~k~~~~~~~keenK~vaLGTSKiNYlDPRItvAwcKr~~VPIeKif~Ktlr~K  933 (946)
                      .++++  ++  .+|+++++|++|++||++|++|++||||||||||||||||||||||||||||||+||||||||||||+|
T Consensus       670 ~~~~~--~k--~~Ek~~k~~~~l~eqi~kl~~q~~dkeenK~vALGTSKiNYiDPRitvawcKk~dVPiEKif~Kt~reK  745 (759)
T KOG0981|consen  670 EGSKE--KK--EVEKKEKKLERLEEQLKKLEIQMTDKEENKQVALGTSKLNYIDPRITVAWCKKHDVPIEKIFTKTLREK  745 (759)
T ss_pred             ccccc--cc--cHHHHHHHHHHHHHHHHHHhhhccchhhcceeecccccccccCCceeeeehhccCCcHHHHhhHHHHHH
Confidence            33333  22  689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccC-CCCCCC
Q 002260          934 FAWAMDV-DPEFRF  946 (946)
Q Consensus       934 F~WA~~~-~~d~~F  946 (946)
                      |+|||+| |++|+|
T Consensus       746 F~WA~d~~de~~~f  759 (759)
T KOG0981|consen  746 FAWAIDMADEEYRF  759 (759)
T ss_pred             HHHHhhcCCcccCC
Confidence            9999998 699998

>smart00435 TOPEUc DNA Topoisomerase I (eukaryota) Back     alignment and domain information
>cd03489 Topoisomer_IB_N_LdtopoI_like Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the heterodimeric topo I from Leishmania donvanni Back     alignment and domain information
>cd03490 Topoisomer_IB_N_1 Topoisomer_IB_N_1: A subgroup of the N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB Back     alignment and domain information
>cd00660 Topoisomer_IB_N Topoisomer_IB_N: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I and heterodimeric topo I from Leishmania donvanni Back     alignment and domain information
>cd03488 Topoisomer_IB_N_htopoI_like Topoisomer_IB_N_htopoI_like : N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I Back     alignment and domain information
>PF02919 Topoisom_I_N: Eukaryotic DNA topoisomerase I, DNA binding fragment; InterPro: IPR008336 DNA topoisomerases regulate the number of topological links between two DNA strands (i Back     alignment and domain information
>PHA03101 DNA topoisomerase type I; Provisional Back     alignment and domain information
>PF01028 Topoisom_I: Eukaryotic DNA topoisomerase I, catalytic core; InterPro: IPR013500 DNA topoisomerases regulate the number of topological links between two DNA strands (i Back     alignment and domain information
>cd00659 Topo_IB_C DNA topoisomerase IB, C-terminal catalytic domain Back     alignment and domain information
>COG3569 Topoisomerase IB [DNA replication, recombination, and repair] Back     alignment and domain information
>COG3569 Topoisomerase IB [DNA replication, recombination, and repair] Back     alignment and domain information
>PF14370 Topo_C_assoc: C-terminal topoisomerase domain; PDB: 1TL8_A 1K4T_A 1A36_A 1RR8_C 1T8I_A 1SC7_A 1EJ9_A 1LPQ_A 1RRJ_A 1A31_A Back     alignment and domain information
>cd00397 DNA_BRE_C DNA breaking-rejoining enzymes, C-terminal catalytic domain Back     alignment and domain information
>PF00589 Phage_integrase: Phage integrase family; InterPro: IPR002104 Phage integrase proteins cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ] Back     alignment and domain information
>cd00801 INT_P4 Bacteriophage P4 integrase Back     alignment and domain information
>TIGR02224 recomb_XerC tyrosine recombinase XerC Back     alignment and domain information
>PRK02436 xerD site-specific tyrosine recombinase XerD-like protein; Reviewed Back     alignment and domain information
>cd01193 INT_IntI IntI (E2) integrases, site-specific tyrosine recombinases, DNA breaking-rejoining enzymes, N- and C-terminal domains Back     alignment and domain information
>cd01192 INT_P22_C P22-like integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain Back     alignment and domain information
>cd01188 INT_pAE1 pAE1 and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal domain Back     alignment and domain information
>cd01182 INT_REC_C DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain Back     alignment and domain information
>cd01194 INT_Tn554A_C Tn544A and related transposases, DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal catalytic domain Back     alignment and domain information
>cd01189 INT_phiLC3_C phiLC3 phage and phage-related integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain Back     alignment and domain information
>cd01187 INT_SG4 INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains Back     alignment and domain information
>cd01186 INT_SG3_C INT_SG3, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 3, catalytic domain Back     alignment and domain information
>PRK05084 xerS site-specific tyrosine recombinase XerS; Reviewed Back     alignment and domain information
>PRK09692 integrase; Provisional Back     alignment and domain information
>cd00799 INT_Cre Cre recombinase, C-terminal catalytic domain Back     alignment and domain information
>cd01197 INT_FimBE_C FimB and FimE and related proteins, DNA breaking-rejoining enzymes, integrase/recombinases, catalytic domain Back     alignment and domain information
>cd01185 INT_Tn4399 Tn4399 and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains Back     alignment and domain information
>cd01190 INT_SG5 INT_SG5, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 5, N- and C-terminal domains Back     alignment and domain information
>PRK00283 xerD site-specific tyrosine recombinase XerD; Reviewed Back     alignment and domain information
>TIGR02225 recomb_XerD tyrosine recombinase XerD Back     alignment and domain information
>cd00796 INT_Rci Rci recombinase, C-terminal catalytic domain Back     alignment and domain information
>PRK09870 tyrosine recombinase; Provisional Back     alignment and domain information
>PHA03397 vlf-1 very late expression factor 1; Provisional Back     alignment and domain information
>cd01183 INT_SG1_C INT_SG1, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 1, C-terminal catalytic domain Back     alignment and domain information
>PRK00236 xerC site-specific tyrosine recombinase XerC; Reviewed Back     alignment and domain information
>cd00798 INT_XerDC XerD and XerC integrases, DNA breaking-rejoining enzymes, N- and C-terminal domains Back     alignment and domain information
>cd01199 INT_Tn1545_C Tn1545-related conjugative transposon integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain Back     alignment and domain information
>PRK01287 xerC site-specific tyrosine recombinase XerC; Reviewed Back     alignment and domain information
>PRK09871 tyrosine recombinase; Provisional Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>cd00800 INT_Lambda_C Lambda integrase, C-terminal catalytic domain Back     alignment and domain information
>cd01184 INT_SG2_C INT_SG2, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 2, C-terminal catalytic domain Back     alignment and domain information
>TIGR02249 integrase_gron integron integrase Back     alignment and domain information
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair] Back     alignment and domain information
>cd00797 HP1_INT_C Phage HP1 integrase, C-terminal catalytic domain Back     alignment and domain information
>cd01191 INT_phiCTX_C phiCTX phage and phage-related integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain Back     alignment and domain information
>cd01195 INT_Tn544B_C Tn544B and related transposases, DNA breaking-rejoining enzymes, integrase/recombinases, catalytic domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query946
1a35_A591 Human Topoisomerase IDNA COMPLEX Length = 591 1e-135
1lpq_A564 Human Dna Topoisomerase I (70 Kda) In Non-Covalent 1e-135
1r49_A592 Human Topoisomerase I (Topo70) Double Mutant K532rY 1e-135
1k4s_A592 Human Dna Topoisomerase I In Covalent Complex With 1e-135
1a31_A591 Human Reconstituted Dna Topoisomerase I In Covalent 1e-135
1nh3_A563 Human Topoisomerase I Ara-C Complex Length = 563 1e-134
1seu_A592 Human Dna Topoisomerase I (70 Kda) In Complex With 1e-134
1rrj_A565 Structural Mechanisms Of Camptothecin Resistance By 1e-134
1ej9_A563 Crystal Structure Of Human Topoisomerase I Dna Comp 1e-134
1rr8_C565 Structural Mechanisms Of Camptothecin Resistance By 1e-133
2b9s_A432 Crystal Structure Of Heterodimeric L. Donovani Topo 1e-123
1ois_A223 Yeast Dna Topoisomerase I, N-Terminal Fragment Leng 3e-49
2b9s_B62 Crystal Structure Of Heterodimeric L. Donovani Topo 2e-11
2h7f_X314 Structure Of Variola Topoisomerase Covalently Bound 4e-06
2h7g_X314 Structure Of Variola Topoisomerase Non-Covalently B 4e-06
1a41_A234 Type 1-Topoisomerase Catalytic Fragment From Vaccin 3e-05
>pdb|1A35|A Chain A, Human Topoisomerase IDNA COMPLEX Length = 591 Back     alignment and structure 
Iteration: 1

 Score =  479 bits (1234), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/557 (47%), Positives = 342/557 (61%), Gaps = 19/557 (3%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
           KW  L H G +F PPY  LP  VK  Y GK + L+P+ EEVAT FA MLD +Y  K  FR
Sbjct: 42  KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 101
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXX 517
           +NF+ DWRK +   + ++I NL  CDF  +  +                           
Sbjct: 102 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 161
Query: 518 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
             Y + I+D  KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN  KD  +P  
Sbjct: 162 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 221
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
           P PG  WKEV+HDN VTWL  W + I     KY+ L  SS +KG+ D +KYE AR+LK  
Sbjct: 222 P-PGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 279
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
           +  IR  Y +D+ S++   RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++ 
Sbjct: 280 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 339
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
             P        ++FDFLGKDSI+Y N V VE  V+K +  F   K+  DDLFD+L+T  L
Sbjct: 340 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 399
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
           N HL++LM GLTAKVFRTYNASITL   L + T  D ++  KI  Y RAN+ VAI+CNHQ
Sbjct: 400 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 459
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALE 870
           R   KT    M  L  KI+  K  L D R DL  A K    +MKD+  K+      E+ +
Sbjct: 460 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK----VVESKK 514
Query: 871 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 930
           + + +   ++ K+E     +E+ K +ALGTSK+N+LDPRITVAWCK+  VPIEKI+NK+ 
Sbjct: 515 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNFLDPRITVAWCKKWGVPIEKIYNKTQ 574
Query: 931 LAKFAWAMDV-DPEFRF 946
             KFAWA+D+ D ++ F
Sbjct: 575 REKFAWAIDMADEDYEF 591
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex With A 22 Base Pair Dna Duplex Containing An 8-Oxog Lesion Length = 564 Back     alignment and structure
>pdb|1R49|A Chain A, Human Topoisomerase I (Topo70) Double Mutant K532rY723F Length = 592 Back     alignment and structure
>pdb|1K4S|A Chain A, Human Dna Topoisomerase I In Covalent Complex With A 22 Base Pair Dna Duplex Length = 592 Back     alignment and structure
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent Complex With A 22 Base Pair Dna Duplex Length = 591 Back     alignment and structure
>pdb|1NH3|A Chain A, Human Topoisomerase I Ara-C Complex Length = 563 Back     alignment and structure
>pdb|1SEU|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The Indolocarbazole Sa315f And Covalent Complex With A 22 Base Pair Dna Duplex Length = 592 Back     alignment and structure
>pdb|1RRJ|A Chain A, Structural Mechanisms Of Camptothecin Resistance By Mutations In Human Topoisomerase I Length = 565 Back     alignment and structure
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex Length = 563 Back     alignment and structure
>pdb|1RR8|C Chain C, Structural Mechanisms Of Camptothecin Resistance By Mutations In Human Topoisomerase I Length = 565 Back     alignment and structure
>pdb|2B9S|A Chain A, Crystal Structure Of Heterodimeric L. Donovani Topoisomerase I-Vanadate-Dna Complex Length = 432 Back     alignment and structure
>pdb|1OIS|A Chain A, Yeast Dna Topoisomerase I, N-Terminal Fragment Length = 223 Back     alignment and structure
>pdb|2B9S|B Chain B, Crystal Structure Of Heterodimeric L. Donovani Topoisomerase I-Vanadate-Dna Complex Length = 62 Back     alignment and structure
>pdb|2H7F|X Chain X, Structure Of Variola Topoisomerase Covalently Bound To Dna Length = 314 Back     alignment and structure
>pdb|2H7G|X Chain X, Structure Of Variola Topoisomerase Non-Covalently Bound To Dna Length = 314 Back     alignment and structure
>pdb|1A41|A Chain A, Type 1-Topoisomerase Catalytic Fragment From Vaccinia Virus Length = 234 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query946
1a31_A591 Protein (topoisomerase I); topoisomerase I/DNA, DN 0.0
2b9s_A432 Topoisomerase I-like protein; vanadate complex, is 0.0
1ois_A223 DNA topoisomerase I; DNA-binding protein; HET: DNA 1e-113
2h7g_X314 DNA topoisomerase 1; type IB topoisomerase, DNA bi 7e-62
3m4a_A346 Putative type I topoisomerase; type IB, topib, pro 2e-53
2b9s_B62 DNA topoisomerase I-like protein; vanadate complex 1e-24
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A* Length = 591 Back     alignment and structure
 Score =  609 bits (1572), Expect = 0.0
 Identities = 279/598 (46%), Positives = 358/598 (59%), Gaps = 19/598 (3%)

Query: 361 KATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--L 418
           K                KK  K  +  K             KW  L H G +F PPY  L
Sbjct: 1   KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPL 60

Query: 419 PHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGK--NHVI 476
           P  VK  Y GK + L+P+ EEVAT FA MLD +Y  K  FR+NF+ DWRK +     ++I
Sbjct: 61  PENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNII 120

Query: 477 QNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFR 536
            NL  CDF  +  + + Q E +KQMS EEK  +KEE  K  ++Y + I+D  KE++ NF+
Sbjct: 121 TNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFK 180

Query: 537 VEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWL 596
           +EPPGLFRGRG HPKMG LK+RI P DI IN  KD  +P  P PG  WKEV+HDN VTWL
Sbjct: 181 IEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPP-PGHKWKEVRHDNKVTWL 239

Query: 597 AFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTR 656
             W + I     KY+ L  SS +KG+ D +KYE AR+LK  +  IR  Y +D+ S++   
Sbjct: 240 VSWTENI-QGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKV 298

Query: 657 RQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVECIPP-----NKLKFDFLGK 710
           RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++   P        ++FDFLGK
Sbjct: 299 RQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGK 358

Query: 711 DSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTY 770
           DSI+Y N V VE  V+K +  F   K+  DDLFD+L+T  LN HL++LM GLTAKVFRTY
Sbjct: 359 DSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTY 418

Query: 771 NASITLDGMLNK-GTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIE 829
           NASITL   L +    D ++  KI  Y RAN+ VAI+CNHQR   KT    M  L  KI+
Sbjct: 419 NASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKID 478

Query: 830 DLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKT 889
             K  L D R DL  AK     +        K     E+ ++ + +   ++ K+E     
Sbjct: 479 AKKEQLADARRDLKSAKADAKVM-----KDAKTKKVVESKKKAVQRLEEQLMKLEVQATD 533

Query: 890 KEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMD-VDPEFRF 946
           +E+ K +ALGTSK+NYLDPRITVAWCK+  VPIEKI+NK+   KFAWA+D  D ++ F
Sbjct: 534 REENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMADEDYEF 591
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani} Length = 432 Back     alignment and structure
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A {Saccharomyces cerevisiae} SCOP: e.15.1.1 Length = 223 Back     alignment and structure
>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding, protein-DNA complex, isomerase/DNA complex; HET: DNA; 1.90A {Variola virus} PDB: 2h7f_X* 3igc_A* 1a41_A Length = 314 Back     alignment and structure
>3m4a_A Putative type I topoisomerase; type IB, topib, protein-DNA complex, isomerase-DNA complex; HET: DNA; 1.65A {Deinococcus radiodurans} PDB: 2f4q_A* Length = 346 Back     alignment and structure
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani} Length = 62 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query946
1a31_A591 Protein (topoisomerase I); topoisomerase I/DNA, DN 100.0
2b9s_A432 Topoisomerase I-like protein; vanadate complex, is 100.0
1ois_A223 DNA topoisomerase I; DNA-binding protein; HET: DNA 100.0
3m4a_A346 Putative type I topoisomerase; type IB, topib, pro 100.0
2h7g_X314 DNA topoisomerase 1; type IB topoisomerase, DNA bi 100.0
2b9s_B62 DNA topoisomerase I-like protein; vanadate complex 100.0
1vcc_A77 DNA topoisomerase I; DNA binding; HET: DNA; 1.60A 97.37
4a8e_A292 XER A, probable tyrosine recombinase XERC-like; ce 95.31
1ae9_A179 Lambda integrase; DNA recombination, site-specific 95.3
1xo0_A324 Recombinase CRE; CRE recombinase, holliday junctio 94.94
1z1b_A356 Integrase; protein-DNA complex, DNA binding protei 94.77
1z19_A283 Integrase; protein-DNA complex, DNA binding protei 94.38
3nkh_A244 Integrase; alpha-fold, MRSA protein, structural ge 94.37
1a0p_A290 Site-specific recombinase XERD; DNA binding, DNA r 94.23
1aih_A170 HP1 integrase; DNA integration, recombination; 2.5 92.06
2a3v_A320 Site-specific recombinase INTI4; protein-DNA compl 89.59
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A* Back     alignment and structure
Probab=100.00  E-value=2e-203  Score=1699.60  Aligned_cols=552  Identities=50%  Similarity=0.850  Sum_probs=435.0

Q ss_pred             ccccCccccCCCCCCCCccccceeeeccccCCCCCC--CCcceEEEcCeeccCChhhHHHHHHHHHhcCCCCCChhhHHh
Q 002260          383 NSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYL--PHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRE  460 (946)
Q Consensus       383 ~~~~~~~~~~~~~~~~g~~KW~tLeHnGv~FpP~Y~--P~~Vk~~YdGkpv~L~p~~EEvAtf~a~ml~t~y~~k~~F~~  460 (946)
                      ..+||..    +..++|+ ||+|||||||+|||||+  ||||+|+|||+||+|||+|||||||||+||+|+|+++++||+
T Consensus        28 ~~~wwe~----~~~~~~~-kW~tLeHnG~~Fpp~YeplP~~V~~~Ydg~pv~L~~~~EEvAtf~a~ml~t~~~~~~~F~~  102 (591)
T 1a31_A           28 KWKWWEE----ERYPEGI-KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRK  102 (591)
T ss_dssp             -----------------C-CCSCEEECCCBCCCCCCCCCTTCCCEETTEECCCCHHHHHHHHHHHTTTTSGGGGCHHHHH
T ss_pred             hhhcccc----cCCCCCc-ceeEeeecceecCCcccCCCCCCceeECCEeccCCHHHHHHHHHHHHhcCCcccccHHHHH
Confidence            3456654    4445565 99999999999999999  899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhC--CCCCccccCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccccEEEEcCceeeecCcccC
Q 002260          461 NFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVE  538 (946)
Q Consensus       461 NFf~D~r~~l~--~~~~I~~~~kcDF~~I~~~~~~~ke~kk~~skeEKk~~K~ek~~~e~~yg~~~vDG~kekVGNFrvE  538 (946)
                      |||+||+++|.  +++.|++|++|||++||+||++++|+||+||+|||+++|+++++++++||||+||||+|+|||||||
T Consensus       103 NFf~df~~~l~~~~~~~i~~~~kcDF~~i~~~~~~~~e~kk~~s~eEK~~~k~~~~~~~~~y~~~~~DG~~ekvgnfriE  182 (591)
T 1a31_A          103 NFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIE  182 (591)
T ss_dssp             HHHHHHHHHSCHHHHHHCCCGGGEECHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHSEEEETTEEEEBSCCBCC
T ss_pred             HHHHHHHHHhhhcCCcccCchhhCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCEEEECCeEEecCCcccC
Confidence            99999999995  4789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCCCCCCCCCCCCCCCCchhhhccCCCCCCCCCCCCCCcceeeeCCCCcEEEEEecCCCCcceeeeeccCCch
Q 002260          539 PPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSS  618 (946)
Q Consensus       539 PPGLfRGRG~hPk~G~lKkRV~PedvtiNi~k~a~IPp~P~pGhaWkdV~hD~~vhwlAtg~DaigRkQYkYv~L~ahs~  618 (946)
                      |||||||||+||+||+||+||+|+||||||+++++||+ |||||||++|+||++|+|||+|.|.++ +++.|+|++|+|.
T Consensus       183 PPgLFrGRG~HPk~G~lK~RV~pedvtiNi~k~a~iP~-pp~GhaWkdV~hd~tvtWia~w~~hIq-GRkQY~Yh~~~s~  260 (591)
T 1a31_A          183 PPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPS-PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLNPSSR  260 (591)
T ss_dssp             CSEECCCSSSCTTTTCEECCCCGGGCEEECCTTSCCCC-CSTTCCCSEEECCTTSCCSEEEECTTT-CCEEEECBCTTSH
T ss_pred             CCccccCCCCCCCCCccccccChhhhhhhhccCCCCCc-CCCCCCcceeccCCceEEEEeChHHhc-CCeeEEEecCchH
Confidence            99999999999999999999999999999999999999 779999999999999999999999996 4456666888899


Q ss_pred             hhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHhhccccCCcccccC-CCceeeccCCCCceEE
Q 002260          619 LKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVEC  697 (946)
Q Consensus       619 wk~~rD~~Kferar~L~~~Lp~IR~~y~kDLksk~~~~RqlAvAlyLIDklALRvGnEKy~~e-ndTvG~cTLR~eHVkl  697 (946)
                      |+++||+.||++|++|+.+||+||++|++||++++|.+||+||||||||.+|||||||+|+++ |+||||||||++||+|
T Consensus       261 wk~~rD~~Kfe~ar~l~~~Lp~IR~~~~~dL~s~~~r~rqlAval~LID~~alRvGnekya~e~ndTvGl~TLR~eHV~l  340 (591)
T 1a31_A          261 IKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINL  340 (591)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCCCCCCCCCTTTSCCCCCGGGCBGGGCCE
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHhhhhcCCcccccccCCCeeeecccccceEE
Confidence            999999999999999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             cC-----CCeEEEEeeCCCCeEEEEEEeeChhHHHHHHhhhcCCCCCCccCccCChhHHHHHHHhhCCCCccceecccch
Q 002260          698 IP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNA  772 (946)
Q Consensus       698 ~~-----~~~V~FdFlGKdgir~~~tV~VD~~V~knLk~f~k~K~Pgd~LFd~Ldss~LN~yLkelm~glTAKdFRTynA  772 (946)
                      ++     +++|+|+|+|||||+|+++|.||++||++|+.|++++.||++||+.|++++||+||+++|+||||||||||||
T Consensus       341 ~~~~~g~~~~V~FdF~GKdgir~~~~V~vD~~v~k~L~~f~~~K~Pg~~LF~~l~s~~lN~yLkelmgglTAKdFRTwnA  420 (591)
T 1a31_A          341 HPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNA  420 (591)
T ss_dssp             EEEETTEEEEEEEEEECGGGCEEEEEEECCHHHHHHHHHTTTTCCTTSBTTTTCCHHHHHHHHHHHSTTCCHHHHHHHHH
T ss_pred             eccccCCCCeEEEEEecCCceEEEEEEccCHHHHHHHHHHHhCCCCchHhhccCCHHHHHHHHHHHcCCCceeeeccCch
Confidence            95     3899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 002260          773 SITLDGMLNKGTGDG-DVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPP  851 (946)
Q Consensus       773 Svta~~~L~~~~~~~-s~~eK~~~yn~AnreVAilCNHQRaV~K~~~~~m~kl~~ki~~lk~~~~~~~~~l~~~k~~~~~  851 (946)
                      |+||+++|.+++..+ ++++++++||+|||+|||||||||+|||+|++||++|+++|+++++|+.+++.+|..++++++.
T Consensus       421 Svta~~~L~~~~~~~~s~~ek~~~yn~Anr~VAiLCNHqR~vpK~~~~~m~kl~~ki~~~~~~~~~~~~~l~~~~~~~~~  500 (591)
T 1a31_A          421 SITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKV  500 (591)
T ss_dssp             HHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            999999999998777 9999999999999999999999999999999999999999999999999999999998887754


Q ss_pred             CCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhccccccccceeeeccccccccCccceeeecccccCCchhhccHhHH
Q 002260          852 LMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL  931 (946)
Q Consensus       852 ~~~~~~~~~~~~~~~e~~~k~i~~~~~~i~k~~~~~~~keenK~vaLGTSKiNYlDPRItvAwcKr~~VPIeKif~Ktlr  931 (946)
                      . .+    .+...++|+++++|+++++||++|++|++|||+||||||||||||||||||||||||||+||||||||||||
T Consensus       501 ~-~~----~~~~~~~e~~~k~~~~~~~~i~k~~~q~~~ke~nk~vaLgTSKiNYlDPRItvawckk~~VPieKif~ktlr  575 (591)
T 1a31_A          501 M-KD----AKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQR  575 (591)
T ss_dssp             --------------------------------------------------CTTTSCHHHHHHHHHHTTCCGGGTSCHHHH
T ss_pred             c-cc----ccccccHHHHHHHHHHHHHHHHHHHhhhhhhhcCeeeecccchhhccCchhheeehhhcCCCHHHhccHHHH
Confidence            3 22    123347899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccccC-CCCCCC
Q 002260          932 AKFAWAMDV-DPEFRF  946 (946)
Q Consensus       932 ~KF~WA~~~-~~d~~F  946 (946)
                      +||+|||+| ++||+|
T Consensus       576 ~KF~WA~~~~~~~~~F  591 (591)
T 1a31_A          576 EKFAWAIDMADEDYEF  591 (591)
T ss_dssp             HHTHHHHHHCCTTCCC
T ss_pred             HhhhhHHhCCCCCCcC
Confidence            999999997 999999
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani} Back     alignment and structure
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A {Saccharomyces cerevisiae} SCOP: e.15.1.1 Back     alignment and structure
>3m4a_A Putative type I topoisomerase; type IB, topib, protein-DNA complex, isomerase-DNA complex; HET: DNA; 1.65A {Deinococcus radiodurans} PDB: 2f4q_A* Back     alignment and structure
>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding, protein-DNA complex, isomerase/DNA complex; HET: DNA; 1.90A {Variola virus} PDB: 2h7f_X* 3igc_A* 1a41_A Back     alignment and structure
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani} Back     alignment and structure
>1vcc_A DNA topoisomerase I; DNA binding; HET: DNA; 1.60A {Vaccinia virus} SCOP: d.121.1.1 Back     alignment and structure
>4a8e_A XER A, probable tyrosine recombinase XERC-like; cell cycle, chromosome dimer resolution, PAB0255; 2.99A {Pyrococcus abyssi} Back     alignment and structure
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1 Back     alignment and structure
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ... Back     alignment and structure
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3* Back     alignment and structure
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A* Back     alignment and structure
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1 Back     alignment and structure
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1 Back     alignment and structure
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 946
d1oisa_223 e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-te 1e-122
d1k4ta3230 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase 1e-120
d1k4ta2263 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA top 4e-70
d1k4ta2263 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA top 3e-19
d1a41a_230 d.163.1.2 (A:) Eukaryotic DNA topoisomerase I, cat 4e-45
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 223 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
superfamily: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
family: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
domain: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  367 bits (943), Expect = e-122
 Identities = 113/222 (50%), Positives = 154/222 (69%), Gaps = 10/222 (4%)

Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
           KW TL HNGVIFPPPY  LP  +K+ Y GK V+L P+ EEVA  FA +L++D+ + P F+
Sbjct: 4   KWVTLKHNGVIFPPPYQPLPSHIKLYYDGKPVDLPPQAEEVAGFFAALLESDHAKNPVFQ 63

Query: 460 ENFWNDWRKLLGKNH------VIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 513
           +NF+ND+ ++L ++        I+    CDF  ++D+ Q QKE+KKQ++S+EKK ++ E+
Sbjct: 64  KNFFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLER 123

Query: 514 NKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
            K EE Y +  +DG +E+VGNF+VEPP LFRGRG HPK GKLK+R+ P DI +N+ KD P
Sbjct: 124 EKFEEDYKFCELDGRREQVGNFKVEPPDLFRGRGAHPKTGKLKRRVNPEDIVLNLSKDAP 183

Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAA 615
           +P  P  G  W E++HDNTV WLA W + I    FKYV LAA
Sbjct: 184 VPPAP-EGHKWGEIRHDNTVQWLAMWRENIF-NSFKYVRLAA 223
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 230 Back     information, alignment and structure
>d1k4ta2 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA topoisomerase I, catalytic core {Human (Homo sapiens) [TaxId: 9606]} Length = 263 Back     information, alignment and structure
>d1k4ta2 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA topoisomerase I, catalytic core {Human (Homo sapiens) [TaxId: 9606]} Length = 263 Back     information, alignment and structure
>d1a41a_ d.163.1.2 (A:) Eukaryotic DNA topoisomerase I, catalytic core {Vaccinia virus [TaxId: 10245]} Length = 230 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query946
d1k4ta3230 Eukaryotic DNA topoisomerase I, N-terminal DNA-bin 100.0
d1oisa_223 Eukaryotic DNA topoisomerase I, N-terminal DNA-bin 100.0
d1k4ta2263 Eukaryotic DNA topoisomerase I, catalytic core {Hu 100.0
d1a41a_230 Eukaryotic DNA topoisomerase I, catalytic core {Va 100.0
d1k4ta172 Eukaryotic DNA topoisomerase I, dispensable insert 98.79
d1vcca_77 Vaccinia DNA topoisomerase I, 9 kDa N-terminal fra 97.66
d1aiha_170 Integrase {Bacteriophage HP1 [TaxId: 10690]} 80.79
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
superfamily: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
family: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
domain: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-97  Score=754.66  Aligned_cols=224  Identities=49%  Similarity=0.923  Sum_probs=214.0

Q ss_pred             cccCccccCCCCCCCCccccceeeeccccCCCCCC--CCcceEEEcCeeccCChhhHHHHHHHHHhcCCCCCChhhHHhh
Q 002260          384 SQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYL--PHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN  461 (946)
Q Consensus       384 ~~~~~~~~~~~~~~~g~~KW~tLeHnGv~FpP~Y~--P~~Vk~~YdGkpv~L~p~~EEvAtf~a~ml~t~y~~k~~F~~N  461 (946)
                      .+||..    +..++|. ||+|||||||+|||+|+  ||||+|+|||+||+|+|+|||||||||+||+|+|+++++||+|
T Consensus         3 ~kWWe~----~~~~~~~-KW~tLeHnGv~FpP~Ye~lP~~Vk~~YdG~pv~L~p~~EEvAtf~a~~l~t~y~~~~~F~kN   77 (230)
T d1k4ta3           3 WKWWEE----ERYPEGI-KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKN   77 (230)
T ss_dssp             CCGGGS----CCCCSSC-CCSCEEECCCBCCCCCCCCCTTCCCEETTEECCCCHHHHHHHHHHHHTTTSGGGGCHHHHHH
T ss_pred             cccccC----CCCCCCc-ceeeeeeCCcccCCCccCCCCCccEEECCEEccCCHHHHHHHHHHHHHhCCccccChHHHHH
Confidence            455654    4445665 99999999999999999  7999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhCC--CCCccccCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccccEEEEcCceeeecCcccCC
Q 002260          462 FWNDWRKLLGK--NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEP  539 (946)
Q Consensus       462 Ff~D~r~~l~~--~~~I~~~~kcDF~~I~~~~~~~ke~kk~~skeEKk~~K~ek~~~e~~yg~~~vDG~kekVGNFrvEP  539 (946)
                      ||+||+++|+.  ++.|++|++|||++||+||++++|+||+||+|||+++|+++++++++||||+|||++|+||||||||
T Consensus        78 Ff~Df~~~l~~~~~~~i~~f~kcDF~~i~~~~~~~ke~kK~~skeEKk~~Keek~~~~~~Y~~~~vDG~kekVGNfriEP  157 (230)
T d1k4ta3          78 FFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEP  157 (230)
T ss_dssp             HHHHHHHHSCHHHHHHCCCSTTEECHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSEEEETTEEEEBSCCBCCC
T ss_pred             HHHHHHHHhCcccccccCchhhCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccccEEEECCcEEEeccccccC
Confidence            99999999964  5789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCCCCCCCCCCCCCCCCchhhhccCCCCCCCCCCCCCCcceeeeCCCCcEEEEEecCCCCcceeeeecc
Q 002260          540 PGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLA  614 (946)
Q Consensus       540 PGLfRGRG~hPk~G~lKkRV~PedvtiNi~k~a~IPp~P~pGhaWkdV~hD~~vhwlAtg~DaigRkQYkYv~L~  614 (946)
                      ||||||||+||+||+||+||+|+||||||+++++||+ |++||+|++|+||++|+|||+|+|+++ +|++||||+
T Consensus       158 PGLFrGRG~HPK~G~lK~RI~PeDVtiNi~kda~vP~-pp~Gh~WkeV~HDntVtWLA~W~dnI~-~~~KYV~L~  230 (230)
T d1k4ta3         158 PGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPS-PPPGHKWKEVRHDNKVTWLVSWTENIQ-GSIKYIMLN  230 (230)
T ss_dssp             CEECCCSSSCTTTTCEECCCCGGGCEEECCTTSCCCC-CSTTCCCSEEECCTTSCCSEEEECTTT-CCEEEECBC
T ss_pred             CcccccCCCCCCCCccccccChhheEEEcCCCCCCCc-cCCCCCcceeEeCCCceEEEEeeeccC-CceEEEEeC
Confidence            9999999999999999999999999999999999997 779999999999999999999999999 899999995
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k4ta2 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA topoisomerase I, catalytic core {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a41a_ d.163.1.2 (A:) Eukaryotic DNA topoisomerase I, catalytic core {Vaccinia virus [TaxId: 10245]} Back     information, alignment and structure
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vcca_ d.121.1.1 (A:) Vaccinia DNA topoisomerase I, 9 kDa N-terminal fragment {Vaccinia virus, strain WR [TaxId: 10245]} Back     information, alignment and structure
>d1aiha_ d.163.1.1 (A:) Integrase {Bacteriophage HP1 [TaxId: 10690]} Back     information, alignment and structure